BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005990
(666 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O76094|SRP72_HUMAN Signal recognition particle 72 kDa protein OS=Homo sapiens GN=SRP72
PE=1 SV=3
Length = 671
Score = 280 bits (715), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 210/635 (33%), Positives = 348/635 (54%), Gaps = 42/635 (6%)
Query: 23 LFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQK 82
L++ +NR+ + +F +A+K +++L N D A+ CKVV LI+ + +AL+ I + K
Sbjct: 14 LWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVINTHTK 73
Query: 83 FTFD--FNYLKAYCLYRQNRLDEALESLKIQENNPATMLLK---SQILYRSGEMDACVEF 137
+ ++ KAYC YR NR++ AL++ I+ N T LK Q+LYR D C+
Sbjct: 74 VLANNSLSFEKAYCEYRLNRIENALKT--IESANQQTDKLKELYGQVLYRLERYDECLAV 131
Query: 138 YQKLQKSKIDSLEINFVAGL--ISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMN 195
Y+ L ++ D + L + A +++ + ++L ++ + EL YNTAC+L
Sbjct: 132 YRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQ-EGTHELCYNTACALIGQG 190
Query: 196 KYTEAEQLLLTARRIGQETLTDD-NFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYT 254
+ +A ++L A + + +L++D + E+D + ELA I Q+AY+ QL G T+EA Y
Sbjct: 191 QLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYN 250
Query: 255 DIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPK 314
IIK D AV NN++ + ++V DS KK+ A ++ +LS K
Sbjct: 251 QIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKKVKLTN---------AEGVEFKLSKK 301
Query: 315 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELL 374
Q +AI N+ LL ++ N+ +Q R++ A+L P+ ++P+L+QAA L RE + KA ELL
Sbjct: 302 QLQAIEFNKALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIELL 361
Query: 375 GQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGD 434
+F+++ P+ + I L AQ+ + + A L I +++H P V+ LV + D
Sbjct: 362 QEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEED 421
Query: 435 IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH-GSI 493
ID A V AI+W+ N + +++EAA+FKL++GR+++A ++L K + I
Sbjct: 422 IDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKDI 481
Query: 494 EALVGLVTTSAHVDVDKAESYEKRLKPLPGLN-GVDVDSLEKTSGAKHVESASYFEVNEA 552
L L++ + VD +KA++ K L ++ VDV++LE ++GA ++ ++
Sbjct: 482 HTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALENSAGATYIRKKGGKVTGDS 541
Query: 553 ----HGEGKNKDKAKKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRA 608
G+G D KKK+K+K + PK +DP PDPERWLP RERS YR R+K K+
Sbjct: 542 QPKEQGQG---DLKKKKKKKKGKLPKNYDPK---VTPDPERWLPMRERSYYRGRKKGKKK 595
Query: 609 AQV-RGSQGAVVREKHDAGAAGASSNSTSSQATSS 642
Q+ +G+QGA AGASS +S+ SS
Sbjct: 596 DQIGKGTQGAT---------AGASSELDASKTVSS 621
>sp|P33731|SRP72_CANFA Signal recognition particle 72 kDa protein OS=Canis familiaris
GN=SRP72 PE=1 SV=3
Length = 671
Score = 279 bits (714), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 210/635 (33%), Positives = 348/635 (54%), Gaps = 42/635 (6%)
Query: 23 LFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQK 82
