Query 005989
Match_columns 666
No_of_seqs 105 out of 119
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 16:45:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005989.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005989hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09726 Macoilin: Transmembra 97.2 0.016 3.5E-07 67.8 18.1 174 218-417 451-626 (697)
2 KOG0977 Nuclear envelope prote 96.6 0.19 4.2E-06 57.5 20.2 187 229-417 115-335 (546)
3 PF07888 CALCOCO1: Calcium bin 96.5 0.57 1.2E-05 53.9 22.9 118 300-419 302-441 (546)
4 PF09726 Macoilin: Transmembra 96.5 0.082 1.8E-06 62.1 16.6 70 228-302 426-509 (697)
5 KOG0161 Myosin class II heavy 96.2 0.57 1.2E-05 60.4 22.7 124 235-358 972-1118(1930)
6 KOG0971 Microtubule-associated 96.2 0.79 1.7E-05 55.3 22.0 138 222-359 271-439 (1243)
7 PF00038 Filament: Intermediat 95.9 0.35 7.5E-06 50.2 16.4 116 213-328 32-150 (312)
8 KOG0612 Rho-associated, coiled 94.9 7.7 0.00017 48.5 24.8 111 232-347 466-581 (1317)
9 PF07888 CALCOCO1: Calcium bin 94.7 2.6 5.6E-05 48.7 19.4 165 218-419 295-462 (546)
10 TIGR00606 rad50 rad50. This fa 94.6 4.5 9.8E-05 50.7 22.9 103 308-419 866-968 (1311)
11 TIGR02169 SMC_prok_A chromosom 94.5 6.5 0.00014 47.2 23.0 24 190-213 167-190 (1164)
12 PF00038 Filament: Intermediat 94.5 4.6 9.9E-05 42.1 19.2 69 226-299 74-142 (312)
13 KOG0977 Nuclear envelope prote 94.4 4.7 0.0001 46.7 20.5 173 233-418 91-276 (546)
14 TIGR02169 SMC_prok_A chromosom 94.3 6.7 0.00015 47.1 22.7 27 232-258 292-318 (1164)
15 KOG0996 Structural maintenance 94.2 4.6 0.0001 50.2 20.9 120 240-359 333-455 (1293)
16 KOG0933 Structural maintenance 92.9 9.7 0.00021 47.0 20.3 138 227-373 741-878 (1174)
17 PHA02562 46 endonuclease subun 92.9 5.9 0.00013 44.3 17.9 141 204-356 148-304 (562)
18 COG1196 Smc Chromosome segrega 92.9 15 0.00032 45.8 22.7 59 207-265 668-726 (1163)
19 PRK02224 chromosome segregatio 92.8 12 0.00026 44.5 21.0 27 331-357 614-640 (880)
20 PRK03918 chromosome segregatio 92.1 27 0.0006 41.4 22.8 20 202-221 141-160 (880)
21 PF11559 ADIP: Afadin- and alp 92.1 5.2 0.00011 38.0 13.9 59 203-261 28-86 (151)
22 PF06705 SF-assemblin: SF-asse 91.6 18 0.00039 37.2 18.4 70 273-344 91-161 (247)
23 PF05615 THOC7: Tho complex su 91.3 6.6 0.00014 36.9 13.6 90 205-299 18-113 (139)
24 COG1196 Smc Chromosome segrega 91.1 34 0.00074 42.7 23.0 14 186-199 165-178 (1163)
25 PRK02224 chromosome segregatio 91.0 38 0.00082 40.5 22.5 40 303-342 357-396 (880)
26 KOG0161 Myosin class II heavy 91.0 28 0.0006 46.0 22.4 111 228-345 1246-1358(1930)
27 PF05701 WEMBL: Weak chloropla 90.9 17 0.00036 41.7 18.8 21 275-295 303-323 (522)
28 PF12128 DUF3584: Protein of u 90.4 46 0.001 41.9 23.3 64 218-281 626-689 (1201)
29 PRK09039 hypothetical protein; 90.2 12 0.00025 40.9 16.0 62 229-309 48-109 (343)
30 PF05701 WEMBL: Weak chloropla 90.1 41 0.00089 38.6 21.6 92 322-418 157-265 (522)
31 PF10174 Cast: RIM-binding pro 89.8 25 0.00053 42.6 19.6 73 341-417 242-316 (775)
32 PF12128 DUF3584: Protein of u 88.9 39 0.00085 42.5 21.1 64 230-293 631-697 (1201)
33 KOG0964 Structural maintenance 88.6 35 0.00076 42.4 19.4 181 211-412 235-442 (1200)
34 KOG0163 Myosin class VI heavy 88.1 18 0.0004 43.7 16.4 94 201-297 845-940 (1259)
35 PF12718 Tropomyosin_1: Tropom 87.5 29 0.00062 33.6 16.6 93 229-326 2-104 (143)
36 KOG0933 Structural maintenance 87.2 91 0.002 39.1 22.7 230 178-420 638-903 (1174)
37 KOG0963 Transcription factor/C 87.1 8.5 0.00018 45.2 13.0 123 222-376 230-357 (629)
38 KOG0579 Ste20-like serine/thre 87.0 34 0.00074 41.3 17.6 84 324-418 1089-1172(1187)
39 KOG0250 DNA repair protein RAD 86.6 27 0.00058 43.6 17.2 152 228-391 310-462 (1074)
40 KOG0612 Rho-associated, coiled 85.9 57 0.0012 41.4 19.5 39 274-312 543-581 (1317)
41 PF07798 DUF1640: Protein of u 85.5 39 0.00085 33.3 18.0 74 283-361 75-155 (177)
42 COG4717 Uncharacterized conser 85.4 1E+02 0.0023 38.1 20.9 94 201-296 155-248 (984)
43 KOG0971 Microtubule-associated 85.4 46 0.001 41.2 17.9 50 268-321 267-316 (1243)
44 PF07798 DUF1640: Protein of u 84.4 36 0.00079 33.5 14.3 94 227-324 58-153 (177)
45 PF09727 CortBP2: Cortactin-bi 84.2 5.8 0.00013 40.5 8.9 84 301-389 94-179 (192)
46 KOG0976 Rho/Rac1-interacting s 84.1 68 0.0015 39.4 18.4 48 275-322 285-343 (1265)
47 PRK11637 AmiB activator; Provi 84.0 68 0.0015 35.5 17.7 36 229-264 77-112 (428)
48 KOG0995 Centromere-associated 82.7 55 0.0012 38.5 16.7 217 119-349 137-393 (581)
49 KOG3915 Transcription regulato 82.5 33 0.00072 39.5 14.6 58 230-306 510-567 (641)
50 COG4942 Membrane-bound metallo 81.9 1E+02 0.0022 35.2 20.0 34 326-359 143-176 (420)
51 TIGR00606 rad50 rad50. This fa 81.7 1.6E+02 0.0035 37.5 22.2 33 232-264 893-925 (1311)
52 PF10473 CENP-F_leu_zip: Leuci 81.5 56 0.0012 32.0 14.8 110 229-357 12-121 (140)
53 PF09731 Mitofilin: Mitochondr 81.1 1.1E+02 0.0024 35.1 20.9 44 206-249 226-273 (582)
54 KOG1029 Endocytic adaptor prot 80.6 39 0.00085 41.2 14.8 109 193-307 458-572 (1118)
55 KOG0996 Structural maintenance 80.1 92 0.002 39.6 18.1 55 307-361 505-559 (1293)
56 PHA02562 46 endonuclease subun 79.7 1.1E+02 0.0024 34.4 23.5 32 229-260 215-246 (562)
57 PRK04863 mukB cell division pr 79.5 1.9E+02 0.0041 37.9 21.3 13 203-215 276-288 (1486)
58 PF04111 APG6: Autophagy prote 78.5 6.7 0.00015 42.2 7.5 42 323-364 57-98 (314)
59 PF10168 Nup88: Nuclear pore c 78.5 96 0.0021 37.4 17.5 31 293-327 634-664 (717)
60 COG0419 SbcC ATPase involved i 78.2 1.7E+02 0.0038 35.7 21.1 83 328-414 352-436 (908)
61 KOG1853 LIS1-interacting prote 78.1 1.1E+02 0.0023 33.2 16.0 110 219-347 37-147 (333)
62 KOG4787 Uncharacterized conser 77.8 33 0.00072 40.6 12.9 107 229-354 334-440 (852)
63 PF10174 Cast: RIM-binding pro 77.7 1.4E+02 0.003 36.5 18.5 63 299-361 242-311 (775)
64 PF15035 Rootletin: Ciliary ro 77.7 84 0.0018 31.8 14.7 91 226-328 15-121 (182)
65 PF05010 TACC: Transforming ac 77.3 94 0.002 32.2 19.3 48 307-354 81-128 (207)
66 PRK04778 septation ring format 77.1 1.5E+02 0.0033 34.4 18.8 51 277-327 285-335 (569)
67 KOG1103 Predicted coiled-coil 77.0 55 0.0012 36.7 13.8 160 225-418 105-292 (561)
68 PF10473 CENP-F_leu_zip: Leuci 76.8 78 0.0017 31.0 15.7 89 228-328 25-116 (140)
69 PF13851 GAS: Growth-arrest sp 76.3 94 0.002 31.6 20.3 106 222-350 22-127 (201)
70 KOG0982 Centrosomal protein Nu 75.5 78 0.0017 36.3 14.6 98 281-381 321-444 (502)
71 PF00901 Orbi_VP5: Orbivirus o 75.1 22 0.00048 41.0 10.5 19 237-255 87-105 (508)
72 PF07926 TPR_MLP1_2: TPR/MLP1/ 74.7 77 0.0017 29.9 15.5 88 229-316 5-94 (132)
73 PF14197 Cep57_CLD_2: Centroso 74.1 39 0.00085 29.2 9.5 61 227-292 5-65 (69)
74 PF00261 Tropomyosin: Tropomyo 73.2 1.2E+02 0.0025 31.3 16.2 139 218-363 83-223 (237)
75 PF15619 Lebercilin: Ciliary p 72.7 99 0.0022 31.5 13.6 108 227-355 12-136 (194)
76 KOG0976 Rho/Rac1-interacting s 72.0 58 0.0013 40.0 13.2 112 213-328 400-516 (1265)
77 PF01576 Myosin_tail_1: Myosin 71.9 1.6 3.5E-05 52.5 1.0 137 213-356 679-818 (859)
78 KOG0239 Kinesin (KAR3 subfamil 71.7 98 0.0021 37.1 15.2 138 274-418 175-316 (670)
79 PF06428 Sec2p: GDP/GTP exchan 70.8 15 0.00033 33.9 6.7 72 288-359 1-73 (100)
80 TIGR01069 mutS2 MutS2 family p 70.4 66 0.0014 38.9 13.6 53 235-287 526-578 (771)
81 PRK00409 recombination and DNA 70.2 76 0.0016 38.5 14.1 29 299-327 567-595 (782)
82 PF12325 TMF_TATA_bd: TATA ele 70.1 1E+02 0.0022 29.4 14.5 39 227-265 23-61 (120)
83 PF13514 AAA_27: AAA domain 69.9 77 0.0017 39.5 14.4 38 322-359 895-932 (1111)
84 PF09728 Taxilin: Myosin-like 69.6 1.3E+02 0.0029 32.6 14.5 72 321-407 62-133 (309)
85 PRK10884 SH3 domain-containing 69.5 83 0.0018 32.4 12.3 26 224-249 90-115 (206)
86 PRK14154 heat shock protein Gr 68.2 1E+02 0.0022 32.1 12.6 69 222-290 47-115 (208)
87 COG1340 Uncharacterized archae 67.6 2E+02 0.0042 31.6 21.5 41 323-363 165-205 (294)
88 PF09730 BicD: Microtubule-ass 67.6 1.5E+02 0.0033 36.0 15.6 160 189-378 534-701 (717)
89 KOG0964 Structural maintenance 66.6 3.6E+02 0.0078 34.3 18.5 103 307-412 298-421 (1200)
90 PF10186 Atg14: UV radiation r 66.5 1.6E+02 0.0034 30.1 18.8 19 277-295 73-91 (302)
91 TIGR01843 type_I_hlyD type I s 66.4 1.9E+02 0.0041 30.9 18.0 23 390-412 248-270 (423)
92 KOG0994 Extracellular matrix g 66.3 3.9E+02 0.0086 34.7 21.5 29 390-418 1719-1747(1758)
93 KOG4593 Mitotic checkpoint pro 65.9 2.7E+02 0.0058 33.9 16.8 191 195-404 348-542 (716)
94 PF04108 APG17: Autophagy prot 65.7 1.4E+02 0.0029 33.5 14.0 101 229-348 278-378 (412)
95 KOG0994 Extracellular matrix g 64.7 4.2E+02 0.0092 34.4 19.5 149 206-361 1471-1636(1758)
96 PF05837 CENP-H: Centromere pr 64.7 97 0.0021 28.5 10.7 72 274-345 3-87 (106)
97 PRK00409 recombination and DNA 64.6 2.2E+02 0.0047 34.7 16.3 20 253-272 514-533 (782)
98 KOG0980 Actin-binding protein 64.5 3.7E+02 0.008 33.7 20.4 110 229-349 367-478 (980)
99 PRK04778 septation ring format 63.4 2.9E+02 0.0063 32.1 19.3 48 226-273 255-307 (569)
100 TIGR02231 conserved hypothetic 63.3 80 0.0017 35.9 11.9 37 228-265 72-108 (525)
101 TIGR02680 conserved hypothetic 61.6 3.2E+02 0.0069 35.4 17.7 24 614-639 1315-1338(1353)
102 TIGR02977 phageshock_pspA phag 61.4 1.9E+02 0.0042 29.4 13.6 103 228-358 32-134 (219)
103 PF08647 BRE1: BRE1 E3 ubiquit 61.1 1.3E+02 0.0028 27.2 12.5 86 238-328 10-95 (96)
104 PF13851 GAS: Growth-arrest sp 61.0 2E+02 0.0043 29.4 18.7 110 304-418 57-173 (201)
105 PF06705 SF-assemblin: SF-asse 60.9 2.1E+02 0.0045 29.6 18.1 86 242-334 86-175 (247)
106 KOG4674 Uncharacterized conser 60.6 5.7E+02 0.012 34.5 19.6 21 261-281 1280-1300(1822)
107 COG1842 PspA Phage shock prote 60.3 2.2E+02 0.0048 29.7 16.3 143 229-417 33-181 (225)
108 PRK03918 chromosome segregatio 58.8 3.9E+02 0.0084 32.1 21.6 32 229-260 181-212 (880)
109 KOG0163 Myosin class VI heavy 58.7 3.1E+02 0.0067 34.1 15.7 77 321-405 999-1076(1259)
110 PF08317 Spc7: Spc7 kinetochor 58.7 2.7E+02 0.0058 30.1 16.5 66 278-346 181-246 (325)
111 PF07926 TPR_MLP1_2: TPR/MLP1/ 58.6 1.2E+02 0.0026 28.6 10.4 47 221-274 53-99 (132)
112 PF06818 Fez1: Fez1; InterPro 58.0 2.1E+02 0.0046 29.7 12.7 79 300-385 82-172 (202)
113 PF04156 IncA: IncA protein; 57.9 1.9E+02 0.0041 28.2 15.7 34 232-265 79-112 (191)
114 TIGR01069 mutS2 MutS2 family p 57.7 3.1E+02 0.0067 33.5 16.0 16 254-269 510-525 (771)
115 smart00498 FH2 Formin Homology 57.7 2.1E+02 0.0045 32.1 13.7 116 227-342 310-431 (432)
116 KOG0995 Centromere-associated 57.4 4E+02 0.0087 31.8 18.2 44 311-354 427-470 (581)
117 PF05700 BCAS2: Breast carcino 56.9 2.4E+02 0.0051 29.0 17.7 120 228-358 98-217 (221)
118 PRK04863 mukB cell division pr 56.3 6.1E+02 0.013 33.6 22.2 6 613-618 765-770 (1486)
119 PRK09039 hypothetical protein; 56.1 1.7E+02 0.0036 32.1 12.4 59 213-271 66-132 (343)
120 PF14915 CCDC144C: CCDC144C pr 55.6 3.2E+02 0.007 30.2 18.4 161 229-396 8-194 (305)
121 COG2433 Uncharacterized conser 55.5 1.8E+02 0.0038 34.9 12.9 33 15-47 66-98 (652)
122 PF05911 DUF869: Plant protein 55.2 4.2E+02 0.0091 32.6 16.4 117 225-360 587-717 (769)
123 KOG1029 Endocytic adaptor prot 54.4 5.3E+02 0.011 32.3 16.6 60 299-358 445-507 (1118)
124 cd07652 F-BAR_Rgd1 The F-BAR ( 54.4 1.4E+02 0.0031 30.8 11.0 104 279-412 91-196 (234)
125 COG2433 Uncharacterized conser 54.3 2.6E+02 0.0057 33.6 14.0 40 335-379 479-518 (652)
126 cd07651 F-BAR_PombeCdc15_like 54.2 2.6E+02 0.0056 28.6 15.9 110 242-363 23-133 (236)
127 PRK14140 heat shock protein Gr 53.7 2.7E+02 0.0058 28.6 13.4 68 223-290 33-100 (191)
128 PF01576 Myosin_tail_1: Myosin 53.5 4.4 9.5E-05 49.0 0.0 93 229-321 358-452 (859)
129 PRK14158 heat shock protein Gr 53.4 1.5E+02 0.0031 30.5 10.7 49 223-271 36-84 (194)
130 PF03245 Phage_lysis: Bacterio 53.3 84 0.0018 29.8 8.4 57 273-329 6-62 (125)
131 PF09727 CortBP2: Cortactin-bi 53.3 2.6E+02 0.0056 28.9 12.4 73 243-330 115-190 (192)
132 KOG0993 Rab5 GTPase effector R 53.1 1.9E+02 0.0042 33.3 12.3 128 229-362 40-173 (542)
133 PF05667 DUF812: Protein of un 52.9 4.1E+02 0.0088 31.7 15.5 17 461-477 505-523 (594)
134 PF10186 Atg14: UV radiation r 52.8 2.7E+02 0.0058 28.4 17.9 26 236-261 22-47 (302)
135 TIGR03185 DNA_S_dndD DNA sulfu 52.1 4.6E+02 0.01 30.9 19.6 26 239-264 389-414 (650)
136 PRK14139 heat shock protein Gr 51.9 1.2E+02 0.0026 30.9 9.7 41 229-269 34-74 (185)
137 PF09731 Mitofilin: Mitochondr 51.3 4.4E+02 0.0095 30.4 19.1 23 232-254 249-271 (582)
138 PRK14143 heat shock protein Gr 51.1 3.2E+02 0.0069 29.0 13.0 48 228-275 68-115 (238)
139 KOG4643 Uncharacterized coiled 50.9 6.5E+02 0.014 32.3 20.4 219 226-462 473-721 (1195)
140 PRK14145 heat shock protein Gr 50.7 1.3E+02 0.0029 31.0 9.9 43 227-269 45-87 (196)
141 TIGR01000 bacteriocin_acc bact 50.6 4.1E+02 0.0088 29.8 20.6 26 227-252 97-122 (457)
142 PF06785 UPF0242: Uncharacteri 50.4 1.5E+02 0.0031 33.4 10.6 65 231-314 110-174 (401)
143 PF04849 HAP1_N: HAP1 N-termin 50.2 2.9E+02 0.0062 30.5 12.8 189 218-419 88-303 (306)
144 PF15254 CCDC14: Coiled-coil d 50.1 5.1E+02 0.011 32.1 15.7 40 296-335 488-527 (861)
145 COG0419 SbcC ATPase involved i 49.6 5.8E+02 0.013 31.4 22.6 18 205-222 472-490 (908)
146 TIGR03185 DNA_S_dndD DNA sulfu 49.6 5E+02 0.011 30.6 19.8 13 205-217 184-196 (650)
147 PRK09174 F0F1 ATP synthase sub 49.4 3.1E+02 0.0067 28.1 13.6 75 285-359 88-164 (204)
148 PRK14156 heat shock protein Gr 49.3 1E+02 0.0022 31.2 8.7 65 231-323 31-95 (177)
149 PF09304 Cortex-I_coil: Cortex 48.9 2.4E+02 0.0053 26.8 14.3 71 227-302 16-86 (107)
150 PRK14146 heat shock protein Gr 48.2 1.3E+02 0.0028 31.3 9.5 50 228-277 55-104 (215)
151 KOG0250 DNA repair protein RAD 48.0 7.1E+02 0.015 31.9 21.5 22 592-613 617-638 (1074)
152 PTZ00266 NIMA-related protein 47.5 2.4E+02 0.0053 35.6 13.2 10 582-591 833-842 (1021)
153 PF11932 DUF3450: Protein of u 47.3 3.4E+02 0.0074 28.0 14.6 96 240-347 20-119 (251)
154 PLN03188 kinesin-12 family pro 47.2 7.9E+02 0.017 32.2 18.1 35 221-255 1059-1093(1320)
155 PRK14151 heat shock protein Gr 46.9 3.2E+02 0.007 27.6 12.5 64 226-289 19-82 (176)
156 KOG0978 E3 ubiquitin ligase in 46.3 2E+02 0.0043 35.0 11.7 89 229-317 526-623 (698)
157 KOG4403 Cell surface glycoprot 46.3 1.3E+02 0.0029 34.7 9.8 24 304-327 304-327 (575)
158 KOG4674 Uncharacterized conser 46.0 5.8E+02 0.012 34.5 16.3 94 282-376 1026-1126(1822)
159 PF05837 CENP-H: Centromere pr 45.3 2.5E+02 0.0054 25.9 10.1 73 229-301 5-78 (106)
160 PF15236 CCDC66: Coiled-coil d 44.9 3.4E+02 0.0074 27.3 12.8 67 260-338 62-128 (157)
161 PF05667 DUF812: Protein of un 44.8 6.1E+02 0.013 30.2 16.9 43 228-270 329-371 (594)
162 PF11559 ADIP: Afadin- and alp 44.7 2.8E+02 0.0062 26.3 11.4 102 225-334 36-140 (151)
163 KOG4572 Predicted DNA-binding 44.7 4.7E+02 0.01 32.9 14.3 45 371-419 1065-1109(1424)
164 KOG4302 Microtubule-associated 44.5 6.4E+02 0.014 30.7 15.4 143 202-345 13-200 (660)
165 KOG0288 WD40 repeat protein Ti 44.4 4.3E+02 0.0093 30.6 13.3 35 367-401 106-140 (459)
166 PRK01156 chromosome segregatio 44.4 6.6E+02 0.014 30.5 21.0 17 204-220 147-163 (895)
167 PF08317 Spc7: Spc7 kinetochor 44.3 4.4E+02 0.0096 28.5 16.2 33 324-356 231-263 (325)
168 KOG4661 Hsp27-ERE-TATA-binding 43.7 2E+02 0.0044 34.3 11.0 14 323-336 663-676 (940)
169 KOG0804 Cytoplasmic Zn-finger 43.6 6E+02 0.013 29.8 14.9 64 234-311 347-412 (493)
170 PF14915 CCDC144C: CCDC144C pr 43.5 4.9E+02 0.011 28.8 15.2 107 227-348 179-289 (305)
171 PF04111 APG6: Autophagy prote 43.5 4.7E+02 0.01 28.5 13.6 27 390-416 161-187 (314)
172 PRK14147 heat shock protein Gr 43.4 1.5E+02 0.0033 29.7 8.9 41 229-269 20-60 (172)
173 PF15254 CCDC14: Coiled-coil d 43.1 3.6E+02 0.0079 33.3 13.2 78 276-356 382-474 (861)
174 PRK14162 heat shock protein Gr 43.1 3.9E+02 0.0085 27.5 12.9 64 227-290 39-102 (194)
175 PF14643 DUF4455: Domain of un 43.0 5.2E+02 0.011 29.5 14.1 100 247-348 17-119 (473)
176 KOG4364 Chromatin assembly fac 42.8 5.8E+02 0.013 31.3 14.5 44 289-332 294-337 (811)
177 KOG0979 Structural maintenance 42.4 8.5E+02 0.018 31.2 18.8 176 233-413 180-392 (1072)
178 PF14523 Syntaxin_2: Syntaxin- 42.3 2.4E+02 0.0051 24.7 9.6 67 239-328 31-97 (102)
179 KOG0249 LAR-interacting protei 42.3 7.6E+02 0.017 30.6 15.8 66 319-391 219-284 (916)
180 PF05615 THOC7: Tho complex su 41.3 2E+02 0.0044 27.1 9.0 56 302-357 46-101 (139)
181 PF02185 HR1: Hr1 repeat; Int 41.3 1E+02 0.0022 26.0 6.4 60 282-359 2-62 (70)
182 PRK11637 AmiB activator; Provi 40.9 5.5E+02 0.012 28.6 22.3 20 232-251 45-64 (428)
183 PRK13428 F0F1 ATP synthase sub 40.9 5.9E+02 0.013 29.0 15.4 65 295-359 46-112 (445)
184 PRK01156 chromosome segregatio 40.1 7.6E+02 0.017 30.0 23.7 30 229-258 471-500 (895)
185 KOG0978 E3 ubiquitin ligase in 40.0 7.9E+02 0.017 30.1 20.9 121 231-358 397-524 (698)
186 KOG0980 Actin-binding protein 39.8 8.8E+02 0.019 30.6 20.3 89 233-326 402-490 (980)
187 PF09763 Sec3_C: Exocyst compl 39.3 2.8E+02 0.006 32.9 11.6 37 300-338 3-39 (701)
188 PRK14153 heat shock protein Gr 39.2 4.3E+02 0.0093 27.3 11.5 41 229-269 35-75 (194)
189 PF13935 Ead_Ea22: Ead/Ea22-li 38.7 3E+02 0.0066 26.4 9.9 25 225-249 65-89 (139)
190 PRK14148 heat shock protein Gr 38.3 2.6E+02 0.0056 28.8 9.8 68 228-323 41-108 (195)
191 PF09636 XkdW: XkdW protein; 38.0 11 0.00023 35.6 0.0 39 282-320 66-104 (108)
192 PF06785 UPF0242: Uncharacteri 37.5 6.6E+02 0.014 28.5 15.2 63 296-358 100-169 (401)
193 KOG4348 Adaptor protein CMS/SE 36.9 1.3E+02 0.0029 34.7 8.1 55 233-309 568-622 (627)
194 COG3524 KpsE Capsule polysacch 36.8 82 0.0018 34.9 6.3 41 209-249 205-245 (372)
195 cd07658 F-BAR_NOSTRIN The F-BA 36.7 5E+02 0.011 26.9 15.4 38 331-373 190-227 (239)
196 PRK14155 heat shock protein Gr 36.7 2.3E+02 0.0049 29.4 9.2 67 230-324 16-82 (208)
197 PRK10929 putative mechanosensi 36.5 1.1E+03 0.023 30.6 19.0 125 221-357 167-313 (1109)
198 COG4942 Membrane-bound metallo 36.4 7.2E+02 0.016 28.7 17.0 103 227-330 66-178 (420)
199 PF01025 GrpE: GrpE; InterPro 36.1 92 0.002 29.7 6.0 20 303-322 59-78 (165)
200 PF05622 HOOK: HOOK protein; 35.9 15 0.00033 43.3 0.8 57 304-360 234-290 (713)
201 KOG3915 Transcription regulato 35.5 3.5E+02 0.0076 31.7 11.1 17 256-272 543-559 (641)
202 PF09036 Bcr-Abl_Oligo: Bcr-Ab 35.5 1.2E+02 0.0025 27.3 5.9 42 229-270 28-69 (79)
203 PF10267 Tmemb_cc2: Predicted 35.5 3.2E+02 0.007 31.0 10.8 41 320-363 248-288 (395)
204 PRK00106 hypothetical protein; 35.3 8.2E+02 0.018 28.9 20.4 10 282-291 80-89 (535)
205 PF09755 DUF2046: Uncharacteri 35.3 6.6E+02 0.014 27.9 18.4 148 227-391 106-278 (310)
206 TIGR03752 conj_TIGR03752 integ 34.9 4.5E+02 0.0099 30.7 11.9 59 229-295 61-119 (472)
207 PF06005 DUF904: Protein of un 34.8 1.8E+02 0.0039 25.5 6.9 59 220-286 11-69 (72)
208 PF11855 DUF3375: Protein of u 34.8 4.9E+02 0.011 29.9 12.3 118 205-324 99-225 (478)
209 PF13863 DUF4200: Domain of un 34.6 3.6E+02 0.0078 24.6 16.8 50 290-339 69-118 (126)
210 KOG2072 Translation initiation 34.4 1.1E+03 0.023 29.9 17.3 30 263-292 715-744 (988)
211 PF06428 Sec2p: GDP/GTP exchan 34.1 2.6E+02 0.0057 26.0 8.3 63 235-315 2-64 (100)
212 KOG4807 F-actin binding protei 34.1 2.7E+02 0.0058 32.0 9.8 84 216-322 374-462 (593)
213 PF07083 DUF1351: Protein of u 34.0 3.8E+02 0.0081 27.6 10.3 69 274-342 42-124 (215)
214 PRK10884 SH3 domain-containing 33.7 5.6E+02 0.012 26.5 12.2 27 300-326 137-163 (206)
215 KOG4466 Component of histone d 33.4 6.9E+02 0.015 27.5 14.5 20 250-269 18-37 (291)
216 KOG4677 Golgi integral membran 33.0 8.7E+02 0.019 28.6 14.0 73 174-264 168-240 (554)
217 PF03962 Mnd1: Mnd1 family; I 32.9 5.3E+02 0.012 26.1 11.6 12 201-212 28-39 (188)
218 cd07673 F-BAR_FCHO2 The F-BAR 32.8 6.2E+02 0.013 26.8 16.9 43 296-342 155-198 (269)
219 PF14932 HAUS-augmin3: HAUS au 32.8 5.4E+02 0.012 27.0 11.4 81 275-358 69-149 (256)
220 TIGR00634 recN DNA repair prot 32.4 8.5E+02 0.018 28.3 17.7 63 200-266 138-200 (563)
221 KOG4809 Rab6 GTPase-interactin 32.3 9E+02 0.02 29.1 13.7 165 213-411 186-403 (654)
222 PRK10698 phage shock protein P 32.2 4.5E+02 0.0098 27.2 10.6 93 279-414 29-132 (222)
223 PRK14161 heat shock protein Gr 32.0 3.6E+02 0.0078 27.3 9.6 22 302-323 66-87 (178)
224 PF08614 ATG16: Autophagy prot 31.9 5.3E+02 0.012 25.8 12.4 88 223-315 98-185 (194)
225 PF14197 Cep57_CLD_2: Centroso 31.8 2.5E+02 0.0054 24.4 7.3 14 346-359 49-62 (69)
226 PF05103 DivIVA: DivIVA protei 31.5 40 0.00087 30.7 2.6 16 254-269 20-35 (131)
227 smart00787 Spc7 Spc7 kinetocho 31.5 7.3E+02 0.016 27.2 16.8 70 278-350 176-245 (312)
228 PRK13454 F0F1 ATP synthase sub 31.5 5.3E+02 0.012 25.6 11.9 94 268-362 50-145 (181)
229 PRK14160 heat shock protein Gr 30.9 6.4E+02 0.014 26.4 13.0 44 230-273 64-107 (211)
230 COG1579 Zn-ribbon protein, pos 30.8 6.9E+02 0.015 26.7 17.1 33 228-260 32-64 (239)
231 KOG2070 Guanine nucleotide exc 30.7 7.7E+02 0.017 29.4 12.8 178 116-307 457-656 (661)
232 PF09798 LCD1: DNA damage chec 30.5 1.4E+02 0.0031 35.8 7.4 48 240-295 3-50 (654)
233 cd04779 HTH_MerR-like_sg4 Heli 30.2 1E+02 0.0023 29.5 5.2 15 195-209 52-66 (134)
234 PF14931 IFT20: Intraflagellar 30.0 2.6E+02 0.0056 26.7 7.7 81 333-416 23-108 (120)
235 PF13747 DUF4164: Domain of un 29.6 4.2E+02 0.0092 23.9 10.0 50 306-355 36-85 (89)
236 cd07653 F-BAR_CIP4-like The F- 29.5 6.2E+02 0.013 25.8 15.4 76 284-359 94-169 (251)
237 PF15175 SPATA24: Spermatogene 29.5 6E+02 0.013 25.6 12.4 82 254-343 2-83 (153)
238 COG5245 DYN1 Dynein, heavy cha 29.4 5.7E+02 0.012 34.9 12.2 183 234-419 2088-2345(3164)
239 PF11932 DUF3450: Protein of u 29.4 6.5E+02 0.014 26.0 15.1 29 237-265 38-66 (251)
240 PRK14144 heat shock protein Gr 29.4 4.3E+02 0.0092 27.4 9.7 67 229-323 47-113 (199)
241 PTZ00266 NIMA-related protein 29.3 6.7E+02 0.015 32.0 13.0 6 212-217 422-427 (1021)
242 PRK14163 heat shock protein Gr 29.1 7E+02 0.015 26.2 12.7 62 230-291 43-104 (214)
243 PF04977 DivIC: Septum formati 29.1 2.2E+02 0.0047 23.6 6.5 35 226-260 16-50 (80)
244 PF14942 Muted: Organelle biog 29.1 5.7E+02 0.012 25.2 14.2 55 253-307 19-75 (145)
245 PRK10246 exonuclease subunit S 28.7 1.3E+03 0.028 29.2 21.2 19 230-248 619-637 (1047)
246 PF11262 Tho2: Transcription f 28.6 1.7E+02 0.0037 31.4 7.0 52 229-280 48-100 (298)
247 KOG1103 Predicted coiled-coil 28.6 9.4E+02 0.02 27.6 17.7 68 258-325 117-190 (561)
248 PF13935 Ead_Ea22: Ead/Ea22-li 28.5 4.1E+02 0.0088 25.5 8.9 18 331-348 120-137 (139)
249 PF12210 Hrs_helical: Hepatocy 28.1 5.1E+02 0.011 24.3 10.4 88 201-301 6-95 (96)
250 KOG0993 Rab5 GTPase effector R 28.0 1E+03 0.022 27.8 13.6 125 227-358 345-490 (542)
251 TIGR02680 conserved hypothetic 27.9 1.5E+03 0.032 29.6 21.1 24 229-252 758-781 (1353)
252 PF09787 Golgin_A5: Golgin sub 27.6 1E+03 0.022 27.6 22.2 36 258-293 158-193 (511)
253 KOG1265 Phospholipase C [Lipid 27.3 1.4E+03 0.031 29.2 16.2 67 349-418 1114-1180(1189)
254 cd07648 F-BAR_FCHO The F-BAR ( 27.2 7.1E+02 0.015 25.7 15.9 8 466-473 236-243 (261)
255 PF15290 Syntaphilin: Golgi-lo 27.0 8E+02 0.017 27.2 11.5 88 229-328 70-157 (305)
256 KOG0239 Kinesin (KAR3 subfamil 26.9 1.2E+03 0.026 28.3 15.6 42 224-265 179-220 (670)
257 PF14712 Snapin_Pallidin: Snap 26.6 4.3E+02 0.0093 23.0 11.0 77 226-309 6-82 (92)
258 PF09730 BicD: Microtubule-ass 26.4 1.2E+03 0.026 28.7 14.0 48 229-276 354-401 (717)
259 PF04778 LMP: LMP repeated reg 26.2 5E+02 0.011 26.3 9.1 76 233-309 71-150 (157)
260 TIGR01843 type_I_hlyD type I s 26.2 8.3E+02 0.018 26.1 16.0 9 347-355 249-257 (423)
261 cd07625 BAR_Vps17p The Bin/Amp 26.1 5.7E+02 0.012 26.9 10.2 15 324-338 213-227 (230)
262 COG1322 Predicted nuclease of 26.1 1.1E+03 0.023 27.4 15.0 49 228-276 78-126 (448)
263 cd07625 BAR_Vps17p The Bin/Amp 26.1 7.9E+02 0.017 25.9 14.7 52 262-313 141-193 (230)
264 KOG0288 WD40 repeat protein Ti 25.8 1.1E+03 0.024 27.4 15.3 32 309-340 100-131 (459)
265 cd07673 F-BAR_FCHO2 The F-BAR 25.2 8.4E+02 0.018 25.9 18.5 47 213-265 4-53 (269)
266 PF05700 BCAS2: Breast carcino 24.6 7.8E+02 0.017 25.3 11.3 36 229-264 145-180 (221)
267 PF04871 Uso1_p115_C: Uso1 / p 24.5 6.5E+02 0.014 24.3 10.2 11 369-379 85-95 (136)
268 PRK06231 F0F1 ATP synthase sub 24.3 7.7E+02 0.017 25.1 13.7 71 289-359 87-159 (205)
269 PF03962 Mnd1: Mnd1 family; I 24.3 7.6E+02 0.016 25.0 12.0 9 213-221 54-62 (188)
270 PF10454 DUF2458: Protein of u 24.2 7E+02 0.015 24.6 11.2 15 240-254 26-40 (150)
271 PF06818 Fez1: Fez1; InterPro 24.0 1.9E+02 0.0041 30.1 6.1 40 241-281 138-177 (202)
272 KOG0018 Structural maintenance 23.6 1.7E+03 0.037 28.9 18.4 192 210-411 217-442 (1141)
273 PRK14141 heat shock protein Gr 23.2 8.7E+02 0.019 25.4 12.3 60 232-291 36-95 (209)
274 PRK14157 heat shock protein Gr 23.1 5E+02 0.011 27.5 9.0 39 231-269 81-119 (227)
275 PF14073 Cep57_CLD: Centrosome 23.0 8.4E+02 0.018 25.1 16.5 154 228-395 2-164 (178)
276 PF01991 vATP-synt_E: ATP synt 23.0 6.9E+02 0.015 24.1 12.9 15 237-251 4-18 (198)
277 KOG3612 PHD Zn-finger protein 22.8 5.9E+02 0.013 30.4 10.2 70 294-371 463-536 (588)
278 cd07686 F-BAR_Fer The F-BAR (F 22.7 3.9E+02 0.0086 28.2 8.2 35 291-325 101-136 (234)
279 PF07200 Mod_r: Modifier of ru 22.6 6.6E+02 0.014 23.7 15.5 121 223-378 23-143 (150)
280 cd07674 F-BAR_FCHO1 The F-BAR 22.6 9E+02 0.02 25.3 20.4 11 409-419 238-248 (261)
281 PF05852 DUF848: Gammaherpesvi 22.3 3.4E+02 0.0074 27.0 7.2 48 227-293 61-108 (146)
282 PF13514 AAA_27: AAA domain 22.0 1.7E+03 0.036 28.2 22.6 32 233-264 617-648 (1111)
283 PF15294 Leu_zip: Leucine zipp 22.0 8.4E+02 0.018 26.7 10.7 82 228-329 133-217 (278)
284 PF09969 DUF2203: Uncharacteri 21.7 3E+02 0.0065 26.2 6.5 39 216-255 3-41 (120)
285 KOG0243 Kinesin-like protein [ 21.7 1.4E+03 0.03 29.5 13.6 117 213-330 427-560 (1041)
286 PTZ00121 MAEBL; Provisional 21.5 2.2E+03 0.047 29.3 17.3 152 237-396 1112-1263(2084)
287 PF05010 TACC: Transforming ac 21.4 9.4E+02 0.02 25.1 17.4 27 321-347 180-206 (207)
288 PRK04654 sec-independent trans 21.3 4.2E+02 0.0091 28.0 7.9 14 282-295 42-55 (214)
289 PRK00106 hypothetical protein; 21.3 1.4E+03 0.031 27.1 17.5 14 293-306 103-116 (535)
290 PF15070 GOLGA2L5: Putative go 21.2 1.5E+03 0.032 27.3 23.0 132 223-357 75-215 (617)
291 TIGR01010 BexC_CtrB_KpsE polys 21.0 5E+02 0.011 28.0 8.9 96 213-327 200-303 (362)
292 PF06295 DUF1043: Protein of u 20.9 2.8E+02 0.0062 26.3 6.2 39 229-267 27-65 (128)
293 TIGR00634 recN DNA repair prot 20.4 1.4E+03 0.03 26.6 18.4 68 243-310 156-234 (563)
294 cd07652 F-BAR_Rgd1 The F-BAR ( 20.4 9.7E+02 0.021 24.8 12.5 117 242-369 23-142 (234)
295 TIGR01000 bacteriocin_acc bact 20.3 1.2E+03 0.027 26.1 18.2 17 340-356 246-262 (457)
296 COG1842 PspA Phage shock prote 20.1 1E+03 0.022 25.0 16.4 111 279-395 29-143 (225)
No 1
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.17 E-value=0.016 Score=67.76 Aligned_cols=174 Identities=26% Similarity=0.322 Sum_probs=100.7
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005989 218 LEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLR 297 (666)
Q Consensus 218 leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~R 297 (666)
|....-..=+-|..|+.|-++.+.++..|.+.++.++..|..|=|+|++|+..+- .+-.+|..|||.|
T Consensus 451 l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~------------~lEkQL~eErk~r 518 (697)
T PF09726_consen 451 LTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRA------------SLEKQLQEERKAR 518 (697)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
Confidence 4443344446788999999999999999999999999999999999999987443 4566799999999
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhh--hhhhhhhHHH
Q 005989 298 KCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHA--HMKNADRLIL 375 (666)
Q Consensus 298 rr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~--ee~eeER~mL 375 (666)
+..|.- -++-++.+.+.-. .--|.=|..+.=||.-|+.|-+++..-++.+..|..+....+. .|.+.|-+||
T Consensus 519 ~~ee~~---aar~~~~~~~~r~---e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L 592 (697)
T PF09726_consen 519 KEEEEK---AARALAQAQATRQ---ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVL 592 (697)
T ss_pred hHHHHh---hhhccccchhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 998763 3332111111100 0011123333445555555555555555555544444321111 2234455555
Q ss_pred HHhhhhhHHhhhhhHhhhhcccchhhHHHHHHHHHHHHHHhh
Q 005989 376 HISESWLDERMQMKIAETQNSLSDKNTILDKLRLDIENFLQA 417 (666)
Q Consensus 376 q~AEvWrEERvQMKL~eAk~~leeK~s~~dkL~~elE~FL~s 417 (666)
..|=.= ||-| -..||...++=.++..||=.-|..
