Query 005990
Match_columns 666
No_of_seqs 829 out of 3330
Neff 10.8
Searched_HMMs 46136
Date Thu Mar 28 16:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2376 Signal recognition par 100.0 2.4E-85 5.3E-90 632.1 56.9 594 18-623 10-619 (652)
2 KOG4626 O-linked N-acetylgluco 100.0 1.5E-38 3.3E-43 308.6 34.3 444 17-503 45-500 (966)
3 KOG4626 O-linked N-acetylgluco 100.0 1.1E-36 2.5E-41 295.6 29.2 370 15-453 111-490 (966)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 7.1E-33 1.5E-37 319.6 51.4 448 26-517 437-896 (899)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 6.5E-32 1.4E-36 311.6 54.0 460 16-517 359-828 (899)
6 PRK11447 cellulose synthase su 100.0 3.3E-31 7.1E-36 305.8 54.3 492 15-519 57-698 (1157)
7 PRK11447 cellulose synthase su 100.0 3E-31 6.5E-36 306.2 48.9 433 25-488 274-739 (1157)
8 TIGR00990 3a0801s09 mitochondr 100.0 4.5E-30 9.8E-35 278.7 43.6 425 21-517 128-567 (615)
9 TIGR00990 3a0801s09 mitochondr 100.0 5.1E-29 1.1E-33 270.5 42.8 399 16-492 157-574 (615)
10 KOG2002 TPR-containing nuclear 100.0 2.5E-28 5.4E-33 250.5 37.9 450 15-492 159-748 (1018)
11 PRK15174 Vi polysaccharide exp 100.0 1.3E-27 2.9E-32 258.1 42.2 371 18-486 40-417 (656)
12 PRK10049 pgaA outer membrane p 100.0 4.1E-27 9E-32 259.9 44.2 418 17-503 12-470 (765)
13 KOG2002 TPR-containing nuclear 100.0 5.4E-27 1.2E-31 240.8 38.4 442 14-472 227-762 (1018)
14 PRK15174 Vi polysaccharide exp 100.0 1.6E-26 3.6E-31 249.6 41.3 323 94-492 51-384 (656)
15 KOG2376 Signal recognition par 100.0 1.7E-24 3.6E-29 211.1 39.5 520 15-609 41-611 (652)
16 KOG0547 Translocase of outer m 100.0 1.5E-25 3.2E-30 213.3 30.9 363 20-451 115-569 (606)
17 PRK09782 bacteriophage N4 rece 100.0 3.5E-24 7.6E-29 236.2 45.7 481 19-517 43-702 (987)
18 PRK09782 bacteriophage N4 rece 100.0 4.2E-24 9.1E-29 235.6 45.3 434 17-492 179-709 (987)
19 PRK14574 hmsH outer membrane p 99.9 2.5E-23 5.5E-28 224.8 47.3 456 14-500 28-524 (822)
20 PRK10049 pgaA outer membrane p 99.9 6.7E-24 1.5E-28 234.5 43.8 402 85-519 15-454 (765)
21 PLN03081 pentatricopeptide (PP 99.9 7.2E-23 1.6E-27 225.9 44.0 450 22-519 89-555 (697)
22 PLN03218 maturation of RBCL 1; 99.9 2.1E-21 4.6E-26 215.7 51.2 466 18-517 368-872 (1060)
23 PLN03077 Protein ECB2; Provisi 99.9 7.4E-22 1.6E-26 223.2 44.6 443 22-518 224-717 (857)
24 PLN03077 Protein ECB2; Provisi 99.9 1.3E-21 2.9E-26 221.2 45.2 215 24-259 125-383 (857)
25 PLN03218 maturation of RBCL 1; 99.9 6.1E-21 1.3E-25 212.2 47.3 425 35-500 352-796 (1060)
26 PLN03081 pentatricopeptide (PP 99.9 1.8E-21 4E-26 214.7 43.2 421 21-490 124-558 (697)
27 PRK11788 tetratricopeptide rep 99.9 4.5E-22 9.8E-27 205.6 35.1 304 114-488 34-346 (389)
28 KOG2076 RNA polymerase III tra 99.9 2.5E-21 5.3E-26 198.4 38.2 408 15-488 134-554 (895)
29 PRK11788 tetratricopeptide rep 99.9 7.5E-22 1.6E-26 204.0 34.9 302 19-413 34-345 (389)
30 KOG1126 DNA-binding cell divis 99.9 5.7E-23 1.2E-27 204.2 24.7 292 24-383 323-623 (638)
31 KOG2003 TPR repeat-containing 99.9 5.7E-22 1.2E-26 186.9 28.6 446 20-492 149-658 (840)
32 PRK14574 hmsH outer membrane p 99.9 3.1E-20 6.8E-25 201.0 45.9 439 46-518 26-510 (822)
33 KOG0547 Translocase of outer m 99.9 5.2E-22 1.1E-26 189.3 27.6 350 116-492 116-569 (606)
34 KOG0495 HAT repeat protein [RN 99.9 7.7E-20 1.7E-24 180.2 42.5 443 16-502 376-860 (913)
35 KOG1173 Anaphase-promoting com 99.9 6.2E-21 1.4E-25 185.6 33.2 438 16-496 12-525 (611)
36 KOG1155 Anaphase-promoting com 99.9 3.7E-19 8.1E-24 169.0 40.1 369 52-492 162-539 (559)
37 KOG0624 dsRNA-activated protei 99.9 5.9E-20 1.3E-24 167.6 30.9 319 15-417 33-372 (504)
38 KOG1173 Anaphase-promoting com 99.9 1.5E-20 3.3E-25 182.9 28.9 365 18-452 47-522 (611)
39 KOG1126 DNA-binding cell divis 99.9 1.2E-21 2.5E-26 194.9 21.4 292 91-451 325-623 (638)
40 KOG0548 Molecular co-chaperone 99.9 1.2E-19 2.5E-24 176.3 34.4 387 21-444 3-485 (539)
41 KOG2003 TPR repeat-containing 99.9 1.4E-19 3.1E-24 170.9 29.6 295 119-487 423-723 (840)
42 KOG1155 Anaphase-promoting com 99.9 1.5E-18 3.3E-23 164.9 35.8 437 22-518 80-533 (559)
43 KOG3785 Uncharacterized conser 99.9 1.7E-17 3.7E-22 152.3 38.0 426 27-503 29-511 (557)
44 KOG1156 N-terminal acetyltrans 99.9 3.9E-18 8.5E-23 168.8 35.8 433 20-491 7-513 (700)
45 KOG0495 HAT repeat protein [RN 99.9 5.1E-17 1.1E-21 160.6 42.5 430 15-495 344-788 (913)
46 KOG2076 RNA polymerase III tra 99.8 3.1E-18 6.7E-23 175.9 32.9 332 88-487 142-510 (895)
47 KOG1174 Anaphase-promoting com 99.8 2.2E-16 4.7E-21 148.1 40.7 367 86-495 98-506 (564)
48 KOG1174 Anaphase-promoting com 99.8 6.1E-18 1.3E-22 158.4 30.4 368 15-452 92-504 (564)
49 KOG4162 Predicted calmodulin-b 99.8 4.5E-17 9.7E-22 164.7 37.1 430 31-492 295-786 (799)
50 TIGR00540 hemY_coli hemY prote 99.8 2.1E-17 4.5E-22 169.9 34.2 302 87-449 86-400 (409)
51 KOG3785 Uncharacterized conser 99.8 1E-16 2.2E-21 147.2 33.4 409 25-448 62-490 (557)
52 PRK10747 putative protoheme IX 99.8 2.6E-17 5.7E-22 168.1 33.3 298 88-449 87-391 (398)
53 KOG4162 Predicted calmodulin-b 99.8 9.3E-17 2E-21 162.4 36.2 417 20-452 322-787 (799)
54 KOG0624 dsRNA-activated protei 99.8 7.6E-18 1.7E-22 154.0 25.8 317 114-495 37-376 (504)
55 PF13429 TPR_15: Tetratricopep 99.8 1.5E-19 3.3E-24 176.6 12.8 256 90-414 13-276 (280)
56 PF13429 TPR_15: Tetratricopep 99.8 4E-20 8.7E-25 180.7 8.6 260 151-488 12-276 (280)
57 TIGR00540 hemY_coli hemY prote 99.8 3.7E-17 8.1E-22 168.0 30.7 301 117-489 86-399 (409)
58 KOG0548 Molecular co-chaperone 99.8 2E-16 4.3E-21 154.1 32.3 429 57-514 5-483 (539)
59 KOG1915 Cell cycle control pro 99.8 1.3E-14 2.9E-19 138.5 41.2 435 27-494 80-541 (677)
60 PRK10747 putative protoheme IX 99.8 1.2E-15 2.6E-20 155.9 33.8 302 117-490 86-391 (398)
61 KOG0550 Molecular chaperone (D 99.8 1.2E-16 2.6E-21 150.1 23.8 297 20-383 49-353 (486)
62 KOG4340 Uncharacterized conser 99.8 2.1E-15 4.4E-20 135.7 29.2 187 27-213 17-210 (459)
63 PRK12370 invasion protein regu 99.8 1.8E-16 4E-21 169.1 27.1 258 117-446 260-533 (553)
64 COG2956 Predicted N-acetylgluc 99.8 2.2E-15 4.9E-20 137.2 29.6 270 118-450 38-313 (389)
65 PRK12370 invasion protein regu 99.8 2.1E-16 4.5E-21 168.7 26.7 251 161-490 275-536 (553)
66 KOG1129 TPR repeat-containing 99.8 5.8E-17 1.3E-21 147.3 18.3 276 15-357 176-469 (478)
67 KOG1840 Kinesin light chain [C 99.8 4.3E-15 9.4E-20 150.4 33.6 316 94-489 137-479 (508)
68 PF08492 SRP72: SRP72 RNA-bind 99.8 5.9E-19 1.3E-23 118.4 3.7 34 565-601 26-59 (59)
69 KOG1129 TPR repeat-containing 99.7 1.2E-15 2.6E-20 138.9 25.6 360 22-450 6-460 (478)
70 COG2956 Predicted N-acetylgluc 99.7 1.4E-14 2.9E-19 132.2 28.5 230 20-263 35-282 (389)
71 PRK11189 lipoprotein NlpI; Pro 99.7 2.5E-15 5.4E-20 147.0 25.5 220 33-264 39-270 (296)
72 PRK11189 lipoprotein NlpI; Pro 99.7 3.1E-15 6.6E-20 146.3 24.8 213 115-399 64-284 (296)
73 TIGR02521 type_IV_pilW type IV 99.7 4.5E-15 9.7E-20 141.6 25.6 200 19-260 30-233 (234)
74 KOG1127 TPR repeat-containing 99.7 3E-14 6.5E-19 147.7 31.6 447 33-492 471-965 (1238)
75 KOG1125 TPR repeat-containing 99.7 1.3E-15 2.9E-20 149.6 20.5 224 23-251 288-563 (579)
76 COG3063 PilF Tfp pilus assembl 99.7 7.1E-15 1.5E-19 128.2 22.0 205 116-386 36-242 (250)
77 TIGR02521 type_IV_pilW type IV 99.7 7.6E-15 1.6E-19 140.0 24.8 201 114-380 30-232 (234)
78 KOG1127 TPR repeat-containing 99.7 5.9E-14 1.3E-18 145.5 32.2 416 15-450 487-998 (1238)
79 KOG1156 N-terminal acetyltrans 99.7 1.8E-12 3.9E-17 129.2 41.3 418 15-450 36-513 (700)
80 KOG1915 Cell cycle control pro 99.7 5.9E-12 1.3E-16 120.7 43.1 441 42-517 61-532 (677)
81 KOG1840 Kinesin light chain [C 99.7 9.7E-15 2.1E-19 147.9 24.4 237 15-259 194-479 (508)
82 COG3063 PilF Tfp pilus assembl 99.7 3.4E-14 7.4E-19 124.0 23.5 204 20-265 35-242 (250)
83 KOG1125 TPR repeat-containing 99.7 6.8E-15 1.5E-19 144.8 21.3 265 151-477 289-559 (579)
84 cd05804 StaR_like StaR_like; a 99.7 7.8E-13 1.7E-17 134.8 34.9 316 50-453 2-341 (355)
85 cd05804 StaR_like StaR_like; a 99.6 6.2E-13 1.3E-17 135.5 31.9 207 16-261 2-217 (355)
86 PRK04841 transcriptional regul 99.6 2.8E-11 6.1E-16 139.3 44.5 383 55-492 342-763 (903)
87 KOG0550 Molecular chaperone (D 99.6 2.8E-14 6E-19 134.4 15.9 284 152-492 54-353 (486)
88 PF12569 NARP1: NMDA receptor- 99.6 1.3E-11 2.8E-16 127.2 35.3 311 87-452 6-338 (517)
89 TIGR03302 OM_YfiO outer membra 99.6 5.9E-13 1.3E-17 126.7 23.1 197 14-261 27-234 (235)
90 PLN02789 farnesyltranstransfer 99.6 1.7E-12 3.7E-17 126.4 25.7 222 116-399 38-268 (320)
91 PF12569 NARP1: NMDA receptor- 99.6 1.3E-12 2.8E-17 134.4 25.5 321 115-491 4-336 (517)
92 KOG2047 mRNA splicing factor [ 99.6 7.6E-10 1.7E-14 110.5 42.8 470 15-514 22-572 (835)
93 KOG2047 mRNA splicing factor [ 99.6 3.5E-10 7.7E-15 112.8 40.4 390 39-490 232-688 (835)
94 PLN02789 farnesyltranstransfer 99.5 3.2E-12 6.9E-17 124.4 25.5 217 30-261 47-304 (320)
95 COG3071 HemY Uncharacterized e 99.5 2.6E-10 5.6E-15 108.1 32.6 297 88-449 87-391 (400)
96 TIGR03302 OM_YfiO outer membra 99.5 7.8E-12 1.7E-16 119.0 20.2 184 151-382 37-234 (235)
97 PRK04841 transcriptional regul 99.5 2.3E-10 4.9E-15 131.9 36.2 377 17-449 337-761 (903)
98 KOG4340 Uncharacterized conser 99.5 4.2E-11 9E-16 108.3 23.0 385 15-451 39-446 (459)
99 COG3071 HemY Uncharacterized e 99.5 6.2E-10 1.3E-14 105.6 31.9 302 117-490 86-391 (400)
100 PRK14720 transcript cleavage f 99.4 8.3E-11 1.8E-15 126.5 26.3 255 15-379 26-282 (906)
101 PRK15179 Vi polysaccharide bio 99.4 4E-11 8.7E-16 128.3 22.9 157 93-264 64-222 (694)
102 KOG3060 Uncharacterized conser 99.4 4.8E-11 1E-15 105.8 17.7 181 319-507 54-239 (289)
103 PRK15359 type III secretion sy 99.4 1.6E-11 3.5E-16 105.6 14.6 117 135-267 13-129 (144)
104 PRK10370 formate-dependent nit 99.3 1.6E-10 3.5E-15 105.1 20.5 145 61-213 23-176 (198)
105 PF04733 Coatomer_E: Coatomer 99.3 8.3E-11 1.8E-15 113.2 18.9 225 26-267 7-273 (290)
106 PRK10370 formate-dependent nit 99.3 9.3E-11 2E-15 106.6 18.0 153 91-265 22-179 (198)
107 PRK15359 type III secretion sy 99.3 4E-11 8.8E-16 103.2 14.4 125 40-194 13-139 (144)
108 COG5010 TadD Flp pilus assembl 99.3 2.1E-10 4.6E-15 103.0 19.0 178 37-257 50-229 (257)
109 PRK15179 Vi polysaccharide bio 99.3 1.5E-10 3.3E-15 124.0 20.6 128 85-212 86-219 (694)
110 KOG3617 WD40 and TPR repeat-co 99.3 3.6E-08 7.8E-13 101.3 35.3 296 59-412 805-1171(1416)
111 KOG3060 Uncharacterized conser 99.3 2E-09 4.4E-14 95.6 21.7 160 91-265 58-226 (289)
112 KOG1130 Predicted G-alpha GTPa 99.3 2.8E-10 6.1E-15 107.5 17.4 230 19-257 16-302 (639)
113 PRK14720 transcript cleavage f 99.3 1.6E-09 3.5E-14 116.8 25.6 284 47-492 24-309 (906)
114 COG5010 TadD Flp pilus assembl 99.3 5E-10 1.1E-14 100.6 17.5 164 15-206 62-227 (257)
115 PF04733 Coatomer_E: Coatomer 99.3 4.4E-10 9.5E-15 108.2 18.6 84 333-417 183-267 (290)
116 KOG1130 Predicted G-alpha GTPa 99.2 5.8E-10 1.2E-14 105.5 16.1 301 119-490 21-345 (639)
117 PF14938 SNAP: Soluble NSF att 99.2 1.5E-08 3.4E-13 98.4 26.9 187 60-349 41-228 (282)
118 TIGR02552 LcrH_SycD type III s 99.2 3.7E-10 8.1E-15 97.0 13.8 115 136-265 4-120 (135)
119 KOG3617 WD40 and TPR repeat-co 99.2 3E-08 6.5E-13 101.8 27.6 315 120-486 805-1171(1416)
120 COG4783 Putative Zn-dependent 99.1 1.2E-08 2.5E-13 99.8 22.3 179 54-264 274-459 (484)
121 PRK15363 pathogenicity island 99.1 5.6E-10 1.2E-14 93.7 11.5 101 112-212 32-134 (157)
122 KOG1128 Uncharacterized conser 99.1 1.7E-09 3.8E-14 109.9 16.5 219 51-346 395-616 (777)
123 PRK15363 pathogenicity island 99.1 2.4E-09 5.3E-14 89.9 13.6 103 143-260 28-133 (157)
124 KOG1128 Uncharacterized conser 99.1 4E-09 8.8E-14 107.3 16.9 215 21-260 399-617 (777)
125 COG4783 Putative Zn-dependent 99.1 4.6E-09 9.9E-14 102.6 16.6 149 317-490 306-455 (484)
126 PF14938 SNAP: Soluble NSF att 99.1 2.5E-08 5.3E-13 97.0 21.7 102 422-523 158-265 (282)
127 TIGR02552 LcrH_SycD type III s 99.1 1.1E-09 2.3E-14 94.2 10.7 114 338-452 4-118 (135)
128 PF09976 TPR_21: Tetratricopep 99.1 5.7E-09 1.2E-13 90.4 15.0 123 20-142 11-145 (145)
129 PRK10866 outer membrane biogen 99.0 3.4E-08 7.4E-13 92.8 20.7 178 18-207 30-238 (243)
130 PF09976 TPR_21: Tetratricopep 99.0 9E-09 1.9E-13 89.1 15.5 123 324-446 18-145 (145)
131 PRK10866 outer membrane biogen 99.0 2.7E-08 5.8E-13 93.6 19.7 178 152-377 37-238 (243)
132 PF13525 YfiO: Outer membrane 99.0 1.7E-08 3.7E-13 92.7 18.1 164 19-201 4-198 (203)
133 KOG2053 Mitochondrial inherita 99.0 2.3E-05 5E-10 82.5 41.3 126 23-149 12-144 (932)
134 KOG0553 TPR repeat-containing 99.0 5.1E-09 1.1E-13 96.0 12.4 98 116-213 82-181 (304)
135 KOG0553 TPR repeat-containing 99.0 5.4E-09 1.2E-13 95.9 12.2 114 322-436 86-200 (304)
136 PF13525 YfiO: Outer membrane 99.0 7.6E-08 1.7E-12 88.4 19.3 179 115-370 5-197 (203)
137 PLN03088 SGT1, suppressor of 98.9 1.6E-08 3.5E-13 101.4 15.0 102 22-150 4-105 (356)
138 KOG3081 Vesicle coat complex C 98.9 3E-07 6.4E-12 82.8 20.3 225 22-263 10-275 (299)
139 KOG2053 Mitochondrial inherita 98.9 0.00011 2.4E-09 77.5 42.0 441 15-482 38-563 (932)
140 PLN03088 SGT1, suppressor of 98.9 2.7E-08 5.9E-13 99.7 14.7 96 118-213 5-102 (356)
141 KOG2471 TPR repeat-containing 98.9 3.2E-06 6.8E-11 82.5 27.0 433 18-492 15-651 (696)
142 KOG1070 rRNA processing protei 98.8 1.7E-06 3.6E-11 94.6 25.7 221 164-448 1441-1663(1710)
143 PF12895 Apc3: Anaphase-promot 98.8 1.6E-08 3.5E-13 78.2 8.0 78 32-110 1-83 (84)
144 TIGR02795 tol_pal_ybgF tol-pal 98.8 1.2E-07 2.6E-12 79.3 13.1 101 152-264 7-110 (119)
145 KOG1941 Acetylcholine receptor 98.8 9.7E-07 2.1E-11 82.8 19.7 317 56-448 8-360 (518)
146 COG4235 Cytochrome c biogenesi 98.8 1.5E-07 3.3E-12 87.3 14.1 110 104-213 145-259 (287)
147 PRK10803 tol-pal system protei 98.8 3.3E-07 7.2E-12 86.7 16.8 108 19-150 141-252 (263)
148 COG3898 Uncharacterized membra 98.8 7.9E-05 1.7E-09 71.1 31.9 292 90-448 89-392 (531)
149 TIGR02795 tol_pal_ybgF tol-pal 98.8 1.2E-07 2.5E-12 79.4 12.2 99 115-213 2-108 (119)
150 PF12895 Apc3: Anaphase-promot 98.8 3.8E-08 8.2E-13 76.1 8.2 79 128-207 2-84 (84)
151 PF13414 TPR_11: TPR repeat; P 98.8 5.4E-08 1.2E-12 72.1 8.5 67 180-261 2-69 (69)
152 KOG1070 rRNA processing protei 98.7 3.8E-06 8.3E-11 91.8 25.1 209 106-381 1449-1664(1710)
153 KOG3081 Vesicle coat complex C 98.7 5.7E-06 1.2E-10 74.8 22.0 85 332-417 188-273 (299)
154 PRK02603 photosystem I assembl 98.7 4.8E-07 1E-11 81.0 15.3 84 114-197 34-122 (172)
155 cd00189 TPR Tetratricopeptide 98.7 1.5E-07 3.2E-12 75.0 10.6 96 117-212 2-99 (100)
156 KOG0543 FKBP-type peptidyl-pro 98.7 2.4E-07 5.3E-12 89.0 13.4 131 116-261 209-357 (397)
157 COG4785 NlpI Lipoprotein NlpI, 98.7 2.3E-06 5E-11 74.5 17.8 211 21-248 66-293 (297)
158 PF13414 TPR_11: TPR repeat; P 98.7 5.9E-08 1.3E-12 71.8 7.3 67 19-85 2-69 (69)
159 KOG3616 Selective LIM binding 98.7 0.00026 5.7E-09 72.8 34.3 329 30-411 454-849 (1636)
160 PRK02603 photosystem I assembl 98.7 4.9E-07 1.1E-11 80.9 13.8 118 349-493 33-153 (172)
161 KOG2300 Uncharacterized conser 98.7 0.00054 1.2E-08 67.4 42.8 435 20-492 7-520 (629)
162 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 6.6E-07 1.4E-11 89.1 15.8 128 116-259 170-297 (395)
163 CHL00033 ycf3 photosystem I as 98.7 4.6E-07 9.9E-12 80.8 13.5 119 331-449 13-143 (168)
164 CHL00033 ycf3 photosystem I as 98.7 6.3E-07 1.4E-11 79.9 14.4 106 151-264 39-154 (168)
165 PF13432 TPR_16: Tetratricopep 98.7 1.3E-07 2.9E-12 68.9 7.9 62 152-213 2-63 (65)
166 COG4235 Cytochrome c biogenesi 98.6 1.1E-06 2.4E-11 81.7 15.5 122 131-267 138-264 (287)
167 KOG2471 TPR repeat-containing 98.6 2.2E-05 4.8E-10 76.8 24.7 208 20-242 100-381 (696)
168 PF13432 TPR_16: Tetratricopep 98.6 9.6E-08 2.1E-12 69.7 6.8 62 24-85 1-62 (65)
169 cd00189 TPR Tetratricopeptide 98.6 3.8E-07 8.2E-12 72.6 10.8 96 151-261 4-99 (100)
170 COG1729 Uncharacterized protei 98.6 9.6E-07 2.1E-11 81.0 14.0 106 21-150 142-250 (262)
171 PRK15331 chaperone protein Sic 98.6 2.1E-06 4.6E-11 72.7 14.9 104 151-270 41-144 (165)
172 PF12688 TPR_5: Tetratrico pep 98.6 9.1E-07 2E-11 72.2 12.4 94 116-209 2-103 (120)
173 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 7.7E-07 1.7E-11 88.6 14.5 118 90-207 174-294 (395)
174 PRK10803 tol-pal system protei 98.6 7E-07 1.5E-11 84.5 12.8 102 151-264 146-251 (263)
175 PF13424 TPR_12: Tetratricopep 98.6 2.6E-07 5.7E-12 70.3 8.3 74 178-259 2-75 (78)
176 PRK15331 chaperone protein Sic 98.6 8.4E-07 1.8E-11 75.1 11.6 96 15-110 32-130 (165)
177 KOG1941 Acetylcholine receptor 98.6 6.9E-06 1.5E-10 77.2 18.1 229 21-258 7-274 (518)
178 KOG3616 Selective LIM binding 98.6 0.00049 1.1E-08 70.9 32.4 362 53-492 647-1027(1636)
179 COG4785 NlpI Lipoprotein NlpI, 98.6 2.9E-06 6.2E-11 74.0 14.2 178 309-490 57-267 (297)
180 KOG0985 Vesicle coat protein c 98.5 0.0018 3.9E-08 69.4 37.1 216 27-265 1055-1314(1666)
181 COG3898 Uncharacterized membra 98.5 0.00044 9.6E-09 66.2 29.6 293 121-489 90-392 (531)
182 COG4105 ComL DNA uptake lipopr 98.5 1.9E-05 4.2E-10 71.9 19.8 166 18-205 32-228 (254)
183 PF14559 TPR_19: Tetratricopep 98.5 5.6E-07 1.2E-11 66.3 8.2 56 30-85 1-56 (68)
184 PRK10153 DNA-binding transcrip 98.5 3.5E-06 7.6E-11 88.1 16.4 138 112-265 334-488 (517)
185 KOG2300 Uncharacterized conser 98.5 0.00046 1E-08 67.9 29.0 392 88-490 10-475 (629)
186 KOG4648 Uncharacterized conser 98.5 3.2E-07 7E-12 85.2 6.7 101 152-267 102-202 (536)
187 KOG1914 mRNA cleavage and poly 98.5 0.0023 4.9E-08 64.2 40.0 417 9-450 9-503 (656)
188 COG4700 Uncharacterized protei 98.4 1.7E-05 3.7E-10 67.5 15.5 141 101-258 76-221 (251)
189 PF14559 TPR_19: Tetratricopep 98.4 1E-06 2.2E-11 64.9 7.3 65 362-427 2-67 (68)
190 COG4105 ComL DNA uptake lipopr 98.4 5.7E-05 1.2E-09 68.9 19.5 183 154-384 41-237 (254)
191 COG0457 NrfG FOG: TPR repeat [ 98.4 0.00039 8.3E-09 66.1 27.2 226 22-262 24-268 (291)
192 COG4700 Uncharacterized protei 98.4 4.8E-05 1E-09 64.9 17.2 133 35-168 71-214 (251)
193 PRK11906 transcriptional regul 98.4 8.8E-06 1.9E-10 80.6 14.8 153 355-515 259-430 (458)
194 KOG0543 FKBP-type peptidyl-pro 98.4 3.5E-06 7.6E-11 81.2 11.7 144 231-413 209-353 (397)
195 PRK10153 DNA-binding transcrip 98.4 2.1E-05 4.6E-10 82.3 18.1 137 20-181 339-487 (517)
196 KOG2796 Uncharacterized conser 98.4 0.0013 2.8E-08 59.7 26.2 277 18-383 19-318 (366)
197 PRK11906 transcriptional regul 98.3 3.9E-05 8.5E-10 76.1 18.4 160 20-206 255-432 (458)
198 COG1729 Uncharacterized protei 98.3 4.9E-06 1.1E-10 76.5 11.3 98 320-417 144-246 (262)
199 PF12688 TPR_5: Tetratrico pep 98.3 1E-05 2.3E-10 66.0 11.9 99 231-379 2-103 (120)
200 KOG4555 TPR repeat-containing 98.3 1.2E-05 2.6E-10 64.0 11.4 109 153-272 49-157 (175)
201 PF13512 TPR_18: Tetratricopep 98.3 2.2E-05 4.8E-10 65.1 13.5 67 19-85 9-78 (142)
202 PF10345 Cohesin_load: Cohesin 98.3 0.0097 2.1E-07 64.9 39.0 424 37-489 38-563 (608)
203 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 5.3E-06 1.1E-10 82.1 11.6 70 14-83 69-141 (453)
204 COG3118 Thioredoxin domain-con 98.3 6.1E-05 1.3E-09 69.8 17.2 128 19-146 133-267 (304)
205 KOG1914 mRNA cleavage and poly 98.3 0.0064 1.4E-07 61.1 33.1 398 103-517 8-497 (656)
206 PF13512 TPR_18: Tetratricopep 98.2 1.2E-05 2.6E-10 66.6 10.4 116 352-493 11-132 (142)
207 PF13424 TPR_12: Tetratricopep 98.2 6.8E-06 1.5E-10 62.4 8.3 71 420-490 6-76 (78)
208 KOG1586 Protein required for f 98.2 0.0019 4E-08 57.6 24.1 151 67-263 27-187 (288)
209 KOG0985 Vesicle coat protein c 98.2 0.015 3.2E-07 62.9 34.2 154 34-203 1034-1188(1666)
210 KOG4234 TPR repeat-containing 98.2 2.7E-05 5.8E-10 67.2 11.7 104 234-385 99-202 (271)
211 KOG1586 Protein required for f 98.2 7.8E-05 1.7E-09 66.1 14.6 200 324-526 41-264 (288)
212 PF07079 DUF1347: Protein of u 98.2 0.0098 2.1E-07 58.6 36.3 405 22-445 8-521 (549)
213 PF13371 TPR_9: Tetratricopept 98.2 1E-05 2.3E-10 60.4 7.8 57 156-212 4-60 (73)
214 COG0457 NrfG FOG: TPR repeat [ 98.1 0.00073 1.6E-08 64.1 22.8 193 20-212 59-267 (291)
215 KOG2610 Uncharacterized conser 98.1 0.00017 3.7E-09 67.4 16.7 161 324-487 110-274 (491)
216 PF13371 TPR_9: Tetratricopept 98.1 1E-05 2.2E-10 60.6 7.3 63 324-386 2-64 (73)
217 PF04184 ST7: ST7 protein; In 98.1 0.00014 3.1E-09 72.1 17.0 191 18-213 166-378 (539)
218 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 1E-05 2.2E-10 80.1 8.7 61 151-211 79-142 (453)
219 KOG1585 Protein required for f 98.1 0.00076 1.6E-08 60.5 19.1 220 231-532 32-263 (308)
220 PF08631 SPO22: Meiosis protei 98.1 0.0022 4.8E-08 62.2 24.4 251 191-487 3-273 (278)
221 PF10300 DUF3808: Protein of u 98.1 0.0047 1E-07 64.5 28.1 122 330-451 246-379 (468)
222 KOG4234 TPR repeat-containing 98.1 3.4E-05 7.3E-10 66.5 9.8 98 116-213 96-200 (271)
223 PF10300 DUF3808: Protein of u 98.1 0.0084 1.8E-07 62.6 29.4 157 326-490 197-377 (468)
224 KOG2796 Uncharacterized conser 98.0 0.0016 3.4E-08 59.1 19.0 222 21-264 70-320 (366)
225 KOG4648 Uncharacterized conser 98.0 5.6E-06 1.2E-10 77.2 3.5 101 23-150 100-200 (536)
226 PF10345 Cohesin_load: Cohesin 97.9 0.057 1.2E-06 58.9 34.5 314 114-437 58-467 (608)
227 PF13281 DUF4071: Domain of un 97.9 0.0035 7.7E-08 61.7 21.9 175 54-265 141-340 (374)
228 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.031 6.6E-07 55.1 35.3 432 15-493 37-535 (660)
229 PF05843 Suf: Suppressor of fo 97.9 0.0001 2.2E-09 71.5 10.8 150 354-508 4-155 (280)
230 COG2909 MalT ATP-dependent tra 97.8 0.071 1.5E-06 57.5 35.2 182 54-244 347-551 (894)
231 PF13281 DUF4071: Domain of un 97.8 0.0015 3.1E-08 64.4 17.7 173 319-493 143-338 (374)
232 PF13431 TPR_17: Tetratricopep 97.8 2.4E-05 5.2E-10 47.7 3.1 34 42-75 1-34 (34)
233 COG2976 Uncharacterized protei 97.8 0.0012 2.6E-08 57.4 14.5 129 20-149 53-193 (207)
234 KOG4555 TPR repeat-containing 97.8 0.00025 5.4E-09 56.7 9.1 92 356-448 48-144 (175)
235 KOG4507 Uncharacterized conser 97.8 0.00073 1.6E-08 68.0 14.5 98 116-213 213-315 (886)
236 KOG0545 Aryl-hydrocarbon recep 97.7 0.0013 2.9E-08 58.9 13.8 100 114-213 177-296 (329)
237 PF05843 Suf: Suppressor of fo 97.7 0.00068 1.5E-08 65.7 13.4 129 322-451 6-139 (280)
238 KOG1464 COP9 signalosome, subu 97.7 0.0014 3E-08 59.6 13.4 263 195-516 41-327 (440)
239 KOG0545 Aryl-hydrocarbon recep 97.6 0.0013 2.9E-08 58.9 12.5 120 230-384 178-297 (329)
240 KOG2041 WD40 repeat protein [G 97.6 0.12 2.6E-06 53.8 28.6 186 35-256 678-878 (1189)
241 PRK15180 Vi polysaccharide bio 97.6 0.092 2E-06 52.2 29.0 131 19-149 288-425 (831)
242 COG2909 MalT ATP-dependent tra 97.6 0.16 3.4E-06 54.9 33.8 177 18-196 344-552 (894)
243 KOG4642 Chaperone-dependent E3 97.6 0.00066 1.4E-08 60.7 10.3 95 120-214 15-111 (284)
244 PF13431 TPR_17: Tetratricopep 97.6 5.5E-05 1.2E-09 46.1 2.6 33 170-202 2-34 (34)
245 KOG1585 Protein required for f 97.6 0.025 5.3E-07 51.1 19.9 197 54-282 31-242 (308)
246 KOG1258 mRNA processing protei 97.6 0.13 2.7E-06 53.2 37.8 169 324-493 304-474 (577)
247 PF13428 TPR_14: Tetratricopep 97.6 0.00015 3.2E-09 47.6 4.8 42 21-62 2-43 (44)
248 PF06552 TOM20_plant: Plant sp 97.5 0.0016 3.5E-08 56.0 11.6 74 36-129 7-83 (186)
249 PF06552 TOM20_plant: Plant sp 97.5 0.00096 2.1E-08 57.4 9.9 87 163-264 7-114 (186)
250 COG3118 Thioredoxin domain-con 97.5 0.0098 2.1E-07 55.6 17.2 155 86-254 135-296 (304)
251 COG2976 Uncharacterized protei 97.5 0.0045 9.7E-08 54.0 14.0 121 328-449 64-189 (207)
252 KOG0890 Protein kinase of the 97.5 0.15 3.2E-06 61.0 30.0 306 23-393 1452-1796(2382)
253 KOG2610 Uncharacterized conser 97.5 0.017 3.6E-07 54.6 18.5 205 42-257 53-274 (491)
254 PF02259 FAT: FAT domain; Int 97.5 0.097 2.1E-06 53.1 26.5 71 177-258 142-212 (352)
255 PF07079 DUF1347: Protein of u 97.4 0.16 3.6E-06 50.3 39.4 120 56-175 8-156 (549)
256 KOG0890 Protein kinase of the 97.3 0.52 1.1E-05 56.6 31.0 146 59-205 1388-1542(2382)
257 PRK13184 pknD serine/threonine 97.3 0.5 1.1E-05 53.2 33.0 100 28-127 483-598 (932)
258 PF07719 TPR_2: Tetratricopept 97.3 0.00071 1.5E-08 41.4 4.8 33 231-263 2-34 (34)
259 PF00515 TPR_1: Tetratricopept 97.3 0.00058 1.3E-08 41.8 4.4 33 231-263 2-34 (34)
260 PF08424 NRDE-2: NRDE-2, neces 97.3 0.013 2.9E-07 58.0 16.2 151 339-490 7-184 (321)
261 PF02259 FAT: FAT domain; Int 97.3 0.16 3.4E-06 51.6 24.7 140 315-470 144-302 (352)
262 PF13428 TPR_14: Tetratricopep 97.2 0.00082 1.8E-08 44.0 5.2 42 352-394 2-43 (44)
263 PF09613 HrpB1_HrpK: Bacterial 97.2 0.015 3.2E-07 49.5 13.8 82 19-100 9-93 (160)
264 PF07719 TPR_2: Tetratricopept 97.2 0.00096 2.1E-08 40.8 4.7 33 116-148 2-34 (34)
265 PF04184 ST7: ST7 protein; In 97.2 0.043 9.2E-07 55.2 18.3 169 163-385 184-380 (539)
266 PF00515 TPR_1: Tetratricopept 97.2 0.0011 2.3E-08 40.6 4.8 33 116-148 2-34 (34)
267 PF08631 SPO22: Meiosis protei 97.1 0.28 6.1E-06 47.6 25.7 220 30-257 3-273 (278)
268 KOG1550 Extracellular protein 97.1 0.5 1.1E-05 50.9 27.4 173 35-211 227-427 (552)
269 KOG4642 Chaperone-dependent E3 97.1 0.0019 4.1E-08 57.8 7.5 89 156-259 19-107 (284)
270 KOG2041 WD40 repeat protein [G 97.1 0.54 1.2E-05 49.3 26.7 141 54-207 796-936 (1189)
271 TIGR02561 HrpB1_HrpK type III 97.0 0.022 4.8E-07 47.5 12.5 109 19-142 9-120 (153)
272 PF08424 NRDE-2: NRDE-2, neces 97.0 0.098 2.1E-06 51.9 19.6 159 103-261 7-185 (321)
273 KOG4507 Uncharacterized conser 96.9 0.17 3.8E-06 51.7 19.9 100 355-454 610-711 (886)
274 KOG1258 mRNA processing protei 96.9 0.68 1.5E-05 48.0 30.0 147 327-481 265-421 (577)
275 KOG0376 Serine-threonine phosp 96.9 0.0017 3.7E-08 64.5 5.9 103 21-150 5-107 (476)
276 PF03704 BTAD: Bacterial trans 96.8 0.027 5.8E-07 48.7 12.5 92 122-213 13-128 (146)
277 PF04910 Tcf25: Transcriptiona 96.8 0.05 1.1E-06 54.5 15.3 173 32-213 22-225 (360)
278 PF03704 BTAD: Bacterial trans 96.7 0.0083 1.8E-07 51.9 8.6 60 21-80 63-122 (146)
279 KOG1308 Hsp70-interacting prot 96.7 0.0014 3E-08 62.0 3.6 121 324-445 121-241 (377)
280 PF04910 Tcf25: Transcriptiona 96.7 0.099 2.1E-06 52.5 16.9 97 355-451 107-225 (360)
281 PF13181 TPR_8: Tetratricopept 96.7 0.0036 7.8E-08 38.2 4.1 32 231-262 2-33 (34)
282 KOG1464 COP9 signalosome, subu 96.6 0.38 8.3E-06 44.3 18.2 73 185-260 149-221 (440)
283 KOG0551 Hsp90 co-chaperone CNS 96.6 0.0088 1.9E-07 56.4 7.9 96 116-211 82-183 (390)
284 COG4649 Uncharacterized protei 96.6 0.27 5.8E-06 42.2 15.7 123 21-143 59-195 (221)
285 KOG1538 Uncharacterized conser 96.5 0.22 4.7E-06 51.6 17.6 48 28-80 564-611 (1081)
286 PF13176 TPR_7: Tetratricopept 96.5 0.0061 1.3E-07 37.7 4.4 31 183-213 1-31 (36)
287 PF13181 TPR_8: Tetratricopept 96.5 0.0074 1.6E-07 36.7 4.7 31 182-212 2-32 (34)
288 PRK13184 pknD serine/threonine 96.5 1.6 3.4E-05 49.4 25.5 94 120-214 480-585 (932)
289 PF04053 Coatomer_WDAD: Coatom 96.4 0.12 2.6E-06 53.3 15.7 160 26-207 267-428 (443)
290 KOG0376 Serine-threonine phosp 96.4 0.0038 8.3E-08 62.1 4.6 102 323-425 10-112 (476)
291 KOG1308 Hsp70-interacting prot 96.4 0.0026 5.5E-08 60.3 3.1 94 119-212 118-213 (377)
292 PRK11619 lytic murein transgly 96.3 2.2 4.7E-05 46.7 33.4 117 327-445 251-372 (644)
293 PF13174 TPR_6: Tetratricopept 96.3 0.0071 1.5E-07 36.5 3.9 32 117-148 2-33 (33)
294 PF12968 DUF3856: Domain of Un 96.3 0.066 1.4E-06 42.4 9.8 104 23-142 12-127 (144)
295 COG5107 RNA14 Pre-mRNA 3'-end 96.3 1 2.2E-05 45.0 19.9 210 41-263 289-535 (660)
296 PF13174 TPR_6: Tetratricopept 96.3 0.0087 1.9E-07 36.1 4.1 32 232-263 2-33 (33)
297 PF09613 HrpB1_HrpK: Bacterial 96.3 0.23 5E-06 42.5 13.8 70 363-433 22-92 (160)
298 COG0790 FOG: TPR repeat, SEL1 96.2 1.4 2.9E-05 43.3 22.4 179 63-261 50-268 (292)
299 KOG0551 Hsp90 co-chaperone CNS 96.2 0.036 7.8E-07 52.5 9.4 107 228-383 79-185 (390)
300 KOG1550 Extracellular protein 96.2 1.3 2.8E-05 47.8 22.6 141 101-261 228-395 (552)
301 PF13176 TPR_7: Tetratricopept 96.2 0.0097 2.1E-07 36.8 3.9 28 232-259 1-28 (36)
302 COG4649 Uncharacterized protei 96.1 0.31 6.8E-06 41.8 13.7 129 356-490 63-197 (221)
303 KOG1463 26S proteasome regulat 96.0 1.6 3.5E-05 41.9 22.0 214 21-259 5-238 (411)
304 PF14853 Fis1_TPR_C: Fis1 C-te 95.9 0.04 8.7E-07 37.3 6.1 42 22-63 3-44 (53)
305 PF10602 RPN7: 26S proteasome 95.8 0.23 5E-06 44.2 12.7 97 115-211 36-143 (177)
306 PF14561 TPR_20: Tetratricopep 95.8 0.087 1.9E-06 40.7 8.5 77 166-255 7-83 (90)
307 COG0790 FOG: TPR repeat, SEL1 95.7 2.1 4.4E-05 42.0 20.5 177 30-211 51-267 (292)
308 PF10602 RPN7: 26S proteasome 95.6 0.22 4.8E-06 44.3 11.7 105 386-491 36-144 (177)
309 PF09986 DUF2225: Uncharacteri 95.6 0.17 3.7E-06 46.5 11.3 80 181-262 118-197 (214)
310 KOG1538 Uncharacterized conser 95.5 0.51 1.1E-05 49.0 14.8 80 355-445 751-830 (1081)
311 KOG0530 Protein farnesyltransf 95.5 2.1 4.6E-05 39.6 21.0 126 123-263 51-180 (318)
312 TIGR02561 HrpB1_HrpK type III 95.3 0.75 1.6E-05 38.7 12.9 49 364-413 23-71 (153)
313 KOG3783 Uncharacterized conser 95.2 3 6.5E-05 42.9 19.1 71 422-492 452-523 (546)
314 PF12968 DUF3856: Domain of Un 95.1 1.3 2.9E-05 35.3 13.5 111 188-343 16-126 (144)
315 PRK10941 hypothetical protein; 95.0 0.17 3.8E-06 48.1 9.5 76 319-395 183-258 (269)
316 PF09986 DUF2225: Uncharacteri 94.6 0.41 8.8E-06 44.1 10.7 72 419-490 118-195 (214)
317 KOG2581 26S proteasome regulat 94.6 3.6 7.7E-05 40.7 16.9 132 19-150 123-282 (493)
318 PF08492 SRP72: SRP72 RNA-bind 94.6 0.022 4.8E-07 39.0 1.7 32 561-592 26-57 (59)
319 PF13374 TPR_10: Tetratricopep 94.5 0.09 1.9E-06 33.6 4.6 35 181-215 2-36 (42)
320 COG5159 RPN6 26S proteasome re 94.5 4.2 9.2E-05 38.1 21.3 214 24-259 7-235 (421)
321 PF04097 Nic96: Nup93/Nic96; 94.5 9.3 0.0002 41.8 25.0 373 84-492 110-536 (613)
322 PRK10941 hypothetical protein; 94.4 0.3 6.5E-06 46.5 9.5 63 151-213 185-247 (269)
323 PF14853 Fis1_TPR_C: Fis1 C-te 94.4 0.12 2.7E-06 34.9 5.0 35 116-150 2-36 (53)
324 KOG3807 Predicted membrane pro 94.3 3.8 8.2E-05 39.2 16.0 163 21-188 185-353 (556)
325 PF04053 Coatomer_WDAD: Coatom 94.2 3 6.5E-05 43.2 17.1 123 97-257 273-400 (443)
326 PF11207 DUF2989: Protein of u 94.2 1.7 3.6E-05 38.9 12.9 78 399-480 119-198 (203)
327 smart00028 TPR Tetratricopepti 94.2 0.092 2E-06 30.8 3.9 32 231-262 2-33 (34)
328 smart00028 TPR Tetratricopepti 94.1 0.095 2.1E-06 30.8 3.9 32 116-147 2-33 (34)
329 PF14561 TPR_20: Tetratricopep 94.1 0.58 1.2E-05 36.1 8.8 65 371-436 8-75 (90)
330 PF04781 DUF627: Protein of un 94.0 0.44 9.5E-06 37.8 8.1 45 165-209 62-106 (111)
331 PF10579 Rapsyn_N: Rapsyn N-te 94.0 0.37 7.9E-06 35.4 6.9 60 20-79 6-68 (80)
332 PRK11619 lytic murein transgly 93.7 13 0.00028 40.8 38.9 119 21-142 34-156 (644)
333 KOG2280 Vacuolar assembly/sort 93.7 12 0.00026 40.4 27.7 104 324-443 691-794 (829)
334 KOG1920 IkappaB kinase complex 93.5 2.7 6E-05 47.3 15.7 137 64-209 890-1027(1265)
335 PF13374 TPR_10: Tetratricopep 93.5 0.16 3.5E-06 32.3 4.3 29 231-259 3-31 (42)
336 KOG1839 Uncharacterized protei 93.4 1.2 2.7E-05 50.6 13.2 162 89-257 936-1126(1236)
337 COG5159 RPN6 26S proteasome re 93.4 7 0.00015 36.8 21.1 283 185-491 7-316 (421)
338 PF12862 Apc5: Anaphase-promot 93.4 0.55 1.2E-05 36.7 7.9 66 189-260 6-71 (94)
339 PF12862 Apc5: Anaphase-promot 93.3 0.79 1.7E-05 35.8 8.7 64 428-491 7-72 (94)
340 KOG4422 Uncharacterized conser 92.8 11 0.00025 37.6 38.4 453 15-510 111-612 (625)
341 PF13041 PPR_2: PPR repeat fam 92.4 0.64 1.4E-05 31.1 6.1 43 462-504 5-49 (50)
342 PRK15180 Vi polysaccharide bio 92.4 0.27 5.8E-06 49.1 5.7 122 327-449 299-421 (831)
343 PRK12798 chemotaxis protein; R 92.3 14 0.0003 37.2 19.8 205 324-534 119-336 (421)
344 KOG3824 Huntingtin interacting 92.2 0.55 1.2E-05 44.2 7.2 72 119-190 120-193 (472)
345 PF04781 DUF627: Protein of un 92.1 1 2.2E-05 35.8 7.5 40 324-363 3-45 (111)
346 KOG3364 Membrane protein invol 91.7 0.78 1.7E-05 37.7 6.6 65 321-385 36-105 (149)
347 KOG0530 Protein farnesyltransf 91.6 12 0.00025 35.0 15.3 174 239-431 52-233 (318)
348 PF07721 TPR_4: Tetratricopept 91.5 0.31 6.8E-06 27.3 3.1 24 116-139 2-25 (26)
349 KOG4814 Uncharacterized conser 91.4 22 0.00047 37.7 30.1 89 22-110 356-453 (872)
350 KOG2114 Vacuolar assembly/sort 91.3 26 0.00056 38.5 29.1 224 23-265 337-596 (933)
351 KOG0128 RNA-binding protein SA 91.2 27 0.00058 38.3 38.6 421 32-487 91-561 (881)
352 COG4976 Predicted methyltransf 91.0 0.48 1E-05 42.7 5.2 72 29-100 4-75 (287)
353 KOG1920 IkappaB kinase complex 90.9 35 0.00075 39.2 25.0 51 355-413 1003-1053(1265)
354 PF12854 PPR_1: PPR repeat 90.8 0.6 1.3E-05 28.2 4.1 28 53-80 6-33 (34)
355 KOG3783 Uncharacterized conser 90.8 23 0.00049 36.8 28.2 79 133-211 251-333 (546)
356 PF07721 TPR_4: Tetratricopept 90.5 0.5 1.1E-05 26.5 3.3 23 56-78 3-25 (26)
357 COG3629 DnrI DNA-binding trans 90.4 1.4 2.9E-05 42.0 8.1 60 21-80 154-213 (280)
358 TIGR03362 VI_chp_7 type VI sec 90.3 19 0.00041 35.2 16.7 172 22-212 101-281 (301)
359 PF14863 Alkyl_sulf_dimr: Alky 90.1 0.93 2E-05 38.3 6.0 52 19-70 69-120 (141)
360 KOG2422 Uncharacterized conser 90.0 14 0.00029 38.7 15.0 93 358-450 349-450 (665)
361 PF15015 NYD-SP12_N: Spermatog 90.0 1.8 3.9E-05 42.9 8.6 92 119-210 180-291 (569)
362 KOG3364 Membrane protein invol 89.5 6 0.00013 32.7 9.8 74 179-265 30-106 (149)
363 COG4976 Predicted methyltransf 89.4 0.61 1.3E-05 42.1 4.6 65 325-389 3-67 (287)
364 PF10255 Paf67: RNA polymerase 89.3 3.7 8.1E-05 41.5 10.6 61 151-211 126-194 (404)
365 KOG1310 WD40 repeat protein [G 89.0 1.6 3.5E-05 44.5 7.6 85 128-212 387-476 (758)
366 KOG1463 26S proteasome regulat 88.9 24 0.00052 34.4 23.6 129 119-257 8-155 (411)
367 PF11207 DUF2989: Protein of u 88.9 2.2 4.7E-05 38.2 7.7 71 367-438 122-197 (203)
368 PF12854 PPR_1: PPR repeat 88.9 0.88 1.9E-05 27.5 3.8 28 417-444 5-32 (34)
369 KOG2422 Uncharacterized conser 88.8 27 0.00058 36.6 16.1 168 33-212 251-450 (665)
370 KOG0276 Vesicle coat complex C 88.8 10 0.00022 39.7 13.2 154 29-209 595-749 (794)
371 KOG3824 Huntingtin interacting 88.6 2.1 4.5E-05 40.5 7.6 63 357-420 122-185 (472)
372 COG5191 Uncharacterized conser 88.4 0.9 1.9E-05 43.0 5.1 82 342-424 98-181 (435)
373 KOG1839 Uncharacterized protei 88.0 4 8.6E-05 46.8 10.7 179 19-217 931-1135(1236)
374 PF10516 SHNi-TPR: SHNi-TPR; 87.9 1.8 3.8E-05 27.0 4.6 32 182-213 2-33 (38)
375 PF07163 Pex26: Pex26 protein; 87.8 15 0.00032 34.8 12.5 120 22-170 36-181 (309)
376 PF04190 DUF410: Protein of un 87.4 27 0.0006 33.3 18.2 71 418-489 89-170 (260)
377 PF07720 TPR_3: Tetratricopept 87.4 2 4.2E-05 26.4 4.6 31 232-262 3-35 (36)
378 COG3629 DnrI DNA-binding trans 87.2 2.5 5.5E-05 40.3 7.5 67 387-453 154-221 (280)
379 PF09670 Cas_Cas02710: CRISPR- 87.1 12 0.00027 38.0 13.0 60 22-81 133-196 (379)
380 PF10255 Paf67: RNA polymerase 87.1 3.1 6.7E-05 42.1 8.4 68 183-257 124-191 (404)
381 KOG4279 Serine/threonine prote 86.5 33 0.00071 37.2 15.4 179 53-269 200-405 (1226)
382 PF10952 DUF2753: Protein of u 86.4 9.3 0.0002 30.9 8.9 75 183-257 3-77 (140)
383 COG1747 Uncharacterized N-term 86.4 44 0.00095 34.6 22.0 56 326-381 214-289 (711)
384 PF15015 NYD-SP12_N: Spermatog 85.8 12 0.00025 37.5 11.1 88 358-445 183-288 (569)
385 COG2912 Uncharacterized conser 85.8 6.8 0.00015 36.9 9.4 68 319-386 183-250 (269)
386 PF11817 Foie-gras_1: Foie gra 85.8 6.2 0.00013 37.5 9.6 83 404-487 163-245 (247)
387 PF07720 TPR_3: Tetratricopept 85.8 2.9 6.2E-05 25.7 4.7 30 117-146 3-34 (36)
388 KOG0276 Vesicle coat complex C 85.7 14 0.00031 38.7 12.2 19 325-343 729-747 (794)
389 KOG4318 Bicoid mRNA stability 85.4 67 0.0015 35.8 30.0 111 392-507 713-828 (1088)
390 PF04097 Nic96: Nup93/Nic96; 85.4 63 0.0014 35.5 19.3 22 151-172 262-283 (613)
391 PRK12798 chemotaxis protein; R 85.2 45 0.00098 33.7 21.7 225 151-443 84-319 (421)
392 PF04190 DUF410: Protein of un 84.4 39 0.00085 32.3 18.5 89 20-108 10-113 (260)
393 KOG1310 WD40 repeat protein [G 84.3 3.7 7.9E-05 42.0 7.3 111 16-150 370-480 (758)
394 TIGR03504 FimV_Cterm FimV C-te 83.9 2.3 5E-05 27.5 3.9 26 233-258 2-27 (44)
395 PF09477 Type_III_YscG: Bacter 83.6 20 0.00044 28.3 11.0 83 25-110 11-94 (116)
396 TIGR03504 FimV_Cterm FimV C-te 83.3 2.3 4.9E-05 27.5 3.7 27 185-211 3-29 (44)
397 PF13041 PPR_2: PPR repeat fam 83.3 4.8 0.00011 26.8 5.6 27 388-414 5-31 (50)
398 PF10516 SHNi-TPR: SHNi-TPR; 83.0 2.8 6.1E-05 26.1 3.8 30 231-260 2-31 (38)
399 COG4941 Predicted RNA polymera 82.9 49 0.0011 32.3 15.7 173 36-213 212-397 (415)
400 COG2912 Uncharacterized conser 82.8 5.5 0.00012 37.5 7.4 63 151-213 185-247 (269)
401 KOG0292 Vesicle coat complex C 82.8 52 0.0011 36.5 15.2 47 29-80 652-698 (1202)
402 COG4941 Predicted RNA polymera 82.7 48 0.001 32.3 13.5 153 334-492 213-397 (415)
403 KOG4814 Uncharacterized conser 82.6 73 0.0016 34.1 31.1 94 118-211 357-458 (872)
404 KOG3807 Predicted membrane pro 82.5 49 0.0011 32.1 17.9 32 230-261 275-306 (556)
405 PF10579 Rapsyn_N: Rapsyn N-te 82.5 11 0.00024 27.8 7.3 55 157-211 16-73 (80)
406 KOG0889 Histone acetyltransfer 82.3 1.8E+02 0.0039 38.3 23.3 130 356-492 2741-2886(3550)
407 KOG2581 26S proteasome regulat 82.1 59 0.0013 32.7 17.8 129 125-264 136-281 (493)
408 KOG2063 Vacuolar assembly/sort 82.1 97 0.0021 35.1 22.7 58 23-80 310-372 (877)
409 COG4455 ImpE Protein of avirul 82.0 25 0.00055 31.9 10.7 60 26-85 7-66 (273)
410 COG4455 ImpE Protein of avirul 81.5 9 0.0002 34.7 7.8 60 326-385 10-69 (273)
411 PF11817 Foie-gras_1: Foie gra 81.3 12 0.00025 35.6 9.4 68 181-257 178-245 (247)
412 KOG0686 COP9 signalosome, subu 80.9 39 0.00084 33.9 12.5 124 386-512 150-289 (466)
413 KOG1497 COP9 signalosome, subu 80.7 26 0.00056 33.8 10.9 23 423-445 148-170 (399)
414 KOG2561 Adaptor protein NUB1, 80.7 6.1 0.00013 39.5 7.1 87 56-142 165-294 (568)
415 KOG0529 Protein geranylgeranyl 80.0 69 0.0015 32.3 14.0 157 21-192 29-194 (421)
416 smart00386 HAT HAT (Half-A-TPR 79.5 4.7 0.0001 23.5 4.1 30 34-63 1-30 (33)
417 smart00299 CLH Clathrin heavy 79.5 37 0.0008 28.7 12.7 47 31-78 18-64 (140)
418 COG3947 Response regulator con 78.5 6.8 0.00015 37.1 6.4 56 25-80 284-339 (361)
419 KOG4279 Serine/threonine prote 78.5 8.9 0.00019 41.1 7.9 172 319-492 203-398 (1226)
420 COG3914 Spy Predicted O-linked 78.3 45 0.00097 35.2 12.7 99 393-492 74-174 (620)
421 PF01535 PPR: PPR repeat; Int 78.3 3.5 7.6E-05 23.7 3.2 27 117-143 2-28 (31)
422 COG3947 Response regulator con 78.1 8.2 0.00018 36.5 6.8 61 388-448 281-342 (361)
423 PF00244 14-3-3: 14-3-3 protei 77.9 49 0.0011 31.1 12.2 169 320-488 4-197 (236)
424 TIGR02508 type_III_yscG type I 77.8 31 0.00068 26.9 10.4 76 32-110 17-93 (115)
425 KOG2066 Vacuolar assembly/sort 77.5 1.2E+02 0.0026 33.4 30.2 169 25-209 361-533 (846)
426 PF09797 NatB_MDM20: N-acetylt 77.3 35 0.00076 34.7 12.1 111 366-485 198-311 (365)
427 PF09670 Cas_Cas02710: CRISPR- 77.3 60 0.0013 33.1 13.6 125 321-449 135-271 (379)
428 KOG2062 26S proteasome regulat 77.1 1.2E+02 0.0026 33.2 28.3 41 57-97 213-254 (929)
429 KOG2758 Translation initiation 76.5 77 0.0017 30.7 15.6 66 15-80 124-193 (432)
430 COG1747 Uncharacterized N-term 75.1 1.1E+02 0.0024 31.9 21.1 60 19-80 65-124 (711)
431 PF04348 LppC: LppC putative l 74.9 0.95 2.1E-05 48.3 0.0 55 321-375 28-85 (536)
432 COG3914 Spy Predicted O-linked 74.9 1.2E+02 0.0026 32.2 14.7 116 336-452 50-175 (620)
433 COG5187 RPN7 26S proteasome re 74.5 82 0.0018 30.1 12.9 33 227-259 112-144 (412)
434 PF09797 NatB_MDM20: N-acetylt 74.0 28 0.0006 35.4 10.3 107 401-514 198-308 (365)
435 TIGR00756 PPR pentatricopeptid 73.9 5.5 0.00012 23.6 3.3 26 56-81 2-27 (35)
436 KOG2063 Vacuolar assembly/sort 72.8 46 0.001 37.5 12.0 168 321-488 508-712 (877)
437 smart00299 CLH Clathrin heavy 72.8 57 0.0012 27.5 12.2 76 363-444 19-94 (140)
438 PF01535 PPR: PPR repeat; Int 72.6 6 0.00013 22.7 3.2 27 463-489 3-29 (31)
439 TIGR00756 PPR pentatricopeptid 72.0 8.9 0.00019 22.6 4.0 28 117-144 2-29 (35)
440 PF13812 PPR_3: Pentatricopept 71.8 10 0.00022 22.3 4.2 28 117-144 3-30 (34)
441 cd00280 TRFH Telomeric Repeat 71.2 75 0.0016 28.2 12.5 39 151-190 115-153 (200)
442 COG5191 Uncharacterized conser 70.0 19 0.00041 34.5 7.1 77 111-187 103-182 (435)
443 KOG0128 RNA-binding protein SA 69.0 1.9E+02 0.0042 32.1 29.3 194 17-211 110-342 (881)
444 PF09205 DUF1955: Domain of un 68.2 35 0.00075 28.3 7.3 55 157-211 96-150 (161)
445 PF04840 Vps16_C: Vps16, C-ter 68.0 1.3E+02 0.0029 29.8 29.5 103 324-443 184-286 (319)
446 PF12739 TRAPPC-Trs85: ER-Golg 66.9 1E+02 0.0023 31.9 12.8 158 320-491 211-401 (414)
447 KOG2066 Vacuolar assembly/sort 66.7 2.1E+02 0.0046 31.6 20.0 54 90-143 361-420 (846)
448 PF13812 PPR_3: Pentatricopept 66.6 11 0.00025 22.1 3.6 27 55-81 2-28 (34)
449 TIGR02508 type_III_yscG type I 66.3 62 0.0013 25.4 8.0 69 59-141 26-94 (115)
450 KOG0066 eIF2-interacting prote 66.2 1.4 3E-05 43.9 -1.0 13 654-666 71-83 (807)
451 KOG2908 26S proteasome regulat 65.9 1.4E+02 0.0031 29.3 15.2 158 360-522 84-263 (380)
452 smart00386 HAT HAT (Half-A-TPR 64.8 13 0.00029 21.4 3.7 28 162-189 2-29 (33)
453 PHA02537 M terminase endonucle 63.6 26 0.00057 32.4 6.7 34 116-149 170-212 (230)
454 cd02680 MIT_calpain7_2 MIT: do 63.3 16 0.00035 26.9 4.3 18 242-259 18-35 (75)
455 PF10037 MRP-S27: Mitochondria 63.3 1.2E+02 0.0027 31.2 12.1 61 115-175 103-166 (429)
456 PF07163 Pex26: Pex26 protein; 61.5 1.5E+02 0.0033 28.3 11.4 123 359-483 43-181 (309)
457 PF12583 TPPII_N: Tripeptidyl 60.4 36 0.00079 28.0 6.1 36 31-66 87-122 (139)
458 PF00637 Clathrin: Region in C 60.2 1.6 3.5E-05 37.3 -1.6 78 30-107 17-105 (143)
459 PF08311 Mad3_BUB1_I: Mad3/BUB 60.2 99 0.0021 25.6 12.0 77 130-208 41-126 (126)
460 PF10938 YfdX: YfdX protein; 59.9 78 0.0017 27.4 8.7 59 151-209 79-145 (155)
461 COG2178 Predicted RNA-binding 59.9 1.3E+02 0.0028 27.0 13.2 75 183-257 71-148 (204)
462 PF09477 Type_III_YscG: Bacter 59.3 90 0.0019 24.9 7.8 18 388-405 42-59 (116)
463 TIGR02710 CRISPR-associated pr 59.2 2.1E+02 0.0045 29.1 12.9 64 16-79 124-196 (380)
464 KOG0686 COP9 signalosome, subu 59.2 2.1E+02 0.0045 29.0 17.5 100 229-378 149-256 (466)
465 KOG1524 WD40 repeat-containing 59.2 94 0.002 32.4 10.0 91 15-110 568-669 (737)
466 KOG4563 Cell cycle-regulated h 58.9 19 0.00041 35.4 5.1 57 18-74 39-103 (400)
467 KOG4121 Nuclear pore complex, 58.5 94 0.002 35.2 10.6 54 57-112 775-828 (1128)
468 PF00637 Clathrin: Region in C 57.8 7.3 0.00016 33.2 2.1 54 361-414 17-70 (143)