L++ +NR+ + +F +A+K +++L N D A+ CKVV LI+ + +AL+ I + K
Sbjct: 14 LWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVINTHTK 73
Query: 83 FTFD--FNYLKAYCLYRQNRLDEALESLKIQENNPATMLLK---SQILYRSGEMDACVEF 137
+ ++ KAYC YR NR++ AL++ I+ N T LK Q+LYR D C+
Sbjct: 74 VLANNSLSFEKAYCEYRLNRIENALKT--IESANQQTDKLKELYGQVLYRLERYDECLAV 131
Query: 138 YQKLQKSKIDSLEINFVAGL--ISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMN 195
Y+ L ++ D + L + A +++ + ++L ++ + EL YN AC+L
Sbjct: 132 YRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQ-EGTHELCYNAACALIGQG 190
Query: 196 KYTEAEQLLLTARRIGQETLTDD-NFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYT 254
+ ++A ++L A + + +L++D + E+D + ELA I Q+AY+ QL G T+EA Y
Sbjct: 191 QLSQAMKILQKAEDLCRRSLSEDSDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYN 250
Query: 255 DIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPK 314
IIK D AV NN++ + ++V DS KK+ A ++ +LS K
Sbjct: 251 QIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKKVKLTN---------AEGVEFKLSKK 301
Query: 315 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELL 374
Q +AI N+ LL ++ N+ +Q R++ A+L P+ ++P+L+QAA L RE + KA ELL
Sbjct: 302 QLQAIEFNKALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIELL 361
Query: 375 GQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGD 434
+F+++ P+ + I L AQ+ + + A L I +++H P V+ LV + D
Sbjct: 362 QEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEED 421
Query: 435 IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH-GSI 493
ID A V AI+W+ N + + +++EAA+FKL++GR+++A E+L K + I
Sbjct: 422 IDSAIEVFTQAIQWYQNHQPKSSAHLSLIREAANFKLKYGRKKEAISDLEQLWKQNPKDI 481
Query: 494 EALVGLVTTSAHVDVDKAESYEKRLKPLPGLN-GVDVDSLEKTSGAKHVESASYFEVNEA 552
L L++ + VD +KA++ K L ++ VDV++LE + GA ++ ++
Sbjct: 482 HTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALENSPGATYIRKKGGKVAGDS 541
Query: 553 ----HGEGKNKDKAKKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRA 608
G+G D KKK+K+K + PK +DP PDPERWLP RERS YR R+K K+
Sbjct: 542 QPKEQGQG---DLKKKKKKKKGKLPKNYDPK---VTPDPERWLPMRERSYYRGRKKGKKK 595
Query: 609 AQV-RGSQGAVVREKHDAGAAGASSNSTSSQATSS 642
Q+ +G+QGA AGASS +S+ SS
Sbjct: 596 DQIGKGTQGAT---------AGASSELDASKTVSS 621
>sp|Q54EP7|SRP72_DICDI Signal recognition particle 72 kDa protein homolog OS=Dictyostelium
discoideum GN=srp72 PE=3 SV=1
Length = 672
Score = 221 bits (562), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 183/652 (28%), Positives = 312/652 (47%), Gaps = 86/652 (13%)
Query: 20 IEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQS 79
+E LF L+ +I S+F++A++V +++LS N +D +A +CKV+ L++ N +A+ +
Sbjct: 9 LEQLFKELDEYIINSQFKKAIRVCNKILSVNGNDSEAFQCKVICLMQLSNFTEAIECFKK 68
Query: 80 SQKF-TFDFNYLKAYCLYRQNRLDEALESLKIQENNPATML-LKSQILYRSGEMDACVEF 137
++ + F Y +YCLY + EAL L+ Q + L L++QI Y+ +
Sbjct: 69 PEQIQSMQFEY--SYCLYSTAKYQEALTQLEKQSSKETKSLELEAQIYYKLENYQKTISI 126