T Consensus 593 ~~aL~a----mqdk----~~~LE~sLsaEtriKldLfsaLg~ 626 (697)
T PF09726_consen 593 MSALSA----MQDK----NQHLENSLSAETRIKLDLFSALGD 626 (697)
T ss_pred HHHHHH----HHHH----HHHHHHhhhHHHHHHHHHHHHHHH
Confidence 444321 1111 123455555555666666666654
No 2
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.62 E-value=0.19 Score=57.55 Aligned_cols=187 Identities=20% Similarity=0.276 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQV----------------AEEKIIRKDKERNRIKAAVQSWKDELED 292 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kql----------------aEeK~~wK~KE~eki~aai~slk~ELe~ 292 (666)
|..|+.|++.++.+..+..++....+.+++..+..+ -||....=.+|-.+|...|..++.+|++
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 566666666666666666666666665555333222 2344445556889999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhh
Q 005989 293 ERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKA---RILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKN 369 (666)
Q Consensus 293 ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~Erka---RellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~e 369 (666)
|.-+|..++.-..=|-.||.=++...+..+.|+-.-... -..=+..-+||+.-|+|.+++-+...+...+.+ |.=
T Consensus 195 Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~di--E~~ 272 (546)
T KOG0977|consen 195 ETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDI--ESW 272 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHH
Confidence 999999999999999999999888888777665432211 123466778899999988888887766555432 111
Q ss_pred hhhHHHH----------HhhhhhHHhhhhhHh----hhhcc-cchhhHHHHHHHHHHHHHHhh
Q 005989 370 ADRLILH----------ISESWLDERMQMKIA----ETQNS-LSDKNTILDKLRLDIENFLQA 417 (666)
Q Consensus 370 eER~mLq----------~AEvWrEERvQMKL~----eAk~~-leeK~s~~dkL~~elE~FL~s 417 (666)
-.+++=. ...--|||.+.|+-. -||+. ||..|+.+.+...+|+--|..
T Consensus 273 Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e 335 (546)
T KOG0977|consen 273 YKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDE 335 (546)
T ss_pred HHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhh
Confidence 1122111 122356776666533 24433 666777777777777666554
No 3
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.50 E-value=0.57 Score=53.85 Aligned_cols=118 Identities=22% Similarity=0.347 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhc----hHHHHHHHhcCcchhhhhhh-hhhhH
Q 005989 300 SESLHRKLARDLSDMKSSFSNILKELERERKARILLE-NLCDEFAKGIRD----YEEEVRLLRHKPEMDHAHMK-NADRL 373 (666)
Q Consensus 300 ~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE-~vCdElAk~I~e----~kaEve~lk~es~k~~~ee~-eeER~ 373 (666)
++.-.-.|++||+++.+.=.+.+.||-.-|-.-.=|. .+||. +-.+++ ...|...|.+.++.. ++++ +-.++
T Consensus 302 Sqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~-~l~lke~~~q~~qEk~~l~~~~e~~-k~~ie~L~~e 379 (546)
T PF07888_consen 302 SQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADA-SLELKEGRSQWAQEKQALQHSAEAD-KDEIEKLSRE 379 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHH
Confidence 4445566888888888877788888877664322222 23332 223333 333444455433332 1233 34455
Q ss_pred HHHHhhhhhHHhhh----------------hhHhhhhcccchhhHHHHHHHHHHHHHHhhcc
Q 005989 374 ILHISESWLDERMQ----------------MKIAETQNSLSDKNTILDKLRLDIENFLQAKH 419 (666)
Q Consensus 374 mLq~AEvWrEERvQ----------------MKL~eAk~~leeK~s~~dkL~~elE~FL~sk~ 419 (666)
+.++++...|||++ +.|+|++-.|.|+.+.+-.++-|=|-+...++
T Consensus 380 l~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQ 441 (546)
T PF07888_consen 380 LQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQ 441 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667766677664 56666666677777766666666666666554
No 4
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.47 E-value=0.082 Score=62.08 Aligned_cols=70 Identities=29% Similarity=0.347 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 228 LVKALKMELDHSQTKIKELLQE--------------KQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDE 293 (666)
Q Consensus 228 lv~aL~~EL~~Ar~~I~eL~~E--------------~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~E 293 (666)
=|+.|+.||+++|..=+||-.. -+..+++.|.|..++.+=. +.+++=+..++.|-..|.+|
T Consensus 426 dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~-----~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 426 DVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV-----QARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 4778888888877665555544 2223344444444443322 23333346777888888888
Q ss_pred HHHhhhhHH
Q 005989 294 RKLRKCSES 302 (666)
Q Consensus 294 Rk~Rrr~E~ 302 (666)
|+.|..+|.
T Consensus 501 ~~~R~~lEk 509 (697)
T PF09726_consen 501 RRQRASLEK 509 (697)
T ss_pred HHHHHHHHH
Confidence 888887774
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.18 E-value=0.57 Score=60.45 Aligned_cols=124 Identities=26% Similarity=0.407 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 005989 235 ELDHSQTKIKELLQEKQTERQEVNDLMKQV--AEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLS 312 (666)
Q Consensus 235 EL~~Ar~~I~eL~~E~~s~~~ei~~l~kql--aEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELa 312 (666)
|+..-+.+|..|.+|++.-...+.+|.-.+ .+||+.--+|...|+...|+++...|+.|++.|..+|...+||.-||.
T Consensus 972 e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~ 1051 (1930)
T KOG0161|consen 972 EINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELK 1051 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444433 456777888899999999999999999999999999999999988884
Q ss_pred HhhHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhc
Q 005989 313 DMKSSF---------------------SNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRH 358 (666)
Q Consensus 313 e~K~s~---------------------~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~ 358 (666)
..+.+. .+....++.+.....-+...-.||..+|.+.+++++..+.
T Consensus 1052 ~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~ 1118 (1930)
T KOG0161|consen 1052 DLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERA 1118 (1930)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333 2333344445555555666666666666666666655443
No 6
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.15 E-value=0.79 Score=55.25 Aligned_cols=138 Identities=22% Similarity=0.267 Sum_probs=107.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 222 HVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVND---------LMKQVAEEKIIRKDKERNRIKAAVQSWKDELED 292 (666)
Q Consensus 222 ~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~---------l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ 292 (666)
.+--|.-+.-|+.||.+||...++++.-+..++.+|+. |=|-+|||++--=--|-+-.+..|++|-.+||-
T Consensus 271 kSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEI 350 (1243)
T KOG0971|consen 271 KSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEI 350 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667889999999999999999888888777665 458899999977777777777777777666654
Q ss_pred HHH---------------HhhhhHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchH
Q 005989 293 ERK---------------LRKCSESLHRKLARDL-------SDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYE 350 (666)
Q Consensus 293 ERk---------------~Rrr~E~ln~KL~~EL-------ae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~k 350 (666)
=|- -=+++|.-|.||-.-| +..|.-..++.|++|+-+-.-.-|+.+-.-|-+.|...+
T Consensus 351 LKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aE 430 (1243)
T KOG0971|consen 351 LKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAE 430 (1243)
T ss_pred HHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 222 1368999999998766 455666778899999888888888888888888888888
Q ss_pred HHHHHHhcC
Q 005989 351 EEVRLLRHK 359 (666)
Q Consensus 351 aEve~lk~e 359 (666)
.-|-.|+..
T Consensus 431 s~iadlkEQ 439 (1243)
T KOG0971|consen 431 STIADLKEQ 439 (1243)
T ss_pred HHHHHHHHH
Confidence 888777754
No 7
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.94 E-value=0.35 Score=50.24 Aligned_cols=116 Identities=21% Similarity=0.322 Sum_probs=74.0
Q ss_pred HHhccccccccccHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 005989 213 NRIWSLEEQHVSDIA-LVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEE--KIIRKDKERNRIKAAVQSWKDE 289 (666)
Q Consensus 213 nrIw~leeq~~s~~s-lv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEe--K~~wK~KE~eki~aai~slk~E 289 (666)
..|+.+.+.....++ +-..+..||..+|..|..+..++....-+++.+...+.+= |.....+.+..+..-|..++.+
T Consensus 32 ~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ 111 (312)
T PF00038_consen 32 SEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKD 111 (312)
T ss_dssp HHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 355556666444444 5677888888888888888777766655555544444432 2222244666777788888888
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 005989 290 LEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERE 328 (666)
Q Consensus 290 Le~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~E 328 (666)
|+.+-..|-.+|.--.-|-.||.-.+.....-+.+|...
T Consensus 112 ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~ 150 (312)
T PF00038_consen 112 LDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQ 150 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 888888888888888888888877776666666665543
No 8
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.90 E-value=7.7 Score=48.50 Aligned_cols=111 Identities=21% Similarity=0.292 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005989 232 LKMELDHSQTKIKELLQEKQT-----ERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRK 306 (666)
Q Consensus 232 L~~EL~~Ar~~I~eL~~E~~s-----~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 306 (666)
+-.||+.+..+++-.+.|.+. .++++.-. ++|++-...+..++.+-|+.+++||++..+-..++-.-+.|
T Consensus 466 ~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~-----~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~k 540 (1317)
T KOG0612|consen 466 MDKELEETIEKLKSEESELQREQKALLQHEQKEV-----EEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEK 540 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344666666666555555543 22333333 34444445578889999999999999999999999889999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005989 307 LARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIR 347 (666)
Q Consensus 307 L~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~ 347 (666)
+..+..++..+..-+.-+.+.++|-|...++.|..+-....
T Consensus 541 v~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e 581 (1317)
T KOG0612|consen 541 VNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE 581 (1317)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh
Confidence 99999988888888888999999999999999988765544
No 9
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.70 E-value=2.6 Score=48.73 Aligned_cols=165 Identities=16% Similarity=0.242 Sum_probs=96.5
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005989 218 LEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLR 297 (666)
Q Consensus 218 leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~R 297 (666)
+.++..++-.-+..|..||.-|-+.=...++|-...+-+.+.|-.++++..+.||.-. .......+.++...+.. +
T Consensus 295 ~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~-~q~~qEk~~l~~~~e~~---k 370 (546)
T PF07888_consen 295 AQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGR-SQWAQEKQALQHSAEAD---K 370 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh---H
Confidence 3455445555566666666666666667777777777788889889999888885421 11111112222211111 3
Q ss_pred hhhHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhHH
Q 005989 298 KCSESLHRKL---ARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLI 374 (666)
Q Consensus 298 rr~E~ln~KL---~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~m 374 (666)
.+++.|+..| ++-|.|-++.-.++-++|-+|+-++.+ .|-|.-++|.|+++-++.+..+ .+.+.+|+.+
T Consensus 371 ~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~v---qlsE~~rel~Elks~lrv~qkE-----KEql~~EkQe 442 (546)
T PF07888_consen 371 DEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRV---QLSENRRELQELKSSLRVAQKE-----KEQLQEEKQE 442 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 3455555544 555555555556666777777766643 4555667777777766655544 2445566655
Q ss_pred HHHhhhhhHHhhhhhHhhhhcccchhhHHHHHHHHHHHHHHhhcc
Q 005989 375 LHISESWLDERMQMKIAETQNSLSDKNTILDKLRLDIENFLQAKH 419 (666)
Q Consensus 375 Lq~AEvWrEERvQMKL~eAk~~leeK~s~~dkL~~elE~FL~sk~ 419 (666)
| ...|.+|...|+.--.++-
T Consensus 443 L-------------------------~~yi~~Le~r~~~~~~~~~ 462 (546)
T PF07888_consen 443 L-------------------------LEYIERLEQRLDKVADEKW 462 (546)
T ss_pred H-------------------------HHHHHHHHHHHHHhhhhhh
Confidence 4 2456677777777655553
No 10
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.63 E-value=4.5 Score=50.73 Aligned_cols=103 Identities=19% Similarity=0.205 Sum_probs=56.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhHHHHHhhhhhHHhhh
Q 005989 308 ARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQ 387 (666)
Q Consensus 308 ~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~mLq~AEvWrEERvQ 387 (666)
-.+|.+.+..+...++....=...-+-+...+.++...|.+.+.+++.|..+-.+. ..++.=+.-...=.++..|
T Consensus 866 i~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 940 (1311)
T TIGR00606 866 TNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKD-----QQEKEELISSKETSNKKAQ 940 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 44566666667666655554444444555556666666666666666665543333 2222222222222345555
Q ss_pred hhHhhhhcccchhhHHHHHHHHHHHHHHhhcc
Q 005989 388 MKIAETQNSLSDKNTILDKLRLDIENFLQAKH 419 (666)
Q Consensus 388 MKL~eAk~~leeK~s~~dkL~~elE~FL~sk~ 419 (666)
+++.. |......+..|..+|+.|+....
T Consensus 941 ~~~~~----~~~~~~~~~~~~~~i~~y~~~~~ 968 (1311)
T TIGR00606 941 DKVND----IKEKVKNIHGYMKDIENKIQDGK 968 (1311)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHcCC
Confidence 55543 34446777777888888877653
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.50 E-value=6.5 Score=47.22 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=10.2
Q ss_pred ccccccCCCCCcccchHHHHHHHH
Q 005989 190 DSRGKLGKPRYNLKTSTELLTVLN 213 (666)
Q Consensus 190 ~~k~r~~e~~~~L~tS~EllkVLn 213 (666)
.|..++.++...|.-..+.+.-|.
T Consensus 167 ~~~~~~~~~~~~l~~~~~~l~el~ 190 (1164)
T TIGR02169 167 EFDRKKEKALEELEEVEENIERLD 190 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333
No 12
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.47 E-value=4.6 Score=42.08 Aligned_cols=69 Identities=29% Similarity=0.362 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005989 226 IALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKC 299 (666)
Q Consensus 226 ~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr 299 (666)
..-+..|+.|++..+.+..+..+.+.....++..|-+.+.++-+ .+..+...|+.+++||+.=++.-..
T Consensus 74 ~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~-----~r~~le~~i~~L~eEl~fl~~~hee 142 (312)
T PF00038_consen 74 ELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETL-----ARVDLENQIQSLKEELEFLKQNHEE 142 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh-----hHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 34467788888888888888888888888888888888887777 4455666788888888887665443
No 13
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.41 E-value=4.7 Score=46.72 Aligned_cols=173 Identities=18% Similarity=0.274 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH------HHH---HHHHHHHHHHHHHHHHHhhhhHHH
Q 005989 233 KMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKER------NRI---KAAVQSWKDELEDERKLRKCSESL 303 (666)
Q Consensus 233 ~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~------eki---~aai~slk~ELe~ERk~Rrr~E~l 303 (666)
.+||-.||.-|.+-.+++-....+|..|--++.+=+.-|-.+++ +++ ...+-.+.+|+.-=++..+.+|.-
T Consensus 91 e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e 170 (546)
T KOG0977|consen 91 EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDE 170 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555554444444444444422 233 356778888888888999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----chHHHHHHHhcCcchhhhhhhhhhhHHHHHhh
Q 005989 304 HRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIR----DYEEEVRLLRHKPEMDHAHMKNADRLILHISE 379 (666)
Q Consensus 304 n~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~----e~kaEve~lk~es~k~~~ee~eeER~mLq~AE 379 (666)
...|.+|.+-+...+..+.+.|+.|.-.|.-+++=|..|-.+|. .++.||+++.+....+. ... .-+
T Consensus 171 ~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~---t~~------~r~ 241 (546)
T KOG0977|consen 171 LKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDT---TAD------NRE 241 (546)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc---ccc------chH
Confidence 99999999999999999999999999999988888887766654 45566666555433221 011 111
Q ss_pred hhhHHhhhhhHhhhhcccchhhHHHHHHHHHHHHHHhhc
Q 005989 380 SWLDERMQMKIAETQNSLSDKNTILDKLRLDIENFLQAK 418 (666)
Q Consensus 380 vWrEERvQMKL~eAk~~leeK~s~~dkL~~elE~FL~sk 418 (666)
..+. ..|+-+.|.+.+++ .++..-+.|||.+.+.|
T Consensus 242 ~F~~-eL~~Ai~eiRaqye---~~~~~nR~diE~~Y~~k 276 (546)
T KOG0977|consen 242 YFKN-ELALAIREIRAQYE---AISRQNRKDIESWYKRK 276 (546)
T ss_pred HHHH-HHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHH
Confidence 2211 24444555555544 56677788888888775
No 14
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.35 E-value=6.7 Score=47.09 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 005989 232 LKMELDHSQTKIKELLQEKQTERQEVN 258 (666)
Q Consensus 232 L~~EL~~Ar~~I~eL~~E~~s~~~ei~ 258 (666)
|+.++...+.++..+..+....+.+++
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~~~~l~ 318 (1164)
T TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELE 318 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333333
No 15
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.24 E-value=4.6 Score=50.16 Aligned_cols=120 Identities=21% Similarity=0.264 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhH
Q 005989 240 QTKIKELLQEKQTERQEVNDLMKQVAEEKI--IRKDKER-NRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKS 316 (666)
Q Consensus 240 r~~I~eL~~E~~s~~~ei~~l~kqlaEeK~--~wK~KE~-eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~ 316 (666)
++.|-+...+....+.++...-.++.-++- +.|...+ ..|+.....++...+..++-++.+|.-+.++-..|.-+.+
T Consensus 333 ~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~ 412 (1293)
T KOG0996|consen 333 RAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTS 412 (1293)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555542221 2233333 3477778888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcC
Q 005989 317 SFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHK 359 (666)
Q Consensus 317 s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~e 359 (666)
-++++.+++|+.++.+.-+|..-...-..|.+...|+..|...
T Consensus 413 k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~ 455 (1293)
T KOG0996|consen 413 KIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEEL 455 (1293)
T ss_pred HHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHH
Confidence 9999999999999999888888777777777766666655443
No 16
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.95 E-value=9.7 Score=46.96 Aligned_cols=138 Identities=17% Similarity=0.243 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005989 227 ALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRK 306 (666)
Q Consensus 227 slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 306 (666)
.-+..|..++..++.+|++...-.+....+|.-+=+.+.+-+..+.++-.| ...-|+-.+..++..++-=++.|..-.+
T Consensus 741 ~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkd-l~keik~~k~~~e~~~~~~ek~~~e~e~ 819 (1174)
T KOG0933|consen 741 DDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKD-LEKEIKTAKQRAEESSKELEKRENEYER 819 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555444444544444444444443333222 2233455555555555555555555555
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhH
Q 005989 307 LARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRL 373 (666)
Q Consensus 307 L~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~ 373 (666)
|.-|..+++.++...-+.|+ -++.-|+.|..+|++.++.|.....+..+. ..++.....
T Consensus 820 l~lE~e~l~~e~~~~k~~l~-------~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~-~~el~~~k~ 878 (1174)
T KOG0933|consen 820 LQLEHEELEKEISSLKQQLE-------QLEKQISSLKSELGNLEAKVDKVEKDVKKA-QAELKDQKA 878 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHhHHHHH-HHHHHHHHH
Confidence 55555555544444433333 244445555555555555555544444444 244444433
No 17
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.91 E-value=5.9 Score=44.28 Aligned_cols=141 Identities=12% Similarity=0.216 Sum_probs=61.7
Q ss_pred chHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 204 TSTELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAV 283 (666)
Q Consensus 204 tS~EllkVLnrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai 283 (666)
+..+-.++|..|.++.-- ..+. ..++..+..++..|+.|..+......+++.+-+.+.+-+..- ...+
T Consensus 148 ~~~er~~il~~l~~~~~~--~~~~--~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~--------~~~i 215 (562)
T PHA02562 148 SAPARRKLVEDLLDISVL--SEMD--KLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKN--------GENI 215 (562)
T ss_pred ChHhHHHHHHHHhCCHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------HHHH
Confidence 445667788888875522 1111 223444444444444444444444444443322222221111 1223
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH--------------HHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhh
Q 005989 284 QSWKDELEDERKLRKCSESLHRKLARD--------------LSDMKSSFSNILKELERERKARILLEN--LCDEFAKGIR 347 (666)
Q Consensus 284 ~slk~ELe~ERk~Rrr~E~ln~KL~~E--------------Lae~K~s~~~~~kelE~ErkaRellE~--vCdElAk~I~ 347 (666)
+.++.+++.-......++.--.+|-.+ |.+++.....+-.+++.-.+....++. .|.---+.+.
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~ 295 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQIS 295 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCC
Confidence 334434333333333333333333333 444455555555555555555555544 5544444444
Q ss_pred chHHHHHHH
Q 005989 348 DYEEEVRLL 356 (666)
Q Consensus 348 e~kaEve~l 356 (666)
+...++..|
T Consensus 296 ~~~~~~~~l 304 (562)
T PHA02562 296 EGPDRITKI 304 (562)
T ss_pred CcHHHHHHH
Confidence 443333333
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.86 E-value=15 Score=45.82 Aligned_cols=59 Identities=24% Similarity=0.269 Sum_probs=33.5
Q ss_pred HHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005989 207 ELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVA 265 (666)
Q Consensus 207 EllkVLnrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqla 265 (666)
+|...-.+|=.+..+-.....-+..++.++..+...+.++....+..+.+++.+-.+++
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA 726 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433344444444444555566666666666666666666666666555555555544
No 19
>PRK02224 chromosome segregation protein; Provisional
Probab=92.78 E-value=12 Score=44.54 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHh
Q 005989 331 ARILLENLCDEFAKGIRDYEEEVRLLR 357 (666)
Q Consensus 331 aRellE~vCdElAk~I~e~kaEve~lk 357 (666)
.+.-++...+++...+.+-+..+..|.
T Consensus 614 ~~~~l~~~~~~~~~~l~~~r~~i~~l~ 640 (880)
T PRK02224 614 KREALAELNDERRERLAEKRERKRELE 640 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555543
No 20
>PRK03918 chromosome segregation protein; Provisional
Probab=92.11 E-value=27 Score=41.39 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=15.6
Q ss_pred ccchHHHHHHHHHhcccccc
Q 005989 202 LKTSTELLTVLNRIWSLEEQ 221 (666)
Q Consensus 202 L~tS~EllkVLnrIw~leeq 221 (666)
+++..+..++|.+|-+++.-
T Consensus 141 ~~~~~~r~~~~~~~~~~~~~ 160 (880)
T PRK03918 141 LESDESREKVVRQILGLDDY 160 (880)
T ss_pred hcCcHHHHHHHHHHhCCHHH
Confidence 45678899999999886554
No 21
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.10 E-value=5.2 Score=38.00 Aligned_cols=59 Identities=19% Similarity=0.314 Sum_probs=38.8
Q ss_pred cchHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005989 203 KTSTELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLM 261 (666)
Q Consensus 203 ~tS~EllkVLnrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~ 261 (666)
.+......|+|-||+|--++..++..-..|...+...+..+..|.......+.+++.+-
T Consensus 28 ~~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~e 86 (151)
T PF11559_consen 28 ESEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELE 86 (151)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999888877777776666666666666666655555554444444333
No 22
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=91.60 E-value=18 Score=37.19 Aligned_cols=70 Identities=23% Similarity=0.470 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005989 273 DKERNRIKAAVQSWKDELEDERKLRKC-SESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAK 344 (666)
Q Consensus 273 ~KE~eki~aai~slk~ELe~ERk~Rrr-~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk 344 (666)
+.--+.+..-|..|...+..|+.-|.. .|.++..|+++|.+...+|..-.. .++.+...|+..|++.+.+
T Consensus 91 ~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~--~R~erE~~i~krl~e~~~~ 161 (247)
T PF06705_consen 91 QSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERN--EREEREENILKRLEEEENR 161 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 334455556677888888999887776 888999999999887766654422 2233344566666665544
No 23
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=91.34 E-value=6.6 Score=36.95 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhccccccc------cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 205 STELLTVLNRIWSLEEQH------VSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNR 278 (666)
Q Consensus 205 S~EllkVLnrIw~leeq~------~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~ek 278 (666)
.+-|+|.+..+-++.+.. ...-.+.-.+..+|+.+...+..+..=..+++.++++.-..-.+= ..+.+.
T Consensus 18 l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i-----~~~i~~ 92 (139)
T PF05615_consen 18 LKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEI-----EQEIEQ 92 (139)
T ss_pred HHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 355666666666555432 234466777888888888888777666666655554432211000 012233
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 005989 279 IKAAVQSWKDELEDERKLRKC 299 (666)
Q Consensus 279 i~aai~slk~ELe~ERk~Rrr 299 (666)
++.-|..++.+|+..|..|++
T Consensus 93 ~k~~ie~lk~~L~~ak~~r~~ 113 (139)
T PF05615_consen 93 AKKEIEELKEELEEAKRVRQN 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555544
No 24
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.07 E-value=34 Score=42.74 Aligned_cols=14 Identities=0% Similarity=0.005 Sum_probs=8.7
Q ss_pred CCccccccccCCCC
Q 005989 186 TSSLDSRGKLGKPR 199 (666)
Q Consensus 186 ~~s~~~k~r~~e~~ 199 (666)
++...++.|..++-
T Consensus 165 aGv~~y~~r~~ea~ 178 (1163)
T COG1196 165 AGVSKYKERKEEAE 178 (1163)
T ss_pred hchHHHHHHHHHHH
Confidence 55666777766553
No 25
>PRK02224 chromosome segregation protein; Provisional
Probab=91.02 E-value=38 Score=40.45 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 303 LHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEF 342 (666)
Q Consensus 303 ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdEl 342 (666)
-+..|-.++++....+..+-..++..+..-.-+++-++++
T Consensus 357 ~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el 396 (880)
T PRK02224 357 RAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444445555555555555555555555
No 26
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.00 E-value=28 Score=46.03 Aligned_cols=111 Identities=20% Similarity=0.344 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005989 228 LVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEK--IIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHR 305 (666)
Q Consensus 228 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK--~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~ 305 (666)
.++.|+..++.-..++.+|..-.....+++..|-+++.|.. .+--+|....+..-|+.++.+|+.|-|.+--+....+
T Consensus 1246 ~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~ 1325 (1930)
T KOG0161|consen 1246 QLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALR 1325 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666667778889999999986543 4455667777788899999999999999988888888
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005989 306 KLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKG 345 (666)
Q Consensus 306 KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~ 345 (666)
+|-.|+... ...||.|-.++..|+.---+...+
T Consensus 1326 ~l~~e~~~l-------~e~leee~e~~~~l~r~lsk~~~e 1358 (1930)
T KOG0161|consen 1326 QLEHELDLL-------REQLEEEQEAKNELERKLSKANAE 1358 (1930)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888775443 344555555544444333333333
No 27
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.90 E-value=17 Score=41.68 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005989 275 ERNRIKAAVQSWKDELEDERK 295 (666)
Q Consensus 275 E~eki~aai~slk~ELe~ERk 295 (666)
|-..++..+.+|+.||+.++.
T Consensus 303 E~~~L~~~vesL~~ELe~~K~ 323 (522)
T PF05701_consen 303 EASSLRASVESLRSELEKEKE 323 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555555543
No 28
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.41 E-value=46 Score=41.89 Aligned_cols=64 Identities=23% Similarity=0.314 Sum_probs=48.5
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 218 LEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKA 281 (666)
Q Consensus 218 leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~a 281 (666)
++++-...-..|..++.++.+++..++......+..+.+.+.+-.++.+++...+.+-...+.+
T Consensus 626 ~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 689 (1201)
T PF12128_consen 626 LEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNE 689 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343334446788999999999999999988888888888888888888887777666655553
No 29
>PRK09039 hypothetical protein; Validated
Probab=90.16 E-value=12 Score=40.89 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLA 308 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~ 308 (666)
|+.+..||+...++|.+|-.--..++. ....+...|..|+.+|+.=+..|.+++.....+.
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~-------------------~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~ 108 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQ-------------------GNQDLQDSVANLRASLSAAEAERSRLQALLAELA 108 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 788899999999999885433332222 2233344445555555544445555555444333
Q ss_pred H
Q 005989 309 R 309 (666)
Q Consensus 309 ~ 309 (666)
.
T Consensus 109 ~ 109 (343)
T PRK09039 109 G 109 (343)
T ss_pred h
Confidence 3
No 30
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.05 E-value=41 Score=38.64 Aligned_cols=92 Identities=20% Similarity=0.297 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhHHH-----HHhhhhhHH--hhhhhHh---
Q 005989 322 LKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLIL-----HISESWLDE--RMQMKIA--- 391 (666)
Q Consensus 322 ~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~mL-----q~AEvWrEE--RvQMKL~--- 391 (666)
++..+.=-.+-+....--++|..+|...+..++..+-.+ .+.++++..+ +....|..+ ..+.+|.
T Consensus 157 ~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~-----~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~ 231 (522)
T PF05701_consen 157 LKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAH-----IEAEEERIEIAAEREQDAEEWEKELEEAEEELEELK 231 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444555566666666666665543322 2223333222 344556543 2222322
Q ss_pred -------hhhcccchhhHHHHHHHHHHHHHHhhc
Q 005989 392 -------ETQNSLSDKNTILDKLRLDIENFLQAK 418 (666)
Q Consensus 392 -------eAk~~leeK~s~~dkL~~elE~FL~sk 418 (666)
+.+..|...+..+..|+.+|+.+...+
T Consensus 232 ~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~ 265 (522)
T PF05701_consen 232 EELEAAKDLESKLAEASAELESLQAELEAAKESK 265 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222345555677888888888887743
No 31
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=89.85 E-value=25 Score=42.64 Aligned_cols=73 Identities=26% Similarity=0.398 Sum_probs=49.9
Q ss_pred HHHhhhhchHHHHHHHhcCcchhhhhhhhhhhHHHHHhhhhhHHhhhhh--HhhhhcccchhhHHHHHHHHHHHHHHhh
Q 005989 341 EFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQMK--IAETQNSLSDKNTILDKLRLDIENFLQA 417 (666)
Q Consensus 341 ElAk~I~e~kaEve~lk~es~k~~~ee~eeER~mLq~AEvWrEERvQMK--L~eAk~~leeK~s~~dkL~~elE~FL~s 417 (666)
.|=+.|.+.+.||..|+...... +.+.++.|=+ .++-+-....|| +..++..|..|.+.+..|..+|++-...
T Consensus 242 ~lEr~l~~le~Ei~~L~~~~~~~---~~~r~~~~k~-le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~ 316 (775)
T PF10174_consen 242 SLERMLRDLEDEIYRLRSRGELS---EADRDRLDKQ-LEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQ 316 (775)
T ss_pred HHHHHHHHHHHHHHHHHhccccc---ccchHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445566678888887764322 2233333323 366777788898 8899999999999999999999865443
No 32
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.89 E-value=39 Score=42.49 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 230 KALKMELDHSQTKIKELLQEKQTERQEVNDLMK---QVAEEKIIRKDKERNRIKAAVQSWKDELEDE 293 (666)
Q Consensus 230 ~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~k---qlaEeK~~wK~KE~eki~aai~slk~ELe~E 293 (666)
++...++..++..|.++..+.+..+.++..|.. ++..+...++...+.++...+..+..+|..-
T Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 697 (1201)
T PF12128_consen 631 KQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQL 697 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444432 2333344455555566666666666655543
No 33
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.62 E-value=35 Score=42.40 Aligned_cols=181 Identities=20% Similarity=0.239 Sum_probs=108.2
Q ss_pred HHHHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Q 005989 211 VLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKA------AVQ 284 (666)
Q Consensus 211 VLnrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~a------ai~ 284 (666)
+.+.+--|+++-.++.=-=.-+..+|+.++..+..|..+.. +|++.++.+-+||..-+..+.+-++. -|.
T Consensus 235 ~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~----ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~k 310 (1200)
T KOG0964|consen 235 INGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIK----ELENKLTNLREEKEQLKARETKISKKKTKLELKIK 310 (1200)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 33333334444333222223455667888888888877665 57777777777877766665554444 478
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHH-HHHHhhhhc--------
Q 005989 285 SWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELE-------RERKARILLENLC-DEFAKGIRD-------- 348 (666)
Q Consensus 285 slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE-------~ErkaRellE~vC-dElAk~I~e-------- 348 (666)
+++++++.++.-|......+.++..++.+-+--+++....|. ..++.=..+++-- |=+|+. |.
T Consensus 311 dlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kq-gr~sqFssk~ 389 (1200)
T KOG0964|consen 311 DLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQ-GRYSQFSSKE 389 (1200)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh-ccccccCcHH
Confidence 999999999999999999999998877776666665554442 2222222233211 122221 11
Q ss_pred -----hHHHHHHHhcCcchhhhhhhhhhhHHHHHhhhhhHHhhhhhHhhhhcccchhhHHHHHHHHHHH
Q 005989 349 -----YEEEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQMKIAETQNSLSDKNTILDKLRLDIE 412 (666)
Q Consensus 349 -----~kaEve~lk~es~k~~~ee~eeER~mLq~AEvWrEERvQMKL~eAk~~leeK~s~~dkL~~elE 412 (666)
.+.|++.|++--. -. -=++.-.||-+.+++..+++|...+..|...|.
T Consensus 390 eRDkwir~ei~~l~~~i~--------------~~--ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~ 442 (1200)
T KOG0964|consen 390 ERDKWIRSEIEKLKRGIN--------------DT--KEQENILQKEIEDLESELKEKLEEIKELESSIN 442 (1200)
T ss_pred HHHHHHHHHHHHHHHHHh--------------hh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 1123333332110 00 113566788899999998888888777766554
No 34
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=88.07 E-value=18 Score=43.73 Aligned_cols=94 Identities=22% Similarity=0.214 Sum_probs=57.5
Q ss_pred cccchHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 201 NLKTSTELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIK 280 (666)
Q Consensus 201 ~L~tS~EllkVLnrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~ 280 (666)
-++.|.+..+||.++ .+...--++-+..+-.+||.+-..|+--.--+.....+.+.+++...+=-..--+|++.-|.