469 KOG2062 26S proteasome regulat 56.9 3.1E+02 0.0067 30.3 29.0 54 327-382 367-426 (929)
470 COG3014 Uncharacterized protei 56.7 2.1E+02 0.0045 28.3 11.3 24 237-260 201-224 (449)
471 KOG1114 Tripeptidyl peptidase 55.0 2.2E+02 0.0048 32.3 12.5 50 245-296 1090-1139(1304)
472 TIGR03362 VI_chp_7 type VI sec 54.5 2.2E+02 0.0048 27.9 13.0 121 329-450 111-281 (301)
473 PF13934 ELYS: Nuclear pore co 54.2 1.1E+02 0.0024 28.5 9.3 103 71-174 63-167 (226)
474 cd02681 MIT_calpain7_1 MIT: do 53.9 31 0.00068 25.5 4.5 32 198-259 4-35 (76)
475 KOG2280 Vacuolar assembly/sort 53.8 3.5E+02 0.0075 30.0 25.2 102 359-483 692-793 (829)
476 KOG4014 Uncharacterized conser 53.5 1.6E+02 0.0035 26.1 10.8 96 114-211 33-142 (248)
477 PF11846 DUF3366: Domain of un 53.4 17 0.00038 32.9 3.9 47 404-450 129-175 (193)
478 PRK15490 Vi polysaccharide bio 53.1 1.1E+02 0.0023 33.0 9.8 86 324-412 15-100 (578)
479 PF12739 TRAPPC-Trs85: ER-Golg 52.5 2.9E+02 0.0062 28.7 16.6 33 232-264 210-242 (414)
480 PF10938 YfdX: YfdX protein; 51.1 1.6E+02 0.0036 25.4 10.5 23 151-173 121-143 (155)
481 COG4499 Predicted membrane pro 50.9 1.1E+02 0.0023 30.5 8.7 77 64-140 258-338 (434)
482 cd02683 MIT_1 MIT: domain cont 49.3 48 0.001 24.6 4.9 17 476-492 29-45 (77)
483 PHA02537 M terminase endonucle 48.2 74 0.0016 29.6 7.0 31 462-492 171-210 (230)
484 PF10952 DUF2753: Protein of u 47.6 78 0.0017 25.9 6.0 76 118-210 4-79 (140)
485 COG3107 LppC Putative lipoprot 47.2 1.6E+02 0.0035 30.9 9.6 55 358-412 70-125 (604)
486 KOG2659 LisH motif-containing 47.1 2.2E+02 0.0047 26.4 9.6 58 23-80 29-90 (228)
487 PF04348 LppC: LppC putative l 47.0 6.4 0.00014 42.2 0.0 56 388-443 26-85 (536)
488 cd02684 MIT_2 MIT: domain cont 46.2 49 0.0011 24.4 4.6 34 196-259 2-35 (75)
489 KOG0546 HSP90 co-chaperone CPR 46.1 43 0.00093 32.9 5.3 112 122-248 229-361 (372)
490 PF00244 14-3-3: 14-3-3 protei 45.4 2.7E+02 0.0058 26.2 16.3 60 21-80 2-63 (236)
491 cd02682 MIT_AAA_Arch MIT: doma 45.1 53 0.0012 24.2 4.5 27 232-258 8-34 (75)
492 PF14863 Alkyl_sulf_dimr: Alky 44.8 1.2E+02 0.0025 25.8 7.2 46 352-398 71-116 (141)
493 PF15297 CKAP2_C: Cytoskeleton 44.5 1.8E+02 0.0038 28.9 9.1 61 23-83 105-169 (353)
494 COG3014 Uncharacterized protei 44.3 3.3E+02 0.0071 27.0 16.4 29 183-211 127-155 (449)
495 PF13934 ELYS: Nuclear pore co 43.9 2.7E+02 0.0059 25.9 13.8 49 61-110 85-133 (226)
496 PF10037 MRP-S27: Mitochondria 43.7 2.2E+02 0.0048 29.5 10.3 80 333-414 82-166 (429)
497 cd02679 MIT_spastin MIT: domai 43.6 48 0.001 24.8 4.1 17 242-258 20-36 (79)
498 cd02678 MIT_VPS4 MIT: domain c 43.3 58 0.0013 24.0 4.7 33 197-259 3-35 (75)
499 PF01239 PPTA: Protein prenylt 43.3 66 0.0014 18.6 4.4 28 39-66 2-29 (31)
500 cd02682 MIT_AAA_Arch MIT: doma 43.2 1.3E+02 0.0029 22.2 6.4 29 20-48 6-34 (75)
No 1
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-85 Score=632.05 Aligned_cols=594 Identities=50% Similarity=0.715 Sum_probs=514.0
Q ss_pred CcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--chhhhHHHHHHH
Q 005990 18 PPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKF--TFDFNYLKAYCL 95 (666)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~a~~~ 95 (666)
.++++++..++.+..+|+|++|++.++++|...|++.++++++.+|+++.++|++|+.+++.-... .....|++|||+
T Consensus 10 ~~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 10 DNLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCE 89 (652)
T ss_pred ccHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHH
Confidence 356899999999999999999999999999999999999999999999999999999888876432 233447999999
Q ss_pred HHhCCHHHHHHHHHhcC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH----HHHHHHHHHcCChhHHHHHH
Q 005990 96 YRQNRLDEALESLKIQE-NNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE----INFVAGLISAGRASEVQKTL 170 (666)
Q Consensus 96 ~~~g~~~~A~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~l~~~~~~~g~~~~A~~~~ 170 (666)
|++|+.++|+..++... .+..++++.||++|++|+|++|+.+|+.+++.+.++.+ .|+.++-. ...+. .+
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~ 164 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LL 164 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HH
Confidence 99999999999999743 46679999999999999999999999999998877776 34333322 11222 33
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHH
Q 005990 171 DSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAF 250 (666)
Q Consensus 171 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~ 250 (666)
+..-....++++.+||.||+++..|+|.+|++.+++++.+|.+.+..++..+++++.++..+.++|+++++.+|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 44334445699999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHc
Q 005990 251 GAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHA 330 (666)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~ 330 (666)
.+|..++..++.|....+++.||++++.++.++++.. -+.........+++.+...++..|+..++.|.+.+.+..
T Consensus 245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~----~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGD----LLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHhcCCCchHHHHHhcchhhhccccccCchH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998887741 111122335666777788999999999999999999999
Q ss_pred CChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHh
Q 005990 331 NKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLA 410 (666)
Q Consensus 331 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~ 410 (666)
+..+++.++.......+|......+.......+...+.+|+.++....+.+|.+...+.+.++++.+.+|++..|++++.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999999988777777777777777899999999999999999877789999999999999999999999
Q ss_pred --------cCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHH
Q 005990 411 --------KIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHL 482 (666)
Q Consensus 411 --------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 482 (666)
.+.+....|+++..+..+|++.++.+.|..++.+|+.+|.........+..++..++.+.++.|+.++|...
T Consensus 401 ~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred HHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 777777799999999999999999999999999999999998887888888999999999999999999999
Q ss_pred HHHHHHhcCC-hHHHHHHHHhhccCChhhHHHHHhcCCCCCCCCCCChHHHhhccCCCcccccccccccccccCCCchhh
Q 005990 483 FEELVKTHGS-IEALVGLVTTSAHVDVDKAESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESASYFEVNEAHGEGKNKDK 561 (666)
Q Consensus 483 ~~~~l~~~p~-~~~l~~l~~~~~~~d~~~a~~~~~~l~~~~~~~~~d~~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (666)
++++++.+|+ .+.++++|.+|+.+|+++|+.+.+.|+|.+.+.+||||.||.+.|++++++...+.............+
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~k~L~p~~~l~~vdVd~LE~s~ga~~~~~~k~ta~S~~~~~~~~~~k 560 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARLDPEKAESLSKKLPPLKGLKAVDVDALEKSDGAKYSEAYKKTAVSQVEEKKSKELK 560 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHhhcCCCcccchhcCchHhhhccCcchhhhhccccccchhhccchhhh
Confidence 9999998876 788999999999999999999999999999888999999999989888766311111111222221223
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCccchhhhhccCCCCCCcccccc
Q 005990 562 AKKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRAAQVRGSQGAVVREKH 623 (666)
Q Consensus 562 ~k~k~kr~~~~~k~~~p~~~~~~pdpERwlp~~~Rs~~~~~~~~~~~~~~~~~qg~~~~~~~ 623 (666)
+|++||||.++||||||. ++||||||||++|||+||||||+|++++++|||||++...+
T Consensus 561 KKk~rKrkgk~pknyn~~---~tPDPERWLP~reRS~yr~KrK~k~~~~~kgtQG~~~~~~s 619 (652)
T KOG2376|consen 561 KKKKRKRKGKLPKNYNPK---VTPDPERWLPRRERSTYRPKRKGKRAAIIKGTQGGAANDKS 619 (652)
T ss_pred hhcccccccCCcccCCCC---CCCChhhcccchhccccCcccccchhhhhccccccccccch
Confidence 334588899999999997 99999999999999999999998887789999999986543
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-38 Score=308.63 Aligned_cols=444 Identities=14% Similarity=0.096 Sum_probs=393.9
Q ss_pred CCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch---hhhHHHHH
Q 005990 17 PPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF---DFNYLKAY 93 (666)
Q Consensus 17 p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~a~ 93 (666)
+..-.+.+..+...++.|+|.+|++.++.+-..+|.+.+.+..++.++++..+++.....-..+.+..+ +.+-.+|.
T Consensus 45 ~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN 124 (966)
T KOG4626|consen 45 HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLAN 124 (966)
T ss_pred CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHH
Confidence 344456888999999999999999999999999999999999999999999999998887777765544 45667899
Q ss_pred HHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHH
Q 005990 94 CLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQ 167 (666)
Q Consensus 94 ~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~ 167 (666)
++-..|++++|+..++. .|+...+|..+|-++...|+.+.|..+|..+++.+|+... .+++..+-..|+..+|.
T Consensus 125 ~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhH
Confidence 99999999999998876 6778999999999999999999999999999999999877 88899999999999999
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChH
Q 005990 168 KTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQ 247 (666)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 247 (666)
.+|.+++...|.-..+|.++|+++...|+...|+..|++|+.++|. +.++|++||.+|-..+.|+
T Consensus 205 ~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~---------------f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 205 ACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN---------------FLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc---------------chHHHhhHHHHHHHHhcch
Confidence 9999999999999999999999999999999999999999999954 4579999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHhHHHHHHhhhhhccC-CCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHH
Q 005990 248 EAFGAYTDIIKRNLADESSFAVAVNNLVALKG-PKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLL 326 (666)
Q Consensus 248 eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~ 326 (666)
+|+..|.+++...|+.. ++..|+.++.. ......++..+++.++..++- ...+.|++..
T Consensus 270 ~Avs~Y~rAl~lrpn~A----~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F----------------~~Ay~NlanA 329 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPNHA----VAHGNLACIYYEQGLLDLAIDTYKRALELQPNF----------------PDAYNNLANA 329 (966)
T ss_pred HHHHHHHHHHhcCCcch----hhccceEEEEeccccHHHHHHHHHHHHhcCCCc----------------hHHHhHHHHH
Confidence 99999999999999875 55566665443 445557777777666553321 1245778999
Q ss_pred HHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHH
Q 005990 327 LLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAA 406 (666)
Q Consensus 327 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~ 406 (666)
+-..|+..+|..++.+++...|...++...+|.++...|++++|..+|..+++.+|+... +...++.+|.++|++++|+
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aa-a~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAA-AHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhh-hhhhHHHHHHhcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999765 8999999999999999999
Q ss_pred HHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHH
Q 005990 407 ESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEE 485 (666)
Q Consensus 407 ~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 485 (666)
..|+.++.+.| ....+..+|..|..+|+.+.|+..|.+|+...| .+......+|.+|-..|+..+|+..|++
T Consensus 409 ~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP-------t~AeAhsNLasi~kDsGni~~AI~sY~~ 481 (966)
T KOG4626|consen 409 MCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP-------TFAEAHSNLASIYKDSGNIPEAIQSYRT 481 (966)
T ss_pred HHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc-------HHHHHHhhHHHHhhccCCcHHHHHHHHH
Confidence 99999999999 777889999999999999999999999998764 4455888999999999999999999999
Q ss_pred HHHhcCC-hHHHHHHHHhh
Q 005990 486 LVKTHGS-IEALVGLVTTS 503 (666)
Q Consensus 486 ~l~~~p~-~~~l~~l~~~~ 503 (666)
++++.|| .++..+++.++
T Consensus 482 aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 482 ALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHccCCCCchhhhHHHHHH
Confidence 9999999 66665555554
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-36 Score=295.61 Aligned_cols=370 Identities=16% Similarity=0.104 Sum_probs=330.1
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhh---HHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFN---YLK 91 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~ 91 (666)
..|.-.+.+-..++.+-..|++++|+..++.++++.|++.++|..+|.+|...|+.+.|.+.|..+..++|..+ -..
T Consensus 111 ~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~l 190 (966)
T KOG4626|consen 111 KNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDL 190 (966)
T ss_pred ccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcch
Confidence 45566666767889999999999999999999999999999999999999999999999999999988887543 367
Q ss_pred HHHHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhH
Q 005990 92 AYCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASE 165 (666)
Q Consensus 92 a~~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~ 165 (666)
+..+-..|++++|..++.+ .|....+|..||-++...|+...|+..|+++++++|...+ +|||.+|-..+.+++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 7778889999998887766 4567788999999999999999999999999999998877 999999999999999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCC
Q 005990 166 VQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGN 245 (666)
Q Consensus 166 A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 245 (666)
|+.+|.+++...|....++-|+|++|..+|..+-|+..|++++++.|. +..++.+||..+-..|+
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~---------------F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN---------------FPDAYNNLANALKDKGS 335 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC---------------chHHHhHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999998854 34689999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHH
Q 005990 246 TQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVL 325 (666)
Q Consensus 246 ~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~ 325 (666)
..||..+|.+++.+.|+.. ++ ..|++.
T Consensus 336 V~ea~~cYnkaL~l~p~ha--------------------da---------------------------------m~NLgn 362 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCPNHA--------------------DA---------------------------------MNNLGN 362 (966)
T ss_pred hHHHHHHHHHHHHhCCccH--------------------HH---------------------------------HHHHHH
Confidence 9999999999998888664 11 256699
Q ss_pred HHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHH
Q 005990 326 LLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIA 405 (666)
Q Consensus 326 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A 405 (666)
++...|.+++|..+|..++..+|+-..++..+|.+|.++|++++|+..|+.++...|.... ++..++..|-.+|+.+.|
T Consensus 363 i~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd-a~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD-ALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH-HHHhcchHHHHhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999655 899999999999999999
Q ss_pred HHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 005990 406 AESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAM 453 (666)
Q Consensus 406 ~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~ 453 (666)
++.+.+++.++| ..+....|+.+|...|+..+|+..|+.++.+.|+.+
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 999999999999 778899999999999999999999999999876554
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.1e-33 Score=319.56 Aligned_cols=448 Identities=13% Similarity=0.105 Sum_probs=281.4
Q ss_pred HHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccc---hhhhHHHHHHHHHhCCHH
Q 005990 26 SLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFT---FDFNYLKAYCLYRQNRLD 102 (666)
Q Consensus 26 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~a~~~~~~g~~~ 102 (666)
.+..+...|++++|+.++++++...|+++.++..+|.++...|++++|+..|+++.... ...++.++.++...|+++
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHH
Confidence 33444444444444444444444445555555555555555555555555555553322 234445555555555555
Q ss_pred HHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhc
Q 005990 103 EALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVK 176 (666)
Q Consensus 103 ~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 176 (666)
+|+..++. .|.+..++..++.++...|++++|+.+|++++..+|.+.. ..++.++...|++++|+..+++++..
T Consensus 517 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 517 DAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 55555544 3445555555555555555555555555555555555444 45555566666666666666666665
Q ss_pred CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 005990 177 ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDI 256 (666)
Q Consensus 177 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~ 256 (666)
.|.+.+.++.+|.++...|++++|+..|++++...+.. ..++..+|.++...|++++|+.+|+++
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS---------------ALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666666666666666666666555321 135566666666666666666666666
Q ss_pred HhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHH
Q 005990 257 IKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQA 336 (666)
Q Consensus 257 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A 336 (666)
+..+|.+...+......+... .+...+...++.+....+ ....+....+.++...|++++|
T Consensus 662 ~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 662 LELKPDNTEAQIGLAQLLLAA---KRTESAKKIAKSLQKQHP----------------KAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCc----------------CChHHHHHHHHHHHHCCCHHHH
Confidence 666666554433332222221 122344444433322211 1122344557778888888888
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCC
Q 005990 337 RELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ 416 (666)
Q Consensus 337 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 416 (666)
+..+..++...|++ ..+..++.++...|++++|+..+++++...|++.. +++.++.++...|++++|+.+|+++++..
T Consensus 723 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 723 IQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAV-LRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 88888888887776 56667778888888888888888888888888654 77888888888888888888888888888
Q ss_pred C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC-hH
Q 005990 417 H-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IE 494 (666)
Q Consensus 417 ~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~ 494 (666)
| ++.++..+++++...|+ .+|+.++++++...+++. .++..+|.++...|++++|..+|+++++.+|+ ..
T Consensus 801 p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 872 (899)
T TIGR02917 801 PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIP-------AILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAA 872 (899)
T ss_pred CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Confidence 7 77778888888888888 778888888887653322 26667788888888888888888888888876 44
Q ss_pred HHHHHHHhh-ccCChhhHHHHHhc
Q 005990 495 ALVGLVTTS-AHVDVDKAESYEKR 517 (666)
Q Consensus 495 ~l~~l~~~~-~~~d~~~a~~~~~~ 517 (666)
....++.++ ...+.+.|..+.++
T Consensus 873 ~~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 873 IRYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555555 45666777766544
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.5e-32 Score=311.59 Aligned_cols=460 Identities=14% Similarity=0.132 Sum_probs=297.6
Q ss_pred CCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch---hhhHHHH
Q 005990 16 PPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF---DFNYLKA 92 (666)
Q Consensus 16 ~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~a 92 (666)
.|.+...+...+..+...|++++|+.++++++..+|++..++..++.++...|++++|+..|.++....+ ...+.++
T Consensus 359 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 438 (899)
T TIGR02917 359 DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLI 438 (899)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHH
Confidence 3444555556666666666666666666666666666666666666666666666666666666644332 3444556
Q ss_pred HHHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHH
Q 005990 93 YCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEV 166 (666)
Q Consensus 93 ~~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A 166 (666)
.++.+.|++++|+.+++. .|.++.++..+|.++...|++++|+.+|++++...|++.. .+++.++...|++++|
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 666667777777666655 3456667777777777777777777777777777776665 6677777777777777
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCCh
Q 005990 167 QKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNT 246 (666)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 246 (666)
+..|++++...|.+..++..++.++...|++++|+.+|++++...+.. . ..++.++.++...|++
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~-----~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 519 IQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQE----------I-----EPALALAQYYLGKGQL 583 (899)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----------h-----hHHHHHHHHHHHCCCH
Confidence 777777777777777777777777777777777777777777766321 1 3566677777777777
Q ss_pred HHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHH
Q 005990 247 QEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLL 326 (666)
Q Consensus 247 ~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~ 326 (666)
++|+.+++.++...|.+...+......+.. ..++..+...++.++...+. .......++.+
T Consensus 584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~l~~~ 644 (899)
T TIGR02917 584 KKALAILNEAADAAPDSPEAWLMLGRAQLA---AGDLNKAVSSFKKLLALQPD----------------SALALLLLADA 644 (899)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCC----------------ChHHHHHHHHH
Confidence 777777777777666665444333222222 22333555555444332111 11233455666
Q ss_pred HHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHH
Q 005990 327 LLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAA 406 (666)
Q Consensus 327 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~ 406 (666)
+...|++++|...++++...+|++...+..++.++...|++++|+.+++.+....|.+.. .+..++.++...|++++|+
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL-GFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChH-HHHHHHHHHHHCCCHHHHH
Confidence 777777777777777777777777777777777777777777777777777777666544 5666777777777777777
Q ss_pred HHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHH
Q 005990 407 ESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEEL 486 (666)
Q Consensus 407 ~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 486 (666)
..|++++...|+...+..++.++...|++++|...+++++...|++ ..++..+|.++...|++++|..+|+++
T Consensus 724 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 724 QAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPND-------AVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 7777777766655566667777777777777777777776654322 235566677777777777777777777
Q ss_pred HHhcCC-hHHHHHHHHhhccCChhhHHHHHhc
Q 005990 487 VKTHGS-IEALVGLVTTSAHVDVDKAESYEKR 517 (666)
Q Consensus 487 l~~~p~-~~~l~~l~~~~~~~d~~~a~~~~~~ 517 (666)
+..+|+ ...+..+...+...+..+|..+.++
T Consensus 797 ~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~ 828 (899)
T TIGR02917 797 VKKAPDNAVVLNNLAWLYLELKDPRALEYAEK 828 (899)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 777776 3333334444332222445555443
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.3e-31 Score=305.83 Aligned_cols=492 Identities=16% Similarity=0.101 Sum_probs=327.1
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHH----------------HHHHHHHHHcCCHHHHHHHHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAM----------------RCKVVALIKADNIDDALSTIQ 78 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~----------------~~~~~~~~~~g~~~~A~~~~~ 78 (666)
.+|+++..++..+..+...|++++|.+.++++++.+|++..++ ..++.++...|++++|+..|+
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~ 136 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYD 136 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 4677777777777777777888888888888888877776653 344556777788888888877
Q ss_pred hhhccchhhhHHHHHHHH-----HhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---
Q 005990 79 SSQKFTFDFNYLKAYCLY-----RQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKI--- 146 (666)
Q Consensus 79 ~~~~~~~~~~~~~a~~~~-----~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--- 146 (666)
++....+... .++..|+ ..|++++|+..|++ .|++..++..+|.+++..|++++|+..|++++...+
T Consensus 137 ~~l~~~p~~~-~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~ 215 (1157)
T PRK11447 137 KLFNGAPPEL-DLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRD 215 (1157)
T ss_pred HHccCCCCCh-HHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchH
Confidence 7755433211 1111222 24788888887776 577888999999999999999999999998765322
Q ss_pred -------------------------------ChhH----------------------HHHHHHHHHcCChhHHHHHHHHh
Q 005990 147 -------------------------------DSLE----------------------INFVAGLISAGRASEVQKTLDSL 173 (666)
Q Consensus 147 -------------------------------~~~~----------------------~~l~~~~~~~g~~~~A~~~~~~~ 173 (666)
+... ..++.++...|++++|+..|+++
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~a 295 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQA 295 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1100 02256677789999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHH
Q 005990 174 RVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAY 253 (666)
Q Consensus 174 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~ 253 (666)
+..+|++.++++.+|.++...|++++|+.+|++++++.+........ ..-+..........+|.++...|++++|+..|
T Consensus 296 L~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~-~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 296 VRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW-ESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH-HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999988653210000 00000000012233455555555566666666
Q ss_pred HHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhh---------------cCCCHHH---
Q 005990 254 TDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD---------------LRLSPKQ--- 315 (666)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~---------------~~~~~~q--- 315 (666)
++++..+|.+..........+.. ..++..+...+++++...+........+. ..+...+
T Consensus 375 ~~Al~~~P~~~~a~~~Lg~~~~~---~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 375 QQARQVDNTDSYAVLGLGDVAMA---RKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 55555555554332222111111 12233444444444433222111000000 0000000
Q ss_pred --------HHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHH
Q 005990 316 --------REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI 387 (666)
Q Consensus 316 --------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~ 387 (666)
....+...+.++...|++++|+..+++++..+|++..+++.++.++...|++++|+..|++++...|++..
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~- 530 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE- 530 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-
Confidence 01134456788899999999999999999999999999999999999999999999999999999998654
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhcCcC----------------------------------------CCC-ChhHHHHHH
Q 005990 388 ILLARAQVAAAANHPFIAAESLAKIPD----------------------------------------IQH-MPATVATLV 426 (666)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~l~~~~~----------------------------------------~~~-~~~~~~~l~ 426 (666)
.++.++.++...|++++|+.+|+++.. ..| ++.++..++
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La 610 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLA 610 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHH
Confidence 555555555556666666666555421 234 555667788
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCCh-HHHHHHHHhh-c
Q 005990 427 ALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI-EALVGLVTTS-A 504 (666)
Q Consensus 427 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~l~~l~~~~-~ 504 (666)
.+|...|++++|+..|+++++..|++. ..+..++.++...|++++|+.+|++++...|+. .....+..++ .
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~P~~~-------~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~ 683 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTREPGNA-------DARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAA 683 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHh
Confidence 888888888888888888887754332 367778888888888888888888888877762 2233333333 4
Q ss_pred cCChhhHHHHHhcCC
Q 005990 505 HVDVDKAESYEKRLK 519 (666)
Q Consensus 505 ~~d~~~a~~~~~~l~ 519 (666)
..+.++|.++.+.+.
T Consensus 684 ~g~~~eA~~~~~~al 698 (1157)
T PRK11447 684 LGDTAAAQRTFNRLI 698 (1157)
T ss_pred CCCHHHHHHHHHHHh
Confidence 566777777666543
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3e-31 Score=306.15 Aligned_cols=433 Identities=14% Similarity=0.127 Sum_probs=349.6
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhh-----------------
Q 005990 25 TSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDF----------------- 87 (666)
Q Consensus 25 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----------------- 87 (666)
..+..+...|++++|+..|+++++.+|++.+++..+|.++.++|++++|+..|+++....+..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 346778889999999999999999999999999999999999999999999999997654421
Q ss_pred hHHHHHHHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcC
Q 005990 88 NYLKAYCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAG 161 (666)
Q Consensus 88 ~~~~a~~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g 161 (666)
....+.++...|++++|+..+++ .|.+..++..+|.++...|++++|+..|+++++.+|++.. ..++.++. .+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hc
Confidence 12457788899999999999987 5778899999999999999999999999999999999877 66777764 46
Q ss_pred ChhHHHHHHHHhhhcCCC---------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhH
Q 005990 162 RASEVQKTLDSLRVKATS---------SFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPI 232 (666)
Q Consensus 162 ~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (666)
++++|+..++.+....+. ..+.+..+|.++...|++++|+..|++++.+.|.. ..+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~---------------~~~ 497 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS---------------VWL 497 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHH
Confidence 789999988776443221 13456789999999999999999999999999542 258
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCC
Q 005990 233 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLS 312 (666)
Q Consensus 233 ~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~ 312 (666)
++.+|.+|...|++++|+..|++++...|.+......... .+....+...++..++.+.....+. ....+...+
T Consensus 498 ~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al---~l~~~~~~~~Al~~l~~l~~~~~~~--~~~~l~~~l- 571 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGL---YLSGSDRDRAALAHLNTLPRAQWNS--NIQELAQRL- 571 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH---HHHhCCCHHHHHHHHHhCCchhcCh--hHHHHHHHH-
Confidence 8999999999999999999999999999988765433221 1222334446666665443211000 000000000
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHH
Q 005990 313 PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLAR 392 (666)
Q Consensus 313 ~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~l 392 (666)
........+..+...|++++|+.+++ .+|++...++.+|.++...|++++|+..|++++...|++.. +++.+
T Consensus 572 ---~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~-a~~~l 643 (1157)
T PRK11447 572 ---QSDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD-ARLGL 643 (1157)
T ss_pred ---hhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 11123456788999999999999987 57888889999999999999999999999999999999765 89999
Q ss_pred HHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Q 005990 393 AQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKL 471 (666)
Q Consensus 393 a~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 471 (666)
+.++...|++++|+..|++++...| ++.+...++.++...|++++|..+|++++...+.... ......++..+|.++.
T Consensus 644 a~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~-~~~~a~~~~~~a~~~~ 722 (1157)
T PRK11447 644 IEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP-SMESALVLRDAARFEA 722 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc-chhhHHHHHHHHHHHH
Confidence 9999999999999999999999888 7788889999999999999999999999987644332 1122346667899999
Q ss_pred hCCChhhHHHHHHHHHH
Q 005990 472 RHGREEDASHLFEELVK 488 (666)
Q Consensus 472 ~~g~~~~A~~~~~~~l~ 488 (666)
..|++++|+..|++++.
T Consensus 723 ~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 723 QTGQPQQALETYKDAMV 739 (1157)
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 99999999999999985
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=4.5e-30 Score=278.69 Aligned_cols=425 Identities=13% Similarity=0.048 Sum_probs=286.8
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch---hhhHHHHHHHHH
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF---DFNYLKAYCLYR 97 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~a~~~~~ 97 (666)
..+...++.++..|+|++|+..|++++...|+ +..+..+|.||..+|+|++|+..+.++..++| ..++.+|.+|..
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 45678899999999999999999999999995 77899999999999999999999999977755 478899999999
Q ss_pred hCCHHHHHHHHHhc---CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHH
Q 005990 98 QNRLDEALESLKIQ---EN-NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLD 171 (666)
Q Consensus 98 ~g~~~~A~~~l~~~---~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 171 (666)
+|++++|+..+... +. +......+...++ ...+...+..++...|.+.. ..++..+ .......+...+.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 281 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLL----KKFAESKAKEILETKPENLPSVTFVGNYL-QSFRPKPRPAGLE 281 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH----HHHHHHHHHHHHhcCCCCCCCHHHHHHHH-HHccCCcchhhhh
Confidence 99999999877552 11 1111111111111 12444555555565555443 3333322 2222222333333
Q ss_pred HhhhcCCChHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHH
Q 005990 172 SLRVKATSSFELAYNTACSLA---EMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQE 248 (666)
Q Consensus 172 ~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~e 248 (666)
.....++.....+..++..+. ..++|++|+.+|++++...... +....++..+|.++..+|++++
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~------------~~~a~a~~~lg~~~~~~g~~~e 349 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG------------EKEAIALNLRGTFKCLKGKHLE 349 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC------------hhhHHHHHHHHHHHHHcCCHHH
Confidence 334444444444455554433 3467888888888887764110 2233577888888888888888
Q ss_pred HHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHH
Q 005990 249 AFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLL 328 (666)
Q Consensus 249 A~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~ 328 (666)
|+..|++++..+|.... .+.+++.++.
T Consensus 350 A~~~~~kal~l~P~~~~-----------------------------------------------------~~~~la~~~~ 376 (615)
T TIGR00990 350 ALADLSKSIELDPRVTQ-----------------------------------------------------SYIKRASMNL 376 (615)
T ss_pred HHHHHHHHHHcCCCcHH-----------------------------------------------------HHHHHHHHHH
Confidence 88888888877775431 1123366777
Q ss_pred HcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHH
Q 005990 329 HANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAES 408 (666)
Q Consensus 329 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (666)
..|++++|+..+++++..+|++..+++.+|.++...|++++|+..|++++..+|++.. .+..++.++...|++++|+..
T Consensus 377 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~-~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF-SHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH-HHHHHHHHHHHCCCHHHHHHH
Confidence 7888888888888888888888888888888888888888888888888888887654 677788888888888888888
Q ss_pred HhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHH
Q 005990 409 LAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELV 487 (666)
Q Consensus 409 l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 487 (666)
|++++...| ++.++..+|.++...|++++|+..|++++...+...........++...+.++...|++++|..+|++++
T Consensus 456 ~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 456 FRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 888887777 6777778888888888888888888888877654322112222222222233334678888888888888
Q ss_pred HhcCCh-HHHHHHHHhh-ccCChhhHHHHHhc
Q 005990 488 KTHGSI-EALVGLVTTS-AHVDVDKAESYEKR 517 (666)
Q Consensus 488 ~~~p~~-~~l~~l~~~~-~~~d~~~a~~~~~~ 517 (666)
..+|+. .++..+...+ ...+.+.|..+..+
T Consensus 536 ~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 536 IIDPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 888773 2334444443 45566666665443
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.98 E-value=5.1e-29 Score=270.48 Aligned_cols=399 Identities=14% Similarity=0.095 Sum_probs=304.2
Q ss_pred CCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchh---hhHHHH
Q 005990 16 PPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFD---FNYLKA 92 (666)
Q Consensus 16 ~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~a 92 (666)
.|+ ...++..+.++...|+|++|+..|+++++++|++..+++.+|.+|..+|+|++|+..|..+....+. ......
T Consensus 157 ~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
T TIGR00990 157 KPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV 235 (615)
T ss_pred CCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 343 4568889999999999999999999999999999999999999999999999999999876433221 111111
Q ss_pred HHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHH---HcCChhHHH
Q 005990 93 YCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLI---SAGRASEVQ 167 (666)
Q Consensus 93 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~---~~g~~~~A~ 167 (666)
..++.......+...++..+.+...+..++..+. ......+...+......++.... ..++..+. ..+.+++|+
T Consensus 236 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 236 ERLLKKFAESKAKEILETKPENLPSVTFVGNYLQ-SFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH-HccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence 1112222235566666667776666667766542 22233333334433333333222 33333222 257899999
Q ss_pred HHHHHhhhc---CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcC
Q 005990 168 KTLDSLRVK---ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLG 244 (666)
Q Consensus 168 ~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 244 (666)
..|++++.. .|....+++++|.+++.+|++++|+..|++++.+.|. ...+++.+|.++...|
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~---------------~~~~~~~la~~~~~~g 379 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR---------------VTQSYIKRASMNLELG 379 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------cHHHHHHHHHHHHHCC
Confidence 999999875 4677788999999999999999999999999998843 2358899999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHH
Q 005990 245 NTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRV 324 (666)
Q Consensus 245 ~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a 324 (666)
++++|+..|++++..+|.+.. ++++++
T Consensus 380 ~~~eA~~~~~~al~~~p~~~~-----------------------------------------------------~~~~lg 406 (615)
T TIGR00990 380 DPDKAEEDFDKALKLNSEDPD-----------------------------------------------------IYYHRA 406 (615)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-----------------------------------------------------HHHHHH
Confidence 999999999999988886641 123447
Q ss_pred HHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhH
Q 005990 325 LLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFI 404 (666)
Q Consensus 325 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~ 404 (666)
.+++..|++++|+..|++++..+|++...++.+|.++...|++++|+..|++++..+|.+.. ++..++.++...|++++
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~-~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD-VYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHccCHHH
Confidence 88889999999999999999999999999999999999999999999999999999998655 88889999999999999
Q ss_pred HHHHHhcCcCCCC-ChhH-------HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCCh
Q 005990 405 AAESLAKIPDIQH-MPAT-------VATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGRE 476 (666)
Q Consensus 405 A~~~l~~~~~~~~-~~~~-------~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 476 (666)
|+..|++++++.| .... +...+.++...|++++|..++++++...|.. ..++..+|.+++..|++
T Consensus 486 A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~-------~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 486 AIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC-------DIAVATMAQLLLQQGDV 558 (615)
T ss_pred HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHHccCH
Confidence 9999999988877 2221 1222334445799999999999998864322 23677889999999999
Q ss_pred hhHHHHHHHHHHhcCC
Q 005990 477 EDASHLFEELVKTHGS 492 (666)
Q Consensus 477 ~~A~~~~~~~l~~~p~ 492 (666)
++|+.+|++++++.+.
T Consensus 559 ~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 559 DEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999998875
No 10
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.5e-28 Score=250.47 Aligned_cols=450 Identities=14% Similarity=0.124 Sum_probs=271.6
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhhhccchh-------
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSD-EDAMRCKVVALIKADNIDDALSTIQSSQKFTFD------- 86 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------- 86 (666)
++|+++..|+.+|...+..++|-.|+.+|..+|.++|.. ++....+|.|+.++|+.+.|+..|.++.+++|.