Query: 138 YQKL--QKSKIDSLEI--NFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAE 193
Y+ L + DS+E N A + AG+ +E Q+ L+ + + T + ELA+N+AC
Sbjct: 127 YESLLSKPGYSDSIEFITNLCAVYLDAGKFNECQELLNKNKSQQTKTHELAFNSACLAIS 186
Query: 194 MNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAY 253
N AE L A++I ++L D F+E++I+ E I VQL YVQQ+ GN +++ Y
Sbjct: 187 KNDTKTAETQLKLAKKICTDSLKKDGFSEEEIKEEQTSIDVQLGYVQQICGNLEKSLEQY 246
Query: 254 TDIIKRNLADESSFAVAVNNLVALKG----------PKDVN---DSLKKLDRIKEKDMQN 300
+++++ + D ++ VA NN ++++ PK+ DSLK L
Sbjct: 247 QNVLEQQVGDSATL-VATNNSISVRSILQSDQWSTQPKEYTHAMDSLKSL---------- 295
Query: 301 FQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPL------ 354
L RL+ KQ++ I N LLL+ K+ Q EL+ L + +
Sbjct: 296 --LTEAESTRLNSKQKKVINYNLCLLLVQLKKVSQCEELIKTLKSKYGQQQQQVDTSFVE 353
Query: 355 ---LLQAAVLVRENKAGKAEELL-------GQFAEKLPDKSKIILLARAQVAAAANHPFI 404
++Q ++L++E K AE+LL G +L ++I LL VA A N
Sbjct: 354 DLDIIQVSLLIKEKKFKDAEKLLLKNNTTTGSIKSQLL-LAQIYLLDNNNVAKALN---- 408
Query: 405 AAESLAKI-PDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWW--LNAMTEDNKLSV 461
L K+ + P VAT VAL E++GD++ A LD I + +D ++ V
Sbjct: 409 ---VLEKLDSSVSLRPGIVATKVALYEKSGDLEKAVNSLDDLISIFDKQKKSEKDEEIYV 465
Query: 462 -IMQEAASFKLRHGREEDASHLFEELVKTH-GSIEALVGLVTTSAHVDVDKAESYEKRLK 519
+++ + +FKL+H + +AS +F+ ++K + + AL + ++H D ++ YE +L
Sbjct: 466 NLLKASGNFKLKHHKYREASDMFDRVLKINPNDLIALPSYIVATSHFDPSLSQKYEGKLP 525
Query: 520 PLPGLNGVDVDSLEKTSGAKHVESASYFEVNEAHGEGKN---------------KDKAKK 564
+ + +D+D +EK FE E N K A +
Sbjct: 526 NIKFESKIDIDLIEKYGLT--------FEKKLNLNEDSNSSSPTTTTTTTTKSTKPTATE 577
Query: 565 KRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRAAQVRGSQG 616
K K K P PDP RWLPK +R++ + R K ++G QG
Sbjct: 578 VVKIKKSKKKLPKVMKPNYVPDPGRWLPKWQRANAKAARSKKNKDIIKGPQG 629
>sp|P49965|SRP72_SCHMA Signal recognition particle 72 kDa protein OS=Schistosoma mansoni
GN=SRP72 PE=3 SV=1
Length = 707
Score = 176 bits (445), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 188/676 (27%), Positives = 302/676 (44%), Gaps = 94/676 (13%)
Query: 20 IEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQS 79
++ ++ LN+ +++ + ++ ++L+ P + A +CKVVALI+A+ +D LS ++
Sbjct: 9 LQSAYSDLNKACSAQAYDKIINISGKILTKFPGETKAFQCKVVALIRAEKYEDCLSFLKK 68
Query: 80 SQKFTFDFNYLKAYCLYRQNRLDEALESLKIQE-NNPATMLLKSQILYRSGEMDACVEFY 138
+ + + KAY YR NRL EA ++L+ +E ++ LK+Q+LYR G+ +
Sbjct: 69 NPTLSSHVIFEKAYVEYRLNRLTEAAKTLESEEASDSKVQELKAQVLYRKGDFAGAYAYL 128
Query: 139 QKLQKSKIDSLEINFVAGL--ISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNK 196
+ + ++ D +A L ++A + LD L V +E +N AC
Sbjct: 129 RTVIRNSQDDYSEERLANLTAVAAAESCFNNANLD-LDVNP-QMYEGKFNLACYHLGRGD 186
Query: 197 YTEAEQLLLTARRIGQETLTDD-NFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTD 255
A + L A L++D E++ ELAPI VQ AY+ QL +EA Y
Sbjct: 187 CYLASRSLDDAENTCNLCLSEDPELTEEERNEELAPIRVQRAYILQLNKEEEEANQVYQS 246
Query: 256 IIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQ 315
