Query 005989
Match_columns 666
No_of_seqs 105 out of 119
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 13:00:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005989.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005989hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gs9a_ a.24.1.1 (A:) Apolipop 70.9 13 0.00094 31.6 10.1 31 295-325 71-101 (144)
2 d2efla1 a.238.1.4 (A:1-288) Fo 59.4 57 0.0041 28.7 16.7 80 283-362 99-178 (288)
3 d2efla1 a.238.1.4 (A:1-288) Fo 51.1 77 0.0056 27.7 15.2 10 409-418 263-272 (288)
4 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 44.2 15 0.0011 28.8 4.8 39 229-267 28-66 (67)
5 d1j1ja_ a.118.16.1 (A:) Transl 21.1 2.3E+02 0.017 25.0 9.9 42 279-320 3-44 (217)
6 d1gs9a_ a.24.1.1 (A:) Apolipop 19.3 98 0.0071 25.8 6.3 27 299-325 97-123 (144)
7 d1h7ca_ a.7.5.1 (A:) Tubulin c 16.4 2.6E+02 0.019 22.6 9.5 25 240-264 10-34 (103)
8 d2p90a1 c.56.8.1 (A:6-274) Hyp 15.4 1.8E+02 0.013 26.4 7.7 56 201-267 205-260 (269)
9 d1nkpa_ a.38.1.1 (A:) Myc prot 14.5 1.3E+02 0.0097 23.0 5.6 36 225-260 50-85 (88)
10 d1fxka_ a.2.5.1 (A:) Prefoldin 14.1 98 0.0071 24.7 4.8 97 226-323 7-107 (107)
No 1
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=70.94 E-value=13 Score=31.63 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=19.2
Q ss_pred HHhhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q 005989 295 KLRKCSESLHRKLARDLSDMKSSFSNILKEL 325 (666)
Q Consensus 295 k~Rrr~E~ln~KL~~ELae~K~s~~~~~kel 325 (666)
++.+.++.|-.+|..+|.+++.-+..++.++
T Consensus 71 ~l~~~~e~lr~~l~~~lee~r~kl~~~~eel 101 (144)
T d1gs9a_ 71 RLSKELQAAQARLGADMEDVRGRLVQYRGEV 101 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677777777777777666555554433
No 2
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.43 E-value=57 Score=28.68 Aligned_cols=80 Identities=13% Similarity=0.170 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhcCcch
Q 005989 283 VQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDEFAKGIRDYEEEVRLLRHKPEM 362 (666)
Q Consensus 283 i~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~~~kelE~ErkaRellE~vCdElAk~I~e~kaEve~lk~es~k 362 (666)
++.+..-+.+-++.|+.+...-.|+.+++......+.++.+.|..--+.-+-+...+..+.....--+.+++.++....+
T Consensus 99 ~~~l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~k~~~ 178 (288)
T d2efla1 99 IVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQI 178 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHH
Confidence 34444445556677777777788888888888888888777776554444444444444444455555666655554443
No 3
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.13 E-value=77 Score=27.73 Aligned_cols=10 Identities=20% Similarity=0.119 Sum_probs=4.6
Q ss_pred HHHHHHHhhc
Q 005989 409 LDIENFLQAK 418 (666)
Q Consensus 409 ~elE~FL~sk 418 (666)
.|++.|+...