T Consensus 159 ~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~ 238 (1018)
T KOG2002|consen 159 QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVA 238 (1018)
T ss_pred hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHH
Confidence 689999999999999999999999999999999999986 788899999999999999999999999666553
Q ss_pred ---------------------------------hhHHHHHHHHHhCCHHHHHHHHHhcCC-------ChhHHHHHHHHHH
Q 005990 87 ---------------------------------FNYLKAYCLYRQNRLDEALESLKIQEN-------NPATMLLKSQILY 126 (666)
Q Consensus 87 ---------------------------------~~~~~a~~~~~~g~~~~A~~~l~~~~~-------~~~~~~~la~~~~ 126 (666)
+...++.-+|.-|+|+.+..+...... -...++++|..|.
T Consensus 239 L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 239 LGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 222223334445555555554443111 2344667777777
Q ss_pred HcCCHHHHHHHHHHHHhhCCChhH---HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhc----CHHH
Q 005990 127 RSGEMDACVEFYQKLQKSKIDSLE---INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMN----KYTE 199 (666)
Q Consensus 127 ~~g~~~~A~~~~~~~l~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~ 199 (666)
.+|+|++|..+|.++++.++++.. +.+|.+++..|+++.+..+|++++...|++++++..+|++|...+ ..+.
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 777777777777777776666633 667777777777777777777777777777777777777777665 4456
Q ss_pred HHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHhHHHHHHhhhhhcc
Q 005990 200 AEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRN-LADESSFAVAVNNLVALK 278 (666)
Q Consensus 200 A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~ 278 (666)
|..++.+++...+ .|. .+|+.+|+++....-+.. +..|..++..- .....+-....||+.++.
T Consensus 399 a~~~l~K~~~~~~----------~d~-----~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTP----------VDS-----EAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred HHHHHHHHHhccc----------ccH-----HHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 6666666666552 222 577777777765544444 77777766321 000011123345544433
Q ss_pred C-CCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHH
Q 005990 279 G-PKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQ 357 (666)
Q Consensus 279 ~-~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 357 (666)
- ..++..+...+.+.+.... +......+......+.||++.++-..++++.|.+.|..+++.+|.....++.+
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~------~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl 536 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLL------EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRL 536 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhh------hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHh
Confidence 2 2233344444443332200 00000000011133567777777777777777777777777666555554444
Q ss_pred HHHHHhhCChh---------------------------------------------------------------------
Q 005990 358 AAVLVRENKAG--------------------------------------------------------------------- 368 (666)
Q Consensus 358 a~~~~~~g~~~--------------------------------------------------------------------- 368 (666)
+.+....+...
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 43333333333
Q ss_pred -------------HHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCC
Q 005990 369 -------------KAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGD 434 (666)
Q Consensus 369 -------------~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~ 434 (666)
+|+.+|.+++..+|.|.. +-..+|.++...|++.+|..+|.++.+... .+.+|..+|.+|..+|+
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~y-AANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRNDPKNMY-AANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcCcchhh-hccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH
Confidence 445555555555555433 344445555555555555555555544333 44555566666666666
Q ss_pred hhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC
Q 005990 435 IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 435 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
|..|++.|+.++..+-.. ....++..||.+++..|.+.+|.+.+..++...|.
T Consensus 696 y~~AIqmYe~~lkkf~~~-----~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKK-----NRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHHHHHHhccc-----CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 666666666665544211 11125555666666666666666666666666655
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=1.3e-27 Score=258.09 Aligned_cols=371 Identities=13% Similarity=0.083 Sum_probs=244.0
Q ss_pred CcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHH
Q 005990 18 PPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYR 97 (666)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~ 97 (666)
++...+..-+..+...|++++|+.+++.++...|++.++++.+++++...|++++|+..|+++...
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~-------------- 105 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV-------------- 105 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--------------
Confidence 344556677788889999999999999999999999999999999999999999999999998444
Q ss_pred hCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhh
Q 005990 98 QNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRV 175 (666)
Q Consensus 98 ~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 175 (666)
.|++..++..+|.++...|++++|+..|++++..+|++.. ..++.++...|++++|+..+++++.
T Consensus 106 -------------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 106 -------------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred -------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 4556666666777777777777777777777766666655 5666666667777777777766666
Q ss_pred cCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHH
Q 005990 176 KATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTD 255 (666)
Q Consensus 176 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~ 255 (666)
..|++.++++.++ .+...|++++|+..+++++...+.. .. .....++.++...|++++|+..|++
T Consensus 173 ~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~--------~~------~~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 173 EVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALE--------RQ------ESAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred hCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCc--------ch------hHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666666655543 3566677777777776666554210 00 1334455666667777777777777
Q ss_pred HHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHH
Q 005990 256 IIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQ 335 (666)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~ 335 (666)
++..+|.+.. +..+++.++...|++++
T Consensus 238 al~~~p~~~~-----------------------------------------------------~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 238 ALARGLDGAA-----------------------------------------------------LRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHhcCCCCHH-----------------------------------------------------HHHHHHHHHHHcCCchh
Confidence 7666664421 11223566666666664
Q ss_pred ----HHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhc
Q 005990 336 ----ARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAK 411 (666)
Q Consensus 336 ----A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 411 (666)
|+..+++++...|++..++..+|.++...|++++|+..+++++..+|++.. ++..++.++...|++++|+..|++
T Consensus 265 A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~-a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY-VRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566777777777776666777777777777777777777777777776544 566667777777777777777777
Q ss_pred CcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHH
Q 005990 412 IPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEEL 486 (666)
Q Consensus 412 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 486 (666)
++...| .+.....++.++...|++++|+..|+++++..|+... ..+......+..++...+...+...++.++
T Consensus 344 al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~--~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~ 417 (656)
T PRK15174 344 LAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP--QSFEEGLLALDGQISAVNLPPERLDWAWEV 417 (656)
T ss_pred HHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch--hhHHHHHHHHHHHHHhcCCccchhhHHHHH
Confidence 666666 3344444566666777777777777777666554432 122223334444444444443333333333
No 12
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=4.1e-27 Score=259.88 Aligned_cols=418 Identities=11% Similarity=0.005 Sum_probs=332.5
Q ss_pred CCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccc---hhhhHHHHH
Q 005990 17 PPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFT---FDFNYLKAY 93 (666)
Q Consensus 17 p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~a~ 93 (666)
|-+...+..-+.++.-.|++++|+..+.+++..+|....++..++.++...|++++|+.+++++.... +.+.+.++.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 33444555556667888999999999999999889999999999999999999999999999986554 467789999
Q ss_pred HHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHH
Q 005990 94 CLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQ 167 (666)
Q Consensus 94 ~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~ 167 (666)
++...|++++|+..+++ .|++.. +..+|.++...|++++|+..|++++...|++.+ ..++.++...+..++|+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 99999999999999887 677888 999999999999999999999999999999888 77888888899999999
Q ss_pred HHHHHhhhcCCChH-----HHHHHHHHHHH-----HhcCH---HHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHH
Q 005990 168 KTLDSLRVKATSSF-----ELAYNTACSLA-----EMNKY---TEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAV 234 (666)
Q Consensus 168 ~~~~~~~~~~~~~~-----~~~~~la~~~~-----~~g~~---~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (666)
..++++.. .|+.. .....+..++. ..+++ ++|+..|+.++...+.. |+.. +.+..+.+
T Consensus 171 ~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~-------p~~~-~~~~~a~~ 241 (765)
T PRK10049 171 GAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDN-------PDAT-ADYQRARI 241 (765)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccC-------Cccc-hHHHHHHH
Confidence 99998776 44321 12222233332 22345 78999999998875432 1111 12223444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHH
Q 005990 235 QLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPK 314 (666)
Q Consensus 235 ~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 314 (666)
....++...|++++|+..|++++...+..+. .+.
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-------------------~a~--------------------------- 275 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPP-------------------WAQ--------------------------- 275 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-------------------HHH---------------------------
Confidence 3233446779999999999999877543221 000
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCC----chHHHHHHHHHHhhCChhHHHHHHHHHHhhCCCh------
Q 005990 315 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDS----VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK------ 384 (666)
Q Consensus 315 q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~------ 384 (666)
...+.+++..|++++|+..|++++...|.+ ......++.++...|++++|+.+++.+....|..
T Consensus 276 ------~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~ 349 (765)
T PRK10049 276 ------RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS 349 (765)
T ss_pred ------HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC
Confidence 112678899999999999999998877765 2345556667889999999999999999887631
Q ss_pred --------hHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccC
Q 005990 385 --------SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTE 455 (666)
Q Consensus 385 --------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~ 455 (666)
...+++.++.++...|++++|+.+|++++...| ++.++..++.++...|++++|+..|++++...|++..
T Consensus 350 ~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~- 428 (765)
T PRK10049 350 PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN- 428 (765)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH-
Confidence 123677899999999999999999999999999 9999999999999999999999999999998754432
Q ss_pred cchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCChHHHHHHHHhh
Q 005990 456 DNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTS 503 (666)
Q Consensus 456 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~l~~l~~~~ 503 (666)
++...|..++..|++++|...++++++..|++..+..+-..+
T Consensus 429 ------l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 429 ------LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred ------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 777889999999999999999999999999966554444433
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.4e-27 Score=240.79 Aligned_cols=442 Identities=12% Similarity=0.079 Sum_probs=322.7
Q ss_pred CCCCCcHHHHHHHHHHHhhh---ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccc------
Q 005990 14 SQPPPPIEDLFTSLNRHIER---SEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFT------ 84 (666)
Q Consensus 14 ~~~p~~~~~l~~~~~~~~~~---~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~------ 84 (666)
+.+|.++.++..++...... ..+..++..+.++...++.|+.++..++.-++-.|+|+.++.+...+....
T Consensus 227 qLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~ 306 (1018)
T KOG2002|consen 227 QLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIK 306 (1018)
T ss_pred hcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHH
Confidence 46788899888888776544 457789999999999999999999999999999999999999998884432
Q ss_pred hhhhHHHHHHHHHhCCHHHHHHHHHh----cCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHH
Q 005990 85 FDFNYLKAYCLYRQNRLDEALESLKI----QENN-PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGL 157 (666)
Q Consensus 85 ~~~~~~~a~~~~~~g~~~~A~~~l~~----~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~ 157 (666)
...+|.+|.+|..+|+|++|..+|.+ .+++ .-.++.+||++...|+++.|+.+|++++...|++.+ .-||.+|
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence 45688999999999999999999877 3444 667889999999999999999999999999999887 4555555
Q ss_pred HHcC----ChhHHHHHHHHhhhcCCC--------------------------------------hHHHHHHHHHHHHHhc
Q 005990 158 ISAG----RASEVQKTLDSLRVKATS--------------------------------------SFELAYNTACSLAEMN 195 (666)
Q Consensus 158 ~~~g----~~~~A~~~~~~~~~~~~~--------------------------------------~~~~~~~la~~~~~~g 195 (666)
...+ ..+.|..++.+++...|. .++.+.|+|..++..|
T Consensus 387 a~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g 466 (1018)
T KOG2002|consen 387 AHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLG 466 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhc
Confidence 5443 234444444444433333 3556778888888889
Q ss_pred CHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhh
Q 005990 196 KYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLV 275 (666)
Q Consensus 196 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~ 275 (666)
++..|...|..|+..+..... .++-..-.....+++|.++..+++++.|.+.|..+++.+|.......... .
T Consensus 467 ~~~~A~~~f~~A~~~~~~~~n-----~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~---~ 538 (1018)
T KOG2002|consen 467 NIEKALEHFKSALGKLLEVAN-----KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG---C 538 (1018)
T ss_pred ChHHHHHHHHHHhhhhhhhcC-----ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh---H
Confidence 999999999988887432111 11100112357899999999999999999999999999997665443332 1
Q ss_pred hccCCCChhHHHHHhHHHhhhhhhhhhhh---H------------------HhhcCCCHHHHHHHHHHHHHHHH------
Q 005990 276 ALKGPKDVNDSLKKLDRIKEKDMQNFQLA---R------------------VLDLRLSPKQREAIYANRVLLLL------ 328 (666)
Q Consensus 276 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~---~------------------~l~~~~~~~q~~~~~~~~a~~~~------ 328 (666)
......+..++...+..++..+...+... . .+....+. ...-....++.+++
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~-~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK-TDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC-CchhHHHHhhHHHHHHhccc
Confidence 11222233455555555444322111110 0 00000000 01111122233332
Q ss_pred ------HcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCCh
Q 005990 329 ------HANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHP 402 (666)
Q Consensus 329 ------~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~ 402 (666)
..+.++.|+.+|.++++.+|.+..+-...|.++...|++.+|+.+|.++.+-..++. ++|+.+|.||..+|+|
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~-dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFE-DVWLNLAHCYVEQGQY 696 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCC-ceeeeHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999999999999887655433 3899999999999999
Q ss_pred hHHHHHHhcCcCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHh
Q 005990 403 FIAAESLAKIPDIQH---MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR 472 (666)
Q Consensus 403 ~~A~~~l~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 472 (666)
..|++.|+..+.... ++.++..|+.++++.|.+.+|...+..|+...|.+ ..+.+.+|.++.+
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~-------~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN-------TSVKFNLALVLKK 762 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc-------chHHhHHHHHHHH
Confidence 999999999876543 88999999999999999999999999998876432 2366666666544
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=1.6e-26 Score=249.64 Aligned_cols=323 Identities=14% Similarity=0.038 Sum_probs=274.1
Q ss_pred HHHHhCCHHHHHHHHH----hcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHH
Q 005990 94 CLYRQNRLDEALESLK----IQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQ 167 (666)
Q Consensus 94 ~~~~~g~~~~A~~~l~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~ 167 (666)
.+.+.|++++|+.+++ ..|++..+++.++.++...|++++|+..|++++..+|++.. ..++.++...|++++|+
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 3334444444444333 36788999999999999999999999999999999999887 88899999999999999
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChH
Q 005990 168 KTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQ 247 (666)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 247 (666)
..|++++..+|++..++..++.++...|++++|+..+++++...+.. . .++..++ .+...|+++
T Consensus 131 ~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~----------~-----~a~~~~~-~l~~~g~~~ 194 (656)
T PRK15174 131 DLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR----------G-----DMIATCL-SFLNKSRLP 194 (656)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC----------H-----HHHHHHH-HHHHcCCHH
Confidence 99999999999999999999999999999999999999998887542 1 2343433 478899999
Q ss_pred HHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHH
Q 005990 248 EAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLL 327 (666)
Q Consensus 248 eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~ 327 (666)
+|+..+++++...|.+.. . .....+.++
T Consensus 195 eA~~~~~~~l~~~~~~~~-------------------~---------------------------------~~~~l~~~l 222 (656)
T PRK15174 195 EDHDLARALLPFFALERQ-------------------E---------------------------------SAGLAVDTL 222 (656)
T ss_pred HHHHHHHHHHhcCCCcch-------------------h---------------------------------HHHHHHHHH
Confidence 999999999877653210 0 001125667
Q ss_pred HHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhH----HHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChh
Q 005990 328 LHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGK----AEELLGQFAEKLPDKSKIILLARAQVAAAANHPF 403 (666)
Q Consensus 328 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~----A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~ 403 (666)
...|++++|+..+.+++...|++..++..+|.++...|++++ |+..|++++..+|++.. ++..++.++...|+++
T Consensus 223 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~-a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 223 CAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR-IVTLYADALIRTGQNE 301 (656)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHCCCHH
Confidence 889999999999999999999999999999999999999986 89999999999999765 8999999999999999
Q ss_pred HHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHH
Q 005990 404 IAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHL 482 (666)
Q Consensus 404 ~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 482 (666)
+|+..+++++...| ++.++..++.+|...|++++|+..|++++...|.. ...+..+|.++...|++++|+..
T Consensus 302 eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~-------~~~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 302 KAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT-------SKWNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999 88889999999999999999999999998875432 12444568899999999999999
Q ss_pred HHHHHHhcCC
Q 005990 483 FEELVKTHGS 492 (666)
Q Consensus 483 ~~~~l~~~p~ 492 (666)
|+++++.+|+
T Consensus 375 l~~al~~~P~ 384 (656)
T PRK15174 375 FEHYIQARAS 384 (656)
T ss_pred HHHHHHhChh
Confidence 9999999987
No 15
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.7e-24 Score=211.14 Aligned_cols=520 Identities=19% Similarity=0.144 Sum_probs=314.6
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYC 94 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~ 94 (666)
..|+...++.+.+..+++.+.|++|+.+.+.-....-.+ ...+.+++|.+++++.++|+..++-+...+..+....|.+
T Consensus 41 ~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQv 119 (652)
T KOG2376|consen 41 IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQV 119 (652)
T ss_pred cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHH
Confidence 457889999999999999999999996655433222222 2337999999999999999999997777777788899999
Q ss_pred HHHhCCHHHHHHHHHhcC-C---C--h-hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-hhH--HHHHHHHHHcCChh
Q 005990 95 LYRQNRLDEALESLKIQE-N---N--P-ATMLLKSQILYRSGEMDACVEFYQKLQKSKID-SLE--INFVAGLISAGRAS 164 (666)
Q Consensus 95 ~~~~g~~~~A~~~l~~~~-~---~--~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~--~~l~~~~~~~g~~~ 164 (666)
+|++|+|++|+++|+... + + . .-..+++..-...+ . ..+.....|+ +.+ +|.+.+++..|+|.
T Consensus 120 lYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~------~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~ 192 (652)
T KOG2376|consen 120 LYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV------Q-LLQSVPEVPEDSYELLYNTACILIENGKYN 192 (652)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH------H-HHHhccCCCcchHHHHHHHHHHHHhcccHH
Confidence 999999999999998731 1 1 1 11122222211111 1 2333334444 344 99999999999999
Q ss_pred HHHHHHHHhhhcC--------C--Ch-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhh
Q 005990 165 EVQKTLDSLRVKA--------T--SS-----FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIEL 229 (666)
Q Consensus 165 ~A~~~~~~~~~~~--------~--~~-----~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 229 (666)
+|++.+++++..+ . +. ..+...++.++..+|+.++|...|...+..++.. + +.+
T Consensus 193 qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D---------~--~~~ 261 (652)
T KOG2376|consen 193 QAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD---------E--PSL 261 (652)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC---------c--hHH
Confidence 9999999983311 1 11 2256789999999999999999999999988531 1 223
Q ss_pred hhHHHHHHHHHHHcCChH-HHHHHHHHHHhhCCC-------CHhHHHHHHhhhhhccCCCChhHHHHHh-HHHhhhhhhh
Q 005990 230 APIAVQLAYVQQLLGNTQ-EAFGAYTDIIKRNLA-------DESSFAVAVNNLVALKGPKDVNDSLKKL-DRIKEKDMQN 300 (666)
Q Consensus 230 ~~~~~~la~~~~~~g~~~-eA~~~~~~~l~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~a~~~l-~~~~~~~~~~ 300 (666)
+.+.++|..+-..+.-++ .++..++......+. ......+..|+.+.... .+..+..+.+ ..+
T Consensus 262 Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~-tnk~~q~r~~~a~l------- 333 (652)
T KOG2376|consen 262 AVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF-TNKMDQVRELSASL------- 333 (652)
T ss_pred HHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHhC-------
Confidence 334444433322222222 122222222111110 00111122222211100 0101111111 100
Q ss_pred hhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCC-chHHHHHHHHHHhhCChhHHHHHHH----
Q 005990 301 FQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS-VMPLLLQAAVLVRENKAGKAEELLG---- 375 (666)
Q Consensus 301 ~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~---- 375 (666)
... .+.....+... .........+..+.+++......+|.. ..+.+.++++...+|++..|+..+.
T Consensus 334 -------p~~-~p~~~~~~ll~-~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 334 -------PGM-SPESLFPILLQ-EATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred -------Ccc-CchHHHHHHHH-HHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 000 00000111111 222233337889999999999999987 5788899999999999999999999
Q ss_pred ----HHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC--------ChhHHHHHHHHHHHcCChhHHHHHHH
Q 005990 376 ----QFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH--------MPATVATLVALKERAGDIDGAAAVLD 443 (666)
Q Consensus 376 ----~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~l~ 443 (666)
.+.+.. +..++.-.+..++...++.+-|..++.+++.... ...++..++.+..+.|+.++|..+++
T Consensus 405 ~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 405 SWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred hhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 333332 2234566677788888888888888887754321 22345677888889999999999999
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCChHHHHHHHHhhccCChhhHHHHHhcCCCCCC
Q 005990 444 SAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDKAESYEKRLKPLPG 523 (666)
Q Consensus 444 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~l~~l~~~~~~~d~~~a~~~~~~l~~~~~ 523 (666)
+.+++.+++.. ++..+...|... |.+.|..+-.++. |..... ..|++..|.- ...+++..
T Consensus 483 el~k~n~~d~~-------~l~~lV~a~~~~-d~eka~~l~k~L~---p~~~l~--------~vdVd~LE~s-~ga~~~~~ 542 (652)
T KOG2376|consen 483 ELVKFNPNDTD-------LLVQLVTAYARL-DPEKAESLSKKLP---PLKGLK--------AVDVDALEKS-DGAKYSEA 542 (652)
T ss_pred HHHHhCCchHH-------HHHHHHHHHHhc-CHHHHHHHhhcCC---Ccccch--------hcCchHhhhc-cCcchhhh
Confidence 99998755433 666777777666 8888887666543 331100 1133322221 01111111
Q ss_pred CCCCChHHHhhccCCCcccccccccccccccCCCchhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcc
Q 005990 524 LNGVDVDSLEKTSGAKHVESASYFEVNEAHGEGKNKDKAKKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPRR 603 (666)
Q Consensus 524 ~~~~d~~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~kr~~~~~k~~~p~~~~~~pdpERwlp~~~Rs~~~~~~ 603 (666)
.-.+...+...+. +.+ ...++++|+|.|-++.|.+.+.|||+||.|..||--.++.|..-+ +-
T Consensus 543 --------~k~ta~S~~~~~~-------~~~-~kKKk~rKrkgk~pknyn~~~tPDPERWLP~reRS~yr~KrK~k~-~~ 605 (652)
T KOG2376|consen 543 --------YKKTAVSQVEEKK-------SKE-LKKKKKRKRKGKLPKNYNPKVTPDPERWLPRRERSTYRPKRKGKR-AA 605 (652)
T ss_pred --------hccccccchhhcc-------chh-hhhhcccccccCCcccCCCCCCCChhhcccchhccccCcccccch-hh
Confidence 0001011110010 001 111334567778899999999999999999999988888874433 22
Q ss_pred chhhhh
Q 005990 604 KDKRAA 609 (666)
Q Consensus 604 ~~~~~~ 609 (666)
..||.+
T Consensus 606 ~~kgtQ 611 (652)
T KOG2376|consen 606 IIKGTQ 611 (652)
T ss_pred hhcccc
Confidence 255654
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.5e-25 Score=213.29 Aligned_cols=363 Identities=14% Similarity=0.127 Sum_probs=289.9
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchh---hhHHHHHHHH
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFD---FNYLKAYCLY 96 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~a~~~~ 96 (666)
..++-.+++.++.+|+|++||++|.++++..|+.+..|..++-||...|+|++.++.-.++.+++|+ +++.++.++-
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999998999999999999999999999999999888874 6778999999
Q ss_pred HhCCHHHHHHHHHh---------------------------------------cCC----------------------Ch
Q 005990 97 RQNRLDEALESLKI---------------------------------------QEN----------------------NP 115 (666)
Q Consensus 97 ~~g~~~~A~~~l~~---------------------------------------~~~----------------------~~ 115 (666)
.+|++++|+.-+.- .|. ..
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 99999998762110 000 00
Q ss_pred hHHHHHHHHH---HH--cCCHHHHHHHHHHHHhhC---C--C--hhH--------HHHHHHHHHcCChhHHHHHHHHhhh
Q 005990 116 ATMLLKSQIL---YR--SGEMDACVEFYQKLQKSK---I--D--SLE--------INFVAGLISAGRASEVQKTLDSLRV 175 (666)
Q Consensus 116 ~~~~~la~~~---~~--~g~~~~A~~~~~~~l~~~---p--~--~~~--------~~l~~~~~~~g~~~~A~~~~~~~~~ 175 (666)
...-.+...+ +. ...|..|...+.+..... + . +.+ ...|..++-.|+.-.|...|+.++.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 0111111111 11 225667776666653321 1 1 111 2223344558999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHH
Q 005990 176 KATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTD 255 (666)
Q Consensus 176 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~ 255 (666)
++|.....+..+|.+|...++-++-...|.+|..++|+. ..+|+..|.+++.++++++|+.-|++
T Consensus 355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n---------------~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN---------------PDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC---------------CchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 999988889999999999999999999999999999653 25999999999999999999999999
Q ss_pred HHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHH
Q 005990 256 IIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQ 335 (666)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~ 335 (666)
++.++|.+.-.. ..++.+.++++++++
T Consensus 420 ai~L~pe~~~~~-----------------------------------------------------iQl~~a~Yr~~k~~~ 446 (606)
T KOG0547|consen 420 AISLDPENAYAY-----------------------------------------------------IQLCCALYRQHKIAE 446 (606)
T ss_pred HhhcChhhhHHH-----------------------------------------------------HHHHHHHHHHHHHHH
Confidence 999999764110 112667788889999
Q ss_pred HHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCC------hhHHHHHHHH-HHHHHcCChhHHHHH
Q 005990 336 ARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD------KSKIILLARA-QVAAAANHPFIAAES 408 (666)
Q Consensus 336 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~------~~~~~~~~la-~~~~~~g~~~~A~~~ 408 (666)
+...|+++...+|..+..+.+.|.++..++++++|++.|..++.+.|. +.. .+..-| .++.-.+++.+|+.+
T Consensus 447 ~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~-plV~Ka~l~~qwk~d~~~a~~L 525 (606)
T KOG0547|consen 447 SMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA-PLVHKALLVLQWKEDINQAENL 525 (606)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccch-hhhhhhHhhhchhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999887 332 222222 122345999999999
Q ss_pred HhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 005990 409 LAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLN 451 (666)
Q Consensus 409 l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~ 451 (666)
++++++++| .......|+.+..++|+.++|+++|++++.+.+.
T Consensus 526 l~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 526 LRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 999999999 5556789999999999999999999999887654
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=3.5e-24 Score=236.16 Aligned_cols=481 Identities=10% Similarity=-0.004 Sum_probs=278.3
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchh------------
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFD------------ 86 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------------ 86 (666)
.+..+|..+..+...|++++|+..|+++++.+|++..+++.++.+|+.+|++++|+..++++...+|.
T Consensus 43 ~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~ 122 (987)
T PRK09782 43 VIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIP 122 (987)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhc
Confidence 35677888888888899999999999999999999889999999999999999999999988555442
Q ss_pred ---------------------hhHHHHHH--------HHHhCCHHHHHHHHHh-cCC-Chh-HHHHHHHHHHHcCCHHHH
Q 005990 87 ---------------------FNYLKAYC--------LYRQNRLDEALESLKI-QEN-NPA-TMLLKSQILYRSGEMDAC 134 (666)
Q Consensus 87 ---------------------~~~~~a~~--------~~~~g~~~~A~~~l~~-~~~-~~~-~~~~la~~~~~~g~~~~A 134 (666)
+.+.+++. |.+.++..++++ ... .++ ++. +...++++|..+|+|++|
T Consensus 123 ~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 123 VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 22222232 222323333333 222 111 222 344447888888888888
Q ss_pred HHHHHHHHhhCCChhH--HHHHHHHHH-cCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 005990 135 VEFYQKLQKSKIDSLE--INFVAGLIS-AGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIG 211 (666)
Q Consensus 135 ~~~~~~~l~~~p~~~~--~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 211 (666)
+..+.++++..|.+.. ..++.+|.. .++ +++..++...+. .+..++..++..|+..|+.++|...+++.-...
T Consensus 202 i~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 202 DTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 8888888887777665 666667776 466 667666554222 567777888888888888888888877644332
Q ss_pred hhhccC------------C----------------------------------------CCChhh-H-------------
Q 005990 212 QETLTD------------D----------------------------------------NFAEDD-I------------- 225 (666)
Q Consensus 212 ~~~~~~------------~----------------------------------------~~~~~~-~------------- 225 (666)
+..... . +..|.+ +
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 211100 0 000000 0
Q ss_pred --------------hhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---hHHHHHHhhhhhccC---------
Q 005990 226 --------------EIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADE---SSFAVAVNNLVALKG--------- 279 (666)
Q Consensus 226 --------------~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~---~~~~~~~~~l~~~~~--------- 279 (666)
.+.......++++...+.|++++|..+|+.++....... .+...+.+.+.....
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 012235667788888999999999999999987532211 111111111111100
Q ss_pred ----------------CCChhHHHHHhHHHhhhhhh--hhh----------------hh----HHhhcCCCHHHHHHHHH
Q 005990 280 ----------------PKDVNDSLKKLDRIKEKDMQ--NFQ----------------LA----RVLDLRLSPKQREAIYA 321 (666)
Q Consensus 280 ----------------~~~~~~a~~~l~~~~~~~~~--~~~----------------~~----~~l~~~~~~~q~~~~~~ 321 (666)
..+...+...+..++...+. ... .. ..+..... .....
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd----~~~~L 513 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPD----AWQHR 513 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCc----hHHHH
Confidence 00000111111111111000 000 00 00000000 01122
Q ss_pred HHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCC
Q 005990 322 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANH 401 (666)
Q Consensus 322 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~ 401 (666)
..+.++...|++++|+..++++....|.+ ..++.+|.++...|++++|+.+|++++...|.+.. ....++......|+
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~-l~~~La~~l~~~Gr 591 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNA-LYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHH-HHHHHHHHHHhCCC
Confidence 33444556777777777777665554433 34455566666677777777777777766666432 33334444445577
Q ss_pred hhHHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHH
Q 005990 402 PFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASH 481 (666)
Q Consensus 402 ~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 481 (666)
+++|+..|+++++..|++..+..++.++.+.|++++|+..|++++...|++. .++..+|.++...|++++|+.
T Consensus 592 ~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~-------~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 592 PELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS-------NYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCCHHHHHH
Confidence 7777777777776666656666677777777777777777777766653332 256666777777777777777
Q ss_pred HHHHHHHhcCC-hHHHHHHHHhh-ccCChhhHHHHHhc
Q 005990 482 LFEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEKR 517 (666)
Q Consensus 482 ~~~~~l~~~p~-~~~l~~l~~~~-~~~d~~~a~~~~~~ 517 (666)
+|+++++.+|+ ......+..++ ...+.+.|..+.++
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777766 33333444443 44555666555443
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=4.2e-24 Score=235.56 Aligned_cols=434 Identities=13% Similarity=0.008 Sum_probs=223.2
Q ss_pred CCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHhhhccchhhhHHHHHHH
Q 005990 17 PPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIK-ADNIDDALSTIQSSQKFTFDFNYLKAYCL 95 (666)
Q Consensus 17 p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~a~~~ 95 (666)
|.+....+..+..+...++|++|+..+.++++..|.+...+..++.+|++ +++ ++++.++......++.+...++..|
T Consensus 179 ~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~y 257 (987)
T PRK09782 179 PEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATAL 257 (987)
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHH
Confidence 33444556668888889999999999999999988888888888888877 466 7777776544333455666667777
Q ss_pred HHhCCHHHHHHHHHhc-------CCChhHH-----------------------------HHHHHHHHHc-----------
Q 005990 96 YRQNRLDEALESLKIQ-------ENNPATM-----------------------------LLKSQILYRS----------- 128 (666)
Q Consensus 96 ~~~g~~~~A~~~l~~~-------~~~~~~~-----------------------------~~la~~~~~~----------- 128 (666)
...|+.++|...+... |.+...+ ..++..+...
T Consensus 258 i~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (987)
T PRK09782 258 AYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA 337 (987)
T ss_pred HHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 7777777777655541 1000000 0012222222
Q ss_pred ------------------CCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCCh---HHHHH
Q 005990 129 ------------------GEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSS---FELAY 185 (666)
Q Consensus 129 ------------------g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~ 185 (666)
+.+.+|....+.+.+..|.+.. ..++-..+..|++++|...|+.+.....+. ..+..
T Consensus 338 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 417 (987)
T PRK09782 338 TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMA 417 (987)
T ss_pred CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHH
Confidence 2223333333333333344444 334444445555555555555554422111 11222
Q ss_pred HHHHHHHHh-------------------------cCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHH
Q 005990 186 NTACSLAEM-------------------------NKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQ 240 (666)
Q Consensus 186 ~la~~~~~~-------------------------g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 240 (666)
.++.+|... |++.++...+..+....+.. |.+ ....+++.+|.++
T Consensus 418 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-------p~~---~~~~a~~~LG~~l 487 (987)
T PRK09782 418 RLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM-------SPS---YDAAAWNRLAKCY 487 (987)
T ss_pred HHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC-------CCC---CCHHHHHHHHHHH
Confidence 333333332 22222233333333322210 000 0113555555555
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHH
Q 005990 241 QLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIY 320 (666)
Q Consensus 241 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~ 320 (666)
.. |++++|+..|.+++...|.+..... ....+....++..+...+.+++... .. ....
T Consensus 488 ~~-~~~~eAi~a~~~Al~~~Pd~~~~L~----lA~al~~~Gr~eeAi~~~rka~~~~-------------p~----~~a~ 545 (987)
T PRK09782 488 RD-TLPGVALYAWLQAEQRQPDAWQHRA----VAYQAYQVEDYATALAAWQKISLHD-------------MS----NEDL 545 (987)
T ss_pred Hh-CCcHHHHHHHHHHHHhCCchHHHHH----HHHHHHHCCCHHHHHHHHHHHhccC-------------CC----cHHH
Confidence 54 5555555555555555554321000 0001111222233333332221110 00 0012
Q ss_pred HHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcC
Q 005990 321 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN 400 (666)
Q Consensus 321 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g 400 (666)
++.+.++...|++++|..++.+++...|+.......++..+...|++++|+..|++++..+|+ . .++..++.++.+.|
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~-~a~~~LA~~l~~lG 623 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-A-NAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-H-HHHHHHHHHHHHCC
Confidence 334555566666666666666666665555444444444444456666666666666666664 2 35566666666666
Q ss_pred ChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhH
Q 005990 401 HPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDA 479 (666)
Q Consensus 401 ~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 479 (666)
++++|+..|++++...| ++.++..++.++...|++++|+..|+++++..|++. .++..+|.++...|++++|
T Consensus 624 ~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~-------~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 624 NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP-------ALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCCHHHH
Confidence 66666666666666666 555666666666666666666666666666543222 2555666666666666666
Q ss_pred HHHHHHHHHhcCC
Q 005990 480 SHLFEELVKTHGS 492 (666)
Q Consensus 480 ~~~~~~~l~~~p~ 492 (666)
+..|++++..+|+
T Consensus 697 ~~~l~~Al~l~P~ 709 (987)
T PRK09782 697 QHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHhcCCC
Confidence 6666666666665
No 19
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.95 E-value=2.5e-23 Score=224.79 Aligned_cols=456 Identities=12% Similarity=0.035 Sum_probs=342.3
Q ss_pred CCCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch-hhhH--H
Q 005990 14 SQPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF-DFNY--L 90 (666)
Q Consensus 14 ~~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~ 90 (666)
...|..+...+..+...++.|+++.|+..|+++++.+|++..+...++.++...|++++|+.+++++....+ .... .
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~lla 107 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLAS 107 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence 456778889999999999999999999999999999999965555888899999999999999999963322 2223 3
Q ss_pred HHHHHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-HHHHHHHHHcCChhH
Q 005990 91 KAYCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-INFVAGLISAGRASE 165 (666)
Q Consensus 91 ~a~~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~l~~~~~~~g~~~~ 165 (666)
.|.++...|++++|++++++ .|+++.++..++.++...++.++|+..+++++..+|+... ..++.++...++..+
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHH
Confidence 46688889999999999987 6788999999999999999999999999999999998665 444444444677767
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhH---hhhhhhHHHHHHHHHH-
Q 005990 166 VQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDI---EIELAPIAVQLAYVQQ- 241 (666)
Q Consensus 166 A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~- 241 (666)
|+..+++++..+|++.++++.+..++...|-...|+++..+--.+.. +.+. +.+.+.-.+..+....
T Consensus 188 AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~---------~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 188 ALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVS---------AEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccC---------HHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999887766433221 2221 0001111111111111
Q ss_pred -HcCC---hHHHHHHHHHHHhh---CCCCHhH-HHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCH
Q 005990 242 -LLGN---TQEAFGAYTDIIKR---NLADESS-FAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSP 313 (666)
Q Consensus 242 -~~g~---~~eA~~~~~~~l~~---~~~~~~~-~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~ 313 (666)
...+ .+.|+..++.++.. .|..... .......++.+.......++++.++.+.... ..+..
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~-----------~~~P~ 327 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG-----------YKMPD 327 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC-----------CCCCH
Confidence 1122 35577777777763 3433222 3333455555555555556666665542211 11111
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCC------CchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCC----
Q 005990 314 KQREAIYANRVLLLLHANKMDQARELVAALPDMFPD------SVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD---- 383 (666)
Q Consensus 314 ~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~---- 383 (666)
. +....+..|+..++.++|+.++.++....|. +......+..++...+++++|..+++++....|-
T Consensus 328 y----~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~ 403 (822)
T PRK14574 328 Y----ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGV 403 (822)
T ss_pred H----HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEec
Confidence 1 2334488899999999999999999775432 2222345566788999999999999999885551
Q ss_pred ----------hhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 005990 384 ----------KSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNA 452 (666)
Q Consensus 384 ----------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~ 452 (666)
+-..+...+++++.-.|++.+|++.++.++...| +++++..++.++...|.+..|...++.+....|.+
T Consensus 404 ~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 404 YGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence 1134777889999999999999999999999999 99999999999999999999999998887765433
Q ss_pred ccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCChHHHHHHH
Q 005990 453 MTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLV 500 (666)
Q Consensus 453 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~l~~l~ 500 (666)
..+....|..++..|++.+|..+...++...|++.....|-
T Consensus 484 -------~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~ 524 (822)
T PRK14574 484 -------LILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELD 524 (822)
T ss_pred -------HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHH
Confidence 23677889999999999999999999999999955544433
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=6.7e-24 Score=234.47 Aligned_cols=402 Identities=11% Similarity=-0.028 Sum_probs=286.6
Q ss_pred hhhhHHHHHHHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHH
Q 005990 85 FDFNYLKAYCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLI 158 (666)
Q Consensus 85 ~~~~~~~a~~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~ 158 (666)
+........+....|++++|++++.. .+....++..+|.++...|++++|+.+|++++...|++.. ..++.++.
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33344444455555555555555544 2335567889999999999999999999999999888877 88888888
Q ss_pred HcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHH
Q 005990 159 SAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAY 238 (666)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 238 (666)
..|++++|+..+++++...|++.. ++.+|.++...|++++|+..|++++.+.|.. ..++..++.
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~---------------~~~~~~la~ 158 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT---------------QQYPTEYVQ 158 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Confidence 899999999999999999999998 9999999999999999999999999988542 246777888
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHhHHH-HHHh---hhhhccCC---CCh---hHHHHHhHHHhhhhhhhhhhhHHhh
Q 005990 239 VQQLLGNTQEAFGAYTDIIKRNLADESSFA-VAVN---NLVALKGP---KDV---NDSLKKLDRIKEKDMQNFQLARVLD 308 (666)
Q Consensus 239 ~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~-~~~~---~l~~~~~~---~~~---~~a~~~l~~~~~~~~~~~~~~~~l~ 308 (666)
++...|..++|+..++++.. .|....... .... .+...... ..+ ..++..++.++...+..+
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p------- 230 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNP------- 230 (765)
T ss_pred HHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCC-------
Confidence 88888999999998887765 443211000 0000 00000000 011 234444444432210000
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCc-hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCCh---
Q 005990 309 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV-MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK--- 384 (666)
Q Consensus 309 ~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~--- 384 (666)
. ...............++..|++++|+..|+.++...+..+ .+...++.++...|++++|+.+|++++...|.+
T Consensus 231 -~-~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 231 -D-ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred -c-cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 0 0001111222223344677999999999999998865433 344446889999999999999999999887764
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-------------C---hhHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 005990 385 SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-------------M---PATVATLVALKERAGDIDGAAAVLDSAIKW 448 (666)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-------------~---~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~ 448 (666)
.......++.++...|++++|+.+++++.+..| + ......++.++...|++++|+..|++++..
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 123566677788999999999999999887654 1 234578899999999999999999999988
Q ss_pred HHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCChHH-HHH-HHHhhccCChhhHHHHHhcCC
Q 005990 449 WLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEA-LVG-LVTTSAHVDVDKAESYEKRLK 519 (666)
Q Consensus 449 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-l~~-l~~~~~~~d~~~a~~~~~~l~ 519 (666)
.|.+. .++..+|.++...|++++|+..|++++..+|++.. ... ...+....+++.|+.+...+.
T Consensus 389 ~P~n~-------~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 389 APGNQ-------GLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 65443 38889999999999999999999999999999432 222 234446778888888766543
No 21
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.94 E-value=7.2e-23 Score=225.86 Aligned_cols=450 Identities=12% Similarity=0.066 Sum_probs=343.1
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc----chhhhHHHHHHH
Q 005990 22 DLFTSLNRHIERSEFEQAVKVADQVLSTNP--SDEDAMRCKVVALIKADNIDDALSTIQSSQKF----TFDFNYLKAYCL 95 (666)
Q Consensus 22 ~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~a~~~ 95 (666)
.+...+..+...|++++|+.+|+.+....+ -+..++..+..++.+.++++.|..++..+... +...+..+..+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 456667778889999999999999876542 36788999999999999999999999988432 334556788999
Q ss_pred HHhCCHHHHHHHHHhcCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CChhH-HHHHHHHHHcCChhHHHHHHH
Q 005990 96 YRQNRLDEALESLKIQEN-NPATMLLKSQILYRSGEMDACVEFYQKLQKSK--IDSLE-INFVAGLISAGRASEVQKTLD 171 (666)
Q Consensus 96 ~~~g~~~~A~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~-~~l~~~~~~~g~~~~A~~~~~ 171 (666)
.+.|++++|.++|+..+. +...|..+...|.+.|++++|+.+|++++... |+... ..+..++...|....+..++.
T Consensus 169 ~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 999999999999999765 78899999999999999999999999998754 33333 666677788899999988887
Q ss_pred HhhhcC-CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHH
Q 005990 172 SLRVKA-TSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAF 250 (666)
Q Consensus 172 ~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~ 250 (666)
.+.+.. ..+..++..+...|...|++++|..+|+.+...+ ..+|..+...|.+.|++++|+
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~------------------~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT------------------TVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCC------------------hhHHHHHHHHHHhCCCHHHHH
Confidence 776543 2344577788999999999999999998763211 148899999999999999999
Q ss_pred HHHHHHHhhCC-CCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHH
Q 005990 251 GAYTDIIKRNL-ADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLH 329 (666)
Q Consensus 251 ~~~~~~l~~~~-~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~ 329 (666)
.+|+++..... .|..++..+...+.. ...+..+...+..+++.+. .....++..+...|..
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~---~g~~~~a~~i~~~m~~~g~---------------~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSR---LALLEHAKQAHAGLIRTGF---------------PLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh---ccchHHHHHHHHHHHHhCC---------------CCCeeehHHHHHHHHH
Confidence 99999876432 233333222222222 2233344444444433210 0111233455788999
Q ss_pred cCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHH
Q 005990 330 ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESL 409 (666)
Q Consensus 330 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l 409 (666)
.|++++|.++|+++.. .+...|..+...|.+.|+.++|+.+|+++...........+..+...+...|..++|.++|
T Consensus 373 ~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 373 WGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred CCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 9999999999999875 2556788888999999999999999999987543322336777888899999999999999
Q ss_pred hcCcCC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHH
Q 005990 410 AKIPDI---QHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEEL 486 (666)
Q Consensus 410 ~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 486 (666)
+.+.+. .|+...+..++.+|.+.|++++|.++++++- ..++ ..+|..+...+...|+.+.|..+++++
T Consensus 450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~------~~p~---~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP------FKPT---VNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC------CCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 998753 3455678999999999999999999987641 1112 236888889999999999999999999
Q ss_pred HHhcCC-hHHHHHHHHhh-ccCChhhHHHHHhcCC
Q 005990 487 VKTHGS-IEALVGLVTTS-AHVDVDKAESYEKRLK 519 (666)
Q Consensus 487 l~~~p~-~~~l~~l~~~~-~~~d~~~a~~~~~~l~ 519 (666)
+...|+ ......++..| ....+++|.++.+.+.
T Consensus 521 ~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 521 YGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred hCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999997 34555666666 4677788888866544
No 22
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.93 E-value=2.1e-21 Score=215.74 Aligned_cols=466 Identities=14% Similarity=0.101 Sum_probs=346.1
Q ss_pred CcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHH
Q 005990 18 PPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNP--SDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCL 95 (666)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~ 95 (666)
.++..++.....+.+.|++++|+.+|+.+...+. .+...+..+..++.+.|.+++|+.++..+...+...+..+..++
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4566677777888899999999999999988753 33444556667788999999999999998664445555777888
Q ss_pred HHhCCHHHHHHHHHhc-----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CChhH-HHHHHHHHHcCChhHHH
Q 005990 96 YRQNRLDEALESLKIQ-----ENNPATMLLKSQILYRSGEMDACVEFYQKLQKSK--IDSLE-INFVAGLISAGRASEVQ 167 (666)
Q Consensus 96 ~~~g~~~~A~~~l~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~-~~l~~~~~~~g~~~~A~ 167 (666)
.+.|++++|..++... ..+..++..+...|.+.|++++|..+|+++...+ |+... ..+...|.+.|++++|+
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 9999999999999873 2378899999999999999999999999998753 55444 77888999999999999
Q ss_pred HHHHHhhhc--CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCC
Q 005990 168 KTLDSLRVK--ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGN 245 (666)
Q Consensus 168 ~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 245 (666)
.+|+.+... .|+ ...|..+...|...|++++|.++|..+..... ++.|+. .++..+...|.+.|+
T Consensus 528 ~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~------gi~PD~------vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 528 GAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETH------PIDPDH------ITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC------CCCCcH------HHHHHHHHHHHHCCC
Confidence 999998664 354 55888999999999999999999999976421 111333 388889999999999
Q ss_pred hHHHHHHHHHHHhhCC-CCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHH
Q 005990 246 TQEAFGAYTDIIKRNL-ADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRV 324 (666)
Q Consensus 246 ~~eA~~~~~~~l~~~~-~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a 324 (666)
+++|.++|+.+.+.+. .+...+..+...+ ....++.++...++++...+ .. .....+..+.
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay---~k~G~~deAl~lf~eM~~~G-------------v~--PD~~TynsLI 656 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSC---SQKGDWDFALSIYDDMKKKG-------------VK--PDEVFFSALV 656 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHH---HhcCCHHHHHHHHHHHHHcC-------------CC--CCHHHHHHHH
Confidence 9999999999988763 2333332222222 22344557777776664431 11 1122344556
Q ss_pred HHHHHcCChHHHHHHHHhccccC-CCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChh
Q 005990 325 LLLLHANKMDQARELVAALPDMF-PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPF 403 (666)
Q Consensus 325 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~ 403 (666)
..+...|++++|.+++..+.+.. +-+...+..+...|.+.|++++|+.+|+.+...........|..+...|.+.|+++
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e 736 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 77899999999999999998764 34567788888999999999999999999876432222447899999999999999
Q ss_pred HHHHHHhcCcCC--CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHH-HHH---------
Q 005990 404 IAAESLAKIPDI--QHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS-FKL--------- 471 (666)
Q Consensus 404 ~A~~~l~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~-~~~--------- 471 (666)
+|+++|+.+... .|+...+..+...|.+.|++++|..+|..+.+.. ..++......+..+.. .+.
T Consensus 737 eAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G---i~pd~~tynsLIglc~~~y~ka~~l~~~v 813 (1060)
T PLN03218 737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG---IKPNLVMCRCITGLCLRRFEKACALGEPV 813 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999988654 4577778889999999999999999999987642 2222221111111100 000
Q ss_pred ---h-------CCChhhHHHHHHHHHHhc--CChHHHHHHHHhhc-cCChhhHHHHHhc
Q 005990 472 ---R-------HGREEDASHLFEELVKTH--GSIEALVGLVTTSA-HVDVDKAESYEKR 517 (666)
Q Consensus 472 ---~-------~g~~~~A~~~~~~~l~~~--p~~~~l~~l~~~~~-~~d~~~a~~~~~~ 517 (666)
. .+..+.|..+|+++++.. |+..++..++.++. ..+...+..+...
T Consensus 814 ~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~ 872 (1060)
T PLN03218 814 VSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIEN 872 (1060)
T ss_pred hhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 1 123467999999999876 88777777776653 3344556555543
No 23
>PLN03077 Protein ECB2; Provisional
Probab=99.93 E-value=7.4e-22 Score=223.25 Aligned_cols=443 Identities=12% Similarity=0.059 Sum_probs=298.2
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc------------------
Q 005990 22 DLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKF------------------ 83 (666)
Q Consensus 22 ~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~------------------ 83 (666)
.+-..+..+.+.|++++|..+|+++.. .|...|..+...|.+.|++++|+.+|.++...