+I++ +D + AVA NN+V + +++ DS K RIK Q +L +Q
Sbjct: 247 VIRQRASDPALLAVAANNIVCINQDQNIFDSRK---RIKMASTDGLQ------FKLFSRQ 297
Query: 316 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMP--LLLQAAVLVRENKAGKAEEL 373
R + N+ L + N+M+ A L + + + P LLL A L++E KA L
Sbjct: 298 RTDMLINQALFYWYTNQMEAC---TAKLRTVSQEELSPRALLLSATQLIKEKNVDKAVLL 354
Query: 374 LGQFAEKLPDKSKI---ILLARAQVA---AAAN----------HPFIAAESLAKI--PDI 415
L + S+I I LA AQ+ +AN + A+ L I +
Sbjct: 355 LQSYLSNFAG-SQIDAEIPLALAQLNLRRTSANNLGTGSPQPKNALNVAQMLENILPQHL 413
Query: 416 QHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNA----------MTEDNKL-SVIMQ 464
H P ++T +AL A + A ++K +N + E N++ S ++
Sbjct: 414 IHSPGVLSTRIALYLLASSGENAVQTRPDSMKQIVNCIESTLHYYEELGEQNEIYSHLLD 473
Query: 465 EAASFKLRHGREEDASHLFE-ELVKTHGSI----------EALVG-LVTTSAHVDVDKAE 512
A+F L+ G + A+ L E +L + +I + LV LV A D KAE
Sbjct: 474 NCAAFLLQQGEAKLAAELLEKQLARLESNICQEKQNSLIKQVLVARLVRAYAQFDRPKAE 533
Query: 513 SYEKRLKPLPGLNGVDVDSLEKT--SGAKHVESASYFEVNEAHGEGKNKDKAKKKRKRKP 570
K L+ L+ DVD+LE T GAK ++ + + DK K KR +
Sbjct: 534 QTCKSLQAKESLSEADVDTLETTFLYGAKSLK-----RLGKPSEPTDTSDKGKSKRSQIK 588
Query: 571 R----YPKGFDPA---------------------NPGPPPDPERWLPKRERSSYRPRRKD 605
+ P DP PG PDP RWLP+RER+ YR +R+D
Sbjct: 589 KSISDIPSSEDPGAQPVISRPKRKKRKVRLPKNYQPGVMPDPNRWLPRRERTHYRGKRRD 648
Query: 606 KRAAQVRGSQGAVVRE 621
KR A RG QG + E
Sbjct: 649 KRFAPTRGPQGQITGE 664
>sp|P91240|SRP72_CAEEL Signal recognition particle 72 kDa protein homolog
OS=Caenorhabditis elegans GN=F08D12.1 PE=3 SV=2
Length = 635
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 176/618 (28%), Positives = 276/618 (44%), Gaps = 66/618 (10%)
Query: 24 FTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKF 83
T ++R ++++A+ A++++ P + A +CK+VA I+ DAL I+ +
Sbjct: 13 LTDISRADTSGDYQKALTSANKLIRKYPKETFAFKCKLVAQIQLSQYADALELIRKTPAH 72
Query: 84 TF-DFNYLKAYCLYRQNRLDEALESLKIQENNPATML-LKSQILYRSGEMDACVEFYQKL 141
+ KAY YRQ+ LDEA++ L + + L LK+Q+ Y+ + Y L
Sbjct: 73 QMGHVGFEKAYIHYRQDELDEAIKELNTCDKDDVKALELKAQVFYKQENYQQAYDIYLYL 132
Query: 142 QKSKIDSLE----INFVAGLISAGRASEVQKTLDSLRVK-----ATSSFELAYNTACSLA 192
K+ D + NF+A VQ L++ VK S+ YN AC
Sbjct: 133 LKNHSDDSDELRRANFLA----------VQARLEAQGVKQAVAETEDSYSQLYNRACVEI 182
Query: 193 EMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGA 252
E K +A + L A + +++ D++ ED+IE EL I VQ AYV Q +G EA
Sbjct: 183 EAEKLPQALESLEKALKTCRKSFEDEDREEDEIEEELDSIRVQKAYVLQRMGQKAEALAI 242
Query: 253 YTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD-LRL 311
Y + N D S A NN+ A + +S K+ F+ A +D +L
Sbjct: 243 YEKVQAANHPDSSVKATITNNIPAASSDFALPESRKR-----------FKAALQIDQTKL 291
Query: 312 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAE 371
+ +QR + N L+LL +N+ + + + L F S L++A + K G AE
Sbjct: 292 TRRQRLTLMLNNALVLLLSNQREPCKRALEELVAKFGSSKDVALIEATLHF---KMGDAE 348
Query: 372 ELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPAT---VATLVAL 428
L A ++S LAR V A A ++ +P + A+ +TL+A
