Query 005989
Match_columns 666
No_of_seqs 105 out of 119
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 13:00:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005989.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005989hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ocy_A RAB guanine nucleotide 97.3 0.0072 2.5E-07 57.6 15.6 127 205-354 5-132 (154)
2 2eqb_B RAB guanine nucleotide 95.9 0.097 3.3E-06 46.6 12.0 91 232-348 3-94 (97)
3 3oja_B Anopheles plasmodium-re 95.2 0.2 6.7E-06 54.1 13.6 59 301-359 515-573 (597)
4 1c1g_A Tropomyosin; contractIl 93.7 4.3 0.00015 37.5 23.0 33 230-262 9-41 (284)
5 2e7s_A RAB guanine nucleotide 92.1 0.67 2.3E-05 43.5 9.3 106 231-352 12-118 (135)
6 1i84_S Smooth muscle myosin he 90.6 0.78 2.7E-05 54.8 10.2 21 229-249 859-879 (1184)
7 1i84_S Smooth muscle myosin he 90.1 0.77 2.6E-05 54.9 9.6 38 228-265 865-902 (1184)
8 2hg7_A Phage-like element PBSX 89.6 0.064 2.2E-06 48.0 0.0 39 282-320 64-102 (110)
9 3ol1_A Vimentin; structural ge 89.2 12 0.00042 33.7 15.0 96 230-358 16-115 (119)
10 3u59_A Tropomyosin beta chain; 89.2 5.8 0.0002 34.7 12.2 74 229-307 11-95 (101)
11 3u1c_A Tropomyosin alpha-1 cha 87.2 9.8 0.00033 33.4 12.3 74 229-307 11-95 (101)
12 2dfs_A Myosin-5A; myosin-V, in 86.1 4.9 0.00017 48.1 12.8 19 278-296 957-975 (1080)
13 2w6b_A RHO guanine nucleotide 83.3 4.4 0.00015 32.9 7.4 24 286-309 29-52 (56)
14 3oja_A Leucine-rich immune mol 83.1 13 0.00044 39.4 13.2 66 293-358 412-477 (487)
15 2v71_A Nuclear distribution pr 82.3 29 0.001 34.0 14.3 47 218-264 33-79 (189)
16 3oja_B Anopheles plasmodium-re 81.8 13 0.00043 40.1 12.8 55 278-332 474-532 (597)
17 2dfs_A Myosin-5A; myosin-V, in 81.2 15 0.00052 44.0 14.3 18 341-358 1020-1037(1080)
18 2fxo_A Myosin heavy chain, car 73.7 52 0.0018 29.8 14.8 74 277-357 16-89 (129)
19 1cii_A Colicin IA; bacteriocin 72.7 42 0.0015 37.3 13.4 41 228-268 378-418 (602)
20 2v4h_A NF-kappa-B essential mo 72.2 32 0.0011 31.3 10.5 32 320-358 73-104 (110)
21 2w6b_A RHO guanine nucleotide 72.0 9.1 0.00031 31.1 6.1 38 307-344 15-52 (56)
22 3swk_A Vimentin; cytoskeleton, 70.1 21 0.00073 30.6 8.5 54 304-357 16-76 (86)
23 3na7_A HP0958; flagellar bioge 68.5 96 0.0033 30.7 18.7 42 317-358 91-132 (256)
24 2p22_C Protein SRN2; endosome, 67.9 94 0.0032 30.3 13.7 34 335-376 140-175 (192)
25 2i1j_A Moesin; FERM, coiled-co 67.9 6.4 0.00022 43.9 6.1 102 248-361 293-401 (575)
26 3vkg_A Dynein heavy chain, cyt 67.3 71 0.0024 42.8 16.1 13 72-84 1660-1672(3245)
27 3ol1_A Vimentin; structural ge 64.7 80 0.0027 28.3 15.2 86 227-317 20-105 (119)
28 2eqb_B RAB guanine nucleotide 64.1 80 0.0027 28.1 12.7 78 230-314 8-95 (97)
29 3oja_A Leucine-rich immune mol 63.0 81 0.0028 33.3 13.2 24 335-358 433-456 (487)
30 3tnu_A Keratin, type I cytoske 62.4 74 0.0025 28.8 11.1 81 227-308 31-116 (131)
31 3iyk_A VP5; icosahedral virus; 61.2 39 0.0013 37.7 10.4 19 237-255 93-111 (526)
32 3haj_A Human pacsin2 F-BAR; pa 60.8 1.8E+02 0.0062 31.2 16.9 32 297-328 131-162 (486)
33 3o0z_A RHO-associated protein 60.1 1.3E+02 0.0044 29.2 15.3 48 274-321 62-116 (168)
34 3cl3_D NF-kappa-B essential mo 57.0 27 0.00092 32.6 7.1 93 229-328 4-102 (130)
35 2b5u_A Colicin E3; high resolu 56.8 1.3E+02 0.0044 33.8 13.4 51 367-418 382-432 (551)
36 3l4f_A RHO guanine nucleotide 55.8 27 0.00093 28.8 6.2 41 307-347 12-52 (61)
37 2ocy_A RAB guanine nucleotide 55.5 1.4E+02 0.0049 28.4 16.6 91 308-413 50-140 (154)
38 3tnu_B Keratin, type II cytosk 55.3 1.2E+02 0.004 27.3 11.9 80 228-308 30-114 (129)
39 3i00_A HIP-I, huntingtin-inter 54.5 98 0.0034 28.2 10.4 66 227-314 15-80 (120)
40 3o0z_A RHO-associated protein 54.1 1.6E+02 0.0055 28.5 17.7 85 229-313 43-129 (168)
41 2v0o_A FCHO2, FCH domain only 53.8 1.6E+02 0.0054 28.3 15.7 24 242-265 36-59 (276)
42 2e7s_A RAB guanine nucleotide 52.3 63 0.0022 30.3 8.9 91 226-316 17-117 (135)
43 2fxo_A Myosin heavy chain, car 51.5 1.4E+02 0.0047 27.0 16.8 43 285-327 52-94 (129)
44 3u06_A Protein claret segregat 50.6 33 0.0011 36.8 7.7 35 230-264 6-40 (412)
45 4ani_A Protein GRPE; chaperone 48.1 2.2E+02 0.0075 28.3 12.7 64 228-291 60-123 (213)
46 1k1f_A Breakpoint cluster regi 44.7 30 0.001 29.2 4.8 42 229-270 28-69 (72)
47 3l4f_A RHO guanine nucleotide 43.7 64 0.0022 26.7 6.5 29 285-313 25-53 (61)
48 4etp_A Kinesin-like protein KA 41.2 59 0.002 34.7 7.8 29 229-257 5-33 (403)
49 1m1j_B Fibrinogen beta chain; 39.5 1.7E+02 0.0057 32.3 11.1 43 223-265 117-159 (464)
50 3i00_A HIP-I, huntingtin-inter 38.1 1.6E+02 0.0056 26.8 9.1 6 286-291 73-78 (120)
51 3q8t_A Beclin-1; autophagy, AT 37.4 1.5E+02 0.0051 25.8 8.4 45 335-379 30-74 (96)
52 4e61_A Protein BIM1; EB1-like 36.7 64 0.0022 29.2 6.1 35 226-260 3-37 (106)
53 2b5u_A Colicin E3; high resolu 35.8 2.8E+02 0.0097 31.1 12.0 22 301-322 408-429 (551)
54 3a7p_A Autophagy protein 16; c 35.3 3E+02 0.01 26.2 12.9 42 272-313 94-135 (152)
55 3mq7_A Bone marrow stromal ant 34.3 2.8E+02 0.0096 25.6 11.6 67 230-314 28-94 (121)
56 3mq9_A Bone marrow stromal ant 32.1 4.6E+02 0.016 27.4 14.6 20 338-357 451-470 (471)
57 3hnw_A Uncharacterized protein 32.0 3.1E+02 0.011 25.3 12.1 47 223-269 55-103 (138)