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Confidence 344455566666777777777766532 24456666677777777777777777666221
Q ss_pred ---------------------chhhhHHHHHHHHHhCCHHHHHHHHHhcCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005990 84 ---------------------TFDFNYLKAYCLYRQNRLDEALESLKIQEN-NPATMLLKSQILYRSGEMDACVEFYQKL 141 (666)
Q Consensus 84 ---------------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 141 (666)
+...+..+...|.+.|++++|.++|+..+. +...|..+...|.+.|++++|+++|+++
T Consensus 301 ~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 122334555667778888888888877543 6677788888888888888888888877
Q ss_pred Hhh--CCChhH-HHHHHHHHHcCChhHHHHHHHHhhhcCC-ChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccC
Q 005990 142 QKS--KIDSLE-INFVAGLISAGRASEVQKTLDSLRVKAT-SSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTD 217 (666)
Q Consensus 142 l~~--~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~ 217 (666)
... .|+... ..+..++...|++++|.+++..+..... .+..++..+...|...|++++|.++|+++.+.+
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d------ 454 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD------ 454 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC------
Confidence 553 355544 5555667778888888888877766542 244466677778888888888888887653211
Q ss_pred CCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhh
Q 005990 218 DNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKD 297 (666)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~ 297 (666)
. ..|..+...|...|++++|+.+|+++......|...+..+...+... .+...+......++..+
T Consensus 455 ------~------vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~---g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 455 ------V------ISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARI---GALMCGKEIHAHVLRTG 519 (857)
T ss_pred ------e------eeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhh---chHHHhHHHHHHHHHhC
Confidence 1 36777778888888888888888887754333333332222222111 11112222222221111
Q ss_pred hhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHH
Q 005990 298 MQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQF 377 (666)
Q Consensus 298 ~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 377 (666)
+. ....+...+...|...|++++|...|+.+ +.+...|..+...|.+.|+.++|+.+|+++
T Consensus 520 -------------~~--~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 520 -------------IG--FDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred -------------CC--ccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 00 01112234467789999999999999887 446678888888999999999999999998
Q ss_pred HhhC--CChhHHHHHHHHHHHHHcCChhHHHHHHhcCcC---CCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 005990 378 AEKL--PDKSKIILLARAQVAAAANHPFIAAESLAKIPD---IQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNA 452 (666)
Q Consensus 378 ~~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~ 452 (666)
.+.. |+ ...+..+...+.+.|.+++|..+|+.+.+ +.|+...+..++.+|.+.|++++|.++++++-
T Consensus 581 ~~~g~~Pd--~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~------ 652 (857)
T PLN03077 581 VESGVNPD--EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP------ 652 (857)
T ss_pred HHcCCCCC--cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC------
Confidence 8754 55 23566667789999999999999999873 34566778999999999999999999998751
Q ss_pred ccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCChH-HHHHHHHhh-ccCChhhHHHHHhcC
Q 005990 453 MTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIE-ALVGLVTTS-AHVDVDKAESYEKRL 518 (666)
Q Consensus 453 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-~l~~l~~~~-~~~d~~~a~~~~~~l 518 (666)
..++. .+|..+...+...|+.+.|....+++++.+|++. ....+...| ....++++..+.+.+
T Consensus 653 ~~pd~---~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 653 ITPDP---AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 12222 3677777788889999999999999999999833 233344444 456777777765543
No 24
>PLN03077 Protein ECB2; Provisional
Probab=99.92 E-value=1.3e-21 Score=221.17 Aligned_cols=215 Identities=11% Similarity=0.028 Sum_probs=151.9
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--------------------
Q 005990 24 FTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKF-------------------- 83 (666)
Q Consensus 24 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~-------------------- 83 (666)
-..+..+.+.|+.+.|..+|+++.. .|..+|..+...|.+.|++++|+.+|.++...
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMPE---RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCCC---CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 3445556778888888888877643 35667888888888888888888888876311
Q ss_pred -------------------chhhhHHHHHHHHHhCCHHHHHHHHHhcCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005990 84 -------------------TFDFNYLKAYCLYRQNRLDEALESLKIQEN-NPATMLLKSQILYRSGEMDACVEFYQKLQK 143 (666)
Q Consensus 84 -------------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 143 (666)
+...+..+..+|.+.|++++|..+|+..+. +...|..+...|.+.|++++|+.+|.++..
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 112234566788899999999999998665 778899999999999999999999999876
Q ss_pred h--CCChhH-HHHHHHHHHcCChhHHHHHHHHhhhcC-CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCC
Q 005990 144 S--KIDSLE-INFVAGLISAGRASEVQKTLDSLRVKA-TSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDN 219 (666)
Q Consensus 144 ~--~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~ 219 (666)
. .|+... ..+..++...|+.+.|.+++..+.... ..+..++..+...|...|++++|..+|+++...+
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d-------- 353 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD-------- 353 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--------
Confidence 4 466555 555556666777777777776665532 2234466677777777777777777777653211
Q ss_pred CChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005990 220 FAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 220 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~ 259 (666)
. ..|..+...|.+.|++++|+++|+++...
T Consensus 354 ----~------~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 354 ----A------VSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred ----e------eeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 1 36667777777777777777777766543
No 25
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.92 E-value=6.1e-21 Score=212.16 Aligned_cols=425 Identities=12% Similarity=0.093 Sum_probs=321.4
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch---h--hhHHHHHHHHHhCCHHHHHHHHH
Q 005990 35 EFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF---D--FNYLKAYCLYRQNRLDEALESLK 109 (666)
Q Consensus 35 ~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~--~~~~~a~~~~~~g~~~~A~~~l~ 109 (666)
+...++.+.+..+...++ ...+..+...+.+.|++++|+.+|+.+...+. . .+......+.+.|.+++|+.++.
T Consensus 352 ~~~~~~~~~~~~~~~~~~-~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~ 430 (1060)
T PLN03218 352 EEENSLAAYNGGVSGKRK-SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAK 430 (1060)
T ss_pred hhhhhHHHhccccCCCCC-chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 334555566665555443 44555555677799999999999999955432 1 11233445677899999999998
Q ss_pred hcCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CChhH-HHHHHHHHHcCChhHHHHHHHHhhhcCC-ChHHHH
Q 005990 110 IQEN-NPATMLLKSQILYRSGEMDACVEFYQKLQKSK--IDSLE-INFVAGLISAGRASEVQKTLDSLRVKAT-SSFELA 184 (666)
Q Consensus 110 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 184 (666)
..+. +...+..+...|.+.|++++|..+|+.+.+.. |+... ..+...|...|++++|..+|+.+..... .+...|
T Consensus 431 ~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTy 510 (1060)
T PLN03218 431 LIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF 510 (1060)
T ss_pred HcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 8655 77888999999999999999999999998754 45444 7788899999999999999999987543 256689
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh----C
Q 005990 185 YNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR----N 260 (666)
Q Consensus 185 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~----~ 260 (666)
..+...|.+.|++++|+.+|..+...... |+. .+|..+...|.+.|++++|.++|..+... .
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~--------PD~------vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~ 576 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVK--------PDR------VVFNALISACGQSGAVDRAFDVLAEMKAETHPID 576 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCC--------CCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999776532 443 38999999999999999999999999763 3
Q ss_pred CCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 005990 261 LADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELV 340 (666)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~ 340 (666)
|+ ...+..+... +....++..+.+.++.+.+.+. . .....+..+...|...|++++|..+|
T Consensus 577 PD-~vTynaLI~a---y~k~G~ldeA~elf~~M~e~gi-----------~----p~~~tynsLI~ay~k~G~~deAl~lf 637 (1060)
T PLN03218 577 PD-HITVGALMKA---CANAGQVDRAKEVYQMIHEYNI-----------K----GTPEVYTIAVNSCSQKGDWDFALSIY 637 (1060)
T ss_pred Cc-HHHHHHHHHH---HHHCCCHHHHHHHHHHHHHcCC-----------C----CChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 43 2222222222 2233455577777766644321 1 11223445577899999999999999
Q ss_pred Hhcccc--CCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcC--CC
Q 005990 341 AALPDM--FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD--IQ 416 (666)
Q Consensus 341 ~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~ 416 (666)
..+... .|+ ...+..+...+.+.|++++|..++..+.+.........+..+...|.+.|++++|..+|+.+.+ ..
T Consensus 638 ~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 638 DDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999876 343 4667777889999999999999999999865433345888999999999999999999999865 45
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhc--CChH
Q 005990 417 HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH--GSIE 494 (666)
Q Consensus 417 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~ 494 (666)
|+...|..++..|.+.|++++|.++|+++.... ..++. ..+..+...+.+.|++++|..+|.++.+.. |+..
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G---i~Pd~---~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ 790 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLG---LCPNT---ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV 790 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 677789999999999999999999999986431 22222 245566788999999999999999999865 6644
Q ss_pred HHHHHH
Q 005990 495 ALVGLV 500 (666)
Q Consensus 495 ~l~~l~ 500 (666)
....++
T Consensus 791 tynsLI 796 (1060)
T PLN03218 791 MCRCIT 796 (1060)
T ss_pred HHHHHH
Confidence 444444
No 26
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.92 E-value=1.8e-21 Score=214.71 Aligned_cols=421 Identities=13% Similarity=0.051 Sum_probs=330.8
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhC
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTN-PSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQN 99 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g 99 (666)
..+-..+..+...++++.|..++..+.... ..+..++..+..+|.+.|++++|..+|+++...+...+..+...|.+.|
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG 203 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCc
Confidence 344444555677788999999999887753 2367889999999999999999999999997766667788899999999
Q ss_pred CHHHHHHHHHhc-----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CChhH-HHHHHHHHHcCChhHHHHHHH
Q 005990 100 RLDEALESLKIQ-----ENNPATMLLKSQILYRSGEMDACVEFYQKLQKSK--IDSLE-INFVAGLISAGRASEVQKTLD 171 (666)
Q Consensus 100 ~~~~A~~~l~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~-~~l~~~~~~~g~~~~A~~~~~ 171 (666)
++++|+++|++. ..+...+..+...+...|....+.+++..+++.. ++... ..+...|.+.|++++|..+|+
T Consensus 204 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 283 (697)
T PLN03081 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999883 2256777888888999999999999998887754 33222 778899999999999999999
Q ss_pred HhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHH
Q 005990 172 SLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFG 251 (666)
Q Consensus 172 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~ 251 (666)
.+.. .+...|..+...|...|++++|+.+|+++...... |+. ..+..+..++...|++++|.+
T Consensus 284 ~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~--------pd~------~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 284 GMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS--------IDQ------FTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred hCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--------CCH------HHHHHHHHHHHhccchHHHHH
Confidence 8753 45678999999999999999999999999765422 444 388899999999999999999
Q ss_pred HHHHHHhhCC-CCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHc
Q 005990 252 AYTDIIKRNL-ADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHA 330 (666)
Q Consensus 252 ~~~~~l~~~~-~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~ 330 (666)
++..+++... .+..+...+. ..++ ...++.++.+.|+++.+. ....+..++..|...
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li-~~y~--k~G~~~~A~~vf~~m~~~-------------------d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALV-DLYS--KWGRMEDARNVFDRMPRK-------------------NLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHH-HHHH--HCCCHHHHHHHHHhCCCC-------------------CeeeHHHHHHHHHHc
Confidence 9999998763 3322222222 2222 233455777777655321 112344557779999
Q ss_pred CChHHHHHHHHhccccCC-CCchHHHHHHHHHHhhCChhHHHHHHHHHHhhC---CChhHHHHHHHHHHHHHcCChhHHH
Q 005990 331 NKMDQARELVAALPDMFP-DSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL---PDKSKIILLARAQVAAAANHPFIAA 406 (666)
Q Consensus 331 ~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~~~~la~~~~~~g~~~~A~ 406 (666)
|+.++|.++|+++..... -+...+..+...+...|..++|..+|+.+.+.. |+ ...+..++.++.+.|++++|.
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~--~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR--AMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--ccchHhHHHHHHhcCCHHHHH
Confidence 999999999999876532 234556666678899999999999999998643 43 337888999999999999999
Q ss_pred HHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHH
Q 005990 407 ESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEEL 486 (666)
Q Consensus 407 ~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 486 (666)
++++++. ..|+..+|..+...+...|+++.|...+++++...|.+.. .+..++.+|...|++++|.++++.+
T Consensus 483 ~~~~~~~-~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~-------~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 483 AMIRRAP-FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN-------NYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred HHHHHCC-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc-------chHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999863 4567778999999999999999999999998766543322 4567789999999999999999999
Q ss_pred HHhc
Q 005990 487 VKTH 490 (666)
Q Consensus 487 l~~~ 490 (666)
.+..
T Consensus 555 ~~~g 558 (697)
T PLN03081 555 KRKG 558 (697)
T ss_pred HHcC
Confidence 8764
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=4.5e-22 Score=205.59 Aligned_cols=304 Identities=15% Similarity=0.130 Sum_probs=251.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCC----hHHHHHHH
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATS----SFELAYNT 187 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l 187 (666)
.....+.+|..+...|++++|+..|++++..+|++.. ..++.++...|++++|+..++.++...+. ...+++.+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4456677788999999999999999999999998876 78888999999999999999988875432 23578899
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHH
Q 005990 188 ACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSF 267 (666)
Q Consensus 188 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~ 267 (666)
|.+|...|++++|+.+|+++++..+. . ..++..++.++...|++++|++.|+.++...|.+...
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~----------~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 177 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDF----------A-----EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV- 177 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcc----------h-----HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-
Confidence 99999999999999999999887532 1 2588899999999999999999999998876644210
Q ss_pred HHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccC
Q 005990 268 AVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF 347 (666)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 347 (666)
.....+.+++.++...|++++|+..+++++...
T Consensus 178 -----------------------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 210 (389)
T PRK11788 178 -----------------------------------------------EIAHFYCELAQQALARGDLDAARALLKKALAAD 210 (389)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC
Confidence 000112345778899999999999999999999
Q ss_pred CCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCCChhHHHHHHH
Q 005990 348 PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVA 427 (666)
Q Consensus 348 p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~~ 427 (666)
|++...++.++.++...|++++|+.+|++++...|.+...++..++.+|...|++++|+..++++++..|+......++.
T Consensus 211 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~ 290 (389)
T PRK11788 211 PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQ 290 (389)
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99989999999999999999999999999999988865557788999999999999999999999998886666688999
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHh---CCChhhHHHHHHHHHH
Q 005990 428 LKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR---HGREEDASHLFEELVK 488 (666)
Q Consensus 428 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~l~ 488 (666)
++...|++++|..+|+++++..|+.. .+. .+...++. .|+..+|+..|+++++
T Consensus 291 ~~~~~g~~~~A~~~l~~~l~~~P~~~-------~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 291 LLEEQEGPEAAQALLREQLRRHPSLR-------GFH-RLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCcCHH-------HHH-HHHHHhhhccCCccchhHHHHHHHHHH
Confidence 99999999999999999998864332 132 22333332 5689999999998885
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=2.5e-21 Score=198.35 Aligned_cols=408 Identities=15% Similarity=0.090 Sum_probs=298.9
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYC 94 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~ 94 (666)
+-+..+.+++..|+.++..|++++|..+|.+++..+|.+..+|+.+|.+|-++|+.++|+..+-.+..+
T Consensus 134 ~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL----------- 202 (895)
T KOG2076|consen 134 KLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL----------- 202 (895)
T ss_pred ccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-----------
Confidence 334458999999999999999999999999999999999999999999999999999999988877554
Q ss_pred HHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHH
Q 005990 95 LYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDS 172 (666)
Q Consensus 95 ~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~ 172 (666)
.|.+...|..++.....+|++.+|.-+|.++|+.+|.+.. ...+.+|.++|+...|...|.+
T Consensus 203 ----------------~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~ 266 (895)
T KOG2076|consen 203 ----------------NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQ 266 (895)
T ss_pred ----------------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 4567899999999999999999999999999999999988 7888888999999999999999
Q ss_pred hhhcCCC-h----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChH
Q 005990 173 LRVKATS-S----FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQ 247 (666)
Q Consensus 173 ~~~~~~~-~----~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 247 (666)
++...|. + .+..+..+..+...++-+.|++.++.++..+.... +. +-+..++.++.....++
T Consensus 267 l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~-----~~--------ed~ni~ael~l~~~q~d 333 (895)
T KOG2076|consen 267 LLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEA-----SL--------EDLNILAELFLKNKQSD 333 (895)
T ss_pred HHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccc-----cc--------cHHHHHHHHHHHhHHHH
Confidence 9998872 2 23445567778888888999999999998543211 11 24457788888888888
Q ss_pred HHHHHHHHHHhh--CCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHH
Q 005990 248 EAFGAYTDIIKR--NLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVL 325 (666)
Q Consensus 248 eA~~~~~~~l~~--~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~ 325 (666)
.|.......... .+++. .+..-..+-... ++ +.. ....+...+. .+....+.
T Consensus 334 ~~~~~i~~~~~r~~e~d~~-e~~~~~~~~~~~----~~---------~~~-------~~~~~s~~l~-----v~rl~icL 387 (895)
T KOG2076|consen 334 KALMKIVDDRNRESEKDDS-EWDTDERRREEP----NA---------LCE-------VGKELSYDLR-----VIRLMICL 387 (895)
T ss_pred HhhHHHHHHhccccCCChh-hhhhhhhccccc----cc---------ccc-------CCCCCCccch-----hHhHhhhh
Confidence 888777655431 12221 111100000000 00 000 0000000111 13344466
Q ss_pred HHHHcCChHHHHHHHHhccccCCC-CchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhH
Q 005990 326 LLLHANKMDQARELVAALPDMFPD-SVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFI 404 (666)
Q Consensus 326 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~ 404 (666)
+.+..+...+++..+..-....|. +...++..+.++...|++.+|+.+|..+....+.....+|+.+|.||...|.+++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 666666666666555433332343 5578888999999999999999999998887776556689999999999999999
Q ss_pred HHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh--ccCcchHHHHHHHHHHHHHhCCChhhHHH
Q 005990 405 AAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNA--MTEDNKLSVIMQEAASFKLRHGREEDASH 481 (666)
Q Consensus 405 A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 481 (666)
|++.|++++...| +..+...|+.+|.++|+.++|.+.++....-.+.+ ......-..++.+...++...|+.++=+.
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999 77888899999999999999999888754211000 00111222355677888999999988666
Q ss_pred HHHHHHH
Q 005990 482 LFEELVK 488 (666)
Q Consensus 482 ~~~~~l~ 488 (666)
.-..++.
T Consensus 548 t~~~Lv~ 554 (895)
T KOG2076|consen 548 TASTLVD 554 (895)
T ss_pred HHHHHHH
Confidence 6655554
No 29
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=7.5e-22 Score=203.96 Aligned_cols=302 Identities=12% Similarity=0.052 Sum_probs=167.4
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHh
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQ 98 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~ 98 (666)
.....|..+..+...|++++|+..|.++++.+|++..++..++.++...|++++|+..++.+.........
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--------- 104 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE--------- 104 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH---------
Confidence 34566777888899999999999999999999999999999999999999999999999987543210000
Q ss_pred CCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhc
Q 005990 99 NRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVK 176 (666)
Q Consensus 99 g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 176 (666)
....++..+|.+|...|++++|+.+|++++...|.+.. ..++.++...|++++|+..++.++..
T Consensus 105 --------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (389)
T PRK11788 105 --------------QRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL 170 (389)
T ss_pred --------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence 00123344444555555555555555554444433332 44444444455555555555544443
Q ss_pred CCCh-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHH
Q 005990 177 ATSS-----FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFG 251 (666)
Q Consensus 177 ~~~~-----~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~ 251 (666)
.|.+ ...+..+|.++...|++++|+.+|+++++..+. ...+++.+|.++...|++++|+.
T Consensus 171 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~ 235 (389)
T PRK11788 171 GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ---------------CVRASILLGDLALAQGDYAAAIE 235 (389)
T ss_pred cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC---------------CHHHHHHHHHHHHHCCCHHHHHH
Confidence 3332 113344555555555555555555555555422 11345555555555555555555
Q ss_pred HHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcC
Q 005990 252 AYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHAN 331 (666)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~ 331 (666)
+|++++..+|.+.. ... ..++.++...|
T Consensus 236 ~~~~~~~~~p~~~~-------------------~~~---------------------------------~~l~~~~~~~g 263 (389)
T PRK11788 236 ALERVEEQDPEYLS-------------------EVL---------------------------------PKLMECYQALG 263 (389)
T ss_pred HHHHHHHHChhhHH-------------------HHH---------------------------------HHHHHHHHHcC
Confidence 55555554442210 000 11134445555
Q ss_pred ChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHH---cCChhHHHHH
Q 005990 332 KMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA---ANHPFIAAES 408 (666)
Q Consensus 332 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~---~g~~~~A~~~ 408 (666)
++++|...++.+....|+... +..++.++...|++++|+..|++++..+|++.. +...+. .++. .|+..+|+.+
T Consensus 264 ~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~-~~~~~~~~g~~~~a~~~ 340 (389)
T PRK11788 264 DEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLD-YHLAEAEEGRAKESLLL 340 (389)
T ss_pred CHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHH-HhhhccCCccchhHHHH
Confidence 555555555555555554432 245555555566666666666666555555332 222222 2221 3355555555
Q ss_pred HhcCc
Q 005990 409 LAKIP 413 (666)
Q Consensus 409 l~~~~ 413 (666)
+++++
T Consensus 341 ~~~~~ 345 (389)
T PRK11788 341 LRDLV 345 (389)
T ss_pred HHHHH
Confidence 55544
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=5.7e-23 Score=204.15 Aligned_cols=292 Identities=12% Similarity=0.075 Sum_probs=250.8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhh---HHHHHHHHHhCC
Q 005990 24 FTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFN---YLKAYCLYRQNR 100 (666)
Q Consensus 24 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~a~~~~~~g~ 100 (666)
+..+.....+-++.+|+..|.+.-...++...++..+|.+|+.+++|++|..+|+.+....|... -...-+++.+.+
T Consensus 323 ~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~ 402 (638)
T KOG1126|consen 323 LGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD 402 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh
Confidence 45555667777889999999997788888889999999999999999999999999965544211 122334444443
Q ss_pred HH----HHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhh
Q 005990 101 LD----EALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLR 174 (666)
Q Consensus 101 ~~----~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 174 (666)
-- -|.++++..|..+..|-.+|.+|-.+++++.|+.+|++++..+|...- +.+|.-+.....+|.|..+|+.++
T Consensus 403 ~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 403 EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 21 255667778999999999999999999999999999999999996544 777888888999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHH
Q 005990 175 VKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYT 254 (666)
Q Consensus 175 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~ 254 (666)
..+|.++.+||.+|.+|..+++++.|+-.|++|++++|.+. .+...+|.++.+.|+.++|+.+|+
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns---------------vi~~~~g~~~~~~k~~d~AL~~~~ 547 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS---------------VILCHIGRIQHQLKRKDKALQLYE 547 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch---------------hHHhhhhHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999996532 588899999999999999999999
Q ss_pred HHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChH
Q 005990 255 DIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMD 334 (666)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~ 334 (666)
+++.++|.++.. .+..+.+++..++++
T Consensus 548 ~A~~ld~kn~l~-----------------------------------------------------~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 548 KAIHLDPKNPLC-----------------------------------------------------KYHRASILFSLGRYV 574 (638)
T ss_pred HHHhcCCCCchh-----------------------------------------------------HHHHHHHHHhhcchH
Confidence 999999977511 134478888999999
Q ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCC
Q 005990 335 QARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD 383 (666)
Q Consensus 335 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~ 383 (666)
+|...++++...-|++..+++++|.+|.+.|+.+.|+..|.-+...+|.
T Consensus 575 eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 575 EALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999887
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.91 E-value=5.7e-22 Score=186.92 Aligned_cols=446 Identities=16% Similarity=0.158 Sum_probs=258.5
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhc------------CCC------CHHHHHHHHHHHHHcCCHHHHHHHHHhhh
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLST------------NPS------DEDAMRCKVVALIKADNIDDALSTIQSSQ 81 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~------------~p~------~~~a~~~~~~~~~~~g~~~~A~~~~~~~~ 81 (666)
+-.++....+....|++.+|+.-...+=.. -|. ...+++.++.-|.....+.+|+..|+-+.
T Consensus 149 v~ell~es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiiv 228 (840)
T KOG2003|consen 149 VMELLEESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIV 228 (840)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhh
Confidence 334455555556677777777665533111 111 13455566666666666777777766553
Q ss_pred cc-----chhhhHHHHHHHHHhCCHHHHHHHHHh----cCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 005990 82 KF-----TFDFNYLKAYCLYRQNRLDEALESLKI----QEN-----NPATMLLKSQILYRSGEMDACVEFYQKLQKSKID 147 (666)
Q Consensus 82 ~~-----~~~~~~~~a~~~~~~g~~~~A~~~l~~----~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 147 (666)
.. ...+...++.++++...|..|++++.- .|. ...++...|..+.+.|.|++|+..|+......|+
T Consensus 229 knkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn 308 (840)
T KOG2003|consen 229 KNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN 308 (840)
T ss_pred cccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc
Confidence 21 123444666667777777777776653 232 2344556666666777777777777777666666
Q ss_pred hhH-HHHHHHHHHcCChhHHHHHHHHhhhcC-----------CCh-HHHHHHHHHHH-----HHhcCHHHHHHHHHHHHH
Q 005990 148 SLE-INFVAGLISAGRASEVQKTLDSLRVKA-----------TSS-FELAYNTACSL-----AEMNKYTEAEQLLLTARR 209 (666)
Q Consensus 148 ~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~-~~~~~~la~~~-----~~~g~~~~A~~~l~~a~~ 209 (666)
... +||..+++..|+-++-.+.|.+++... .++ .+.+.+-+.-- +...+-..|++..-.+.+
T Consensus 309 ~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~k 388 (840)
T KOG2003|consen 309 FIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAK 388 (840)
T ss_pred HHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 655 666666666777777777776665421 011 12222222211 112222334444444333
Q ss_pred hhhhhccCCC----------CChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhh---
Q 005990 210 IGQETLTDDN----------FAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVA--- 276 (666)
Q Consensus 210 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~--- 276 (666)
+-..-...+- +......+.....-.+.+--+.++|+++.|+++++-.-+.+ ..+...+.+|+..
T Consensus 389 iiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kd---nk~~saaa~nl~~l~f 465 (840)
T KOG2003|consen 389 IIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKD---NKTASAAANNLCALRF 465 (840)
T ss_pred HhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhcc---chhhHHHhhhhHHHHH
Confidence 3210000000 00000000111234556777889999999999987654333 2344455555543
Q ss_pred ccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHH
Q 005990 277 LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLL 356 (666)
Q Consensus 277 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 356 (666)
+++..++.++....+..+..+ + -......|.+.+.+..|+++.|.+.+.+++..+.....+++.
T Consensus 466 lqggk~~~~aqqyad~aln~d------------r----yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn 529 (840)
T KOG2003|consen 466 LQGGKDFADAQQYADIALNID------------R----YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN 529 (840)
T ss_pred HhcccchhHHHHHHHHHhccc------------c----cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH
Confidence 345555555544443322221 1 111223445666777888888888888888777777778888
Q ss_pred HHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCCh
Q 005990 357 QAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDI 435 (666)
Q Consensus 357 ~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~ 435 (666)
.+..+...|+.++|+.+|-++...--++. .+++.++.+|....+..+|+++|.++..+-| +|.++..|+.+|-+.|+.
T Consensus 530 iglt~e~~~~ldeald~f~klh~il~nn~-evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdk 608 (840)
T KOG2003|consen 530 IGLTAEALGNLDEALDCFLKLHAILLNNA-EVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDK 608 (840)
T ss_pred hcccHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccch
Confidence 88888888888888888887765544443 3778888888888888888888888888888 888888888888888888
Q ss_pred hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC
Q 005990 436 DGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 436 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
..|.+++-.....+|.+.. ...++|..|+...-+++|+.+|+++--+.|+
T Consensus 609 sqafq~~ydsyryfp~nie-------~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 609 SQAFQCHYDSYRYFPCNIE-------TIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred hhhhhhhhhcccccCcchH-------HHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 8777766555554433322 3334444455444445555555555444454
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=3.1e-20 Score=200.95 Aligned_cols=439 Identities=12% Similarity=-0.015 Sum_probs=322.7
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhh---hHHHHHHHHHhCCHHHHHHHHHhc--CCChhHHHH
Q 005990 46 VLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDF---NYLKAYCLYRQNRLDEALESLKIQ--ENNPATMLL 120 (666)
Q Consensus 46 ~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~a~~~~~~g~~~~A~~~l~~~--~~~~~~~~~ 120 (666)
..-..|+.++..+..+++.++.|+++.|+..|+++....|.. ...++.++...|++++|+..+++. |.+...+.+
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred ccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 344578899999999999999999999999999997776642 448888889999999999999983 334444444
Q ss_pred H--HHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcC
Q 005990 121 K--SQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNK 196 (666)
Q Consensus 121 l--a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 196 (666)
+ |.++...|++++|+++|+++++.+|++.+ ..++.++...++.++|+..++++...+|.+... ..++.++...++
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~ 184 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch
Confidence 4 78999999999999999999999999977 666788889999999999999999999986654 555666666788
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHH--HHhhh
Q 005990 197 YTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAV--AVNNL 274 (666)
Q Consensus 197 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~--~~~~l 274 (666)
+.+|++.|+++++..|.. ..++..+..++...|-..-|.++..+--............ .....
T Consensus 185 ~~~AL~~~ekll~~~P~n---------------~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~ 249 (822)
T PRK14574 185 NYDALQASSEAVRLAPTS---------------EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQ 249 (822)
T ss_pred HHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHH
Confidence 877999999999999542 2577888899999999999988776543222111111100 01111
Q ss_pred hhc---cC--CC----ChhHHHHHhHHHhhhhhhhhhhhHHhhcCCC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHhc
Q 005990 275 VAL---KG--PK----DVNDSLKKLDRIKEKDMQNFQLARVLDLRLS--PKQREAIYANRVLLLLHANKMDQARELVAAL 343 (666)
Q Consensus 275 ~~~---~~--~~----~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~--~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 343 (666)
+.. .. .. ....++..++.++... .... ......+......++...+++.+++..++.+
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~-----------~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRW-----------GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhc-----------cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 100 00 00 1112233333332210 0111 1122335556677888999999999999999
Q ss_pred cccCCC-CchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCC-----hhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC
Q 005990 344 PDMFPD-SVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD-----KSKIILLARAQVAAAANHPFIAAESLAKIPDIQH 417 (666)
Q Consensus 344 ~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~-----~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 417 (666)
...... -..+....|..|...++.++|+.+|..++...|. ........|...|+..+++++|..+++++.+..|
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 765422 2346667788999999999999999999876532 1222346778889999999999999999876332
Q ss_pred -------------Chh---HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHH
Q 005990 418 -------------MPA---TVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASH 481 (666)
Q Consensus 418 -------------~~~---~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 481 (666)
+|. ....++.++...|++.+|.+.+++.+...|.+.. ++..+|.++...|.+.+|..
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~-------l~~~~A~v~~~Rg~p~~A~~ 471 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQN-------LRIALASIYLARDLPRKAEQ 471 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHhcCCHHHHHH
Confidence 222 3467788899999999999999999887755543 88899999999999999999
Q ss_pred HHHHHHHhcCCh-HHHHH-HHHhhccCChhhHHHHHhcC
Q 005990 482 LFEELVKTHGSI-EALVG-LVTTSAHVDVDKAESYEKRL 518 (666)
Q Consensus 482 ~~~~~l~~~p~~-~~l~~-l~~~~~~~d~~~a~~~~~~l 518 (666)
.++.+..++|++ .+..+ ...+....++..|+.+...|
T Consensus 472 ~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 472 ELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999983 33333 34444677888888876554
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.2e-22 Score=189.30 Aligned_cols=350 Identities=17% Similarity=0.171 Sum_probs=265.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAE 193 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 193 (666)
..+-..|.-+++.|+|++||.+|.++|...|+... .|.+++|...|+|++.++...++++++|+...+++..+.++-.
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 44567788889999999999999999999988544 8999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHH------------------HHHhh-----hhhcc--------C-------------C---------C-
Q 005990 194 MNKYTEAEQLLLT------------------ARRIG-----QETLT--------D-------------D---------N- 219 (666)
Q Consensus 194 ~g~~~~A~~~l~~------------------a~~~~-----~~~~~--------~-------------~---------~- 219 (666)
+|++++|+.-..- .+... ...+. + + +
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 9999988764321 11110 00000 0 0 0
Q ss_pred --------------CCh--------------------------hhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005990 220 --------------FAE--------------------------DDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 220 --------------~~~--------------------------~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~ 259 (666)
.++ ++--.-++.++...|..++..|+.-.|...|+.++.+
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 000 0000223567778888889999999999999999999
Q ss_pred CCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Q 005990 260 NLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQAREL 339 (666)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~ 339 (666)
+|.+..++......++..+.. ...++.|+.....+ .+...+++.++.+++-.+++++|+.-
T Consensus 356 ~~~~~~lyI~~a~~y~d~~~~---~~~~~~F~~A~~ld----------------p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 356 DPAFNSLYIKRAAAYADENQS---EKMWKDFNKAEDLD----------------PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred CcccchHHHHHHHHHhhhhcc---HHHHHHHHHHHhcC----------------CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 998876543333333322222 24444443332222 22334678889999999999999999
Q ss_pred HHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCCC-
Q 005990 340 VAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHM- 418 (666)
Q Consensus 340 ~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~- 418 (666)
|++++..+|++...+..++.+++++++++++...|+.+....|..+. ++...|+++..++++++|++.|..++++.|.
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~E-vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPE-VYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999765 8999999999999999999999999988773
Q ss_pred h------hHHHHHHH-HHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcC
Q 005990 419 P------ATVATLVA-LKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG 491 (666)
Q Consensus 419 ~------~~~~~l~~-~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 491 (666)
. ..+..-+. +..-.+++..|..++++|++..| .....+..+|.+.+++|+.++|+++|++...+.-
T Consensus 496 ~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp-------kce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDP-------KCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred ccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCc-------hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1 11111111 12234889999999999988754 3334788899999999999999999999987764
Q ss_pred C
Q 005990 492 S 492 (666)
Q Consensus 492 ~ 492 (666)
.
T Consensus 569 t 569 (606)
T KOG0547|consen 569 T 569 (606)
T ss_pred h
Confidence 4
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.91 E-value=7.7e-20 Score=180.21 Aligned_cols=443 Identities=14% Similarity=0.085 Sum_probs=348.5
Q ss_pred CCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc---cchhhhHHHH
Q 005990 16 PPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQK---FTFDFNYLKA 92 (666)
Q Consensus 16 ~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~a 92 (666)
-|.++ .|+..+..+ .+.+.|..++.++.+--|.+.+.|..+ .++.-|+.|..+++++.+ .++..+..-+
T Consensus 376 iP~sv-~LWKaAVel---E~~~darilL~rAveccp~s~dLwlAl----arLetYenAkkvLNkaRe~iptd~~IWitaa 447 (913)
T KOG0495|consen 376 IPRSV-RLWKAAVEL---EEPEDARILLERAVECCPQSMDLWLAL----ARLETYENAKKVLNKAREIIPTDREIWITAA 447 (913)
T ss_pred CCchH-HHHHHHHhc---cChHHHHHHHHHHHHhccchHHHHHHH----HHHHHHHHHHHHHHHHHhhCCCChhHHHHHH
Confidence 34443 445555443 455669999999999999888877654 456779999999999844 3456777777
Q ss_pred HHHHHhCCHHHHHHHHHh-------c--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-----HHHHHHHH
Q 005990 93 YCLYRQNRLDEALESLKI-------Q--ENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-----INFVAGLI 158 (666)
Q Consensus 93 ~~~~~~g~~~~A~~~l~~-------~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~l~~~~~ 158 (666)
..--..|+.+...+++.. . .-+...|+.-|..+-..|-.--|..+....|....+..+ .+-+..+.
T Consensus 448 ~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~ 527 (913)
T KOG0495|consen 448 KLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE 527 (913)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH
Confidence 777788887777666655 1 127788999999999999988888888888876555443 66777888
Q ss_pred HcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHH
Q 005990 159 SAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAY 238 (666)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 238 (666)
..+.++-|+.+|..+++..|..-.+|...+..--..|..+.-..+|++++..+|.. + ..|+..+.
T Consensus 528 k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pka---------e------~lwlM~ak 592 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKA---------E------ILWLMYAK 592 (913)
T ss_pred hcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcc---------h------hHHHHHHH
Confidence 89999999999999999999999899999998889999999999999999999753 1 38888889
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHH
Q 005990 239 VQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREA 318 (666)
Q Consensus 239 ~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~ 318 (666)
-+...|+...|..++.++++.+|++..++..+.-... ...++..+...|.+.- .......
T Consensus 593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~---en~e~eraR~llakar-----------------~~sgTeR 652 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEF---ENDELERARDLLAKAR-----------------SISGTER 652 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhh---ccccHHHHHHHHHHHh-----------------ccCCcch
Confidence 9999999999999999999999998776654432221 1223334444442221 1111223
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHH
Q 005990 319 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA 398 (666)
Q Consensus 319 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~ 398 (666)
+++..+.+...+++.++|+.+++++++.||+...+++.+|+++.+.++.+.|...|..-+...|.+.. +|+.++.+-..
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip-LWllLakleEk 731 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP-LWLLLAKLEEK 731 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch-HHHHHHHHHHH
Confidence 55666788888999999999999999999999999999999999999999999999999999999776 99999999999
Q ss_pred cCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcc-----------------------
Q 005990 399 ANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMT----------------------- 454 (666)
Q Consensus 399 ~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~----------------------- 454 (666)
.|+...|..+|+++.-.+| ++.+|...+.+-.+.|+.+.|..++.+|++-+|++.-
T Consensus 732 ~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk 811 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK 811 (913)
T ss_pred hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH
Confidence 9999999999999998899 8889999999999999999999999999986664320
Q ss_pred CcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC-hHHHHHHHHh
Q 005990 455 EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTT 502 (666)
Q Consensus 455 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~l~~l~~~ 502 (666)
.......++..+|.+++...+++.|.+.|+++++.+|| -++.+-+..-
T Consensus 812 kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykf 860 (913)
T KOG0495|consen 812 KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKF 860 (913)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHH
Confidence 00111126668899999999999999999999999999 3444444443
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.2e-21 Score=185.62 Aligned_cols=438 Identities=14% Similarity=0.115 Sum_probs=324.6
Q ss_pred CCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh--hccchhhhHHHHH
Q 005990 16 PPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSS--QKFTFDFNYLKAY 93 (666)
Q Consensus 16 ~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~a~ 93 (666)
+.-+.+......+.+..+..|.-|+-+.+++..+. +++.-.+.++.||+-.++|+.|..++..- ...+..+.+..+.
T Consensus 12 d~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~ 90 (611)
T KOG1173|consen 12 DELSLEKYRRLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAK 90 (611)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 34466777788888889999999999999999887 78888999999999999999999888765 2334567889999
Q ss_pred HHHHhCCHHHHHHHHHh----------cCC-------------------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005990 94 CLYRQNRLDEALESLKI----------QEN-------------------NPATMLLKSQILYRSGEMDACVEFYQKLQKS 144 (666)
Q Consensus 94 ~~~~~g~~~~A~~~l~~----------~~~-------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 144 (666)
|++++.++++|+.++.. .+. ...+.++.|.+|....++++|...|.+++..
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 99999999999999882 010 2345678899999999999999999999988
Q ss_pred CCChhH--HHHHHHH----------HH-------cCChhHHH-HHHHHhh---------hcC--------CChHHHHHHH
Q 005990 145 KIDSLE--INFVAGL----------IS-------AGRASEVQ-KTLDSLR---------VKA--------TSSFELAYNT 187 (666)
Q Consensus 145 ~p~~~~--~~l~~~~----------~~-------~g~~~~A~-~~~~~~~---------~~~--------~~~~~~~~~l 187 (666)
++.+.+ ..+.... +. .+...+-+ ..|+-.. ... .++.+++...
T Consensus 171 D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ 250 (611)
T KOG1173|consen 171 DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEK 250 (611)
T ss_pred chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHH
Confidence 887766 1111110 00 11111111 1121100 011 2467788889
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHH
Q 005990 188 ACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSF 267 (666)
Q Consensus 188 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~ 267 (666)
+..++..++|.+-.++++..++.+|-.+. ..-+.+| ++...|+..+=..+-.++....|+.+..|
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dpfh~~--------------~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW 315 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDPFHLP--------------CLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSW 315 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCCCCcc--------------hHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcch
Confidence 99999999999999999999998864321 2334444 66666666665555566666667665555
Q ss_pred HHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccC
Q 005990 268 AVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF 347 (666)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 347 (666)
......++++.. ..++.+.+.+.... ...+. ..+...+..+...|..++|+..+..+.+..
T Consensus 316 ~aVg~YYl~i~k---~seARry~SKat~l-----------D~~fg-----paWl~fghsfa~e~EhdQAmaaY~tAarl~ 376 (611)
T KOG1173|consen 316 FAVGCYYLMIGK---YSEARRYFSKATTL-----------DPTFG-----PAWLAFGHSFAGEGEHDQAMAAYFTAARLM 376 (611)
T ss_pred hhHHHHHHHhcC---cHHHHHHHHHHhhc-----------Ccccc-----HHHHHHhHHhhhcchHHHHHHHHHHHHHhc
Confidence 444444444422 22444444322111 11111 122334677888899999999999999999
Q ss_pred CCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC--------Ch
Q 005990 348 PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH--------MP 419 (666)
Q Consensus 348 p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~--------~~ 419 (666)
|+.....+.+|.-|.+.++++-|.++|.+++...|.++. +...++.+....+.+.+|..+|+.++..-+ -.
T Consensus 377 ~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dpl-v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 377 PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPL-VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcch-hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence 999999999999999999999999999999999999776 788889999999999999999999873221 12
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCChHHH
Q 005990 420 ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEAL 496 (666)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~l 496 (666)
.++..||.+|.+++.+++|+..|++++...+.+. ..+..+|.+|...|+.+.|++.|.+++.+.|++...
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~-------~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA-------STHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch-------hHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence 2478999999999999999999999998875443 377888999999999999999999999999996544
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.7e-19 Score=168.99 Aligned_cols=369 Identities=11% Similarity=-0.012 Sum_probs=284.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhh---HHHHHHHHHhCCHHHHHHHHHhcC--CChhHHHHHHHHHH
Q 005990 52 SDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFN---YLKAYCLYRQNRLDEALESLKIQE--NNPATMLLKSQILY 126 (666)
Q Consensus 52 ~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~a~~~~~~g~~~~A~~~l~~~~--~~~~~~~~la~~~~ 126 (666)
.|...++..|+++-+.|....|+..|..+...-|..| .++..+ .-+.+.+..+....+ .+...-+.++.++.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~l---it~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSEL---ITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHh---hchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 3577788899999999999999999988854444333 333322 223333333333344 24455577888888
Q ss_pred HcCCHHHHHHHHHHHHhh-CCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHH
Q 005990 127 RSGEMDACVEFYQKLQKS-KIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQL 203 (666)
Q Consensus 127 ~~g~~~~A~~~~~~~l~~-~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 203 (666)
.....++++.-++..+.. .|...- ...+.+.....++++|+..|+.+.+.+|-..+-+-....+++-.++-.+-.-+
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 888999999999988876 455444 66777888899999999999999999886555555555555555543333333
Q ss_pred HHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCCh
Q 005990 204 LLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV 283 (666)
Q Consensus 204 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (666)
-+.+..++.-. .....-+|..|...++.++|+.+|+++++++|.....+
T Consensus 319 A~~v~~idKyR---------------~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aW---------------- 367 (559)
T KOG1155|consen 319 AQNVSNIDKYR---------------PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAW---------------- 367 (559)
T ss_pred HHHHHHhccCC---------------ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHH----------------
Confidence 33344444221 12566788899999999999999999999999664222
Q ss_pred hHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHh
Q 005990 284 NDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR 363 (666)
Q Consensus 284 ~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~ 363 (666)
..+ +.-|+...+...|++.++.+++.+|.|..+|+.+|++|.-
T Consensus 368 ----TLm---------------------------------GHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 368 ----TLM---------------------------------GHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred ----HHh---------------------------------hHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 111 5567788889999999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHH
Q 005990 364 ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVL 442 (666)
Q Consensus 364 ~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l 442 (666)
.+.+.=|+-+|++++...|.+.. +|..+++||.+.++.++|+.+|.+++.... +...+..||.+|.+.++.++|..+|
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnDsR-lw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPNDSR-LWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999776 999999999999999999999999998777 6677899999999999999999999
Q ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC
Q 005990 443 DSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 443 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
++.++........+++...+...++..+.+.+++++|-.+...++.-++.
T Consensus 490 ek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 490 EKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 99998663333334444445556899999999999999999988877554
No 37
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.89 E-value=5.9e-20 Score=167.65 Aligned_cols=319 Identities=12% Similarity=0.151 Sum_probs=257.3
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYC 94 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~ 94 (666)
.+|..++..+..+..++..|++..|+..|..+++.+|++..+++..+.+|+..|+-.-|+.-|.++.++.|
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp--------- 103 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKP--------- 103 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCc---------
Confidence 45677888899999999999999999999999999999999999999999999999999999998866644
Q ss_pred HHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-----------------HHHHHHH
Q 005990 95 LYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-----------------INFVAGL 157 (666)
Q Consensus 95 ~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----------------~~l~~~~ 157 (666)
+...+....|.+++++|.+++|..-|..++..+|.+.. ......+
T Consensus 104 ------------------DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~ 165 (504)
T KOG0624|consen 104 ------------------DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSA 165 (504)
T ss_pred ------------------cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33455566666677777777777777777666653321 2233344
Q ss_pred HHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHH
Q 005990 158 ISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLA 237 (666)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 237 (666)
...|+...|++.+..+++..|-+..++...+.||+..|+...|+.-+..+-++..++ ...++.++
T Consensus 166 ~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn---------------Te~~ykis 230 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN---------------TEGHYKIS 230 (504)
T ss_pred hcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc---------------hHHHHHHH
Confidence 557999999999999999999999999999999999999999999999999988432 35889999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHH
Q 005990 238 YVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQRE 317 (666)
Q Consensus 238 ~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~ 317 (666)
.+++..|+.+.++...+.+++++|+....+ ...+.+..+...
T Consensus 231 ~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf-----------------~~YKklkKv~K~--------------------- 272 (504)
T KOG0624|consen 231 QLLYTVGDAENSLKEIRECLKLDPDHKLCF-----------------PFYKKLKKVVKS--------------------- 272 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHccCcchhhHH-----------------HHHHHHHHHHHH---------------------
Confidence 999999999999999999999999775322 333333222111
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhccccCCCCch----HHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHH
Q 005990 318 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVM----PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARA 393 (666)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la 393 (666)
...+.-....++|.++++..+.+++..|..+. ..-.+..++...+++.+|+..+..++...|++.. ++...|
T Consensus 273 ---les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~-~l~dRA 348 (504)
T KOG0624|consen 273 ---LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ-VLCDRA 348 (504)
T ss_pred ---HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH-HHHHHH
Confidence 11145567889999999999999999998543 3344556677789999999999999999999655 889999
Q ss_pred HHHHHcCChhHHHHHHhcCcCCCC
Q 005990 394 QVAAAANHPFIAAESLAKIPDIQH 417 (666)
Q Consensus 394 ~~~~~~g~~~~A~~~l~~~~~~~~ 417 (666)
..|+....|+.|+..|+++.+.++
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999988
No 38
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.5e-20 Score=182.91 Aligned_cols=365 Identities=15% Similarity=0.130 Sum_probs=291.7
Q ss_pred CcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh----hc-----------
Q 005990 18 PPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSS----QK----------- 82 (666)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~----~~----------- 82 (666)
.++.+.+-.+..++-.++|+.|......- .....+..+.+..+.|+..+.+|++|+.++... ..
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 34557788888888888888888777665 455567788888899999999999999988833 00
Q ss_pred -------------cchhhhHHHHHHHHHhCCHHHHHH-------------------------------------------
Q 005990 83 -------------FTFDFNYLKAYCLYRQNRLDEALE------------------------------------------- 106 (666)
Q Consensus 83 -------------~~~~~~~~~a~~~~~~g~~~~A~~------------------------------------------- 106 (666)
......+.++.+|..+.+.++|..
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~ 205 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLT 205 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhh
Confidence 000111222222222222222221
Q ss_pred ---------HHHh-------------cC--------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH---HHH
Q 005990 107 ---------SLKI-------------QE--------NNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE---INF 153 (666)
Q Consensus 107 ---------~l~~-------------~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~l 153 (666)
.++- .+ ++..+....|+.++..++|.++.++.+.++..+|-+.. +.+
T Consensus 206 ~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~i 285 (611)
T KOG1173|consen 206 KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHI 285 (611)
T ss_pred hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHH
Confidence 1110 11 15677788999999999999999999999999988777 666
Q ss_pred HHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHH
Q 005990 154 VAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIA 233 (666)
Q Consensus 154 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (666)
+ ++...|+..+-..+-.+++...|+.+..||..|+.|...|++.+|..+|.++..+++. ++++|
T Consensus 286 a-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~---------------fgpaW 349 (611)
T KOG1173|consen 286 A-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT---------------FGPAW 349 (611)
T ss_pred H-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc---------------ccHHH
Confidence 6 7788888888777778889999999999999999999999999999999999999944 56899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCH
Q 005990 234 VQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSP 313 (666)
Q Consensus 234 ~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~ 313 (666)
+..|..+...|..++|+..|..+-++-|.....
T Consensus 350 l~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP----------------------------------------------- 382 (611)
T KOG1173|consen 350 LAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP----------------------------------------------- 382 (611)
T ss_pred HHHhHHhhhcchHHHHHHHHHHHHHhccCCcch-----------------------------------------------
Confidence 999999999999999999999998877644200
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCC----h--hHH
Q 005990 314 KQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD----K--SKI 387 (666)
Q Consensus 314 ~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~----~--~~~ 387 (666)
.+.++.-|...+++.-|.++|.++....|.++.....+|.+.+..+.|.+|..+|+.++..-++ . -..
T Consensus 383 ------~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p 456 (611)
T KOG1173|consen 383 ------SLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP 456 (611)
T ss_pred ------HHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH
Confidence 0222667888999999999999999999999999999999999999999999999998843222 1 123
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 005990 388 ILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNA 452 (666)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~ 452 (666)
.+..+|.++.+.+.+++|+..+++++...| ++.+...+|-+|..+|+++.|++.|.+++.+.|++
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 588999999999999999999999999999 99999999999999999999999999998876443
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.2e-21 Score=194.88 Aligned_cols=292 Identities=12% Similarity=0.058 Sum_probs=246.4
Q ss_pred HHHHHHHhCCHHHHHHHHHhcCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChh
Q 005990 91 KAYCLYRQNRLDEALESLKIQEN----NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRAS 164 (666)
Q Consensus 91 ~a~~~~~~g~~~~A~~~l~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~ 164 (666)
.++...-.-+..+|+..|.+.|. ...++..+|..|+.+++|++|..+|+.+-+..|-..+ --+..++....+.-
T Consensus 325 ~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v 404 (638)
T KOG1126|consen 325 EGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV 404 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH
Confidence 33444445567889999988554 5678889999999999999999999999888886555 22222222222222
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcC
Q 005990 165 EVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLG 244 (666)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 244 (666)
+--.+-+.++..+|+.++.|-.+|.||.-+++++.|+++|++|+++++. ++.+|..+|+=+....