Sbjct: 349 AALKVLAGSDLEQS----LARLHVLLNAGRLPEAVGAIRDLPISGKLGASSLLTSTLIAA 404
Query: 429 KERAGDIDGAAAVLDSAIKWWLNAMTEDNK----LSVIMQEAASFKLRHGREEDASHLFE 484
R D A+K + A T N+ L I+++ + + G E A+ E
Sbjct: 405 DSR-----------DEAVKELVAASTAKNQTPEALKSILEDLVEVEQQRGNETAATKHLE 453
Query: 485 ELV-KTHGSIEALVGLVTTSAHVDVDKAESYEKRLKPLPGLNGVDVDSLEKTS----GAK 539
+LV K ++ LV + D KAES +L P V+VD LE + G K
Sbjct: 454 KLVEKFPEDLQLQCRLVGAYSKTDPKKAESLSAKLFPETMEVDVNVDELEDSDWILYGEK 513
Query: 540 HVESASYFEVNEAHGEGKNKDKAKKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSY 599
+ + A K K KRKRK R PK + N PDPERWLP++ERS+Y
Sbjct: 514 YRQKKEAKSPQTAEIAATRKLKIATKRKRKIRLPKNY---NSAVTPDPERWLPRQERSTY 570
Query: 600 RPRRKDKRAAQVRGSQGA 617
+ +RK++ RG+QG+
Sbjct: 571 KRKRKNREREIGRGTQGS 588
>sp|O59787|SRP72_SCHPO Signal recognition particle subunit srp72 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=srp72 PE=3 SV=1
Length = 561
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 131/576 (22%), Positives = 242/576 (42%), Gaps = 80/576 (13%)
Query: 60 KVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATML 119
KV+ LI + + AL I+ T D Y +AYC ++ + D +LE + ++
Sbjct: 30 KVLNLIDIERYEHALKIIEKYLGET-DAVYERAYCAFQLGKEDFSLEDKQFLQH------ 82
Query: 120 LKSQILYRSGEMDACVEFYQKLQKSKIDS---LEINFVAGLISAGRASEVQKTLDSLRVK 176
L++Q YR + ++ Y+ L+ + + +N +A AS+ L L++
Sbjct: 83 LQAQKAYRLSDFSKALKIYEHLENDLPEQRADIRVNMLAA------ASQ----LPGLQLN 132
Query: 177 ATSSFE---LAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIA 233
S + +N A + + +A +LL ++ + + +D N + +I L +
Sbjct: 133 NAVSLDDQDSVFNLATRYLTIGDWNQAIELLSSS--LEKLENSDSNSEDHKSQINLCRLQ 190
Query: 234 VQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDR- 292
+ AY+Q G+ ++A I K L DE+S A+ VNNL+++ +D
Sbjct: 191 LFFAYLQA--GDNEKASKESLKISKDCL-DETSQAIFVNNLISMS-----------IDNP 236
Query: 293 -IKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV 351
I +D+ L + L L+ ++++ I N LL + K R+ P+
Sbjct: 237 YISFRDLHGTNLEKALSSLLASQKKQFI-RNLALLDMAVGKQRSVRKEKKRNPEE----- 290
Query: 352 MPLLLQAAVLVRENKAGKAEELLGQFAEKL--PDKSKIILLARAQVAAAANHPFIAAESL 409
+ +L E K+ + + L + E L D I++ +N F A S+
Sbjct: 291 -SIYFSTILLREETKSLISPKKLPGYLENLFKSDSDNIVVALLLMQHKISNGNFRGALSI 349
Query: 410 ----------AKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKL 459
++ + + P V AL + + +L A +W + + KL
Sbjct: 350 YQKLRTSLEASQSLSVLYSPGLVGLGDALHYKIQSTGFKSQLLHEAANYWRKQQSCEAKL 409
Query: 460 SVIMQEAASFKLRHGRE-------EDASHLFEELVKTHGSIEALVGL-VTTSAHVDVDKA 511
+ + L H E +D + ++L++ G I LV V ++D +
Sbjct: 410 LLCTRSL----LAHLDERAPVSTIQDDMSVIDDLLQWKGPISELVSCKVAALCYLDKEIE 465
Query: 512 ESYEKRLKPLPGL-NGVDVDSLEKTSGAKHVESASYFEVNEAHGEGKNKDKAKKKRKRKP 570
+K L P L G+DVD +E + V ++ + E + + +KK RKR+
Sbjct: 466 SGMDKYLVPTKDLITGIDVDDIE----IRGVPVSAAIGPIKRSVEANSSNSSKKTRKRRK 521
Query: 571 RYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDK 606
PK F NP PDP+RW+PKR+R++ + + K K