T Consensus 263 ~D~~~fi~~~ 272 (288)
T d2efla1 263 NDSQLVIEAY 272 (288)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 3444444444
No 4
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.23 E-value=15 Score=28.85 Aligned_cols=39 Identities=31% Similarity=0.389 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 005989 229 VKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEE 267 (666)
Q Consensus 229 v~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEe 267 (666)
|-.+..||+++++.|+.|+++--..+-.+-+|---||-|
T Consensus 28 V~diE~eLerCk~~irrLeqel~~ErF~~iYLQt~LA~e 66 (67)
T d1k1fa_ 28 VGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLAKE 66 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 788999999999999999999888777777777666543
No 5
>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.11 E-value=2.3e+02 Score=25.00 Aligned_cols=42 Identities=10% Similarity=0.181 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHH
Q 005989 279 IKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSN 320 (666)
Q Consensus 279 i~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELae~K~s~~~ 320 (666)
|.+++.+++++|+.+-..|.++-.+-+.+...-..+-.++.+
T Consensus 3 ~~~~F~~~~~~Ld~~~d~RE~lik~sRdI~~~sk~~I~~Lhr 44 (217)
T d1j1ja_ 3 VSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQG 44 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999998888888777666666654
No 6
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=19.29 E-value=98 Score=25.77 Aligned_cols=27 Identities=11% Similarity=0.320 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHH
Q 005989 299 CSESLHRKLARDLSDMKSSFSNILKEL 325 (666)
Q Consensus 299 r~E~ln~KL~~ELae~K~s~~~~~kel 325 (666)
+++.+..+|...+.+++..+.-++.+|
T Consensus 97 ~~eel~~~~~~~~ee~r~~l~p~~eel 123 (144)
T d1gs9a_ 97 YRGEVQAMLGQSTEELRVRLASHLRKL 123 (144)
T ss_dssp HHHHHHTSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333
No 7
>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.36 E-value=2.6e+02 Score=22.65 Aligned_cols=25 Identities=12% Similarity=0.291 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Q 005989 240 QTKIKELLQEKQTERQEVNDLMKQV 264 (666)
Q Consensus 240 r~~I~eL~~E~~s~~~ei~~l~kql 264 (666)
-.-|+.|.+|...|++|+.....++
T Consensus 10 tgvvkRL~KE~~~Y~kE~~~q~~k~ 34 (103)
T d1h7ca_ 10 TGVVRRLVKERVMYEKEAKQQEEKI 34 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999998887665555
No 8
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=15.41 E-value=1.8e+02 Score=26.36 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=40.9
Q ss_pred cccchHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 005989 201 NLKTSTELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEE 267 (666)
Q Consensus 201 ~L~tS~EllkVLnrIw~leeq~~s~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEe 267 (666)
+-+++..||.+|+.|++++=. +..|..+-+..+.+|++|+++- .|+..++.+|.+.
T Consensus 205 dP~AA~~lL~~l~~~~gl~id-------~~~L~e~Ae~~e~~i~~l~e~~----~e~~~~v~~LE~~ 260 (269)
T d2p90a1 205 YPAATLKLLQSIADSADLNLP-------LLALERDAEKVHRQLMEQTEES----SEIQRVVGALEQQ 260 (269)
T ss_dssp CHHHHHHHHHHHHHHHTCCCC-------CHHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCC-------hHHHHHHHHHHHHHHHHHHhhC----HHHHHHHHHHHHh
Confidence 457889999999999986521 4678888888888888888765 3455555555443
No 9
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.52 E-value=1.3e+02 Score=23.04 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005989 225 DIALVKALKMELDHSQTKIKELLQEKQTERQEVNDL 260 (666)
Q Consensus 225 ~~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l 260 (666)
++..|.-|+.+++.....+..|.++.....+++..|
T Consensus 50 A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 50 ATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 10
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=14.09 E-value=98 Score=24.74 Aligned_cols=97 Identities=12% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005989 226 IALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKE----RNRIKAAVQSWKDELEDERKLRKCSE 301 (666)
Q Consensus 226 ~slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ei~~l~kqlaEeK~~wK~KE----~eki~aai~slk~ELe~ERk~Rrr~E 301 (666)
+.-+..|+.+|+....++.+|..+.+.+..-++. +..+-++...+|.-= ..-+..++..|...++.=..-=++++
T Consensus 7 ~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~e-L~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~ 85 (107)
T d1fxka_ 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEE-LSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIE 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q 005989 302 SLHRKLARDLSDMKSSFSNILK 323 (666)
Q Consensus 302 ~ln~KL~~ELae~K~s~~~~~k 323 (666)
.-=..|-.+|.+.+..+.++++
T Consensus 86 ~q~~~l~~~l~~~~~~l~~~~k 107 (107)
T d1fxka_ 86 RQEERVMKKLQEMQVNIQEAMK 107 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Done!