58 3vem_A Helicase protein MOM1; 31.6 3E+02 0.01 25.2 9.6 38 285-328 61-98 (115)
59 1h7c_A Tubulin-specific chaper 31.4 1.6E+02 0.0054 26.3 7.7 29 236-264 9-37 (108)
60 3f1i_H Hepatocyte growth facto 31.1 2.9E+02 0.0099 24.7 9.4 89 200-301 7-97 (98)
61 3jsv_C NF-kappa-B essential mo 30.8 1.7E+02 0.0059 25.9 7.7 73 265-362 14-86 (94)
62 3mq9_A Bone marrow stromal ant 29.9 87 0.003 32.9 6.8 44 227-270 397-440 (471)
63 3ni0_A Bone marrow stromal ant 29.4 3.1E+02 0.011 24.5 9.2 41 230-270 21-61 (99)
64 3ghg_A Fibrinogen alpha chain; 28.3 2.7E+02 0.0093 31.4 10.4 33 279-311 62-94 (562)
65 3i2w_A Syndapin, LD46328P; EFC 26.3 4.6E+02 0.016 25.5 14.5 66 227-293 12-79 (290)
66 2xv5_A Lamin-A/C; structural p 26.3 2.4E+02 0.0083 23.6 7.6 29 232-260 3-31 (74)
67 2yy0_A C-MYC-binding protein; 25.6 84 0.0029 24.9 4.4 33 225-257 17-49 (53)
68 3vkg_A Dynein heavy chain, cyt 25.3 1.5E+03 0.05 31.0 24.9 34 236-269 1929-1969(3245)
69 1ic2_A Tropomyosin alpha chain 25.0 3E+02 0.01 22.9 10.9 26 229-254 8-33 (81)
70 2i1j_A Moesin; FERM, coiled-co 24.9 1.8E+02 0.0062 32.4 8.5 22 341-362 409-430 (575)
71 3hnw_A Uncharacterized protein 24.2 4.2E+02 0.014 24.4 10.0 70 285-354 65-134 (138)
72 2l7b_A Apolipoprotein E, APO-E 24.1 3.5E+02 0.012 27.9 9.9 16 402-417 217-232 (307)
73 3tnu_A Keratin, type I cytoske 22.2 4.3E+02 0.015 23.7 10.1 31 233-263 30-60 (131)
No 1
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=97.29 E-value=0.0072 Score=57.65 Aligned_cols=127 Identities=21% Similarity=0.335 Sum_probs=99.6
Q ss_pred hHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 205 STELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQ 284 (666)
Q Consensus 205 S~EllkVLnrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~ 284 (666)
|+.|+..+|++-.|+|. +..++.+|..++.+|++|+..+.. ++.+... + .-+.+-+.
T Consensus 5 StKLI~Ain~qs~LeD~-------L~~~R~el~~~~~ri~~lE~~r~~----~~~l~~~----~--------~~~~~e~~ 61 (154)
T 2ocy_A 5 STQLIESVDKQSHLEEQ-------LNKSLKTIASQKAAIENYNQLKED----YNTLKRE----L--------SDRDDEVK 61 (154)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTHHHHHH----HHHHHTH----H--------HHHHHHHH
T ss_pred HHHHHHHHHhhccHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----H--------hhhhHHHH
Confidence 68999999999888885 578899999999999999987653 3333222 1 23566777
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q 005989 285 SWKDELEDERKLRKCSESLHRKLARDLSDMKSS-FSNILKELERERKARILLENLCDEFAKGIRDYEEEVR 354 (666)
Q Consensus 285 slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s-~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve 354 (666)
.|.++|..|+..|..+|.-..++-.||-+.-.| |..|=+=.-.+|+.+..+|.=-+.|-..+.+-+.-++
T Consensus 62 ~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 62 RLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLD 132 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999997655 5555555567899999999888888887776544443
No 2
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.94 E-value=0.097 Score=46.64 Aligned_cols=91 Identities=20% Similarity=0.348 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005989 232 LKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDL 311 (666)
Q Consensus 232 L~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~EL 311 (666)
|..+|+.+|.+|.+|..+... +.+-+..|..+|..|+..|..+|.-..++-.||
T Consensus 3 ~~~~~e~lre~l~~le~~~~~--------------------------~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El 56 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSD--------------------------RDDEVKRLREDIAKENELRTKAEEEADKLNKEV 56 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHh--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788888888888866654 333444577888888888888888888888888
Q ss_pred HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 005989 312 SDMKSS-FSNILKELERERKARILLENLCDEFAKGIRD 348 (666)
Q Consensus 312 ae~K~s-~~~~~kelE~ErkaRellE~vCdElAk~I~e 348 (666)
-+.-.| |..|=+=.=.+|+.+..+|.--+.|...|.|
T Consensus 57 EeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 57 EDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 886554 4555555556788888888777777766654
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.18 E-value=0.2 Score=54.12 Aligned_cols=59 Identities=20% Similarity=0.168 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcC
Q 005989 301 ESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHK 359 (666)
Q Consensus 301 E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~e 359 (666)
+..+.++..++...+.++..-.++|++-++.++.||..|++.-+.+.+.+.|+..++++
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~ 573 (597)
T 3oja_B 515 KERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQK 573 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 33555556666666666666667777777777777777777777777766666665544
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=93.72 E-value=4.3 Score=37.53 Aligned_cols=33 Identities=15% Similarity=0.300 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005989 230 KALKMELDHSQTKIKELLQEKQTERQEVNDLMK 262 (666)
Q Consensus 230 ~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~k 262 (666)
.+|+.+++.+...+.+|..+....+.+++.+-.