Sbjct: 522 PTPKSF---NPKATPDPQRWIPKRDRTNVKIKSKGK 554
>sp|P38688|SRP72_YEAST Signal recognition particle subunit SRP72 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SRP72 PE=1
SV=2
Length = 640
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 585 PDPERWLPKRERSSYRPRRKDKRAAQVRG 613
PDPERWLP R+RS+YRP++K + A Q +G
Sbjct: 579 PDPERWLPLRDRSTYRPKKKQQGAKQTQG 607
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/332 (21%), Positives = 138/332 (41%), Gaps = 49/332 (14%)
Query: 20 IEDLFTSLNRHIERSEFEQAVKVADQVLST---NPSDEDAMRCKVVALIKADNIDDALST 76
+ +L + LN + + E Q + ++L + NP+D R +VA+I+ D AL
Sbjct: 6 LTNLLSQLNIQLSQDEHSQVEQTCVKLLDSGCENPAD--VFRRCLVAVIQQDKYQKALHY 63
Query: 77 IQSSQ----KFTFDFNYLKAYCLYRQNRLDEA-------------------LESLKIQEN 113
++ + K+ F K Y Y+ N DE +ESL+
Sbjct: 64 LKKFKHIDDKYGRKFALEKLYIFYKLNMPDEFNTLYTAIITDDLDTVLKKDIESLR---- 119
Query: 114 NPATMLLKSQILYRSGEMDACVEFYQKL----QKSKIDSLEINFVAGLISAGRASEVQKT 169
+ +++Q Y++G + YQ L +K + +E++ + A+E+
Sbjct: 120 --GILHVRAQYCYKNGLYQEAFKIYQHLASHNEKDQDSQIELS-CNERVPLSVATELMNR 176
Query: 170 LDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIEL 229
+ SS++L +N + +A + KY +A +LL A + T++ + D +
Sbjct: 177 SPLVTPMDESSYDLLFNESFIMASVGKYDKAIELLEKAL----QGATNEGYQND-----I 227
Query: 230 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKK 289
I +QL++V Q++G T ++ +++ AD + NNL A N +
Sbjct: 228 NTIKLQLSFVLQMVGKTAQSKEILKGLLQELKADSPFSLICQNNLNAFVDFSKYNTNFNL 287
Query: 290 LDR-IKEKDMQNFQLARVLDLRLSPKQREAIY 320
L R + + + F L + S QR ++
Sbjct: 288 LLRELNVEKLNTFNLQTFTHEQWSNIQRNVLF 319
>sp|Q58350|Y940_METJA TPR repeat-containing protein MJ0940 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0940 PE=4 SV=1
Length = 318
Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 11/143 (7%)
Query: 36 FEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDF---NYLKA 92
F+ A++ ++ L A KV+ L + D+ L F +F +KA
Sbjct: 100 FDNALECYEKSLGIEEKFATAFFLKVLCLGLSGKYDELLKCCDRLISFAPNFIPAYIIKA 159
Query: 93 YCLYRQNRLDEALES----LKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDS 148
L + R +EAL L+++EN+ + LK+ IL R G D +++Y+KL ID
Sbjct: 160 NMLRKLGRYEEALACVNKVLELKENDTNAIYLKALILNRIGNCDEALKYYEKL----IDE 215
Query: 149 LEINFVAGLISAGRASEVQKTLD 171
L + ++ + A S + LD
Sbjct: 216 LNVTWIEVIREAIYLSFLFNKLD 238
>sp|Q58741|Y1345_METJA TPR repeat-containing protein MJ1345 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1345 PE=4 SV=1
Length = 314
Score = 36.6 bits (83), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 123/310 (39%), Gaps = 54/310 (17%)
Query: 108 LKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAG--LISAGRASE 165
L+++E+ P + K++IL GE D +E++ K K K + NF+ G L+S G+ E
Sbjct: 39 LEVRES-PDVYVRKARILRTLGENDKALEYFDKALKLKPKYILANFLKGALLVSLGKLEE 97
Query: 166 VQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDI 225
++ L S + Y TA L ++ +Y A +++ D I
Sbjct: 98 AKEVFLKLCRLEKSDLPVKYVTAFILKKLGEYDYALKII------------------DKI 139