T Consensus 845 l~kns~k~~ei~s~l---ke~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~ 921 (1259)
T KOG0163|consen 845 LLKNSLKTIEILSRL---KEGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIE 921 (1259)
T ss_pred HHHhhHHHHHHHHHH---hcchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 355667777777665 44555556777778888888888887433334445555666666554333333345555444
Q ss_pred H--HHHHHHHHHHHHHHHh
Q 005989 281 A--AVQSWKDELEDERKLR 297 (666)
Q Consensus 281 a--ai~slk~ELe~ERk~R 297 (666)
. .++.+++.+|.||+-|
T Consensus 922 e~er~rk~qE~~E~ER~rr 940 (1259)
T KOG0163|consen 922 ELERLRKIQELAEAERKRR 940 (1259)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3 3567778888888754
No 35
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.48 E-value=29 Score=33.58 Aligned_cols=93 Identities=26% Similarity=0.487 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005989 229 VKALKMELDHSQTK-------IKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSE 301 (666)
Q Consensus 229 v~aL~~EL~~Ar~~-------I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E 301 (666)
+.+|+.|.+.|..+ |++|.++.-.-.++|..|-+++.-=- .+-+++...|..++..|+.--+....+|
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE-----~eld~~~~~l~~~k~~lee~~~~~~~~E 76 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLE-----EELDKLEEQLKEAKEKLEESEKRKSNAE 76 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 45677777666555 45555555555667777766653211 2558899999999999999989889999
Q ss_pred HHHHHHH---HHHHHhhHHHHHHHHHHH
Q 005989 302 SLHRKLA---RDLSDMKSSFSNILKELE 326 (666)
Q Consensus 302 ~ln~KL~---~ELae~K~s~~~~~kelE 326 (666)
.||+|+. .||..+...+.-+...|.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999965 566666555555554444
No 36
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.24 E-value=91 Score=39.12 Aligned_cols=230 Identities=18% Similarity=0.230 Sum_probs=127.1
Q ss_pred ccCCCCCCCCccccccccCCCCCccc-----chHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005989 178 AYNPAVTPTSSLDSRGKLGKPRYNLK-----TSTELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQT 252 (666)
Q Consensus 178 ~~~p~~tp~~s~~~k~r~~e~~~~L~-----tS~EllkVLnrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s 252 (666)
.|+|. .-++|+-..|=..+++.-|+ ++..+|-.|--+.... .-+.+.+.||++.-.+|+.|+.-.+.
T Consensus 638 af~~~-i~~rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~-------~~~~~~q~el~~le~eL~~le~~~~k 709 (1174)
T KOG0933|consen 638 AFDPK-IRTRSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQ-------KELRAIQKELEALERELKSLEAQSQK 709 (1174)
T ss_pred hcccc-cccceeeecCceeCCCCcccCCCCCCcccHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56653 33444444444444433222 2233554444444222 34566777777777777777665554
Q ss_pred h---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhHHHHHH----------------
Q 005989 253 E---RQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDEL-------EDERKLRKCSESLHRK---------------- 306 (666)
Q Consensus 253 ~---~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~EL-------e~ERk~Rrr~E~ln~K---------------- 306 (666)
. +.+++-.+..++=-+--...-+.-++-+.+..+.+++ ...+++=+..+.--..
T Consensus 710 f~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rl 789 (1174)
T KOG0933|consen 710 FRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRL 789 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHH
Confidence 3 2455555555544333333444555555555554444 3444443333333322
Q ss_pred --HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhH--HHHHhhhhh
Q 005989 307 --LARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRL--ILHISESWL 382 (666)
Q Consensus 307 --L~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~--mLq~AEvWr 382 (666)
|.+||..+|.-+...-+++|+-....+.|.--|++|-++|..++..++.+....... +.|-- ..-+..+-.
T Consensus 790 kdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l-----~~e~~~l~~kv~~~~~ 864 (1174)
T KOG0933|consen 790 KDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSL-----KSELGNLEAKVDKVEK 864 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhHHh
Confidence 345555555556666666777777778888889999999888888888776543322 22211 112222211
Q ss_pred H-HhhhhhHhhhhcccchhhHHHHHHHHHHHHHHhhccc
Q 005989 383 D-ERMQMKIAETQNSLSDKNTILDKLRLDIENFLQAKHF 420 (666)
Q Consensus 383 E-ERvQMKL~eAk~~leeK~s~~dkL~~elE~FL~sk~~ 420 (666)
+ .-+|-.|.+-+.-+-+=+..++.+..+.|.|+..+..
T Consensus 865 ~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~ 903 (1174)
T KOG0933|consen 865 DVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSD 903 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhc
Confidence 1 2345556665555556667788888899999988764
No 37
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=87.06 E-value=8.5 Score=45.16 Aligned_cols=123 Identities=21% Similarity=0.220 Sum_probs=72.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005989 222 HVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSE 301 (666)
Q Consensus 222 ~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E 301 (666)
-.+-.+.|..+-.||+.|+.+|-.|++|. ++|.-|++...-.-+...-+-|.+... -|.. .+
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~-------e~L~~ql~~~N~~~~~~~~~~i~~~~~----~L~~-------kd 291 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLEREV-------EQLREQLAKANSSKKLAKIDDIDALGS----VLNQ-------KD 291 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhhhhccCCchHHHHH----HHhH-------HH
Confidence 34556788889999999999999998775 455556655544333332222333322 2332 77
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhchHHHHHHHhcC--cchhhhhhhhhhhHHHH
Q 005989 302 SLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAK---GIRDYEEEVRLLRHK--PEMDHAHMKNADRLILH 376 (666)
Q Consensus 302 ~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk---~I~e~kaEve~lk~e--s~k~~~ee~eeER~mLq 376 (666)
++|.+|..++-..++|+... +|..|.+++. +...+..++++|+.+ +..++ +++..|-.+|+
T Consensus 292 ~~i~~L~~di~~~~~S~~~e-------------~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDY-eeIK~ELsiLk 357 (629)
T KOG0963|consen 292 SEIAQLSNDIERLEASLVEE-------------REKHKAQISALEKELKAKISELEELKEKLNSRSDY-EEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH-HHHHHHHHHHH
Confidence 88888888777776665443 3444444332 333344455555544 23443 66777777765
No 38
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.97 E-value=34 Score=41.26 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhHHHHHhhhhhHHhhhhhHhhhhcccchhhHH
Q 005989 324 ELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQMKIAETQNSLSDKNTI 403 (666)
Q Consensus 324 elE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~mLq~AEvWrEERvQMKL~eAk~~leeK~s~ 403 (666)
++.-|.+-|.|.+ -|.+-..++.+..-|-.-|--+++...+.|++++ --+|-+.|+| +|.--|..||||..-
T Consensus 1089 ~qKhenqmrdl~~-qce~ni~EL~qlQNEKchlLvEhEtqklKelde~--h~~~~~~w~e-----~l~~rk~~lee~~~~ 1160 (1187)
T KOG0579|consen 1089 DQKHENQMRDLKE-QCEENIIELDQLQNEKCHLLVEHETQKLKELDEK--HHEMRELWQE-----NLIARKTVLEEKFED 1160 (1187)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-----hhhhhhhHHHHHHHH
Confidence 3444445454443 4777777777766665554444333223555554 3578899976 688888889999654
Q ss_pred HHHHHHHHHHHHhhc
Q 005989 404 LDKLRLDIENFLQAK 418 (666)
Q Consensus 404 ~dkL~~elE~FL~sk 418 (666)
. -.++|.|..-.
T Consensus 1161 ~---~reqE~f~~ms 1172 (1187)
T KOG0579|consen 1161 E---LREQEVFYGMS 1172 (1187)
T ss_pred H---HHHHHHHhccc
Confidence 3 35889997643
No 39
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=86.61 E-value=27 Score=43.57 Aligned_cols=152 Identities=16% Similarity=0.220 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005989 228 LVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKL 307 (666)
Q Consensus 228 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL 307 (666)
-+..+.--|---.++|.++..|......|++.+.+-| ..+..-.+...++|+.+-.+++.-=..=+.+++.++.++.-+
T Consensus 310 k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~-~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 310 KIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDL-DDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455566666666555555555554443 333334444555555554444444334444555555555444
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhh-hhhHHHHHhhhhhHHhh
Q 005989 308 ARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKN-ADRLILHISESWLDERM 386 (666)
Q Consensus 308 ~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~e-eER~mLq~AEvWrEERv 386 (666)
-+++-.- ..+.-.+++.=.+..+-+|.+-..|-.+..+.+.+..... +|.+ .++.++|+.-.-..--.
T Consensus 389 ~~~~~~~---~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~--------ee~~~i~~~i~~l~k~i~~~~~ 457 (1074)
T KOG0250|consen 389 NNELGSE---LEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEE--------EEKEHIEGEILQLRKKIENISE 457 (1074)
T ss_pred Hhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3222221 1122233333333344444444444443333333332221 2222 23556666655555555
Q ss_pred hhhHh
Q 005989 387 QMKIA 391 (666)
Q Consensus 387 QMKL~ 391 (666)
+++-.
T Consensus 458 ~l~~l 462 (1074)
T KOG0250|consen 458 ELKDL 462 (1074)
T ss_pred HHHHH
Confidence 55433
No 40
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=85.91 E-value=57 Score=41.43 Aligned_cols=39 Identities=31% Similarity=0.465 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 005989 274 KERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLS 312 (666)
Q Consensus 274 KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELa 312 (666)
+.+..+.++.++++.|.++++|+|.+.+.+++.|-.++.
T Consensus 543 ~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e 581 (1317)
T KOG0612|consen 543 SLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE 581 (1317)
T ss_pred HHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh
Confidence 445566778889999999999999999999999888877
No 41
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=85.55 E-value=39 Score=33.29 Aligned_cols=74 Identities=16% Similarity=0.340 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHH
Q 005989 283 VQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSN-------ILKELERERKARILLENLCDEFAKGIRDYEEEVRL 355 (666)
Q Consensus 283 i~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~-------~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~ 355 (666)
+..++.+.+ ++++.++.++.+|..|+..+++.++- -+++.......+ +.++-.++..+|.+.+.+++.
T Consensus 75 ~~~lr~~~e---~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~k--i~e~~~ki~~ei~~lr~~iE~ 149 (177)
T PF07798_consen 75 FAELRSENE---KLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELK--IQELNNKIDTEIANLRTEIES 149 (177)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 334444443 57777888888888888877775542 233333333333 688888899999999999998
Q ss_pred HhcCcc
Q 005989 356 LRHKPE 361 (666)
Q Consensus 356 lk~es~ 361 (666)
+|-+..
T Consensus 150 ~K~~~l 155 (177)
T PF07798_consen 150 LKWDTL 155 (177)
T ss_pred HHHHHH
Confidence 876533
No 42
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=85.41 E-value=1e+02 Score=38.08 Aligned_cols=94 Identities=18% Similarity=0.172 Sum_probs=65.4
Q ss_pred cccchHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 201 NLKTSTELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIK 280 (666)
Q Consensus 201 ~L~tS~EllkVLnrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~ 280 (666)
+...+++|++|||..-.-.=.+...-+.|.-|..+|.+-+..|++-+++--.++..++.- ....++++...-+-..++
T Consensus 155 G~~~~t~l~~vl~~~~d~LyKP~GrnP~iNq~l~klkq~~~ei~e~eke~a~yh~lLe~r--~~~~~rl~~l~~elr~~~ 232 (984)
T COG4717 155 GSPASTKLLEVLNKEADSLYKPSGRNPQINQLLEKLKQERNEIDEAEKEYATYHKLLESR--RAEHARLAELRSELRADR 232 (984)
T ss_pred CCcchHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHH
Confidence 557789999999988654445666678899999999999999999888888888776653 334445555555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 005989 281 AAVQSWKDELEDERKL 296 (666)
Q Consensus 281 aai~slk~ELe~ERk~ 296 (666)
..|+.+.+.++.=+.+
T Consensus 233 ~~i~~~~~~v~l~~~l 248 (984)
T COG4717 233 DHIRALRDAVELWPRL 248 (984)
T ss_pred HHHHHHHHHHhhHHHH
Confidence 5555555555543333
No 43
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.37 E-value=46 Score=41.17 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHH
Q 005989 268 KIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNI 321 (666)
Q Consensus 268 K~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~ 321 (666)
-..||+| |-+.+-+|+.||-++|+.-+.+-..-.++..||+|+--++-=+
T Consensus 267 lqEfkSk----im~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEma 316 (1243)
T KOG0971|consen 267 LQEFKSK----IMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMA 316 (1243)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456664 5556778999999999999999999999999999987666544
No 44
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=84.38 E-value=36 Score=33.52 Aligned_cols=94 Identities=19% Similarity=0.337 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHH
Q 005989 227 ALVKALKMELDHSQ-TKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDEL-EDERKLRKCSESLH 304 (666)
Q Consensus 227 slv~aL~~EL~~Ar-~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~EL-e~ERk~Rrr~E~ln 304 (666)
+.++.|+.|+...+ .++..|..+...-+.+++.|-.+|.+|-.--+ .-++--+..-|.++ +..+....++..+|
T Consensus 58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~----a~~klD~n~eK~~~r~e~~~~~~ki~e~~ 133 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLR----AEVKLDLNLEKGRIREEQAKQELKIQELN 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44566666665544 55666666767777777777776665532111 11111122222222 12234556788899
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q 005989 305 RKLARDLSDMKSSFSNILKE 324 (666)
Q Consensus 305 ~KL~~ELae~K~s~~~~~ke 324 (666)
.|+..|++.+++.+..+--+
T Consensus 134 ~ki~~ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 134 NKIDTEIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999888776655433
No 45
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=84.19 E-value=5.8 Score=40.50 Aligned_cols=84 Identities=18% Similarity=0.296 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCc--chhhhhhhhhhhHHHHHh
Q 005989 301 ESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKP--EMDHAHMKNADRLILHIS 378 (666)
Q Consensus 301 E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es--~k~~~ee~eeER~mLq~A 378 (666)
-..+.|+..-|+.+...-.+.+.+||.||+...-.=.-.|+|.-.. +.|-+.|++.. ++.+... .|++.=.+.
T Consensus 94 k~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lL---EkEReRLkq~lE~Ek~~~~~--~EkE~~K~~ 168 (192)
T PF09727_consen 94 KKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLL---EKERERLKQQLEQEKAQQKK--LEKEHKKLV 168 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH---HHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3467888999999999999999999999998875544555554442 23333444332 1221122 233333555
Q ss_pred hhhhHHhhhhh
Q 005989 379 ESWLDERMQMK 389 (666)
Q Consensus 379 EvWrEERvQMK 389 (666)
..|.|||++-|
T Consensus 169 ~~l~eE~~k~K 179 (192)
T PF09727_consen 169 SQLEEERTKLK 179 (192)
T ss_pred HHHHHHHHHHH
Confidence 66677776544
No 46
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=84.13 E-value=68 Score=39.43 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHHHHHHHhhHHHHHHH
Q 005989 275 ERNRIKAAVQSWKDELEDERKLRK-----------CSESLHRKLARDLSDMKSSFSNIL 322 (666)
Q Consensus 275 E~eki~aai~slk~ELe~ERk~Rr-----------r~E~ln~KL~~ELae~K~s~~~~~ 322 (666)
|.--....|..+++||+.+++.|- =++..|.||.++.+++.-++..+.
T Consensus 285 ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEar 343 (1265)
T KOG0976|consen 285 ELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEAR 343 (1265)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344568889999999998764 467889999999988887765543
No 47
>PRK11637 AmiB activator; Provisional
Probab=83.96 E-value=68 Score=35.55 Aligned_cols=36 Identities=11% Similarity=0.278 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQV 264 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kql 264 (666)
+..|..+|..+...|.++.++......+|+.+-+++
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI 112 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASI 112 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443333
No 48
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.75 E-value=55 Score=38.51 Aligned_cols=217 Identities=17% Similarity=0.183 Sum_probs=121.8
Q ss_pred cCCCCCCCCCCCCCCCCCcccccccccchhhhhccccccCCCCCCCC-------------------CCCCcccccccccc
Q 005989 119 VRHPPTCSPHPHPRQPESASGSRRHLSASLMKHHESVERNGHALQPV-------------------SPASYDNSMEVAAY 179 (666)
Q Consensus 119 l~dp~~~~~~~~~dqp~s~~~~rr~~~~s~~q~~~~~~~~~~~lqp~-------------------spaS~~ssme~~~~ 179 (666)
|..|++-.-+ .-++..+.+-+-|+.+.++..-.++..|-+.++-+ .--||+++|..+.-
T Consensus 137 L~YPf~~siS--s~~a~gspH~WP~iL~mlhWlvdlI~~~t~~v~~~~l~q~~~ed~~m~k~f~dy~~~~Y~~fl~g~d~ 214 (581)
T KOG0995|consen 137 LKYPFLLSIS--SLQAAGSPHNWPHILGMLHWLVDLIRINTALVEDSPLEQEEAEDKTMNKLFFDYTIRSYTSFLKGEDN 214 (581)
T ss_pred CCCCcccchh--hhccCCCCCccHHHHHHHHHHHHHHHHhHHHhhccchhccchHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 4455544223 23445555557777777766665555555544422 01245555544321
Q ss_pred CCCCCCCCccccccccCCCCCcc--------cchHHHHHHHHHhcccccccc---ccHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 180 NPAVTPTSSLDSRGKLGKPRYNL--------KTSTELLTVLNRIWSLEEQHV---SDIALVKALKMELDHSQTKIKELLQ 248 (666)
Q Consensus 180 ~p~~tp~~s~~~k~r~~e~~~~L--------~tS~EllkVLnrIw~leeq~~---s~~slv~aL~~EL~~Ar~~I~eL~~ 248 (666)
.++ .--++|+||.+-..++ +|..+|.-.|+ +.+.... +.==..++|+.-+..+++-+.++..
T Consensus 215 ---~~~-~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~---e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~ 287 (581)
T KOG0995|consen 215 ---SSE-LEDELKHRLEKYFTSIANEIEDLKKTNRELEEMIN---EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKS 287 (581)
T ss_pred ---cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 011 1146777766654433 34556665555 2232221 2122345578888888888888888
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHhhHHHHHHHHHH
Q 005989 249 EKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLH---RKLARDLSDMKSSFSNILKEL 325 (666)
Q Consensus 249 E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln---~KL~~ELae~K~s~~~~~kel 325 (666)
-.+..-+.|+.|-..+. -|--|.++|+..++.|+.-++--+=.=...|.+| -+|-++|.++++.+....|++
T Consensus 288 k~~~~~~~l~~l~~Eie-----~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 288 KKQHMEKKLEMLKSEIE-----EKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEV 362 (581)
T ss_pred hhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77765555555444442 2444788888888888888765444444445444 488899999988877777654
Q ss_pred HH-HHHHHHHHHHH------HHHHHhhhhch
Q 005989 326 ER-ERKARILLENL------CDEFAKGIRDY 349 (666)
Q Consensus 326 E~-ErkaRellE~v------CdElAk~I~e~ 349 (666)
=. +..++...+.+ |+.+++.|.-.
T Consensus 363 w~~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 363 WELKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22233333332 66666655443
No 49
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=82.54 E-value=33 Score=39.52 Aligned_cols=58 Identities=26% Similarity=0.354 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005989 230 KALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRK 306 (666)
Q Consensus 230 ~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 306 (666)
.-|+.-+|.||++-++...|+...+.+ |-+|+ ..-+++-..|-+||++|.-++.-++|
T Consensus 510 ~llkva~dnar~qekQiq~Ek~ELkmd-------~lrer------------elreslekql~~ErklR~~~qkr~kk 567 (641)
T KOG3915|consen 510 GLLKVAIDNARAQEKQIQLEKTELKMD-------FLRER------------ELRESLEKQLAMERKLRAIVQKRLKK 567 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677899999888887776643321 22222 23345666677888888776654443
No 50
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=81.91 E-value=1e+02 Score=35.21 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcC
Q 005989 326 ERERKARILLENLCDEFAKGIRDYEEEVRLLRHK 359 (666)
Q Consensus 326 E~ErkaRellE~vCdElAk~I~e~kaEve~lk~e 359 (666)
.+.-+.-.++-.|-.+++..|+.+++....|+..
T Consensus 143 ~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~ 176 (420)
T COG4942 143 QRSVRLAIYYGALNPARAERIDALKATLKQLAAV 176 (420)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3335555666667777777777777666666554
No 51
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.68 E-value=1.6e+02 Score=37.49 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005989 232 LKMELDHSQTKIKELLQEKQTERQEVNDLMKQV 264 (666)
Q Consensus 232 L~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kql 264 (666)
|..++...+..|+++..+......+++.+...+
T Consensus 893 l~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1311)
T TIGR00606 893 LSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK 925 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 52
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=81.48 E-value=56 Score=31.97 Aligned_cols=110 Identities=22% Similarity=0.295 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLA 308 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~ 308 (666)
++.-+.+-+.-..+|--|+++....+.+..++.... +--++.|..++++|+.=..-+++ |-
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~da------------En~k~eie~L~~el~~lt~el~~-------L~ 72 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKECLILDA------------ENSKAEIETLEEELEELTSELNQ-------LE 72 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 344444444445555555555555555555554444 22233444444444432222222 22
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHh
Q 005989 309 RDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLR 357 (666)
Q Consensus 309 ~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk 357 (666)
-||..+.+--....+.|++.+..=.-||..+..|...|.+-+++...|+
T Consensus 73 ~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~ 121 (140)
T PF10473_consen 73 LELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLK 121 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555555555556555555555543333
No 53
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=81.12 E-value=1.1e+02 Score=35.13 Aligned_cols=44 Identities=25% Similarity=0.402 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcc-cccccc---ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 206 TELLTVLNRIWS-LEEQHV---SDIALVKALKMELDHSQTKIKELLQE 249 (666)
Q Consensus 206 ~EllkVLnrIw~-leeq~~---s~~slv~aL~~EL~~Ar~~I~eL~~E 249 (666)
.+|..++|.|.. +.+... ..-++|...+.++++...+|.+|..+
T Consensus 226 ~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~ 273 (582)
T PF09731_consen 226 QELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEE 273 (582)
T ss_pred HHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899998874 333333 23466666666666666655555443
No 54
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.59 E-value=39 Score=41.16 Aligned_cols=109 Identities=19% Similarity=0.274 Sum_probs=69.8
Q ss_pred cccCCCCCcccchHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-----H
Q 005989 193 GKLGKPRYNLKTSTELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAE-----E 267 (666)
Q Consensus 193 ~r~~e~~~~L~tS~EllkVLnrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaE-----e 267 (666)
||+.|+...++|-++.+.+++... -..||-|+-|+.+|..-+.-...|..|++-..+.+...--...+ .
T Consensus 458 ~kl~Dvr~~~tt~kt~ie~~~~q~------e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s 531 (1118)
T KOG1029|consen 458 GKLQDVRVDITTQKTEIEEVTKQR------ELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS 531 (1118)
T ss_pred hhhhhheeccchHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence 678888888888877776655443 34577788888888888888888888877655444332111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHH
Q 005989 268 KIIRKDKERNRIKAAVQSWKDELEDERKLRK-CSESLHRKL 307 (666)
Q Consensus 268 K~~wK~KE~eki~aai~slk~ELe~ERk~Rr-r~E~ln~KL 307 (666)
-+-....+++-|+.+|.+--+||+.|..... .++++|--|
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~ql 572 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQL 572 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 1223445667888888888888888866543 345555443
No 55
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.05 E-value=92 Score=39.61 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=39.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcc
Q 005989 307 LARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPE 361 (666)
Q Consensus 307 L~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~ 361 (666)
.--||...+.....+++.+|.=+.+=.-+..--+|-.-+|.+.+.++..+|.+..
T Consensus 505 aesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~ 559 (1293)
T KOG0996|consen 505 AESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELK 559 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3456666666677777777777777777777777777788888888888777643
No 56
>PHA02562 46 endonuclease subunit; Provisional
Probab=79.75 E-value=1.1e+02 Score=34.37 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDL 260 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l 260 (666)
+..|+.|++.....+..|..+....+.+|..|
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555444
No 57
>PRK04863 mukB cell division protein MukB; Provisional
Probab=79.49 E-value=1.9e+02 Score=37.92 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=5.7
Q ss_pred cchHHHHHHHHHh
Q 005989 203 KTSTELLTVLNRI 215 (666)
Q Consensus 203 ~tS~EllkVLnrI 215 (666)
.+..|....|-.+
T Consensus 276 r~~eERR~liEEA 288 (1486)
T PRK04863 276 RHANERRVHLEEA 288 (1486)
T ss_pred hCHHHHHHHHHHH
Confidence 3444444444444
No 58
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.55 E-value=6.7 Score=42.19 Aligned_cols=42 Identities=24% Similarity=0.209 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhh
Q 005989 323 KELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDH 364 (666)
Q Consensus 323 kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~ 364 (666)
++-+...+.=+-||+-|++|.++|.+.++|...|.++-...|
T Consensus 57 ~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~ 98 (314)
T PF04111_consen 57 QEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYW 98 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444455777788888888888888887775433333
No 59
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=78.52 E-value=96 Score=37.40 Aligned_cols=31 Identities=32% Similarity=0.543 Sum_probs=17.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 005989 293 ERKLRKCSESLHRKLARDLSDMKSSFSNILKELER 327 (666)
Q Consensus 293 ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ 327 (666)
||+.++.++.++.+| -.++.++.++.+-+++
T Consensus 634 Er~~~~EL~~~~~~l----~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 634 EREFKKELERMKDQL----QDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 777777777776664 2344555554444433
No 60
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=78.18 E-value=1.7e+02 Score=35.69 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHH-HhcCcchhhhhhhhhhhHHHHHhhhhh-HHhhhhhHhhhhcccchhhHHHH
Q 005989 328 ERKARILLENLCDEFAKGIRDYEEEVRL-LRHKPEMDHAHMKNADRLILHISESWL-DERMQMKIAETQNSLSDKNTILD 405 (666)
Q Consensus 328 ErkaRellE~vCdElAk~I~e~kaEve~-lk~es~k~~~ee~eeER~mLq~AEvWr-EERvQMKL~eAk~~leeK~s~~d 405 (666)
......+++..|.+|...+..++.+++. +.... .-+....+.+-.+++.+. -+.+++.+.+....+++-...++
T Consensus 352 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~ 427 (908)
T COG0419 352 KNELAKLLEERLKELEERLEELEKELEKALERLK----QLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELE 427 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666652 11110 012223333444444443 34566666666555555555555
Q ss_pred HHHHHHHHH
Q 005989 406 KLRLDIENF 414 (666)
Q Consensus 406 kL~~elE~F 414 (666)
++...+..+
T Consensus 428 ~~~~~~~~~ 436 (908)
T COG0419 428 ELEEEIKKL 436 (908)
T ss_pred HHHHHHHHH
Confidence 554444433
No 61
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=78.09 E-value=1.1e+02 Score=33.24 Aligned_cols=110 Identities=22% Similarity=0.318 Sum_probs=64.0
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005989 219 EEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRK 298 (666)
Q Consensus 219 eeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rr 298 (666)
.|-|.++--+-+-|.++|+++.++.+.|+.+-+..+.|++.+-.++..-.... -..+..|.++|..=+.
T Consensus 37 ~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~--------y~q~s~Leddlsqt~a--- 105 (333)
T KOG1853|consen 37 NEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQF--------YQQESQLEDDLSQTHA--- 105 (333)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH---
Confidence 34455666677889999999999999999999988888877766653322211 1122233333332222
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhh
Q 005989 299 CSESLHRKLARDLSDMKSSFSNILKELERERKARI-LLENLCDEFAKGIR 347 (666)
Q Consensus 299 r~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRe-llE~vCdElAk~I~ 347 (666)
.-|.+ +|..+||.. +-.+||+-+++.+ .+|++-..|-..|.
T Consensus 106 ikeql-~kyiReLEQ-------aNDdLErakRati~sleDfeqrLnqAIE 147 (333)
T KOG1853|consen 106 IKEQL-RKYIRELEQ-------ANDDLERAKRATIYSLEDFEQRLNQAIE 147 (333)
T ss_pred HHHHH-HHHHHHHHH-------hccHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 22222 344445433 3356666666665 45666666665554
No 62
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.78 E-value=33 Score=40.57 Aligned_cols=107 Identities=17% Similarity=0.144 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLA 308 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~ 308 (666)
+.+|+.||++--++|..|+++. |+|.|+|++=-++-+.-----...-+-.++.-++.|.-.-+.+-..
T Consensus 334 ~~~~~~~~~~~~Tr~Er~Er~~-------D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~----- 401 (852)
T KOG4787|consen 334 LELAESQVQHLNTKIERLEKTN-------DHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTI----- 401 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHH-----
Confidence 5677777777777777776653 8999999886665443222222233455677777776665544332
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q 005989 309 RDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVR 354 (666)
Q Consensus 309 ~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve 354 (666)
.++.+-+.++.-. +|.=+.-+..|.+|.-.-+..+-|+.
T Consensus 402 ~~~~~~~~~~s~~-------~r~L~~~~~~~~~~~~~~~s~~~Ei~ 440 (852)
T KOG4787|consen 402 SELERKNLELTTQ-------VKQLETKVTPKPNFVVPSGTTTTELR 440 (852)
T ss_pred HHHHHhcccHHHH-------HHHHhhccccchhhcCCCcchHHHHH
Confidence 2333333333333 34445668899999876665555543
No 63
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=77.70 E-value=1.4e+02 Score=36.53 Aligned_cols=63 Identities=17% Similarity=0.259 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcc
Q 005989 299 CSESLHRKLARDLSDMKSSF-------SNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPE 361 (666)
Q Consensus 299 r~E~ln~KL~~ELae~K~s~-------~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~ 361 (666)
.+|..+++|-.|+.-+++-+ ....++||-.+-....|-.=||.+..+++.-++|+.+|..+..
T Consensus 242 ~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~ 311 (775)
T PF10174_consen 242 SLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLE 311 (775)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665422 2234677888877778877799999999999988888876644
No 64
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=77.66 E-value=84 Score=31.76 Aligned_cols=91 Identities=19% Similarity=0.356 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 226 IALVKALKMELDHSQTKIKELLQEKQTE----------------RQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDE 289 (666)
Q Consensus 226 ~slv~aL~~EL~~Ar~~I~eL~~E~~s~----------------~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~E 289 (666)
..||..|+..+.+-+.++.+|++-..+. -.+|+.++.+|.||.. ++ +.+..+-.-+++.
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqq--R~---~~L~qvN~lLReQ 89 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQ--RS---EELAQVNALLREQ 89 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHH--hH---HHHHHHHHHHHHH
Confidence 3689999999999999999998866321 2578888888888876 44 3333444456666
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 005989 290 LEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERE 328 (666)
Q Consensus 290 Le~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~E 328 (666)
||..+ ..|..|..||.-+...+..+..+|+..
T Consensus 90 LEq~~-------~~N~~L~~dl~klt~~~~~l~~eL~~k 121 (182)
T PF15035_consen 90 LEQAR-------KANEALQEDLQKLTQDWERLRDELEQK 121 (182)
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76554 457788888877777777776666544
No 65
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=77.34 E-value=94 Score=32.17 Aligned_cols=48 Identities=25% Similarity=0.412 Sum_probs=29.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q 005989 307 LARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVR 354 (666)
Q Consensus 307 L~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve 354 (666)
+..+|..+..||+...+-||+=|..-+-+-.-=.-|-+-|.+|.+.|.
T Consensus 81 ~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~ 128 (207)
T PF05010_consen 81 AYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLK 128 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 778899999999999999987665432222222223344444444443
No 66
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=77.10 E-value=1.5e+02 Score=34.41 Aligned_cols=51 Identities=27% Similarity=0.314 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 005989 277 NRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELER 327 (666)
Q Consensus 277 eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ 327 (666)
+.|...|+.|-+-|+.|-..++.++....++..-|..++.....+..+++.
T Consensus 285 ~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~ 335 (569)
T PRK04778 285 EEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDR 335 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555444444444444444444444433
No 67
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=76.99 E-value=55 Score=36.74 Aligned_cols=160 Identities=23% Similarity=0.271 Sum_probs=84.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 225 DIALVKALKMELDHSQTKIKELLQEKQTE--------------RQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDEL 290 (666)
Q Consensus 225 ~~slv~aL~~EL~~Ar~~I~eL~~E~~s~--------------~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~EL 290 (666)
..+++.|+.. +-|--|+.|+.+++.. .+|-+.|-.||.=|+. |..|..-+-+-|--.|
T Consensus 105 ~~s~LaAaE~---khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~-----e~kK~E~~k~Kl~~qL 176 (561)
T KOG1103|consen 105 AASLLAAAEK---KHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIE-----EKKKAEIAKDKLEMQL 176 (561)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 3455555543 3455677777777652 2233444444444443 2233333334455567
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhhhchHHHHHHH
Q 005989 291 EDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEF--------------AKGIRDYEEEVRLL 356 (666)
Q Consensus 291 e~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdEl--------------Ak~I~e~kaEve~l 356 (666)
+.||+- -|.+..-|.-|- |.++ +|--|.-.|+-+||=++-.+- -+|+ ..++.|+
T Consensus 177 eeEk~R---Heqis~mLilEc---Kka~---~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERergl-qteaqve-- 244 (561)
T KOG1103|consen 177 EEEKKR---HEQISLMLILEC---KKAL---LKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGL-QTEAQVE-- 244 (561)
T ss_pred HHHHHH---HHHHHHHHHHHH---HHHH---HHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhcc-chHHHHH--
Confidence 888754 344444455433 3333 333455566666665443332 1221 1233443
Q ss_pred hcCcchhhhhhhhhhhHHHHHhhhhhHHhhhhhHhhhhcccchhhHHHHHHHHHHHHHHhhc
Q 005989 357 RHKPEMDHAHMKNADRLILHISESWLDERMQMKIAETQNSLSDKNTILDKLRLDIENFLQAK 418 (666)
Q Consensus 357 k~es~k~~~ee~eeER~mLq~AEvWrEERvQMKL~eAk~~leeK~s~~dkL~~elE~FL~sk 418 (666)
|. ++|.+.||..|+ |+.=|+|.-|--|-+ -+.-|.+...++|+-+..-
T Consensus 245 -----k~-i~EfdiEre~LR-Ael~ree~r~K~lKe-------EmeSLkeiVkdlEA~hQh~ 292 (561)
T KOG1103|consen 245 -----KL-IEEFDIEREFLR-AELEREEKRQKMLKE-------EMESLKEIVKDLEADHQHL 292 (561)
T ss_pred -----HH-HHHHHHHHHHHH-HHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhhhhhc
Confidence 33 588889998886 677777777755532 2344555666777765543
No 68
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=76.84 E-value=78 Score=30.99 Aligned_cols=89 Identities=24% Similarity=0.373 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005989 228 LVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKL 307 (666)
Q Consensus 228 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL 307 (666)
-|-+|..||+.++..--.++.+--..+.+|..|--++ +.+..-+..+..||..=|.-+..+...=.+.
T Consensus 25 ~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el------------~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 25 HVESLERELEMSQENKECLILDAENSKAEIETLEEEL------------EELTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888888888888888876666 3444555556666655444444444444444
Q ss_pred ---HHHHHHhhHHHHHHHHHHHHH
Q 005989 308 ---ARDLSDMKSSFSNILKELERE 328 (666)
Q Consensus 308 ---~~ELae~K~s~~~~~kelE~E 328 (666)
+.||.-..+++.+.++++|.+
T Consensus 93 q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 93 QEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 567777777888888888777
No 69
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=76.28 E-value=94 Score=31.63 Aligned_cols=106 Identities=18% Similarity=0.266 Sum_probs=57.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005989 222 HVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSE 301 (666)
Q Consensus 222 ~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E 301 (666)
-..|+.+|+.|+.|+..-+.......+.-.....+...|..-| .++..-+..++.+|..
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL------------~~a~~e~~eL~k~L~~--------- 80 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPL------------KKAEEEVEELRKQLKN--------- 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------------HHHHHHHHHHHHHHHH---------
Confidence 3468899999999998887766665555444444444443333 1112222233333322
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchH
Q 005989 302 SLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYE 350 (666)
Q Consensus 302 ~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~k 350 (666)
+.|.-..|..+|+-+...-++|..-+-.-++|+.=|..+-.+-.+..
T Consensus 81 --y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 81 --YEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333344455555555555555566666666666666655544433
No 70
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.50 E-value=78 Score=36.35 Aligned_cols=98 Identities=23% Similarity=0.355 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh--------------
Q 005989 281 AAVQSWKDELEDER-KLRKCSESLHRKLARDLSDMKSSFSNILKELERERKA-RILLENLCDEFAK-------------- 344 (666)
Q Consensus 281 aai~slk~ELe~ER-k~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~Erka-RellE~vCdElAk-------------- 344 (666)
|-+.++.++|+.|+ |+=.++|.+--+|..|-.. +--...+|.-.++|+++ -+|||++-.+|-.
T Consensus 321 arlksl~dklaee~qr~sd~LE~lrlql~~eq~l-~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rg 399 (502)
T KOG0982|consen 321 ARLKSLADKLAEEDQRSSDLLEALRLQLICEQKL-RVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRG 399 (502)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 44556666777776 5566666666666544433 23334444446666665 4677776665522
Q ss_pred ----hhhchHHHHHHHhcCcchhhhhhhhhhhHH------HHHhhhh
Q 005989 345 ----GIRDYEEEVRLLRHKPEMDHAHMKNADRLI------LHISESW 381 (666)
Q Consensus 345 ----~I~e~kaEve~lk~es~k~~~ee~eeER~m------Lq~AEvW 381 (666)
..-+.+.||+.||+..-++ .+..+|+.| +|++--|
T Consensus 400 rsSaRe~eleqevkrLrq~nr~l--~eqneelngtilTls~q~lkn~ 444 (502)
T KOG0982|consen 400 RSSAREIELEQEVKRLRQPNRIL--SEQNEELNGTILTLSTQFLKNW 444 (502)
T ss_pred chhHHHHHHHHHHHHhccccchh--hhhhhhhhhhhhhHHHHHHHHH
Confidence 1235788999999998885 788888865 4555555
No 71
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=75.11 E-value=22 Score=40.97 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 005989 237 DHSQTKIKELLQEKQTERQ 255 (666)
Q Consensus 237 ~~Ar~~I~eL~~E~~s~~~ 255 (666)
..-+..|+||+.|++.++-
T Consensus 87 ~~l~~Kl~eLE~e~k~d~v 105 (508)
T PF00901_consen 87 QGLQRKLKELEDEQKEDEV 105 (508)
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 4678888888888776544
No 72
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=74.68 E-value=77 Score=29.88 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQV--AEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRK 306 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kql--aEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 306 (666)
+..|..|+..+...+..+.......+.+++...+.. |.++-..----|-..-..|..++.++..-+.....+..--..