T Consensus 405 ~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~---------------faYayTLlGhE~~~~e 469 (638)
T KOG1126|consen 405 ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR---------------FAYAYTLLGHESIATE 469 (638)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc---------------cchhhhhcCChhhhhH
Confidence 2223345667889999999999999999999999999999999999943 4468899999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHH
Q 005990 245 NTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRV 324 (666)
Q Consensus 245 ~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a 324 (666)
+++.|...|+.++..+|.+-. .++.++
T Consensus 470 e~d~a~~~fr~Al~~~~rhYn-----------------------------------------------------AwYGlG 496 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDPRHYN-----------------------------------------------------AWYGLG 496 (638)
T ss_pred HHHhHHHHHHhhhcCCchhhH-----------------------------------------------------HHHhhh
Confidence 999999999999998885521 124558
Q ss_pred HHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhH
Q 005990 325 LLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFI 404 (666)
Q Consensus 325 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~ 404 (666)
.+|+.+++++.|.-.|+.++..+|.+..+....+.++.+.|+.++|+.+|++++..+|.++. ..+..+.++...+++++
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l-~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL-CKYHRASILFSLGRYVE 575 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch-hHHHHHHHHHhhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999877 88999999999999999
Q ss_pred HHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 005990 405 AAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLN 451 (666)
Q Consensus 405 A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~ 451 (666)
|+..|+.+.++.| ...++..+|.+|.+.|+.+.|+..|.-|..+.|.
T Consensus 576 al~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 576 ALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 9999999999999 7778899999999999999999999988777543
No 40
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.2e-19 Score=176.32 Aligned_cols=387 Identities=13% Similarity=0.075 Sum_probs=289.5
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch---hhhHHHHHHHHH
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF---DFNYLKAYCLYR 97 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~a~~~~~ 97 (666)
..+-.+++..+..|+|+.|+.+|..++.++|.|...+.....+|..+|+|++|+.--.+...+.| ..+..+|..+.-
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 34567889999999999999999999999999999999999999999999999999999877765 578899999999
Q ss_pred hCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCC------------------------HHHHHHHHHHHHhhCCChh
Q 005990 98 QNRLDEALESLKI----QENNPATMLLKSQILYRSGE------------------------MDACVEFYQKLQKSKIDSL 149 (666)
Q Consensus 98 ~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~------------------------~~~A~~~~~~~l~~~p~~~ 149 (666)
+|+|++|+..|.. .|++..++..+++++...-. .+.+.......+..+|.+.
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 9999999999886 66777888888777622100 0001111111111111100
Q ss_pred H----------------------------------------------------------------HHHHHHHHHcCChhH
Q 005990 150 E----------------------------------------------------------------INFVAGLISAGRASE 165 (666)
Q Consensus 150 ~----------------------------------------------------------------~~l~~~~~~~g~~~~ 165 (666)
. .++|.......++..
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 0 456777777888999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCC
Q 005990 166 VQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGN 245 (666)
Q Consensus 166 A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 245 (666)
|++.|..++.++ .+...+.+.+.+|+..|.+.+.+.....+++...+. -.++ ..++.....+|..|..+++
T Consensus 243 a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-------rad~-klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 243 AIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-------RADY-KLIAKALARLGNAYTKRED 313 (539)
T ss_pred HHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-------HHHH-HHHHHHHHHhhhhhhhHHh
Confidence 999999999988 778888899999999999999999888888877442 1122 2355566668889999999
Q ss_pred hHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHH
Q 005990 246 TQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVL 325 (666)
Q Consensus 246 ~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~ 325 (666)
++.|+.+|.+++...-.. +....++..++.+..... .....+....-....+.
T Consensus 314 ~~~ai~~~~kaLte~Rt~------------------~~ls~lk~~Ek~~k~~e~---------~a~~~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTP------------------DLLSKLKEAEKALKEAER---------KAYINPEKAEEEREKGN 366 (539)
T ss_pred HHHHHHHHHHHhhhhcCH------------------HHHHHHHHHHHHHHHHHH---------HHhhChhHHHHHHHHHH
Confidence 999999999988654331 011112222222211100 01111111223344588
Q ss_pred HHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHH
Q 005990 326 LLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIA 405 (666)
Q Consensus 326 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A 405 (666)
.++..|+|..|+..|.+++...|++..++..+|.+|.+.|.+..|+...+.+++.+|+... .++.-+.++....+|++|
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k-gy~RKg~al~~mk~ydkA 445 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK-AYLRKGAALRAMKEYDKA 445 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH-HHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999766 888889999999999999
Q ss_pred HHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHH
Q 005990 406 AESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDS 444 (666)
Q Consensus 406 ~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~ 444 (666)
++.|+.+++.+| +..+...+..++..+.......+..++
T Consensus 446 leay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 446 LEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 999999999999 666666666666654334444455554
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1.4e-19 Score=170.87 Aligned_cols=295 Identities=13% Similarity=0.071 Sum_probs=219.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH---HHHHHHHHH--cCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 005990 119 LLKSQILYRSGEMDACVEFYQKLQKSKIDSLE---INFVAGLIS--AGRASEVQKTLDSLRVKATSSFELAYNTACSLAE 193 (666)
Q Consensus 119 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 193 (666)
...|.-++++|+++.|++++.-.-+.+..... .||..+++. -.++.+|..+-+.++..+.-++.++.|.|.+.+.
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA 502 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence 56788899999999999998765443322222 777777766 4578889999899999988899999999999999
Q ss_pred hcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhh
Q 005990 194 MNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNN 273 (666)
Q Consensus 194 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~ 273 (666)
.|++++|.+.|..++..+. ....+++++|..+..+|+.++|+.+|-++-.+-.++..++
T Consensus 503 ngd~dka~~~ykeal~nda---------------sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl------ 561 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDA---------------SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVL------ 561 (840)
T ss_pred cCcHHHHHHHHHHHHcCch---------------HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHH------
Confidence 9999999999999988762 2446899999999999999999999988765544443211
Q ss_pred hhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchH
Q 005990 274 LVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMP 353 (666)
Q Consensus 274 l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 353 (666)
+.++.+|....+..+|++++.++...-|+++.+
T Consensus 562 -----------------------------------------------~qianiye~led~aqaie~~~q~~slip~dp~i 594 (840)
T KOG2003|consen 562 -----------------------------------------------VQIANIYELLEDPAQAIELLMQANSLIPNDPAI 594 (840)
T ss_pred -----------------------------------------------HHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHH
Confidence 112566666777788888888888888888888
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCCChhHH-HHHHHHHHHc
Q 005990 354 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATV-ATLVALKERA 432 (666)
Q Consensus 354 ~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~-~~l~~~~~~~ 432 (666)
+..++.+|-+.|+-.+|..++-....-.|.+.. ..-.++..|+...-+++|+.+|+++.-+.|+..-| ..++.++.+.
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie-~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIE-TIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchH-HHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence 888888888888888888887777777787654 66667778888888888888888887778844444 5567777888
Q ss_pred CChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHH
Q 005990 433 GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELV 487 (666)
Q Consensus 433 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 487 (666)
|+|..|.++|...-..+|.+. +...++..++.-+ -+.++++=..-++++-
T Consensus 674 gnyqka~d~yk~~hrkfpedl----dclkflvri~~dl-gl~d~key~~klek~e 723 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPEDL----DCLKFLVRIAGDL-GLKDAKEYADKLEKAE 723 (840)
T ss_pred ccHHHHHHHHHHHHHhCccch----HHHHHHHHHhccc-cchhHHHHHHHHHHHH
Confidence 888888888888776665443 3333444443322 2234444444444443
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.5e-18 Score=164.88 Aligned_cols=437 Identities=13% Similarity=0.051 Sum_probs=300.3
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCH
Q 005990 22 DLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRL 101 (666)
Q Consensus 22 ~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 101 (666)
..+..+..++....|+.|.-.++.+.. ....+..-.|.+-.|.-+.-....+-...... .-.....+..++..
T Consensus 80 ~~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~--~~~~~~~l~~L~~~ 152 (559)
T KOG1155|consen 80 DIYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLES--FSRINSELIELNKP 152 (559)
T ss_pred chhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchh--hhhhhhHHHHHhhH
Confidence 345666667777777777766665532 34444444454444433322222211111000 00111111111111
Q ss_pred HHHHHHHHh-cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCC
Q 005990 102 DEALESLKI-QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKAT 178 (666)
Q Consensus 102 ~~A~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 178 (666)
= +.... ...|...+++.|.++...|....|+..|..++...|-... ..|+.+.. -++....+...-|
T Consensus 153 l---e~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit-------~~e~~~~l~~~l~ 222 (559)
T KOG1155|consen 153 L---ESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT-------DIEILSILVVGLP 222 (559)
T ss_pred H---HHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc-------hHHHHHHHHhcCc
Confidence 1 11111 2337888999999999999999999999999988888776 33333221 1222222222223
Q ss_pred --ChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 005990 179 --SSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDI 256 (666)
Q Consensus 179 --~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~ 256 (666)
.++-.-+.++.++....+.++++.-++......-. ...-+..+.|.+...+.++++|+..|+.+
T Consensus 223 ~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~--------------~~~~i~~~~A~~~y~~rDfD~a~s~Feei 288 (559)
T KOG1155|consen 223 SDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFP--------------NSMYIKTQIAAASYNQRDFDQAESVFEEI 288 (559)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--------------ccHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34545567888888888999998888887776421 12247788899999999999999999999
Q ss_pred HhhCCCCHhHHHHHHhhhhhccCCCCh-hHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHH
Q 005990 257 IKRNLADESSFAVAVNNLVALKGPKDV-NDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQ 335 (666)
Q Consensus 257 l~~~~~~~~~~~~~~~~l~~~~~~~~~-~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~ 335 (666)
.+.+|-...-.....|.++..+..... +.+...+ . -.++-.. ..--.+..|...++.+.
T Consensus 289 ~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~---------------~-idKyR~E----TCCiIaNYYSlr~eHEK 348 (559)
T KOG1155|consen 289 RKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS---------------N-IDKYRPE----TCCIIANYYSLRSEHEK 348 (559)
T ss_pred HhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH---------------H-hccCCcc----ceeeehhHHHHHHhHHH
Confidence 999997665555555655554432221 1111111 0 0111110 11122566778899999
Q ss_pred HHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCC
Q 005990 336 ARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI 415 (666)
Q Consensus 336 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 415 (666)
|+.+|+.+++.+|....+|.++|.-|...++...|+..|+.+++.+|.+-. +|+.++|.|.-.+-..=|+-+|+++...
T Consensus 349 Av~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR-AWYGLGQaYeim~Mh~YaLyYfqkA~~~ 427 (559)
T KOG1155|consen 349 AVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR-AWYGLGQAYEIMKMHFYALYYFQKALEL 427 (559)
T ss_pred HHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH-HHhhhhHHHHHhcchHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999655 9999999999999999999999999999
Q ss_pred CC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhc----
Q 005990 416 QH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH---- 490 (666)
Q Consensus 416 ~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---- 490 (666)
.| ++.+|..||.+|.+.++.++|+..|.+++.... . ...++..+|.+|.+.++.++|..+|++-++..
T Consensus 428 kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d------t-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg 500 (559)
T KOG1155|consen 428 KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD------T-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEG 500 (559)
T ss_pred CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc------c-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Confidence 99 999999999999999999999999999988641 1 22377799999999999999999999999843
Q ss_pred ---CChHHHHHHHHh-h--ccCChhhHHHHHhcC
Q 005990 491 ---GSIEALVGLVTT-S--AHVDVDKAESYEKRL 518 (666)
Q Consensus 491 ---p~~~~l~~l~~~-~--~~~d~~~a~~~~~~l 518 (666)
|+ ..-+.+..+ + ...|.++|..+....
T Consensus 501 ~~~~~-t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 501 EIDDE-TIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred ccchH-HHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 22 111222222 2 567888888876543
No 43
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=1.7e-17 Score=152.31 Aligned_cols=426 Identities=13% Similarity=0.087 Sum_probs=293.0
Q ss_pred HHHHhhhccHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhhhcc---chhhhHHHHHHHHHhCCHH
Q 005990 27 LNRHIERSEFEQAVKVADQVLSTNPSDE-DAMRCKVVALIKADNIDDALSTIQSSQKF---TFDFNYLKAYCLYRQNRLD 102 (666)
Q Consensus 27 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~a~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~a~~~~~~g~~~ 102 (666)
+..++...||..|+.+++-.+..+.... .....+|.|++++|+|++|+..|.-+... +..++..+|.|++-+|.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 5556788999999999998886655443 66778999999999999999999988443 3478889999999999999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHH
Q 005990 103 EALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFE 182 (666)
Q Consensus 103 ~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 182 (666)
+|..+..+.|+++-...++-.+..+.|+-++-...-+. +.... .....|+.+....-+|.+|+.+|.+++..+|+...
T Consensus 109 eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~-LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 109 EAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSS-LQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHH-HhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 99999999999998888888888899887665544333 32211 11167777777777899999999999999999888
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh-CC
Q 005990 183 LAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR-NL 261 (666)
Q Consensus 183 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~-~~ 261 (666)
+-.++|.||..+.-|+-+.+++.-.+...|++. .+...++...++.=+-.-|..-...+... +.
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt---------------iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~ 251 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST---------------IAKNLKACNLFRLINGRTAEDEKKELADNIDQ 251 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH---------------HHHHHHHHHHhhhhccchhHHHHHHHHhcccc
Confidence 889999999999999999999999888875432 35566666666543333333333333321 22
Q ss_pred CCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 005990 262 ADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVA 341 (666)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~ 341 (666)
..+....+...|++.+.+... +++.+-.++... .....|++..|+.+++..+|..++.
T Consensus 252 ~~~f~~~l~rHNLVvFrngEg---ALqVLP~L~~~I-------------------PEARlNL~iYyL~q~dVqeA~~L~K 309 (557)
T KOG3785|consen 252 EYPFIEYLCRHNLVVFRNGEG---ALQVLPSLMKHI-------------------PEARLNLIIYYLNQNDVQEAISLCK 309 (557)
T ss_pred cchhHHHHHHcCeEEEeCCcc---HHHhchHHHhhC-------------------hHhhhhheeeecccccHHHHHHHHh
Confidence 233334455666666655443 333332211110 1133566777888888888888877
Q ss_pred hccccCCCCchHHHHHHHHHHhh-------------------------------------------CChhHHHHHHHHHH
Q 005990 342 ALPDMFPDSVMPLLLQAAVLVRE-------------------------------------------NKAGKAEELLGQFA 378 (666)
Q Consensus 342 ~~~~~~p~~~~~~~~~a~~~~~~-------------------------------------------g~~~~A~~~l~~~~ 378 (666)
.+ .|..+.-+++.|.+.... .++++.+.++..+-
T Consensus 310 dl---~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~ 386 (557)
T KOG3785|consen 310 DL---DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE 386 (557)
T ss_pred hc---CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 344444444444443333 33444444444433
Q ss_pred hhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCc
Q 005990 379 EKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH--MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTED 456 (666)
Q Consensus 379 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~ 456 (666)
.-.-+++. ..+.+|+.++..|++.+|.++|-++....- .--....|+.+|.+.+..+.|..++-+. ...
T Consensus 387 sYF~NdD~-Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--------~t~ 457 (557)
T KOG3785|consen 387 SYFTNDDD-FNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--------NTP 457 (557)
T ss_pred HHhcCcch-hhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--------CCc
Confidence 33333333 778888888889999999998887755442 2233477888899989888888776542 122
Q ss_pred chHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCCh-------HHHHHHHHhh
Q 005990 457 NKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI-------EALVGLVTTS 503 (666)
Q Consensus 457 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~l~~l~~~~ 503 (666)
.+..+++..++...+..+.+--|.+.|..+-..+|+. .+.+++...+
T Consensus 458 ~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKRGACaG~f~~l 511 (557)
T KOG3785|consen 458 SERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEGKRGACAGLFRQL 511 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCCccchHHHHHHHH
Confidence 3444567777888888888888888888888888762 3455555544
No 44
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.86 E-value=3.9e-18 Score=168.82 Aligned_cols=433 Identities=16% Similarity=0.148 Sum_probs=283.7
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhC
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQN 99 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g 99 (666)
-.++|..+..++..++|...++.++.+|+..|.+.+.+..+|..+..+|+-++|......+...
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~---------------- 70 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN---------------- 70 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhcc----------------
Confidence 4588999999999999999999999999999999999999999999999999999998887443
Q ss_pred CHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcC
Q 005990 100 RLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKA 177 (666)
Q Consensus 100 ~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 177 (666)
.+.+..+||.+|-++....+|++|+.+|+.++...|++.. ..++....++++++.....-.+.++..
T Consensus 71 -----------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 71 -----------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred -----------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 3345667777777777777777777777777777777766 555555666677776666666666777
Q ss_pred CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCC-----------------C-----------hhhHhhhh
Q 005990 178 TSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNF-----------------A-----------EDDIEIEL 229 (666)
Q Consensus 178 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~-----------------~-----------~~~~~~~~ 229 (666)
|.....|+..|..++-.|++..|...++...+.+..++...+. + ...+ .+-
T Consensus 140 ~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dk 218 (700)
T KOG1156|consen 140 PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDK 218 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHH
Confidence 7777777777777777777777777766666655322211000 0 0000 011
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhh-------
Q 005990 230 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQ------- 302 (666)
Q Consensus 230 ~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~------- 302 (666)
.......|.++..+|++++|..+|...+..+|++......+...+.... +....+..+.....+...
T Consensus 219 la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~------d~~~~lk~ly~~ls~~y~r~e~p~R 292 (700)
T KOG1156|consen 219 LAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIK------DMLEALKALYAILSEKYPRHECPRR 292 (700)
T ss_pred HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHh------hhHHHHHHHHHHHhhcCcccccchh
Confidence 1244567889999999999999999999999998766555444432110 111111111111000000
Q ss_pred hhHHhhcCCCHHHHH-------------HHHHHHHHHHHHcCChHHHHHHHHhcc-------cc----C--------CCC
Q 005990 303 LARVLDLRLSPKQRE-------------AIYANRVLLLLHANKMDQARELVAALP-------DM----F--------PDS 350 (666)
Q Consensus 303 ~~~~l~~~~~~~q~~-------------~~~~~~a~~~~~~~~~~~A~~~~~~~~-------~~----~--------p~~ 350 (666)
++-.+.......... .+..+.-.+|-.-. .+ .++++++ .. + |-.
T Consensus 293 lplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~---k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pt 368 (700)
T KOG1156|consen 293 LPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPE---KV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPT 368 (700)
T ss_pred ccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchh---Hh-HHHHHHHHHHHhhcccccCCCcccccccCCch
Confidence 000000000000000 00001111111101 10 0222221 10 1 111
Q ss_pred c--hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHH
Q 005990 351 V--MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVA 427 (666)
Q Consensus 351 ~--~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~ 427 (666)
. ..++.++.-+...|+++.|..++..++...|.. ++.++.-|.++...|++++|..+++.+.+++- +..+...-+.
T Consensus 369 tllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTl-iEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAK 447 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTL-IELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAK 447 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchH-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 1 334677888889999999999999999999995 45899999999999999999999999999987 6667778888
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcC
Q 005990 428 LKERAGDIDGAAAVLDSAIKWWLNAMT--EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG 491 (666)
Q Consensus 428 ~~~~~g~~~~A~~~l~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 491 (666)
...+.++.++|.+++.+.....-+... .+.+..++...-|..|.++|++..|+.-|..+.+...
T Consensus 448 YmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~ 513 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYK 513 (700)
T ss_pred HHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 899999999999888765432211111 1233444555668999999999999988877766553
No 45
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.86 E-value=5.1e-17 Score=160.60 Aligned_cols=430 Identities=15% Similarity=0.122 Sum_probs=335.3
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYC 94 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~ 94 (666)
.-|.++.-++..+..-. +...-..++.++|+..|++...|... ..+..-++|+-++.++.+.-| ...++-.+
T Consensus 344 ~~P~Sv~lW~kA~dLE~---~~~~K~RVlRKALe~iP~sv~LWKaA----VelE~~~darilL~rAveccp-~s~dLwlA 415 (913)
T KOG0495|consen 344 FLPTSVRLWLKAADLES---DTKNKKRVLRKALEHIPRSVRLWKAA----VELEEPEDARILLERAVECCP-QSMDLWLA 415 (913)
T ss_pred hCCCChhhhhhHHhhhh---HHHHHHHHHHHHHHhCCchHHHHHHH----HhccChHHHHHHHHHHHHhcc-chHHHHHH
Confidence 45677766665554332 34455678999999999987777543 345677789999999965533 23345556
Q ss_pred HHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCChhH------HHHHHHHHHcCCh
Q 005990 95 LYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKS-KIDSLE------INFVAGLISAGRA 163 (666)
Q Consensus 95 ~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~------~~l~~~~~~~g~~ 163 (666)
|.++.-|+.|..++.+ .|.++.+|..-+.+--.+|+.+.-..+..+.+.. ..+... +.-+..+-..|..
T Consensus 416 larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 7788899999999987 6779999999999999999999988888887652 222111 4444455556666
Q ss_pred hHHHHHHHHhhhc---CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHH
Q 005990 164 SEVQKTLDSLRVK---ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQ 240 (666)
Q Consensus 164 ~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 240 (666)
--+..+...++.. ..+....|.+-+..+...+.++-|...|..+++..+.. . .+|...++.-
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k----------~-----slWlra~~~e 560 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCK----------K-----SLWLRAAMFE 560 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccch----------h-----HHHHHHHHHH
Confidence 6666666666553 34566789999999999999999999999999998542 1 5899999998
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHH
Q 005990 241 QLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIY 320 (666)
Q Consensus 241 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~ 320 (666)
..-|..++-..++++++...|..+.++.......... .++-.+...+.++++..++ ...++
T Consensus 561 k~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a---gdv~~ar~il~~af~~~pn----------------seeiw 621 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA---GDVPAARVILDQAFEANPN----------------SEEIW 621 (913)
T ss_pred HhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc---CCcHHHHHHHHHHHHhCCC----------------cHHHH
Confidence 8999999999999999999998876665543332222 3344555556555443322 22345
Q ss_pred HHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcC
Q 005990 321 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN 400 (666)
Q Consensus 321 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g 400 (666)
+....+.+...+++.|+.+|.++....| ...+++-.+.+...+++.++|+++++.+++.+|+... +++.++|++.+.+
T Consensus 622 laavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K-l~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHK-LWLMLGQIEEQME 699 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH-HHHHHhHHHHHHH
Confidence 5557788899999999999999987655 3467777888888899999999999999999999876 9999999999999
Q ss_pred ChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhH
Q 005990 401 HPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDA 479 (666)
Q Consensus 401 ~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 479 (666)
+.+.|.+.|..-+...| .+-+|..|+.+-...|..-.|..+|+++.-.+|.+. .+|.....+-++.|+.+.|
T Consensus 700 ~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~-------~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA-------LLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc-------hhHHHHHHHHHHcCCHHHH
Confidence 99999999999999999 788999999999999999999999999977654433 3888889999999999999
Q ss_pred HHHHHHHHHhcCChHH
Q 005990 480 SHLFEELVKTHGSIEA 495 (666)
Q Consensus 480 ~~~~~~~l~~~p~~~~ 495 (666)
.....++++..|++..
T Consensus 773 ~~lmakALQecp~sg~ 788 (913)
T KOG0495|consen 773 ELLMAKALQECPSSGL 788 (913)
T ss_pred HHHHHHHHHhCCccch
Confidence 9999999999998543
No 46
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=3.1e-18 Score=175.88 Aligned_cols=332 Identities=15% Similarity=0.112 Sum_probs=232.8
Q ss_pred hHHHHHHHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcC
Q 005990 88 NYLKAYCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAG 161 (666)
Q Consensus 88 ~~~~a~~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g 161 (666)
.+..|..++-.|++++|..++.. .|.+..+|..||.+|-.+|+.++|+..+-.+..++|.+.+ ..++....+.|
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 34556666666777777776654 6677788888888888888888888877777777777777 66777777788
Q ss_pred ChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHH
Q 005990 162 RASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQ 241 (666)
Q Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 241 (666)
++.+|.-+|.+++..+|.+++..+..+.+|..+|++..|...|.+++.++| +.|++. +.......+..+.
T Consensus 222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p---------~~d~er-~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP---------PVDIER-IEDLIRRVAHYFI 291 (895)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC---------chhHHH-HHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888875 233311 1123334466666
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHH
Q 005990 242 LLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYA 321 (666)
Q Consensus 242 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~ 321 (666)
..++-+.|++.++.++....+.. +..+ ..
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~-----------------------------------------------~~ed----~n 320 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEA-----------------------------------------------SLED----LN 320 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccc-----------------------------------------------cccH----HH
Confidence 67766777777777765221100 0000 01
Q ss_pred HHHHHHHHcCChHHHHHHHHhccc-----------------c-------CCC----CchH-HHHHHHHHHhhCChhHHHH
Q 005990 322 NRVLLLLHANKMDQARELVAALPD-----------------M-------FPD----SVMP-LLLQAAVLVRENKAGKAEE 372 (666)
Q Consensus 322 ~~a~~~~~~~~~~~A~~~~~~~~~-----------------~-------~p~----~~~~-~~~~a~~~~~~g~~~~A~~ 372 (666)
-++.+++...+++.|...+..... . .|+ +..+ .+..+.+..+.++..+++.
T Consensus 321 i~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll 400 (895)
T KOG2076|consen 321 ILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALL 400 (895)
T ss_pred HHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHH
Confidence 113444444444444444333222 0 011 1122 3444445555666666665
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 005990 373 LLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH--MPATVATLVALKERAGDIDGAAAVLDSAIKWWL 450 (666)
Q Consensus 373 ~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~ 450 (666)
.+..--...|....++++.++.++...|++.+|+.+|..+....+ +..+|..+|.+|..+|.+++|++.|++++...|
T Consensus 401 ~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p 480 (895)
T KOG2076|consen 401 HFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP 480 (895)
T ss_pred HHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 554433333777788999999999999999999999999988766 667899999999999999999999999999875
Q ss_pred HhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHH
Q 005990 451 NAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELV 487 (666)
Q Consensus 451 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 487 (666)
.+.. +...++.++.+.|+.++|.+.++.+.
T Consensus 481 ~~~D-------~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 481 DNLD-------ARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred Cchh-------hhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 5433 77788999999999999999999987
No 47
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.2e-16 Score=148.10 Aligned_cols=367 Identities=11% Similarity=0.068 Sum_probs=204.9
Q ss_pred hhhHHHHHHHHHhCCHHHHHHHHHhcCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH------------
Q 005990 86 DFNYLKAYCLYRQNRLDEALESLKIQEN---NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE------------ 150 (666)
Q Consensus 86 ~~~~~~a~~~~~~g~~~~A~~~l~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------ 150 (666)
+..+-.+.||-..++-+.|+..+...|. .+.....++..+..-++..++.-.|...+...|-...
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g 177 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNG 177 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcc
Confidence 3445667777777777777777777654 4555566666665555555555555555443332222
Q ss_pred ----------------------HHHHHHHHHcCChhHHHH--HHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 005990 151 ----------------------INFVAGLISAGRASEVQK--TLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLT 206 (666)
Q Consensus 151 ----------------------~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 206 (666)
.-.+.+.+-.++...|.. ++-.....-|++..++..+|.+++..|++.+|+..|++
T Consensus 178 ~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~ 257 (564)
T KOG1174|consen 178 NEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSS 257 (564)
T ss_pred hhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHH
Confidence 001111111222222222 22222334455555666666666666666666666666
Q ss_pred HHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHH
Q 005990 207 ARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDS 286 (666)
Q Consensus 207 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a 286 (666)
+..+++..+ ...-..|+++...|+++.-..+...++.........+.+....++ ...++..+
T Consensus 258 ~~~~dpy~i---------------~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~---~~K~~~rA 319 (564)
T KOG1174|consen 258 TLCANPDNV---------------EAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY---DEKKFERA 319 (564)
T ss_pred HhhCChhhh---------------hhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh---hhhhHHHH
Confidence 655553221 233444555555555555555444444433222222222111111 01111111
Q ss_pred HHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCC
Q 005990 287 LKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENK 366 (666)
Q Consensus 287 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~ 366 (666)
+...+..+..+++. ...+...+.+++..++.++|.-.|..+...-|-+...+-.+...|...|.
T Consensus 320 L~~~eK~I~~~~r~----------------~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 320 LNFVEKCIDSEPRN----------------HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred HHHHHHHhccCccc----------------chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence 11111111111000 00112235556666666666666666666666665666555566666666
Q ss_pred hhHHHHHHHHHHhhCCChhHHHHHHH-HHHHHH-cCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHH
Q 005990 367 AGKAEELLGQFAEKLPDKSKIILLAR-AQVAAA-ANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLD 443 (666)
Q Consensus 367 ~~~A~~~l~~~~~~~p~~~~~~~~~l-a~~~~~-~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~ 443 (666)
+.+|.-.-..++...|.+.. .+..+ +.++.. ----++|..++++.+.+.| .-..+..++.++...|.+..++.+++
T Consensus 384 ~kEA~~~An~~~~~~~~sA~-~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 384 FKEANALANWTIRLFQNSAR-SLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHHHhhcchh-hhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 66666666666666555444 22222 222222 2224567778888888888 56667889999999999999999999
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCChHH
Q 005990 444 SAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEA 495 (666)
Q Consensus 444 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 495 (666)
+++..+++. .+...+|+++...+.+++|.+.|..++.++|++..
T Consensus 463 ~~L~~~~D~--------~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 463 KHLIIFPDV--------NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHhhcccc--------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 999887433 27889999999999999999999999999998543
No 48
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=6.1e-18 Score=158.36 Aligned_cols=368 Identities=13% Similarity=0.023 Sum_probs=286.4
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh--------------
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSS-------------- 80 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~-------------- 80 (666)
-.|.+.+..+..+.++...++-..|+....++...- ..+.....++..+-+-++-.++.-.+...
T Consensus 92 ~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~l 170 (564)
T KOG1174|consen 92 PEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEAL 170 (564)
T ss_pred CCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHH
Confidence 457788899999999999999999998877654332 12333344444444444433333222222
Q ss_pred -----------------hccc---hhhh-HHHHHHHHHhCCHHHHHHHH------HhcCCChhHHHHHHHHHHHcCCHHH
Q 005990 81 -----------------QKFT---FDFN-YLKAYCLYRQNRLDEALESL------KIQENNPATMLLKSQILYRSGEMDA 133 (666)
Q Consensus 81 -----------------~~~~---~~~~-~~~a~~~~~~g~~~~A~~~l------~~~~~~~~~~~~la~~~~~~g~~~~ 133 (666)
.... +..+ .-++++....++...|..++ ...+++...+..+|.+++..|++.+
T Consensus 171 l~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~ 250 (564)
T KOG1174|consen 171 LELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQ 250 (564)
T ss_pred HHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchH
Confidence 0001 1111 13344444455554444433 2267799999999999999999999
Q ss_pred HHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 005990 134 CVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIG 211 (666)
Q Consensus 134 A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 211 (666)
|+..|+++...+|+... -.++..+...|+++....+...+.........-|+--+++.+...+|..|+.+-++++..+
T Consensus 251 a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~ 330 (564)
T KOG1174|consen 251 AEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE 330 (564)
T ss_pred HHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC
Confidence 99999999999999887 5667777789999998888888888877788889999999999999999999999999999
Q ss_pred hhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhH
Q 005990 212 QETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLD 291 (666)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~ 291 (666)
+.+. +++...|.++..+|+.++|+-.|+.+..+.|.+. ++.
T Consensus 331 ~r~~---------------~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL--------------------~~Y---- 371 (564)
T KOG1174|consen 331 PRNH---------------EALILKGRLLIALERHTQAVIAFRTAQMLAPYRL--------------------EIY---- 371 (564)
T ss_pred cccc---------------hHHHhccHHHHhccchHHHHHHHHHHHhcchhhH--------------------HHH----
Confidence 5543 5889999999999999999999999998887543 111
Q ss_pred HHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHH-HHHHh-hCChhH
Q 005990 292 RIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQA-AVLVR-ENKAGK 369 (666)
Q Consensus 292 ~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a-~~~~~-~g~~~~ 369 (666)
..+...|+..|++.+|.-..+.+.+..|.+...+.+.| .++.- ----++
T Consensus 372 -----------------------------~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 372 -----------------------------RGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred -----------------------------HHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHH
Confidence 22267789999999999999999999999988877775 44443 334678
Q ss_pred HHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 005990 370 AEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWW 449 (666)
Q Consensus 370 A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~ 449 (666)
|.+++++.+...|.... +...+|.++...|.+..++.++++.+...++..+...||.++...+.+.+|.+.|..|+...
T Consensus 423 AKkf~ek~L~~~P~Y~~-AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 423 AKKFAEKSLKINPIYTP-AVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHhhhccCCccHH-HHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99999999999999765 88899999999999999999999999999988899999999999999999999999999887
Q ss_pred HHh
Q 005990 450 LNA 452 (666)
Q Consensus 450 ~~~ 452 (666)
|++
T Consensus 502 P~~ 504 (564)
T KOG1174|consen 502 PKS 504 (564)
T ss_pred ccc
Confidence 554
No 49
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.84 E-value=4.5e-17 Score=164.66 Aligned_cols=430 Identities=15% Similarity=0.073 Sum_probs=305.9
Q ss_pred hhhccHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc---chhhhHHHHHHHHHhCCHH
Q 005990 31 IERSEFEQAVKVADQVLST-----NPSDEDAMRCKVVALIKADNIDDALSTIQSSQKF---TFDFNYLKAYCLYRQNRLD 102 (666)
Q Consensus 31 ~~~~~~~~A~~~~~~~l~~-----~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~a~~~~~~g~~~ 102 (666)
+-.++.++++-..--.+.. ..+++..|-.+..++...|+|+.+.+.|+++... ....|+..+.++...|.-.
T Consensus 295 i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s 374 (799)
T KOG4162|consen 295 IPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDS 374 (799)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccch
Confidence 4556666666555443332 3467889999999999999999999999999554 3468889999999999999
Q ss_pred HHHHHHHh------cCCChhHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCChhH-------HHHHHHHHH----cC---
Q 005990 103 EALESLKI------QENNPATMLLKSQIL-YRSGEMDACVEFYQKLQKSKIDSLE-------INFVAGLIS----AG--- 161 (666)
Q Consensus 103 ~A~~~l~~------~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~~~-------~~l~~~~~~----~g--- 161 (666)
.|+.+++. .|.+...+.+.+.+| -+.+.+++++.+..+++........ ..+|.+|.. ..
T Consensus 375 ~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~s 454 (799)
T KOG4162|consen 375 KAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKS 454 (799)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChH
Confidence 99999987 255666666666655 5578999999999999884321111 333444432 11
Q ss_pred ----ChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHH
Q 005990 162 ----RASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLA 237 (666)
Q Consensus 162 ----~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 237 (666)
...+++..++++++.+|.|+.+.|+++.-|...++.+.|....++++++++. + ...+|..+|
T Consensus 455 eR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~---------~-----~~~~whLLA 520 (799)
T KOG4162|consen 455 ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRG---------D-----SAKAWHLLA 520 (799)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC---------c-----cHHHHHHHH
Confidence 2456888999999999999999999999999999999999999999999643 1 236999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHH
Q 005990 238 YVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQRE 317 (666)
Q Consensus 238 ~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~ 317 (666)
.++..++++.+|+.+.+.++...+.|..........-..+++.....+....+-.+.+.-....+.. . ..
T Consensus 521 LvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~-------~---~g 590 (799)
T KOG4162|consen 521 LVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTL-------D---EG 590 (799)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhh-------h---hh
Confidence 9999999999999999999998887654333322222223332222222222211111100000000 0 00
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhc---------------------cccCCCCc-----hHHHHHHHHHHhhCChhHHH
Q 005990 318 AIYANRVLLLLHANKMDQARELVAAL---------------------PDMFPDSV-----MPLLLQAAVLVRENKAGKAE 371 (666)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~A~~~~~~~---------------------~~~~p~~~-----~~~~~~a~~~~~~g~~~~A~ 371 (666)
......+.+.+...+..+|.+....+ ....|++. ..|+..+.++...+..++|.
T Consensus 591 ~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~ 670 (799)
T KOG4162|consen 591 KLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEAR 670 (799)
T ss_pred hhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 00000011111112222222111111 01122221 35567778888899999999
Q ss_pred HHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHH--HHHHHHHH
Q 005990 372 ELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAA--VLDSAIKW 448 (666)
Q Consensus 372 ~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~--~l~~a~~~ 448 (666)
.++.++-..+|.... .++..+.++...|++.+|.+.|..++.++| ++.....+|.++.+.|+..-|.. ++..+++.
T Consensus 671 ~CL~Ea~~~~~l~~~-~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 671 SCLLEASKIDPLSAS-VYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL 749 (799)
T ss_pred HHHHHHHhcchhhHH-HHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 999999999998655 889999999999999999999999999999 88888999999999999888887 99999988
Q ss_pred HHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC
Q 005990 449 WLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 449 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
.|.+. .+|..+|.++...|+.++|.++|..++++.+.
T Consensus 750 dp~n~-------eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 750 DPLNH-------EAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred CCCCH-------HHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 65443 39999999999999999999999999998876
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.83 E-value=2.1e-17 Score=169.90 Aligned_cols=302 Identities=13% Similarity=0.075 Sum_probs=232.6
Q ss_pred hhHHHHHHHHHhCCHHHHHHHHHhcC----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChh-H--HHHHHHHHH
Q 005990 87 FNYLKAYCLYRQNRLDEALESLKIQE----NNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSL-E--INFVAGLIS 159 (666)
Q Consensus 87 ~~~~~a~~~~~~g~~~~A~~~l~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~--~~l~~~~~~ 159 (666)
-.+..|...+..|+++.|.+.+.+.+ +....+.+.|+++...|+++.|..+|.++.+..|++. . ...+.++..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 34566777888999999999888743 3455667889999999999999999999988888764 3 556888999
Q ss_pred cCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHH
Q 005990 160 AGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYV 239 (666)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 239 (666)
.|+++.|+..++.+.+..|++..++..++.++...|++++|++.+.+..+..... +.+. ..+......-
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-------~~~~----~~l~~~a~~~ 234 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-------DEEF----ADLEQKAEIG 234 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-------HHHH----HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998874211 2211 1111121212
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHH
Q 005990 240 QQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAI 319 (666)
Q Consensus 240 ~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~ 319 (666)
+...+..+++.+.+..+....|... .....+
T Consensus 235 ~l~~~~~~~~~~~L~~~~~~~p~~~-------------------------------------------------~~~~~l 265 (409)
T TIGR00540 235 LLDEAMADEGIDGLLNWWKNQPRHR-------------------------------------------------RHNIAL 265 (409)
T ss_pred HHHHHHHhcCHHHHHHHHHHCCHHH-------------------------------------------------hCCHHH
Confidence 2233344444445555554444210 001123
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhccccCCCCchHH--HHHHHHHHhhCChhHHHHHHHHHHhhCCChh--HHHHHHHHHH
Q 005990 320 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPL--LLQAAVLVRENKAGKAEELLGQFAEKLPDKS--KIILLARAQV 395 (666)
Q Consensus 320 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~--~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~--~~~~~~la~~ 395 (666)
....+..+...|++++|...++++++.+|++.... ..........++...++..++++++.+|+++ . +...+|.+
T Consensus 266 ~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~-ll~sLg~l 344 (409)
T TIGR00540 266 KIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCC-INRALGQL 344 (409)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHH-HHHHHHHH
Confidence 35558889999999999999999999999987532 3333444556888999999999999999977 4 78899999
Q ss_pred HHHcCChhHHHHHHh--cCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 005990 396 AAAANHPFIAAESLA--KIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWW 449 (666)
Q Consensus 396 ~~~~g~~~~A~~~l~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~ 449 (666)
+.+.|++++|.++|+ .+.+..|++.....++.++.+.|+.++|..++++++...
T Consensus 345 ~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 345 LMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999999999999 577788888878899999999999999999999987653
No 51
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1e-16 Score=147.24 Aligned_cols=409 Identities=11% Similarity=0.030 Sum_probs=287.6
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHH
Q 005990 25 TSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEA 104 (666)
Q Consensus 25 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 104 (666)
-.+.+++..|+|++|+..|.-+.+.+--+.+.+..++.|++-+|.|.+|..+..++... |-..-.+-.+-.++|+-++-
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHH
Confidence 35777899999999999999998876667889999999999999999999999998443 22222333344567777766
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHH
Q 005990 105 LESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFE 182 (666)
Q Consensus 105 ~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 182 (666)
..+-+...+...-...+|.++|..-+|++|+++|.+++..+|+... ++++.+|.+..-++-+.+++.-.+...|++.-
T Consensus 141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence 6665555555667788999999999999999999999998888766 88999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------hhhhccC----CC---CChhhHhhhhhhHHHHHHHHHHHcC
Q 005990 183 LAYNTACSLAEMNKYTEAEQLLLTARRI-----------GQETLTD----DN---FAEDDIEIELAPIAVQLAYVQQLLG 244 (666)
Q Consensus 183 ~~~~la~~~~~~g~~~~A~~~l~~a~~~-----------~~~~~~~----~~---~~~~~~~~~~~~~~~~la~~~~~~g 244 (666)
+....++.+++.=+-..|+.-......- +...+.- ++ +-|.-+ ..+..+.++|+..|..+|
T Consensus 221 A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~-~~IPEARlNL~iYyL~q~ 299 (557)
T KOG3785|consen 221 AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLM-KHIPEARLNLIIYYLNQN 299 (557)
T ss_pred HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHH-hhChHhhhhheeeecccc
Confidence 9999999888754433343333332221 1111000 00 001111 223467889999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHH
Q 005990 245 NTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRV 324 (666)
Q Consensus 245 ~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a 324 (666)
+..+|..+.+.. +|..+..+.+-......++.....-+-++..++....-..+. .........|.. +
T Consensus 300 dVqeA~~L~Kdl---~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa----~ecDTIpGRQsm------A 366 (557)
T KOG3785|consen 300 DVQEAISLCKDL---DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA----LECDTIPGRQSM------A 366 (557)
T ss_pred cHHHHHHHHhhc---CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc----cccccccchHHH------H
Confidence 999999888755 676655444333333333332222233333322211100000 001112222322 6
Q ss_pred HHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhH
Q 005990 325 LLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFI 404 (666)
Q Consensus 325 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~ 404 (666)
..++-..+|++.+.++..+...+-++....+.+|++.+..|++.+|.++|-.+....-.+.......+|.+|+..+.+.-
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 66777789999999999998888888888999999999999999999999876544333445467789999999999999
Q ss_pred HHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 005990 405 AAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKW 448 (666)
Q Consensus 405 A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~ 448 (666)
|..++-+.-.-.....++..++..++..+.+--|.+.|+..-..
T Consensus 447 AW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 447 AWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 99999775332224445677788888888888888777765443
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.82 E-value=2.6e-17 Score=168.13 Aligned_cols=298 Identities=11% Similarity=0.036 Sum_probs=225.3
Q ss_pred hHHHHHHHHHhCCHHHHHHHHHhcCC---ChhHHHHH-HHHHHHcCCHHHHHHHHHHHHhhCCChhH---HHHHHHHHHc
Q 005990 88 NYLKAYCLYRQNRLDEALESLKIQEN---NPATMLLK-SQILYRSGEMDACVEFYQKLQKSKIDSLE---INFVAGLISA 160 (666)
Q Consensus 88 ~~~~a~~~~~~g~~~~A~~~l~~~~~---~~~~~~~l-a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~l~~~~~~~ 160 (666)
.+..|...+..|+++.|.+.+...++ ++.+++++ +.+..+.|+++.|..+|.++.+..|++.. ...+.++...
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 45666777778999999999988655 35565555 66669999999999999999998888754 4557889999
Q ss_pred CChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHH
Q 005990 161 GRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQ 240 (666)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 240 (666)
|++++|+..++++.+..|++..++..++.+|...|++++|+.++.+..+..... +++...-...++..+....
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-------~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-------EEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998876321 2222100001222221111
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHH
Q 005990 241 QLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIY 320 (666)
Q Consensus 241 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~ 320 (666)
....+.+...++++......|+ ...+.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~-----------------------------------------------------~~~~~ 266 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRH-----------------------------------------------------QVALQ 266 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhC-----------------------------------------------------CHHHH
Confidence 1111112222222211111111 12233
Q ss_pred HHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcC
Q 005990 321 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN 400 (666)
Q Consensus 321 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g 400 (666)
...+..+...|+.++|...+++..+..+ +.......+. ...++.++++..++..++.+|++.. .++.+|.++...+
T Consensus 267 ~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~-l~l~lgrl~~~~~ 342 (398)
T PRK10747 267 VAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPL-LWSTLGQLLMKHG 342 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHCC
Confidence 4558889999999999999999998544 5444444444 3459999999999999999999765 8999999999999
Q ss_pred ChhHHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 005990 401 HPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWW 449 (666)
Q Consensus 401 ~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~ 449 (666)
++++|.+.|+++++..|+...+..++.++...|+.++|..+|++++...
T Consensus 343 ~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 343 EWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999987777899999999999999999999988754
No 53
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.82 E-value=9.3e-17 Score=162.38 Aligned_cols=417 Identities=13% Similarity=0.059 Sum_probs=312.9
Q ss_pred HHHHHHHHHH-HhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccc--h----hhhHHHH
Q 005990 20 IEDLFTSLNR-HIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFT--F----DFNYLKA 92 (666)
Q Consensus 20 ~~~l~~~~~~-~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~----~~~~~~a 92 (666)
..++|..... +...|+|+.+.+.|++++...-...+.|+.++.+|...|.-..|+.+++...... + .+.+.-.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 3445544443 4667999999999999998887888999999999999999999999999985544 2 2334555
Q ss_pred HHHHHhCCHHHHHHHHHhcCC---------ChhHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCCChhH--
Q 005990 93 YCLYRQNRLDEALESLKIQEN---------NPATMLLKSQILYRS-----------GEMDACVEFYQKLQKSKIDSLE-- 150 (666)
Q Consensus 93 ~~~~~~g~~~~A~~~l~~~~~---------~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~-- 150 (666)
.|+-+.+.+++++++..+..+ .+..++.+|.+|-.+ -...+++..++++++.+|.|+.
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 677789999999888776322 467777787777432 2356889999999999998888
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhc-CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVK-ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIEL 229 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 229 (666)
++++.-|...++.+.|.....+++.. ..++..+|..+|.++...+++.+|+.+.+.++.-.+.++
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~-------------- 547 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH-------------- 547 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh--------------
Confidence 88888899999999999999999998 567899999999999999999999999999998875432
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHH--------Hhhhh-hccCCCChhHHHHHhHHHhhhhhhh
Q 005990 230 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVA--------VNNLV-ALKGPKDVNDSLKKLDRIKEKDMQN 300 (666)
Q Consensus 230 ~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~--------~~~l~-~~~~~~~~~~a~~~l~~~~~~~~~~ 300 (666)
........+-...|+.++|+......+..-.....+.... ...+. ......+....-+.+..++......
T Consensus 548 -~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 548 -VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred -hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence 2333444455567888888888877765432111111111 00000 1111222222233333333211101
Q ss_pred hhhhHHhh-------cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHH
Q 005990 301 FQLARVLD-------LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEEL 373 (666)
Q Consensus 301 ~~~~~~l~-------~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 373 (666)
......+. ..-...-...++...+.++...++.++|..++.++...+|.....++..|..+...|++.+|...
T Consensus 627 ~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~a 706 (799)
T KOG4162|consen 627 AGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEA 706 (799)
T ss_pred cccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence 00000000 00001111235566678889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHH--HHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 005990 374 LGQFAEKLPDKSKIILLARAQVAAAANHPFIAAE--SLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWL 450 (666)
Q Consensus 374 l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~--~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~ 450 (666)
|..++..+|++.. ....+|.++...|+..-|.. ++..++.++| ++..|+.+|.++...|+.+.|.+.|..++++.+
T Consensus 707 f~~Al~ldP~hv~-s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 707 FLVALALDPDHVP-SMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHhcCCCCcH-HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 9999999999876 88999999999999888888 9999999999 999999999999999999999999999999865
Q ss_pred Hh
Q 005990 451 NA 452 (666)
Q Consensus 451 ~~ 452 (666)
..
T Consensus 786 S~ 787 (799)
T KOG4162|consen 786 SN 787 (799)
T ss_pred CC
Confidence 44
No 54
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.82 E-value=7.6e-18 Score=153.97 Aligned_cols=317 Identities=13% Similarity=0.068 Sum_probs=258.9
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSL 191 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 191 (666)
+..-.+.+|.-++..|++.+|+..|..++..+|+++. +..+.+|..+|+..-|+.-|.+++++.|+...+....|.++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 4556678899999999999999999999999999988 78889999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhh-----hHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhH
Q 005990 192 AEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELA-----PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESS 266 (666)
Q Consensus 192 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~ 266 (666)
+.+|++++|+.-|..++...+..-. ..+.+..++ .........+.-.|+...|+.+...++++.|.+..+
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l 191 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASL 191 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence 9999999999999999998864211 111111111 233444555667889999999999999988876422
Q ss_pred HHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhcccc
Q 005990 267 FAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM 346 (666)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 346 (666)
. ...+.+|...|....|+.-+..+.+.