Query: 226 EIELAPIAVQLAYVQQLL---GNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD 282
+ A+ A ++L G +++ + + +K N D S L L +
Sbjct: 140 LKKYPKSAIAWAEKGEILYREGKLKKSLECFDNALKINPKDCQSLLYKGEILFKLGRYGE 199
Query: 283 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAA 342
LKK+ KD+ R +Y ++ L++ +++QA E
Sbjct: 200 ALKCLKKVFERNNKDI-----------------RALMYIIQI--LIYLGRLNQALEYTKK 240
Query: 343 LPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHP 402
+ PD + L + +L NK GK E + F DK +L + A N
Sbjct: 241 ALKLNPDDPLLYLYKGIIL---NKLGKYNEAIKYF-----DK---VLEINPNIPDAWNGK 289
Query: 403 FIAAESLAKI 412
IA E L KI
Sbjct: 290 AIALEKLGKI 299
Score = 33.1 bits (74), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDAL 74
P P+ L+ + + + ++ +A+K D+VL NP+ DA K +AL K I++A+
Sbjct: 245 NPDDPLLYLYKGIILN-KLGKYNEAIKYFDKVLEINPNIPDAWNGKAIALEKLGKINEAI 303
Query: 75 ST 76
Sbjct: 304 EC 305
>sp|P19737|Y425_SYNP2 TPR repeat-containing protein SYNPCC7002_A0425 OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6)
GN=SYNPCC7002_A0425 PE=4 SV=2
Length = 387
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 90/211 (42%), Gaps = 11/211 (5%)
Query: 10 SPSPSQPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADN 69
SPS + P + L N + F QAV+ Q L+ ++ AL + N
Sbjct: 53 SPSVTWANPQLNALLEQGNEQLTNRNFAQAVQHYRQALTLEANNARIHGALGYALSQLGN 112
Query: 70 IDDALSTIQSSQKFTFD----FNYLKAYCLYRQ--NR--LDEALESLKIQENNPATMLLK 121
+A++ + + + D FN L + L + NR ++ + ++Q NN A L
Sbjct: 113 YSEAVTAYRRATELEDDNAEFFNAL-GFNLAQSGDNRSAINAYQRATQLQPNNLAYSLGL 171
Query: 122 SQILYRSGEMDACVEFYQK-LQKSKIDSLEI-NFVAGLISAGRASEVQKTLDSLRVKATS 179
+ + +R+G+ D + Y+K L K +++ + N + L+ GR E L + +
Sbjct: 172 ATVQFRAGDYDQALVAYRKVLAKDSNNTMALQNSLTSLLQLGRNQEAAVLFPDLLRQRPN 231
Query: 180 SFELAYNTACSLAEMNKYTEAEQLLLTARRI 210
EL A + +N +A L ARR+
Sbjct: 232 DAELRIKAAVTWFGLNDRDQAIAFLEEARRL 262
>sp|Q57711|Y941_METJA TPR repeat-containing protein MJ0941 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0941 PE=4 SV=3
Length = 338
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 34 SEFEQAVKVADQVL-STNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFD---FNY 89
+F +A++ +++ N DA+R V ++ D++ DA I + D Y
Sbjct: 213 GKFREALECFKKLIDELNVKWIDAIRHAVSLMLALDDLKDAERYINIGLEIRKDDVALWY 272
Query: 90 LKAYCLYRQNRLDEALES----LKIQENNPATMLLKSQILYRSGEMDACVEFYQK 140
K R +LDEAL+ +++Q + +L K++I R G ++A +E+Y K
Sbjct: 273 FKGELYERLGKLDEALKCYEKVIELQPHYIKALLSKARIYERQGNIEAAIEYYNK 327
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/227 (18%), Positives = 92/227 (40%), Gaps = 39/227 (17%)
Query: 124 ILYRSGEMDACVEFYQKLQKSKIDSLEINF---VAGLISAGRASEVQKTLDSLRVKATSS 180
+ + G +D E Y+++ +S +D + + + GL GR + +KT D + K
Sbjct: 255 VFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFP 314
Query: 181 FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQ 240
+ YNT ++ K+ ++ + +R+ E D F + + Y Q
Sbjct: 315 NVVTYNTL--ISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYN---------TLIHGYCQ 363