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~ 84 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAES 84 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888777777777665544 223332222233333445666777766655444444333333
Q ss_pred HHHHHHHhhH
Q 005989 307 LARDLSDMKS 316 (666)
Q Consensus 307 L~~ELae~K~ 316 (666)
...+|...+.
T Consensus 85 a~~~l~~~e~ 94 (132)
T PF07926_consen 85 AKAELEESEA 94 (132)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 73
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=74.12 E-value=39 Score=29.25 Aligned_cols=61 Identities=25% Similarity=0.319 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 227 ALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELED 292 (666)
Q Consensus 227 slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ 292 (666)
+.|.+|+.-|+++-.+|.-...+...-..|=+.++.+|.+ ..-+-.++++-+..++.||+.
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~-----a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD-----AYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999988888888888888888866 334667777888888877653
No 74
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=73.17 E-value=1.2e+02 Score=31.29 Aligned_cols=139 Identities=17% Similarity=0.244 Sum_probs=70.7
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 218 LEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQV--AEEKIIRKDKERNRIKAAVQSWKDELEDERK 295 (666)
Q Consensus 218 leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kql--aEeK~~wK~KE~eki~aai~slk~ELe~ERk 295 (666)
|+.....+-.=|.-|...|..|.....+..+--.-....+..+-..| +++++ +.+..-|..|..+|..=..
T Consensus 83 lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~-------e~~E~ki~eLE~el~~~~~ 155 (237)
T PF00261_consen 83 LENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERA-------EAAESKIKELEEELKSVGN 155 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhchhHHHHHHHHHHHHH
Confidence 33344444444555555566555555555544444433344333333 33443 4444445555555544444
Q ss_pred HhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchh
Q 005989 296 LRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMD 363 (666)
Q Consensus 296 ~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~ 363 (666)
.=+.+|.--.+...-......-+...-..|..=-..-+..|.-|..|-+.|...+.++...|.+...+
T Consensus 156 ~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~ 223 (237)
T PF00261_consen 156 NLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKV 223 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433333333333333333333334456677778888888888888887777665554
No 75
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=72.65 E-value=99 Score=31.51 Aligned_cols=108 Identities=30% Similarity=0.403 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 227 ALVKALKMELDHSQTKIKELLQEKQTER-----------------QEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDE 289 (666)
Q Consensus 227 slv~aL~~EL~~Ar~~I~eL~~E~~s~~-----------------~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~E 289 (666)
-=|.-|+.+|..++..+.+|..|.+.-+ .++..+|.+..+|-..|+.+=+. +-..+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~-------~q~~~ 84 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRK-------SQEQE 84 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 3477888888888888888888766422 34555677777777666653322 11122
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHH
Q 005989 290 LEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRL 355 (666)
Q Consensus 290 Le~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~ 355 (666)
-+.||++|..-+.+. -++ ..++.|++=-..+.|.| +++|...+...+++++.
T Consensus 85 r~~~~klk~~~~el~--------k~~----~~l~~L~~L~~dknL~e--ReeL~~kL~~~~~~l~~ 136 (194)
T PF15619_consen 85 RELERKLKDKDEELL--------KTK----DELKHLKKLSEDKNLAE--REELQRKLSQLEQKLQE 136 (194)
T ss_pred HHHHHHHHHHHHHHH--------HHH----HHHHHHHHHHHcCCchh--HHHHHHHHHHHHHHHHH
Confidence 234444444333332 222 22233333344556666 67888877777766654
No 76
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=71.98 E-value=58 Score=39.97 Aligned_cols=112 Identities=22% Similarity=0.291 Sum_probs=82.7
Q ss_pred HHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 213 NRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDL--MKQVAEEKIIRKDKERNRIKAAVQSWKDEL 290 (666)
Q Consensus 213 nrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l--~kqlaEeK~~wK~KE~eki~aai~slk~EL 290 (666)
|+|++++-..-. --|.+.||+.|..+.+.|-.+.-...+.+.+| ++--++-+.-.---++.++-+.|+.+.+-|
T Consensus 400 n~if~~e~~~~d----he~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sl 475 (1265)
T KOG0976|consen 400 NHIFRLEQGKKD----HEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSL 475 (1265)
T ss_pred Hhhhhhhhccch----hHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhCh
Confidence 667766554322 24678999999999999999988888888776 455666666666677888999999999999
Q ss_pred HHHHHHhhhhHHH---HHHHHHHHHHhhHHHHHHHHHHHHH
Q 005989 291 EDERKLRKCSESL---HRKLARDLSDMKSSFSNILKELERE 328 (666)
Q Consensus 291 e~ERk~Rrr~E~l---n~KL~~ELae~K~s~~~~~kelE~E 328 (666)
+.-||.-+..|.| |.|-++-.+++|-++...--||-.|
T Consensus 476 e~qrKVeqe~emlKaen~rqakkiefmkEeiQethldyR~e 516 (1265)
T KOG0976|consen 476 EKQRKVEQEYEMLKAENERQAKKIEFMKEEIQETHLDYRSE 516 (1265)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988876 4444555566666666555555444
No 77
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=71.93 E-value=1.6 Score=52.53 Aligned_cols=137 Identities=23% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHH
Q 005989 213 NRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEE-KIIRKD--KERNRIKAAVQSWKDE 289 (666)
Q Consensus 213 nrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEe-K~~wK~--KE~eki~aai~slk~E 289 (666)
+-.=.+++..--.+.-+..|..||..-|.++..|+..+......|..|--+|.+= -.+.+. +.--++.+-|+.|-.+
T Consensus 679 ~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~ 758 (859)
T PF01576_consen 679 SEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEE 758 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHH
Confidence 3333456667777888999999999999999999999999999999998888763 334444 5666778889999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 005989 290 LEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLL 356 (666)
Q Consensus 290 Le~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~l 356 (666)
|+.|.+-+..+...++|+-+=|.|+ .-.++.+||.-.-+-++||.|-.-|..|+..+++.
T Consensus 759 Le~E~r~~~~~~k~~rk~er~~kEl-------~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eea 818 (859)
T PF01576_consen 759 LESEQRRRAEAQKQLRKLERRVKEL-------QFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEA 818 (859)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 9999999999999999998876664 34678899999999999999999999998887764
No 78
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=71.66 E-value=98 Score=37.11 Aligned_cols=138 Identities=17% Similarity=0.173 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Q 005989 274 KERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEV 353 (666)
Q Consensus 274 KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEv 353 (666)
|+.++...-+-.+..+|+..+...-+.+.. |-. +.+.+..|..-+..|..-+..-.-++.+|+-.-+.|...++++
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~---l~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l 250 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESV---LKS-AQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQEL 250 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---hhh-hHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 344445555555555555554444332221 111 2222333333333444555566667778888888899999999
Q ss_pred HHHhcCcchhhhhhhhhhhHHHHHhhhhhHHhhh-hhHhhhhcccchhh---HHHHHHHHHHHHHHhhc
Q 005989 354 RLLRHKPEMDHAHMKNADRLILHISESWLDERMQ-MKIAETQNSLSDKN---TILDKLRLDIENFLQAK 418 (666)
Q Consensus 354 e~lk~es~k~~~ee~eeER~mLq~AEvWrEERvQ-MKL~eAk~~leeK~---s~~dkL~~elE~FL~sk 418 (666)
..|+++..... +.+ -..+--+.+.|..-+.| -.|.++...|-+|+ .+--+|.++|..+...-
T Consensus 251 ~~l~~~~~~l~-~~~--~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 251 EELKAELKELN-DQV--SLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99988765541 222 22333456788888884 55778888899999 88889999998876653
No 79
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=70.81 E-value=15 Score=33.92 Aligned_cols=72 Identities=24% Similarity=0.400 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcC
Q 005989 288 DELEDERKLRKCSESLHRKLARDLSDMKSSF-SNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHK 359 (666)
Q Consensus 288 ~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~-~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~e 359 (666)
.+|..|+..|..+|....++-.||-+.-.++ ..|=+=.-.+|+.+..+|.=-+.|-+.+.+-+..++.|...
T Consensus 1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~q 73 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQ 73 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSS
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999977665 66666678899999999988888888888876666655443
No 80
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=70.35 E-value=66 Score=38.93 Aligned_cols=53 Identities=21% Similarity=0.383 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 235 ELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWK 287 (666)
Q Consensus 235 EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk 287 (666)
+++..+..+..+.+|-...+.+++...++|.+++..+..+.+++...+|+.++
T Consensus 526 ~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~ 578 (771)
T TIGR01069 526 ELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALK 578 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444333
No 81
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=70.21 E-value=76 Score=38.45 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 005989 299 CSESLHRKLARDLSDMKSSFSNILKELER 327 (666)
Q Consensus 299 r~E~ln~KL~~ELae~K~s~~~~~kelE~ 327 (666)
..+.+.++.-..|.++|..+.+.++++.+
T Consensus 567 ~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 567 LLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666666654
No 82
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.09 E-value=1e+02 Score=29.36 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005989 227 ALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVA 265 (666)
Q Consensus 227 slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqla 265 (666)
|.|+.+..|+...+.++..|.+++.....||-.|+....
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e 61 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELREEIVKLMEENE 61 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999999999999999999999988887763
No 83
>PF13514 AAA_27: AAA domain
Probab=69.90 E-value=77 Score=39.50 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcC
Q 005989 322 LKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHK 359 (666)
Q Consensus 322 ~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~e 359 (666)
-.+++.-...-+-+++-.+++...++..+.+++.|...
T Consensus 895 ~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~ 932 (1111)
T PF13514_consen 895 EAELEELEEELEELEEELEELQEERAELEQELEALEGD 932 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34445545555557777777777888888888777654
No 84
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=69.56 E-value=1.3e+02 Score=32.56 Aligned_cols=72 Identities=25% Similarity=0.344 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhHHHHHhhhhhHHhhhhhHhhhhcccchh
Q 005989 321 ILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQMKIAETQNSLSDK 400 (666)
Q Consensus 321 ~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~mLq~AEvWrEERvQMKL~eAk~~leeK 400 (666)
+..|+-+---+|.-||.+|.||-+.....+.|...+. .+.+.-|.-+ .+..|.-|.|....+++.
T Consensus 62 l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~--------~eee~kR~el-------~~kFq~~L~dIq~~~ee~ 126 (309)
T PF09728_consen 62 LQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRA--------REEEEKRKEL-------SEKFQATLKDIQAQMEEQ 126 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Confidence 3344445567889999999999999888777765433 3333334322 456677777777777666
Q ss_pred hHHHHHH
Q 005989 401 NTILDKL 407 (666)
Q Consensus 401 ~s~~dkL 407 (666)
...-.++
T Consensus 127 ~~~~~k~ 133 (309)
T PF09728_consen 127 SERNIKL 133 (309)
T ss_pred cchhHHH
Confidence 5443333
No 85
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.54 E-value=83 Score=32.36 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=17.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 224 SDIALVKALKMELDHSQTKIKELLQE 249 (666)
Q Consensus 224 s~~slv~aL~~EL~~Ar~~I~eL~~E 249 (666)
+....+..|+.||..+++++.++.++
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44455677888888877777776544
No 86
>PRK14154 heat shock protein GrpE; Provisional
Probab=68.21 E-value=1e+02 Score=32.09 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=49.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 222 HVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDEL 290 (666)
Q Consensus 222 ~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~EL 290 (666)
|-+..+-+..|..+|...+.++.+|...-.....+++.+.|....|+...+..--+++-..|-.+.+.|
T Consensus 47 ~~~~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnL 115 (208)
T PRK14154 47 EGLEFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSL 115 (208)
T ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 456677789999999999999999988888888888888888877776555544444444444444443
No 87
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=67.58 E-value=2e+02 Score=31.59 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchh
Q 005989 323 KELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMD 363 (666)
Q Consensus 323 kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~ 363 (666)
.+....++...-+-+=..+||.++.+|..++-.+-++.+.+
T Consensus 165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~ 205 (294)
T COG1340 165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADEL 205 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445677777777777777766654433
No 88
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=67.58 E-value=1.5e+02 Score=35.95 Aligned_cols=160 Identities=19% Similarity=0.262 Sum_probs=86.6
Q ss_pred cccccccCCCCCcccch----HHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005989 189 LDSRGKLGKPRYNLKTS----TELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQV 264 (666)
Q Consensus 189 ~~~k~r~~e~~~~L~tS----~EllkVLnrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kql 264 (666)
.|++...-..++.+.|. +.|..++++-..+--|+++..++......+.+-.+.+|=.|..=--.-+.+|
T Consensus 534 ~D~r~ep~~i~nl~~~irdQikhL~~av~~t~e~srq~~~~~~~~~~~d~d~e~l~eqilKLKSLLSTKREQI------- 606 (717)
T PF09730_consen 534 SDSRKEPMNIYNLVAIIRDQIKHLQRAVDRTTELSRQRVASRSSASEADKDKEELQEQILKLKSLLSTKREQI------- 606 (717)
T ss_pred chhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcccccHHHhHHHHHHHHHHHHHHHHHH-------
Confidence 47776666666666666 4555555555445556655444444333333333344433332222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005989 265 AEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAK 344 (666)
Q Consensus 265 aEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk 344 (666)
|-=+.+-|+-.+ -...||-.||...|.|+.+ -+|.+ .||-+||.-.|--+. ..--+|-=||.
T Consensus 607 aTLRTVLKANKq-TAEvALanLKsKYE~EK~~--v~etm-~kLRnELK~LKEDAA--------------TFsSlRamFa~ 668 (717)
T PF09730_consen 607 ATLRTVLKANKQ-TAEVALANLKSKYENEKAM--VSETM-MKLRNELKALKEDAA--------------TFSSLRAMFAA 668 (717)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhh--HHHHH-HHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Confidence 333334444333 4557899999999999876 34444 567777754432211 12234444666
Q ss_pred hhhchHHHHHHHhcCcchhhhhhhhhhhH----HHHHh
Q 005989 345 GIRDYEEEVRLLRHKPEMDHAHMKNADRL----ILHIS 378 (666)
Q Consensus 345 ~I~e~kaEve~lk~es~k~~~ee~eeER~----mLq~A 378 (666)
.-.+|-.+|.+|.|.- ...|+|++ .|+||
T Consensus 669 RCdEYvtQldemqrqL-----~aAEdEKKTLNsLLRmA 701 (717)
T PF09730_consen 669 RCDEYVTQLDEMQRQL-----AAAEDEKKTLNSLLRMA 701 (717)
T ss_pred HHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHH
Confidence 6666667777777653 34566765 45666
No 89
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.56 E-value=3.6e+02 Score=34.27 Aligned_cols=103 Identities=13% Similarity=0.223 Sum_probs=66.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhHHHHHhhhh-----
Q 005989 307 LARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISESW----- 381 (666)
Q Consensus 307 L~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~mLq~AEvW----- 381 (666)
..++...++.-++.+-.+++..++.|.+...+-.++-..|.+-+.|+..++-+-.... + ++++.-.+|+..=
T Consensus 298 ~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~-~--ee~~~~~rl~~l~~~~~~ 374 (1200)
T KOG0964|consen 298 ISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLV-D--EEKRLKKRLAKLEQKQRD 374 (1200)
T ss_pred HHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-h--HHHHHHHHHHHHHHHHHH
Confidence 3333333444456666778888999999999999999999999999999888755441 2 3445555555432
Q ss_pred ----------------hHHhhhhhHhhhhcccchhhHHHHHHHHHHH
Q 005989 382 ----------------LDERMQMKIAETQNSLSDKNTILDKLRLDIE 412 (666)
Q Consensus 382 ----------------rEERvQMKL~eAk~~leeK~s~~dkL~~elE 412 (666)
||.=+.-.+.+-+-.+.++.-.-+.|+.||+
T Consensus 375 l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~ 421 (1200)
T KOG0964|consen 375 LLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIE 421 (1200)
T ss_pred HHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3333555555555555555555555555444
No 90
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=66.45 E-value=1.6e+02 Score=30.10 Aligned_cols=19 Identities=16% Similarity=0.569 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005989 277 NRIKAAVQSWKDELEDERK 295 (666)
Q Consensus 277 eki~aai~slk~ELe~ERk 295 (666)
..++..|+.++.+++..|+
T Consensus 73 ~~l~~~i~~~~~~i~~~r~ 91 (302)
T PF10186_consen 73 ERLRERIERLRKRIEQKRE 91 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554443
No 91
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=66.40 E-value=1.9e+02 Score=30.95 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=10.7
Q ss_pred HhhhhcccchhhHHHHHHHHHHH
Q 005989 390 IAETQNSLSDKNTILDKLRLDIE 412 (666)
Q Consensus 390 L~eAk~~leeK~s~~dkL~~elE 412 (666)
+.+++..+.+-.+.++.+...|+
T Consensus 248 l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444454544444
No 92
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=66.34 E-value=3.9e+02 Score=34.67 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=21.4
Q ss_pred HhhhhcccchhhHHHHHHHHHHHHHHhhc
Q 005989 390 IAETQNSLSDKNTILDKLRLDIENFLQAK 418 (666)
Q Consensus 390 L~eAk~~leeK~s~~dkL~~elE~FL~sk 418 (666)
..+-.-+|+.|-++|..|..+|+..|+.-
T Consensus 1719 y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1719 YLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44445567788888888888888888764
No 93
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.87 E-value=2.7e+02 Score=33.87 Aligned_cols=191 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred cCCCCCcccchHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 005989 195 LGKPRYNLKTSTELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDK 274 (666)
Q Consensus 195 ~~e~~~~L~tS~EllkVLnrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~K 274 (666)
+++--+.+..+.-++.-+++.|..+.++ ++-|--+..-|-+-...+..+.+.+..+..++..|++.+
T Consensus 348 l~~~~~t~~s~~~~~~r~~q~lke~~k~---~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~---------- 414 (716)
T KOG4593|consen 348 LKNKNSTVTSPARGLERARQLLKEELKQ---VAGITEEETKLKELHETLARRLQKRALLLTQERDLNRAI---------- 414 (716)
T ss_pred hccccccccCcccchHHHHHHHHHHHHH---HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhchH
Q 005989 275 ERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLE----NLCDEFAKGIRDYE 350 (666)
Q Consensus 275 E~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE----~vCdElAk~I~e~k 350 (666)
++-..-+.-+..+|.-=-+.|.+++.|-.++-+-.+++.++......++---++..+-+| ++|+.|-..+.+..
T Consensus 415 --~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~ 492 (716)
T KOG4593|consen 415 --LGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLL 492 (716)
T ss_pred --hhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhcCcchhhhhhhhhhhHHHHHhhhhhHHhhhhhHhhhhcccchhhHHH
Q 005989 351 EEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQMKIAETQNSLSDKNTIL 404 (666)
Q Consensus 351 aEve~lk~es~k~~~ee~eeER~mLq~AEvWrEERvQMKL~eAk~~leeK~s~~ 404 (666)
-..++-.---++. +.+..+...|++--.=+. +||---++..+++++..-|
T Consensus 493 ~qr~e~~~~~e~i--~~~~ke~~~Le~En~rLr--~~~e~~~l~gd~~~~~~rV 542 (716)
T KOG4593|consen 493 FQREESELLREKI--EQYLKELELLEEENDRLR--AQLERRLLQGDYEENITRV 542 (716)
T ss_pred HHHHHhhhhhhHH--HHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhhhccce
No 94
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=65.73 E-value=1.4e+02 Score=33.51 Aligned_cols=101 Identities=15% Similarity=0.246 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLA 308 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~ 308 (666)
|......+..+...+..+.++.......+...+..+.+=...|.. .++.|.+-++.+. .++.. ...+
T Consensus 278 l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~-~~~~i~~~~~~l~-------~L~~~----Y~~F- 344 (412)
T PF04108_consen 278 LQSQRDHIRELYNALSEALEELRKFGERLPSYLAAFHDFEERWEE-EKESIQAYIDELE-------QLCEF----YEGF- 344 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-------HHHHH----HHHH-
Confidence 556666677777777777777777666666666666555555522 3333333333322 11111 1111
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 005989 309 RDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRD 348 (666)
Q Consensus 309 ~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e 348 (666)
-.+..++|.|+++.|..+.-|+.+-.+++.++..
T Consensus 345 ------~~aY~~LL~Ev~RRr~~~~k~~~i~~~~~eeL~~ 378 (412)
T PF04108_consen 345 ------LSAYDSLLLEVERRRAVRDKMKKIIREANEELDK 378 (412)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2466677777777777777777777777766655
No 95
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=64.68 E-value=4.2e+02 Score=34.43 Aligned_cols=149 Identities=15% Similarity=0.238 Sum_probs=67.0
Q ss_pred HHHHHHHHHhccccccccccHHHHHHH-----HHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHH---------H
Q 005989 206 TELLTVLNRIWSLEEQHVSDIALVKAL-----KMELDHSQTKIKELLQEKQ---TERQEVNDLMKQVAEE---------K 268 (666)
Q Consensus 206 ~EllkVLnrIw~leeq~~s~~slv~aL-----~~EL~~Ar~~I~eL~~E~~---s~~~ei~~l~kqlaEe---------K 268 (666)
.||-+.+-.|=....|+.++-.-|..| .+||-..=.+|..|.-+-+ +.=..||-++-+-.-+ .
T Consensus 1471 ~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~ 1550 (1758)
T KOG0994|consen 1471 RELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSE 1550 (1758)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHH
Confidence 556666666666666666666555543 4444445556666543332 2223333333222111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 005989 269 IIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRD 348 (666)
Q Consensus 269 ~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e 348 (666)
+..-++.-+.|+...++|++-|+.=-+.--.++. -+..+-..+..+-+.|++=+......|....-.+..|++
T Consensus 1551 A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~-------ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~e 1623 (1758)
T KOG0994|consen 1551 AERARSRAEDVKGQAEDVVEALEEADVAQGEAQD-------AIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGE 1623 (1758)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122233344444444444444432222111111 111222222222233333333344444444445567888
Q ss_pred hHHHHHHHhcCcc
Q 005989 349 YEEEVRLLRHKPE 361 (666)
Q Consensus 349 ~kaEve~lk~es~ 361 (666)
.+.-|++||.+..
T Consensus 1624 L~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1624 LETRMEELKHKAA 1636 (1758)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887654
No 96
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=64.67 E-value=97 Score=28.51 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 274 KERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMK-------------SSFSNILKELERERKARILLENLCD 340 (666)
Q Consensus 274 KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K-------------~s~~~~~kelE~ErkaRellE~vCd 340 (666)
....++..++.++.++|.+.++-|.++-..|+-|+.|+-+.+ ..+.++-++|+.+|+...+|-.|--
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q 82 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVMKNVFQ 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788889999999999999999999999998886533 3344445555555555555555555
Q ss_pred HHHhh
Q 005989 341 EFAKG 345 (666)
Q Consensus 341 ElAk~ 345 (666)
-|.-|
T Consensus 83 ~lI~g 87 (106)
T PF05837_consen 83 ALIVG 87 (106)
T ss_pred HHHHh
Confidence 44443
No 97
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=64.58 E-value=2.2e+02 Score=34.70 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 005989 253 ERQEVNDLMKQVAEEKIIRK 272 (666)
Q Consensus 253 ~~~ei~~l~kqlaEeK~~wK 272 (666)
...+++.|+..|.+++..+.
T Consensus 514 ~~~~~~~li~~l~~~~~~~e 533 (782)
T PRK00409 514 DKEKLNELIASLEELERELE 533 (782)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 34468888888877766443
No 98
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=64.53 E-value=3.7e+02 Score=33.69 Aligned_cols=110 Identities=20% Similarity=0.265 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAE-EKIIRKDKERNRIKAAVQSWKDE-LEDERKLRKCSESLHRK 306 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaE-eK~~wK~KE~eki~aai~slk~E-Le~ERk~Rrr~E~ln~K 306 (666)
+.+|.+||+++|-.-++-..|++..+++...|...-.. ||+..+ |+++... |--|.+-- .+-..+..
T Consensus 367 l~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~----------~ee~e~~~l~~e~ry~-klkek~t~ 435 (980)
T KOG0980|consen 367 LLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVL----------VEEAENKALAAENRYE-KLKEKYTE 435 (980)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhHHHHHHHHHHHHH-HHHHHHHH
Confidence 56777777777776666666666555554444332211 222111 1111110 11111111 12223455
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 005989 307 LARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDY 349 (666)
Q Consensus 307 L~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~ 349 (666)
|..+-+++..-+....|.+|.+..+-.=++++--+|+..|.+.
T Consensus 436 l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~ 478 (980)
T KOG0980|consen 436 LRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEEL 478 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5666666666677777777777777766666666666555443
No 99
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=63.42 E-value=2.9e+02 Score=32.13 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHhhhhHHHHHHHHHHHHHHHHHHH
Q 005989 226 IALVKALKMELDHSQTKIKELLQ-----EKQTERQEVNDLMKQVAEEKIIRKD 273 (666)
Q Consensus 226 ~slv~aL~~EL~~Ar~~I~eL~~-----E~~s~~~ei~~l~kqlaEeK~~wK~ 273 (666)
-+-|..|+.+|..+...|..|.= .-......|+.|-..|.-|..|.+.
T Consensus 255 ~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~ 307 (569)
T PRK04778 255 EKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKY 307 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678888888887766665543 3344566788888888888776654
No 100
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=63.30 E-value=80 Score=35.93 Aligned_cols=37 Identities=8% Similarity=0.214 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005989 228 LVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVA 265 (666)
Q Consensus 228 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqla 265 (666)
-|.+|+.+|+..+..+..+..+.......+..| ..+.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l-~~~~ 108 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFL-EDIR 108 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Confidence 578888888888888888888777777766433 4443
No 101
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=61.56 E-value=3.2e+02 Score=35.40 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=13.6
Q ss_pred hhhhhccCCCCCccCcccccCCCCcC
Q 005989 614 QKWMSKLTSPDFEKSESSLKVPRGLK 639 (666)
Q Consensus 614 rqw~~~~~s~d~~~se~s~~~p~g~k 639 (666)
+-|.---+.|.+-|-+.. .|++++
T Consensus 1315 ~~Wg~Y~tVp~laI~el~--R~~~~~ 1338 (1353)
T TIGR02680 1315 REWGCYPEVPGLAICQLL--RPDGVD 1338 (1353)
T ss_pred chhccccCCCcceEEEEe--cCCCCC
Confidence 456655666776664433 555554
No 102
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=61.36 E-value=1.9e+02 Score=29.41 Aligned_cols=103 Identities=19% Similarity=0.225 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005989 228 LVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKL 307 (666)
Q Consensus 228 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL 307 (666)
+|.=+...|..++..+-.++..++....+++.+-..+ .-|. ++...||+.= |-=|
T Consensus 32 ~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~----~~~~----~~A~~Al~~G-----------------~EdL 86 (219)
T TIGR02977 32 IIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQV----ADWQ----EKAELALSKG-----------------REDL 86 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHCC-----------------CHHH
Confidence 4555666777777777777777766666555544433 2232 2333343332 2236
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhc
Q 005989 308 ARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRH 358 (666)
Q Consensus 308 ~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~ 358 (666)
|++..+-|..+...+..|+.+-.. +...+++|-..|.+.+.+++.+|.
T Consensus 87 Ar~Al~~k~~~~~~~~~l~~~~~~---~~~~v~~l~~~l~~L~~ki~~~k~ 134 (219)
T TIGR02977 87 ARAALIEKQKAQELAEALERELAA---VEETLAKLQEDIAKLQAKLAEARA 134 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666655433 777778888888888888777664
No 103
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=61.13 E-value=1.3e+02 Score=27.23 Aligned_cols=86 Identities=27% Similarity=0.318 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHH
Q 005989 238 HSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSS 317 (666)
Q Consensus 238 ~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s 317 (666)
+|.....++...+...-.-++..+-++.-||. |+..++.++-.+ ++-|..|.+.=+..-.=|..+...|.++...
T Consensus 10 ~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~----kadqkyfa~mr~-~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~ 84 (96)
T PF08647_consen 10 QAFKELSEQADKKVKELTILEQKKLRLEAEKA----KADQKYFAAMRS-KDALDNEMKKLNTQLSKSSELIEQLKETEKE 84 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444444444444444445556666665544 566666666555 4557777555555556678888999999999
Q ss_pred HHHHHHHHHHH
Q 005989 318 FSNILKELERE 328 (666)
Q Consensus 318 ~~~~~kelE~E 328 (666)
|...++++|+|
T Consensus 85 ~~~~l~~~Eke 95 (96)
T PF08647_consen 85 FVRKLKNLEKE 95 (96)
T ss_pred HHHHHHHhhcc
Confidence 99999999986
No 104
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=60.99 E-value=2e+02 Score=29.36 Aligned_cols=110 Identities=19% Similarity=0.207 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhHHHHHhhh
Q 005989 304 HRKLARDLSDMKS---SFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISES 380 (666)
Q Consensus 304 n~KL~~ELae~K~---s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~mLq~AEv 380 (666)
|++|..-|..+.. .+.+-++.|++.+.+-.-+..--..+-+.|.+.+-|-+.|.+.. ..++.||..|+---.
T Consensus 57 N~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~-----~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 57 NKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRF-----EKLEQERDELYRKFE 131 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 5555555554433 35556667777777766667777777888888888888888754 456788877763221
Q ss_pred hhHHhhhhhHhhhhcccchhhHHH----HHHHHHHHHHHhhc
Q 005989 381 WLDERMQMKIAETQNSLSDKNTIL----DKLRLDIENFLQAK 418 (666)
Q Consensus 381 WrEERvQMKL~eAk~~leeK~s~~----dkL~~elE~FL~sk 418 (666)
=-=.=||.|..---+.|+.|...| ++-.++|...|.+.
T Consensus 132 ~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~ 173 (201)
T PF13851_consen 132 SAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAA 173 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 111224555544445555555443 44455555665554
No 105
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=60.95 E-value=2.1e+02 Score=29.59 Aligned_cols=86 Identities=19% Similarity=0.337 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHhhHH
Q 005989 242 KIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNR---IKAAVQSWKDELEDERKLRKCSES-LHRKLARDLSDMKSS 317 (666)
Q Consensus 242 ~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~ek---i~aai~slk~ELe~ERk~Rrr~E~-ln~KL~~ELae~K~s 317 (666)
++.++..--...-..+..|-..+.+|+.-+....... +..-|..+..-++.||..|...|. +-+||..+...+.
T Consensus 86 ~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~-- 163 (247)
T PF06705_consen 86 KQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQ-- 163 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4444444455566778888888888888888876664 666788889999999999976654 5566666555544
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005989 318 FSNILKELERERKARIL 334 (666)
Q Consensus 318 ~~~~~kelE~ErkaRel 334 (666)
..++.|+..|+.
T Consensus 164 -----~~i~~Ek~~Re~ 175 (247)
T PF06705_consen 164 -----EKIEKEKNTRES 175 (247)
T ss_pred -----HHHHHHHHHHHH
Confidence 334556666543
No 106
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=60.57 E-value=5.7e+02 Score=34.53 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005989 261 MKQVAEEKIIRKDKERNRIKA 281 (666)
Q Consensus 261 ~kqlaEeK~~wK~KE~eki~a 281 (666)
++.+.+|---||.+-++-+..
T Consensus 1280 l~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1280 LKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788776665444
No 107
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=60.25 E-value=2.2e+02 Score=29.74 Aligned_cols=143 Identities=13% Similarity=0.189 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLA 308 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~ 308 (666)
|.-++.+|..|+..+-+++..++....+++.+.... ..|. .+.+.=+..-|-.||
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~----~k~e---------------------~~A~~Al~~g~E~LA 87 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARA----EKLE---------------------EKAELALQAGNEDLA 87 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---------------------HHHHHHHHCCCHHHH
Confidence 556667777777777777777766655555443322 2233 333333344457788
Q ss_pred HHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhHHHHHhhhhhHH
Q 005989 309 RDLSDMKSSFSNILKELERER----KARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISESWLDE 384 (666)
Q Consensus 309 ~ELae~K~s~~~~~kelE~Er----kaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~mLq~AEvWrEE 384 (666)
+++.+.+.++-+.++-++.+- ...+-|+.--.+|-..|.+.++... .+.-.|--.
T Consensus 88 r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~---------------------~l~ar~~~a 146 (225)
T COG1842 88 REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKE---------------------ALKARKAAA 146 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHH
Confidence 888777766665555444332 1222222222233333333333332 333344555
Q ss_pred hhhhhHhhhhcc--cchhhHHHHHHHHHHHHHHhh
Q 005989 385 RMQMKIAETQNS--LSDKNTILDKLRLDIENFLQA 417 (666)
Q Consensus 385 RvQMKL~eAk~~--leeK~s~~dkL~~elE~FL~s 417 (666)
++|.++...-.. ...=+..++++..-|+.+-..
T Consensus 147 kA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~ 181 (225)
T COG1842 147 KAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREAR 181 (225)
T ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 666666543322 234556666666666655433
No 108
>PRK03918 chromosome segregation protein; Provisional
Probab=58.85 E-value=3.9e+02 Score=32.05 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDL 260 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l 260 (666)
+..+..+|+..+..+.+|.++......++..+
T Consensus 181 l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l 212 (880)
T PRK03918 181 LEKFIKRTENIEELIKEKEKELEEVLREINEI 212 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433333333333
No 109
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=58.73 E-value=3.1e+02 Score=34.06 Aligned_cols=77 Identities=22% Similarity=0.209 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhHHHHHhhhhhHHhhhhhHhhhhcccch-
Q 005989 321 ILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQMKIAETQNSLSD- 399 (666)
Q Consensus 321 ~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~mLq~AEvWrEERvQMKL~eAk~~lee- 399 (666)
.-..+|+||+-+++--.+...=+..|.+--.-+..+--... .+.-+ .||--++.-|- .|--+-+-|++|..
T Consensus 999 ~q~~~Eqer~D~~la~RlA~sd~~~v~d~~~~~~~~v~~~~-----~m~P~-k~l~r~~~v~a--~~aa~~~~KYDl~~w 1070 (1259)
T KOG0163|consen 999 RQNQLEQERRDHELALRLANSDGGQVEDSPPVIRALVNDAS-----PMGPN-KMLIRSENVRA--QQAALGKQKYDLSKW 1070 (1259)
T ss_pred HHhHHHHHHHHHHHHHHHhhccCCccccccHHHHhhccccC-----CCCCc-cccccchhhhH--HHHHhccCccccccc
Confidence 33447777777776666655555445443333333322211 12222 23332332221 13445567788877
Q ss_pred hhHHHH
Q 005989 400 KNTILD 405 (666)
Q Consensus 400 K~s~~d 405 (666)
||+.|-
T Consensus 1071 kyaeLR 1076 (1259)
T KOG0163|consen 1071 KYAELR 1076 (1259)
T ss_pred cHHHHH
Confidence 787654
No 110
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=58.71 E-value=2.7e+02 Score=30.14 Aligned_cols=66 Identities=20% Similarity=0.345 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005989 278 RIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGI 346 (666)
Q Consensus 278 ki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I 346 (666)
++.+....|+.|+...+..-..++.... .||..++..+...-.+++.-|+.-.-++.-..++-..|
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~~~e~~~~D~---~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQLVEEIESCDQ---EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555444433333332 44445555554444444444443333333333333333
No 111
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=58.56 E-value=1.2e+02 Score=28.65 Aligned_cols=47 Identities=28% Similarity=0.444 Sum_probs=37.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 005989 221 QHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDK 274 (666)
Q Consensus 221 q~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~K 274 (666)
.|+.++-.|.+|+.++...+..|.+|..+..+.+..+ ...+..|...
T Consensus 53 ~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l-------~~~e~sw~~q 99 (132)
T PF07926_consen 53 KHAEDIKELQQLREELQELQQEINELKAEAESAKAEL-------EESEASWEEQ 99 (132)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHH
Confidence 3888899999999999999999999988877766654 5666667663
No 112
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=58.04 E-value=2.1e+02 Score=29.75 Aligned_cols=79 Identities=19% Similarity=0.313 Sum_probs=44.9
Q ss_pred hHHHHHHHHH---HHHHhhHHHHHHH--------HHHHHHHHHHHHH-HHHHHHHHhhhhchHHHHHHHhcCcchhhhhh
Q 005989 300 SESLHRKLAR---DLSDMKSSFSNIL--------KELERERKARILL-ENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHM 367 (666)
Q Consensus 300 ~E~ln~KL~~---ELae~K~s~~~~~--------kelE~ErkaRell-E~vCdElAk~I~e~kaEve~lk~es~k~~~ee 367 (666)
.+.+..|++. ||++.+..+..+. -..-.+-+++..- ...-+.|-.++..+++|+...++..+.. +..
T Consensus 82 a~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q-~~~ 160 (202)
T PF06818_consen 82 AELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQ-RSS 160 (202)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHH-HHH
Confidence 3446666655 6777776666651 0001112222222 3345556666777777777777666554 467
Q ss_pred hhhhhHHHHHhhhhhHHh
Q 005989 368 KNADRLILHISESWLDER 385 (666)
Q Consensus 368 ~eeER~mLq~AEvWrEER 385 (666)
.+.||. +|.||.
T Consensus 161 Fe~ER~------~W~eEK 172 (202)
T PF06818_consen 161 FEQERR------TWQEEK 172 (202)
T ss_pred HHHHHH------HHHHHH
Confidence 788886 488885
No 113
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=57.91 E-value=1.9e+02 Score=28.22 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005989 232 LKMELDHSQTKIKELLQEKQTERQEVNDLMKQVA 265 (666)
Q Consensus 232 L~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqla 265 (666)
+..|+.-++.++.+|.+|-......+..+...+.
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELE 112 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555554444444444444443
No 114
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=57.74 E-value=3.1e+02 Score=33.46 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHH
Q 005989 254 RQEVNDLMKQVAEEKI 269 (666)
Q Consensus 254 ~~ei~~l~kqlaEeK~ 269 (666)
..+++.|+.+|.+++.
T Consensus 510 ~~~~~~li~~L~~~~~ 525 (771)
T TIGR01069 510 KEEINVLIEKLSALEK 525 (771)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4467777777766665
No 115
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=57.69 E-value=2.1e+02 Score=32.05 Aligned_cols=116 Identities=16% Similarity=0.234 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005989 227 ALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKER-NRIKAAVQSWKDELEDERKLRKCSESLHR 305 (666)
Q Consensus 227 slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~-eki~aai~slk~ELe~ERk~Rrr~E~ln~ 305 (666)
-+...+..=+..|+.++..|.............++.-|.|+-..-...+- ..+...+...+.-.+++.+.++.-+.-..