T Consensus 9 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 41 (284)
T 1c1g_A 9 QMLKLDKENALDRADEAEADKKAAEDRSKQLED 41 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555544444444444444444433333
No 5
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.09 E-value=0.67 Score=43.47 Aligned_cols=106 Identities=18% Similarity=0.292 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005989 231 ALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARD 310 (666)
Q Consensus 231 aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~E 310 (666)
-++.+|.-.+++|++|+..+.. ++.+.+.+ ..+..-+..+..+|..|+..|..+|.-..++-.|
T Consensus 12 ~~r~~l~~~~~~~~~le~l~~~----l~~l~~~l------------~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E 75 (135)
T 2e7s_A 12 KSLKTIASQKAAIENYNQLKED----YNTLKREL------------SDRDDEVKRLREDIAKENELRTKAEEEADKLNKE 75 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHT------------TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778888888876652 33333333 2334456679999999999999999999999999
Q ss_pred HHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Q 005989 311 LSDMKSS-FSNILKELERERKARILLENLCDEFAKGIRDYEEE 352 (666)
Q Consensus 311 Lae~K~s-~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaE 352 (666)
|-+.-+| |..|=+=.-.+|+.+..+|.=-+.|-..+++-+.-
T Consensus 76 lE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~l 118 (135)
T 2e7s_A 76 VEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDML 118 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997655 55565556667888888888888888777764443
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=90.59 E-value=0.78 Score=54.81 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQE 249 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E 249 (666)
+..|+.||...+..+..+..+
T Consensus 859 l~~L~~eL~el~~~L~~le~~ 879 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAE 879 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444444443
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=90.15 E-value=0.77 Score=54.87 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005989 228 LVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVA 265 (666)
Q Consensus 228 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqla 265 (666)
-+..|+.+|......+.+|..+....+.+++.+..++.
T Consensus 865 eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 865 ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554444444444443
No 8
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=89.63 E-value=0.064 Score=47.97 Aligned_cols=39 Identities=36% Similarity=0.467 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHH
Q 005989 282 AVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSN 320 (666)
Q Consensus 282 ai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~ 320 (666)
-|+.+..||..|+-+||++|-+|.-|++||+.+|..+..
T Consensus 64 q~~~laqels~eklarkqleeln~~Lg~Els~iKl~lL~ 102 (110)
T 2hg7_A 64 QVELLAQELSQEKLARKQLEELNKTLGNELSDIKLSLLS 102 (110)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888899999999999999999999999987643
No 9
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=89.23 E-value=12 Score=33.69 Aligned_cols=96 Identities=20% Similarity=0.286 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005989 230 KALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLAR 309 (666)
Q Consensus 230 ~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ 309 (666)
.....++...|.+|..+..++-...-++ +.++.++++++...+.|-..|..+|.--..|-+
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~lel-------------------dn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK 76 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVER-------------------DNLAEDIMRLREKLQEEMLQREEAENTLQSFRQ 76 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 3456778888888888888776544433 455667778888888888888777754444433
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhchHHHHHHHhc
Q 005989 310 DLSDMKSSFSNILKELERERKARIL----LENLCDEFAKGIRDYEEEVRLLRH 358 (666)
Q Consensus 310 ELae~K~s~~~~~kelE~ErkaRel----lE~vCdElAk~I~e~kaEve~lk~ 358 (666)
.| +.+--+|.= +|.+.+||+--=..+++||..|..
T Consensus 77 ~l--------------D~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~ 115 (119)
T 3ol1_A 77 DV--------------DNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQA 115 (119)
T ss_dssp HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cc--------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 333333322 344555555544556677776654
No 10
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.20 E-value=5.8 Score=34.67 Aligned_cols=74 Identities=19% Similarity=0.342 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQ-------EVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRK--- 298 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~-------ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rr--- 298 (666)
|.+|+.|.+.|..++.+++........ +|..|-+++.- =--+.+++...+......|+...+.+.
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~-----lE~eld~~~e~l~~a~~kLe~~ek~~~~AE 85 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKG-----TEDEVEKYSESVKEAQEKLEQAEKKATDAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999998888776554332 33333333310 011446777777888888888888887
Q ss_pred -hhHHHHHHH
Q 005989 299 -CSESLHRKL 307 (666)
Q Consensus 299 -r~E~ln~KL 307 (666)
.+.+||||+
T Consensus 86 ~evasLnRri 95 (101)
T 3u59_A 86 AEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 455666665
No 11
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.22 E-value=9.8 Score=33.44 Aligned_cols=74 Identities=16% Similarity=0.292 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTE-------RQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRK--- 298 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~-------~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rr--- 298 (666)
|.+|+.|.+.|..++.+++...+.. ..+|..|-+++.-= --+-|++...+...+..|+...+.+-
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~l-----E~eld~~ee~L~ea~~kLee~ek~~~~aE 85 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVT-----EDSRDQVLEELHKSEDSLLFAEENAAKAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999988888877654432 23444444433210 01346777777788888888888887
Q ss_pred -hhHHHHHHH
Q 005989 299 -CSESLHRKL 307 (666)
Q Consensus 299 -r~E~ln~KL 307 (666)
.+.+||||+
T Consensus 86 ~ev~~L~Rri 95 (101)
T 3u1c_A 86 SEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 555666665
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.12 E-value=4.9 Score=48.10 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005989 278 RIKAAVQSWKDELEDERKL 296 (666)
Q Consensus 278 ki~aai~slk~ELe~ERk~ 296 (666)
+...-+..|+.++++..++
T Consensus 957 ~~~~e~~~L~~~l~~le~~ 975 (1080)
T 2dfs_A 957 TYSTETEKLRSDVERLRMS 975 (1080)
T ss_dssp HHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555565555555544
No 13
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=83.35 E-value=4.4 Score=32.88 Aligned_cols=24 Identities=42% Similarity=0.547 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Q 005989 286 WKDELEDERKLRKCSESLHRKLAR 309 (666)
Q Consensus 286 lk~ELe~ERk~Rrr~E~ln~KL~~ 309 (666)
|+.=||.|.+.|+++|.+=+|+.+
T Consensus 29 m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 29 MKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444578899999999999888843
No 14
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.07 E-value=13 Score=39.39 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=44.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhc
Q 005989 293 ERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRH 358 (666)
Q Consensus 293 ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~ 358 (666)
..+..++.|.+-.++-.|...++.-....-.+.++.++....++.+-+|+-..|.+..+.+-.+.+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 445556666666666666666666666666677777777777777777777777777776655544
No 15
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=82.31 E-value=29 Score=34.04 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=27.1
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005989 218 LEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQV 264 (666)
Q Consensus 218 leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kql 264 (666)
|.|-+.++=-|=..|..||+++..++++|.......+.+++.+-.++
T Consensus 33 l~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 33 LVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666666666666555555554444333
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.85 E-value=13 Score=40.09 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 005989 278 RIKAAVQSWKDELEDERKLRK----CSESLHRKLARDLSDMKSSFSNILKELERERKAR 332 (666)
Q Consensus 278 ki~aai~slk~ELe~ERk~Rr----r~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaR 332 (666)
...+.++.++.+++..+..=+ .++....+|.+++..++.-......++.+.+++.
