BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005990
(666 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Query: 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQ-- 78
E + N + ++ ++++A++ + L +P +A A K + D+A+ Q
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 79 ------SSQKFTFDFNYLKAYCLYRQNRLDEALE----SLKIQENNPATMLLKSQILYRS 128
S++ + +N AY Y+Q DEA+E +L++ + Y+
Sbjct: 62 LELDPRSAEAW---YNLGNAY--YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 116
Query: 129 GEMDACVEFYQK 140
G+ D +E+YQK
Sbjct: 117 GDYDEAIEYYQK 128
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 63 ALIKADNIDDALSTIQSSQKFTFDFNYLKAY-----CLYRQNRLDEALE----SLKIQEN 113
A K + D+A+ Q + D N +A+ Y+Q DEA+E +L++ N
Sbjct: 18 AYYKQGDYDEAIEYYQKA--LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 114 NPATMLLKSQILYRSGEMDACVEFYQK 140
N Y+ G+ D +E+YQK
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQK 102
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 94 CLYRQNRLDEALE----SLKIQENNPATMLLKSQILYRSGEMDACVEFYQK 140
Y+Q DEA+E +L++ NN Y+ G+ D +E+YQK
Sbjct: 18 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 94 CLYRQNRLDEALE----SLKIQENNPATMLLKSQILYRSGEMDACVEFYQK 140
Y+Q DEA+E +L++ NN Y+ G+ D +E+YQK
Sbjct: 18 AYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 94 CLYRQNRLDEALE----SLKIQENNPATMLLKSQILYRSGEMDACVEFYQK 140
Y+Q DEA+E +L++ NN Y+ G+ D +E+YQK
Sbjct: 52 AYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102
>pdb|3IFZ|A Chain A, Crystal Structure Of The First Part Of The Mycobacterium
Tuberculosis Dna Gyrase Reaction Core: The Breakage And
Reunion Domain At 2.7 A Resolution
pdb|3IFZ|B Chain B, Crystal Structure Of The First Part Of The Mycobacterium
Tuberculosis Dna Gyrase Reaction Core: The Breakage And
Reunion Domain At 2.7 A Resolution
Length = 508
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 442 LDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVT 501
LD I++++ D++L VI++ +++LR E +H+ LVK +++ ++ L+
Sbjct: 358 LDQLIRYYV-----DHQLDVIVRRT-TYRLRKANER--AHILRGLVKALDALDEVIALIR 409
Query: 502 TSAHVDVDKA 511
S VD+ +A
Sbjct: 410 ASETVDIARA 419
>pdb|3ILW|A Chain A, Structure Of Dna Gyrase Subunit A N-Terminal Domain
pdb|3ILW|B Chain B, Structure Of Dna Gyrase Subunit A N-Terminal Domain
Length = 470
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 442 LDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVT 501
LD I++++ D++L VI++ +++LR E +H+ LVK +++ ++ L+
Sbjct: 328 LDQLIRYYV-----DHQLDVIVRRT-TYRLRKANER--AHILRGLVKALDALDEVIALIR 379
Query: 502 TSAHVDVDKA 511
S VD+ +A
Sbjct: 380 ASETVDIARA 389
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSS 80
E+L T N + + ++E A+K Q + NPS+ + +A ++ + AL ++
Sbjct: 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG--DAT 64
Query: 81 QKFTFDFNYLKAYCLYRQNRLDEALESLK 109
+ D Y+K Y YR+ + AL +
Sbjct: 65 RAIELDKKYIKGY--YRRAASNMALGKFR 91
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSS 80
E+L T N + + ++E A+K Q + NPS+ + +A ++ + AL+ ++
Sbjct: 22 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALN--DAT 79
Query: 81 QKFTFDFNYLKAYCLYRQNRLDEALESLK 109
+ D Y+K Y YR+ + AL +
Sbjct: 80 RAIELDKKYIKGY--YRRAASNMALGKFR 106
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 92 AYCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKID 147
A CL + R DEA+ I +E NP + + + G+MD+ + ++K QK D
Sbjct: 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSS 80
E+L T N + + ++E A+K Q + NPS+ + +A ++ + AL ++
Sbjct: 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG--DAT 71
Query: 81 QKFTFDFNYLKAYCLYRQNRLDEALESLK 109
+ D Y+K Y YR+ + AL +
Sbjct: 72 RAIELDKKYIKGY--YRRAASNMALGKFR 98
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 23/192 (11%)
Query: 197 YTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDI 256
Y +A++ A R+ +E L +N ED+ E I+++ + + L N + GA+ DI
Sbjct: 205 YDKADESFTKAARLFEEQLDKNN--EDEKLKEKLAISLEHTGIFKFLKN--DPLGAHEDI 260
Query: 257 IKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQN-FQLARVLDLRLSPKQ 315
K VN+ + + +L DR + N F A LD
Sbjct: 261 KKA-----IELFPRVNSYIYM--------ALIMADRNDSTEYYNYFDKALKLD-----SN 302
Query: 316 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLG 375
++Y +R + DQA + ++ P+++ P + A + RENK E L
Sbjct: 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362
Query: 376 QFAEKLPDKSKI 387
+ K P+ ++
Sbjct: 363 EAKRKFPEAPEV 374
>pdb|2BE9|A Chain A, Crystal Structure Of The Ctp-Liganded (T-State) Aspartate
Transcarbamoylase From The Extremely Thermophilic
Archaeon Sulfolobus Acidocaldarius
Length = 300
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 518 LKPLPGLNGVDVDSLEKTSGAKHVESASY 546
L PLP +N +D ++KT+ AK+ E ASY
Sbjct: 258 LHPLPRVNEID-RKVDKTTKAKYFEQASY 285
>pdb|1PG5|A Chain A, Crystal Structure Of The Unligated (t-state) Aspartate
Transcarbamoylase From The Extremely Thermophilic
Archaeon Sulfolobus Acidocaldarius
Length = 299
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 518 LKPLPGLNGVDVDSLEKTSGAKHVESASY 546
L PLP +N +D ++KT+ AK+ E ASY
Sbjct: 257 LHPLPRVNEID-RKVDKTTKAKYFEQASY 284
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,455,204
Number of Sequences: 62578
Number of extensions: 515107
Number of successful extensions: 1355
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1346
Number of HSP's gapped (non-prelim): 23
length of query: 666
length of database: 14,973,337
effective HSP length: 105
effective length of query: 561
effective length of database: 8,402,647
effective search space: 4713884967
effective search space used: 4713884967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)