T Consensus 192 ~-----------------------------------------------------~~Rakc~i~~~e~k~AI~Dlk~askL 218 (504)
T KOG0624|consen 192 R-----------------------------------------------------QARAKCYIAEGEPKKAIHDLKQASKL 218 (504)
T ss_pred H-----------------------------------------------------HHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 1 22378899999999999999999999
Q ss_pred CCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHH-----------HHHHHHHHHHHcCChhHHHHHHhcCcCC
Q 005990 347 FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI-----------ILLARAQVAAAANHPFIAAESLAKIPDI 415 (666)
Q Consensus 347 ~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-----------~~~~la~~~~~~g~~~~A~~~l~~~~~~ 415 (666)
..++...++..+.+++..|+.+.++...+.+++.+|++..- -.+.-+.-.+..++|.++++..++++..
T Consensus 219 s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ 298 (504)
T KOG0624|consen 219 SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN 298 (504)
T ss_pred cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999985320 1122233456789999999999999988
Q ss_pred CCC-hhH----HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhc
Q 005990 416 QHM-PAT----VATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 490 (666)
Q Consensus 416 ~~~-~~~----~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 490 (666)
.|. +.+ ...+..++...|++.+|+....+++...|++. .++...+..|+....|+.|+..|+++.+.+
T Consensus 299 ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv-------~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 299 EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDV-------QVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHH-------HHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 883 333 45677888889999999999999988765433 378888999999999999999999999999
Q ss_pred CChHH
Q 005990 491 GSIEA 495 (666)
Q Consensus 491 p~~~~ 495 (666)
+++..
T Consensus 372 ~sn~~ 376 (504)
T KOG0624|consen 372 ESNTR 376 (504)
T ss_pred cccHH
Confidence 88443
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=1.5e-19 Score=176.63 Aligned_cols=256 Identities=22% Similarity=0.234 Sum_probs=111.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHh----c--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcC
Q 005990 90 LKAYCLYRQNRLDEALESLKI----Q--ENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAG 161 (666)
Q Consensus 90 ~~a~~~~~~g~~~~A~~~l~~----~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g 161 (666)
.+|.++++.|++++|++++.. . +++...|..+|.++...+++++|+..|++++..++.+.. ..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 445566666666666666632 2 457889999999999999999999999999988777555 455555 6889
Q ss_pred ChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHH
Q 005990 162 RASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQ 241 (666)
Q Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 241 (666)
++++|+.+++...+..+ ++..+...+.++...++++++..+++++...... +. ....++.+|.++.
T Consensus 92 ~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~--------~~-----~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAA--------PD-----SARFWLALAEIYE 157 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T-----------T------HHHHHHHHHHHH
T ss_pred ccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCC--------CC-----CHHHHHHHHHHHH
Confidence 99999999988876554 4567777888899999999999999998764421 11 1258899999999
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHH
Q 005990 242 LLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYA 321 (666)
Q Consensus 242 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~ 321 (666)
..|+.++|+..|+++++.+|++..+. .
T Consensus 158 ~~G~~~~A~~~~~~al~~~P~~~~~~-----------------------------------------------------~ 184 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALELDPDDPDAR-----------------------------------------------------N 184 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH-TT-HHHH-----------------------------------------------------H
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHH-----------------------------------------------------H
Confidence 99999999999999999999875221 1
Q ss_pred HHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCC
Q 005990 322 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANH 401 (666)
Q Consensus 322 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~ 401 (666)
.++.+++..|+++++.+.+.......|+++..+..+|.++...|++++|+.+|++++..+|+++. ++..+|.++...|+
T Consensus 185 ~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~-~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 185 ALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL-WLLAYADALEQAGR 263 (280)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH-HHHHHHHHHT----
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc-cccccccccccccc
Confidence 22566778888999888888888877888888889999999999999999999999999998766 88899999999999
Q ss_pred hhHHHHHHhcCcC
Q 005990 402 PFIAAESLAKIPD 414 (666)
Q Consensus 402 ~~~A~~~l~~~~~ 414 (666)
.++|..++.++..
T Consensus 264 ~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 264 KDEALRLRRQALR 276 (280)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 9999999988754
No 56
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=4e-20 Score=180.71 Aligned_cols=260 Identities=18% Similarity=0.106 Sum_probs=110.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhh-hc-CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLR-VK-ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIE 228 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 228 (666)
+.++.++...|++++|++++.+.. .. +|++.+.|..+|.+....++++.|+..|++++...+...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~------------- 78 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP------------- 78 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------
Confidence 556777777778888887775443 33 467777888888888888888888888888887764321
Q ss_pred hhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhh
Q 005990 229 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD 308 (666)
Q Consensus 229 ~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~ 308 (666)
..+..++.+ ...+++++|+.++....+..++..
T Consensus 79 --~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~-------------------------------------------- 111 (280)
T PF13429_consen 79 --QDYERLIQL-LQDGDPEEALKLAEKAYERDGDPR-------------------------------------------- 111 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --ccccccccc-cccccccccccccccccccccccc--------------------------------------------
Confidence 234455555 577888888888777665432110
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhcccc--CCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhH
Q 005990 309 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM--FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK 386 (666)
Q Consensus 309 ~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 386 (666)
.....+.++...++++++..+++.+... .+++...++.+|.++.+.|++++|+..|+++++.+|++..
T Consensus 112 ----------~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~ 181 (280)
T PF13429_consen 112 ----------YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD 181 (280)
T ss_dssp ----------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH
T ss_pred ----------hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 0011145567788899988888886543 3567788889999999999999999999999999999765
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 005990 387 IILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQE 465 (666)
Q Consensus 387 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 465 (666)
+...++.+++..|+++++.+++.......| ++.++..++.+|...|++++|+.+|++++...|+++. ++..
T Consensus 182 -~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~-------~~~~ 253 (280)
T PF13429_consen 182 -ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL-------WLLA 253 (280)
T ss_dssp -HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH-------HHHH
T ss_pred -HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc-------cccc
Confidence 788889999999999998888888776656 8888899999999999999999999999887654433 7778
Q ss_pred HHHHHHhCCChhhHHHHHHHHHH
Q 005990 466 AASFKLRHGREEDASHLFEELVK 488 (666)
Q Consensus 466 l~~~~~~~g~~~~A~~~~~~~l~ 488 (666)
+|.++...|+.++|..++.+++.
T Consensus 254 ~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 254 YADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHT-----------------
T ss_pred ccccccccccccccccccccccc
Confidence 89999999999999999998875
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.81 E-value=3.7e-17 Score=168.01 Aligned_cols=301 Identities=14% Similarity=0.068 Sum_probs=230.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChH-HHHHHHHHHHHH
Q 005990 117 TMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSF-ELAYNTACSLAE 193 (666)
Q Consensus 117 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~ 193 (666)
.....|.+.+..|+++.|.+.+.++.+..|+... ...+.+....|+++.|...|.++.+..|++. .+....+.+++.
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 4467788899999999999999999888776554 5557778889999999999999988888774 466667999999
Q ss_pred hcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhh
Q 005990 194 MNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNN 273 (666)
Q Consensus 194 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~ 273 (666)
.|+++.|+..++.+.+..|++ ..++..++.++...|++++|...+....+....+......+
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~---------------~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l--- 227 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRH---------------KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADL--- 227 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH---
Confidence 999999999999999998543 25888999999999999999999999997754332111000
Q ss_pred hhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccC----CC
Q 005990 274 LVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF----PD 349 (666)
Q Consensus 274 l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----p~ 349 (666)
... ...-++..+..+++...+..+.... ++
T Consensus 228 --------------~~~--------------------------------a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~ 261 (409)
T TIGR00540 228 --------------EQK--------------------------------AEIGLLDEAMADEGIDGLLNWWKNQPRHRRH 261 (409)
T ss_pred --------------HHH--------------------------------HHHHHHHHHHHhcCHHHHHHHHHHCCHHHhC
Confidence 000 0001112222222333444444444 46
Q ss_pred CchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHH-HHHHHHHHHHcCChhHHHHHHhcCcCCCC-Ch--hHHHHH
Q 005990 350 SVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII-LLARAQVAAAANHPFIAAESLAKIPDIQH-MP--ATVATL 425 (666)
Q Consensus 350 ~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~-~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~--~~~~~l 425 (666)
++.+++..+..+...|++++|+..++++++..|++.... ........+..++.+.+++.+++++...| +| .+...+
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sL 341 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRAL 341 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 889999999999999999999999999999999865321 12233344556889999999999999999 88 888999
Q ss_pred HHHHHHcCChhHHHHHHHH--HHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHh
Q 005990 426 VALKERAGDIDGAAAVLDS--AIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT 489 (666)
Q Consensus 426 ~~~~~~~g~~~~A~~~l~~--a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 489 (666)
|+++.+.|++++|.++|++ +++..| ++. .+.++|.++.+.|+.++|..+|++++..
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~~p-----~~~---~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKEQL-----DAN---DLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhcCC-----CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999995 544432 222 3448899999999999999999998753
No 58
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2e-16 Score=154.11 Aligned_cols=429 Identities=11% Similarity=0.036 Sum_probs=269.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhccchh---hhHHHHHHHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcC
Q 005990 57 MRCKVVALIKADNIDDALSTIQSSQKFTFD---FNYLKAYCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSG 129 (666)
Q Consensus 57 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~a~~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g 129 (666)
....|.+.+..|+|+.|+.+|..++.++|. ++-+..-||..+|+|++|++--.+ .|..+..|..+|..+.-+|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 456788999999999999999999888764 344888999999999998876554 7889999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCC------------------------hhHHHHHHHHhhhcCCChHHH
Q 005990 130 EMDACVEFYQKLQKSKIDSLE--INFVAGLISAGR------------------------ASEVQKTLDSLRVKATSSFEL 183 (666)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~------------------------~~~A~~~~~~~~~~~~~~~~~ 183 (666)
+|++|+..|.+.|+.+|++.. .+++.++...-. .+.+...+...+..+|.+...
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999999999999999877 555555421100 001111111112222222211
Q ss_pred HHHHHHHHHHhcCHHHHH--HHHHHHHHh-----hhhhc------cCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHH
Q 005990 184 AYNTACSLAEMNKYTEAE--QLLLTARRI-----GQETL------TDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAF 250 (666)
Q Consensus 184 ~~~la~~~~~~g~~~~A~--~~l~~a~~~-----~~~~~------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~ 250 (666)
+.+--.+....|.....- ......... .|... ...+.+.+......+.....+|...+...++..|+
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 111000000000000000 000000000 00000 00122333333444567788999999999999999
Q ss_pred HHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHc
Q 005990 251 GAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHA 330 (666)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~ 330 (666)
+.|..++.++ .+..........++... .+..+....+..++.+..... ..++ ........+..+...
T Consensus 245 q~y~~a~el~-~~it~~~n~aA~~~e~~---~~~~c~~~c~~a~E~gre~ra-----d~kl----Iak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 245 QHYAKALELA-TDITYLNNIAAVYLERG---KYAECIELCEKAVEVGRELRA-----DYKL----IAKALARLGNAYTKR 311 (539)
T ss_pred HHHHHHHhHh-hhhHHHHHHHHHHHhcc---HHHHhhcchHHHHHHhHHHHH-----HHHH----HHHHHHHhhhhhhhH
Confidence 9999999888 66544433322222211 111122222212222110000 0000 111112235567778
Q ss_pred CChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHh
Q 005990 331 NKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLA 410 (666)
Q Consensus 331 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~ 410 (666)
++++.|+.+|.+++..+-. ..++.+....++++...+...-.+|+-.. -....+..++..|+|..|+..|.
T Consensus 312 ~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~-e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAE-EEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHH-HHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999987654433 34555666777888887777777777433 34455888899999999999999
Q ss_pred cCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHh
Q 005990 411 KIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT 489 (666)
Q Consensus 411 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 489 (666)
+++..+| ++.++...+.+|..+|.+..|+...+.++++.|+. ...|.+-|.++..+.+|+.|.+.|+++++.
T Consensus 383 eAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~-------~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 383 EAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF-------IKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999 88888999999999999999999999998875433 336667788888888999999999999999
Q ss_pred cCC-hHHHHHHHHhhc--cCChhhHHHH
Q 005990 490 HGS-IEALVGLVTTSA--HVDVDKAESY 514 (666)
Q Consensus 490 ~p~-~~~l~~l~~~~~--~~d~~~a~~~ 514 (666)
+|+ .+.+.++..++. +.+....+..
T Consensus 456 dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred CchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 998 444455555554 3444444433
No 59
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.3e-14 Score=138.53 Aligned_cols=435 Identities=14% Similarity=0.117 Sum_probs=317.9
Q ss_pred HHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch---hhhHHHHHHHHHhCCHHH
Q 005990 27 LNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF---DFNYLKAYCLYRQNRLDE 103 (666)
Q Consensus 27 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~a~~~~~~g~~~~ 103 (666)
+.--.+++++..|..+++++|..+-.+...|...+.+-++......|..+++++...-| .+++...++--.+|+..-
T Consensus 80 aqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 80 AQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHH
Confidence 44445678888999999999999999999999999999999999999999999966544 567777777788999999
Q ss_pred HHHHHHh---cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-HHHHHHHHHcCChhHHHHHHHHhhhcCCC
Q 005990 104 ALESLKI---QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-INFVAGLISAGRASEVQKTLDSLRVKATS 179 (666)
Q Consensus 104 A~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 179 (666)
|.++|+. -..+..+|+.....-.+-...+.|..+|++.+-.+|+-.. +..+..-...|+..-|..+|+.++..-.+
T Consensus 160 aRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 160 ARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 9999998 2336788888888889999999999999999887887666 78888888899999999999999875443
Q ss_pred hH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCCh---HHHH---
Q 005990 180 SF---ELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNT---QEAF--- 250 (666)
Q Consensus 180 ~~---~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~eA~--- 250 (666)
+. .++...|..-..+..++.|.-+|+-|+..-|..-. + .++-.+...--+-|+. ++++
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra------e-------eL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA------E-------ELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH------H-------HHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 32 23444455556677888999999988887754210 1 1222222222233332 2222
Q ss_pred --HHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHH---HHHHHHHHH
Q 005990 251 --GAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQR---EAIYANRVL 325 (666)
Q Consensus 251 --~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~---~~~~~~~a~ 325 (666)
--|+..+..+|-|-..+.......-.. + +.......+++.+..-+ .......+ .-++.|.+.
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~-g--~~~~Ire~yErAIanvp----------p~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESV-G--DKDRIRETYERAIANVP----------PASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhc-C--CHHHHHHHHHHHHccCC----------chhHHHHHHHHHHHHHHHHH
Confidence 235566666676544443222111111 1 11122333333322110 00001111 113445444
Q ss_pred H-HHHcCChHHHHHHHHhccccCCCCc----hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcC
Q 005990 326 L-LLHANKMDQARELVAALPDMFPDSV----MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN 400 (666)
Q Consensus 326 ~-~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g 400 (666)
. -+...+.+.+..+++.+++.-|... .+++..|....++.+...|.+.+-.++...|.+. +.-....+-++.+
T Consensus 374 yeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K--lFk~YIelElqL~ 451 (677)
T KOG1915|consen 374 YEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK--LFKGYIELELQLR 451 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh--HHHHHHHHHHHHh
Confidence 3 4678899999999999999888754 5678888888999999999999999999999953 4556677788899
Q ss_pred ChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhH
Q 005990 401 HPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDA 479 (666)
Q Consensus 401 ~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 479 (666)
+++....+|++.++..| +...|...+.+-..+|+.+.|..+|+-|+.... ......+|....++-...|.++.|
T Consensus 452 efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~-----ldmpellwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA-----LDMPELLWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred hHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc-----cccHHHHHHHhhhhhhhcchHHHH
Confidence 99999999999999999 888999999999999999999999999987532 112224788888899999999999
Q ss_pred HHHHHHHHHhcCChH
Q 005990 480 SHLFEELVKTHGSIE 494 (666)
Q Consensus 480 ~~~~~~~l~~~p~~~ 494 (666)
..+|+++|...+...
T Consensus 527 R~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 527 RALYERLLDRTQHVK 541 (677)
T ss_pred HHHHHHHHHhcccch
Confidence 999999999988743
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.77 E-value=1.2e-15 Score=155.88 Aligned_cols=302 Identities=11% Similarity=0.050 Sum_probs=229.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-HHH-HHHHHHcCChhHHHHHHHHhhhcCCChHH-HHHHHHHHHHH
Q 005990 117 TMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-INF-VAGLISAGRASEVQKTLDSLRVKATSSFE-LAYNTACSLAE 193 (666)
Q Consensus 117 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~ 193 (666)
..+..|.+.+..|+|+.|.+.........+.... ..+ +.+....|+++.|...|.++.+.+|++.. .....+.++..
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 3467778888899999999777765443222121 333 44447799999999999999998888753 33455899999
Q ss_pred hcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhh
Q 005990 194 MNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNN 273 (666)
Q Consensus 194 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~ 273 (666)
.|++++|+..++++.+..|++. .++..++.+|...|++++|+.++..+.+....+....
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~---------------~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~------ 224 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHP---------------EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHR------ 224 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHH------
Confidence 9999999999999999996532 5888999999999999999999999987766543111
Q ss_pred hhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchH
Q 005990 274 LVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMP 353 (666)
Q Consensus 274 l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 353 (666)
..+... .+..+..........+....+++.+....|+++.+
T Consensus 225 --------------~~l~~~-------------------------a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~ 265 (398)
T PRK10747 225 --------------AMLEQQ-------------------------AWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVAL 265 (398)
T ss_pred --------------HHHHHH-------------------------HHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHH
Confidence 111000 00000111122334556667777777778889999
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHc
Q 005990 354 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA 432 (666)
Q Consensus 354 ~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~ 432 (666)
....+..+...|+.++|...+++.++..++ +. +....+ .+..++++++++.+++.++.+| ++.+...+|.++...
T Consensus 266 ~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-~~-l~~l~~--~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 266 QVAMAEHLIECDDHDTAQQIILDGLKRQYD-ER-LVLLIP--RLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HH-HHHHHh--hccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999996655 32 333333 3355999999999999999999 888999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhc
Q 005990 433 GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 490 (666)
Q Consensus 433 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 490 (666)
+++++|.+.|+++++..|+.. .+..++.++.+.|+.++|..+|++.+..-
T Consensus 342 ~~~~~A~~~le~al~~~P~~~--------~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 342 GEWQEASLAFRAALKQRPDAY--------DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999998753321 34478999999999999999999998653
No 61
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.2e-16 Score=150.09 Aligned_cols=297 Identities=15% Similarity=0.135 Sum_probs=238.0
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch---hhhHHHHHHHH
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF---DFNYLKAYCLY 96 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~a~~~~ 96 (666)
.+.....++.++...+|.+|+..+..+++..|++...|...+.+++..|+|++|+-..++..++.+ ......+.|+.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 456788899999999999999999999999999999999999999999999999999988866654 45568888999
Q ss_pred HhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChh---H--HHHHHHHHHcCChhHHHHHHH
Q 005990 97 RQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSL---E--INFVAGLISAGRASEVQKTLD 171 (666)
Q Consensus 97 ~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~--~~l~~~~~~~g~~~~A~~~~~ 171 (666)
.++...+|...++. ..++ ....|+..++.++..+...+ . ..-+.++...|++++|+..--
T Consensus 129 a~~~~i~A~~~~~~----~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKS----KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred hhHHHHHHHHHhhh----hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 99998888888762 1111 23345555555544322212 2 556777888999999999999
Q ss_pred HhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHH
Q 005990 172 SLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFG 251 (666)
Q Consensus 172 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~ 251 (666)
.++++++.+.++++..|.++...++.+.|+..|++++.++|+....-. --..+.....+-.-|.-.+..|++.+|.+
T Consensus 194 ~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~---~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 194 DILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKS---ASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred HHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHh---HhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 999999999999999999999999999999999999999976421110 00112333567777888899999999999
Q ss_pred HHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcC
Q 005990 252 AYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHAN 331 (666)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~ 331 (666)
.|..+|.++|++.... ..++.|++.+....|
T Consensus 271 ~Yteal~idP~n~~~n-------------------------------------------------aklY~nra~v~~rLg 301 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTN-------------------------------------------------AKLYGNRALVNIRLG 301 (486)
T ss_pred HHHHhhcCCccccchh-------------------------------------------------HHHHHHhHhhhcccC
Confidence 9999999999763110 124577788899999
Q ss_pred ChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCC
Q 005990 332 KMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD 383 (666)
Q Consensus 332 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~ 383 (666)
+..+|+..++.++..++....+++..|.++...++|++|++.|+++++...+
T Consensus 302 rl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 302 RLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred CchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999888889999999999999999999999999887655
No 62
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=2.1e-15 Score=135.66 Aligned_cols=187 Identities=16% Similarity=0.198 Sum_probs=147.0
Q ss_pred HHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch---hhhHHHHHHHHHhCCHHH
Q 005990 27 LNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF---DFNYLKAYCLYRQNRLDE 103 (666)
Q Consensus 27 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~a~~~~~~g~~~~ 103 (666)
+..++...+|++|++++..-.+.+|.+...+..+|.||+...+|..|...|++...+.| ...+..+..+|+.+.+.+
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence 34457778999999999999999999999999999999999999999999999866654 455677888899999999
Q ss_pred HHHHHHhcCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCC
Q 005990 104 ALESLKIQENN----PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATS 179 (666)
Q Consensus 104 A~~~l~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 179 (666)
|+.++....++ ..+..+.+-+.|..+++..+..+.++.-..+..+..++.+.++++.|+++.|.+-|+.+++...-
T Consensus 97 ALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy 176 (459)
T KOG4340|consen 97 ALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY 176 (459)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence 99888875553 34556677778888888887777666432222222278888888888888888888888887777
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 180 SFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 180 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
++-+.|++|.++++.|++..|+++....++..-.
T Consensus 177 qpllAYniALaHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 177 QPLLAYNLALAHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Confidence 7778888888888888888888888877776643
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.76 E-value=1.8e-16 Score=169.06 Aligned_cols=258 Identities=10% Similarity=0.048 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHc---------CChhHHHHHHHHhhhcCCChHH
Q 005990 117 TMLLKSQILYRS---GEMDACVEFYQKLQKSKIDSLE--INFVAGLISA---------GRASEVQKTLDSLRVKATSSFE 182 (666)
Q Consensus 117 ~~~~la~~~~~~---g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~ 182 (666)
.+++.|..++.. +.+++|+.+|++++..+|++.. .+++.++... +++++|+..+++++..+|++.+
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~ 339 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ 339 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence 345556544433 3467899999999999998876 6666655432 3478899999999999999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005990 183 LAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA 262 (666)
Q Consensus 183 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~ 262 (666)
++..+|.++...|++++|+..|+++++++|+. ..+++.+|.++..+|++++|+..|++++..+|.
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~ 404 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPIS---------------ADIKYYYGWNLFMAGQLEEALQTINECLKLDPT 404 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999998542 257888999999999999999999999999986
Q ss_pred CHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHh
Q 005990 263 DESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAA 342 (666)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~ 342 (666)
+.... +..+.+++..|++++|+..+++
T Consensus 405 ~~~~~-----------------------------------------------------~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 405 RAAAG-----------------------------------------------------ITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred ChhhH-----------------------------------------------------HHHHHHHHhccCHHHHHHHHHH
Confidence 63110 0113345567889999999988
Q ss_pred ccccC-CCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-Chh
Q 005990 343 LPDMF-PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPA 420 (666)
Q Consensus 343 ~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~ 420 (666)
++... |+++..+..+|.++...|++++|+..+.++....|.... +...++..|+..|+ +|...++.+++... .+.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLI-AVNLLYAEYCQNSE--RALPTIREFLESEQRIDN 508 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHH-HHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhc
Confidence 87764 677778888888998999999999999888877777544 67777878887774 77777776654332 222
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 005990 421 TVATLVALKERAGDIDGAAAVLDSAI 446 (666)
Q Consensus 421 ~~~~l~~~~~~~g~~~~A~~~l~~a~ 446 (666)
-...+..+|.-.|+.+.+.-+ +++.
T Consensus 509 ~~~~~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 509 NPGLLPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred CchHHHHHHHHHhhhHHHHHH-HHhh
Confidence 223366677777877766655 5543
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=2.2e-15 Score=137.23 Aligned_cols=270 Identities=16% Similarity=0.110 Sum_probs=226.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCC----hHHHHHHHHHHH
Q 005990 118 MLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATS----SFELAYNTACSL 191 (666)
Q Consensus 118 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~ 191 (666)
-+..|.-+.-.++.++|+..|-.+++.+|...+ ..||..+.+.|..+.|+.+.+.++....- -.-+++.+|.-|
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 355566667788899999999999999998888 88999999999999999998887764332 234788999999
Q ss_pred HHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHH
Q 005990 192 AEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAV 271 (666)
Q Consensus 192 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~ 271 (666)
+..|-++.|+..|........- -..+.-+|..+|+...+|++|++.-++..++.+.+..+.
T Consensus 118 m~aGl~DRAE~~f~~L~de~ef---------------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---- 178 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEF---------------AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---- 178 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhh---------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH----
Confidence 9999999999999988764421 114788999999999999999999999988877542110
Q ss_pred hhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCc
Q 005990 272 NNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV 351 (666)
Q Consensus 272 ~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 351 (666)
....+-.++..+....+++.|+..+.++++.+|...
T Consensus 179 --------------------------------------------IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv 214 (389)
T COG2956 179 --------------------------------------------IAQFYCELAQQALASSDVDRARELLKKALQADKKCV 214 (389)
T ss_pred --------------------------------------------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce
Confidence 011223346677888999999999999999999999
Q ss_pred hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCCChhHHHHHHHHHHH
Q 005990 352 MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKER 431 (666)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~ 431 (666)
.+.+.+|.++...|+++.|++.++.+++.+|+....+.-.+..+|...|+.++.+..+.++.+..+.+.+...++.+-..
T Consensus 215 RAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~ 294 (389)
T COG2956 215 RASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIEL 294 (389)
T ss_pred ehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999888889999999999999999999999999988877777788888877
Q ss_pred cCChhHHHHHHHHHHHHHH
Q 005990 432 AGDIDGAAAVLDSAIKWWL 450 (666)
Q Consensus 432 ~g~~~~A~~~l~~a~~~~~ 450 (666)
..-.+.|..++.+-+...|
T Consensus 295 ~~G~~~Aq~~l~~Ql~r~P 313 (389)
T COG2956 295 QEGIDAAQAYLTRQLRRKP 313 (389)
T ss_pred hhChHHHHHHHHHHHhhCC
Confidence 7778888888888777653
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.76 E-value=2.1e-16 Score=168.71 Aligned_cols=251 Identities=10% Similarity=0.008 Sum_probs=203.2
Q ss_pred CChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhc---------CHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhh
Q 005990 161 GRASEVQKTLDSLRVKATSSFELAYNTACSLAEMN---------KYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAP 231 (666)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 231 (666)
+.+++|+..|++++..+|++..++..+|.+|...+ ++++|+..++++++++|.. ..
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~---------------~~ 339 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN---------------PQ 339 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC---------------HH
Confidence 44679999999999999999999999999887543 4899999999999999542 25
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCC
Q 005990 232 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL 311 (666)
Q Consensus 232 ~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~ 311 (666)
++..+|.++...|++++|+..|++++..+|++...
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a--------------------------------------------- 374 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADI--------------------------------------------- 374 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---------------------------------------------
Confidence 88999999999999999999999999999977521
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhC-CChhHHHHH
Q 005990 312 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL-PDKSKIILL 390 (666)
Q Consensus 312 ~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~-p~~~~~~~~ 390 (666)
+++++.++...|++++|+..+++++..+|.+....+..+.+++..|++++|+..+++++... |++. .++.
T Consensus 375 --------~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~-~~~~ 445 (553)
T PRK12370 375 --------KYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNP-ILLS 445 (553)
T ss_pred --------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCH-HHHH
Confidence 13348888999999999999999999999988776667777888999999999999999876 5544 4788
Q ss_pred HHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 005990 391 ARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASF 469 (666)
Q Consensus 391 ~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~ 469 (666)
.++.++...|++++|...+.++....| ....+..++.+|...|+ .|...++.+++....... + ......+
T Consensus 446 ~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~-~------~~~~~~~ 516 (553)
T PRK12370 446 MQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDN-N------PGLLPLV 516 (553)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhc-C------chHHHHH
Confidence 899999999999999999999877777 55567788888888884 788888887665433221 1 1124666
Q ss_pred HHhCCChhhHHHHHHHHHHhc
Q 005990 470 KLRHGREEDASHLFEELVKTH 490 (666)
Q Consensus 470 ~~~~g~~~~A~~~~~~~l~~~ 490 (666)
+--.|+.+.|.-+ +++.+.+
T Consensus 517 ~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 517 LVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHhhhHHHHHH-HHhhccc
Confidence 6777888777766 6666544
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=5.8e-17 Score=147.32 Aligned_cols=276 Identities=16% Similarity=0.109 Sum_probs=204.8
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC---CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTN---PS-------DEDAMRCKVVALIKADNIDDALSTIQSSQKF- 83 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~-------~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~- 83 (666)
..|.-+.+||.-+.. ...|...|-..+...++.+ |. |..-...+|.||+++|.+.+|...|+.....
T Consensus 176 ~~p~l~kaLFey~fy--henDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~ 253 (478)
T KOG1129|consen 176 ERPTLVKALFEYLFY--HENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF 253 (478)
T ss_pred cChHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC
Confidence 344555566654433 3456666666666665542 21 2333356788888999888888888887443
Q ss_pred -chhhhHHHHHHHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHH
Q 005990 84 -TFDFNYLKAYCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAG 156 (666)
Q Consensus 84 -~~~~~~~~a~~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~ 156 (666)
.++.++.++.+|.+..+...|+.++.. .|.+...+...|.++..++++++|+++|+.+++.+|.+.+ ..++.-
T Consensus 254 ~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~ 333 (478)
T KOG1129|consen 254 PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVG 333 (478)
T ss_pred CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence 356677788888888888888888776 5667888888888888888888888888888888888877 455566
Q ss_pred HHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHH
Q 005990 157 LISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQL 236 (666)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 236 (666)
|+-.++.+-|+..|++++...-.+++++.|+|.|++..++++-++..|++|+..... | .+-+.+|+++
T Consensus 334 yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~--------~----~~aaDvWYNl 401 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ--------P----GQAADVWYNL 401 (478)
T ss_pred cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC--------c----chhhhhhhcc
Confidence 777888888888888888888888888888888888888888888888888887643 1 1234688888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHH
Q 005990 237 AYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQR 316 (666)
Q Consensus 237 a~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~ 316 (666)
|.+....|++.-|...|+-++..++++. +
T Consensus 402 g~vaV~iGD~nlA~rcfrlaL~~d~~h~--------------------e------------------------------- 430 (478)
T KOG1129|consen 402 GFVAVTIGDFNLAKRCFRLALTSDAQHG--------------------E------------------------------- 430 (478)
T ss_pred ceeEEeccchHHHHHHHHHHhccCcchH--------------------H-------------------------------
Confidence 8888888888888888888887666543 1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHH
Q 005990 317 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQ 357 (666)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 357 (666)
.+.|++.+..+.|+.++|..+++.+....|+-.+..+.+
T Consensus 431 --alnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 431 --ALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred --HHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 124457777888888888888888887777765554443
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.75 E-value=4.3e-15 Score=150.42 Aligned_cols=316 Identities=16% Similarity=0.064 Sum_probs=210.5
Q ss_pred HHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh--------hCCChhH--HHHHHHHHHcCCh
Q 005990 94 CLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQK--------SKIDSLE--INFVAGLISAGRA 163 (666)
Q Consensus 94 ~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--------~~p~~~~--~~l~~~~~~~g~~ 163 (666)
.+...+.+++|....+..+..+. ...++...+...+.+..+..+...+. ..|.-.. .+++..|...|+|
T Consensus 137 ~~~~~~~l~ea~~~~e~~~~~~~-~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~ 215 (508)
T KOG1840|consen 137 IQALLLQLDEAEQGQEQAAVTPV-KDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRL 215 (508)
T ss_pred HHHHHHHhhhhhcccccccccch-hHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccH
Confidence 33445566666666655443222 33344444443333233333322221 1222222 7788888899999
Q ss_pred hHHHHHHHHhhhc--------CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHH
Q 005990 164 SEVQKTLDSLRVK--------ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQ 235 (666)
Q Consensus 164 ~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (666)
+.|+..++.++.. .+.-...+..+|.+|..+++|.+|+.+|++|+.+....++.+. +.++.++.+
T Consensus 216 e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h-------~~va~~l~n 288 (508)
T KOG1840|consen 216 EKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH-------PAVAATLNN 288 (508)
T ss_pred HHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHH
Confidence 9999999888776 5555656667999999999999999999999999876655332 567789999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHH
Q 005990 236 LAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQ 315 (666)
Q Consensus 236 la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q 315 (666)
||.+|...|+|++|..++++++.+...- + ......
T Consensus 289 La~ly~~~GKf~EA~~~~e~Al~I~~~~--------------------------~-------------------~~~~~~ 323 (508)
T KOG1840|consen 289 LAVLYYKQGKFAEAEEYCERALEIYEKL--------------------------L-------------------GASHPE 323 (508)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHh--------------------------h-------------------ccChHH
Confidence 9999999999999999999998543210 0 000111
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHH
Q 005990 316 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV 395 (666)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~ 395 (666)
-.....+.+.++...+++++|..++..+.+ ++..++...--+.......++.+
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~---------------------------i~~~~~g~~~~~~a~~~~nl~~l 376 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALK---------------------------IYLDAPGEDNVNLAKIYANLAEL 376 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHH---------------------------HHHhhccccchHHHHHHHHHHHH
Confidence 111223335555566666666555543322 11111111111233466677777
Q ss_pred HHHcCChhHHHHHHhcCcCCCC------C---hhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 005990 396 AAAANHPFIAAESLAKIPDIQH------M---PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEA 466 (666)
Q Consensus 396 ~~~~g~~~~A~~~l~~~~~~~~------~---~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l 466 (666)
|..+|++++|.+++++++.+.. + .-.+..++..|.+.+++.+|..+|..+..+.+......+.....+..|
T Consensus 377 ~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL 456 (508)
T KOG1840|consen 377 YLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNL 456 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence 7778888888777777765331 1 223678899999999999999999999999965555566778889999
Q ss_pred HHHHHhCCChhhHHHHHHHHHHh
Q 005990 467 ASFKLRHGREEDASHLFEELVKT 489 (666)
Q Consensus 467 ~~~~~~~g~~~~A~~~~~~~l~~ 489 (666)
+.+|-.+|+++.|.++.+.++..
T Consensus 457 ~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 457 AALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999998854
No 68
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=99.75 E-value=5.9e-19 Score=118.40 Aligned_cols=34 Identities=74% Similarity=1.445 Sum_probs=31.6
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCC
Q 005990 565 KRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRP 601 (666)
Q Consensus 565 k~kr~~~~~k~~~p~~~~~~pdpERwlp~~~Rs~~~~ 601 (666)
+++|++++||||||+ +.||||||||++|||+|||
T Consensus 26 kkkRk~rlPK~~dp~---~~PDPERWLP~~dRS~yrp 59 (59)
T PF08492_consen 26 KKKRKPRLPKNYDPG---KTPDPERWLPKRDRSYYRP 59 (59)
T ss_pred hhcccCCCCCCCCCC---CCCCccccCchhhhcccCC
Confidence 677888999999987 8999999999999999996
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=1.2e-15 Score=138.93 Aligned_cols=360 Identities=13% Similarity=0.099 Sum_probs=258.9
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHhh--h---------c
Q 005990 22 DLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKA--------DNIDDALSTIQSS--Q---------K 82 (666)
Q Consensus 22 ~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~--------g~~~~A~~~~~~~--~---------~ 82 (666)
.-+-.+..+++...|+...++|+.+|+..|.+..+|..+..|+-+. .+--+|...++.- . +
T Consensus 6 ~~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k 85 (478)
T KOG1129|consen 6 LDYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIK 85 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCccc
Confidence 3355677888999999999999999999999999999999988653 2222455444432 0 0
Q ss_pred c--c-----------------hhhhHHHHHH-HHHhCCHHHHHHHHHh--------------------------------
Q 005990 83 F--T-----------------FDFNYLKAYC-LYRQNRLDEALESLKI-------------------------------- 110 (666)
Q Consensus 83 ~--~-----------------~~~~~~~a~~-~~~~g~~~~A~~~l~~-------------------------------- 110 (666)
. . +-..+..... -.+-|..+.|+..-..
T Consensus 86 ~p~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG~f~n 165 (478)
T KOG1129|consen 86 TPFTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDGKFYN 165 (478)
T ss_pred CCCCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCcceee
Confidence 0 0 0000000000 1112223333321100
Q ss_pred ----cC----CCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCh-----hH----HHHHHHHHHcCChhHHHHH
Q 005990 111 ----QE----NNP-ATMLLKSQILYRSGEMDACVEFYQKLQKS---KIDS-----LE----INFVAGLISAGRASEVQKT 169 (666)
Q Consensus 111 ----~~----~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~-----~~----~~l~~~~~~~g~~~~A~~~ 169 (666)
++ ..+ .+..+.-.+++..++...|-......+.. .|.. .+ ..++.+|...|-+.+|...
T Consensus 166 lsRLN~tkYa~~p~l~kaLFey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aekq 245 (478)
T KOG1129|consen 166 LSRLNPTKYAERPTLVKALFEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQ 245 (478)
T ss_pred hhhcCchhhccChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHH
Confidence 11 122 22334455677778887777655554432 1211 11 7899999999999999999
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHH
Q 005990 170 LDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEA 249 (666)
Q Consensus 170 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA 249 (666)
|+..++..| .++.+..++.+|.+..+...|+..|...++.. |.++ .....+|.|+..++++++|
T Consensus 246 lqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~f----------P~~V-----T~l~g~ARi~eam~~~~~a 309 (478)
T KOG1129|consen 246 LQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSF----------PFDV-----TYLLGQARIHEAMEQQEDA 309 (478)
T ss_pred HHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcC----------Cchh-----hhhhhhHHHHHHHHhHHHH
Confidence 999988765 46688889999999999999999999998888 4444 5778899999999999999
Q ss_pred HHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHH
Q 005990 250 FGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLH 329 (666)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~ 329 (666)
.++|+.+++.+|.+.. ++..+ +.-|+.
T Consensus 310 ~~lYk~vlk~~~~nvE--------------------aiAci---------------------------------a~~yfY 336 (478)
T KOG1129|consen 310 LQLYKLVLKLHPINVE--------------------AIACI---------------------------------AVGYFY 336 (478)
T ss_pred HHHHHHHHhcCCccce--------------------eeeee---------------------------------eecccc
Confidence 9999999999997752 11111 445677
Q ss_pred cCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhh--CCChhHHHHHHHHHHHHHcCChhHHHH
Q 005990 330 ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK--LPDKSKIILLARAQVAAAANHPFIAAE 407 (666)
Q Consensus 330 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~la~~~~~~g~~~~A~~ 407 (666)
.++.+-|..++..+++..-.++.++..+|.+++..++++-++..|++++.. +|+...++|+.++.+....|++.-|..
T Consensus 337 ~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~r 416 (478)
T KOG1129|consen 337 DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKR 416 (478)
T ss_pred CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHH
Confidence 788888888888888888888888888888888888888888888888764 355556688888888888888888888
Q ss_pred HHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 005990 408 SLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWL 450 (666)
Q Consensus 408 ~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~ 450 (666)
.|+-++..++ +.+.+..|+.+-.+.|+.+.|..++..|-...|
T Consensus 417 cfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 417 CFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 8888888777 677788888888888888888888888766554
No 70
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=1.4e-14 Score=132.21 Aligned_cols=230 Identities=11% Similarity=0.063 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccc-------hhhhHHHH
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFT-------FDFNYLKA 92 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~a 92 (666)
+..-|-.+..+.-+.+.++|+..|-.+++.+|...++...+|..+.+.|..+.|+.+-+...... ..+.+++|
T Consensus 35 lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 35 LSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred ccHHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 44445666667778889999999999999999999999999999999999999999988774321 13556888
Q ss_pred HHHHHhCCHHHHHHHHHhcCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-------HHHHHHHHHcC
Q 005990 93 YCLYRQNRLDEALESLKIQEN----NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-------INFVAGLISAG 161 (666)
Q Consensus 93 ~~~~~~g~~~~A~~~l~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~l~~~~~~~g 161 (666)
.-|...|-++.|..+|....+ -..++..+..+|....+|++|+++-+++.+..++... +.|+..+....
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 888999999999999987433 4677888899999999999999999999888777655 55555555677
Q ss_pred ChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHH
Q 005990 162 RASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQ 241 (666)
Q Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 241 (666)
+++.|...+.+++..+|.+..+-..+|.++...|+|+.|++.++.+++.++..+ ..+.-.|..+|.
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl--------------~evl~~L~~~Y~ 260 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL--------------SEVLEMLYECYA 260 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH--------------HHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888885432 246677788888
Q ss_pred HcCChHHHHHHHHHHHhhCCCC
Q 005990 242 LLGNTQEAFGAYTDIIKRNLAD 263 (666)
Q Consensus 242 ~~g~~~eA~~~~~~~l~~~~~~ 263 (666)
++|+.++.+..+.++.+..+..
T Consensus 261 ~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 261 QLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HhCCHHHHHHHHHHHHHccCCc
Confidence 8888888888888888766644
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.72 E-value=2.5e-15 Score=146.96 Aligned_cols=220 Identities=13% Similarity=0.042 Sum_probs=166.6
Q ss_pred hccHHHHHHHHHHHHhcC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHhhhccch---hhhHHHHHHHHHhCCHHHHH
Q 005990 33 RSEFEQAVKVADQVLSTN---PSD-EDAMRCKVVALIKADNIDDALSTIQSSQKFTF---DFNYLKAYCLYRQNRLDEAL 105 (666)
Q Consensus 33 ~~~~~~A~~~~~~~l~~~---p~~-~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~a~~~~~~g~~~~A~ 105 (666)
.+..+.++..+.++|... |.. +..|+.+|.+|...|++++|+..|.++....| ..++.+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 346778888888888643 333 67788899999999999999999988866644 57778888999999999998
Q ss_pred HHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHH-HHHHHHcCChhHHHHHHHHhhhcCCCh
Q 005990 106 ESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINF-VAGLISAGRASEVQKTLDSLRVKATSS 180 (666)
Q Consensus 106 ~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~ 180 (666)
..+++ .|++..++..+|.+++..|++++|+..|++++..+|++....+ ..+....+++++|+..|.+.....+..
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 88876 6788999999999999999999999999999999998875222 223445788999999997765433222
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 005990 181 FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRN 260 (666)
Q Consensus 181 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~ 260 (666)
.|. .+.+++..|++.++ ..+..+...... ..++.+....+|+.+|.++..+|++++|+.+|++++..+
T Consensus 199 --~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~--------~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 199 --QWG-WNIVEFYLGKISEE-TLMERLKAGATD--------NTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred --ccH-HHHHHHHccCCCHH-HHHHHHHhcCCC--------cHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 222 46667777887654 345554432211 111224455799999999999999999999999999999
Q ss_pred CCCH
Q 005990 261 LADE 264 (666)
Q Consensus 261 ~~~~ 264 (666)
|.+.
T Consensus 267 ~~~~ 270 (296)
T PRK11189 267 VYNF 270 (296)
T ss_pred CchH
Confidence 8553
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.71 E-value=3.1e-15 Score=146.30 Aligned_cols=213 Identities=11% Similarity=-0.014 Sum_probs=132.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLA 192 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 192 (666)
...++.+|.++...|++++|+..|+++++.+|++.. .++|.++...|++++|+..|+++++.+|++..+++++|.++.
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 456777777777777777777777777777777666 777777777777777777777777777777777777777777
Q ss_pred HhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHh
Q 005990 193 EMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVN 272 (666)
Q Consensus 193 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~ 272 (666)
..|++++|++.|++++.++|.. . .......+....+++++|+..|.+.....+.+...
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~~----------~------~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~------ 201 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPND----------P------YRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG------ 201 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCC----------H------HHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH------
Confidence 7777777777777777776431 1 11111223445567777777776554332211100
Q ss_pred hhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHH--HHHHHhc----ccc
Q 005990 273 NLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQA--RELVAAL----PDM 346 (666)
Q Consensus 273 ~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A--~~~~~~~----~~~ 346 (666)
.+..++..|++..+ ...+... ...
T Consensus 202 --------------------------------------------------~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l 231 (296)
T PRK11189 202 --------------------------------------------------WNIVEFYLGKISEETLMERLKAGATDNTEL 231 (296)
T ss_pred --------------------------------------------------HHHHHHHccCCCHHHHHHHHHhcCCCcHHH
Confidence 02222333333222 1111111 122
Q ss_pred CCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHc
Q 005990 347 FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA 399 (666)
Q Consensus 347 ~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~ 399 (666)
.|....+++.+|.++...|++++|+.+|++++..+|.+.....+.+..+....
T Consensus 232 ~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~ 284 (296)
T PRK11189 232 AERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLG 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 34445678888888888888888888888888888754555666555555443
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.71 E-value=4.5e-15 Score=141.60 Aligned_cols=200 Identities=14% Similarity=0.083 Sum_probs=168.6
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHh
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQ 98 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~ 98 (666)
....++..+..+...|++++|+..+++++..+|++..++..+|.++...|++++|+..++++...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------- 94 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--------------- 94 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------------
Confidence 46778889999999999999999999999999999999999999999999999999999988433
Q ss_pred CCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CChhH--HHHHHHHHHcCChhHHHHHHHHhh
Q 005990 99 NRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSK--IDSLE--INFVAGLISAGRASEVQKTLDSLR 174 (666)
Q Consensus 99 g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 174 (666)
.|.+..++..+|.++...|++++|+..|++++... +.... .+++.++...|++++|...|.+++
T Consensus 95 ------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (234)
T TIGR02521 95 ------------NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRAL 162 (234)
T ss_pred ------------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566778888889999999999999999988643 22222 778888999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHH
Q 005990 175 VKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYT 254 (666)
Q Consensus 175 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~ 254 (666)
...|++...++.+|.++...|++++|+.++++++...+. + ...+..++.++...|+.++|..+.+
T Consensus 163 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------~-----~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 163 QIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ----------T-----AESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------C-----HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999988889999999999999999999999999888532 1 1355678889999999999998888
Q ss_pred HHHhhC
Q 005990 255 DIIKRN 260 (666)
Q Consensus 255 ~~l~~~ 260 (666)
.+....
T Consensus 228 ~~~~~~ 233 (234)
T TIGR02521 228 QLQKLF 233 (234)
T ss_pred HHHhhC
Confidence 776543
No 74
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.70 E-value=3e-14 Score=147.66 Aligned_cols=447 Identities=12% Similarity=0.020 Sum_probs=317.9
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchh---hhHHHHHHHHHhCCHHHHHHHHH
Q 005990 33 RSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFD---FNYLKAYCLYRQNRLDEALESLK 109 (666)
Q Consensus 33 ~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~a~~~~~~g~~~~A~~~l~ 109 (666)
..+...|+..+-+++.+++.-..+|..+|..|....+...|...|.++-++++. ..-..+..|.+..++++|..++-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 445788999999999999999999999999999999999999999999877653 44567788999999999998865
Q ss_pred hcCC------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChH
Q 005990 110 IQEN------NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSF 181 (666)
Q Consensus 110 ~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 181 (666)
...+ -...|..+|-.|...+++..|+..|+.+++.+|.+.. ..+|.+|...|++..|+..|.++...+|.+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 5222 3345667999999999999999999999999999988 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh--
Q 005990 182 ELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR-- 259 (666)
Q Consensus 182 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~-- 259 (666)
-..|..|.+.+..|.|.+|+..+...+..... ..-.+..++..+..++..+...|-...|..++++.++.
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~--------e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSL--------ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH--------HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999998876633 22333556677777777777777666666666665443
Q ss_pred -----C-CCCHhHHHHHHhhhhhccCCC-ChhHHHHHh-------HHHhhhhhhhhhhhH-H-hhcCCCHHHHHHHHHHH
Q 005990 260 -----N-LADESSFAVAVNNLVALKGPK-DVNDSLKKL-------DRIKEKDMQNFQLAR-V-LDLRLSPKQREAIYANR 323 (666)
Q Consensus 260 -----~-~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~l-------~~~~~~~~~~~~~~~-~-l~~~~~~~q~~~~~~~~ 323 (666)
. .++...+.++...+.++.... + +.....+ +.......+.+.... . ....+........++|+
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNL 781 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEEPS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNL 781 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhccc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHH
Confidence 3 334444444433333222111 1 1111111 111000000000000 0 00000000001123444
Q ss_pred HHHHHH------cCCh--HHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHH
Q 005990 324 VLLLLH------ANKM--DQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV 395 (666)
Q Consensus 324 a~~~~~------~~~~--~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~ 395 (666)
+.-|+. .+.. ..|+.++.++++...++...|..++.+ ...|++.-|...|-+.+...|.+.. .|+.++.+
T Consensus 782 Ginylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~-~W~NlgvL 859 (1238)
T KOG1127|consen 782 GINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHC-QWLNLGVL 859 (1238)
T ss_pred hHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchh-heecccee
Confidence 443332 2322 368999999999988888888888766 6678999999999999999999766 89999999
Q ss_pred HHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCC
Q 005990 396 AAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHG 474 (666)
Q Consensus 396 ~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 474 (666)
++...+++.|...|.++..++| +...|.-.+.+-...|+.-++..+|.-..+....... ... ..+|...-..+..+|
T Consensus 860 ~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gk-a~~-f~Yw~c~te~h~~Ng 937 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGK-AKK-FQYWLCATEIHLQNG 937 (1238)
T ss_pred EEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccc-cch-hhHHHHHHHHHHhcc
Confidence 9999999999999999999999 7777878888888899988888888875444322211 111 224444445556666
Q ss_pred ChhhHH----------HHHHHHHHhcCC
Q 005990 475 REEDAS----------HLFEELVKTHGS 492 (666)
Q Consensus 475 ~~~~A~----------~~~~~~l~~~p~ 492 (666)
++++-+ -.+++.+..+|+
T Consensus 938 ~~e~~I~t~~ki~sAs~al~~yf~~~p~ 965 (1238)
T KOG1127|consen 938 NIEESINTARKISSASLALSYYFLGHPQ 965 (1238)
T ss_pred chHHHHHHhhhhhhhHHHHHHHHhcCcc
Confidence 665433 344555555665
No 75
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=1.3e-15 Score=149.64 Aligned_cols=224 Identities=15% Similarity=0.153 Sum_probs=172.8
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch---hhhHHHHHHHHHhC
Q 005990 23 LFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF---DFNYLKAYCLYRQN 99 (666)
Q Consensus 23 l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~a~~~~~~g 99 (666)
-|..+..+++.|+..+|+-.|+.++..+|.+.++|..+|.+....++=..|+..+.++.+++| .+...+|.+|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 466777777777777777777777777777777777777777777777777777777766654 45556666666655
Q ss_pred CHHHHHHHHHh---------------------------------------------cC--CChhHHHHHHHHHHHcCCHH
Q 005990 100 RLDEALESLKI---------------------------------------------QE--NNPATMLLKSQILYRSGEMD 132 (666)
Q Consensus 100 ~~~~A~~~l~~---------------------------------------------~~--~~~~~~~~la~~~~~~g~~~ 132 (666)
.-.+|+.+|.+ .+ .++.+...||.+|+..|+|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 55555554432 23 37788999999999999999
Q ss_pred HHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 005990 133 ACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRI 210 (666)
Q Consensus 133 ~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 210 (666)
.|+.+|+.+|...|.+.. ..||+.+....+..+|+..|.+++++.|....++||+|.+++.+|.|.+|.++|-.|+.+
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999999999999988 899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHH
Q 005990 211 GQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFG 251 (666)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~ 251 (666)
.+.+....+.... ...+|-.|=.++..+++.+-+..