T Consensus 474 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 474 QQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 344556666666655544322 2233335555555555554444444444444443
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=81.25 E-value=15 Score=43.95 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=7.6
Q ss_pred HHHhhhhchHHHHHHHhc
Q 005989 341 EFAKGIRDYEEEVRLLRH 358 (666)
Q Consensus 341 ElAk~I~e~kaEve~lk~ 358 (666)
+|...|...+.|...|++
T Consensus 1020 ~L~~kv~~L~~e~~~L~q 1037 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444443
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=73.75 E-value=52 Score=29.76 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 005989 277 NRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLL 356 (666)
Q Consensus 277 eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~l 356 (666)
.+...-|..+++.|+.+-+.|+.+|.-|.+|..|..++. ..|+.|+-.-.=.|+.|+.|...-.+.+..|..|
T Consensus 16 ~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~-------~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el 88 (129)
T 2fxo_A 16 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQ-------LQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888999999999999999999999887754 4466676666667888888877766666666665
Q ss_pred h
Q 005989 357 R 357 (666)
Q Consensus 357 k 357 (666)
.
T Consensus 89 ~ 89 (129)
T 2fxo_A 89 N 89 (129)
T ss_dssp H
T ss_pred H
Confidence 4
No 19
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=72.72 E-value=42 Score=37.29 Aligned_cols=41 Identities=29% Similarity=0.454 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 005989 228 LVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEK 268 (666)
Q Consensus 228 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK 268 (666)
-++++..|.++|+...+.+++|+--.++.+.-+-++++|+|
T Consensus 378 qvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~K 418 (602)
T 1cii_A 378 NLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEK 418 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34445555555555555555555555555555555555554
No 20
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=72.22 E-value=32 Score=31.30 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhc
Q 005989 320 NILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRH 358 (666)
Q Consensus 320 ~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~ 358 (666)
=+-.|.+.||.+|+-+- -++.+++.+++.|.+
T Consensus 73 IY~~DF~aERadREkl~-------~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 73 IYKADFQAERHAREKLV-------EKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHccchhhHHHHH-------hHHHHHHHHHHHHHH
Confidence 34567777777776443 334444444444443
No 21
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=72.03 E-value=9.1 Score=31.07 Aligned_cols=38 Identities=29% Similarity=0.446 Sum_probs=28.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005989 307 LARDLSDMKSSFSNILKELERERKARILLENLCDEFAK 344 (666)
Q Consensus 307 L~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk 344 (666)
|..|+.+.+.-+++.-+-||.|.|||.-||.+-..+.+
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666677778899999999999999877744
No 22
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=70.13 E-value=21 Score=30.62 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hchHHHHHHHh
Q 005989 304 HRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGI-------RDYEEEVRLLR 357 (666)
Q Consensus 304 n~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I-------~e~kaEve~lk 357 (666)
|.+|.-|+-.++.++-.+-.-||.|-..|.-+|+-..-|-+.+ -+.++.|+.|+
T Consensus 16 ~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 16 KARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666667777666666665444444433 33555555554
No 23
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=68.54 E-value=96 Score=30.68 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhc
Q 005989 317 SFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRH 358 (666)
Q Consensus 317 s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~ 358 (666)
-+....++++.-.+....+|+-=-++...|...++++..++.
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~ 132 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKK 132 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777777777777777777777777776666665544
No 24
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=67.90 E-value=94 Score=30.32 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhhch--HHHHHHHhcCcchhhhhhhhhhhHHHH
Q 005989 335 LENLCDEFAKGIRDY--EEEVRLLRHKPEMDHAHMKNADRLILH 376 (666)
Q Consensus 335 lE~vCdElAk~I~e~--kaEve~lk~es~k~~~ee~eeER~mLq 376 (666)
.|+.|++++....+. +-+|..+- ...-+.|...|
T Consensus 140 ~eeeS~~l~~~F~~~~~e~dv~~Fl--------~~y~~~R~~yH 175 (192)
T 2p22_C 140 LDEESSQLETTTRSIDSADDLDQFI--------KNYLDIRTQYH 175 (192)
T ss_dssp HHHHHHHHHHSCSCCCCHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcccchHHHHH--------HHHHHHHHHHH
Confidence 578899999988774 67777644 33445555555
No 25
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=67.86 E-value=6.4 Score=43.85 Aligned_cols=102 Identities=16% Similarity=0.248 Sum_probs=39.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 005989 248 QEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELER 327 (666)
Q Consensus 248 ~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ 327 (666)
.-++.+.-+|..+-.|.-|||... -.|++ -|..|+.+|..+|.--.-|-.-|..++..+.++-.+|++
T Consensus 293 ~~r~~d~~e~qqm~~~a~e~~~~~-~~e~~-----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (575)
T 2i1j_A 293 RRRKPDTIDVQQMKAQAREEKLAK-QAQRE-----------KLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLE 360 (575)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHH-HHHHT-----------TCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCcHHHHHHHHHHHHHHHHH-HHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666666666666532 22333 244466666666666666666666666666666666654
Q ss_pred HHH-HHHHH------HHHHHHHHhhhhchHHHHHHHhcCcc
Q 005989 328 ERK-ARILL------ENLCDEFAKGIRDYEEEVRLLRHKPE 361 (666)
Q Consensus 328 Erk-aRell------E~vCdElAk~I~e~kaEve~lk~es~ 361 (666)
-.. ++.|- |+-...|++.-.+.+++...|...+.
T Consensus 361 ~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~ 401 (575)
T 2i1j_A 361 AQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKN 401 (575)
T ss_dssp HHHC-------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 22222 22234444444444444444444433
No 26
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=67.31 E-value=71 Score=42.83 Aligned_cols=13 Identities=8% Similarity=0.039 Sum_probs=7.5
Q ss_pred chHhhhhhhhccc
Q 005989 72 VSARKLCATLWEI 84 (666)
Q Consensus 72 vSARKLaAtLWEi 84 (666)
-|.=||||-+=.+
T Consensus 1660 qSLtrLAa~i~~~ 1672 (3245)
T 3vkg_A 1660 SVLSRFVAWMNGL 1672 (3245)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCC
Confidence 4666777755333
No 27
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=64.71 E-value=80 Score=28.35 Aligned_cols=86 Identities=15% Similarity=0.260 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005989 227 ALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRK 306 (666)
Q Consensus 227 slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 306 (666)
+.|..|+..|+.+-..--.|+-|....+..++.|..++.+|...+ ..+.+.|..++..++++==.|-.+|.--.-
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r-----~~~E~di~~lrK~lD~~~l~r~dLE~~ies 94 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR-----EEAENTLQSFRQDVDNASLARLDLERKVES 94 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----HHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 458889999988888888888899999999999999998887643 445677888888888887777777776666
Q ss_pred HHHHHHHhhHH
Q 005989 307 LARDLSDMKSS 317 (666)
Q Consensus 307 L~~ELae~K~s 317 (666)
|..||.=.|..
T Consensus 95 L~eEl~FLKk~ 105 (119)
T 3ol1_A 95 LQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67777554433
No 28
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.06 E-value=80 Score=28.15 Aligned_cols=78 Identities=22% Similarity=0.373 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------HHHHHHhhh
Q 005989 230 KALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERN--RIKAAVQSWKDEL--------EDERKLRKC 299 (666)
Q Consensus 230 ~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~e--ki~aai~slk~EL--------e~ERk~Rrr 299 (666)
..|+.+|.++..++.....|.. .|+..|++|+..+..-|.+ +|..-|.+|-.-| -.+|+.|-.