T Consensus 310 ~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~ 389 (432)
T smart00498 310 KFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRK 389 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666688999999999999999999999999999887653111111 34444444444444444444444455566
Q ss_pred HHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 306 KLARDLSDMKSS-----FSNILKELERERKARILLENLCDEF 342 (666)
Q Consensus 306 KL~~ELae~K~s-----~~~~~kelE~ErkaRellE~vCdEl 342 (666)
++++|..+-... -...+.+...++....+|..||.++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~ 431 (432)
T smart00498 390 QLVKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEEL 431 (432)
T ss_pred HHHHHHHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhh
Confidence 666666554432 2345667778888888888888875
No 116
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.38 E-value=4e+02 Score=31.78 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=29.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q 005989 311 LSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVR 354 (666)
Q Consensus 311 Lae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve 354 (666)
+-+++-.+..+..+++.......=+...-.|+-...+.++.|+-
T Consensus 427 ~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~ 470 (581)
T KOG0995|consen 427 LDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELK 470 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567777777777777777777777777776666665553
No 117
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=56.86 E-value=2.4e+02 Score=28.98 Aligned_cols=120 Identities=18% Similarity=0.281 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005989 228 LVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKL 307 (666)
Q Consensus 228 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL 307 (666)
-+.+.+.=|+.|.++...+.-.. ..+ .||.++... +|+.- -+-+.+.+..+..+|. ++|+.++.+|+.=
T Consensus 98 d~~~w~~al~na~a~lehq~~R~----~NL-eLl~~~g~n--aW~~~-n~~Le~~~~~le~~l~---~~k~~ie~vN~~R 166 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLEHQRLRL----ENL-ELLSKYGEN--AWLIH-NEQLEAMLKRLEKELA---KLKKEIEEVNRER 166 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH----HHH-HHHHHHhHH--HHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 45556666666666554332211 123 266666654 56532 2334444555554443 4566677777543
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhc
Q 005989 308 ARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRH 358 (666)
Q Consensus 308 ~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~ 358 (666)
-..=.++..-+...-+....=-...--||..|-+|-.+|.+.+++-..++.
T Consensus 167 K~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 167 KRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 332222222222222222222233445677777777666665555544443
No 118
>PRK04863 mukB cell division protein MukB; Provisional
Probab=56.33 E-value=6.1e+02 Score=33.55 Aligned_cols=6 Identities=17% Similarity=0.595 Sum_probs=3.1
Q ss_pred hhhhhh
Q 005989 613 VQKWMS 618 (666)
Q Consensus 613 ~rqw~~ 618 (666)
.|||.+
T Consensus 765 ~~~~r~ 770 (1486)
T PRK04863 765 DRQWRY 770 (1486)
T ss_pred chhhhh
Confidence 356644
No 119
>PRK09039 hypothetical protein; Validated
Probab=56.08 E-value=1.7e+02 Score=32.13 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=34.9
Q ss_pred HHhccccccccccH-HHHHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHHH
Q 005989 213 NRIWSLEEQHVSDI-ALVKALKMELDHSQTKIKELLQEKQ-------TERQEVNDLMKQVAEEKIIR 271 (666)
Q Consensus 213 nrIw~leeq~~s~~-slv~aL~~EL~~Ar~~I~eL~~E~~-------s~~~ei~~l~kqlaEeK~~w 271 (666)
..+-+++.+...++ .-|..|+.+|..|+++-.+|+.-.. .....+..+-..|+++|...
T Consensus 66 ~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~ 132 (343)
T PRK09039 66 ADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVS 132 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 33335555554433 5677888888877777777766322 22344555566666666644
No 120
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=55.64 E-value=3.2e+02 Score=30.15 Aligned_cols=161 Identities=17% Similarity=0.348 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHH--HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005989 229 VKALKMELDHSQTKIKE----LLQEKQTERQEVNDLMKQ--VAEEK----IIRKDKERNRIKAAVQSWKDELEDERKLRK 298 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~e----L~~E~~s~~~ei~~l~kq--laEeK----~~wK~KE~eki~aai~slk~ELe~ERk~Rr 298 (666)
|.-|+.||+.-+.+-++ ...+-...+...+.|-+- |.||. ..+=+.+-.-+.|----+..+|+.|+..+.
T Consensus 8 ia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~ke 87 (305)
T PF14915_consen 8 IAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKE 87 (305)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHH
Confidence 66788888877665543 333444444445555543 33443 334455555556666667889999999988
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh-------hhhchHHHHHHHhcCcchhhhhh
Q 005989 299 CSESLHRKLARDLSDMKSSFSNILKELERERKARI----LLENLCDEFAK-------GIRDYEEEVRLLRHKPEMDHAHM 367 (666)
Q Consensus 299 r~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRe----llE~vCdElAk-------~I~e~kaEve~lk~es~k~~~ee 367 (666)
|+|. |+.-..+-+..|++|++.=-.++. .+....||-.. .|...+...+-|-+...++...-
T Consensus 88 rLEt-------EiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~ 160 (305)
T PF14915_consen 88 RLET-------EIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKF 160 (305)
T ss_pred HHHH-------HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHH
Confidence 7653 333333344455555554333322 23334444333 34444444444444433321111
Q ss_pred hhhhhHHHHHhhhhhH-----HhhhhhHhhhhcc
Q 005989 368 KNADRLILHISESWLD-----ERMQMKIAETQNS 396 (666)
Q Consensus 368 ~eeER~mLq~AEvWrE-----ERvQMKL~eAk~~ 396 (666)
---+-++-+..+++|| |.||.-|..+..+
T Consensus 161 nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q 194 (305)
T PF14915_consen 161 NSLEIELHHTRDALREKTLALESVQRDLSQTQCQ 194 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223334444555544 4556555555544
No 121
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=55.48 E-value=1.8e+02 Score=34.93 Aligned_cols=33 Identities=27% Similarity=0.498 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhccccccCCCCCCCCCCcccc
Q 005989 15 KQELKMKVKKLKKGGIQVGKRSGPSTPSPIWRL 47 (666)
Q Consensus 15 ~~~~~~~~~klrkr~ilvGkR~GpsTP~p~Wkl 47 (666)
+..+...+++|=-.--||-=-++|.-|-+.|.|
T Consensus 66 ~~~li~il~~lP~~tkLVQVTg~~g~~~sL~~l 98 (652)
T COG2433 66 KRDLIRILKRLPEGTKLVQVTGRPGEQESLWEL 98 (652)
T ss_pred hhHHHHHHHhCCCCceEEEEeCCCCCcchHHHH
Confidence 445555554442112233334677778888876
No 122
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=55.16 E-value=4.2e+02 Score=32.62 Aligned_cols=117 Identities=24% Similarity=0.381 Sum_probs=72.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 005989 225 DIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKL-------- 296 (666)
Q Consensus 225 ~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~-------- 296 (666)
..+....|..+|+........|+-+......+++.++-+|.|=. .-|.+|+.+|+.=+++
T Consensus 587 ~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E------------~~L~eLq~eL~~~keS~s~~E~ql 654 (769)
T PF05911_consen 587 DTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESE------------QKLEELQSELESAKESNSLAETQL 654 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888888888888888888888888888874311 2333444444433333
Q ss_pred ------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCc
Q 005989 297 ------RKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKP 360 (666)
Q Consensus 297 ------Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es 360 (666)
.+-++.--.-+-.|+.++..-+...--+|++||.. |.|+...-.+.+.+++..+++.
T Consensus 655 ~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~-------~~e~~~kc~~Le~el~r~~~~~ 717 (769)
T PF05911_consen 655 KAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERAL-------SEELEAKCRELEEELERMKKEE 717 (769)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------chhhhhHHHHHHHHHHhhhccc
Confidence 33333332333456666666666666677777754 7776666677777777766553
No 123
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.42 E-value=5.3e+02 Score=32.25 Aligned_cols=60 Identities=25% Similarity=0.347 Sum_probs=34.5
Q ss_pred hhHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhc
Q 005989 299 CSESLHRKL---ARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRH 358 (666)
Q Consensus 299 r~E~ln~KL---~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~ 358 (666)
++|.||-|+ ---|.++..-+.+...++|.=++.|+++-.--++|-..|.|+.+.+-.|-.
T Consensus 445 eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~ 507 (1118)
T KOG1029|consen 445 ELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAP 507 (1118)
T ss_pred HHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344455443 223445555555666666666666666666666666666666665554443
No 124
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=54.41 E-value=1.4e+02 Score=30.83 Aligned_cols=104 Identities=14% Similarity=0.210 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--hHHHHHHH
Q 005989 279 IKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRD--YEEEVRLL 356 (666)
Q Consensus 279 i~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e--~kaEve~l 356 (666)
|..-|..+..+++..||. ...-+.|+.+.+.++-.++. ||+..-+..|+|+=+--.. ++.++..+
T Consensus 91 ~~~eL~~l~~~~e~~RK~---~ke~~~k~~k~~~~a~~~le----------KAK~~Y~~~c~e~Ekar~~~~~~~~~~~~ 157 (234)
T cd07652 91 MSDELSSLAKTVEKSRKS---IKETGKRAEKKVQDAEAAAE----------KAKARYDSLADDLERVKTGDPGKKLKFGL 157 (234)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhccCCCccccccc
Confidence 444566667777766654 66677889888888776664 4566666788887322212 22112222
Q ss_pred hcCcchhhhhhhhhhhHHHHHhhhhhHHhhhhhHhhhhcccchhhHHHHHHHHHHH
Q 005989 357 RHKPEMDHAHMKNADRLILHISESWLDERMQMKIAETQNSLSDKNTILDKLRLDIE 412 (666)
Q Consensus 357 k~es~k~~~ee~eeER~mLq~AEvWrEERvQMKL~eAk~~leeK~s~~dkL~~elE 412 (666)
+.. +- ... .||..|-|..+|+.+.-.+....+.++.++.
T Consensus 158 k~~--~~-~~~--------------~Ee~~~~K~~~A~~~Y~~~v~~~n~~q~e~~ 196 (234)
T cd07652 158 KGN--KS-AAQ--------------HEDELLRKVQAADQDYASKVNAAQALRQELL 196 (234)
T ss_pred cch--hh-HHH--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 11 011 2334555666676666666666666666654
No 125
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=54.28 E-value=2.6e+02 Score=33.57 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhHHHHHhh
Q 005989 335 LENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISE 379 (666)
Q Consensus 335 lE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~mLq~AE 379 (666)
++.--+.|-+.+.+-+.+|+.|+++.. ++..=+.|..-.+
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~-----~l~k~~~lE~sG~ 518 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLA-----ELRKMRKLELSGK 518 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhhcCC
Confidence 455566677777777777777777533 3334455554433
No 126
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=54.16 E-value=2.6e+02 Score=28.56 Aligned_cols=110 Identities=17% Similarity=0.336 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HhhHHHHH
Q 005989 242 KIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLS-DMKSSFSN 320 (666)
Q Consensus 242 ~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELa-e~K~s~~~ 320 (666)
.|..+.+||-....+-..-|.+|+-.-. ...+-.-+..++..|..|.+. +-..|..|+..|. ++..-|..
T Consensus 23 el~~f~keRa~iE~eYak~L~kLakk~~--~~~~~gsl~~a~~~i~~e~e~-------~a~~H~~~a~~L~~~v~~~l~~ 93 (236)
T cd07651 23 ELRSFYKERASIEEEYAKRLEKLSRKSL--GGSEEGGLKNSLDTLRLETES-------MAKSHLKFAKQIRQDLEEKLAA 93 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCCcchHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455655544443333434432111 112234466677777766654 2345566666665 45566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchh
Q 005989 321 ILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMD 363 (666)
Q Consensus 321 ~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~ 363 (666)
+.++++++||. ++.--..+.+....-...|+..|..-...
T Consensus 94 ~~~~~~~~rK~---~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~ 133 (236)
T cd07651 94 FASSYTQKRKK---IQSHMEKLLKKKQDQEKYLEKAREKYEAD 133 (236)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666553 22222233333333344555555554444
No 127
>PRK14140 heat shock protein GrpE; Provisional
Probab=53.71 E-value=2.7e+02 Score=28.63 Aligned_cols=68 Identities=10% Similarity=0.186 Sum_probs=43.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 223 VSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDEL 290 (666)
Q Consensus 223 ~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~EL 290 (666)
.+..-+|..|..+|+..+..|.+|...-....-+++.+.|....|+...+.--.+++-..+-.+-+-|
T Consensus 33 ~~~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnL 100 (191)
T PRK14140 33 ESEAELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNF 100 (191)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777788888888888887776666666677777777766666555444444444444444444
No 128
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=53.53 E-value=4.4 Score=49.02 Aligned_cols=93 Identities=20% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKD--KERNRIKAAVQSWKDELEDERKLRKCSESLHRK 306 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~--KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 306 (666)
|--|..+|+.+++.+..|.+-++..-+.+..+..++.+....+-. ++.....+-|..|+.+|+.-.-..-.++.-|+.
T Consensus 358 leDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~ 437 (859)
T PF01576_consen 358 LEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQ 437 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 445677788888888888887777777676666666554432222 233445566788888888888888889999999
Q ss_pred HHHHHHHhhHHHHHH
Q 005989 307 LARDLSDMKSSFSNI 321 (666)
Q Consensus 307 L~~ELae~K~s~~~~ 321 (666)
|..||.++...+..+
T Consensus 438 L~~El~dl~~q~~~~ 452 (859)
T PF01576_consen 438 LQDELEDLTSQLDDA 452 (859)
T ss_dssp ---------------
T ss_pred HHHhhccchhhhhhh
Confidence 999999987765544
No 129
>PRK14158 heat shock protein GrpE; Provisional
Probab=53.40 E-value=1.5e+02 Score=30.55 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=35.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005989 223 VSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIR 271 (666)
Q Consensus 223 ~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~w 271 (666)
+..-.-+..|+.+|.....++.+|...-....-+++.+.|+...|+...
T Consensus 36 ~~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~ 84 (194)
T PRK14158 36 VAAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEEL 84 (194)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444567788888888888888887776667777777777776666533
No 130
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=53.35 E-value=84 Score=29.79 Aligned_cols=57 Identities=19% Similarity=0.392 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 005989 273 DKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERER 329 (666)
Q Consensus 273 ~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~Er 329 (666)
.++.+.+.+.+......++...+.-+.+-.|-.|..+||+++|........+|-.-.
T Consensus 6 ~~~~~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG~ 62 (125)
T PF03245_consen 6 KRQRDQAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAGN 62 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCC
Confidence 446667777888888889999999999999999999999999999988888877663
No 131
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=53.30 E-value=2.6e+02 Score=28.91 Aligned_cols=73 Identities=32% Similarity=0.504 Sum_probs=51.0
Q ss_pred HHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHH
Q 005989 243 IKELLQEKQTERQEV---NDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFS 319 (666)
Q Consensus 243 I~eL~~E~~s~~~ei---~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~ 319 (666)
|.+|+.|++.....+ |.|.--|. +|++ -++..||.|+.-.+++|.-|+|+...|.|-+.=.+
T Consensus 115 i~eLe~EKrkh~~~~aqgDD~t~lLE--------kERe-------RLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K 179 (192)
T PF09727_consen 115 IQELEEEKRKHAEDMAQGDDFTNLLE--------KERE-------RLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLK 179 (192)
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHH--------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888887654322 23333332 2333 46678999999999999999999988888777777
Q ss_pred HHHHHHHHHHH
Q 005989 320 NILKELERERK 330 (666)
Q Consensus 320 ~~~kelE~Erk 330 (666)
.++--|-+|++
T Consensus 180 ~~~l~Lv~E~k 190 (192)
T PF09727_consen 180 SFVLMLVKERK 190 (192)
T ss_pred HHHHHHHHHHh
Confidence 77766666665
No 132
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.13 E-value=1.9e+02 Score=33.29 Aligned_cols=128 Identities=20% Similarity=0.200 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQ----TERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLH 304 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~----s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln 304 (666)
+.-|+++|+-|++.+.-..+=-- +....|+-..++-.||-++-+.-..+-|...=-.+-.-|+.||..-++ --
T Consensus 40 l~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q~~~~leqertq~qq---~~ 116 (542)
T KOG0993|consen 40 LGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPTYECQMCQNLEQERTQLQQ---NE 116 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCccHHHHHHHHHHHHHHHHHH---HH
Confidence 46678888888876654433211 122356666777767766666555554444444455557777654433 44
Q ss_pred HHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcch
Q 005989 305 RKLARDLSDMKSSFSN--ILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEM 362 (666)
Q Consensus 305 ~KL~~ELae~K~s~~~--~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k 362 (666)
.++-+|+..++--++. +.-+||+|++-+.=.++--.|+.. -.+.||.+||.+..+
T Consensus 117 e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~---pmekeI~elk~kl~~ 173 (542)
T KOG0993|consen 117 EKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVT---PMEKEINELKKKLAK 173 (542)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHh---hHHHHHHHHHHHHHh
Confidence 6788899988888888 888999998766555544455533 356677777765444
No 133
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=52.89 E-value=4.1e+02 Score=31.69 Aligned_cols=17 Identities=29% Similarity=0.216 Sum_probs=12.8
Q ss_pred Ccccccccccccc--cccc
Q 005989 461 NEEYSTDVDLQVL--ELNK 477 (666)
Q Consensus 461 dd~dS~~sDlh~~--Eln~ 477 (666)
+||+.|-+|...+ |+|.
T Consensus 505 ~eI~KIl~DTr~lQkeiN~ 523 (594)
T PF05667_consen 505 EEIEKILSDTRELQKEINS 523 (594)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788888888777 6664
No 134
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=52.80 E-value=2.7e+02 Score=28.41 Aligned_cols=26 Identities=15% Similarity=0.440 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005989 236 LDHSQTKIKELLQEKQTERQEVNDLM 261 (666)
Q Consensus 236 L~~Ar~~I~eL~~E~~s~~~ei~~l~ 261 (666)
|..-+..|.++..+....+.+|+.++
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l 47 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEIL 47 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444433
No 135
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=52.09 E-value=4.6e+02 Score=30.90 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005989 239 SQTKIKELLQEKQTERQEVNDLMKQV 264 (666)
Q Consensus 239 Ar~~I~eL~~E~~s~~~ei~~l~kql 264 (666)
.+.++.+|..+......+++.+-++|
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l 414 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 136
>PRK14139 heat shock protein GrpE; Provisional
Probab=51.87 E-value=1.2e+02 Score=30.93 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKI 269 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~ 269 (666)
+..|+.+|+..+.++.+|........-+++.+.|.+..|+.
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e 74 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVA 74 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888877776677777777777766665
No 137
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=51.31 E-value=4.4e+02 Score=30.40 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 005989 232 LKMELDHSQTKIKELLQEKQTER 254 (666)
Q Consensus 232 L~~EL~~Ar~~I~eL~~E~~s~~ 254 (666)
+..-+.+|+.+|..|.++....+
T Consensus 249 ~~~~i~~a~~~i~~L~~~l~~l~ 271 (582)
T PF09731_consen 249 LNSLIAHAKERIDALQKELAELK 271 (582)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666554433
No 138
>PRK14143 heat shock protein GrpE; Provisional
Probab=51.07 E-value=3.2e+02 Score=28.98 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005989 228 LVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKE 275 (666)
Q Consensus 228 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE 275 (666)
-+..|+.+|...+..+.+|...-....-+++.+.|+...|+...+..-
T Consensus 68 ~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a 115 (238)
T PRK14143 68 RLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQL 115 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777766666666677777776666555443333
No 139
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=50.87 E-value=6.5e+02 Score=32.25 Aligned_cols=219 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005989 226 IALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHR 305 (666)
Q Consensus 226 ~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~ 305 (666)
+++..-+..++..++++|+.|-.--.....++..|.-.+.++|. +....--...-+...++.=+.+--.+|.-|.
T Consensus 473 ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elke-----Q~kt~~~qye~~~~k~eeLe~~l~~lE~ENa 547 (1195)
T KOG4643|consen 473 LSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKE-----QYKTCDIQYELLSNKLEELEELLGNLEEENA 547 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHhhH--------------------HHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhchHHHHHHHhcC----
Q 005989 306 KLARDLSDMKS--------------------SFSNILKELERERKARILLENL--CDEFAKGIRDYEEEVRLLRHK---- 359 (666)
Q Consensus 306 KL~~ELae~K~--------------------s~~~~~kelE~ErkaRellE~v--CdElAk~I~e~kaEve~lk~e---- 359 (666)
-|-+++.-.+. -..+++.-|+..|+-++.||.- --+++-.--.++.-|+.|+..
T Consensus 548 ~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~~~~kr~ie~Lr~~~~kl 627 (1195)
T KOG4643|consen 548 HLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRRKESKL 627 (1195)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchhhhHHHHHHHHHhh
Q ss_pred -cchhhhhhhhhhhHHHHHhhhhhHHhhhhhHhhhhcccchhhHHHHHHHHHHHHHHhhcccCCcCCCCCCCchhhhhhc
Q 005989 360 -PEMDHAHMKNADRLILHISESWLDERMQMKIAETQNSLSDKNTILDKLRLDIENFLQAKHFSKSRTGGSLSTNEQKKSH 438 (666)
Q Consensus 360 -s~k~~~ee~eeER~mLq~AEvWrEERvQMKL~eAk~~leeK~s~~dkL~~elE~FL~sk~~~~~~~~~~~~~~e~~~a~ 438 (666)
..|. +...++-+=|--.. .--+=+|-||..-.+.|--++.++.-+...+.. ...+-+..+.+.....
T Consensus 628 l~~Kk--dr~ree~kel~~ek-l~ve~l~e~l~~lp~~fkt~n~e~l~V~sn~lE--e~qr~~~~~sn~~~~l------- 695 (1195)
T KOG4643|consen 628 LKEKK--DRNREETKELMDEK-LQVEDLQEKLRELPLEFKTKNDEILMVGSNILE--ERQRLGGCKSNAEIDL------- 695 (1195)
T ss_pred cchhH--HHHHHHHhhccccc-hhHHHHHHHHHhCchhhccccchhhhhhhhhhh--hhhhhccccccchHHH-------
Q ss_pred ccccccccccCCC---cccCCCCCCCc
Q 005989 439 SSRHSTESFPLNE---AVSAPRDTVNE 462 (666)
Q Consensus 439 ~~r~~leSv~~~~---~~~~p~~~~dd 462 (666)
.++.+.++++++ .+-+|....+.
T Consensus 696 -~q~~i~~~q~~~ele~teapt~lq~~ 721 (1195)
T KOG4643|consen 696 -LQVSIRNSQIQGELENTEAPTKLQDE 721 (1195)
T ss_pred -HHHHHhcccccchhhcCCCccccchh
No 140
>PRK14145 heat shock protein GrpE; Provisional
Probab=50.75 E-value=1.3e+02 Score=30.95 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 005989 227 ALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKI 269 (666)
Q Consensus 227 slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~ 269 (666)
.-+..|+.+|+.++.++.+|...-....-+++.+.|....|+.
T Consensus 45 ~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e 87 (196)
T PRK14145 45 DEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKS 87 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888888887777777788888887766665
No 141
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=50.59 E-value=4.1e+02 Score=29.82 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005989 227 ALVKALKMELDHSQTKIKELLQEKQT 252 (666)
Q Consensus 227 slv~aL~~EL~~Ar~~I~eL~~E~~s 252 (666)
+-+..|+..|..+++++..|.++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 97 NQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777776654
No 142
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=50.38 E-value=1.5e+02 Score=33.36 Aligned_cols=65 Identities=20% Similarity=0.334 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005989 231 ALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARD 310 (666)
Q Consensus 231 aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~E 310 (666)
-|+.+|-|+|. +...-....+.++-++.++.||+. ....-+++++.| .+..|.-+..|-+|
T Consensus 110 kL~nqL~~~~~----vf~k~k~~~q~LE~li~~~~EEn~--------~lqlqL~~l~~e-------~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 110 KLKNQLFHVRE----VFMKTKGDIQHLEGLIRHLREENQ--------CLQLQLDALQQE-------CGEKEEESQTLNRE 170 (401)
T ss_pred HHHHHHHHHHH----HHHHhcchHHHHHHHHHHHHHHHH--------HHHHhHHHHHHH-------HhHhHHHHHHHHHH
Confidence 35555555554 334444555668888888888775 233344444332 33344456666677
Q ss_pred HHHh
Q 005989 311 LSDM 314 (666)
Q Consensus 311 Lae~ 314 (666)
|+|+
T Consensus 171 LaE~ 174 (401)
T PF06785_consen 171 LAEA 174 (401)
T ss_pred HHHH
Confidence 7775
No 143
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=50.25 E-value=2.9e+02 Score=30.51 Aligned_cols=189 Identities=17% Similarity=0.167 Sum_probs=94.5
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH---HHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 005989 218 LEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVA---EEKIIRKDKERN---RIKAAVQSWKDELE 291 (666)
Q Consensus 218 leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqla---EeK~~wK~KE~e---ki~aai~slk~ELe 291 (666)
|.+++..=.-=+.+|..+|..+..+|.+|.+|-.. | +.|++-++ ||-..--+-.-. ........-.--|+
T Consensus 88 Ll~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~-k---deLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le 163 (306)
T PF04849_consen 88 LLEQNQDLSERNEALEEQLGAALEQVEQLRHELSM-K---DELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLE 163 (306)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHhcCcHhhhcccccCCCccccccccccccccchhHH
Confidence 55666554566788999999999999999998764 2 33444444 222111110000 00000000000112
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhhhc---hHHHHH
Q 005989 292 DERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDE--------------FAKGIRD---YEEEVR 354 (666)
Q Consensus 292 ~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdE--------------lAk~I~e---~kaEve 354 (666)
.=++-=|.+|.-|.+|-.|-+..+.....+ |.+.+.||.+.+.+ ||+...+ ...||.
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~------EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt 237 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTY------EEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEIT 237 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhc------cHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222446666777777776665544433 45566666654444 4443222 233333
Q ss_pred HHhcCcchh----hhhhhhhhhHHHHHhhhhhHHhhhhhHhhhhcccchhhHHHHHHHHHHHHHHhhcc
Q 005989 355 LLRHKPEMD----HAHMKNADRLILHISESWLDERMQMKIAETQNSLSDKNTILDKLRLDIENFLQAKH 419 (666)
Q Consensus 355 ~lk~es~k~----~~ee~eeER~mLq~AEvWrEERvQMKL~eAk~~leeK~s~~dkL~~elE~FL~sk~ 419 (666)
.|..+.+.. +-.-+|.|-.-.|+... --.|+.|..==..|.+||+.+-.|=.|-+.=|+.-+
T Consensus 238 ~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s---ke~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 238 SLLSQIVDLQQRCKQLAAENEELQQHLQAS---KESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333322111 01223333333333333 245666655555688899888877777776666543
No 144
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=50.14 E-value=5.1e+02 Score=32.14 Aligned_cols=40 Identities=10% Similarity=0.144 Sum_probs=22.3
Q ss_pred HhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005989 296 LRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILL 335 (666)
Q Consensus 296 ~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRell 335 (666)
.+++.+.-..|+--|+.|+-.-+..+---||.-.|...+|
T Consensus 488 ~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL 527 (861)
T PF15254_consen 488 NKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQIL 527 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHh
Confidence 4555566666666666666555555555555544444444
No 145
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=49.64 E-value=5.8e+02 Score=31.35 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=10.0
Q ss_pred hHHHHHHHH-Hhccccccc
Q 005989 205 STELLTVLN-RIWSLEEQH 222 (666)
Q Consensus 205 S~EllkVLn-rIw~leeq~ 222 (666)
..++..-++ .+|.+.++-
T Consensus 472 ~~~~~~~~~~el~~l~~~i 490 (908)
T COG0419 472 EKELLELYELELEELEEEL 490 (908)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 455555555 666655543
No 146
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=49.56 E-value=5e+02 Score=30.60 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=6.0
Q ss_pred hHHHHHHHHHhcc
Q 005989 205 STELLTVLNRIWS 217 (666)
Q Consensus 205 S~EllkVLnrIw~ 217 (666)
.+.|.+-|+.++.
T Consensus 184 ~~~L~~dl~~~~~ 196 (650)
T TIGR03185 184 IDRLAGDLTNVLR 196 (650)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 147
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=49.37 E-value=3.1e+02 Score=28.09 Aligned_cols=75 Identities=12% Similarity=0.245 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhchHHHHHHHhcC
Q 005989 285 SWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERER--KARILLENLCDEFAKGIRDYEEEVRLLRHK 359 (666)
Q Consensus 285 slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~Er--kaRellE~vCdElAk~I~e~kaEve~lk~e 359 (666)
.|...|+.=.+++..++.+-...-.+|.+++.-....+.+...+- ....+++++=.++.+-+.+-+.+++..|..
T Consensus 88 ~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~ 164 (204)
T PRK09174 88 RIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAK 164 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666666666677776666666555544332 223455555555566666666666655543
No 148
>PRK14156 heat shock protein GrpE; Provisional
Probab=49.33 E-value=1e+02 Score=31.24 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005989 231 ALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARD 310 (666)
Q Consensus 231 aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~E 310 (666)
++..+|+..+.++.+|...-.....+++.+.|+...|+...+ ...+.+++++
T Consensus 31 ~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~----------------------------~~a~~~~~~~ 82 (177)
T PRK14156 31 PEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQ----------------------------RYRSQDLAKA 82 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHH
Confidence 455666667777777655555555555555555544443221 2345677777
Q ss_pred HHHhhHHHHHHHH
Q 005989 311 LSDMKSSFSNILK 323 (666)
Q Consensus 311 Lae~K~s~~~~~k 323 (666)
|..+--.|.+|+.
T Consensus 83 LLpVlDnLerAl~ 95 (177)
T PRK14156 83 ILPSLDNLERALA 95 (177)
T ss_pred HhhHHhHHHHHHh
Confidence 7777777766653
No 149
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=48.90 E-value=2.4e+02 Score=26.79 Aligned_cols=71 Identities=20% Similarity=0.340 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 005989 227 ALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSES 302 (666)
Q Consensus 227 slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ 302 (666)
.=+.+|..+|+..-..+.+|.+++.. +...+..|-.+..+.-.+ -.-+.+-|.++...|+.|+-.+-.++.
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd~----L~~~l~~L~~q~~s~~qr-~~eLqaki~ea~~~le~eK~ak~~l~~ 86 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKDQ----LRNALQSLQAQNASRNQR-IAELQAKIDEARRNLEDEKQAKLELES 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHH----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788999999999999999766554 666666666666554333 344667777777777776655534443
No 150
>PRK14146 heat shock protein GrpE; Provisional
Probab=48.24 E-value=1.3e+02 Score=31.30 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 228 LVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERN 277 (666)
Q Consensus 228 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~e 277 (666)
-+..|+.+|+.++.++.+|...-....-+++.+.|+...|+...+.---+
T Consensus 55 ~~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e 104 (215)
T PRK14146 55 TETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVK 104 (215)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788889999999999988777777788888888887776644443333
No 151
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=48.02 E-value=7.1e+02 Score=31.91 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=12.4
Q ss_pred CCcccccccccccCccCCCChh
Q 005989 592 PETDLKEDSHVQSLFTSHGSPV 613 (666)
Q Consensus 592 ~~~~~~e~~~~~~~~~~~~SP~ 613 (666)
|-.++.++.+--++-.++..|-
T Consensus 617 ~p~n~~~aytldg~~~~~~g~~ 638 (1074)
T KOG0250|consen 617 PPANVTKAYTLDGRQIFAGGPN 638 (1074)
T ss_pred CCccceeeeccCccccccCCCC
Confidence 5555666655555555555564
No 152
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=47.49 E-value=2.4e+02 Score=35.62 Aligned_cols=10 Identities=20% Similarity=0.152 Sum_probs=5.4
Q ss_pred cCCCCCCCCC
Q 005989 582 SLSSEGDKVH 591 (666)
Q Consensus 582 ~Ls~e~~~~~ 591 (666)
+-+++++++|
T Consensus 833 ~~~~~~~~~~ 842 (1021)
T PTZ00266 833 IDGGEGGDER 842 (1021)
T ss_pred cCCCCCCccC
Confidence 3455566554
No 153
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=47.33 E-value=3.4e+02 Score=28.03 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHH
Q 005989 240 QTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFS 319 (666)
Q Consensus 240 r~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~ 319 (666)
.+.+..+....+. ....-.+.-+....|.- |...+.+-++.+..|++.=+.-.++++..-..+-.++++.+
T Consensus 20 a~~~~~~~~~~~~----~~~~~~~sQ~~id~~~~-e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~---- 90 (251)
T PF11932_consen 20 AATLDQAQQVQQQ----WVQAAQQSQKRIDQWDD-EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLE---- 90 (251)
T ss_pred hccHHHHHHHHHH----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4445555544443 23333333333333433 45555566666666666555555555555555555554433
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHhhhh
Q 005989 320 NILKELERERKA----RILLENLCDEFAKGIR 347 (666)
Q Consensus 320 ~~~kelE~Erka----RellE~vCdElAk~I~ 347 (666)
+.++.-... .-+|.+++++|-.-|.
T Consensus 91 ---~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 91 ---QQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333332322 3355566666655444
No 154
>PLN03188 kinesin-12 family protein; Provisional
Probab=47.18 E-value=7.9e+02 Score=32.18 Aligned_cols=35 Identities=29% Similarity=0.345 Sum_probs=26.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005989 221 QHVSDIALVKALKMELDHSQTKIKELLQEKQTERQ 255 (666)
Q Consensus 221 q~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ 255 (666)
-+.--|+|.--|++||+-.|..+.+|..|-.+.|+
T Consensus 1059 ~es~wislteelr~eles~r~l~Ekl~~EL~~eK~ 1093 (1320)
T PLN03188 1059 AESKWISLAEELRTELDASRALAEKQKHELDTEKR 1093 (1320)
T ss_pred HhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34556777788888888888888888887777665
No 155
>PRK14151 heat shock protein GrpE; Provisional
Probab=46.87 E-value=3.2e+02 Score=27.58 Aligned_cols=64 Identities=5% Similarity=0.079 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 226 IALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDE 289 (666)
Q Consensus 226 ~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~E 289 (666)
.+.+..|+.+++..+.++.+|...-.....+++.+.|+...|+...+.--.+++-..+-.+-+-
T Consensus 19 ~~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~Dn 82 (176)
T PRK14151 19 AAAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDS 82 (176)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 3557788888888888888887666666677777777776666644444433333333333333
No 156
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=46.27 E-value=2e+02 Score=34.96 Aligned_cols=89 Identities=24% Similarity=0.227 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEK--IIRKD-------KERNRIKAAVQSWKDELEDERKLRKC 299 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK--~~wK~-------KE~eki~aai~slk~ELe~ERk~Rrr 299 (666)
|..|+..+..-+..+.-|++|......-++.+-+...+=+ +.|=. +.-+.|.--+.....||+.++..|+|
T Consensus 526 i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~r 605 (698)
T KOG0978|consen 526 IGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKR 605 (698)
T ss_pred HHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555554554444443311 11111 22234555567788899999999999
Q ss_pred hHHHHHHHHHHHHHhhHH
Q 005989 300 SESLHRKLARDLSDMKSS 317 (666)
Q Consensus 300 ~E~ln~KL~~ELae~K~s 317 (666)
+|.=+.+|-+.|..++..
T Consensus 606 leEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 606 LEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999888776643
No 157
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=46.26 E-value=1.3e+02 Score=34.69 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Q 005989 304 HRKLARDLSDMKSSFSNILKELER 327 (666)
Q Consensus 304 n~KL~~ELae~K~s~~~~~kelE~ 327 (666)
|..+-+||..+..++.+|-++||-
T Consensus 304 ~e~~rkelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 304 NETSRKELEQLRVALEKAEKELEA 327 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444446777777777777666654
No 158
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=46.01 E-value=5.8e+02 Score=34.48 Aligned_cols=94 Identities=18% Similarity=0.253 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHH----HHhhhhH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q 005989 282 AVQSWKDELEDER----KLRKCSE---SLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVR 354 (666)
Q Consensus 282 ai~slk~ELe~ER----k~Rrr~E---~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve 354 (666)
.+..++.+|..+. +.+..-| ..|..+..+|..++..|.+|..+|..=++.+...+..|+++.+-+.+-+.-++
T Consensus 1026 ~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Le 1105 (1822)
T KOG4674|consen 1026 QIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALE 1105 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHH
Confidence 3455666666652 2222222 35677778888999999999999999999999999999999998877444443
Q ss_pred HHhcCcchhhhhhhhhhhHHHH
Q 005989 355 LLRHKPEMDHAHMKNADRLILH 376 (666)
Q Consensus 355 ~lk~es~k~~~ee~eeER~mLq 376 (666)
...-.+.+. ++.++..-..||
T Consensus 1106 qe~~~~~~~-~~~L~~qNslLh 1126 (1822)
T KOG4674|consen 1106 QEVNELKKR-IESLEKQNSLLH 1126 (1822)
T ss_pred HHHHHHHHH-HHHHHHHHHHHH
Confidence 333333332 355555444443
No 159
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=45.27 E-value=2.5e+02 Score=25.87 Aligned_cols=73 Identities=14% Similarity=0.249 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKER-NRIKAAVQSWKDELEDERKLRKCSE 301 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~-eki~aai~slk~ELe~ERk~Rrr~E 301 (666)
+..+..+..-.+.++..+..+....+..-..++..+-+.+...+.... .+....|..++.+|..+|+--+=+-
T Consensus 5 ~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~k 78 (106)
T PF05837_consen 5 ILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVMK 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555566665555555555555 7788889999999988877554433
No 160
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=44.86 E-value=3.4e+02 Score=27.29 Aligned_cols=67 Identities=33% Similarity=0.431 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 260 LMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENL 338 (666)
Q Consensus 260 l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~v 338 (666)
.+++--+||..-|..|.++ -.++|-+.|+++.+.-+.+-+.+..|.... --|+.+.-+|...|++.+
T Consensus 62 ai~~QieEk~r~k~~E~er------r~~EE~~EE~Rl~rere~~q~~~E~E~~~~------~~KEe~~~~k~~~l~e~~ 128 (157)
T PF15236_consen 62 AIKQQIEEKRRQKQEEEER------RRREEEEEEERLAREREELQRQFEEEQRKQ------REKEEEQTRKTQELYEAM 128 (157)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 3344446666555555553 345667777788888888888887777543 345666667777776644
No 161
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=44.81 E-value=6.1e+02 Score=30.25 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005989 228 LVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKII 270 (666)
Q Consensus 228 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~ 270 (666)
-+..|+.+|+..+.+|.++..+....+.++..+...+.+.+..