Query: 241 QLLGNTQEAFGAYTDIIKRNLA-DESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQ 299
+G + A + ++ R + D + + ++ L ++ +L K D ++E +
Sbjct: 364 --VGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCV---NGEIESALVKFDDMRESE-- 416
Query: 300 NFQLARVLDLRLSPKQREAIYANRVLL--LLHANKMDQARELVAALP 344
+ I A +++ L A+K+++A EL LP
Sbjct: 417 ---------------KYIGIVAYNIMIHGLCKADKVEKAWELFCRLP 448
>sp|Q8TWU7|RSMA_METKA Probable ribosomal RNA small subunit methyltransferase A
OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM
9639 / NBRC 100938) GN=rsmA PE=3 SV=1
Length = 278
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 208 RRIGQETLTDDNFA----------EDDIEIELAPIAVQLA-YVQQLLGNT--QEAFGAYT 254
RR+GQ + DDN EDDI +E+ P L Y+ G E G
Sbjct: 20 RRLGQHFMVDDNILEFMVEAAEVREDDIVLEIGPGPGLLTRYLMTRAGQVIAVELDGRMV 79
Query: 255 DIIKRNLADESSFAVAVNNLVALKGPKDVN 284
+I+KR L + + + + + P DVN
Sbjct: 80 EILKRELGEAPNLEIVRADFLEYDVPDDVN 109
>sp|Q54DA8|STIP1_DICDI Protein STIP1 homolog OS=Dictyostelium discoideum GN=sti1 PE=3 SV=1
Length = 564
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Query: 28 NRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALST----IQSSQKF 83
N+ + EFEQA+ D+ + + SD AM K LI+ +D+A+ T ++ +Q+
Sbjct: 252 NKAYAKKEFEQAIVHYDKAVELDSSDILAMNNKAAVLIEQQKLDEAIETCKKALEKAQEI 311
Query: 84 TFDFN-----YLKAYCLY-RQNRLDEALES 107
D+ Y + +Y ++N+LD+A ++
Sbjct: 312 RADYRVKSKVYTRLGNIYLKKNQLDDAYKA 341
>sp|Q7N8Q9|XNI_PHOLL Protein Xni OS=Photorhabdus luminescens subsp. laumondii (strain
TT01) GN=xni PE=3 SV=1
Length = 252
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 404 IAAESLAKIPDIQHM-PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVI 462
+A S +KIP IQ + P T ATL+ ++AG +D LD + W N + + +++ I
Sbjct: 170 LAGISSSKIPGIQGIGPKTAATLL---QQAGTLDNLFQHLDQQPEKWRNKLESNQEIAFI 226
Query: 463 MQEAASFK 470
+E AS +
Sbjct: 227 SREVASLR 234
>sp|Q66GP4|PP379_ARATH Pentatricopeptide repeat-containing protein At5g13770,
chloroplastic OS=Arabidopsis thaliana GN=At5g13770 PE=2
SV=1
Length = 609
Score = 34.3 bits (77), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 127 RSGEMDACVEFYQ--KLQKSKIDSLEINFVAGLIS-AGRASEVQKTLDSLRVKAT 178
RS E++ CVE YQ ++ + KID + G+ S R E+ + L ++V+ T
Sbjct: 505 RSKELERCVELYQEFRMNRGKIDRAMAGIMVGVFSKTSRIDELMRLLQDMKVEGT 559
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,413,451
Number of Sequences: 539616
Number of extensions: 9700854
Number of successful extensions: 45448
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 224
Number of HSP's that attempted gapping in prelim test: 44789
Number of HSP's gapped (non-prelim): 764
length of query: 666
length of database: 191,569,459
effective HSP length: 124
effective length of query: 542
effective length of database: 124,657,075
effective search space: 67564134650
effective search space used: 67564134650
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)