T Consensus 528 q~ks~~~~~~~~~-----se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMA-----SENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcc-----hHHHHHHHHHHHHHcCCchHHHH
Confidence 8764332211100 11356665566666666664443
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.70 E-value=7.1e-15 Score=128.19 Aligned_cols=205 Identities=13% Similarity=0.019 Sum_probs=163.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAE 193 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 193 (666)
.+...||.-|+..|++..|...++++++.+|++.. ..++.+|...|+.+.|.+.|++++.++|++.+++.|.|..++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 56678888888899999999999999988888877 6677777888888899999999999899999999999999999
Q ss_pred hcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhh
Q 005990 194 MNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNN 273 (666)
Q Consensus 194 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~ 273 (666)
+|++++|...|++|+..-.- .+....+.++|.|..++|+++.|..+|++++..+|+....
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y-------------~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~------- 175 (250)
T COG3063 116 QGRPEEAMQQFERALADPAY-------------GEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA------- 175 (250)
T ss_pred CCChHHHHHHHHHHHhCCCC-------------CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH-------
Confidence 99999999999988775321 1223578888999999999999999999999888866421
Q ss_pred hhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchH
Q 005990 274 LVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMP 353 (666)
Q Consensus 274 l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 353 (666)
+ ..++..++..|++..|..+++......+-....
T Consensus 176 -------------~---------------------------------l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~s 209 (250)
T COG3063 176 -------------L---------------------------------LELARLHYKAGDYAPARLYLERYQQRGGAQAES 209 (250)
T ss_pred -------------H---------------------------------HHHHHHHHhcccchHHHHHHHHHHhcccccHHH
Confidence 1 111666778888888888888888777766677
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHhhCCChhH
Q 005990 354 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK 386 (666)
Q Consensus 354 ~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 386 (666)
+++...+.-..|+-+.|-++=.++....|....
T Consensus 210 L~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 210 LLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 777777888888888888887777778887543
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.70 E-value=7.6e-15 Score=139.99 Aligned_cols=201 Identities=11% Similarity=0.053 Sum_probs=132.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSL 191 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 191 (666)
....+..+|.+++..|++++|+..|++++...|++.. ..++.++...|++++|+..|++++...|.+..+++++|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3566777777778888888888888777777766655 66677777777777777777777777777777777777777
Q ss_pred HHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHH
Q 005990 192 AEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAV 271 (666)
Q Consensus 192 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~ 271 (666)
...|++++|+..|++++..... +.....+..+|.++...|++++|...|.+++...|.+..
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------ 170 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLY-------------PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE------ 170 (234)
T ss_pred HHcccHHHHHHHHHHHHhcccc-------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH------
Confidence 7777777777777777664311 011135666777777777777777777777766654320
Q ss_pred hhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCc
Q 005990 272 NNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV 351 (666)
Q Consensus 272 ~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 351 (666)
....++.++...|++++|...++++....|.+.
T Consensus 171 -----------------------------------------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 203 (234)
T TIGR02521 171 -----------------------------------------------SLLELAELYYLRGQYKDARAYLERYQQTYNQTA 203 (234)
T ss_pred -----------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 011225556666667766666666666555555
Q ss_pred hHHHHHHHHHHhhCChhHHHHHHHHHHhh
Q 005990 352 MPLLLQAAVLVRENKAGKAEELLGQFAEK 380 (666)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~A~~~l~~~~~~ 380 (666)
..+...+.++...|+.++|..+.+.+...
T Consensus 204 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 204 ESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 55556666666666666666665555443
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.69 E-value=5.9e-14 Score=145.54 Aligned_cols=416 Identities=12% Similarity=0.024 Sum_probs=292.5
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch-----hhhH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF-----DFNY 89 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~ 89 (666)
.+|.-..++-..+..|....|...|.++|+++.++++.+.++.-..+..|....+++.|....-.+.+..+ ..+.
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~ 566 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV 566 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence 45666677778888888778999999999999999999999999999999999999999998666533322 3444
Q ss_pred HHHHHHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCCh
Q 005990 90 LKAYCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRA 163 (666)
Q Consensus 90 ~~a~~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~ 163 (666)
.++..|...+++..|+..|+. .|.+..+|..+|++|.+.|++..|+..|.++...+|++.- +-.+.+....|.|
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhH
Confidence 577788888888888887776 7889999999999999999999999999999999999876 7777888889999
Q ss_pred hHHHHHHHHhhhcCC-------ChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCC------------------
Q 005990 164 SEVQKTLDSLRVKAT-------SSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDD------------------ 218 (666)
Q Consensus 164 ~~A~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~------------------ 218 (666)
.+|+..+..++.... ...+.+...+..+...|-+..|..+++++++.+...+...
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 999999988776432 3456667777777778888889999988888754333211
Q ss_pred ------------------------CCChhhH-------------hhhhhhHHHHHHHHHHH--------cCChHHHHHHH
Q 005990 219 ------------------------NFAEDDI-------------EIELAPIAVQLAYVQQL--------LGNTQEAFGAY 253 (666)
Q Consensus 219 ------------------------~~~~~~~-------------~~~~~~~~~~la~~~~~--------~g~~~eA~~~~ 253 (666)
..+.+|+ .......|+++|.-|.. +.+...|+.++
T Consensus 727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 0000110 00001334455544443 11233556666
Q ss_pred HHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCCh
Q 005990 254 TDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKM 333 (666)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~ 333 (666)
.+++++..++..++. .+..+.+..++.-+...+- ...+..+.....+.|++.+++...++
T Consensus 807 KkaV~L~ann~~~Wn----aLGVlsg~gnva~aQHCfI----------------ks~~sep~~~~~W~NlgvL~l~n~d~ 866 (1238)
T KOG1127|consen 807 KKAVSLCANNEGLWN----ALGVLSGIGNVACAQHCFI----------------KSRFSEPTCHCQWLNLGVLVLENQDF 866 (1238)
T ss_pred HHHHHHhhccHHHHH----HHHHhhccchhhhhhhhhh----------------hhhhccccchhheeccceeEEecccH
Confidence 666655555543321 1112222223222222220 11122222334568889999999999
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhC--CC--hhHHHHHHHHHHHHHcCChhHHHHHH
Q 005990 334 DQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL--PD--KSKIILLARAQVAAAANHPFIAAESL 409 (666)
Q Consensus 334 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~--p~--~~~~~~~~la~~~~~~g~~~~A~~~l 409 (666)
+.|...|..+....|.+...|+..+.+....|+.-++..+|....... .. -....++....++...|++++-+...
T Consensus 867 E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~ 946 (1238)
T KOG1127|consen 867 EHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTA 946 (1238)
T ss_pred HHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHh
Confidence 999999999999999999999999999999999999998887743332 11 11224555556677888888877776
Q ss_pred hcCc----------CCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 005990 410 AKIP----------DIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWL 450 (666)
Q Consensus 410 ~~~~----------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~ 450 (666)
+++. ...| ....+...+....+++.+..|.+...+++.+..
T Consensus 947 ~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe 998 (1238)
T KOG1127|consen 947 RKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLE 998 (1238)
T ss_pred hhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6653 2334 333466778888888888888888888776543
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.69 E-value=1.8e-12 Score=129.24 Aligned_cols=418 Identities=15% Similarity=0.056 Sum_probs=292.2
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch---hhhHHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF---DFNYLK 91 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~ 91 (666)
..|...+.+-..+..+...|+-++|..++...+..++.+...|+.+|.++....+|++|+..|..+....+ .++..+
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl 115 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL 115 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 45777888888999999999999999999999999999999999999999999999999999999966543 577788
Q ss_pred HHHHHHhCCHHHHHH----HHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CChhH-------HHHHHHH
Q 005990 92 AYCLYRQNRLDEALE----SLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSK---IDSLE-------INFVAGL 157 (666)
Q Consensus 92 a~~~~~~g~~~~A~~----~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~-------~~l~~~~ 157 (666)
+....++++++-... +++..|.....|...|..+.-.|++..|..+.+...+.. |+..+ .....++
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~ 195 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQIL 195 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 888888888877665 444477788999999999999999999999998886643 44333 3445566
Q ss_pred HHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHH
Q 005990 158 ISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLA 237 (666)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 237 (666)
...|.+++|++.+......--+........|.+++..+++++|...|...+..+|+.+ .-+..+-
T Consensus 196 ~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~---------------~Yy~~l~ 260 (700)
T KOG1156|consen 196 IEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL---------------DYYEGLE 260 (700)
T ss_pred HHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH---------------HHHHHHH
Confidence 7788889998887765544445555667789999999999999999999999996532 2333333
Q ss_pred HHHHHcCChHHHH-HHHHHHHhhCCCCHhHHHHHHhhh------------h---hccCCCChhHHHHHhHHH------hh
Q 005990 238 YVQQLLGNTQEAF-GAYTDIIKRNLADESSFAVAVNNL------------V---ALKGPKDVNDSLKKLDRI------KE 295 (666)
Q Consensus 238 ~~~~~~g~~~eA~-~~~~~~l~~~~~~~~~~~~~~~~l------------~---~~~~~~~~~~a~~~l~~~------~~ 295 (666)
.++..--+.-+++ .+|...-+..|.......+..+.+ + ...+-.-++..++-|.+. ++
T Consensus 261 ~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le 340 (700)
T KOG1156|consen 261 KALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLE 340 (700)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHH
Confidence 3333223333444 555554444332221111100000 0 000111111111111111 10
Q ss_pred hhhhhhhhhHHhhc----------C-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhh
Q 005990 296 KDMQNFQLARVLDL----------R-LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRE 364 (666)
Q Consensus 296 ~~~~~~~~~~~l~~----------~-~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~ 364 (666)
.- .......+.. + -.+.......+-++.-+-..|+++.|..+++.++...|.-++.++..|.++...
T Consensus 341 ~L--vt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~ 418 (700)
T KOG1156|consen 341 KL--VTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHA 418 (700)
T ss_pred HH--HHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhc
Confidence 00 0000000000 0 011122334555677788999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC--------ChhHHHH--HHHHHHHcCC
Q 005990 365 NKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH--------MPATVAT--LVALKERAGD 434 (666)
Q Consensus 365 g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~--------~~~~~~~--l~~~~~~~g~ 434 (666)
|+.++|...+..+.+.+-.+ ..+..-.|.-.++.++.++|.+++........ ..-+|+. -|..|.++|+
T Consensus 419 G~l~eAa~~l~ea~elD~aD-R~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k 497 (700)
T KOG1156|consen 419 GLLDEAAAWLDEAQELDTAD-RAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNK 497 (700)
T ss_pred CChHHHHHHHHHHHhccchh-HHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHH
Confidence 99999999999998887553 32555778888899999999999888754432 1123433 3788999999
Q ss_pred hhHHHHHHHHHHHHHH
Q 005990 435 IDGAAAVLDSAIKWWL 450 (666)
Q Consensus 435 ~~~A~~~l~~a~~~~~ 450 (666)
+..|+.-|...-.++.
T Consensus 498 ~g~ALKkfh~i~k~~~ 513 (700)
T KOG1156|consen 498 LGLALKKFHEIEKHYK 513 (700)
T ss_pred HHHHHHHHhhHHHHHH
Confidence 9999988887766664
No 80
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=5.9e-12 Score=120.73 Aligned_cols=441 Identities=10% Similarity=0.017 Sum_probs=319.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccc---hhhhHHHHHHHHHhCCHHHHHHHHHh----cCCC
Q 005990 42 VADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFT---FDFNYLKAYCLYRQNRLDEALESLKI----QENN 114 (666)
Q Consensus 42 ~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~a~~~~~~g~~~~A~~~l~~----~~~~ 114 (666)
.|+..+..+--+...|...|.--..++++..|..+|+++...+ ..+++..+.+-++......|..+++. .|.-
T Consensus 61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 3444455555566788888999999999999999999996543 45777888888999999999998887 5666
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAE 193 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 193 (666)
...|+-...+--.+|+...|..+|++.+.-.|+... ......-..-+..+.|..+|++.+-.+|+.. .|...|..-..
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~-~wikyarFE~k 219 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVS-NWIKYARFEEK 219 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHH-HHHHHHHHHHh
Confidence 677877777778899999999999999999998765 5555556667889999999999988887654 88889999999
Q ss_pred hcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHH--HH
Q 005990 194 MNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAV--AV 271 (666)
Q Consensus 194 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~--~~ 271 (666)
.|+...|...|++|++.-.+ |. +...+++..|..-..+..++.|.-+|+-++..-|.+...... ..
T Consensus 220 ~g~~~~aR~VyerAie~~~~----------d~--~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 220 HGNVALARSVYERAIEFLGD----------DE--EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYT 287 (677)
T ss_pred cCcHHHHHHHHHHHHHHhhh----------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 99999999999999987632 21 122366667777778889999999999999988877321111 11
Q ss_pred hhhhhccCC---CChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCC
Q 005990 272 NNLVALKGP---KDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFP 348 (666)
Q Consensus 272 ~~l~~~~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p 348 (666)
..--..++. .++....++++ .-..+...... -..++....+....|+.+.-.+.++.++...|
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~q-----------YE~~v~~np~n---YDsWfdylrL~e~~g~~~~Ire~yErAIanvp 353 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQ-----------YEKEVSKNPYN---YDSWFDYLRLEESVGDKDRIRETYERAIANVP 353 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhH-----------HHHHHHhCCCC---chHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Confidence 100011111 11111122221 11111111000 01233445566677999999999999998876
Q ss_pred CCch---------HHHHHHH-HHHhhCChhHHHHHHHHHHhhCCCh---hHHHHHHHHHHHHHcCChhHHHHHHhcCcCC
Q 005990 349 DSVM---------PLLLQAA-VLVRENKAGKAEELLGQFAEKLPDK---SKIILLARAQVAAAANHPFIAAESLAKIPDI 415 (666)
Q Consensus 349 ~~~~---------~~~~~a~-~~~~~g~~~~A~~~l~~~~~~~p~~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 415 (666)
.... +++..+. .-....+.+.+..+|+.+++.-|.. -.-++++.|+..+++.+...|..+|-.++..
T Consensus 354 p~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~ 433 (677)
T KOG1915|consen 354 PASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK 433 (677)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc
Confidence 5321 1222221 1124678999999999999988862 2337888999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCChHH
Q 005990 416 QHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEA 495 (666)
Q Consensus 416 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 495 (666)
.|.+.++...+.+-.++++++....+|++.+++.|.+. ..|...|.+-..+|+.+.|..+|+-++.. |..+.
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c-------~~W~kyaElE~~LgdtdRaRaifelAi~q-p~ldm 505 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENC-------YAWSKYAELETSLGDTDRARAIFELAISQ-PALDM 505 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhh-------HHHHHHHHHHHHhhhHHHHHHHHHHHhcC-ccccc
Confidence 99888888889999999999999999999999876554 38889999999999999999999998865 33222
Q ss_pred HHHHHHhh-----ccCChhhHHHHHhc
Q 005990 496 LVGLVTTS-----AHVDVDKAESYEKR 517 (666)
Q Consensus 496 l~~l~~~~-----~~~d~~~a~~~~~~ 517 (666)
-..|..+| +....+++..+-.+
T Consensus 506 pellwkaYIdFEi~~~E~ekaR~LYer 532 (677)
T KOG1915|consen 506 PELLWKAYIDFEIEEGEFEKARALYER 532 (677)
T ss_pred HHHHHHHhhhhhhhcchHHHHHHHHHH
Confidence 12233333 34445566665444
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.68 E-value=9.7e-15 Score=147.91 Aligned_cols=237 Identities=18% Similarity=0.146 Sum_probs=193.6
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc---
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLST--------NPSDEDAMRCKVVALIKADNIDDALSTIQSSQKF--- 83 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~--- 83 (666)
.+|.-...+...+..+..+|+|+.|+..|+.+++. +|.-......+|.+|..+++|.+|+.+|+++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45666677777999999999999999999999998 4444555566999999999999999999999432
Q ss_pred -----c---hhhhHHHHHHHHHhCCHHHHHHHHHhc------------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005990 84 -----T---FDFNYLKAYCLYRQNRLDEALESLKIQ------------ENNPATMLLKSQILYRSGEMDACVEFYQKLQK 143 (666)
Q Consensus 84 -----~---~~~~~~~a~~~~~~g~~~~A~~~l~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 143 (666)
. ...+..+++.|++.|++++|..+++.. ++-...+..++.++...+++++|+.+|+++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 1 245668999999999999999888762 11234567889999999999999999999977
Q ss_pred h-----CCChhH-----HHHHHHHHHcCChhHHHHHHHHhhhcC--------CChHHHHHHHHHHHHHhcCHHHHHHHHH
Q 005990 144 S-----KIDSLE-----INFVAGLISAGRASEVQKTLDSLRVKA--------TSSFELAYNTACSLAEMNKYTEAEQLLL 205 (666)
Q Consensus 144 ~-----~p~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~l~ 205 (666)
+ .+++.. .+|+.+|..+|++++|.+.|++++... +.....+.++|..|.+.+++.+|..+|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 4 334422 899999999999999999999998743 3334578899999999999999999999
Q ss_pred HHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005990 206 TARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 206 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~ 259 (666)
.++.+. ...+.+. +++...+.+|+.+|..+|++++|+++.+.++..
T Consensus 434 ~~~~i~-~~~g~~~-------~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 434 EAKDIM-KLCGPDH-------PDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHH-HHhCCCC-------CchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 999998 5444222 345578999999999999999999999998743
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.67 E-value=3.4e-14 Score=123.98 Aligned_cols=204 Identities=14% Similarity=0.068 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhC
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQN 99 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g 99 (666)
..+.+.++..+++.|++..|...++++|+.+|++..+|..++.+|...|..+.|.+.|+++..+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---------------- 98 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL---------------- 98 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----------------
Confidence 4567889999999999999999999999999999999999999999999999999999998554
Q ss_pred CHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCChhH--HHHHHHHHHcCChhHHHHHHHHhhh
Q 005990 100 RLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKS--KIDSLE--INFVAGLISAGRASEVQKTLDSLRV 175 (666)
Q Consensus 100 ~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 175 (666)
.|++..+++..|..++.+|++++|...|++++.. .+.... .|++.|..+.|+++.|...|++++.
T Consensus 99 -----------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 99 -----------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred -----------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 5678899999999999999999999999999863 222222 8999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHH
Q 005990 176 KATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTD 255 (666)
Q Consensus 176 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~ 255 (666)
.+|+.+.....++..++..|+|..|..++++....... .+..+.....+....|+-+.|-++=.+
T Consensus 168 ~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~---------------~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 168 LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGA---------------QAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccc---------------cHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999999999999988776632 113445556777888999988888888
Q ss_pred HHhhCCCCHh
Q 005990 256 IIKRNLADES 265 (666)
Q Consensus 256 ~l~~~~~~~~ 265 (666)
+....|....
T Consensus 233 L~r~fP~s~e 242 (250)
T COG3063 233 LQRLFPYSEE 242 (250)
T ss_pred HHHhCCCcHH
Confidence 8888887754
No 83
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=6.8e-15 Score=144.75 Aligned_cols=265 Identities=12% Similarity=0.027 Sum_probs=203.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELA 230 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 230 (666)
+..|..+++.|+..+|.-+|+.++..+|.+.++|..||.+....++-..|+..|+++++++|+.+
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl--------------- 353 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL--------------- 353 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH---------------
Confidence 77889999999999999999999999999999999999999999999999999999999996543
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcC
Q 005990 231 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 310 (666)
Q Consensus 231 ~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~ 310 (666)
.++..||..|...|.-.+|+.++..-+...|...... ....... +.. ...
T Consensus 354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~--------~a~~~~~-~~~---------------------~~s 403 (579)
T KOG1125|consen 354 EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLV--------SAGENED-FEN---------------------TKS 403 (579)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcc--------ccCcccc-ccC---------------------CcC
Confidence 5899999999999999999999999998887542110 0000000 000 000
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCC--CCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHH
Q 005990 311 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFP--DSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII 388 (666)
Q Consensus 311 ~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~ 388 (666)
+. ....+....++|-++....| .++++...+|.+|.-.|+|++|+.+|+.++...|.+.. +
T Consensus 404 ~~----------------~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~-l 466 (579)
T KOG1125|consen 404 FL----------------DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL-L 466 (579)
T ss_pred CC----------------CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH-H
Confidence 00 00111223344445555566 57788999999999999999999999999999999776 8
Q ss_pred HHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcc---hHHHHHH
Q 005990 389 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDN---KLSVIMQ 464 (666)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~---~~~~~~~ 464 (666)
|..|+-.+....+.++|+..|.+++++.| ...+++.||..|..+|.|.+|..+|-.|+...+....... ....+|.
T Consensus 467 WNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~ 546 (579)
T KOG1125|consen 467 WNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQ 546 (579)
T ss_pred HHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHH
Confidence 99999999999999999999999999999 7778899999999999999999999999998776322111 1223565
Q ss_pred HHHHHHHhCCChh
Q 005990 465 EAASFKLRHGREE 477 (666)
Q Consensus 465 ~l~~~~~~~g~~~ 477 (666)
.|-.++...++.+
T Consensus 547 tLR~als~~~~~D 559 (579)
T KOG1125|consen 547 TLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHHHcCCch
Confidence 5544454555544
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.65 E-value=7.8e-13 Score=134.79 Aligned_cols=316 Identities=13% Similarity=0.066 Sum_probs=208.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcC
Q 005990 50 NPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSG 129 (666)
Q Consensus 50 ~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g 129 (666)
+|+++.++..++.++...|++++|...+.++.... ....+.....+..+.+++..|
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~e~~~~~a~~~~~~g 57 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQAL------------------------AARATERERAHVEALSAWIAG 57 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh------------------------ccCCCHHHHHHHHHHHHHHcC
Confidence 78899999999999999999988877666652211 111223456677888888889
Q ss_pred CHHHHHHHHHHHHhhCCChhH-HHHHHHHHH----cCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHH
Q 005990 130 EMDACVEFYQKLQKSKIDSLE-INFVAGLIS----AGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLL 204 (666)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~-~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 204 (666)
++++|+.++++++...|++.. ...+..+.. .+....+...+......+|.....+..+|.++...|++++|+..+
T Consensus 58 ~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 137 (355)
T cd05804 58 DLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAA 137 (355)
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999998888888765 221323333 344455555555544566777778888888999999999999999
Q ss_pred HHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChh
Q 005990 205 LTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVN 284 (666)
Q Consensus 205 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 284 (666)
++++.+.|.. ..++..+|.++...|++++|+.++++++...|.+....
T Consensus 138 ~~al~~~p~~---------------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~----------------- 185 (355)
T cd05804 138 RRALELNPDD---------------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLR----------------- 185 (355)
T ss_pred HHHHhhCCCC---------------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchh-----------------
Confidence 9999988542 24778889999999999999999998887665321000
Q ss_pred HHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchH-HH-HH---HH
Q 005990 285 DSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMP-LL-LQ---AA 359 (666)
Q Consensus 285 ~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~-~~---a~ 359 (666)
...+..++.++...|++++|+..++++....|..... .. .. ..
T Consensus 186 --------------------------------~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (355)
T cd05804 186 --------------------------------GHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLW 233 (355)
T ss_pred --------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHH
Confidence 0012344778888999999999998886555522211 11 11 12
Q ss_pred HHHhhCChhHHHHH--HHHH-HhhCCCh-hHHHHHHHHHHHHHcCChhHHHHHHhcCcCCC------C----ChhHHHHH
Q 005990 360 VLVRENKAGKAEEL--LGQF-AEKLPDK-SKIILLARAQVAAAANHPFIAAESLAKIPDIQ------H----MPATVATL 425 (666)
Q Consensus 360 ~~~~~g~~~~A~~~--l~~~-~~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~------~----~~~~~~~l 425 (666)
.+...|....+... +... ....+.. ........+.++...|+.++|...++.+.... . ...+....
T Consensus 234 ~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~ 313 (355)
T cd05804 234 RLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAE 313 (355)
T ss_pred HHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHH
Confidence 22334433333322 2111 1111211 11123356777888899999998888764311 1 23345677
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 005990 426 VALKERAGDIDGAAAVLDSAIKWWLNAM 453 (666)
Q Consensus 426 ~~~~~~~g~~~~A~~~l~~a~~~~~~~~ 453 (666)
+.++...|++++|...+..++.....-.
T Consensus 314 A~~~~~~g~~~~A~~~L~~al~~a~~~g 341 (355)
T cd05804 314 ALYAFAEGNYATALELLGPVRDDLARIG 341 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 8889999999999999999988764433
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.63 E-value=6.2e-13 Score=135.52 Aligned_cols=207 Identities=12% Similarity=0.033 Sum_probs=154.6
Q ss_pred CCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHH
Q 005990 16 PPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSD---EDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKA 92 (666)
Q Consensus 16 ~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a 92 (666)
+|+.+.+++..+..+...|+++.+...+.++....|.+ .+..+..+.++...|++++|+..++++...
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------- 72 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--------- 72 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------
Confidence 68899999999999999999999999999988887754 567888899999999999999999987433
Q ss_pred HHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCH----HHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHH
Q 005990 93 YCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEM----DACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEV 166 (666)
Q Consensus 93 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~----~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A 166 (666)
.|.+..++.. +..++..|++ ..+...+.......|.... ..++.++...|++++|
T Consensus 73 ------------------~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 133 (355)
T cd05804 73 ------------------YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRA 133 (355)
T ss_pred ------------------CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 3344433332 3333333333 3333333322223344333 5667778888888888
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCCh
Q 005990 167 QKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNT 246 (666)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 246 (666)
+..+++++...|++..++..+|.++...|++++|+.+|++++...+.. + ......+..+|.++..+|++
T Consensus 134 ~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~-------~----~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 134 EEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS-------S----MLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC-------c----chhHHHHHHHHHHHHHCCCH
Confidence 888888888888888899999999999999999999999998877431 0 01124677899999999999
Q ss_pred HHHHHHHHHHHhhCC
Q 005990 247 QEAFGAYTDIIKRNL 261 (666)
Q Consensus 247 ~eA~~~~~~~l~~~~ 261 (666)
++|+.+|++++...+
T Consensus 203 ~~A~~~~~~~~~~~~ 217 (355)
T cd05804 203 EAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999876555
No 86
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.60 E-value=2.8e-11 Score=139.33 Aligned_cols=383 Identities=13% Similarity=0.075 Sum_probs=270.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhccc--hhhhHHHHHHHHHhCCHHHHHHHHHhcCC-----ChhHHHHHHHHHHH
Q 005990 55 DAMRCKVVALIKADNIDDALSTIQSSQKFT--FDFNYLKAYCLYRQNRLDEALESLKIQEN-----NPATMLLKSQILYR 127 (666)
Q Consensus 55 ~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~a~~~~~~g~~~~A~~~l~~~~~-----~~~~~~~la~~~~~ 127 (666)
..+...+..+...|++.+|+..+..+.... .......+..+...|+++.+..++...|. ++......+.++..
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 445566777888999999998888773332 13344566777788999988888877542 46667788999999
Q ss_pred cCCHHHHHHHHHHHHhhCCC-----h--hH----HHHHHHHHHcCChhHHHHHHHHhhhcCCC-h----HHHHHHHHHHH
Q 005990 128 SGEMDACVEFYQKLQKSKID-----S--LE----INFVAGLISAGRASEVQKTLDSLRVKATS-S----FELAYNTACSL 191 (666)
Q Consensus 128 ~g~~~~A~~~~~~~l~~~p~-----~--~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~la~~~ 191 (666)
.|++++|..++..+....+. . .. ..++.++...|++++|...++.++...+. + ..++..+|.++
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 99999999999988653221 1 11 45667777899999999999998764332 1 23567789999
Q ss_pred HHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHH
Q 005990 192 AEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAV 271 (666)
Q Consensus 192 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~ 271 (666)
...|++++|...+++++...... .+. .....+...+|.++...|++++|...+++++.......
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~--------g~~-~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~------- 565 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQH--------DVY-HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH------- 565 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhh--------cch-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc-------
Confidence 99999999999999999876431 111 11234678889999999999999999999875421100
Q ss_pred hhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCC---
Q 005990 272 NNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFP--- 348 (666)
Q Consensus 272 ~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--- 348 (666)
.. . ......+....+.++...|++++|...+.++.....
T Consensus 566 -------~~-~------------------------------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 607 (903)
T PRK04841 566 -------LE-Q------------------------------LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ 607 (903)
T ss_pred -------cc-c------------------------------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC
Confidence 00 0 000011123447778889999999999988765422
Q ss_pred -C-CchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChh--HHH----HHHHHHHHHHcCChhHHHHHHhcCcCCCC-Ch
Q 005990 349 -D-SVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS--KII----LLARAQVAAAANHPFIAAESLAKIPDIQH-MP 419 (666)
Q Consensus 349 -~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~--~~~----~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~ 419 (666)
. ....+..++.++...|++++|...+..+........ ... .......+...|+.+.|..++........ .+
T Consensus 608 ~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~ 687 (903)
T PRK04841 608 PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANN 687 (903)
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccc
Confidence 1 124455678889999999999999998876432211 101 11122445568999999999988765332 22
Q ss_pred h----HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC
Q 005990 420 A----TVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 420 ~----~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
. .+..++.++...|++++|...|++++....... .......++..+|.++...|+.++|...+.+++.....
T Consensus 688 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g-~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 688 HFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLR-LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 1 245788899999999999999999998754432 22233345667899999999999999999999988754
No 87
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.8e-14 Score=134.43 Aligned_cols=284 Identities=14% Similarity=0.071 Sum_probs=216.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhh
Q 005990 152 NFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAP 231 (666)
Q Consensus 152 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 231 (666)
..+..++....|.+|+..+..++..+|++...|.+.+.++...|+|++|....++.+++.+. +..
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~---------------~~k 118 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG---------------FSK 118 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCC---------------ccc
Confidence 34445666777888888888888888888888888999999999999998888888887732 224
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCC
Q 005990 232 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL 311 (666)
Q Consensus 232 ~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~ 311 (666)
.+...+.++...++..+|...|+.. .+ . .+.+ ++..++.++.....
T Consensus 119 ~~~r~~~c~~a~~~~i~A~~~~~~~---~~-----~-~~an-------------al~~~~~~~~s~s~------------ 164 (486)
T KOG0550|consen 119 GQLREGQCHLALSDLIEAEEKLKSK---QA-----Y-KAAN-------------ALPTLEKLAPSHSR------------ 164 (486)
T ss_pred cccchhhhhhhhHHHHHHHHHhhhh---hh-----h-HHhh-------------hhhhhhcccccccC------------
Confidence 6667778888888888887777611 10 0 1111 11111111111000
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChh------
Q 005990 312 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS------ 385 (666)
Q Consensus 312 ~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~------ 385 (666)
.+.........+.++...|++++|....-.+++.++.+..+++..+.+++..++.+.|+..|++.+..+|++.
T Consensus 165 -~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 165 -EPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSAS 243 (486)
T ss_pred -CchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHh
Confidence 0111112234478899999999999999999999999999999999999999999999999999999999843
Q ss_pred -----HHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-C----hhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccC
Q 005990 386 -----KIILLARAQVAAAANHPFIAAESLAKIPDIQH-M----PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTE 455 (666)
Q Consensus 386 -----~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~ 455 (666)
...+-..+.-..+.|++..|.+.|..++.++| + .-++...+.+..++|+..+|+...+.++.+.
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD------ 317 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID------ 317 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC------
Confidence 22445556677899999999999999999998 2 3346778889999999999999999998875
Q ss_pred cchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC
Q 005990 456 DNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 456 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
+.+...+...|.+++..+++++|++.|+++++...+
T Consensus 318 -~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 318 -SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344457778899999999999999999999998765
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.58 E-value=1.3e-11 Score=127.16 Aligned_cols=311 Identities=14% Similarity=0.082 Sum_probs=199.3
Q ss_pred hhHHHHHHHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHH-
Q 005990 87 FNYLKAYCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLIS- 159 (666)
Q Consensus 87 ~~~~~a~~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~- 159 (666)
+.+-++.++...|++++|++.|+. ..+...+....|.++..+|++++|..+|+.+|..+|++.. ..+..++.-
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhh
Confidence 444555566666666666666655 3446778889999999999999999999999999999988 344443311
Q ss_pred ----cCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHH
Q 005990 160 ----AGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTE-AEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAV 234 (666)
Q Consensus 160 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (666)
....+....+|+.+....|.+. +.-.+...+..-..|.. +..++...+..+- ..++.
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp~s~-~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv-----------------PslF~ 147 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYPRSD-APRRLPLDFLEGDEFKERLDEYLRPQLRKGV-----------------PSLFS 147 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCcccc-chhHhhcccCCHHHHHHHHHHHHHHHHhcCC-----------------chHHH
Confidence 1245666777777777666543 22222222222223322 3344444443331 12444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHH
Q 005990 235 QLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPK 314 (666)
Q Consensus 235 ~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 314 (666)
.+-.+|....+..-...++......-.. .+.....+ -...-.+.
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~---------------~~~~~~~~---------------------~~~~~~p~ 191 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLES---------------NGSFSNGD---------------------DEEKEPPS 191 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcc---------------cCCCCCcc---------------------ccccCCch
Confidence 4444443222211111111111100000 00000000 00011111
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHH
Q 005990 315 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ 394 (666)
Q Consensus 315 q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~ 394 (666)
....+++.++..|...|++++|+++++.++...|..++.++..|.++-..|++.+|...++.+...++.+.. +....+.
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy-iNsK~aK 270 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY-INSKCAK 270 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH-HHHHHHH
Confidence 223355677888999999999999999999999999999999999999999999999999999999988544 7888888
Q ss_pred HHHHcCChhHHHHHHhcCcCCC--CCh------hHH--HHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 005990 395 VAAAANHPFIAAESLAKIPDIQ--HMP------ATV--ATLVALKERAGDIDGAAAVLDSAIKWWLNA 452 (666)
Q Consensus 395 ~~~~~g~~~~A~~~l~~~~~~~--~~~------~~~--~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~ 452 (666)
.+++.|+.++|..++......+ +.. .+| ...|..|.+.|++..|+..|..+.+++..-
T Consensus 271 y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 271 YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988875544 211 123 456888999999999999999988887544
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.57 E-value=5.9e-13 Score=126.72 Aligned_cols=197 Identities=14% Similarity=0.061 Sum_probs=149.4
Q ss_pred CCCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHH
Q 005990 14 SQPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDE---DAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYL 90 (666)
Q Consensus 14 ~~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 90 (666)
|.++..+..++..+..++..|+|++|+..+++++..+|+++ .+++.+|.++...|++++|+..++++.+..|..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~--- 103 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH--- 103 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---
Confidence 56677899999999999999999999999999999999875 688999999999999999999999985443210
Q ss_pred HHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCC
Q 005990 91 KAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRS--------GEMDACVEFYQKLQKSKIDSLEINFVAGLISAGR 162 (666)
Q Consensus 91 ~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~ 162 (666)
+....+++.+|.+++.. |++++|+..|++++..+|++.....+. ...+.
T Consensus 104 ---------------------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~--~~~~~ 160 (235)
T TIGR03302 104 ---------------------PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK--KRMDY 160 (235)
T ss_pred ---------------------CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH--HHHHH
Confidence 01112455555555554 889999999999999999875411110 00000
Q ss_pred hhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHH
Q 005990 163 ASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQL 242 (666)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 242 (666)
... ......+.+|.+++..|++.+|+..|++++...++. +....+++.+|.++..
T Consensus 161 ~~~-------------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~a~~~l~~~~~~ 215 (235)
T TIGR03302 161 LRN-------------RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDT------------PATEEALARLVEAYLK 215 (235)
T ss_pred HHH-------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC------------cchHHHHHHHHHHHHH
Confidence 000 012234678999999999999999999999998642 2234699999999999
Q ss_pred cCChHHHHHHHHHHHhhCC
Q 005990 243 LGNTQEAFGAYTDIIKRNL 261 (666)
Q Consensus 243 ~g~~~eA~~~~~~~l~~~~ 261 (666)
.|++++|..+++.+....|
T Consensus 216 lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 216 LGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred cCCHHHHHHHHHHHHhhCC
Confidence 9999999999888776554
No 90
>PLN02789 farnesyltranstransferase
Probab=99.57 E-value=1.7e-12 Score=126.35 Aligned_cols=222 Identities=6% Similarity=-0.012 Sum_probs=172.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcC-ChhHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAG-RASEVQKTLDSLRVKATSSFELAYNTACSLA 192 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 192 (666)
.++..+-.++...+++++|+..+.++|..+|++.. ...+.++...| .+++++..+++++..+|+++.+|+..+.++.
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 34444455567788999999999999999999988 67777788887 6799999999999999999999999999999
Q ss_pred HhcCH--HHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHH
Q 005990 193 EMNKY--TEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVA 270 (666)
Q Consensus 193 ~~g~~--~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~ 270 (666)
..|+. ++++.++.++++.++.. ..+|...+.++...|++++|++.+.++++.+|.+...+...
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkN---------------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R 182 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKN---------------YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQR 182 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHH
Confidence 88874 78899999999999543 26999999999999999999999999999999886433221
Q ss_pred HhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCC
Q 005990 271 VNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS 350 (666)
Q Consensus 271 ~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 350 (666)
...+..+ ..+-......++++.+..+++...|++
T Consensus 183 ~~vl~~~----------------------------------------------~~l~~~~~~~e~el~y~~~aI~~~P~N 216 (320)
T PLN02789 183 YFVITRS----------------------------------------------PLLGGLEAMRDSELKYTIDAILANPRN 216 (320)
T ss_pred HHHHHhc----------------------------------------------cccccccccHHHHHHHHHHHHHhCCCC
Confidence 1100000 000000012346777888889999999
Q ss_pred chHHHHHHHHHHh----hCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHc
Q 005990 351 VMPLLLQAAVLVR----ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA 399 (666)
Q Consensus 351 ~~~~~~~a~~~~~----~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~ 399 (666)
..++..++.++.. .+...+|+..+.+++...|.+.. ++-.++.+|...
T Consensus 217 ~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~-al~~l~d~~~~~ 268 (320)
T PLN02789 217 ESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVF-ALSDLLDLLCEG 268 (320)
T ss_pred cCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHH-HHHHHHHHHHhh
Confidence 9999988888877 34567799999998888888665 778888888753
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.56 E-value=1.3e-12 Score=134.39 Aligned_cols=321 Identities=17% Similarity=0.132 Sum_probs=201.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLA 192 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 192 (666)
..+....+.++...|++++|++.++.....-.|... ...|.++...|++++|...|..++..+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 356677888888899999999988877666666555 677888888899999999999999999988888877777763
Q ss_pred Hhc-----CHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHH-HHHHHHHhhCCCCHhH
Q 005990 193 EMN-----KYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAF-GAYTDIIKRNLADESS 266 (666)
Q Consensus 193 ~~g-----~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~-~~~~~~l~~~~~~~~~ 266 (666)
... +.+.-..+|+......|.+.. ...+...+..-..|.... .++...+......
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~----------------~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs--- 144 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDA----------------PRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS--- 144 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccc----------------hhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---
Confidence 332 345556666666555543211 001110010011222222 2222222221111
Q ss_pred HHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhcccc
Q 005990 267 FAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM 346 (666)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 346 (666)
.|..++.+ +.......+...++.-+...-...............
T Consensus 145 ----------------lF~~lk~L--------------------y~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~ 188 (517)
T PF12569_consen 145 ----------------LFSNLKPL--------------------YKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKE 188 (517)
T ss_pred ----------------HHHHHHHH--------------------HcChhHHHHHHHHHHHHHHhhcccCCCCCccccccC
Confidence 11111111 000000011111111111110000000000000111
Q ss_pred CCCC-chHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHH
Q 005990 347 FPDS-VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVAT 424 (666)
Q Consensus 347 ~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~ 424 (666)
.|.. ..+++++|+.|...|++++|+.+++++++..|... ++++..|.++-+.|++.+|.+.++.+..++. +-.+...
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~-ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK 267 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV-ELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSK 267 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHH
Confidence 2222 14558889999999999999999999999999964 5999999999999999999999999999999 7777888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcC
Q 005990 425 LVALKERAGDIDGAAAVLDSAIKWWLNAMT--EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG 491 (666)
Q Consensus 425 l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 491 (666)
.+..+.+.|+.++|...+........+... .+.+..++....|.+|.+.|++..|+..|..+.+.+-
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 899999999999999888765432110000 1234456667889999999999999999999987764
No 92
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.55 E-value=7.6e-10 Score=110.48 Aligned_cols=470 Identities=11% Similarity=0.075 Sum_probs=272.7
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHhhhc---c
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKA--------DNIDDALSTIQSSQK---F 83 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~--------g~~~~A~~~~~~~~~---~ 83 (666)
++|-++..++.-+..... .-..+-.-+|+++++..|.+...|+.....-..+ ..|+.--..|+++.- .
T Consensus 22 Rnp~svk~W~RYIe~k~~-sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHk 100 (835)
T KOG2047|consen 22 RNPFSVKCWLRYIEHKAG-SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHK 100 (835)
T ss_pred cCchhHHHHHHHHHHHcc-CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhc
Confidence 566666665554443332 4456777889999999999988887655322111 112222223333311 2
Q ss_pred chhhhHHHHHHHHHhCCHHHHHHHHHh----cC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHH
Q 005990 84 TFDFNYLKAYCLYRQNRLDEALESLKI----QE--NNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGL 157 (666)
Q Consensus 84 ~~~~~~~~a~~~~~~g~~~~A~~~l~~----~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~ 157 (666)
-|..+......+..+|++..-...|.. .| .+..+|-+.-......|-.+-++.+|++.++..|... .+....+
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~-eeyie~L 179 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAR-EEYIEYL 179 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHH-HHHHHHH
Confidence 377888888888999998887777766 33 3778888888888899999999999999999999885 4555667
Q ss_pred HHcCChhHHHHHHHHhhhcC-------CChHHHHHHHHHHHHHhcCHHHH---HHHHHHHHHhhhhhccCCCCChhhHhh
Q 005990 158 ISAGRASEVQKTLDSLRVKA-------TSSFELAYNTACSLAEMNKYTEA---EQLLLTARRIGQETLTDDNFAEDDIEI 227 (666)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A---~~~l~~a~~~~~~~~~~~~~~~~~~~~ 227 (666)
...+++++|.+.|..++..+ +.+...|..+..+..+.-+.-.. ...++..+...+ .
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rft--------------D 245 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT--------------D 245 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCc--------------H
Confidence 78999999999998887543 45666676666665554433222 233444444442 2
Q ss_pred hhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhh-----------hcc--C------CCChhHHHH
Q 005990 228 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLV-----------ALK--G------PKDVNDSLK 288 (666)
Q Consensus 228 ~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~-----------~~~--~------~~~~~~a~~ 288 (666)
.+...|..||..|...|+++.|..+|++++..-..-..+. ...+.+. .+. . ..+....+.
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt-~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFT-QIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHH-HHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 3457999999999999999999999999886432111111 0111000 000 0 111122233
Q ss_pred HhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhcccc-CCC----Cc-hHHHHHHHHHH
Q 005990 289 KLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM-FPD----SV-MPLLLQAAVLV 362 (666)
Q Consensus 289 ~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~----~~-~~~~~~a~~~~ 362 (666)
.++.++...+-.. ..+.-+.++. .+..-.-.+-+..|+..+-+..+.+++.. +|. .+ .++...|.+|.
T Consensus 325 ~~e~lm~rr~~~l---NsVlLRQn~~---nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 325 RFESLMNRRPLLL---NSVLLRQNPH---NVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHhccchHH---HHHHHhcCCc---cHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHH
Confidence 3443333311000 0000000000 00000012234455566666666555433 443 22 56677777788
Q ss_pred hhCChhHHHHHHHHHHhhCCC---hhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-------------------Chh
Q 005990 363 RENKAGKAEELLGQFAEKLPD---KSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-------------------MPA 420 (666)
Q Consensus 363 ~~g~~~~A~~~l~~~~~~~p~---~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-------------------~~~ 420 (666)
..|+.+.|..+|+++....-. +...+|..-|.+-++..+++.|+.+++.+...-. +..
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 888888888888877765422 2234566666777777788888888777743211 223
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhc--CC-----h
Q 005990 421 TVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH--GS-----I 493 (666)
Q Consensus 421 ~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~-----~ 493 (666)
+|..++.+....|-++.-...|++.+.+---. + .+..+.|.++..+.-+++|-++|++-+.++ |. +
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaT----P---qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIAT----P---QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC----H---HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence 56666777777777777777777776653111 1 133344555555555555555555555555 22 1
Q ss_pred HHHHHHHHhhccCChhhHHHH
Q 005990 494 EALVGLVTTSAHVDVDKAESY 514 (666)
Q Consensus 494 ~~l~~l~~~~~~~d~~~a~~~ 514 (666)
.-|...+.-|....++.|..+
T Consensus 552 tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 552 TYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHhcCCCHHHHHHH
Confidence 222334444445555555443
No 93
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.55 E-value=3.5e-10 Score=112.80 Aligned_cols=390 Identities=12% Similarity=0.079 Sum_probs=244.9
Q ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhhhccc-----------hhhhHHHHHHHHHhC-------
Q 005990 39 AVKVADQVLSTNPSD-EDAMRCKVVALIKADNIDDALSTIQSSQKFT-----------FDFNYLKAYCLYRQN------- 99 (666)
Q Consensus 39 A~~~~~~~l~~~p~~-~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~~a~~~~~~g------- 99 (666)
.-.++...+...++. ...|..++.-|++.|.|+.|..+|+++.... ..+.|+.-.+-.+++
T Consensus 232 vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~ 311 (835)
T KOG2047|consen 232 VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESG 311 (835)
T ss_pred HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 334556666677654 5678889999999999999999999984321 122233222222222
Q ss_pred C------HHHHHH----------------HHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCChhH------
Q 005990 100 R------LDEALE----------------SLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQK-SKIDSLE------ 150 (666)
Q Consensus 100 ~------~~~A~~----------------~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~------ 150 (666)
+ ++-... ++.+.|.+...|+.... +..|+..+-+..|.+++. .+|....
T Consensus 312 n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~L 389 (835)
T KOG2047|consen 312 NEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTL 389 (835)
T ss_pred ChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhH
Confidence 1 111111 22234555555555444 457889999999999976 4554332
Q ss_pred -HHHHHHHHHcCChhHHHHHHHHhhhcC----CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhc---cCCCCCh
Q 005990 151 -INFVAGLISAGRASEVQKTLDSLRVKA----TSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETL---TDDNFAE 222 (666)
Q Consensus 151 -~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~---~~~~~~~ 222 (666)
+.++..|-..|+.+.|..+|+++...+ .+-..+|.+.|..-+...+++.|+.++++|...-.... -.+..+.
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 888999999999999999999998754 23467888999999999999999999999987654311 0111112
Q ss_pred hhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhh
Q 005990 223 DDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQ 302 (666)
Q Consensus 223 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 302 (666)
...-.....+|..++++....|-++.-..+|++++.+....+.
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq------------------------------------- 512 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ------------------------------------- 512 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH-------------------------------------
Confidence 1111223367888889999999999999999999876543321
Q ss_pred hhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCC--CCchHHHHHH---HHHHhhCChhHHHHHHHHH
Q 005990 303 LARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFP--DSVMPLLLQA---AVLVRENKAGKAEELLGQF 377 (666)
Q Consensus 303 ~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~a---~~~~~~g~~~~A~~~l~~~ 377 (666)
+..|.|..+-...-++++.+.+++.+..++ .-.++|...- ..-+...+.+.|..+|+++
T Consensus 513 ----------------ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 513 ----------------IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred ----------------HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 224446666666667777777777777653 3333332221 1222234577777888888
Q ss_pred HhhCCC-hhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCCChhHHHHHHHHHHH-----cCChhHHHHHHHHHHHHHHH
Q 005990 378 AEKLPD-KSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKER-----AGDIDGAAAVLDSAIKWWLN 451 (666)
Q Consensus 378 ~~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~l~~a~~~~~~ 451 (666)
++..|. +...+++..|.+-..-|-...|+.+|+++...-+ ++-...+-.+|.. -| ...-..+|++|++..|+
T Consensus 577 L~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~-~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~ 654 (835)
T KOG2047|consen 577 LDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK-EAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPD 654 (835)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCCh
Confidence 777663 2333555566666667777777888877644332 1112222222221 12 33445677777776533
Q ss_pred hccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhc
Q 005990 452 AMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 490 (666)
Q Consensus 452 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 490 (666)
.....+....+.+-...|..+.|..+|...-++.