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~ 371 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAE 371 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777777666666666555555544443
No 162
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=44.74 E-value=2.8e+02 Score=26.34 Aligned_cols=102 Identities=18% Similarity=0.242 Sum_probs=57.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhH
Q 005989 225 DIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRK---CSE 301 (666)
Q Consensus 225 ~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rr---r~E 301 (666)
-|.+|..|-.--++-..+-..|....+....++++|-..+.-=+ +++...-+.+..-...++.+.+ .++
T Consensus 36 vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~--------~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 36 VINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLK--------EQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666666666666666553322 1222222222222223333332 345
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005989 302 SLHRKLARDLSDMKSSFSNILKELERERKARIL 334 (666)
Q Consensus 302 ~ln~KL~~ELae~K~s~~~~~kelE~ErkaRel 334 (666)
..++.+..|+.-++..+...-..|+-|-|.++.
T Consensus 108 ~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~ 140 (151)
T PF11559_consen 108 AKLKQEKEELQKLKNQLQQRKTQYEHELRKKER 140 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777777777777777766663
No 163
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=44.70 E-value=4.7e+02 Score=32.87 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=28.4
Q ss_pred hhHHHHHhhhhhHHhhhhhHhhhhcccchhhHHHHHHHHHHHHHHhhcc
Q 005989 371 DRLILHISESWLDERMQMKIAETQNSLSDKNTILDKLRLDIENFLQAKH 419 (666)
Q Consensus 371 ER~mLq~AEvWrEERvQMKL~eAk~~leeK~s~~dkL~~elE~FL~sk~ 419 (666)
|-+|=.+-+..-+.|-|.|+.+--+ |--.++.|+.||+.+=.--+
T Consensus 1065 eaemdeik~~~~edrakqkei~k~L----~ehelenLrnEieklndkIk 1109 (1424)
T KOG4572|consen 1065 EAEMDEIKDGKCEDRAKQKEIDKIL----KEHELENLRNEIEKLNDKIK 1109 (1424)
T ss_pred HhhhhhhhhhhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhh
Confidence 3455556666666777777765433 23457788999998755444
No 164
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=44.55 E-value=6.4e+02 Score=30.68 Aligned_cols=143 Identities=23% Similarity=0.342 Sum_probs=77.1
Q ss_pred ccchHHHHHHHHHhcc-ccccccccHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 005989 202 LKTSTELLTVLNRIWS-LEEQHVSDIALVKALK--------MELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRK 272 (666)
Q Consensus 202 L~tS~EllkVLnrIw~-leeq~~s~~slv~aL~--------~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK 272 (666)
..|-..++.-|+-||. ++|...--..++.-|+ .=+++|...-..|.++--..+.++..|+..+.+--..=.
T Consensus 13 ~~t~~~~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~ 92 (660)
T KOG4302|consen 13 EATCGNLLNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE 92 (660)
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 4556677778999998 5555444333333333 335677777777777777778888888877754332221
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHh------------------hHHHHHHHHH
Q 005989 273 ---------DKERNRIKAAVQSWKDELEDERKL-RKCSESLHRKLARDLSDM------------------KSSFSNILKE 324 (666)
Q Consensus 273 ---------~KE~eki~aai~slk~ELe~ERk~-Rrr~E~ln~KL~~ELae~------------------K~s~~~~~ke 324 (666)
.-+-.+|.-++..|+...+ ||+. =+-+-..-.+|..||+.- =-.|..-|++
T Consensus 93 ~~~k~e~tLke~l~~l~~~le~lr~qk~-eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~ 171 (660)
T KOG4302|consen 93 ISDKIEGTLKEQLESLKPYLEGLRKQKD-ERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNE 171 (660)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHH
Confidence 0112233333333333222 1111 111112223444444432 0236677888
Q ss_pred HHHHHHHH--------HHHHHHHHHHHhh
Q 005989 325 LERERKAR--------ILLENLCDEFAKG 345 (666)
Q Consensus 325 lE~ErkaR--------ellE~vCdElAk~ 345 (666)
|++|+..| +-|-.+|+.|--.
T Consensus 172 L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~ 200 (660)
T KOG4302|consen 172 LQKEKSDRLEKVLELKEEIKSLCSVLGLD 200 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88888776 3456678776543
No 165
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=44.41 E-value=4.3e+02 Score=30.57 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=24.8
Q ss_pred hhhhhhHHHHHhhhhhHHhhhhhHhhhhcccchhh
Q 005989 367 MKNADRLILHISESWLDERMQMKIAETQNSLSDKN 401 (666)
Q Consensus 367 e~eeER~mLq~AEvWrEERvQMKL~eAk~~leeK~ 401 (666)
-++.+-.|+-+-|.-|+=|.|-.|++|..+|.-|-
T Consensus 106 ~~e~~n~~~~l~~~~~~~r~~e~la~~~~~l~~~~ 140 (459)
T KOG0288|consen 106 KAEFENAELALREMRRKMRIAERLAEALKDLGLKD 140 (459)
T ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 45677777777777777777778888777665543
No 166
>PRK01156 chromosome segregation protein; Provisional
Probab=44.39 E-value=6.6e+02 Score=30.51 Aligned_cols=17 Identities=12% Similarity=0.307 Sum_probs=12.1
Q ss_pred chHHHHHHHHHhccccc
Q 005989 204 TSTELLTVLNRIWSLEE 220 (666)
Q Consensus 204 tS~EllkVLnrIw~lee 220 (666)
++.+..++|.+|-+++.
T Consensus 147 ~~~~r~~~ld~~~~~~~ 163 (895)
T PRK01156 147 DPAQRKKILDEILEINS 163 (895)
T ss_pred CHHHHHHHHHHHhChHH
Confidence 56777788888876553
No 167
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=44.29 E-value=4.4e+02 Score=28.47 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 005989 324 ELERERKARILLENLCDEFAKGIRDYEEEVRLL 356 (666)
Q Consensus 324 elE~ErkaRellE~vCdElAk~I~e~kaEve~l 356 (666)
+++.-+....-++.-.+++...+.+..+++..+
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444433
No 168
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=43.73 E-value=2e+02 Score=34.35 Aligned_cols=14 Identities=57% Similarity=0.679 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q 005989 323 KELERERKARILLE 336 (666)
Q Consensus 323 kelE~ErkaRellE 336 (666)
|-||+||-.|+.||
T Consensus 663 QrLERErmErERLE 676 (940)
T KOG4661|consen 663 QRLERERMERERLE 676 (940)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566665555554
No 169
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=43.64 E-value=6e+02 Score=29.75 Aligned_cols=64 Identities=25% Similarity=0.472 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005989 234 MELDHSQTKIKELLQEKQTERQEVNDL--MKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDL 311 (666)
Q Consensus 234 ~EL~~Ar~~I~eL~~E~~s~~~ei~~l--~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~EL 311 (666)
++|..-+.....+++|..+.+.+...+ .+++.|.|+ .+...-|..+..||.+|| -+|.+|.+.+
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~-------~q~q~k~~k~~kel~~~~-------E~n~~l~knq 412 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKL-------QQLQTKLKKCQKELKEER-------EENKKLIKNQ 412 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-------HHHHHHHhhH
Confidence 577777777777777777755554444 345556655 233455556777777776 4666666554
No 170
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=43.51 E-value=4.9e+02 Score=28.78 Aligned_cols=107 Identities=21% Similarity=0.398 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005989 227 ALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRK 306 (666)
Q Consensus 227 slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 306 (666)
.++-.++.+|.+|+.+|+|+++-.+..+..+...+-+- +-+...|--++.| =-=||++++.++.|
T Consensus 179 L~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kq------------es~eERL~QlqsE---N~LLrQQLddA~~K 243 (305)
T PF14915_consen 179 LALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQ------------ESLEERLSQLQSE---NMLLRQQLDDAHNK 243 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------------HHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34677888888899999998888887776666555432 2222222222211 13467888888877
Q ss_pred HH-HH--HHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhc
Q 005989 307 LA-RD--LSDMKSSFSNILKELERERKARIL-LENLCDEFAKGIRD 348 (666)
Q Consensus 307 L~-~E--Lae~K~s~~~~~kelE~ErkaRel-lE~vCdElAk~I~e 348 (666)
-- +| +.++.--|...++.|--|.....+ ||+=-.||..+...
T Consensus 244 ~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~ 289 (305)
T PF14915_consen 244 ADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNH 289 (305)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 63 45 777777788888887666655554 56655555554443
No 171
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.51 E-value=4.7e+02 Score=28.48 Aligned_cols=27 Identities=7% Similarity=0.156 Sum_probs=15.3
Q ss_pred HhhhhcccchhhHHHHHHHHHHHHHHh
Q 005989 390 IAETQNSLSDKNTILDKLRLDIENFLQ 416 (666)
Q Consensus 390 L~eAk~~leeK~s~~dkL~~elE~FL~ 416 (666)
|........|=|+++=.+.-=|.+...
T Consensus 161 l~~~~V~W~EINAA~Gq~~LLL~~la~ 187 (314)
T PF04111_consen 161 LPNVPVEWNEINAAWGQTALLLQTLAK 187 (314)
T ss_dssp BTTB---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 334455556668888777766666544
No 172
>PRK14147 heat shock protein GrpE; Provisional
Probab=43.42 E-value=1.5e+02 Score=29.67 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKI 269 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~ 269 (666)
+..|..+|+..+.++.+|...-....-+++.+.|++..|+.
T Consensus 20 ~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e 60 (172)
T PRK14147 20 TDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVE 60 (172)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577788888888888876666666777777777766655
No 173
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=43.13 E-value=3.6e+02 Score=33.31 Aligned_cols=78 Identities=26% Similarity=0.330 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH---------------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 276 RNRIKAAVQSWKDELEDERKLRKCSESLHRKLAR---------------DLSDMKSSFSNILKELERERKARILLENLCD 340 (666)
Q Consensus 276 ~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~---------------ELae~K~s~~~~~kelE~ErkaRellE~vCd 340 (666)
+--|.=|+|.|+.|-. .||||+-.||..|-. ||.-.++--.-.-+.|..-.|.-++|-..-+
T Consensus 382 q~EIALA~QplrsENa---qLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kne 458 (861)
T PF15254_consen 382 QVEIALAMQPLRSENA---QLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNE 458 (861)
T ss_pred hhhhHhhhhhhhhhhH---HHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 3346667788887765 588999999999954 3333333323333445555677888888888
Q ss_pred HHHhhhhchHHHHHHH
Q 005989 341 EFAKGIRDYEEEVRLL 356 (666)
Q Consensus 341 ElAk~I~e~kaEve~l 356 (666)
||-|-|..-+.|--.|
T Consensus 459 ellk~~e~q~~Enk~~ 474 (861)
T PF15254_consen 459 ELLKVIENQKEENKRL 474 (861)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888877666654433
No 174
>PRK14162 heat shock protein GrpE; Provisional
Probab=43.07 E-value=3.9e+02 Score=27.50 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 227 ALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDEL 290 (666)
Q Consensus 227 slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~EL 290 (666)
.-+..|+.+|...+.++.+|...-....-+++.+.|+...|+...+.--.+++-..+-.+-+-|
T Consensus 39 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnL 102 (194)
T PRK14162 39 NPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNL 102 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 4467788888888888888877777777778888877777766555444444444443443333
No 175
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=42.98 E-value=5.2e+02 Score=29.50 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=46.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHH---HHHHHH
Q 005989 247 LQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSS---FSNILK 323 (666)
Q Consensus 247 ~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s---~~~~~k 323 (666)
.+|..+...+++.++....++-..--..--+.|...+..+.+.=.-..-....+..+...++....--+.. |...+.
T Consensus 17 ~~e~~~i~~e~e~~i~~~~~~l~~~l~~~d~~i~~~~~~l~~d~~l~~~~~~~l~~~w~~v~~~~~~r~~~I~~l~~~L~ 96 (473)
T PF14643_consen 17 HEELASISEEVEPLILEAGEDLKQKLAESDEEIEEIFSKLEDDSALLEYSIQDLLELWDEVAEHSQKRKQWIKELDEDLE 96 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333445555555555554444555555555555555532222222 344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 005989 324 ELERERKARILLENLCDEFAKGIRD 348 (666)
Q Consensus 324 elE~ErkaRellE~vCdElAk~I~e 348 (666)
++|.+|.. -|..+|..++..+.+
T Consensus 97 ~~E~~R~~--~l~~~l~~~~~~L~~ 119 (473)
T PF14643_consen 97 ELEKERAD--KLKKVLRKYVEILEK 119 (473)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHH
Confidence 66666543 345555555555443
No 176
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=42.83 E-value=5.8e+02 Score=31.26 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 005989 289 ELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKAR 332 (666)
Q Consensus 289 ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaR 332 (666)
+-..|+|+++..+.--++.-+|=..-|---.++-|+.|+++++.
T Consensus 294 kekee~Klekd~KKqqkekEkeEKrrKdE~Ek~kKqeek~KR~k 337 (811)
T KOG4364|consen 294 KEKEETKLEKDIKKQQKEKEKEEKRRKDEQEKLKKQEEKQKRAK 337 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 33445566665555555555555555555555666667666655
No 177
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=42.43 E-value=8.5e+02 Score=31.18 Aligned_cols=176 Identities=20% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhh
Q 005989 233 KMELDHSQTKIKELLQEKQTERQEVNDLMKQVAE-EKIIRKDKERNRIKAAVQSW------------KDELEDERKLRKC 299 (666)
Q Consensus 233 ~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaE-eK~~wK~KE~eki~aai~sl------------k~ELe~ERk~Rrr 299 (666)
+.||.--|..-++|++-.......+.+|...+.. +|.+-+-+|+++++.-|+.| ..|....+..+.+
T Consensus 180 h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r 259 (1072)
T KOG0979|consen 180 HIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDR 259 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHh------hhhchHHHHHHHhcCcc
Q 005989 300 SESLHRKLARDLSDMKSSFSNILKELERERKA------------RILLENLCDEFAK------GIRDYEEEVRLLRHKPE 361 (666)
Q Consensus 300 ~E~ln~KL~~ELae~K~s~~~~~kelE~Erka------------RellE~vCdElAk------~I~e~kaEve~lk~es~ 361 (666)
+-.--++|.++... +..-.++||.|+.. ++...++|.-|-+ .+.+-+.+.+.+|.+..
T Consensus 260 ~k~~~r~l~k~~~p----i~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~ 335 (1072)
T KOG0979|consen 260 AKKELRKLEKEIKP----IEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAE 335 (1072)
T ss_pred HHHHHHHHHHhhhh----hhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhHHHHHhhhhhH-----HhhhhhHhhhhcc-cchhhHHHHHHHHHHHH
Q 005989 362 MDHAHMKNADRLILHISESWLD-----ERMQMKIAETQNS-LSDKNTILDKLRLDIEN 413 (666)
Q Consensus 362 k~~~ee~eeER~mLq~AEvWrE-----ERvQMKL~eAk~~-leeK~s~~dkL~~elE~ 413 (666)
+-+ ..++.-++|+-=|..=+- |+-|-++.++... ++.|.+.+-..+.++.+
T Consensus 336 ~rq-~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~ 392 (1072)
T KOG0979|consen 336 KRQ-KRIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDA 392 (1072)
T ss_pred HHH-HHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhhhhhH
No 178
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=42.32 E-value=2.4e+02 Score=24.73 Aligned_cols=67 Identities=19% Similarity=0.358 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHH
Q 005989 239 SQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSF 318 (666)
Q Consensus 239 Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~ 318 (666)
-|.+|+++..+....-+++..++++|..- ...+-.-+..-....||.+++..+-..|
T Consensus 31 lR~~i~~~~~~~~~l~k~~~~~l~~l~~~-----------------------~~~~~~~~~~k~~~~KL~~df~~~l~~f 87 (102)
T PF14523_consen 31 LREKIHQLIQKTNQLIKEISELLKKLNSL-----------------------SSDRSNDRQQKLQREKLSRDFKEALQEF 87 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------------------H----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666332 2233344445566778888888888778
Q ss_pred HHHHHHHHHH
Q 005989 319 SNILKELERE 328 (666)
Q Consensus 319 ~~~~kelE~E 328 (666)
.++.+.+..-
T Consensus 88 q~~q~~~~~~ 97 (102)
T PF14523_consen 88 QKAQRRYAEK 97 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776543
No 179
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=42.29 E-value=7.6e+02 Score=30.63 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhHHHHHhhhhhHHhhhhhHh
Q 005989 319 SNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQMKIA 391 (666)
Q Consensus 319 ~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~mLq~AEvWrEERvQMKL~ 391 (666)
....++++.=+|.=+-|+..=|.|...|.+...|+..|++ .. .+++-+|--.-.--.++||+|.+.
T Consensus 219 n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~--~~-----~~~~~~mrd~~~~~~e~~~~~~~~ 284 (916)
T KOG0249|consen 219 NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR--SS-----LEKEQELRDHLRTYAERRRETETT 284 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HH-----HhhhhhhcchhhhhHHHHHhhcch
Confidence 3344455555555555556667777888888888888874 11 223333434444455666666555
No 180
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=41.30 E-value=2e+02 Score=27.05 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHh
Q 005989 302 SLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLR 357 (666)
Q Consensus 302 ~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk 357 (666)
.+..+|-.+|+-...++.++--=++.-++.++--+.+..++-.+|...+.+++.||
T Consensus 46 ~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk 101 (139)
T PF05615_consen 46 FLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELK 101 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555554444444445555555555555555555555555444
No 181
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=41.29 E-value=1e+02 Score=25.96 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhchHHHHHHHhcC
Q 005989 282 AVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKA-RILLENLCDEFAKGIRDYEEEVRLLRHK 359 (666)
Q Consensus 282 ai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~Erka-RellE~vCdElAk~I~e~kaEve~lk~e 359 (666)
.|+.|..+|+.|.++|.=+|.+=+- |..-++. +.-++.-.++--..|.-++.+++.++..
T Consensus 2 ~i~~L~~~i~~E~ki~~Gae~m~~~------------------~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~ 62 (70)
T PF02185_consen 2 RIEELQKKIDKELKIKEGAENMLQA------------------YSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------------------HCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777777777766665332 2223333 4444445555555666666666666554
No 182
>PRK11637 AmiB activator; Provisional
Probab=40.89 E-value=5.5e+02 Score=28.58 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 005989 232 LKMELDHSQTKIKELLQEKQ 251 (666)
Q Consensus 232 L~~EL~~Ar~~I~eL~~E~~ 251 (666)
++.+|+..+.+|+++.++..
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVR 64 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 183
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=40.88 E-value=5.9e+02 Score=28.96 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=39.7
Q ss_pred HHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhchHHHHHHHhcC
Q 005989 295 KLRKCSESLHRKLARDLSDMKSSFSNILKELERE--RKARILLENLCDEFAKGIRDYEEEVRLLRHK 359 (666)
Q Consensus 295 k~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~E--rkaRellE~vCdElAk~I~e~kaEve~lk~e 359 (666)
+.+++++.+....-+.|++++.-....+.+...+ +...+++++.=.|..+-+..-+++++..++.
T Consensus 46 ~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~ 112 (445)
T PRK13428 46 TAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQ 112 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777776666777666666655554433 2334566666666666666666666655543
No 184
>PRK01156 chromosome segregation protein; Provisional
Probab=40.14 E-value=7.6e+02 Score=30.00 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVN 258 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~ 258 (666)
+.-+..+|..-...|.+|..+......+++
T Consensus 471 i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~ 500 (895)
T PRK01156 471 INHYNEKKSRLEEKIREIEIEVKDIDEKIV 500 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544444333
No 185
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=39.95 E-value=7.9e+02 Score=30.13 Aligned_cols=121 Identities=19% Similarity=0.254 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHH---HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhHHH
Q 005989 231 ALKMELDHSQTKIKELLQEKQTERQ--EVNDLMK---QVAEEKIIRKDKERN--RIKAAVQSWKDELEDERKLRKCSESL 303 (666)
Q Consensus 231 aL~~EL~~Ar~~I~eL~~E~~s~~~--ei~~l~k---qlaEeK~~wK~KE~e--ki~aai~slk~ELe~ERk~Rrr~E~l 303 (666)
.++.|++..+.++..+..+.++... ..+..++ ++++.+-.-+.++.. -+-+-++.+-...++ ++..
T Consensus 397 ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed-------~Qeq 469 (698)
T KOG0978|consen 397 KARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFED-------MQEQ 469 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 4666777777777777666666444 4455555 444444333333222 112223333333333 6778
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhc
Q 005989 304 HRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRH 358 (666)
Q Consensus 304 n~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~ 358 (666)
|.||.-||.+.--..-++|.+..+-...-.+|.+-=+.|...|-..++-+..+..
T Consensus 470 n~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~ 524 (698)
T KOG0978|consen 470 NQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLEL 524 (698)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777777777777766666666665555555555555555444433
No 186
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=39.78 E-value=8.8e+02 Score=30.64 Aligned_cols=89 Identities=13% Similarity=0.190 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 005989 233 KMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLS 312 (666)
Q Consensus 233 ~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELa 312 (666)
+..++.|+.-|.+++......++..+.+..++++=.. +|--+-.-...+...|+-++..--.++..|.-|..-|.
T Consensus 402 r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~-----~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le 476 (980)
T KOG0980|consen 402 RTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQ-----EHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLE 476 (980)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3334444444555554444444444444444333221 12222222334444555555555555556666665555
Q ss_pred HhhHHHHHHHHHHH
Q 005989 313 DMKSSFSNILKELE 326 (666)
Q Consensus 313 e~K~s~~~~~kelE 326 (666)
+++.+...+..-+|
T Consensus 477 ~~~~~~~~~~~K~e 490 (980)
T KOG0980|consen 477 ELQRAAGRAETKTE 490 (980)
T ss_pred HHHHHHHHHHHhhH
Confidence 55555444433333
No 187
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=39.25 E-value=2.8e+02 Score=32.93 Aligned_cols=37 Identities=27% Similarity=0.526 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 300 SESLHRKLARDLSDMKSSFSNILKELERERKARILLENL 338 (666)
Q Consensus 300 ~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~v 338 (666)
++.+=.+|.+||+.++.+.-+++ ++.|.+...+++.+
T Consensus 3 ad~~~~~L~~eL~~le~~ni~~l--~~s~~~v~~l~~~l 39 (701)
T PF09763_consen 3 ADAFEERLSKELSALEAANIHSL--LESEKQVNSLMEYL 39 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHH
Confidence 56777899999999999998887 44455566665554
No 188
>PRK14153 heat shock protein GrpE; Provisional
Probab=39.20 E-value=4.3e+02 Score=27.28 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKI 269 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~ 269 (666)
+.++..|++..+.++.+|...-....-+++.+.|....|+.
T Consensus 35 ~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e 75 (194)
T PRK14153 35 DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREME 75 (194)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777766666666667777776665554
No 189
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=38.75 E-value=3e+02 Score=26.36 Aligned_cols=25 Identities=48% Similarity=0.473 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 225 DIALVKALKMELDHSQTKIKELLQE 249 (666)
Q Consensus 225 ~~slv~aL~~EL~~Ar~~I~eL~~E 249 (666)
|-..|-||--||++++.+|.+|.++
T Consensus 65 nP~tvLALLDElE~~~~~i~~~~~~ 89 (139)
T PF13935_consen 65 NPATVLALLDELERAQQRIAELEQE 89 (139)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999887
No 190
>PRK14148 heat shock protein GrpE; Provisional
Probab=38.34 E-value=2.6e+02 Score=28.80 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005989 228 LVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKL 307 (666)
Q Consensus 228 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL 307 (666)
-+.+|..+|...+..+.+|...-....-+++.+.|+...|+...+ .-.+.++
T Consensus 41 e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~----------------------------~~a~~~~ 92 (195)
T PRK14148 41 QLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNAR----------------------------KFGIEKF 92 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHH
Confidence 355666666666666666655555555555555555544433211 2345677
Q ss_pred HHHHHHhhHHHHHHHH
Q 005989 308 ARDLSDMKSSFSNILK 323 (666)
Q Consensus 308 ~~ELae~K~s~~~~~k 323 (666)
+++|..+--.|.+|+.
T Consensus 93 ~~~LLpV~DnlerAl~ 108 (195)
T PRK14148 93 AKELLPVIDSIEQALK 108 (195)
T ss_pred HHHHhhHHhHHHHHHh
Confidence 7777777666666654
No 191
>PF09636 XkdW: XkdW protein; InterPro: IPR019094 This entry includes the phage SPbeta protein YorD, the function of which is not known, It also contains the protein XkdW (P54342 from SWISSPROT) from the Phage-like element PBSX in Bacillus subtilis. XkdW is approximately 100 residues long and contains two alpha helices and two beta strands, and is probably monomeric. XkdW is expressed in bacteria but is probably viral in origin. Its function is unknown. PBSX, a defective prophage of B. subtilis, is a chromosomally based element which encodes a non-infectious phage-like particle with bactericidal activity. PBSX is induced by agents which elicit the SOS response [].; PDB: 2HG7_A.
Probab=38.02 E-value=11 Score=35.58 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHH
Q 005989 282 AVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSN 320 (666)
Q Consensus 282 ai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~ 320 (666)
-++.+..+|..|+=.|+++|.+|.-|++||+.+|..+..
T Consensus 66 qle~L~qeLaqekl~rkqle~~~~~Lg~ela~~kLe~l~ 104 (108)
T PF09636_consen 66 QLELLGQELAQEKLARKQLEELINNLGNELANLKLELLS 104 (108)
T ss_dssp ---------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999999999999876543
No 192
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=37.47 E-value=6.6e+02 Score=28.49 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=35.9
Q ss_pred HhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhchHHHHHHHhc
Q 005989 296 LRKCSESLHRKLARDLSDMKSSFSNILKELER-------ERKARILLENLCDEFAKGIRDYEEEVRLLRH 358 (666)
Q Consensus 296 ~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~-------ErkaRellE~vCdElAk~I~e~kaEve~lk~ 358 (666)
--+++.+-|.||.++|-.+..-|.++--+... -+....-++---|++.++++|.++|...|-|
T Consensus 100 e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Lnr 169 (401)
T PF06785_consen 100 ESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNR 169 (401)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHH
Confidence 34567788999999999888887776333211 1111122333335555555555555555544
No 193
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=36.93 E-value=1.3e+02 Score=34.75 Aligned_cols=55 Identities=25% Similarity=0.365 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005989 233 KMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLAR 309 (666)
Q Consensus 233 ~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ 309 (666)
+.-|+.-|+||.||..=-...++ + |. ..|.-|+.+|+.|+++|-++|.--.||.+
T Consensus 568 k~s~delr~qi~el~~ive~lk~-------~------------~~---kel~kl~~dleeek~mr~~lemei~~lkk 622 (627)
T KOG4348|consen 568 KNSLDELRAQIIELLCIVEALKK-------D------------HG---KELEKLRKDLEEEKTMRSNLEMEIEKLKK 622 (627)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-------H------------HH---HHHHHHHHHHHHHHHHHhhhHhhHHHHHH
Confidence 44578889999998754332221 1 11 13445666777777777776654444433
No 194
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=36.83 E-value=82 Score=34.89 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=34.5
Q ss_pred HHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 209 LTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQE 249 (666)
Q Consensus 209 lkVLnrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E 249 (666)
+.+=|++..|..|---.|+||+.|+.||-.-+++...+..-
T Consensus 205 yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~ 245 (372)
T COG3524 205 YRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSV 245 (372)
T ss_pred HHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888999999999999999999999998888776553
No 195
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=36.71 E-value=5e+02 Score=26.92 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhH
Q 005989 331 ARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRL 373 (666)
Q Consensus 331 aRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~ 373 (666)
+..-.+.+|..|-.--.+++.++... ... +.++|+||.
T Consensus 190 ~e~~y~~~~~~l~~~~~~~~~~~~~~---~~~--~Q~~E~~rl 227 (239)
T cd07658 190 AENEYYTCCVRLERLRLEWESALRKG---LNQ--YESLEEERL 227 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHH
Confidence 33444555555544333344433321 111 355666653
No 196
>PRK14155 heat shock protein GrpE; Provisional
Probab=36.65 E-value=2.3e+02 Score=29.44 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005989 230 KALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLAR 309 (666)
Q Consensus 230 ~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ 309 (666)
..|..+|+..+.++.+|........-+++.+.|+...|+... ..-...++++
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~----------------------------~~~a~~~~~~ 67 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDA----------------------------RAYAIQKFAR 67 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHH
Confidence 456667777777777776655555666666666665544421 1234566777
Q ss_pred HHHHhhHHHHHHHHH
Q 005989 310 DLSDMKSSFSNILKE 324 (666)
Q Consensus 310 ELae~K~s~~~~~ke 324 (666)
+|..+--.|.+|+.-
T Consensus 68 ~LLpV~DnLerAl~~ 82 (208)
T PRK14155 68 DLLGAADNLGRATAA 82 (208)
T ss_pred HHhhHHhhHHHHHhc
Confidence 777776666666543
No 197
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=36.54 E-value=1.1e+03 Score=30.58 Aligned_cols=125 Identities=14% Similarity=0.176 Sum_probs=65.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 005989 221 QHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKL---- 296 (666)
Q Consensus 221 q~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~---- 296 (666)
..+.+-+..-.|++|+..-.+++..|++|..++.+-.+-+-.|... .+++.+...+.|+.+++.+..-|..
T Consensus 167 ~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl-----~~~~~~~l~~~~~~Lq~~in~kR~~~se~ 241 (1109)
T PRK10929 167 NTPLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSEL-----AKKRSQQLDAYLQALRNQLNSQRQREAER 241 (1109)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556678888898888999999999988866544433333311 1223344444444444444331110
Q ss_pred -hhhhH-----------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHh
Q 005989 297 -RKCSE-----------------SLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLR 357 (666)
Q Consensus 297 -Rrr~E-----------------~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk 357 (666)
-++++ ..|++|+.+|...-.-.... ......+++.-|.+.+-....++.+..|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l-------~~~~~~~~~~l~~~~q~~~~i~eQi~~l~ 313 (1109)
T PRK10929 242 ALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLI-------ASQQRQAASQTLQVRQALNTLREQSQWLG 313 (1109)
T ss_pred HHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 01111 34777777776543333332 33334444445555555555555555444
No 198
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=36.43 E-value=7.2e+02 Score=28.66 Aligned_cols=103 Identities=15% Similarity=0.206 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH-HH
Q 005989 227 ALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKD---------ELEDER-KL 296 (666)
Q Consensus 227 slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~---------ELe~ER-k~ 296 (666)
.-|+.|+.|+.....+|.+...+....+++|+++-+++.--.... ..++.++...|..+.- -+-.|. ..
T Consensus 66 ~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~-r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~ 144 (420)
T COG4942 66 KQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE-REQRRRLAEQLAALQRSGRNPPPALLVSPEDAQR 144 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCCCchhhcChhhhhH
Confidence 335555555555555555555555555555555544443222111 2333334333333332 111111 11
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 005989 297 RKCSESLHRKLARDLSDMKSSFSNILKELERERK 330 (666)
Q Consensus 297 Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~Erk 330 (666)
=.|+-.+...|..++.+..-++.+.+++|-..+.
T Consensus 145 ~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~ 178 (420)
T COG4942 145 SVRLAIYYGALNPARAERIDALKATLKQLAAVRA 178 (420)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455566666777777766666666666655544
No 199
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=36.14 E-value=92 Score=29.73 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 005989 303 LHRKLARDLSDMKSSFSNIL 322 (666)
Q Consensus 303 ln~KL~~ELae~K~s~~~~~ 322 (666)
...+++.+|-.+--.|..++
T Consensus 59 ~~~~~~~~ll~v~D~l~~a~ 78 (165)
T PF01025_consen 59 ALEKFLKDLLPVLDNLERAL 78 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666664
No 200
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=35.85 E-value=15 Score=43.32 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCc
Q 005989 304 HRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKP 360 (666)
Q Consensus 304 n~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es 360 (666)
+.-++.++++++.-+...-.++++---++.-++.-|.++-++|.+.+.++..|...+
T Consensus 234 ~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A 290 (713)
T PF05622_consen 234 SQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEA 290 (713)
T ss_dssp ---------------------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777766666666665444555566667766666666666665555443
No 201
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=35.53 E-value=3.5e+02 Score=31.73 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005989 256 EVNDLMKQVAEEKIIRK 272 (666)
Q Consensus 256 ei~~l~kqlaEeK~~wK 272 (666)
=-|.|-|||++|+-.++
T Consensus 543 lreslekql~~ErklR~ 559 (641)
T KOG3915|consen 543 LRESLEKQLAMERKLRA 559 (641)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34678899999876544
No 202
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=35.52 E-value=1.2e+02 Score=27.32 Aligned_cols=42 Identities=29% Similarity=0.345 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKII 270 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~ 270 (666)
|.-+..||++.++.|+.|++|--..+-.|-||---||-||.+
T Consensus 28 vgd~e~eLerCK~sirrLeqevnkERFrmiYLQTlLAkErks 69 (79)
T PF09036_consen 28 VGDIEQELERCKASIRRLEQEVNKERFRMIYLQTLLAKERKS 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 667899999999999999999988888888888888887764
No 203
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=35.50 E-value=3.2e+02 Score=31.02 Aligned_cols=41 Identities=22% Similarity=0.206 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchh
Q 005989 320 NILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMD 363 (666)
Q Consensus 320 ~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~ 363 (666)
-.+..|+.||-..+.||+.-+++. .-...|+..||++-.-+
T Consensus 248 ~~~~~LqEEr~R~erLEeqlNd~~---elHq~Ei~~LKqeLa~~ 288 (395)
T PF10267_consen 248 FILEALQEERYRYERLEEQLNDLT---ELHQNEIYNLKQELASM 288 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhH
Confidence 345667778888888988888884 44677888888764433
No 204
>PRK00106 hypothetical protein; Provisional
Probab=35.28 E-value=8.2e+02 Score=28.94 Aligned_cols=10 Identities=20% Similarity=0.707 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 005989 282 AVQSWKDELE 291 (666)
Q Consensus 282 ai~slk~ELe 291 (666)
-+...+.|++
T Consensus 80 Ei~~~R~ElE 89 (535)
T PRK00106 80 EARKYREEIE 89 (535)
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 205
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=35.26 E-value=6.6e+02 Score=27.88 Aligned_cols=148 Identities=24% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005989 227 ALVKALKMELDHSQTKIKELLQEKQTERQE-VNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHR 305 (666)
Q Consensus 227 slv~aL~~EL~~Ar~~I~eL~~E~~s~~~e-i~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~ 305 (666)
.|...|..-|.+-|..--+|+.--...+.- |+.|++++ +++.+.......+|+ ++|+.--.+-.
T Consensus 106 ~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i------------~~Le~e~~~~q~~le---~Lr~EKVdlEn 170 (310)
T PF09755_consen 106 FLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKI------------ERLEKEKSAKQEELE---RLRREKVDLEN 170 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------------HHHHHHHHHhHHHHH---HHHHHHHhHHH
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHhhhhchHHHHHHHhcCcchh
Q 005989 306 KLARDLSDMKSSFSNILKELERERKARILLENLC----------------------DEFAKGIRDYEEEVRLLRHKPEMD 363 (666)
Q Consensus 306 KL~~ELae~K~s~~~~~kelE~ErkaRellE~vC----------------------dElAk~I~e~kaEve~lk~es~k~ 363 (666)
.|-.|=--+=--+-+-|-.|+.|++ .|=+.+- +.+.--|.....||..|++.-...
T Consensus 171 ~LE~EQE~lvN~L~Kqm~~l~~eKr--~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~s 248 (310)
T PF09755_consen 171 TLEQEQEALVNRLWKQMDKLEAEKR--RLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAAS 248 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhHHHHHhhhhhHH--hhhhhHh
Q 005989 364 HAHMKNADRLILHISESWLDE--RMQMKIA 391 (666)
Q Consensus 364 ~~ee~eeER~mLq~AEvWrEE--RvQMKL~ 391 (666)
..+.......+++--...|+| |.||||.