T Consensus 8 e~lre~l~~le~~~~~~~~e~~-------~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~ 80 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVK-------RLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYA 80 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666555533 3555555665555443322 2333333332222 346888999
Q ss_pred hHHHHHHHHHHHHHh
Q 005989 300 SESLHRKLARDLSDM 314 (666)
Q Consensus 300 ~E~ln~KL~~ELae~ 314 (666)
+|.-|.+|..+|.|.
T Consensus 81 ~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 81 IEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999998874
No 29
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=63.00 E-value=81 Score=33.25 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhhhchHHHHHHHhc
Q 005989 335 LENLCDEFAKGIRDYEEEVRLLRH 358 (666)
Q Consensus 335 lE~vCdElAk~I~e~kaEve~lk~ 358 (666)
++..++.+..+|...++|-+.++.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~ 456 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKK 456 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhh
Confidence 555566666666666665555544
No 30
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=62.40 E-value=74 Score=28.75 Aligned_cols=81 Identities=21% Similarity=0.182 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhH
Q 005989 227 ALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELE-----DERKLRKCSE 301 (666)
Q Consensus 227 slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe-----~ERk~Rrr~E 301 (666)
..+.+.++|+-..|..|+.|..|-.+.+..-..|-..|++=.. +-.-+-..+.+.|..+..+|. -+|.++.--+
T Consensus 31 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~-~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~ 109 (131)
T 3tnu_A 31 ELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG-RYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKI 109 (131)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888888887777777777765433 334444555555555555542 2344444444
Q ss_pred HHHHHHH
Q 005989 302 SLHRKLA 308 (666)
Q Consensus 302 ~ln~KL~ 308 (666)
.||-||+
T Consensus 110 Ll~vKl~ 116 (131)
T 3tnu_A 110 LLDVKTR 116 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 31
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=61.20 E-value=39 Score=37.67 Aligned_cols=19 Identities=37% Similarity=0.382 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 005989 237 DHSQTKIKELLQEKQTERQ 255 (666)
Q Consensus 237 ~~Ar~~I~eL~~E~~s~~~ 255 (666)
..-+..|+||+.|++.++-
T Consensus 93 ~~~~~Kl~eLE~e~k~d~~ 111 (526)
T 3iyk_A 93 RGIQAKLKELEDEQRNELV 111 (526)
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 5688999999999887554
No 32
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=60.80 E-value=1.8e+02 Score=31.19 Aligned_cols=32 Identities=16% Similarity=0.056 Sum_probs=18.0
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 005989 297 RKCSESLHRKLARDLSDMKSSFSNILKELERE 328 (666)
Q Consensus 297 Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~E 328 (666)
||.++.--.|+.++|.+.-..+.++.+.|+..
T Consensus 131 rK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~ 162 (486)
T 3haj_A 131 TKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAA 162 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666666655555555555555443
No 33
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=60.13 E-value=1.3e+02 Score=29.18 Aligned_cols=48 Identities=15% Similarity=0.283 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-------HHHHHHHHHhhHHHHHH
Q 005989 274 KERNRIKAAVQSWKDELEDERKLRKCSESLH-------RKLARDLSDMKSSFSNI 321 (666)
Q Consensus 274 KE~eki~aai~slk~ELe~ERk~Rrr~E~ln-------~KL~~ELae~K~s~~~~ 321 (666)
..++.+..-+..|+..|+.||+.|.+..-+. .-|--||..+|....++
T Consensus 62 ~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~ 116 (168)
T 3o0z_A 62 NSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV 116 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666655432 23444555555544444
No 34
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=57.00 E-value=27 Score=32.59 Aligned_cols=93 Identities=18% Similarity=0.260 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQV---AEEKIIRK---DKERNRIKAAVQSWKDELEDERKLRKCSES 302 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kql---aEeK~~wK---~KE~eki~aai~slk~ELe~ERk~Rrr~E~ 302 (666)
|.+|-.||+.|+....+-+.++++.....-.+-+++ ..|.-.-| .=.-++++=-+++|..+|.-||.. +..
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~---~~e 80 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQA---ASE 80 (130)
T ss_dssp -----------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 567888999999999999999988776555444433 22222211 223467777889999999888764 332
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Q 005989 303 LHRKLARDLSDMKSSFSNILKELERE 328 (666)
Q Consensus 303 ln~KL~~ELae~K~s~~~~~kelE~E 328 (666)
--+| |+..+.|..+..+||.+-
T Consensus 81 EKrk----LAqLQ~AY~~LfqeYd~~ 102 (130)
T 3cl3_D 81 EKRK----LAQLQVAYHQLFQEYDNH 102 (130)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHHHHH
Confidence 3333 456788888888888873
No 35
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=56.80 E-value=1.3e+02 Score=33.77 Aligned_cols=51 Identities=6% Similarity=0.119 Sum_probs=33.4
Q ss_pred hhhhhhHHHHHhhhhhHHhhhhhHhhhhcccchhhHHHHHHHHHHHHHHhhc
Q 005989 367 MKNADRLILHISESWLDERMQMKIAETQNSLSDKNTILDKLRLDIENFLQAK 418 (666)
Q Consensus 367 e~eeER~mLq~AEvWrEERvQMKL~eAk~~leeK~s~~dkL~~elE~FL~sk 418 (666)
=++-...|-||+- |--.|-|-+|--++.+|.+=....+.--++|-.-|..+
T Consensus 382 p~~~Gh~~w~~~~-~~~~~~~~dv~~~~a~~d~~~~~~s~~~~~ls~~me~R 432 (551)
T 2b5u_A 382 PMAGGHRMWQMAG-LKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESR 432 (551)
T ss_dssp TTSTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhhhhcc-chhhhhhhhhhhHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 3455678999977 88888888776666666553333455555666666554
No 36
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=55.76 E-value=27 Score=28.85 Aligned_cols=41 Identities=27% Similarity=0.439 Sum_probs=30.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005989 307 LARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIR 347 (666)
Q Consensus 307 L~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~ 347 (666)
|-.|+.+.+.-..+.-+=+|.|.++|.-||.+|-.+.+...
T Consensus 12 lkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n 52 (61)
T 3l4f_A 12 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44556666666666677788888888888888888877643
No 37
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=55.51 E-value=1.4e+02 Score=28.37 Aligned_cols=91 Identities=20% Similarity=0.318 Sum_probs=58.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhHHHHHhhhhhHHhhh
Q 005989 308 ARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQ 387 (666)
Q Consensus 308 ~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~mLq~AEvWrEERvQ 387 (666)
..+++++..-+.+.+.+|..|+..|.-.|..+..+-.++.+.-+-+= ++=-.|+--| .---..++
T Consensus 50 ~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLF--------------eEAN~MVa~a-r~~~~~~e 114 (154)
T 2ocy_A 50 KRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF--------------DEANNMVADA-RKEKYAIE 114 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH-HHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH-HHHHHHHH
Confidence 34566777888888899999999999999999999888877666541 1222333211 00012233
Q ss_pred hhHhhhhcccchhhHHHHHHHHHHHH
Q 005989 388 MKIAETQNSLSDKNTILDKLRLDIEN 413 (666)
Q Consensus 388 MKL~eAk~~leeK~s~~dkL~~elE~ 413 (666)
-|+..-+.++.+|...++.|+.+|..
T Consensus 115 ~r~~~L~~ql~e~~~~l~~lq~ql~~ 140 (154)
T 2ocy_A 115 ILNKRLTEQLREKDTLLDTLTLQLKN 140 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666777777777766654
No 38
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.27 E-value=1.2e+02 Score=27.29 Aligned_cols=80 Identities=20% Similarity=0.300 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhHH
Q 005989 228 LVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELE-----DERKLRKCSES 302 (666)
Q Consensus 228 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe-----~ERk~Rrr~E~ 302 (666)
.+.+-++|+-..+..|+.|..|-.+.+.....|-..|++-.. +-..+-..+.+.|..+..+|. -+|.++.--+.
T Consensus 30 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~-~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 108 (129)
T 3tnu_B 30 DLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ-RGELALKDARNKLAELEEALQKAKQDMARLLREYQEL 108 (129)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888888888888777777777765443 334444555555555555442 23344444445
Q ss_pred HHHHHH
Q 005989 303 LHRKLA 308 (666)
Q Consensus 303 ln~KL~ 308 (666)
||-||+
T Consensus 109 lnvKl~ 114 (129)
T 3tnu_B 109 MNTKLA 114 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 39
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=54.48 E-value=98 Score=28.23 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005989 227 ALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRK 306 (666)
Q Consensus 227 slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 306 (666)
.+|-.|+.|++.-+..+..|..|.+.+-.++ +..|-.|..||+.=|+.++.+-.-|..
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql----------------------~~~i~~Le~eL~e~r~~~q~a~~e~e~ 72 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQL----------------------KGHVSELEADLAEQQHLRQQAADDCEF 72 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999988887643332 233445666666666666666666666
Q ss_pred HHHHHHHh
Q 005989 307 LARDLSDM 314 (666)
Q Consensus 307 L~~ELae~ 314 (666)
|-.|+.+.
T Consensus 73 Lr~e~~~l 80 (120)
T 3i00_A 73 LRAELDEL 80 (120)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 40
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=54.12 E-value=1.6e+02 Score=28.48 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKER--NRIKAAVQSWKDELEDERKLRKCSESLHRK 306 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~--eki~aai~slk~ELe~ERk~Rrr~E~ln~K 306 (666)
++++..-+---+..+..|...+-.-.+++..|--+|..||..|.--.. --...-|.+|..||+.=|-.-.+++.-|++
T Consensus 43 ~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~ 122 (168)
T 3o0z_A 43 ISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKE 122 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555455556778888888999999999999999999998876544 233457899999999888888889999999
Q ss_pred HHHHHHH
Q 005989 307 LARDLSD 313 (666)
Q Consensus 307 L~~ELae 313 (666)
|..-|++
T Consensus 123 L~Ekl~~ 129 (168)
T 3o0z_A 123 AQDMLNH 129 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877765
No 41
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=53.78 E-value=1.6e+02 Score=28.32 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Q 005989 242 KIKELLQEKQTERQEVNDLMKQVA 265 (666)
Q Consensus 242 ~I~eL~~E~~s~~~ei~~l~kqla 265 (666)
.|..+.+||.....+-..-|.+|+
T Consensus 36 el~~f~~eRa~iE~eYak~L~kLa 59 (276)
T 2v0o_A 36 ELADFVRERATIEEAYSRSMTKLA 59 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666665444444444443
No 42
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.30 E-value=63 Score=30.29 Aligned_cols=91 Identities=23% Similarity=0.324 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------HHHHH
Q 005989 226 IALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERN--RIKAAVQSWKDEL--------EDERK 295 (666)
Q Consensus 226 ~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~e--ki~aai~slk~EL--------e~ERk 295 (666)
++..++=-.+|...+.+.++|..+......++..|...+++|+..+..-|.+ +|..-|.+|-+-| .++|+
T Consensus 17 l~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~ 96 (135)
T 2e7s_A 17 IASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARM 96 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666677888888899988888888889999999999999987765543 3444455444443 34688
Q ss_pred HhhhhHHHHHHHHHHHHHhhH
Q 005989 296 LRKCSESLHRKLARDLSDMKS 316 (666)
Q Consensus 296 ~Rrr~E~ln~KL~~ELae~K~ 316 (666)
.|-.+|.-|.+|-..|.|...
T Consensus 97 ~~~~~e~r~~~L~~ql~e~e~ 117 (135)
T 2e7s_A 97 EKYAIEILNKRLTEQLREKDM 117 (135)
T ss_dssp HHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999888887653
No 43
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=51.52 E-value=1.4e+02 Score=26.95 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 005989 285 SWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELER 327 (666)
Q Consensus 285 slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ 327 (666)
.|...|..|+-+-.-+|-...+|...-.+...-+.-+-..|+.
T Consensus 52 ~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 52 DLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555444444444444444444
No 44
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=50.60 E-value=33 Score=36.82 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005989 230 KALKMELDHSQTKIKELLQEKQTERQEVNDLMKQV 264 (666)
Q Consensus 230 ~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kql 264 (666)
..|..||...+.++++|+++.+..+.+++.+-.+|
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999988888888888776665555554444
No 45
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=48.07 E-value=2.2e+02 Score=28.28 Aligned_cols=64 Identities=11% Similarity=0.156 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 228 LVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELE 291 (666)
Q Consensus 228 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe 291 (666)
-+..|..+|...+.++.+|...-....-+++.+.|+...|+...+.---+++-..|-.+-+-|+
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnle 123 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFE 123 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3568889999999999999999889999999999999999998888777777777777777665
No 46
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=44.73 E-value=30 Score=29.23 Aligned_cols=42 Identities=31% Similarity=0.356 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKII 270 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~ 270 (666)
|--+..||+.+++.|+.|++|--..+-.|=+|---||-||.+
T Consensus 28 vgdiEqeLe~Ck~sIrrLE~evn~ErFrmIYLQTlLAkerks 69 (72)
T 1k1f_A 28 VGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLAKEKKS 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 677899999999999999999988888888888888776654
No 47
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=43.68 E-value=64 Score=26.67 Aligned_cols=29 Identities=38% Similarity=0.575 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 005989 285 SWKDELEDERKLRKCSESLHRKLARDLSD 313 (666)
Q Consensus 285 slk~ELe~ERk~Rrr~E~ln~KL~~ELae 313 (666)
.++.=|+.|.+.|+++|.+=+|+.+...|
T Consensus 25 ~~k~~le~eqraRk~LE~~vrk~~k~~n~ 53 (61)
T 3l4f_A 25 KMKKSLEEEQRARKDLEKLVRKVLKNMND 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34445788999999999999998876544
No 48
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.24 E-value=59 Score=34.69 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEV 257 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei 257 (666)
|.+|+.||...+.++.+|+++....+.++
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 33 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGM 33 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666665555555555544444333
No 49
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=39.49 E-value=1.7e+02 Score=32.29 Aligned_cols=43 Identities=12% Similarity=0.004 Sum_probs=32.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005989 223 VSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVA 265 (666)
Q Consensus 223 ~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqla 265 (666)
.+..-+|.+|+..|...+.+|.+++.--+.+..+|+...+.+.