T Consensus 249 q~e~~~k~~~~~~eek~ireEN~rLqr~L~ 278 (310)
T PF09755_consen 249 QQEHSEKMAQYLQEEKEIREENRRLQRKLQ 278 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 206
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=34.89 E-value=4.5e+02 Score=30.65 Aligned_cols=59 Identities=25% Similarity=0.359 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERK 295 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk 295 (666)
|..|-.++.+-|.++..|+++-+..+.|-+.|.++- ..-..+|..+|+..+.||..|+.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~--------~~id~~i~~av~~~~~~~~~~~~ 119 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKRE--------QSIDQQIQQAVQSETQELTKEIE 119 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHhhhHHHHHHHH
Confidence 466666777777888888888777777766664432 23456788888887777776653
No 207
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=34.77 E-value=1.8e+02 Score=25.48 Aligned_cols=59 Identities=20% Similarity=0.326 Sum_probs=39.5
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 220 EQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSW 286 (666)
Q Consensus 220 eq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~sl 286 (666)
.+=...|--|..|++|++.-+.....|..+...-+.+ ..++.+|..+|.. +|++.|.-|
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~e----n~~L~~e~~~~~~----rl~~LL~kl 69 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELKEENEELKEE----NEQLKQERNAWQE----RLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHH----HHHHHHHhh
Confidence 3334566778999999999888888888666554444 4455577777764 455555443
No 208
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=34.76 E-value=4.9e+02 Score=29.85 Aligned_cols=118 Identities=20% Similarity=0.239 Sum_probs=87.2
Q ss_pred hHHHHHHHHHhccccccc-cccHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005989 205 STELLTVLNRIWSLEEQH-VSDIALVKALKMELDHS--------QTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKE 275 (666)
Q Consensus 205 S~EllkVLnrIw~leeq~-~s~~slv~aL~~EL~~A--------r~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE 275 (666)
+....++|.=+.+|.+.+ +.+-|=+..+-.+|.+. ..+|.+|++++.....||+.+-.-.- -..=-..-
T Consensus 99 T~~a~~Al~~l~~L~~~~~~~TeSRl~tv~~~l~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~~l~aG~~--~~ld~~~~ 176 (478)
T PF11855_consen 99 TPAAEKALRFLERLEERRFVGTESRLNTVFDALRQLAEGTDPDPERRIAELEREIAEIDAEIDRLEAGDV--PVLDDTQA 176 (478)
T ss_pred CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCHHHH
Confidence 346778888888998876 57778888888888875 46899999999999999988754310 11112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q 005989 276 RNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKE 324 (666)
Q Consensus 276 ~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~ke 324 (666)
.|++..+++-+.+=+.|=|+.+-..+.+|+.|-..+.+-..+-...|.+
T Consensus 177 ~er~~~i~~la~~L~~DFr~V~~~~r~l~r~lr~~i~~~~~~~G~vL~~ 225 (478)
T PF11855_consen 177 RERARQILQLARELPADFRRVEDNFRELDRALRERIIDWDGSRGEVLDE 225 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 6888888888888888999999999999999988877754444333333
No 209
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=34.58 E-value=3.6e+02 Score=24.58 Aligned_cols=50 Identities=30% Similarity=0.437 Sum_probs=25.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 290 LEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLC 339 (666)
Q Consensus 290 Le~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vC 339 (666)
.+.|++.+...+.-=.+|..+|..+++-..+.-..++.=..=...|+.|.
T Consensus 69 a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~ 118 (126)
T PF13863_consen 69 AEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVV 118 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555555555555555555555555555555444444444444
No 210
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=34.38 E-value=1.1e+03 Score=29.93 Aligned_cols=30 Identities=23% Similarity=0.484 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 263 QVAEEKIIRKDKERNRIKAAVQSWKDELED 292 (666)
Q Consensus 263 qlaEeK~~wK~KE~eki~aai~slk~ELe~ 292 (666)
++.+++..|-..|+.+|.+++..-..-+.+
T Consensus 715 ~~~~d~e~~e~~Ek~Ri~~~~ae~e~~vk~ 744 (988)
T KOG2072|consen 715 RQEEDRELYEAREKQRIEAAIAERESAVKD 744 (988)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888777554444433
No 211
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=34.12 E-value=2.6e+02 Score=25.96 Aligned_cols=63 Identities=27% Similarity=0.380 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 005989 235 ELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDM 314 (666)
Q Consensus 235 EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~ 314 (666)
+|...+.+..++++++.....||+.|-..|-+|-- .+| ..+|+-|-.+|.-|..|.++|.|+
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN-----------~MV-------a~ar~e~~~~e~k~~~le~~l~e~ 63 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEAN-----------KMV-------ADARRERAALEEKNEQLEKQLKEK 63 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH-------HHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888899999999999999988876643 222 468888888888888888888775
Q ss_pred h
Q 005989 315 K 315 (666)
Q Consensus 315 K 315 (666)
.
T Consensus 64 ~ 64 (100)
T PF06428_consen 64 E 64 (100)
T ss_dssp C
T ss_pred H
Confidence 4
No 212
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=34.09 E-value=2.7e+02 Score=32.05 Aligned_cols=84 Identities=30% Similarity=0.380 Sum_probs=55.3
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 216 WSLEEQHVSDIALVKALKMELDHSQTKIKELLQEK---QTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELED 292 (666)
Q Consensus 216 w~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~---~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ 292 (666)
|=|-|.-++++|.|-|++. ++-.|+.+|- ++-...++-|.+|.-+| |++|+.||++
T Consensus 374 rLLAEETAATiSAIEAMKn------AhrEEmeRELeKsqSvnsdveaLRrQylee---------------lqsvqRELeV 432 (593)
T KOG4807|consen 374 RLLAEETAATISAIEAMKN------AHREEMERELEKSQSVNSDVEALRRQYLEE---------------LQSVQRELEV 432 (593)
T ss_pred hhhhhhhhhhhHHHHHHHH------HHHHHHHHHHHhhhccccChHHHHHHHHHH---------------HHHHHHHHHH
Confidence 5577888999999999875 2223333332 25556788888888665 5577777775
Q ss_pred --HHHHhhhhHHHHHHHHHHHHHhhHHHHHHH
Q 005989 293 --ERKLRKCSESLHRKLARDLSDMKSSFSNIL 322 (666)
Q Consensus 293 --ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~ 322 (666)
|.=.-+.+|.. -|+..|.+-.-++.+|-
T Consensus 433 LSEQYSQKCLEna--hLaqalEaerqaLRqCQ 462 (593)
T KOG4807|consen 433 LSEQYSQKCLENA--HLAQALEAERQALRQCQ 462 (593)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 66677777744 46666666555555553
No 213
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=33.98 E-value=3.8e+02 Score=27.58 Aligned_cols=69 Identities=22% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH------HHHHHHHH
Q 005989 274 KERNRIKAAVQSWKDELEDERKLRKC--------SESLHRKLARDLSDMKSSFSNILKELERERKA------RILLENLC 339 (666)
Q Consensus 274 KE~eki~aai~slk~ELe~ERk~Rrr--------~E~ln~KL~~ELae~K~s~~~~~kelE~Erka------RellE~vC 339 (666)
++-.+.+|.|..++..|++.|+-=++ .|.-=..|...+.++-..+..-++++|..+|. +.+++++|
T Consensus 42 k~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~~k~~~i~~~~~~~~ 121 (215)
T PF07083_consen 42 KDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELIAPIDEASDKIDEQIKEFEEKEKEEKREKIKEYFEEMA 121 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 005989 340 DEF 342 (666)
Q Consensus 340 dEl 342 (666)
.++
T Consensus 122 ~~~ 124 (215)
T PF07083_consen 122 EEY 124 (215)
T ss_pred HHc
No 214
>PRK10884 SH3 domain-containing protein; Provisional
Probab=33.69 E-value=5.6e+02 Score=26.51 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 005989 300 SESLHRKLARDLSDMKSSFSNILKELE 326 (666)
Q Consensus 300 ~E~ln~KL~~ELae~K~s~~~~~kelE 326 (666)
++.-|.+|..||..++.-+..+-.+++
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777666555544433333
No 215
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=33.38 E-value=6.9e+02 Score=27.51 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=15.4
Q ss_pred HhhhhHHHHHHHHHHHHHHH
Q 005989 250 KQTERQEVNDLMKQVAEEKI 269 (666)
Q Consensus 250 ~~s~~~ei~~l~kqlaEeK~ 269 (666)
+.....++.+|+++|.+.|.
T Consensus 18 r~~~~~e~~~l~~~f~elke 37 (291)
T KOG4466|consen 18 RANEESEMSNLEKQFSELKE 37 (291)
T ss_pred hhhhhhhhhhhhhhhhHHHH
Confidence 34455688999999998886
No 216
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=33.02 E-value=8.7e+02 Score=28.59 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=46.3
Q ss_pred ccccccCCCCCCCCccccccccCCCCCcccchHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005989 174 MEVAAYNPAVTPTSSLDSRGKLGKPRYNLKTSTELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTE 253 (666)
Q Consensus 174 me~~~~~p~~tp~~s~~~k~r~~e~~~~L~tS~EllkVLnrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~ 253 (666)
|.+-.|..++.|..|-+ |-|++++..-|++-.|-++++ |..-.|+.+|..|++-++ .++..+
T Consensus 168 ~q~~d~~e~~~~kdSQl-kvrlqe~~~ll~~Rve~le~~--------------Sal~~lq~~L~la~~~~~---~~~e~~ 229 (554)
T KOG4677|consen 168 EQYRDYSEDWSPKDSQL-KVRLQEVRRLLKGRVESLERF--------------SALRSLQDKLQLAEEAVS---MHDENV 229 (554)
T ss_pred hhHhhHhhhcccchhhH-HHHHHHHHHHHHhhhHHHHHH--------------HHHHHHHHHHHHHHHHHH---hhhhhH
Confidence 33444555666766633 677888888888888888777 356778888888887664 233444
Q ss_pred hHHHHHHHHHH
Q 005989 254 RQEVNDLMKQV 264 (666)
Q Consensus 254 ~~ei~~l~kql 264 (666)
.....-|.+++
T Consensus 230 i~~~~~f~~r~ 240 (554)
T KOG4677|consen 230 ITAVLIFLKRT 240 (554)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 217
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=32.86 E-value=5.3e+02 Score=26.07 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=6.5
Q ss_pred cccchHHHHHHH
Q 005989 201 NLKTSTELLTVL 212 (666)
Q Consensus 201 ~L~tS~EllkVL 212 (666)
...+-+|+|..|
T Consensus 28 ~~~~VKdvlq~L 39 (188)
T PF03962_consen 28 VSMSVKDVLQSL 39 (188)
T ss_pred chhhHHHHHHHH
Confidence 334556666554
No 218
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=32.82 E-value=6.2e+02 Score=26.81 Aligned_cols=43 Identities=9% Similarity=0.132 Sum_probs=22.4
Q ss_pred HhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 005989 296 LRKCSESLHRKLARDLSDMKSSFSNILKELERERKA-RILLENLCDEF 342 (666)
Q Consensus 296 ~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~Erka-RellE~vCdEl 342 (666)
.++.+|.++.|+.+ ++.....+|+.|...+.. -+-|..+|+.|
T Consensus 155 t~k~leK~~~k~~k----a~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~ 198 (269)
T cd07673 155 TQREIEKAAVKSKK----ATESYKLYVEKYALAKADFEQKMTETAQKF 198 (269)
T ss_pred CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777766655 344455555555544331 12344455544
No 219
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=32.77 E-value=5.4e+02 Score=27.00 Aligned_cols=81 Identities=19% Similarity=0.305 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q 005989 275 ERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVR 354 (666)
Q Consensus 275 E~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve 354 (666)
+-+.+...++.++...+.-..+|..+..+-..++.++.........+-+.+.+.-+ .+...|-.++....+.-.+|.
T Consensus 69 ~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~---~l~~~~~k~~~~l~~l~~~v~ 145 (256)
T PF14932_consen 69 DLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQK---ELSAECSKLNNELNQLLGEVS 145 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777776666667777777666666666666666655555555544333 366777777777666665555
Q ss_pred HHhc
Q 005989 355 LLRH 358 (666)
Q Consensus 355 ~lk~ 358 (666)
.+-.
T Consensus 146 ~l~~ 149 (256)
T PF14932_consen 146 KLAS 149 (256)
T ss_pred HHHH
Confidence 4443
No 220
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=32.41 E-value=8.5e+02 Score=28.27 Aligned_cols=63 Identities=19% Similarity=0.155 Sum_probs=41.4
Q ss_pred CcccchHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 005989 200 YNLKTSTELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAE 266 (666)
Q Consensus 200 ~~L~tS~EllkVLnrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaE 266 (666)
.+|-....-+..|..+-++.+ -..-+..+..++..++..++++..+.....++++.+.-++.|
T Consensus 138 ~~l~~~~~~~~lLD~~~~~~~----~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~E 200 (563)
T TIGR00634 138 QLLFRPDEQRQLLDTFAGANE----KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEE 200 (563)
T ss_pred HHhcCHHHHHHHHHHhcCchH----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 355667777777777765321 223355556777777777777777777777777777766654
No 221
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.29 E-value=9e+02 Score=29.10 Aligned_cols=165 Identities=21% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------------HHHHHHHHHHHHHHHHHHHHHH
Q 005989 213 NRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTER----------------QEVNDLMKQVAEEKIIRKDKER 276 (666)
Q Consensus 213 nrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~----------------~ei~~l~kqlaEeK~~wK~KE~ 276 (666)
|+.-+.++|+.+ ..+.+|.+||---|++++.|.....+.. ++--.||+.--.+-..+=--..
T Consensus 186 ~~l~segNq~gs--m~argl~~ELR~qr~rnq~Le~~ssS~~g~~~~~~~~~ae~~~~~~e~~llr~t~~~~e~riEtqk 263 (654)
T KOG4809|consen 186 NALHSEGNQPGS--MNARGLSAELRNQRARNQPLEINSSSAKGLGYTCLGRLAELLTTKEEQFLLRSTDPSGEQRIETQK 263 (654)
T ss_pred HHhhccCCchhh--HHHHHHHHHHHHHHhhcchhhhhhhcccCCCchHHHHHHHhhhHHHHHHHHHhcCchHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH--------------------------------HHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q 005989 277 NRIKAAVQSWKDELE--------------------------------DERKLRKCSESLHRKLARDLSDMKSSFSNILKE 324 (666)
Q Consensus 277 eki~aai~slk~ELe--------------------------------~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~ke 324 (666)
..|-|-=.+|+.=|| +||+.++=.|-=
T Consensus 264 qtl~ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~h~r~~~er~IerLkeqr--------------------- 322 (654)
T KOG4809|consen 264 QTLDARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMAHMRMKVERIIERLKEQR--------------------- 322 (654)
T ss_pred hhhhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHHhhhchHHHHHHHhcchh---------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhHHHHHhh-----hhhHHhhhhhHhhhhcccch
Q 005989 325 LERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISE-----SWLDERMQMKIAETQNSLSD 399 (666)
Q Consensus 325 lE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~mLq~AE-----vWrEERvQMKL~eAk~~lee 399 (666)
+|+.|+.+|+ |..|+.|.-.||..-..+++++-|.|-..+-+-| .=--+-.|-+|.+-..+||.
T Consensus 323 ---~rderE~~Ee--------Ie~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEq 391 (654)
T KOG4809|consen 323 ---ERDERERLEE--------IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQ 391 (654)
T ss_pred ---hhhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q ss_pred hhHHHHHHHHHH
Q 005989 400 KNTILDKLRLDI 411 (666)
Q Consensus 400 K~s~~dkL~~el 411 (666)
|+...-++..+|
T Consensus 392 kkEec~kme~qL 403 (654)
T KOG4809|consen 392 KKEECSKMEAQL 403 (654)
T ss_pred HHHHHHHHHHHH
No 222
>PRK10698 phage shock protein PspA; Provisional
Probab=32.25 E-value=4.5e+02 Score=27.18 Aligned_cols=93 Identities=17% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hh
Q 005989 279 IKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKG-----------IR 347 (666)
Q Consensus 279 i~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~-----------I~ 347 (666)
|.-.|+.|.+.|..=|+.--+.=...++|.+++.+....+.+. +++|+..|..==++||+. |.
T Consensus 29 l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~------e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~ 102 (222)
T PRK10698 29 VRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEW------QEKAELALRKEKEDLARAALIEKQKLTDLIA 102 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_pred chHHHHHHHhcCcchhhhhhhhhhhHHHHHhhhhhHHhhhhhHhhhhcccchhhHHHHHHHHHHHHH
Q 005989 348 DYEEEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQMKIAETQNSLSDKNTILDKLRLDIENF 414 (666)
Q Consensus 348 e~kaEve~lk~es~k~~~ee~eeER~mLq~AEvWrEERvQMKL~eAk~~leeK~s~~dkL~~elE~F 414 (666)
.++.+++.......+. ...+.+|...|+.+
T Consensus 103 ~l~~~~~~~~~~~~~L-------------------------------------~~~l~~L~~ki~ea 132 (222)
T PRK10698 103 TLEHEVTLVDETLARM-------------------------------------KKEIGELENKLSET 132 (222)
T ss_pred HHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHHHHHHH
No 223
>PRK14161 heat shock protein GrpE; Provisional
Probab=31.99 E-value=3.6e+02 Score=27.31 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q 005989 302 SLHRKLARDLSDMKSSFSNILK 323 (666)
Q Consensus 302 ~ln~KL~~ELae~K~s~~~~~k 323 (666)
....+++++|-.+--.|.+|+.
T Consensus 66 ~a~~~~~~~LLpv~DnlerAl~ 87 (178)
T PRK14161 66 YAIATFAKELLNVSDNLSRALA 87 (178)
T ss_pred HHHHHHHHHHhhHHhHHHHHHh
Confidence 4566788888877766666654
No 224
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=31.94 E-value=5.3e+02 Score=25.75 Aligned_cols=88 Identities=20% Similarity=0.241 Sum_probs=48.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 005989 223 VSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSES 302 (666)
Q Consensus 223 ~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ 302 (666)
.....-+..|..++..-..+|.+|..+....+.++..|--.|.+ |.|-.+.+...+.++.-++..=-.-.++++.
T Consensus 98 ~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~e-----k~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 98 VELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKE-----KNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567788888888888888888888888777777665543 4445666666667776666554444556777
Q ss_pred HHHHHHHHHHHhh
Q 005989 303 LHRKLARDLSDMK 315 (666)
Q Consensus 303 ln~KL~~ELae~K 315 (666)
=|..|+.-+-+-|
T Consensus 173 En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 173 ENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777776655433
No 225
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=31.80 E-value=2.5e+02 Score=24.40 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=9.4
Q ss_pred hhchHHHHHHHhcC
Q 005989 346 IRDYEEEVRLLRHK 359 (666)
Q Consensus 346 I~e~kaEve~lk~e 359 (666)
|.+.++|++.|+++
T Consensus 49 ~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 49 NNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHH
Confidence 56667777777654
No 226
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=31.49 E-value=40 Score=30.73 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 005989 254 RQEVNDLMKQVAEEKI 269 (666)
Q Consensus 254 ~~ei~~l~kqlaEeK~ 269 (666)
..+||.|+..|+.+-.
T Consensus 20 ~~eVD~fl~~l~~~~~ 35 (131)
T PF05103_consen 20 PDEVDDFLDELAEELE 35 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4577777777766554
No 227
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=31.49 E-value=7.3e+02 Score=27.19 Aligned_cols=70 Identities=19% Similarity=0.268 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchH
Q 005989 278 RIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYE 350 (666)
Q Consensus 278 ki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~k 350 (666)
.+..-.+.|+.|+... ++..+-++.-=..||..+|..+.....+++.-++.-.-++.--.++-..|.+..
T Consensus 176 ~l~~~~~~L~~e~~~L---~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~ 245 (312)
T smart00787 176 KLRDRKDALEEELRQL---KQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLT 245 (312)
T ss_pred HHHHHHHHHHHHHHHH---HHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555553 344444444445566666666666666666655554443333333333344333
No 228
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=31.48 E-value=5.3e+02 Score=25.65 Aligned_cols=94 Identities=13% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhh
Q 005989 268 KIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKAR--ILLENLCDEFAKG 345 (666)
Q Consensus 268 K~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaR--ellE~vCdElAk~ 345 (666)
|..|+ +-..-|...=..+.+.|+.=.+.+..++.+-...-..|.+++.-....+.+...+-... +++++.=.|.++.
T Consensus 50 k~l~~-PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~ 128 (181)
T PRK13454 50 RVALP-RIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAK 128 (181)
T ss_pred HHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhchHHHHHHHhcCcch
Q 005989 346 IRDYEEEVRLLRHKPEM 362 (666)
Q Consensus 346 I~e~kaEve~lk~es~k 362 (666)
+.+-+++++..+....+
T Consensus 129 ~aea~~~I~~~k~~a~~ 145 (181)
T PRK13454 129 AAESEKRIAEIRAGALE 145 (181)
T ss_pred HHHHHHHHHHHHHHHHH
No 229
>PRK14160 heat shock protein GrpE; Provisional
Probab=30.91 E-value=6.4e+02 Score=26.38 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 005989 230 KALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKD 273 (666)
Q Consensus 230 ~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~ 273 (666)
.+|+.+|......+.+|...-.....+.+.+.|..+.|+...+.
T Consensus 64 ~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~ 107 (211)
T PRK14160 64 NKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYS 107 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444555555555544443333
No 230
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.85 E-value=6.9e+02 Score=26.70 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005989 228 LVKALKMELDHSQTKIKELLQEKQTERQEVNDL 260 (666)
Q Consensus 228 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l 260 (666)
.+.+++.|+..++..+-.+..+....++++-.+
T Consensus 32 ~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~ 64 (239)
T COG1579 32 ALKKAKAELEALNKALEALEIELEDLENQVSQL 64 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666655555555554444443333
No 231
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=30.68 E-value=7.7e+02 Score=29.39 Aligned_cols=178 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCCcCCCCCCCCCCCCCCCCCcccccccccchhhhhccccccCCCCCCCCCCCCcccccc------------ccccCCCC
Q 005989 116 PNYVRHPPTCSPHPHPRQPESASGSRRHLSASLMKHHESVERNGHALQPVSPASYDNSME------------VAAYNPAV 183 (666)
Q Consensus 116 ~~~l~dp~~~~~~~~~dqp~s~~~~rr~~~~s~~q~~~~~~~~~~~lqp~spaS~~ssme------------~~~~~p~~ 183 (666)
++|...|-.+.++-.|-+|..... .-..+-.+.+-.+.+.|+|+.|+.|.--+- +...-|-.
T Consensus 457 p~~h~tP~~~~q~~~p~~ppk~~k------p~s~S~~~pNmKfa~pL~~saa~g~~~~~ss~~k~stk~n~t~s~~~~~~ 530 (661)
T KOG2070|consen 457 PSHHGTPHTTIQNWGPLEPPKTPK------PWSLSCLRPNMKFAPPLRPSAALGYKEDLSSRNKRSTKSNKTMSKLLPKR 530 (661)
T ss_pred CCCCCCCCCCccccCCCCCCCCCC------CcchhhcCCCcccCCCCCcchhhhcCCCCcccccccccCcccHhhcCccc
Q ss_pred CCCCccccccc-cCCCCCcccch---HHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhh------h
Q 005989 184 TPTSSLDSRGK-LGKPRYNLKTS---TELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQT------E 253 (666)
Q Consensus 184 tp~~s~~~k~r-~~e~~~~L~tS---~EllkVLnrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s------~ 253 (666)
+|-.--.--.+ ++-....+..- -+.||||..-+.=-..+.+..+--..-..=+-.--.--+-|+.|-++ .
T Consensus 531 ~~~~~ps~~~~~~r~~t~a~~~~eie~q~lkvle~YCt~~~~qqt~~~s~~~~~~p~~l~~e~eki~~ee~r~~~~~vle 610 (661)
T KOG2070|consen 531 KPERKPSDEEFASRKSTAALEEDEIEAQILKVLEAYCTSAKTQQTLNSSNRKYSQPQVLLPEEEKILMEETRSNGQSVLE 610 (661)
T ss_pred CCCCCCchhhhhhhccccccccccchhHHHHHHHHHhhcCCCcCCcccchhhcccceehhhhHHHHHHHhcccccceeec
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005989 254 RQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKL 307 (666)
Q Consensus 254 ~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL 307 (666)
.+.|-.-+.+|-++-. -++.-.+-|+.-||.|+|+|+++|.+=+|+
T Consensus 611 ekslvdtvyalkd~v~--------~lqqd~~kmkk~leeEqkaRrdLe~ll~k~ 656 (661)
T KOG2070|consen 611 EKSLVDTVYALKDEVS--------ELQQDNKKMKKVLEEEQKARRDLEKLLRKM 656 (661)
T ss_pred ccchhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 232
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=30.51 E-value=1.4e+02 Score=35.83 Aligned_cols=48 Identities=48% Similarity=0.588 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 240 QTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERK 295 (666)
Q Consensus 240 r~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk 295 (666)
|+++..|.+|++...+ .+..+..+-|.. ...|-++++.+||. ||||||
T Consensus 3 RdkL~~Lq~ek~~E~~---~l~~~~~~lk~~-~~~el~~Lk~~vqk----LEDEKK 50 (654)
T PF09798_consen 3 RDKLELLQQEKQKERQ---ALKSSVEELKES-HEEELNKLKSEVQK----LEDEKK 50 (654)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHH-hHHHHHHHHHHHHH----HHHHHH
Confidence 6778888888875444 444444333332 23355677777777 778887
No 233
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=30.16 E-value=1e+02 Score=29.50 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=10.7
Q ss_pred cCCCCCcccchHHHH
Q 005989 195 LGKPRYNLKTSTELL 209 (666)
Q Consensus 195 ~~e~~~~L~tS~Ell 209 (666)
+++.+.+|+..++++
T Consensus 52 lr~~G~sL~eI~~~l 66 (134)
T cd04779 52 LKGQRLSLAEIKDQL 66 (134)
T ss_pred HHHCCCCHHHHHHHH
Confidence 456677888777777
No 234
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=30.04 E-value=2.6e+02 Score=26.74 Aligned_cols=81 Identities=19% Similarity=0.297 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhHHHHHhhhh-----hHHhhhhhHhhhhcccchhhHHHHHH
Q 005989 333 ILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISESW-----LDERMQMKIAETQNSLSDKNTILDKL 407 (666)
Q Consensus 333 ellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~mLq~AEvW-----rEERvQMKL~eAk~~leeK~s~~dkL 407 (666)
.-|.+.|++|...|.+...=|..+-.-.... ...+|.|+ |--|+-.= -++| +-+.......+.||...|++|
T Consensus 23 ~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~-A~~VE~eK-lkAIG~RN~l~s~~k~R-~~~~q~lq~~I~Ek~~eLERl 99 (120)
T PF14931_consen 23 QELKEECKEFVEKISEFQKIVKGFIEILDEL-AKRVENEK-LKAIGARNLLKSEAKQR-EAQQQQLQALIAEKKMELERL 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHhHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888888777776666655444333 24444443 22222110 1111 122334556688999999999
Q ss_pred HHHHHHHHh
Q 005989 408 RLDIENFLQ 416 (666)
Q Consensus 408 ~~elE~FL~ 416 (666)
+.|.++...
T Consensus 100 ~~E~~sL~k 108 (120)
T PF14931_consen 100 RSEYESLQK 108 (120)
T ss_pred HHHHHHHHH
Confidence 999998754
No 235
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=29.64 E-value=4.2e+02 Score=23.91 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=30.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHH
Q 005989 306 KLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRL 355 (666)
Q Consensus 306 KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~ 355 (666)
.|..|+..+..-.++.-++|.+-...-.-||.+|.|+.+.+..-=..|+.
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~ 85 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRA 85 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444555555555677899999999887765555443
No 236
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=29.54 E-value=6.2e+02 Score=25.75 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcC
Q 005989 284 QSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHK 359 (666)
Q Consensus 284 ~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~e 359 (666)
..|+.=.++-++.|++.+....||.+++..+-..+.++.+.|+..-+.-+-...-.........-.+.+++.++..
T Consensus 94 ~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k 169 (251)
T cd07653 94 KELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKAN 169 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHH
Confidence 3344444455788888999999999999888888888888887766655555444433333222233455544443
No 237
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=29.50 E-value=6e+02 Score=25.61 Aligned_cols=82 Identities=21% Similarity=0.300 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 005989 254 RQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARI 333 (666)
Q Consensus 254 ~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRe 333 (666)
+.|.+.+.++|.+||+ ||.|.++.+..=-+.|.. .==.+|.||.-|-+|=..-..+|...---.-+|-....
T Consensus 2 keE~~~~~~~l~~Ek~-----eHaKTK~lLake~EKLqf---AlgeieiL~kQl~rek~afe~a~~~vk~k~~~Es~k~d 73 (153)
T PF15175_consen 2 KEEFEAVEKKLEEEKA-----EHAKTKALLAKESEKLQF---ALGEIEILSKQLEREKLAFEKALGSVKSKVLQESSKKD 73 (153)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHhhHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999998 788888776553333322 22346778887777755555555544444456666677
Q ss_pred HHHHHHHHHH
Q 005989 334 LLENLCDEFA 343 (666)
Q Consensus 334 llE~vCdElA 343 (666)
-|..=|++.-
T Consensus 74 qL~~KC~~~~ 83 (153)
T PF15175_consen 74 QLITKCNEIE 83 (153)
T ss_pred HHHHHHHHHH
Confidence 7777788773
No 238
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=29.37 E-value=5.7e+02 Score=34.88 Aligned_cols=183 Identities=19% Similarity=0.192 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----------HhhhhHH
Q 005989 234 MELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQS-WKDELEDERK----------LRKCSES 302 (666)
Q Consensus 234 ~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~s-lk~ELe~ERk----------~Rrr~E~ 302 (666)
.||+..+..|.+=.++-..+-..|+.|-++++.--..--.||++ ...+++- +.+.++.|+| +-.+.|.
T Consensus 2088 ~~l~~~~~~l~~g~~K~nE~~~g~~elke~Ls~~~~il~~keK~-a~d~L~~~~~er~e~E~K~v~~e~~~~~l~~~ee~ 2166 (3164)
T COG5245 2088 EELDCTNVNLVEGVRKYNEYGRGMGELKEQLSNTVVILGVKEKN-ADDALSGTPGERLEREVKSVFVEAPRDMLFLLEEE 2166 (3164)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHhcceeeeeecccc-cchhhhcChhhHHHHHHHHHHHHhHHHHHHHhHHH
Confidence 34555555555544444444455555555554332222222221 1111211 1222333332 2344455
Q ss_pred HHHHHH---HHHHHhhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhhhhchHHHHHHHhcCcc---
Q 005989 303 LHRKLA---RDLSDMKSSFSNILKELERERKA---------------RILLENLCDEFAKGIRDYEEEVRLLRHKPE--- 361 (666)
Q Consensus 303 ln~KL~---~ELae~K~s~~~~~kelE~Erka---------------RellE~vCdElAk~I~e~kaEve~lk~es~--- 361 (666)
+|+|++ ++.+.+|-++..|.+-.-+=+|| +..||.|||=|--+..+++-+-..||+.-.
T Consensus 2167 vrkrk~svmk~~s~~kPaVLEA~~~V~~ikka~L~EIrs~irpp~~l~i~me~Vc~LLgf~a~~w~~~qQ~LrrDDfi~~ 2246 (3164)
T COG5245 2167 VRKRKGSVMKFKSSKKPAVLEAVLFVYKIKKASLREIRSFIRPPGDLCIEMEDVCDLLGFEAKIWFGEQQSLRRDDFIRI 2246 (3164)
T ss_pred HHHHhhhhHhhhhccccHHHHHHHHHHHhhHHHHHHHHHhcCCcccceeeHHHHHHHhcchhHHhhhHHHHhhhhhHHHH
Confidence 555543 67777787777777766666665 345999998777666666666555553211
Q ss_pred -------------------------------------------hhhhhhhhhhhHHHHHhhhhhHHhhhhhHhhhhcccc
Q 005989 362 -------------------------------------------MDHAHMKNADRLILHISESWLDERMQMKIAETQNSLS 398 (666)
Q Consensus 362 -------------------------------------------k~~~ee~eeER~mLq~AEvWrEERvQMKL~eAk~~le 398 (666)
+.|+-..=-=+++|..-+..|+|=-..++. .+--|
T Consensus 2247 i~~y~~e~e~~~~~Rr~~E~~~~Sdp~ft~~~lnRaskacGPl~~Wl~~~cn~skvLE~~~plr~E~kRI~~E--~~~~e 2324 (3164)
T COG5245 2247 IGKYPDEIEFDLEARRFREARECSDPSFTGSILNRASKACGPLKRWLVRECNRSKVLEVKIPLREEEKRIDGE--AFLVE 2324 (3164)
T ss_pred hccCCceeecCHHHHHHHHHHhcCCCcchhHHhhhhhhccCcHHHHHHHHhhHHHhhhhcccchhHHHhhhhH--HhhHH
Confidence 111111111245666777778774333333 22235
Q ss_pred hhhHHHHHHHHHHHHHHhhcc
Q 005989 399 DKNTILDKLRLDIENFLQAKH 419 (666)
Q Consensus 399 eK~s~~dkL~~elE~FL~sk~ 419 (666)
+....-..|..+|++|+.-.+
T Consensus 2325 ~~L~~~~~~s~dl~~~~l~~r 2345 (3164)
T COG5245 2325 DRLTLGKGLSSDLMTFKLRRR 2345 (3164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556677789999999987765
No 239
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=29.36 E-value=6.5e+02 Score=26.00 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005989 237 DHSQTKIKELLQEKQTERQEVNDLMKQVA 265 (666)
Q Consensus 237 ~~Ar~~I~eL~~E~~s~~~ei~~l~kqla 265 (666)
.+++.+|.++..|++....+++.|.+++.
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e 66 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIE 66 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777777776666666666653
No 240
>PRK14144 heat shock protein GrpE; Provisional
Probab=29.36 E-value=4.3e+02 Score=27.44 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLA 308 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~ 308 (666)
+..|..+|+.....+.+|........-+.+.+.|....|+...+ .....+++
T Consensus 47 ~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~----------------------------~~a~~~~~ 98 (199)
T PRK14144 47 YTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAH----------------------------KYGVEKLI 98 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHH
Confidence 44555566555555555544444444445555444443333111 23456777
Q ss_pred HHHHHhhHHHHHHHH
Q 005989 309 RDLSDMKSSFSNILK 323 (666)
Q Consensus 309 ~ELae~K~s~~~~~k 323 (666)
++|..+--.|..|+.
T Consensus 99 ~~LLpV~DnLerAl~ 113 (199)
T PRK14144 99 SALLPVVDSLEQALQ 113 (199)
T ss_pred HHHhhHHhHHHHHHH
Confidence 777777766666654
No 241
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=29.26 E-value=6.7e+02 Score=31.95 Aligned_cols=6 Identities=17% Similarity=0.385 Sum_probs=2.5
Q ss_pred HHHhcc
Q 005989 212 LNRIWS 217 (666)
Q Consensus 212 LnrIw~ 217 (666)
++.-|+
T Consensus 422 ~~g~~g 427 (1021)
T PTZ00266 422 VNGHYG 427 (1021)
T ss_pred ccCccc
Confidence 344443
No 242
>PRK14163 heat shock protein GrpE; Provisional
Probab=29.15 E-value=7e+02 Score=26.23 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 230 KALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELE 291 (666)
Q Consensus 230 ~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe 291 (666)
..|+.+|+..+..+.+|...-....-+++.+.|++..|+..-+.--.+++-..|-.+-+.|+
T Consensus 43 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLe 104 (214)
T PRK14163 43 AGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVG 104 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Confidence 45777788888888888777777888888999988888876666666665555555555554
No 243
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.13 E-value=2.2e+02 Score=23.61 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005989 226 IALVKALKMELDHSQTKIKELLQEKQTERQEVNDL 260 (666)
Q Consensus 226 ~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l 260 (666)
+.-+..++.|+...+.+|.+|.++....+.+++.|
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466777777777778877777777777777666
No 244
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=29.10 E-value=5.7e+02 Score=25.19 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-hhhhHHHHHHH
Q 005989 253 ERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDEL-EDERKL-RKCSESLHRKL 307 (666)
Q Consensus 253 ~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~EL-e~ERk~-Rrr~E~ln~KL 307 (666)
-+-||.+|+|.|.+-+--+-.+--..+...+..+++.+ ..-..+ -.++..++.+|
T Consensus 19 IqgEI~~FvkEFE~KRgdRE~~~L~~~~~~~~e~~e~~lp~~~~~~~~~L~~l~~~l 75 (145)
T PF14942_consen 19 IQGEIRYFVKEFEEKRGDREVRVLENLTEMISETNEHILPRCIELMQQNLEQLLERL 75 (145)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 35688899999976666666666667777777777554 333322 33444444444
No 245
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=28.66 E-value=1.3e+03 Score=29.18 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005989 230 KALKMELDHSQTKIKELLQ 248 (666)
Q Consensus 230 ~aL~~EL~~Ar~~I~eL~~ 248 (666)
..+..+|...+..+.++..
T Consensus 619 ~~~~~~l~~~~~~~~~~~~ 637 (1047)
T PRK10246 619 HELQGQIAAHNQQIIQYQQ 637 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 246
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=28.63 E-value=1.7e+02 Score=31.41 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRK-DKERNRIK 280 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK-~KE~eki~ 280 (666)
+.-.+.|+.+....|+.|..|.+....-.+..+++|.++|..|- +...++|.
T Consensus 48 ~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~~wf~~~~~~~i~ 100 (298)
T PF11262_consen 48 ISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKDSWFSSKDPEKIE 100 (298)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCChhhHH
Confidence 45567789999999999999999999999999999999999998 44555555
No 247
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=28.56 E-value=9.4e+02 Score=27.55 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q 005989 258 NDLMKQVAEEKII--RKDKERNRIKAAVQ----SWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKEL 325 (666)
Q Consensus 258 ~~l~kqlaEeK~~--wK~KE~eki~aai~----slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kel 325 (666)
..|++.|.+|+.+ .-.+|-|-+.+.+. -|...||.|..-.++.|..-.||...|.+-|.-..+..--|
T Consensus 117 rKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mL 190 (561)
T KOG1103|consen 117 RKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLML 190 (561)
T ss_pred HHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777766543 23333344444432 34555666666677777777777766655544444433333
No 248
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=28.48 E-value=4.1e+02 Score=25.50 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 005989 331 ARILLENLCDEFAKGIRD 348 (666)
Q Consensus 331 aRellE~vCdElAk~I~e 348 (666)
.++..|.+|.++++-|.|
T Consensus 120 ~~~~~e~~~~~~~~riaE 137 (139)
T PF13935_consen 120 QAEAYEGEIADYAKRIAE 137 (139)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345566677777665544
No 249
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=28.09 E-value=5.1e+02 Score=24.32 Aligned_cols=88 Identities=25% Similarity=0.394 Sum_probs=60.5
Q ss_pred cccchHHHHHHHHHhcc--ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 201 NLKTSTELLTVLNRIWS--LEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNR 278 (666)
Q Consensus 201 ~L~tS~EllkVLnrIw~--leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~ek 278 (666)
+|+++=++. -|||=| --..+.++-+.|..|-.-|---+.++=.++++....+-..+.|-.+|+.=+-
T Consensus 6 ~l~~~v~if--~nRmksns~RGrsIanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~E~lQdkL~qi~e--------- 74 (96)
T PF12210_consen 6 TLRSSVEIF--VNRMKSNSSRGRSIANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYYEGLQDKLAQIKE--------- 74 (96)
T ss_dssp HHHHHHHHH--HHHHHHHHHTT--GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHH--HHHHHHhHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 344444433 466654 2233567778899999999888888888898888888888888888875544
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhH
Q 005989 279 IKAAVQSWKDELEDERKLRKCSE 301 (666)
Q Consensus 279 i~aai~slk~ELe~ERk~Rrr~E 301 (666)
.++|++.|++| ..+|+|+..|
T Consensus 75 AR~AlDalR~e--H~~klrr~aE 95 (96)
T PF12210_consen 75 ARAALDALREE--HREKLRRQAE 95 (96)
T ss_dssp HHHHHHHHHHH--HHHHHHHHH-
T ss_pred HHHHHHHHHHH--HHHHHHHHhc
Confidence 45789999976 5566666554
No 250
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.97 E-value=1e+03 Score=27.79 Aligned_cols=125 Identities=17% Similarity=0.281 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH----H
Q 005989 227 ALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDK----------ERNRIKAAVQSWKDELE----D 292 (666)
Q Consensus 227 slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~K----------E~eki~aai~slk~ELe----~ 292 (666)
-|+-.|..++-+|+..|+.-+++--..++.|.+-.++|-++.-.-..+ |-.-..++|..++.=+- +
T Consensus 345 ~ll~tlq~~iSqaq~~vq~qma~lv~a~e~i~~e~~rl~q~nd~l~~~~~l~t~~Qq~e~~~lp~ave~l~ql~~~~r~~ 424 (542)
T KOG0993|consen 345 DLLVTLQAEISQAQSEVQKQMARLVVASETIADEDSRLRQINDLLTTVGELETQVQQAEVQNLPAAVEQLAQLYKQRRTS 424 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhHhhhhcchhhHHHHHHHHHHHHHH
Confidence 356778889999999999888887777777777777776666544432 22233344433332211 1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhchHHHHHHHhc
Q 005989 293 ERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLEN-------LCDEFAKGIRDYEEEVRLLRH 358 (666)
Q Consensus 293 ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~-------vCdElAk~I~e~kaEve~lk~ 358 (666)
=+.-+.-+|-.-.+|.+|+--.+ ..||+|+-++.-||. -|.++---|...|.|.+.+++
T Consensus 425 ~~~~l~a~ehv~e~l~~ei~~L~-------eqle~e~~~~~~le~ql~~~ve~c~~~~aS~~slk~e~erl~q 490 (542)
T KOG0993|consen 425 LQQELDASEHVQEDLVKEIQSLQ-------EQLEKERQSEQELEWQLDDDVEQCSNCDASFASLKVEPERLHQ 490 (542)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 11223345556667776654322 357888988887774 466666667777777777764
No 251
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=27.86 E-value=1.5e+03 Score=29.64 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 005989 229 VKALKMELDHSQTKIKELLQEKQT 252 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s 252 (666)
|..|..++.....++..|.+|..+
T Consensus 758 i~~l~~~l~~l~~r~~~L~~e~~~ 781 (1353)
T TIGR02680 758 LAELARELRALGARQRALADELAG 781 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444443
No 252
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=27.61 E-value=1e+03 Score=27.56 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 258 NDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDE 293 (666)
Q Consensus 258 ~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~E 293 (666)
+.|-.++.+.+.+-+...-+-|.+.+..++.-|+.|
T Consensus 158 ~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e 193 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKE 193 (511)
T ss_pred hhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 677777777777777777777777777777666655
No 253
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=27.27 E-value=1.4e+03 Score=29.23 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=40.7
Q ss_pred hHHHHHHHhcCcchhhhhhhhhhhHHHHHhhhhhHHhhhhhHhhhhcccchhhHHHHHHHHHHHHHHhhc
Q 005989 349 YEEEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQMKIAETQNSLSDKNTILDKLRLDIENFLQAK 418 (666)
Q Consensus 349 ~kaEve~lk~es~k~~~ee~eeER~mLq~AEvWrEERvQMKL~eAk~~leeK~s~~dkL~~elE~FL~sk 418 (666)
||+|.+++++|-..-...+.=+||+=|-++-.=|.|+.+-+-.+...+|.+--- +|..|++......
T Consensus 1114 dK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e~~k---al~~e~~~~~e~~ 1180 (1189)
T KOG1265|consen 1114 DKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAEEEK---ALDAEAEQEYEEQ 1180 (1189)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH
Confidence 567777777775443356666777777777777777777766666665554322 2455555555443
No 254
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.22 E-value=7.1e+02 Score=25.73 Aligned_cols=8 Identities=25% Similarity=0.210 Sum_probs=3.9
Q ss_pred cccccccc
Q 005989 466 TDVDLQVL 473 (666)
Q Consensus 466 ~~sDlh~~ 473 (666)
+..|+..|
T Consensus 236 ~~~Di~~f 243 (261)
T cd07648 236 VDKLLRQF 243 (261)
T ss_pred HHHHHHHH
Confidence 33455555
No 255
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=26.99 E-value=8e+02 Score=27.16 Aligned_cols=88 Identities=18% Similarity=0.393 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLA 308 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~ 308 (666)
|.-|++-|-.+..++++ ..-||+.|..||+-=+.-|=--|..+|.|.+ +||+--..=+.|++=+|.+-.-|+
T Consensus 70 iRHLkakLkes~~~l~d-------RetEI~eLksQL~RMrEDWIEEECHRVEAQL-ALKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHD-------RETEIDELKSQLARMREDWIEEECHRVEAQL-ALKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 66677777666666655 3457999999999999999999999999876 344333333567777777765555
Q ss_pred HHHHHhhHHHHHHHHHHHHH
Q 005989 309 RDLSDMKSSFSNILKELERE 328 (666)
Q Consensus 309 ~ELae~K~s~~~~~kelE~E 328 (666)
|.-.-+.++..|+--.
T Consensus 142 ----ekDkGiQKYFvDINiQ 157 (305)
T PF15290_consen 142 ----EKDKGIQKYFVDINIQ 157 (305)
T ss_pred ----hhhhhHHHHHhhhhhh
Confidence 4455566666665543
No 256
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=26.91 E-value=1.2e+03 Score=28.30 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=31.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005989 224 SDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVA 265 (666)
Q Consensus 224 s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqla 265 (666)
.-++-+..|..+|.+.++.+.++..+....+.+.+.|-+++.
T Consensus 179 ~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~ 220 (670)
T KOG0239|consen 179 KLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG 220 (670)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 334567778888888888888888888887777777766655
No 257
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=26.65 E-value=4.3e+02 Score=23.00 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005989 226 IALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHR 305 (666)
Q Consensus 226 ~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~ 305 (666)
-+++..|.-.|+....+|++|.+-|..-...|+.+-..|.+-... +.+.+.+.-+. =...=..+|+++..+|.
T Consensus 6 ~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~------~~~~~~~~~~~-y~~KL~~ikkrm~~l~~ 78 (92)
T PF14712_consen 6 EGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEV------EQINEPFDLDP-YVKKLVNIKKRMSNLHE 78 (92)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhhhHHHhhH-HHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999998888888888777554431 22221211111 11122356888888888
Q ss_pred HHHH
Q 005989 306 KLAR 309 (666)
Q Consensus 306 KL~~ 309 (666)
++.+
T Consensus 79 ~l~~ 82 (92)
T PF14712_consen 79 RLQK 82 (92)
T ss_pred HHHH
Confidence 8764
No 258
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=26.36 E-value=1.2e+03 Score=28.70 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKER 276 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~ 276 (666)
+.-|++.+..|-..|..|..|-...+.+++.+-.+..+++..|++.-+
T Consensus 354 ~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q 401 (717)
T PF09730_consen 354 LEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQ 401 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455789999999999999999999998888888888888887776443
No 259
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=26.25 E-value=5e+02 Score=26.26 Aligned_cols=76 Identities=17% Similarity=0.365 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005989 233 KMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKD----KERNRIKAAVQSWKDELEDERKLRKCSESLHRKLA 308 (666)
Q Consensus 233 ~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~----KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~ 308 (666)
=.||++.|-+|++.+.+-..+- ....|+++|...+-+.++ .-..-|-++=..|++.|....-....+...|..+-
T Consensus 71 F~eLq~tr~~I~eFi~~~K~Np-nY~~li~~Lt~~kd~k~sVt~SSNKSdI~aAN~~L~qAL~~Ak~~K~~~~~~~ks~K 149 (157)
T PF04778_consen 71 FNELQQTRKQIDEFINKNKNNP-NYAELIKKLTQKKDSKNSVTESSNKSDIEAANQELKQALNKAKTHKEQADNQNKSIK 149 (157)
T ss_pred HHHHHHHHHHHHHHHhhccCCc-cHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3689999999999999885544 466888888777765443 23344555555555555554444444444444333
Q ss_pred H
Q 005989 309 R 309 (666)
Q Consensus 309 ~ 309 (666)
.
T Consensus 150 ~ 150 (157)
T PF04778_consen 150 E 150 (157)
T ss_pred H
Confidence 3
No 260
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=26.16 E-value=8.3e+02 Score=26.13 Aligned_cols=9 Identities=0% Similarity=0.032 Sum_probs=3.6
Q ss_pred hchHHHHHH
Q 005989 347 RDYEEEVRL 355 (666)
Q Consensus 347 ~e~kaEve~ 355 (666)
.+.++++..
T Consensus 249 ~~~~~~l~~ 257 (423)
T TIGR01843 249 TEAQARLAE 257 (423)
T ss_pred HHHHHHHHH
Confidence 333444433
No 261
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.14 E-value=5.7e+02 Score=26.91 Aligned_cols=15 Identities=47% Similarity=0.614 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 005989 324 ELERERKARILLENL 338 (666)
Q Consensus 324 elE~ErkaRellE~v 338 (666)
.++-+|+.=.++|.|
T Consensus 213 ~ie~erk~l~~lE~~ 227 (230)
T cd07625 213 KIEYERKKLSLLERI 227 (230)
T ss_pred HHHHHHHHHHHHHhc
Confidence 345555555555543
No 262
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=26.11 E-value=1.1e+03 Score=27.42 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005989 228 LVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKER 276 (666)
Q Consensus 228 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~ 276 (666)
+-..|...+.+.+.++..+++.......++..++..+.|+.-..-.--.
T Consensus 78 l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~ 126 (448)
T COG1322 78 LKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELN 126 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444555555566666666666666666666666666666654444333
No 263
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.08 E-value=7.9e+02 Score=25.89 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 005989 262 KQVAEEKIIRKDK-ERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSD 313 (666)
Q Consensus 262 kqlaEeK~~wK~K-E~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae 313 (666)
|+...+|+-++++ -.+||-.|+++|.+==..|.-+..+.+.+-.-|-.|+..
T Consensus 141 K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~r 193 (230)
T cd07625 141 KQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKE 193 (230)
T ss_pred HHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777766554 267888999998876667777777777777766666643
No 264
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=25.79 E-value=1.1e+03 Score=27.45 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=22.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 309 RDLSDMKSSFSNILKELERERKARILLENLCD 340 (666)
Q Consensus 309 ~ELae~K~s~~~~~kelE~ErkaRellE~vCd 340 (666)
+||.+-+..|.++.--|+.+++.+.+-|.+..
T Consensus 100 r~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~ 131 (459)
T KOG0288|consen 100 RELREQKAEFENAELALREMRRKMRIAERLAE 131 (459)
T ss_pred HHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777776666655
No 265
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=25.16 E-value=8.4e+02 Score=25.86 Aligned_cols=47 Identities=17% Similarity=0.420 Sum_probs=23.9
Q ss_pred HHhccccccccccHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhHHHHHHHHHHH
Q 005989 213 NRIWSLEEQHVSDIALVKALKMELDHSQ---TKIKELLQEKQTERQEVNDLMKQVA 265 (666)
Q Consensus 213 nrIw~leeq~~s~~slv~aL~~EL~~Ar---~~I~eL~~E~~s~~~ei~~l~kqla 265 (666)
|.+||.. +.. +..|..-+.++. ..+-.+.+||.....+-..-|++|+
T Consensus 4 ~~Fwg~~--~~G----~~~L~~r~k~g~~~~kel~~f~keRa~iEe~Yak~L~kLa 53 (269)
T cd07673 4 ENFWGEK--NSG----FDVLYHNMKHGQISTKELSDFIRERATIEEAYSRSMTKLA 53 (269)
T ss_pred hcccCCC--Ccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678664 322 333444444433 3444556677665555444555554
No 266
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=24.63 E-value=7.8e+02 Score=25.29 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQV 264 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kql 264 (666)
+..|..+|...+.+|.++-.+|+..+.++..-++.|
T Consensus 145 ~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~L 180 (221)
T PF05700_consen 145 LKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYL 180 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 455555555555555555555555444444444433
No 267
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=24.51 E-value=6.5e+02 Score=24.32 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=5.5
Q ss_pred hhhhHHHHHhh
Q 005989 369 NADRLILHISE 379 (666)
Q Consensus 369 eeER~mLq~AE 379 (666)
+.|=+|+-|++
T Consensus 85 EldDLL~ll~D 95 (136)
T PF04871_consen 85 ELDDLLVLLGD 95 (136)
T ss_pred hHHHHHHHHHh
Confidence 34445555554
No 268
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=24.27 E-value=7.7e+02 Score=25.14 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhchHHHHHHHhcC
Q 005989 289 ELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERK--ARILLENLCDEFAKGIRDYEEEVRLLRHK 359 (666)
Q Consensus 289 ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~Erk--aRellE~vCdElAk~I~e~kaEve~lk~e 359 (666)
.|+.=.+.++.++.+-...-..|.+++.-....+.+...+-. .-+++++.=.+..+-+.+.+++++.-+..
T Consensus 87 ~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~ 159 (205)
T PRK06231 87 EINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRE 159 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444443333222 34566666677777777777777765554
No 269
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.26 E-value=7.6e+02 Score=25.01 Aligned_cols=9 Identities=44% Similarity=0.818 Sum_probs=4.7
Q ss_pred HHhcccccc
Q 005989 213 NRIWSLEEQ 221 (666)
Q Consensus 213 nrIw~leeq 221 (666)
|-.|++--+
T Consensus 54 n~YWsFps~ 62 (188)
T PF03962_consen 54 NYYWSFPSQ 62 (188)
T ss_pred eEEEecChH
Confidence 445765444
No 270
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=24.24 E-value=7e+02 Score=24.63 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhhh
Q 005989 240 QTKIKELLQEKQTER 254 (666)
Q Consensus 240 r~~I~eL~~E~~s~~ 254 (666)
..+|+.|++++....
T Consensus 26 ~~~Ir~Li~~Q~~~E 40 (150)
T PF10454_consen 26 LQRIRRLIKEQHDHE 40 (150)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456677777666533
No 271
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=24.04 E-value=1.9e+02 Score=30.12 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 241 TKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKA 281 (666)
Q Consensus 241 ~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~a 281 (666)
..|..|.+|-...+...+.....|..|+..|.. |++||=.
T Consensus 138 ~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~e-EKekVi~ 177 (202)
T PF06818_consen 138 REVERLRAELQRERQRREEQRSSFEQERRTWQE-EKEKVIR 177 (202)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 334445555555566688889999999999987 7776643
No 272
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.62 E-value=1.7e+03 Score=28.89 Aligned_cols=192 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 005989 210 TVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIK--------- 280 (666)
Q Consensus 210 kVLnrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~--------- 280 (666)
.+|-.++-++-.......-|++++.|.-.-..++..-+.+.+..+++.-..++++..==.--+-|+..-..
T Consensus 217 ~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke 296 (1141)
T KOG0018|consen 217 QFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKE 296 (1141)
T ss_pred HHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcch
Q ss_pred ------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHH-----------
Q 005989 281 ------AAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARI----LLENLC----------- 339 (666)
Q Consensus 281 ------aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRe----llE~vC----------- 339 (666)
+-+..++..|+.=++.=.....--.+|-++|.++..+-..+.++.+..++.+. |.++.-
T Consensus 297 ~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~ 376 (1141)
T KOG0018|consen 297 NASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEAC 376 (1141)
T ss_pred hhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHh
Q ss_pred ----HHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhHHHHHhhhhhHHhhhhhHhhhhcccchhhHHHHHHHHHH
Q 005989 340 ----DEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQMKIAETQNSLSDKNTILDKLRLDI 411 (666)
Q Consensus 340 ----dElAk~I~e~kaEve~lk~es~k~~~ee~eeER~mLq~AEvWrEERvQMKL~eAk~~leeK~s~~dkL~~el 411 (666)
+||..--.+.+..-..|.+...+. .++++-.. |.++-| |++...+..|..+.+.+...-.++
T Consensus 377 ~~~~~el~~ln~~~r~~~~~ld~~~~~~--~elE~r~k-------~l~~sv-er~~~~~~~L~~~i~s~~~~~~e~ 442 (1141)
T KOG0018|consen 377 KEALEELEVLNRNMRSDQDTLDHELERR--AELEARIK-------QLKESV-ERLDKRRNKLAAKITSLSRSYEEL 442 (1141)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHH-------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
No 273
>PRK14141 heat shock protein GrpE; Provisional
Probab=23.24 E-value=8.7e+02 Score=25.36 Aligned_cols=60 Identities=15% Similarity=0.077 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 232 LKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELE 291 (666)
Q Consensus 232 L~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe 291 (666)
|..+|+..+.++.+|...-....-+++.+.|+...|+...+..-.+++-..|-.+-+-|+
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLe 95 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLR 95 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Confidence 455666666667777666666677788888888877776666666666665555555554
No 274
>PRK14157 heat shock protein GrpE; Provisional
Probab=23.06 E-value=5e+02 Score=27.50 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 005989 231 ALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKI 269 (666)
Q Consensus 231 aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~ 269 (666)
+|..+|...+.+|.+|...-....-+.+.+.|+...|+.
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e 119 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQD 119 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777765555666667777666655544
No 275
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=22.99 E-value=8.4e+02 Score=25.11 Aligned_cols=154 Identities=22% Similarity=0.287 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHH
Q 005989 228 LVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWK--DELEDERKLRKCSESLHR 305 (666)
Q Consensus 228 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk--~ELe~ERk~Rrr~E~ln~ 305 (666)
+|+||+. -|.-|+.|+=|+.-....+..|-+..+.-|-++.+...++-.+.-...+ .+|.. ++ .-+|+=-+
T Consensus 2 visALK~----LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~--qL-~aAEtRCs 74 (178)
T PF14073_consen 2 VISALKN----LQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSS--QL-SAAETRCS 74 (178)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHH--HH-HHHHHHHH
Confidence 5667664 4678888888888888888777777777776665433332222111111 01100 00 01222233
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhchHHHHHHHhcCcchhhhhhhhhhhHHHHHh
Q 005989 306 KLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKG-------IRDYEEEVRLLRHKPEMDHAHMKNADRLILHIS 378 (666)
Q Consensus 306 KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~-------I~e~kaEve~lk~es~k~~~ee~eeER~mLq~A 378 (666)
.|-+.|.-|+.-+..| |.||.+ ++|.- ..|-++ |-.--..++.|-++..+...--.--|.+|-++=
T Consensus 75 lLEKQLeyMRkmv~~a----e~er~~--~le~q-~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE 147 (178)
T PF14073_consen 75 LLEKQLEYMRKMVESA----EKERNA--VLEQQ-VSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELE 147 (178)
T ss_pred HHHHHHHHHHHHHHHH----HHhhhH--HHHHH-HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333332 233321 22221 111121 111112333444444443333344677888888
Q ss_pred hhhhHHhhhhhHhhhhc
Q 005989 379 ESWLDERMQMKIAETQN 395 (666)
Q Consensus 379 EvWrEERvQMKL~eAk~ 395 (666)
+-+.+|-=|-||+.-|.
T Consensus 148 ~KL~eEehqRKlvQdkA 164 (178)
T PF14073_consen 148 EKLQEEEHQRKLVQDKA 164 (178)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888865543
No 276
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=22.98 E-value=6.9e+02 Score=24.09 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHh
Q 005989 237 DHSQTKIKELLQEKQ 251 (666)
Q Consensus 237 ~~Ar~~I~eL~~E~~ 251 (666)
..|+..+.+++.+-+
T Consensus 4 ~eA~~ka~~I~~eA~ 18 (198)
T PF01991_consen 4 EEAQEKAEEIIAEAQ 18 (198)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666665543
No 277
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=22.80 E-value=5.9e+02 Score=30.39 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=37.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhh
Q 005989 294 RKLRKCSESLHRKLARDLSDM----KSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKN 369 (666)
Q Consensus 294 Rk~Rrr~E~ln~KL~~ELae~----K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~e 369 (666)
++||+..|.++....+||.++ +..+...-+.||.+.+. .+-++|..|| .+.+.+|.+-|+ |.||+--.
T Consensus 463 ~kL~~E~e~~q~~~~~~l~~~~~~~~~em~~~r~tlE~k~~~--n~~e~~kkl~---~~~qr~l~etKk---KQWC~nC~ 534 (588)
T KOG3612|consen 463 EKLRQEFEELQQTSRRELPVPLRNFELEMAEMRKTLEQKHAE--NIKEEIKKLA---EEHQRALAETKK---KQWCYNCL 534 (588)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHH--HHHHHHHHHH---HHHHHHHHHHHH---HHHHHhhh
Confidence 366677777777777777444 33444444556555442 2333344443 334555665555 46665544
Q ss_pred hh
Q 005989 370 AD 371 (666)
Q Consensus 370 eE 371 (666)
.|
T Consensus 535 ~E 536 (588)
T KOG3612|consen 535 DE 536 (588)
T ss_pred HH
Confidence 43
No 278
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=22.72 E-value=3.9e+02 Score=28.18 Aligned_cols=35 Identities=11% Similarity=0.346 Sum_probs=20.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHH-hhHHHHHHHHHH
Q 005989 291 EDERKLRKCSESLHRKLARDLSD-MKSSFSNILKEL 325 (666)
Q Consensus 291 e~ERk~Rrr~E~ln~KL~~ELae-~K~s~~~~~kel 325 (666)
.+.+.+|+....+|.+|..|+.+ +..-+.++-+.|
T Consensus 101 ~~~~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~~Y 136 (234)
T cd07686 101 KDKQQVKKSYIGVHQQIEAEMYKVTKTELEKLKCSY 136 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34466677777777777777655 333344444444
No 279
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=22.64 E-value=6.6e+02 Score=23.74 Aligned_cols=121 Identities=18% Similarity=0.233 Sum_probs=59.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 005989 223 VSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSES 302 (666)
Q Consensus 223 ~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ 302 (666)
+.+++-|..+..+++...+.+.+|...--+.+.+++.+..++.+-.. .+..++.+... + .++...
T Consensus 23 v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~------------~~~~L~~~~~~--k-~~~~~~ 87 (150)
T PF07200_consen 23 VKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYE------------ELKELESEYQE--K-EQQQDE 87 (150)
T ss_dssp GGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH------------HHHHHHHHHHH--H-HHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH------------HHHHHHHHHHH--H-HHHHHH
Confidence 34455588888888888888888887776666777777666653222 22222222211 1 112222
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhHHHHHh
Q 005989 303 LHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHIS 378 (666)
Q Consensus 303 ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~mLq~A 378 (666)
+..+..-.- ++.-+..++ .-.|+.|++||...-+.+-.|..+- ...-+-|..-|+=
T Consensus 88 l~~~~s~~~--l~~~L~~~~----------~e~eeeSe~lae~fl~g~~d~~~Fl--------~~f~~~R~~yH~R 143 (150)
T PF07200_consen 88 LSSNYSPDA--LLARLQAAA----------SEAEEESEELAEEFLDGEIDVDDFL--------KQFKEKRKLYHLR 143 (150)
T ss_dssp HHHCHHHHH--HHHHHHHHH----------HHHHHHHHHHC-S-SSSHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHccCCHHH--HHHHHHHHH----------HHHHHHHHHHHHHHhCCCCCHHHHH--------HHHHHHHHHHHHH
Confidence 222222211 111122222 2356789999998888877777653 3344455555543
No 280
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=22.57 E-value=9e+02 Score=25.29 Aligned_cols=11 Identities=27% Similarity=0.262 Sum_probs=5.8
Q ss_pred HHHHHHHhhcc
Q 005989 409 LDIENFLQAKH 419 (666)
Q Consensus 409 ~elE~FL~sk~ 419 (666)
.||..|...++
T Consensus 238 ~Di~~fv~~~~ 248 (261)
T cd07674 238 NLIRKFAESKG 248 (261)
T ss_pred HHHHHHHHhCC
Confidence 44555555554
No 281
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=22.30 E-value=3.4e+02 Score=27.03 Aligned_cols=48 Identities=29% Similarity=0.494 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 227 ALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDE 293 (666)
Q Consensus 227 slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~E 293 (666)
.+|..|+.+|.+-+..+--|.. =++++++++ |++...|..+++||++|
T Consensus 61 ~~v~~~~~~i~~k~~El~~L~~---~d~~kv~~~----------------E~L~d~v~eLkeel~~e 108 (146)
T PF05852_consen 61 NKVSSLETEISEKKKELSHLKK---FDRKKVEDL----------------EKLTDRVEELKEELEFE 108 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHH----------------HHHHHHHHHHHHHHHHH
No 282
>PF13514 AAA_27: AAA domain
Probab=22.05 E-value=1.7e+03 Score=28.24 Aligned_cols=32 Identities=13% Similarity=0.274 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005989 233 KMELDHSQTKIKELLQEKQTERQEVNDLMKQV 264 (666)
Q Consensus 233 ~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kql 264 (666)
..+|+.++..+..+..........+...+..+
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 648 (1111)
T PF13514_consen 617 AEELRAARAELEALRARRAAARAALAAALAAL 648 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555555555555555555555555555443
No 283
>PF15294 Leu_zip: Leucine zipper
Probab=22.04 E-value=8.4e+02 Score=26.67 Aligned_cols=82 Identities=18% Similarity=0.310 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---
Q 005989 228 LVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLH--- 304 (666)
Q Consensus 228 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln--- 304 (666)
.|..|+.|.+..+.+++-|+...-.. -+|..+|.+.|.+++.+.-+-+ .+..+=.-.
T Consensus 133 Ei~rLq~EN~kLk~rl~~le~~at~~-------------------l~Ek~kl~~~L~~lq~~~~~~~-~k~~~~~~~q~l 192 (278)
T PF15294_consen 133 EIDRLQEENEKLKERLKSLEKQATSA-------------------LDEKSKLEAQLKELQDEQGDQK-GKKDLSFKAQDL 192 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhhh-ccccccccccch
Confidence 46777778888887777776554432 1356777888888777443332 221110000
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Q 005989 305 RKLARDLSDMKSSFSNILKELERER 329 (666)
Q Consensus 305 ~KL~~ELae~K~s~~~~~kelE~Er 329 (666)
.-|-.-++.+|.-|.+++.+.+..-
T Consensus 193 ~dLE~k~a~lK~e~ek~~~d~~~~~ 217 (278)
T PF15294_consen 193 SDLENKMAALKSELEKALQDKESQQ 217 (278)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234445566777777777776643
No 284
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=21.75 E-value=3e+02 Score=26.17 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=23.9
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005989 216 WSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQ 255 (666)
Q Consensus 216 w~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ 255 (666)
|+++|-+ .-+++|..+-.++..+++.|.++.++-+..+.
T Consensus 3 FTl~EA~-~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 41 (120)
T PF09969_consen 3 FTLEEAN-ALLPLLRPILEEIRELKAELEELEERLQELED 41 (120)
T ss_pred cCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3443333 33566777777777777777777666655444
No 285
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=21.71 E-value=1.4e+03 Score=29.46 Aligned_cols=117 Identities=24% Similarity=0.402 Sum_probs=60.5
Q ss_pred HHhcccccccc-------ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 005989 213 NRIWSLEEQHV-------SDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLM---KQVAEEKIIRKDKERNRIKAA 282 (666)
Q Consensus 213 nrIw~leeq~~-------s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~---kqlaEeK~~wK~KE~eki~aa 282 (666)
|.||-.+|.+. ...-+|..|..||+..+.+|.+|..-. .+..++..++ +...++++.-++++-+..+.-
T Consensus 427 nGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~-~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee 505 (1041)
T KOG0243|consen 427 NGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELY-MNQLEIKELLKEEKEKLKSKLQNKNKELESLKEE 505 (1041)
T ss_pred CceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666651 455677788888888888877765433 2222222222 122334444444454545555
Q ss_pred HHHHHHHHHHHHHHhhhhHHH-------HHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 005989 283 VQSWKDELEDERKLRKCSESL-------HRKLARDLSDMKSSFSNILKELERERK 330 (666)
Q Consensus 283 i~slk~ELe~ERk~Rrr~E~l-------n~KL~~ELae~K~s~~~~~kelE~Erk 330 (666)
++.++..|..|=....+.+.. +.+|-+.|.+++..++.+.+-|.+..+
T Consensus 506 ~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~ 560 (1041)
T KOG0243|consen 506 LQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDR 560 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 555555554444444444333 444555555555555555544444433
No 286
>PTZ00121 MAEBL; Provisional
Probab=21.48 E-value=2.2e+03 Score=29.34 Aligned_cols=152 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhH
Q 005989 237 DHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKS 316 (666)
Q Consensus 237 ~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~ 316 (666)
+.+|....+-.+..+..+.+-..-..... ++.--.|.++--++-++--.+|.-..+..|+.=+..=.+-++.+.+++
T Consensus 1112 ee~r~~ee~~~r~e~arr~eeARrae~~R--r~EeaRKrEeaRraE~aRreEEaRr~EEaRraEeArr~EEaRraEE~R- 1188 (2084)
T PTZ00121 1112 EEARKAEEAKKKAEDARKAEEARKAEDAR--KAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVR- 1188 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhHHHHHhhhhhHHhhhhhHhhhhcc
Q 005989 317 SFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQMKIAETQNS 396 (666)
Q Consensus 317 s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~mLq~AEvWrEERvQMKL~eAk~~ 396 (666)
-...++-.|.+|++.+.=.. |.++.+.+-+...++.+.+.++. .+|....+.-...||.=|-..---+..+|+.+
T Consensus 1189 -r~EElRraEEaRkaEEaRRl---EE~RraEEARraEEErR~EE~Rr-aEEaRK~aEEAkraEEeR~~EE~Rk~Eear~a 1263 (2084)
T PTZ00121 1189 -KAEELRKAEDARKAEAARKA---EEERKAEEARKAEDAKKAEAVKK-AEEAKKDAEEAKKAEEERNNEEIRKFEEARMA 1263 (2084)
T ss_pred -HHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 287
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=21.42 E-value=9.4e+02 Score=25.07 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005989 321 ILKELERERKARILLENLCDEFAKGIR 347 (666)
Q Consensus 321 ~~kelE~ErkaRellE~vCdElAk~I~ 347 (666)
.-..|+...+..+=|-.+||||.-.++
T Consensus 180 Le~~LeQK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 180 LEESLEQKTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344677777777888999999976654
No 288
>PRK04654 sec-independent translocase; Provisional
Probab=21.31 E-value=4.2e+02 Score=27.98 Aligned_cols=14 Identities=43% Similarity=0.366 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 005989 282 AVQSWKDELEDERK 295 (666)
Q Consensus 282 ai~slk~ELe~ERk 295 (666)
.+.++++|+++|=+
T Consensus 42 ~~~~vk~El~~El~ 55 (214)
T PRK04654 42 QWDSVKQELERELE 55 (214)
T ss_pred HHHHHHHHHHHhhh
Confidence 44555555555543
No 289
>PRK00106 hypothetical protein; Provisional
Probab=21.27 E-value=1.4e+03 Score=27.07 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=6.1
Q ss_pred HHHHhhhhHHHHHH
Q 005989 293 ERKLRKCSESLHRK 306 (666)
Q Consensus 293 ERk~Rrr~E~ln~K 306 (666)
|+++.++.+.|++|
T Consensus 103 E~rL~qREE~LekR 116 (535)
T PRK00106 103 ESRLTERATSLDRK 116 (535)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 290
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=21.21 E-value=1.5e+03 Score=27.31 Aligned_cols=132 Identities=17% Similarity=0.266 Sum_probs=70.8
Q ss_pred cccHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--HHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 005989 223 VSDIALV-KALKMELDHSQTKIKELLQEKQTERQEVNDLMKQV--AEEKII------RKDKERNRIKAAVQSWKDELEDE 293 (666)
Q Consensus 223 ~s~~slv-~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kql--aEeK~~------wK~KE~eki~aai~slk~ELe~E 293 (666)
++..|.+ ..|+.|+.+-+..+..|...-+..-.+.+.|..-. -++++. ..-++ -..-...|-+.|.-+
T Consensus 75 pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e---~~~D~~kLLe~lqsd 151 (617)
T PF15070_consen 75 PAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQE---QQEDRQKLLEQLQSD 151 (617)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhccc
Confidence 3444444 47888888888888888866555433333332221 122221 11111 011233444455555
Q ss_pred HHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHh
Q 005989 294 RKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLR 357 (666)
Q Consensus 294 Rk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk 357 (666)
|-.=-|+-+-|+.|..-|.|+..+|.+...+-=.=.-+-..-..|-.||++.+++++.++..|+
T Consensus 152 k~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~ 215 (617)
T PF15070_consen 152 KATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK 215 (617)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677889999999999999999888765211112222223333344444444444444443
No 291
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=20.95 E-value=5e+02 Score=28.04 Aligned_cols=96 Identities=15% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 213 NRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELED 292 (666)
Q Consensus 213 nrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ 292 (666)
|.|..++.+-.+.+.+|..|+.+|..+++++.+|.. ...-.+-+--.+++.|..++..|..
T Consensus 200 ~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~-------------------~~~~~~P~v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 200 NKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRS-------------------ITPEQNPQVPSLQARIKSLRKQIDE 260 (362)
T ss_pred CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------hCCCCCCchHHHHHHHHHHHHHHHH
Q ss_pred HHHHh--------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 005989 293 ERKLR--------KCSESLHRKLARDLSDMKSSFSNILKELER 327 (666)
Q Consensus 293 ERk~R--------rr~E~ln~KL~~ELae~K~s~~~~~kelE~ 327 (666)
|++.= -....-...|.+|+.-++..+..++..++.
T Consensus 261 e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~ 303 (362)
T TIGR01010 261 QRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQ 303 (362)
T ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 292
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.89 E-value=2.8e+02 Score=26.29 Aligned_cols=39 Identities=15% Similarity=0.360 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEE 267 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEe 267 (666)
...|+.||++++.++.+-.++-...=.....||.+|+++
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~ 65 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQD 65 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888999888877776666655555555566666543
No 293
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=20.44 E-value=1.4e+03 Score=26.61 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhhhHHHHHHHHHH
Q 005989 243 IKELLQEKQTERQEVNDLMKQVAEEK--IIRKDKERNRIKAAVQSWK---------DELEDERKLRKCSESLHRKLARD 310 (666)
Q Consensus 243 I~eL~~E~~s~~~ei~~l~kqlaEeK--~~wK~KE~eki~aai~slk---------~ELe~ERk~Rrr~E~ln~KL~~E 310 (666)
+.+|..+-+...+++..+.+++.+=+ ..-..++.+.++..|+.|. ++|+.|++.=.+.|.+...+..-
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~ 234 (563)
T TIGR00634 156 ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNA 234 (563)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 34444444444444444443333211 1223345666666766665 46888887777777766655544
No 294
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=20.42 E-value=9.7e+02 Score=24.83 Aligned_cols=117 Identities=17% Similarity=0.216 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHH
Q 005989 242 KIKELLQEKQTERQEVNDLMKQVAEEKIIRK---DKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSF 318 (666)
Q Consensus 242 ~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK---~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~ 318 (666)
.|-...+++-....+-..-+++|+.--..-. .-++.-+..++..+..+.+.-=. .|..++..|..+-.-+
T Consensus 23 e~~~FlkkRa~iEeeYak~L~KLak~~~~~~~~~~~~~gs~~~a~~~il~~~e~lA~-------~h~~~a~~L~~~~~eL 95 (234)
T cd07652 23 EFATFLKKRAAIEEEHARGLKKLARTTLDTYKRPDHKQGSFSNAYHSSLEFHEKLAD-------NGLRFAKALNEMSDEL 95 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 3444556666655544444455543211110 01234566677777776554332 3445555555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhh
Q 005989 319 SNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKN 369 (666)
Q Consensus 319 ~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~e 369 (666)
....+++++.||. +-+-.-.+.+.+.+..+.++.-|..-+.. |+|+|
T Consensus 96 ~~l~~~~e~~RK~---~ke~~~k~~k~~~~a~~~leKAK~~Y~~~-c~e~E 142 (234)
T cd07652 96 SSLAKTVEKSRKS---IKETGKRAEKKVQDAEAAAEKAKARYDSL-ADDLE 142 (234)
T ss_pred HHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 7788888888886 33334456666777777777766665555 45554
No 295
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=20.31 E-value=1.2e+03 Score=26.06 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=8.0
Q ss_pred HHHHhhhhchHHHHHHH
Q 005989 340 DEFAKGIRDYEEEVRLL 356 (666)
Q Consensus 340 dElAk~I~e~kaEve~l 356 (666)
+++...|.+.+.++..+
T Consensus 246 ~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 246 DQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 34444455555555444
No 296
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=20.10 E-value=1e+03 Score=24.98 Aligned_cols=111 Identities=15% Similarity=0.277 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhchHHHHH
Q 005989 279 IKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILL----ENLCDEFAKGIRDYEEEVR 354 (666)
Q Consensus 279 i~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRell----E~vCdElAk~I~e~kaEve 354 (666)
|.-+|++++.+|..=|+..-++=...+.|-++|.+...-..+. |.+++..| |++..+++..+..|+..+.
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~------e~~A~~Al~~g~E~LAr~al~~~~~le~~~~ 102 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKL------EEKAELALQAGNEDLAREALEEKQSLEDLAK 102 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555444444444444444555554433322222 45555555 6677777777888888777
Q ss_pred HHhcCcchhhhhhhhhhhHHHHHhhhhhHHhhhhhHhhhhc
Q 005989 355 LLRHKPEMDHAHMKNADRLILHISESWLDERMQMKIAETQN 395 (666)
Q Consensus 355 ~lk~es~k~~~ee~eeER~mLq~AEvWrEERvQMKL~eAk~ 395 (666)
.+++.-....--...-.+.|-.+-.-|-+=|-|+....|+.
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 103 ALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77765333210111223334444444444455555444444
Done!