T Consensus 117 s~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~ 159 (464)
T 1m1j_B 117 TTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIK 159 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Confidence 3445688899999999999998888777767777776666553
No 50
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=38.06 E-value=1.6e+02 Score=26.77 Aligned_cols=6 Identities=33% Similarity=0.667 Sum_probs=2.2
Q ss_pred HHHHHH
Q 005989 286 WKDELE 291 (666)
Q Consensus 286 lk~ELe 291 (666)
|+.|++
T Consensus 73 Lr~e~~ 78 (120)
T 3i00_A 73 LRAELD 78 (120)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 51
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=37.40 E-value=1.5e+02 Score=25.82 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhhhchHHHHHHHhcCcchhhhhhhhhhhHHHHHhh
Q 005989 335 LENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILHISE 379 (666)
Q Consensus 335 lE~vCdElAk~I~e~kaEve~lk~es~k~~~ee~eeER~mLq~AE 379 (666)
||.-..+++.+|...++|.+.|..+-.+-|++--..-+.++..-+
T Consensus 30 lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~d 74 (96)
T 3q8t_A 30 VEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDD 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344456788889999999998888777776555555555555444
No 52
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=36.73 E-value=64 Score=29.16 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005989 226 IALVKALKMELDHSQTKIKELLQEKQTERQEVNDL 260 (666)
Q Consensus 226 ~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l 260 (666)
++-+.||..||..++.+|.+|.++-...+-.++.|
T Consensus 3 ~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~l 37 (106)
T 4e61_A 3 LGSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTL 37 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578999999999999999988877666555554
No 53
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=35.78 E-value=2.8e+02 Score=31.11 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 005989 301 ESLHRKLARDLSDMKSSFSNIL 322 (666)
Q Consensus 301 E~ln~KL~~ELae~K~s~~~~~ 322 (666)
+.+.-++++|+++++.+|+-+|
T Consensus 408 ~a~~d~~~~~~s~~~~~ls~~m 429 (551)
T 2b5u_A 408 QAAFDAAAKEKSDADAALSSAM 429 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhhhhhhh
Confidence 3444455555555555555554
No 54
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.29 E-value=3e+02 Score=26.24 Aligned_cols=42 Identities=21% Similarity=0.111 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 005989 272 KDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSD 313 (666)
Q Consensus 272 K~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae 313 (666)
|+|--+.+...+.+++-++..=-.-.++++.-|..|+.=+-.
T Consensus 94 K~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 94 KNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777766555556677777777654433
No 55
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=34.32 E-value=2.8e+02 Score=25.58 Aligned_cols=67 Identities=22% Similarity=0.336 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005989 230 KALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLAR 309 (666)
Q Consensus 230 ~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ 309 (666)
.-|+.+|-+|+.-..+-+.+--+-.+.+..|+.-|.+||+.- + .-|+.+++|+ +.||.+|-+
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~----q----~~vqeLqgEI----------~~Lnq~Lq~ 89 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG----Q----KKVEELEGEI----------TTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----HHHHHHHHHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----HHHHHHHHHH----------HHHHHHHHH
Confidence 457888999998888888777788888999999998887733 1 1244444443 456776665
Q ss_pred HHHHh
Q 005989 310 DLSDM 314 (666)
Q Consensus 310 ELae~ 314 (666)
-++++
T Consensus 90 a~ae~ 94 (121)
T 3mq7_A 90 ASAEV 94 (121)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 56
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=32.08 E-value=4.6e+02 Score=27.36 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=11.4
Q ss_pred HHHHHHhhhhchHHHHHHHh
Q 005989 338 LCDEFAKGIRDYEEEVRLLR 357 (666)
Q Consensus 338 vCdElAk~I~e~kaEve~lk 357 (666)
-..+|-.+|.+.++||+++|
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 451 EITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33445555666666666655
No 57
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=32.00 E-value=3.1e+02 Score=25.31 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=35.9
Q ss_pred cccHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 005989 223 VSDIALVKAL--KMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKI 269 (666)
Q Consensus 223 ~s~~slv~aL--~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~ 269 (666)
...++++.|| --||-.++..+.+|.++-....+++..|-..+..-+.
T Consensus 55 ~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~ 103 (138)
T 3hnw_A 55 AELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQI 103 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677775 4689999999999999888888888888777755444
No 58
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=31.61 E-value=3e+02 Score=25.21 Aligned_cols=38 Identities=16% Similarity=0.359 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 005989 285 SWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERE 328 (666)
Q Consensus 285 slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~E 328 (666)
-|+.|+|.| +|.+.+|.-.=|-|+.+++.+-.++++.-
T Consensus 61 qLkse~e~E------~ae~k~KYD~~lqe~ese~~~kkK~le~~ 98 (115)
T 3vem_A 61 ILKAELERK------MAEVQAEFRRKFHEVEAEHNTRTTKIEKD 98 (115)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665 78888888888888888888777777654
No 59
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=31.39 E-value=1.6e+02 Score=26.27 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005989 236 LDHSQTKIKELLQEKQTERQEVNDLMKQV 264 (666)
Q Consensus 236 L~~Ar~~I~eL~~E~~s~~~ei~~l~kql 264 (666)
|--.-.-|+.|.+|..+|++|+...-.++
T Consensus 9 LkIkt~~vkRL~KE~~~Y~kE~~~q~~ri 37 (108)
T 1h7c_A 9 IKIKTGVVRRLVKERVMYEKEAKQQEEKI 37 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455668889999999998877655554
No 60
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=31.05 E-value=2.9e+02 Score=24.71 Aligned_cols=89 Identities=20% Similarity=0.327 Sum_probs=58.7
Q ss_pred CcccchHHHHHHHHHhcc--ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 200 YNLKTSTELLTVLNRIWS--LEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERN 277 (666)
Q Consensus 200 ~~L~tS~EllkVLnrIw~--leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE~e 277 (666)
++|++|=++. .|||=| --..+.++-+.|..|=+-|---+.++=..+++....+-..+.|-.+|+-=+-
T Consensus 7 ~~l~~sv~if--~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R~~yE~LQDkL~qi~e-------- 76 (98)
T 3f1i_H 7 KALQNAVTTF--VNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRD-------- 76 (98)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHH--HHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 3556665555 577765 3334566667788888888777777777777666666666666555543222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH
Q 005989 278 RIKAAVQSWKDELEDERKLRKCSE 301 (666)
Q Consensus 278 ki~aai~slk~ELe~ERk~Rrr~E 301 (666)
.++||+.|++|= ..|+|+.+|
T Consensus 77 -AR~ALdaLR~eH--~~Klrr~ae 97 (98)
T 3f1i_H 77 -ARGALSALREEH--REKLRRAAE 97 (98)
T ss_dssp -HHHHHHHHHHHH--HHHHHHHHC
T ss_pred -HHHHHHHHHHHH--HHHHHHHhc
Confidence 467899999874 677888765
No 61
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=30.79 E-value=1.7e+02 Score=25.95 Aligned_cols=73 Identities=21% Similarity=0.240 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005989 265 AEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAK 344 (666)
Q Consensus 265 aEeK~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk 344 (666)
||+.++-|..+-++++..|.-.+..++.=-=++. -+.=+-.|.+.||.+|+-| +.
T Consensus 14 aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~------------------Qv~IY~~DF~aERadREkl-------~~ 68 (94)
T 3jsv_C 14 AEEALVAKQELIDKLKEEAEQHKIVMETVPVLKA------------------QADIYKADFQAERHAREKL-------VE 68 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH-------Hh
Confidence 5666666555555555555544444432222222 2333567899999999865 55
Q ss_pred hhhchHHHHHHHhcCcch
Q 005989 345 GIRDYEEEVRLLRHKPEM 362 (666)
Q Consensus 345 ~I~e~kaEve~lk~es~k 362 (666)
++.++...++.|.+...+
T Consensus 69 eKe~L~~ql~~lq~q~~~ 86 (94)
T 3jsv_C 69 KKEYLQEQLEQLQREFNK 86 (94)
T ss_dssp TTSHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666777777665443
No 62
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=29.91 E-value=87 Score=32.87 Aligned_cols=44 Identities=23% Similarity=0.303 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005989 227 ALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKII 270 (666)
Q Consensus 227 slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~ 270 (666)
.+...|+..|+.+|.-..++++.--+-.+.+--|+.-|.-++..
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ 440 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH
Confidence 66788999999999999999888877778887777777555543
No 63
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=29.44 E-value=3.1e+02 Score=24.53 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005989 230 KALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKII 270 (666)
Q Consensus 230 ~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~ 270 (666)
.-|+.+|-+|+.-..+-+.+--.-.+.+..|+--|..||+.
T Consensus 21 ~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq 61 (99)
T 3ni0_A 21 HLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQ 61 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56888999999888888888888889999999999888874
No 64
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.26 E-value=2.7e+02 Score=31.42 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005989 279 IKAAVQSWKDELEDERKLRKCSESLHRKLARDL 311 (666)
Q Consensus 279 i~aai~slk~ELe~ERk~Rrr~E~ln~KL~~EL 311 (666)
+...|..|+.+|++=.+.++-++..-+-+..+|
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~L 94 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEIL 94 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence 344555666666665666666666554444433
No 65
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=26.31 E-value=4.6e+02 Score=25.53 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005989 227 ALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEK--IIRKDKERNRIKAAVQSWKDELEDE 293 (666)
Q Consensus 227 slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK--~~wK~KE~eki~aai~slk~ELe~E 293 (666)
.|+.-|+..+.. ...|..+.+|+.....+-..-|.+|+.-- ..-+.-+.--+..+.+.|..+++..
T Consensus 12 ~l~~r~~~g~~~-~~el~~f~keRa~iE~~Yak~L~kL~~~~~~~~~~~~~~gs~~~aw~~~~~~~e~~ 79 (290)
T 3i2w_A 12 RTTKRIEDGYKL-CNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKGPEYGTTEAAWKGVLTESERI 79 (290)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHH
Confidence 334444444432 34455666676665544444444444310 0011112334555555565555543
No 66
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=26.28 E-value=2.4e+02 Score=23.62 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005989 232 LKMELDHSQTKIKELLQEKQTERQEVNDL 260 (666)
Q Consensus 232 L~~EL~~Ar~~I~eL~~E~~s~~~ei~~l 260 (666)
|..|++..+..|.+|+.+.+..+.+++..
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~q 31 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQ 31 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777766666555554443
No 67
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.63 E-value=84 Score=24.86 Aligned_cols=33 Identities=15% Similarity=0.369 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 005989 225 DIALVKALKMELDHSQTKIKELLQEKQTERQEV 257 (666)
Q Consensus 225 ~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei 257 (666)
+.+=|-+|+.|++..+.+|.+|.++....+.++
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346689999999999999999998887666544
No 68
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=25.27 E-value=1.5e+03 Score=31.00 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHH
Q 005989 236 LDHSQTKIKELLQEKQTE-------RQEVNDLMKQVAEEKI 269 (666)
Q Consensus 236 L~~Ar~~I~eL~~E~~s~-------~~ei~~l~kqlaEeK~ 269 (666)
|..|..+|.+|..+-... .++.+.+|.++..++.
T Consensus 1929 L~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~ 1969 (3245)
T 3vkg_A 1929 LRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQ 1969 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666555544332 3455667777766544
No 69
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=25.01 E-value=3e+02 Score=22.88 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTER 254 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~ 254 (666)
|.+|+.|++.|..++.++........
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e 33 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAE 33 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999888887766433
No 70
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=24.87 E-value=1.8e+02 Score=32.36 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=0.0
Q ss_pred HHHhhhhchHHHHHHHhcCcch
Q 005989 341 EFAKGIRDYEEEVRLLRHKPEM 362 (666)
Q Consensus 341 ElAk~I~e~kaEve~lk~es~k 362 (666)
.|+.+|+++.++|..|..++.+
T Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~ 430 (575)
T 2i1j_A 409 KLEDEIRAKQEEVSRIQQEVEL 430 (575)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788888888888776654
No 71
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=24.23 E-value=4.2e+02 Score=24.38 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q 005989 285 SWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVR 354 (666)
Q Consensus 285 slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve 354 (666)
.+.+||-..+.--..++.....+.+|+.+.|.-+..+--.+|.-++.-+=+.+--++|-+.|...+++++
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666677777777666666555555444444344444444444444444443
No 72
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=24.07 E-value=3.5e+02 Score=27.92 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 005989 402 TILDKLRLDIENFLQA 417 (666)
Q Consensus 402 s~~dkL~~elE~FL~s 417 (666)
..++.|+..|+.|...
T Consensus 217 ~~~e~Lr~~L~p~~~~ 232 (307)
T 2l7b_A 217 AWGERLRARMEEMGSR 232 (307)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHH
Confidence 4466666666666543
No 73
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.22 E-value=4.3e+02 Score=23.70 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005989 233 KMELDHSQTKIKELLQEKQTERQEVNDLMKQ 263 (666)
Q Consensus 233 ~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kq 263 (666)
..+|..++..|.+|-..-++-.-+|+.+..+
T Consensus 30 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~ 60 (131)
T 3tnu_A 30 SELVQSGKSEISELRRTMQNLEIELQSQLSM 60 (131)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556777777777777777777777666544
Done!