T Consensus 655 -----~~~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 655 -----SKAREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred -----HHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 2223344456777777777887777777766654
No 94
>PLN02789 farnesyltranstransferase
Probab=99.54 E-value=3.2e-12 Score=124.44 Aligned_cols=217 Identities=9% Similarity=0.022 Sum_probs=176.0
Q ss_pred HhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhhhccch---hhhHHHHHHHHHhCCH--HH
Q 005990 30 HIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKAD-NIDDALSTIQSSQKFTF---DFNYLKAYCLYRQNRL--DE 103 (666)
Q Consensus 30 ~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~---~~~~~~a~~~~~~g~~--~~ 103 (666)
+...+.+++|+..+.++|.++|.+..+|+.++.++..+| ++++++..++++...++ .++..++.++.++|+. ++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 345678999999999999999999999999999999999 68999999999976654 5788888889888873 56
Q ss_pred HHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHc---CCh----hHHHHHH
Q 005990 104 ALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISA---GRA----SEVQKTL 170 (666)
Q Consensus 104 A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~---g~~----~~A~~~~ 170 (666)
++.++++ .|++..+|..++.++...|+++++++.+.++|+.+|.+.. .+.+.++... |.+ ++++.+.
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 6666654 7889999999999999999999999999999999998877 5555555544 333 4678888
Q ss_pred HHhhhcCCChHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcC--
Q 005990 171 DSLRVKATSSFELAYNTACSLAE----MNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLG-- 244 (666)
Q Consensus 171 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-- 244 (666)
.+++..+|++..+|+.++.++.. .++..+|+..+.+++..++.+ ..+.-.|+.+|....
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s---------------~~al~~l~d~~~~~~~~ 271 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH---------------VFALSDLLDLLCEGLQP 271 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc---------------HHHHHHHHHHHHhhhcc
Confidence 89999999999999999999988 456677988888887766432 247777888887532
Q ss_pred ----------------ChHHHHHHHHHHHhhCC
Q 005990 245 ----------------NTQEAFGAYTDIIKRNL 261 (666)
Q Consensus 245 ----------------~~~eA~~~~~~~l~~~~ 261 (666)
..++|..+|+.+-+.+|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 272 TAEFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred chhhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 23667777777755565
No 95
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=2.6e-10 Score=108.06 Aligned_cols=297 Identities=13% Similarity=0.108 Sum_probs=216.5
Q ss_pred hHHHHHHHHHhCCHHHHHHHHHhcCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH---HHHHHHHHHc
Q 005990 88 NYLKAYCLYRQNRLDEALESLKIQEN----NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE---INFVAGLISA 160 (666)
Q Consensus 88 ~~~~a~~~~~~g~~~~A~~~l~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~l~~~~~~~ 160 (666)
....|..-+..|+|..|+..+.+..+ ....+..-|....++|+++.|-.++.++-+..+++.- +..+.++...
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 34455556678999999999987332 3455667788899999999999999999877444433 7788889999
Q ss_pred CChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHH
Q 005990 161 GRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQ 240 (666)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 240 (666)
|++..|...+.++....|.+++++.....+|+..|+|.+...++.+..+..-- ++++. .-+-+.++.
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l-------~~~e~-----~~le~~a~~- 233 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL-------SDEEA-----ARLEQQAWE- 233 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC-------ChHHH-----HHHHHHHHH-
Confidence 99999999999999999999999999999999999999999998887765521 12222 011111111
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHH-HHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHH
Q 005990 241 QLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSL-KKLDRIKEKDMQNFQLARVLDLRLSPKQREAI 319 (666)
Q Consensus 241 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~-~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~ 319 (666)
.+++++. ++++. +.+ ..++++.. ++ .....+
T Consensus 234 ----------glL~q~~--~~~~~--------------------~gL~~~W~~~pr--------------~l--r~~p~l 265 (400)
T COG3071 234 ----------GLLQQAR--DDNGS--------------------EGLKTWWKNQPR--------------KL--RNDPEL 265 (400)
T ss_pred ----------HHHHHHh--ccccc--------------------hHHHHHHHhccH--------------Hh--hcChhH
Confidence 0111111 11110 110 01110000 00 000112
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHc
Q 005990 320 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA 399 (666)
Q Consensus 320 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~ 399 (666)
....+.-+...|..++|.+++.+.++..-+.. +... .-...-++...=++..++.+..+|+++. ++..+++++.+.
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~-L~~tLG~L~~k~ 341 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPL-LLSTLGRLALKN 341 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHH--HhhcCCCCchHHHHHHHHHHHhCCCChh-HHHHHHHHHHHh
Confidence 33446778899999999999999988755443 2221 2235678888899999999999999774 999999999999
Q ss_pred CChhHHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 005990 400 NHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWW 449 (666)
Q Consensus 400 g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~ 449 (666)
+.|.+|...|+.++...++...+..++.++.+.|+..+|.+.+++++...
T Consensus 342 ~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 342 KLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred hHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999988889999999999999999999999998654
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.45 E-value=7.8e-12 Score=119.01 Aligned_cols=184 Identities=15% Similarity=0.139 Sum_probs=117.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCCChH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKATSSF---ELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEI 227 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 227 (666)
+.++..+...|++++|+..|++++...|+++ .+++.+|.++...|++++|+..|+++++..|++.
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~------------ 104 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP------------ 104 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC------------
Confidence 5555555555556666665655555555443 5778888889999999999999999988886431
Q ss_pred hhhhHHHHHHHHHHHc--------CChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhh
Q 005990 228 ELAPIAVQLAYVQQLL--------GNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQ 299 (666)
Q Consensus 228 ~~~~~~~~la~~~~~~--------g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~ 299 (666)
....+++.+|.++... |++++|+..|++++..+|.+.... .++..+..+..
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~-----------------~a~~~~~~~~~---- 163 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP-----------------DAKKRMDYLRN---- 163 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH-----------------HHHHHHHHHHH----
Confidence 1224678888888776 889999999999999999875322 11111100000
Q ss_pred hhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCc---hHHHHHHHHHHhhCChhHHHHHHHH
Q 005990 300 NFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQ 376 (666)
Q Consensus 300 ~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~l~~ 376 (666)
.......+.+.+++..|++.+|+..+..++..+|+++ .+++.++.++...|++++|+.+++.
T Consensus 164 ---------------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 164 ---------------RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred ---------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0000112345666677777777777777766666543 5666666777777777777776666
Q ss_pred HHhhCC
Q 005990 377 FAEKLP 382 (666)
Q Consensus 377 ~~~~~p 382 (666)
+...+|
T Consensus 229 l~~~~~ 234 (235)
T TIGR03302 229 LGANYP 234 (235)
T ss_pred HHhhCC
Confidence 655544
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.45 E-value=2.3e-10 Score=131.89 Aligned_cols=377 Identities=12% Similarity=-0.009 Sum_probs=256.4
Q ss_pred CCcHHHHHHHH-HHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc----cchhhhHHH
Q 005990 17 PPPIEDLFTSL-NRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQK----FTFDFNYLK 91 (666)
Q Consensus 17 p~~~~~l~~~~-~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~ 91 (666)
|.....+...+ ..+...|++.+|+..+..+-.. +.-.......+..+...|++..+...+..+.. ..+......
T Consensus 337 ~~~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~ 415 (903)
T PRK04841 337 AQELPELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQ 415 (903)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHH
Confidence 44444554444 4456788998888766544111 11133445567778889999988888877621 234555677
Q ss_pred HHHHHHhCCHHHHHHHHHhc----CC---------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-------H
Q 005990 92 AYCLYRQNRLDEALESLKIQ----EN---------NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-------I 151 (666)
Q Consensus 92 a~~~~~~g~~~~A~~~l~~~----~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~ 151 (666)
+.+++..|++++|...+... .. ...+...++.++...|++++|...+++++...+.... .
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 88889999999998888651 11 1234556788899999999999999999874333211 5
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhcCCC------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhH
Q 005990 152 NFVAGLISAGRASEVQKTLDSLRVKATS------SFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDI 225 (666)
Q Consensus 152 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 225 (666)
.++.++...|++++|...+++++..... ...++.++|.++...|++++|..++++++.+........ .
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~--~---- 569 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ--L---- 569 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc--c----
Confidence 6777888899999999999988753221 123567889999999999999999999999875421100 0
Q ss_pred hhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhH
Q 005990 226 EIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLAR 305 (666)
Q Consensus 226 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 305 (666)
.....++..+|.++...|++++|...+.+++........ .
T Consensus 570 -~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~----------------~----------------------- 609 (903)
T PRK04841 570 -PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP----------------Q----------------------- 609 (903)
T ss_pred -cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc----------------h-----------------------
Confidence 011234667899999999999999999988754321100 0
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCC---chHH----HHHHHHHHhhCChhHHHHHHHHHH
Q 005990 306 VLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS---VMPL----LLQAAVLVRENKAGKAEELLGQFA 378 (666)
Q Consensus 306 ~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~----~~~a~~~~~~g~~~~A~~~l~~~~ 378 (666)
.......+.+.++...|++++|...+..+....... .... ......+...|+.+.|...+....
T Consensus 610 ---------~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 680 (903)
T PRK04841 610 ---------QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAP 680 (903)
T ss_pred ---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcC
Confidence 000112334777888999999998888875432221 1111 112234455789999988887755
Q ss_pred hhCCChh---HHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 005990 379 EKLPDKS---KIILLARAQVAAAANHPFIAAESLAKIPDIQH-------MPATVATLVALKERAGDIDGAAAVLDSAIKW 448 (666)
Q Consensus 379 ~~~p~~~---~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~ 448 (666)
...+... ...+..++.++...|++++|...|++++.... ...+...++.++...|+.++|...|.++++.
T Consensus 681 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 681 KPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4222211 11245788889999999999999999876432 1234577899999999999999999999987
Q ss_pred H
Q 005990 449 W 449 (666)
Q Consensus 449 ~ 449 (666)
.
T Consensus 761 a 761 (903)
T PRK04841 761 A 761 (903)
T ss_pred h
Confidence 6
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=4.2e-11 Score=108.31 Aligned_cols=385 Identities=16% Similarity=0.087 Sum_probs=253.7
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc---chhhhHHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKF---TFDFNYLK 91 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~ 91 (666)
+.|.+...+-..+.+++...+|..|..+|++.-...|......+..+..+++.+.|.+|+.+...+... ...+.-..
T Consensus 39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLq 118 (459)
T KOG4340|consen 39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQ 118 (459)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 567788899999999999999999999999999999998888888999999999999999999988432 23444466
Q ss_pred HHHHHHhCCHHHHHHHHHhcC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHH
Q 005990 92 AYCLYRQNRLDEALESLKIQE--NNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQ 167 (666)
Q Consensus 92 a~~~~~~g~~~~A~~~l~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~ 167 (666)
+-+.|..+++..+..++++.| ++.......|-+.++.|++++|+.-|+.+++...-..- ++++.+.++.++++.|+
T Consensus 119 aAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasAL 198 (459)
T KOG4340|consen 119 AAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASAL 198 (459)
T ss_pred HHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHH
Confidence 778899999999999999977 37788899999999999999999999999887554444 89999999999999999
Q ss_pred HHHHHhhhc----CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHc
Q 005990 168 KTLDSLRVK----ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLL 243 (666)
Q Consensus 168 ~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 243 (666)
.....+++. +|+-. +|..- .| .+ ......-+.+. ...+..++...+.|+++.
T Consensus 199 k~iSEIieRG~r~HPElg-----IGm~t--eg-iD--vrsvgNt~~lh--------------~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPELG-----IGMTT--EG-ID--VRSVGNTLVLH--------------QSALVEAFNLKAAIEYQL 254 (459)
T ss_pred HHHHHHHHhhhhcCCccC-----cccee--cc-Cc--hhcccchHHHH--------------HHHHHHHhhhhhhhhhhc
Confidence 988877653 33211 11100 00 00 00000001111 122335667778889999
Q ss_pred CChHHHHHHHHHHHhhCCCCH-hHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHH
Q 005990 244 GNTQEAFGAYTDIIKRNLADE-SSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYAN 322 (666)
Q Consensus 244 g~~~eA~~~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~ 322 (666)
|+++.|.+.+..+- |... ....+...|+...+...++.+..+++.-+++..+ .+ .....|
T Consensus 255 ~n~eAA~eaLtDmP---PRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-------------fP---~ETFAN 315 (459)
T KOG4340|consen 255 RNYEAAQEALTDMP---PRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-------------FP---PETFAN 315 (459)
T ss_pred ccHHHHHHHhhcCC---CcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-------------CC---hHHHHH
Confidence 99999987776542 2211 1122445555555555555566666644443321 11 123356
Q ss_pred HHHHHHHcCChHHHHHHHHhccccCCCCc------hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHH
Q 005990 323 RVLLLLHANKMDQARELVAALPDMFPDSV------MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 396 (666)
Q Consensus 323 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~ 396 (666)
+..+++...-|+-|..++.+- |+.. ..+-++-.+-...-..++|.+-+..+....-+ .+.-..+++.
T Consensus 316 lLllyCKNeyf~lAADvLAEn----~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~---kLRklAi~vQ 388 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAEN----AHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTE---KLRKLAIQVQ 388 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhC----cchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 678888888888887776543 3322 11122222223355677777777665443222 1222233333
Q ss_pred HH--cCC---hhHHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 005990 397 AA--ANH---PFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLN 451 (666)
Q Consensus 397 ~~--~g~---~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~ 451 (666)
.. +.+ ...|++.|+..+++. -.++...+++|.+..++..+.+.|...++...+
T Consensus 389 e~r~~~dd~a~R~ai~~Yd~~LE~Y--LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~e 446 (459)
T KOG4340|consen 389 EARHNRDDEAIRKAVNEYDETLEKY--LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCND 446 (459)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccccccHHHHHHHHHHHhhhcc
Confidence 22 221 223334444443322 125677899999999999999999999888743
No 99
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=6.2e-10 Score=105.55 Aligned_cols=302 Identities=13% Similarity=0.091 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCC-ChHHHHHHHHHHHHH
Q 005990 117 TMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKAT-SSFELAYNTACSLAE 193 (666)
Q Consensus 117 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~ 193 (666)
....-|-.-+..|+|..|.....+.-+..+.... +.-+.+--..|+++.+-.++.++.+..+ ++..+....+.+...
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 3445566667788999998888876544433333 2223344458888888888888877633 344467777888888
Q ss_pred hcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhh
Q 005990 194 MNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNN 273 (666)
Q Consensus 194 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~ 273 (666)
.|++..|...+.+++...|... .+......+|+..|++.+...++.++-+..--+..
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~---------------~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~-------- 222 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHP---------------EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDE-------- 222 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCCh---------------HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChH--------
Confidence 8999999999988888885531 46666778888999998888888877765442221
Q ss_pred hhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchH
Q 005990 274 LVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMP 353 (666)
Q Consensus 274 l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 353 (666)
-...+++. .+.+...-....+..+.-..+++.....--.++.+
T Consensus 223 ------------e~~~le~~-------------------------a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l 265 (400)
T COG3071 223 ------------EAARLEQQ-------------------------AWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPEL 265 (400)
T ss_pred ------------HHHHHHHH-------------------------HHHHHHHHHhccccchHHHHHHHhccHHhhcChhH
Confidence 11111100 00000000111122222234555555545566778
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHc
Q 005990 354 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA 432 (666)
Q Consensus 354 ~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~ 432 (666)
....+.-+...|+.++|.++++..++..-+.. +... .-...-++...=++.+++.+...| +|.++.+||.+|.+.
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~ 341 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKN 341 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHH--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Confidence 88888889999999999999999999877633 1111 123467888888888888888888 999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhc
Q 005990 433 GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 490 (666)
Q Consensus 433 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 490 (666)
+.|.+|..+|+.++..-++. .-+..+|.++.+.|+..+|.+++++++...
T Consensus 342 ~~w~kA~~~leaAl~~~~s~--------~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 342 KLWGKASEALEAALKLRPSA--------SDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred hHHHHHHHHHHHHHhcCCCh--------hhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999998875322 145678999999999999999999988543
No 100
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.41 E-value=8.3e-11 Score=126.54 Aligned_cols=255 Identities=9% Similarity=-0.010 Sum_probs=169.1
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYC 94 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~ 94 (666)
.+|.+..++...+..+...+++++|+.+|+..++.+|+...+++.+|.++.+.+++.++..+ .+..
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------ 91 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID------------ 91 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh------------
Confidence 56778888888888888888888888888888888888888888888888888887766655 2211
Q ss_pred HHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHH
Q 005990 95 LYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDS 172 (666)
Q Consensus 95 ~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~ 172 (666)
+.-...++ .+++.|...+...+++.. ..+|.+|-.+|+.++|...|++
T Consensus 92 -----------------------------~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer 141 (906)
T PRK14720 92 -----------------------------SFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWER 141 (906)
T ss_pred -----------------------------hcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 11111122 222222222222233222 5566666666666666666667
Q ss_pred hhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHH
Q 005990 173 LRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGA 252 (666)
Q Consensus 173 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~ 252 (666)
+++.+|+++.++.++|..|... ++++|++++.+|+... ....++.++.++
T Consensus 142 ~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~-----------------------------i~~kq~~~~~e~ 191 (906)
T PRK14720 142 LVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF-----------------------------IKKKQYVGIEEI 191 (906)
T ss_pred HHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH-----------------------------HhhhcchHHHHH
Confidence 7777788888999999998888 8999999988886643 344578888889
Q ss_pred HHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCC
Q 005990 253 YTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANK 332 (666)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~ 332 (666)
+.+++..+|.+...+....+.+....+. .....++..+-..|...++
T Consensus 192 W~k~~~~~~~d~d~f~~i~~ki~~~~~~---------------------------------~~~~~~~~~l~~~y~~~~~ 238 (906)
T PRK14720 192 WSKLVHYNSDDFDFFLRIERKVLGHREF---------------------------------TRLVGLLEDLYEPYKALED 238 (906)
T ss_pred HHHHHhcCcccchHHHHHHHHHHhhhcc---------------------------------chhHHHHHHHHHHHhhhhh
Confidence 9999988888765443333222221111 1111122333566778899
Q ss_pred hHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHh
Q 005990 333 MDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAE 379 (666)
Q Consensus 333 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~ 379 (666)
|++++.+++.++...|.+..+...++.+|. ++|.. ...|+.+++
T Consensus 239 ~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~ 282 (906)
T PRK14720 239 WDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLK 282 (906)
T ss_pred hhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHH
Confidence 999999999999999999888887777665 44433 344444443
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.40 E-value=4e-11 Score=128.29 Aligned_cols=157 Identities=15% Similarity=0.042 Sum_probs=134.3
Q ss_pred HHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHH
Q 005990 93 YCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTL 170 (666)
Q Consensus 93 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~ 170 (666)
.+..-...+.+++.+....+.+..++.+||.+..+.|.+++|..+++.+++..|++.. .+++.++.+.+++++|+..+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~ 143 (694)
T PRK15179 64 AVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEI 143 (694)
T ss_pred hhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3333344556667777778888999999999999999999999999999999999888 89999999999999999999
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHH
Q 005990 171 DSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAF 250 (666)
Q Consensus 171 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~ 250 (666)
++++...|++.+.++.+|.++...|++++|+.+|++++...+. ...+++.+|.++...|+.++|.
T Consensus 144 ~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~---------------~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 144 ELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE---------------FENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC---------------cHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999999999985532 2358999999999999999999
Q ss_pred HHHHHHHhhCCCCH
Q 005990 251 GAYTDIIKRNLADE 264 (666)
Q Consensus 251 ~~~~~~l~~~~~~~ 264 (666)
..|++++.......
T Consensus 209 ~~~~~a~~~~~~~~ 222 (694)
T PRK15179 209 DVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHHhhCcch
Confidence 99999988765443
No 102
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=4.8e-11 Score=105.76 Aligned_cols=181 Identities=20% Similarity=0.209 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHH
Q 005990 319 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA 398 (666)
Q Consensus 319 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~ 398 (666)
++-..+...+..|+.+-|..+++++...+|++.....+.|..+...|.+++|+++|+.+++.+|.+.. .+-.-..+...
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v-~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV-IRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhH-HHHHHHHHHHH
Confidence 34444677889999999999999999999999999999999999999999999999999999999766 55555667778
Q ss_pred cCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCC---
Q 005990 399 ANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHG--- 474 (666)
Q Consensus 399 ~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 474 (666)
+|+.-+|++.+...++..+ +++.|..++.+|...|++++|.-++++.+=..|.++ .++..+|++++-.|
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~-------l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP-------LYFQRLAEVLYTQGGAE 205 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH-------HHHHHHHHHHHHHhhHH
Confidence 8999999999999999888 999999999999999999999999999987654332 36678888887665
Q ss_pred ChhhHHHHHHHHHHhcC-ChHHHHHHHHhhccCC
Q 005990 475 REEDASHLFEELVKTHG-SIEALVGLVTTSAHVD 507 (666)
Q Consensus 475 ~~~~A~~~~~~~l~~~p-~~~~l~~l~~~~~~~d 507 (666)
+..-|.++|+++++++| +..++-++..+.++..
T Consensus 206 N~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 206 NLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 56689999999999999 4667777777665443
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.37 E-value=1.6e-11 Score=105.61 Aligned_cols=117 Identities=16% Similarity=0.102 Sum_probs=100.1
Q ss_pred HHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhh
Q 005990 135 VEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQET 214 (666)
Q Consensus 135 ~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~ 214 (666)
..+|+++++.+|++. .+++.++...|++++|+..|+.++..+|.+.++++++|.++...|++++|+..|++++.++|..
T Consensus 13 ~~~~~~al~~~p~~~-~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 13 EDILKQLLSVDPETV-YASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHHcCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 356888888888764 5678888889999999999999999999999999999999999999999999999999988542
Q ss_pred ccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHH
Q 005990 215 LTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSF 267 (666)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~ 267 (666)
..+++++|.++..+|++++|+..|..++...|++...+
T Consensus 92 ---------------~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 92 ---------------PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred ---------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 25889999999999999999999999999999886544
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.35 E-value=1.6e-10 Score=105.05 Aligned_cols=145 Identities=12% Similarity=0.110 Sum_probs=115.1
Q ss_pred HHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHH
Q 005990 61 VVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVE 136 (666)
Q Consensus 61 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~ 136 (666)
+..|+..|+++......+.... +.. .+...++.++++..++. .|++...|..+|.+|...|++++|+.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~--~~~------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~ 94 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD--PLH------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALL 94 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC--ccc------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3456777777665444322210 000 00114445555555544 78899999999999999999999999
Q ss_pred HHHHHHhhCCChhH--HHHHHHH-HHcCC--hhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 005990 137 FYQKLQKSKIDSLE--INFVAGL-ISAGR--ASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIG 211 (666)
Q Consensus 137 ~~~~~l~~~p~~~~--~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 211 (666)
.|++++...|++.+ .+++.++ ...|+ +++|...+++++..+|++..+++++|.+++..|++++|+.+|++++++.
T Consensus 95 a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 95 AYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999988 8888875 66777 5999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 005990 212 QE 213 (666)
Q Consensus 212 ~~ 213 (666)
+.
T Consensus 175 ~~ 176 (198)
T PRK10370 175 SP 176 (198)
T ss_pred CC
Confidence 64
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.34 E-value=8.3e-11 Score=113.18 Aligned_cols=225 Identities=20% Similarity=0.203 Sum_probs=147.7
Q ss_pred HHHHHhhhccHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhh------------------------
Q 005990 26 SLNRHIERSEFEQAVKVADQVLSTNPS-DEDAMRCKVVALIKADNIDDALSTIQSS------------------------ 80 (666)
Q Consensus 26 ~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~a~~~~~~~~~~~g~~~~A~~~~~~~------------------------ 80 (666)
.++.++-.|+|..++..++ ....++. ..+....+.++++.+|+++..+..+...
T Consensus 7 ~vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHH
Confidence 3445555666666665555 2233322 2445555666666666666544433222
Q ss_pred -------hcc-----chhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCh
Q 005990 81 -------QKF-----TFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDS 148 (666)
Q Consensus 81 -------~~~-----~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 148 (666)
... ++.+.+..|.++...|++++|++++... .+..+..+..+++++.++++.|...++.+.+.+.|.
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~ 164 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDS 164 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcH
Confidence 100 1223445566777788888888888776 567788888889999999999998888887776666
Q ss_pred hHHHHHHHHHH--cC--ChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhh
Q 005990 149 LEINFVAGLIS--AG--RASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDD 224 (666)
Q Consensus 149 ~~~~l~~~~~~--~g--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 224 (666)
.-++++.++.. .| .+.+|.-+|+.+....+.++.++..+|.+++.+|+|++|...+.+++..++. +
T Consensus 165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~----------~ 234 (290)
T PF04733_consen 165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN----------D 234 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC----------H
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC----------C
Confidence 55555554443 33 5888999998888777778888888999999999999999998888776633 2
Q ss_pred HhhhhhhHHHHHHHHHHHcCCh-HHHHHHHHHHHhhCCCCHhHH
Q 005990 225 IEIELAPIAVQLAYVQQLLGNT-QEAFGAYTDIIKRNLADESSF 267 (666)
Q Consensus 225 ~~~~~~~~~~~la~~~~~~g~~-~eA~~~~~~~l~~~~~~~~~~ 267 (666)
..+..+++.+...+|+. +.+.+++.++...+|.++.+.
T Consensus 235 -----~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 235 -----PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp -----HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred -----HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 14677888888888888 556677777777788775433
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.33 E-value=9.3e-11 Score=106.64 Aligned_cols=153 Identities=8% Similarity=-0.010 Sum_probs=126.8
Q ss_pred HHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHH
Q 005990 91 KAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQK 168 (666)
Q Consensus 91 ~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~ 168 (666)
-+..|+..|+++......+..-+.. .-+...++.++++..+++.+..+|++.+ ..+|.+|...|++++|+.
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~-------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~ 94 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL-------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALL 94 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc-------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3456788999887655442211100 0111267789999999999999999998 999999999999999999
Q ss_pred HHHHhhhcCCChHHHHHHHHHHH-HHhcC--HHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCC
Q 005990 169 TLDSLRVKATSSFELAYNTACSL-AEMNK--YTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGN 245 (666)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 245 (666)
.|++++...|++.++++++|.++ ...|+ +++|..+|+++++.+++. ..+++.+|.++...|+
T Consensus 95 a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~---------------~~al~~LA~~~~~~g~ 159 (198)
T PRK10370 95 AYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE---------------VTALMLLASDAFMQAD 159 (198)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC---------------hhHHHHHHHHHHHcCC
Confidence 99999999999999999999975 77787 599999999999999542 2599999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCHh
Q 005990 246 TQEAFGAYTDIIKRNLADES 265 (666)
Q Consensus 246 ~~eA~~~~~~~l~~~~~~~~ 265 (666)
+++|+..|+++++..|.+..
T Consensus 160 ~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 160 YAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHHHHhhCCCCcc
Confidence 99999999999999887653
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.33 E-value=4e-11 Score=103.17 Aligned_cols=125 Identities=10% Similarity=0.016 Sum_probs=98.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHH
Q 005990 40 VKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATML 119 (666)
Q Consensus 40 ~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~ 119 (666)
..+++++++.+|++ ++.+|.++...|++++|+..|..+... .|.+..+++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~---------------------------~P~~~~a~~ 62 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMA---------------------------QPWSWRAHI 62 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc---------------------------CCCcHHHHH
Confidence 35677777777754 455677777777777777777776333 466778888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHh
Q 005990 120 LKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEM 194 (666)
Q Consensus 120 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 194 (666)
.+|.++...|++++|+..|++++..+|++.. .++|.++...|++++|+..|+.++...|++++.+.+++.+....
T Consensus 63 ~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 63 ALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 8888888888888888888888888888777 88888888888888888888888888888888888877766543
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.32 E-value=2.1e-10 Score=102.97 Aligned_cols=178 Identities=22% Similarity=0.190 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChh
Q 005990 37 EQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPA 116 (666)
Q Consensus 37 ~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~ 116 (666)
..+...+-.....+|+|..+ ..+...++..|+-+.++.+..++.. ..+.+..
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~---------------------------~~~~d~~ 101 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAI---------------------------AYPKDRE 101 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhc---------------------------cCcccHH
Confidence 33666666667788988888 8888888888888888887777521 1345667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHh
Q 005990 117 TMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEM 194 (666)
Q Consensus 117 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 194 (666)
+.+.+|...++.|+|.+|+..++++....|++.+ ..++.+|.+.|++++|...|.+++++.|..+.+..|+|..++-.
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence 7777999999999999999999999999999888 88899999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005990 195 NKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDII 257 (666)
Q Consensus 195 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l 257 (666)
|+++.|..++..+....+. +. .+..+++.+...+|++.+|..+-.+-+
T Consensus 182 gd~~~A~~lll~a~l~~~a----------d~-----~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 182 GDLEDAETLLLPAYLSPAA----------DS-----RVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred CCHHHHHHHHHHHHhCCCC----------ch-----HHHHHHHHHHhhcCChHHHHhhccccc
Confidence 9999999999998877632 22 588899999999999999987765443
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.31 E-value=1.5e-10 Score=123.96 Aligned_cols=128 Identities=15% Similarity=0.035 Sum_probs=108.9
Q ss_pred hhhhHHHHHHHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHH
Q 005990 85 FDFNYLKAYCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLI 158 (666)
Q Consensus 85 ~~~~~~~a~~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~ 158 (666)
.+.++.+|.+...+|++++|+.+++. .|++..++..++.++.+.+++++|+..+++++...|++.. ..++.++.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 34444444444444444444444443 7889999999999999999999999999999999999988 88999999
Q ss_pred HcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhh
Q 005990 159 SAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQ 212 (666)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 212 (666)
..|++++|+.+|++++..+|++..+++.+|.++...|+.++|...|++++....
T Consensus 166 ~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 166 EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999873
No 110
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=3.6e-08 Score=101.26 Aligned_cols=296 Identities=17% Similarity=0.148 Sum_probs=162.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCC--ChhHHHHHHHHHHHcCCHHHHHH
Q 005990 59 CKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQEN--NPATMLLKSQILYRSGEMDACVE 136 (666)
Q Consensus 59 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~ 136 (666)
..++..+.+|..++|+.+|.+..+.+ .+-..|...|.+++|.++.+.... -...++..|+-+...++.+.|++
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHH
Confidence 34556667777777777777763221 223344557777777777765332 34567777777777788888888
Q ss_pred HHHHH----------HhhCCChhH------------HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHh
Q 005990 137 FYQKL----------QKSKIDSLE------------INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEM 194 (666)
Q Consensus 137 ~~~~~----------l~~~p~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 194 (666)
+|++. +..+|...+ ...+.-+...|+.+.|+..|..+. -||.+-.+.+-+
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~q 951 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQ 951 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeec
Confidence 87764 112222222 111222222455555555544331 233444444445
Q ss_pred cCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCC------CCHhHHH
Q 005990 195 NKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNL------ADESSFA 268 (666)
Q Consensus 195 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~------~~~~~~~ 268 (666)
|+.++|-.+-++.-.. .+.+.||..|...|++.+|+..|.++-.... .+ . ..
T Consensus 952 Gk~~kAa~iA~esgd~--------------------AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d-~~ 1009 (1416)
T KOG3617|consen 952 GKTDKAARIAEESGDK--------------------AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-D-MK 1009 (1416)
T ss_pred cCchHHHHHHHhcccH--------------------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-C-HH
Confidence 5555544433322111 3889999999999999999999988754321 10 0 00
Q ss_pred HHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhc-----
Q 005990 269 VAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAAL----- 343 (666)
Q Consensus 269 ~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~----- 343 (666)
-...|+..+.+..+...+.+.+++.- .... ....+|...|.+..|+++.=..
T Consensus 1010 d~L~nlal~s~~~d~v~aArYyEe~g-----------------~~~~------~AVmLYHkAGm~~kALelAF~tqQf~a 1066 (1416)
T KOG3617|consen 1010 DRLANLALMSGGSDLVSAARYYEELG-----------------GYAH------KAVMLYHKAGMIGKALELAFRTQQFSA 1066 (1416)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHcc-----------------hhhh------HHHHHHHhhcchHHHHHHHHhhcccHH
Confidence 11334444444444444444443221 0111 1144566667776665543111
Q ss_pred -----cccCCCC-chHHHHHHHHHHhhCChhHHHHHHHH------HHhhC----------------CC--------hhHH
Q 005990 344 -----PDMFPDS-VMPLLLQAAVLVRENKAGKAEELLGQ------FAEKL----------------PD--------KSKI 387 (666)
Q Consensus 344 -----~~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~------~~~~~----------------p~--------~~~~ 387 (666)
...+|++ +.++..-+..++...+|++|+.++-. ++... |. ....
T Consensus 1067 L~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~ 1146 (1416)
T KOG3617|consen 1067 LDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQ 1146 (1416)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHH
Confidence 1234553 34444445666677778887765543 22211 11 1234
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhcC
Q 005990 388 ILLARAQVAAAANHPFIAAESLAKI 412 (666)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~l~~~ 412 (666)
++-.++.++.++|.|..|.+-|.++
T Consensus 1147 vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1147 VLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHhccchHHHHHHHhhh
Confidence 6777889999999999888887776
No 111
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=2e-09 Score=95.64 Aligned_cols=160 Identities=19% Similarity=0.091 Sum_probs=135.0
Q ss_pred HHHHHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChh
Q 005990 91 KAYCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRAS 164 (666)
Q Consensus 91 ~a~~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~ 164 (666)
...+....|+.+.|..++++ .|.+..+..+.|..+-..|++++|+++|+.+++.+|.+.. ..-.+++-.+|+.-
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH
Confidence 34455566777777776655 6788999999999999999999999999999999998877 44455566788889
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcC
Q 005990 165 EVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLG 244 (666)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 244 (666)
+|++.+...++..+.+.++|..++.+|+..|+|++|.-+|++++-+.|..+ ..+..+|.+++-+|
T Consensus 138 ~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~---------------l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 138 EAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP---------------LYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999986431 46677888888776
Q ss_pred ---ChHHHHHHHHHHHhhCCCCHh
Q 005990 245 ---NTQEAFGAYTDIIKRNLADES 265 (666)
Q Consensus 245 ---~~~eA~~~~~~~l~~~~~~~~ 265 (666)
++.-|.++|.++++++|.+..
T Consensus 203 g~eN~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 203 GAENLELARKYYERALKLNPKNLR 226 (289)
T ss_pred hHHHHHHHHHHHHHHHHhChHhHH
Confidence 678899999999999995543
No 112
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.27 E-value=2.8e-10 Score=107.53 Aligned_cols=230 Identities=13% Similarity=0.017 Sum_probs=132.4
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhhhcc---------ch
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSD----EDAMRCKVVALIKADNIDDALSTIQSSQKF---------TF 85 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~---------~~ 85 (666)
+--.|-..+..+++.|++...+.+|+.+++..-.| ..+|..+|.+|+-+++|++|+++-..-..+ ..
T Consensus 16 SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA 95 (639)
T KOG1130|consen 16 SCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA 95 (639)
T ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence 34566778889999999999999999999998776 345667899999999999999875443111 11
Q ss_pred hhhHHHHHHHHHhCCHHHHHHHHHhcCC----------ChhHHHHHHHHHHHcCC--------------------HHHHH
Q 005990 86 DFNYLKAYCLYRQNRLDEALESLKIQEN----------NPATMLLKSQILYRSGE--------------------MDACV 135 (666)
Q Consensus 86 ~~~~~~a~~~~~~g~~~~A~~~l~~~~~----------~~~~~~~la~~~~~~g~--------------------~~~A~ 135 (666)
...-.++..+--.|.|++|+.++.+.-+ ...+++.+|.+|...|+ ++.|+
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 2333566777778888888887765211 45677888888877664 22333
Q ss_pred HHHHHHHhhCCChhH--------HHHHHHHHHcCChhHHHHHHHHhhhcCC------ChHHHHHHHHHHHHHhcCHHHHH
Q 005990 136 EFYQKLQKSKIDSLE--------INFVAGLISAGRASEVQKTLDSLRVKAT------SSFELAYNTACSLAEMNKYTEAE 201 (666)
Q Consensus 136 ~~~~~~l~~~p~~~~--------~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~ 201 (666)
++|..-++......+ -+|+..|+-.|+|+.|+...+.-+.+.. ..-.++-|+|.+++-.|+++.|+
T Consensus 176 ~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ 255 (639)
T KOG1130|consen 176 KFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAI 255 (639)
T ss_pred HHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHH
Confidence 333333322111111 3344444445555555544332222110 11224455555555555555555
Q ss_pred HHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005990 202 QLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDII 257 (666)
Q Consensus 202 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l 257 (666)
++|+..+.+..+.- +. ..-+...+.||..|....+++.|+.++.+-+
T Consensus 256 ehYK~tl~LAielg--------~r-~vEAQscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 256 EHYKLTLNLAIELG--------NR-TVEAQSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHHHHHHHHHhc--------ch-hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 55555554442210 00 1112345555555555555555555555443
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.27 E-value=1.6e-09 Score=116.79 Aligned_cols=284 Identities=12% Similarity=0.043 Sum_probs=196.1
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHH
Q 005990 47 LSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILY 126 (666)
Q Consensus 47 l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~ 126 (666)
...+|.+..++..++..+...+++++|+.+.+.. ++..|+...+++.+|.+++
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~---------------------------l~~~P~~i~~yy~~G~l~~ 76 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEH---------------------------LKEHKKSISALYISGILSL 76 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHH---------------------------HHhCCcceehHHHHHHHHH
Confidence 3457888999999999999999999999988865 3336778889999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 005990 127 RSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLT 206 (666)
Q Consensus 127 ~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 206 (666)
+.+++.++..+ .++...+.+. ++ .+.+.+...+...+++-.+++.+|.||-.+|++++|...|++
T Consensus 77 q~~~~~~~~lv--~~l~~~~~~~------------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer 141 (906)
T PRK14720 77 SRRPLNDSNLL--NLIDSFSQNL------------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWER 141 (906)
T ss_pred hhcchhhhhhh--hhhhhccccc------------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99998888777 6655443332 23 333334434444566777999999999999999999999999
Q ss_pred HHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHH
Q 005990 207 ARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDS 286 (666)
Q Consensus 207 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a 286 (666)
++++++. + +.+..++|+.|... +.++|+.++.+++..
T Consensus 142 ~L~~D~~----------n-----~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------------------- 178 (906)
T PRK14720 142 LVKADRD----------N-----PEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------------------- 178 (906)
T ss_pred HHhcCcc----------c-----HHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------------------
Confidence 9999943 2 26999999999999 999999999988743
Q ss_pred HHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHH-HHHhhC
Q 005990 287 LKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAA-VLVREN 365 (666)
Q Consensus 287 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~-~~~~~g 365 (666)
++..+++..+.+++.++....|++...++..-. +....|
T Consensus 179 ----------------------------------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~ 218 (906)
T PRK14720 179 ----------------------------------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE 218 (906)
T ss_pred ----------------------------------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc
Confidence 233446667777777777777777654432211 111111
Q ss_pred ChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHH
Q 005990 366 KAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDS 444 (666)
Q Consensus 366 ~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~ 444 (666)
+.. ....+.-+...|-..++|++++.+|..+++.++ +......++.+|. +.|.. ...|+.
T Consensus 219 -~~~---------------~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee 279 (906)
T PRK14720 219 -FTR---------------LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLED 279 (906)
T ss_pred -cch---------------hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHH
Confidence 111 223455566677777888888888888888887 6556667777775 44433 555555
Q ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC
Q 005990 445 AIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 445 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
.++... .. -...++..|+..|++.+..++.
T Consensus 280 ~l~~s~--l~----------------~~~~~~~~~i~~fek~i~f~~G 309 (906)
T PRK14720 280 YLKMSD--IG----------------NNRKPVKDCIADFEKNIVFDTG 309 (906)
T ss_pred HHHHhc--cc----------------cCCccHHHHHHHHHHHeeecCC
Confidence 554420 00 0112456777777777766665
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.25 E-value=5e-10 Score=100.62 Aligned_cols=164 Identities=14% Similarity=0.184 Sum_probs=145.6
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYC 94 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~ 94 (666)
.+|...+. +.....+...|+-+.++.+..+++..+|.+...+...|...++.|+|.+|+..|.++..+
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----------- 129 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL----------- 129 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----------
Confidence 56666666 788888888999999999999999999999999999999999999999999999998554
Q ss_pred HHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHH
Q 005990 95 LYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDS 172 (666)
Q Consensus 95 ~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~ 172 (666)
.|.+..+|..+|.+|.+.|++++|...|.++++..|.+.. .|++..+.-.|+++.|..++..
T Consensus 130 ----------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 130 ----------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred ----------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHH
Confidence 5678899999999999999999999999999998888776 8999999999999999999999
Q ss_pred hhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 005990 173 LRVKATSSFELAYNTACSLAEMNKYTEAEQLLLT 206 (666)
Q Consensus 173 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 206 (666)
+....+.+..+..|++.+....|++.+|.....+
T Consensus 194 a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 194 AYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 8888888888999999999999999999877544
No 115
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.25 E-value=4.4e-10 Score=108.20 Aligned_cols=84 Identities=21% Similarity=0.171 Sum_probs=34.5
Q ss_pred hHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCCh-hHHHHHHhc
Q 005990 333 MDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHP-FIAAESLAK 411 (666)
Q Consensus 333 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~-~~A~~~l~~ 411 (666)
+.+|.-+|+++...++.++..+..+|.+++..|++++|...+++++..+|.++. ++..++.+....|+. +.+.+++.+
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d-~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD-TLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH-HHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH-HHHHHHHHHHHhCCChhHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444332 344444444444444 333344444
Q ss_pred CcCCCC
Q 005990 412 IPDIQH 417 (666)
Q Consensus 412 ~~~~~~ 417 (666)
+...+|
T Consensus 262 L~~~~p 267 (290)
T PF04733_consen 262 LKQSNP 267 (290)
T ss_dssp CHHHTT
T ss_pred HHHhCC
Confidence 444444
No 116
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.20 E-value=5.8e-10 Score=105.47 Aligned_cols=301 Identities=12% Similarity=0.025 Sum_probs=181.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH------HHHHHHHHHcCChhHHHHHHHH------hhhcCCChHHHHHH
Q 005990 119 LLKSQILYRSGEMDACVEFYQKLQKSKIDSLE------INFVAGLISAGRASEVQKTLDS------LRVKATSSFELAYN 186 (666)
Q Consensus 119 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~l~~~~~~~g~~~~A~~~~~~------~~~~~~~~~~~~~~ 186 (666)
.+-|.-+++.|++...+.+|+.+++...++.. ..|+.+|+..++|++|+++... .+..........-|
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 45677788999999999999999988777765 6677777778888888875432 22222233446678
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhH
Q 005990 187 TACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESS 266 (666)
Q Consensus 187 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~ 266 (666)
+|..+-..|.|++|+.+..+-+.+..+- .|. ..-..+++++|.+|...|+.-.-. .|.+..
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areL--------gDr-v~e~RAlYNlgnvYhakGk~~g~~---------~pee~g- 161 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFAREL--------GDR-VLESRALYNLGNVYHAKGKCTGLE---------APEEKG- 161 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHH--------hHH-HhhhHHHhhhhhhhhhcccccCCC---------Chhhcc-
Confidence 9999999999999999988877776431 111 112368999999999887632100 110000
Q ss_pred HHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhcccc
Q 005990 267 FAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM 346 (666)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 346 (666)
... .+....|+..++-....+.+.+.+...+.
T Consensus 162 -------------~f~-~ev~~al~~Av~fy~eNL~l~~~lgDr~a---------------------------------- 193 (639)
T KOG1130|consen 162 -------------AFN-AEVTSALENAVKFYMENLELSEKLGDRLA---------------------------------- 193 (639)
T ss_pred -------------ccc-HHHHHHHHHHHHHHHHHHHHHHHhhhHHh----------------------------------
Confidence 000 00001110000000000000000010000
Q ss_pred CCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhC---CC--hhHHHHHHHHHHHHHcCChhHHHHHHhcCcC----CCC
Q 005990 347 FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL---PD--KSKIILLARAQVAAAANHPFIAAESLAKIPD----IQH 417 (666)
Q Consensus 347 ~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~---p~--~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~----~~~ 417 (666)
...++-.++..|+-.|+|+.|+..-+.-+... .+ ....++..++.+++-.|+++.|+++|...+. +..
T Consensus 194 ---qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~ 270 (639)
T KOG1130|consen 194 ---QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN 270 (639)
T ss_pred ---hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc
Confidence 01122333444455555555555444333221 11 1133667778888888888888888877643 222
Q ss_pred ---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhc
Q 005990 418 ---MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 490 (666)
Q Consensus 418 ---~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 490 (666)
.....+.|+..|.-..++++|+.++.+-+.+...-.....+...+| .+|..+-..|..+.|..+.+..++..
T Consensus 271 r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Racw-SLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 271 RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACW-SLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3334688899999999999999999988777654433344555566 89999999999999998888877654
No 117
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.20 E-value=1.5e-08 Score=98.41 Aligned_cols=187 Identities=19% Similarity=0.206 Sum_probs=123.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 005990 60 KVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQ 139 (666)
Q Consensus 60 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 139 (666)
.|.+|...++|++|...|.++ +.|+.+.++...|-. .+...+.++ +.+++++|+.+|+
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kA-----------a~~~~~~~~~~~Aa~----------~~~~Aa~~~-k~~~~~~Ai~~~~ 98 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKA-----------ADCYEKLGDKFEAAK----------AYEEAANCY-KKGDPDEAIECYE 98 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHH-----------HHHHHHTT-HHHHHH----------HHHHHHHHH-HHTTHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHH-----------HHHHHHcCCHHHHHH----------HHHHHHHHH-HhhCHHHHHHHHH
Confidence 356677777777777777776 344444555444432 334445554 4448889999998
Q ss_pred HHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhhhhhccCC
Q 005990 140 KLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEM-NKYTEAEQLLLTARRIGQETLTDD 218 (666)
Q Consensus 140 ~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~l~~a~~~~~~~~~~~ 218 (666)
+++. +|...|++..|-. ++..+|.+|... |++++|+++|++|+.+...
T Consensus 99 ~A~~------------~y~~~G~~~~aA~--------------~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~----- 147 (282)
T PF14938_consen 99 KAIE------------IYREAGRFSQAAK--------------CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ----- 147 (282)
T ss_dssp HHHH------------HHHHCT-HHHHHH--------------HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH-----
T ss_pred HHHH------------HHHhcCcHHHHHH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----
Confidence 8754 3677787777644 566678888888 9999999999999999753
Q ss_pred CCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhh
Q 005990 219 NFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDM 298 (666)
Q Consensus 219 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~ 298 (666)
++.......++..+|.++...|+|++|+++|+++......+.
T Consensus 148 ----e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~---------------------------------- 189 (282)
T PF14938_consen 148 ----EGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN---------------------------------- 189 (282)
T ss_dssp ----TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC----------------------------------
T ss_pred ----CCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc----------------------------------
Confidence 222234457888999999999999999999999886543221
Q ss_pred hhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCC
Q 005990 299 QNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD 349 (666)
Q Consensus 299 ~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~ 349 (666)
+........++..+.+++..|++..|...++.....+|.
T Consensus 190 ------------l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 190 ------------LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp ------------TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred ------------ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 111111122344477888889999998888888777664
No 118
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.20 E-value=3.7e-10 Score=97.02 Aligned_cols=115 Identities=17% Similarity=0.119 Sum_probs=100.8
Q ss_pred HHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 136 EFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 136 ~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
+.|++++..+|++.. ..++..+...|++++|+..|+.++..+|.+..+++++|.++...|++++|+.+|++++...+.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 467888888888766 888888899999999999999999999999999999999999999999999999999988843
Q ss_pred hccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHh
Q 005990 214 TLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADES 265 (666)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~ 265 (666)
. ...++.+|.++...|++++|+..|+.+++.+|.+..
T Consensus 84 ~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 84 D---------------PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred C---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 2 258889999999999999999999999999987753
No 119
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=3e-08 Score=101.79 Aligned_cols=315 Identities=13% Similarity=0.102 Sum_probs=167.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHH
Q 005990 120 LKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTE 199 (666)
Q Consensus 120 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 199 (666)
-.|.+...+|..++|..+|++.-+.+ .|-..|...|.+++|.++-+.--..+ --..+|+.|.-+...++.+.
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~D------LlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRYD------LLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH------HHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHH
Confidence 34555566666777777776643221 22234555666766666544322221 12356666666667777777
Q ss_pred HHHHHHHHHHhhhhh---ccCCCCChhhHhh-----hhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHH
Q 005990 200 AEQLLLTARRIGQET---LTDDNFAEDDIEI-----ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAV 271 (666)
Q Consensus 200 A~~~l~~a~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~ 271 (666)
|+++|+++-....+- +.+. |..++. .-...|.--|..+...|+.+.|+.+|..+-... ..
T Consensus 877 AleyyEK~~~hafev~rmL~e~---p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~f---------s~ 944 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEY---PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYF---------SM 944 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhC---hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhh---------hh
Confidence 777776642211000 0000 000000 000355566777788899999999998775321 11
Q ss_pred hhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccC----
Q 005990 272 NNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF---- 347 (666)
Q Consensus 272 ~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---- 347 (666)
..+.++.+..+ .+.+..++. . .....|.++..|...|++.+|+.+|.++....
T Consensus 945 VrI~C~qGk~~--kAa~iA~es--------------g-------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIR 1001 (1416)
T KOG3617|consen 945 VRIKCIQGKTD--KAARIAEES--------------G-------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIR 1001 (1416)
T ss_pred eeeEeeccCch--HHHHHHHhc--------------c-------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333322 222211100 0 11234666788888888888888887664311
Q ss_pred --CCC-c-hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcC----------c
Q 005990 348 --PDS-V-MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKI----------P 413 (666)
Q Consensus 348 --p~~-~-~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~----------~ 413 (666)
.++ . +-+..+ .+.....+.-.|..+|+.. +. ..-..+.+|.+.|.+.+|+++.-.. .
T Consensus 1002 lcKEnd~~d~L~nl-al~s~~~d~v~aArYyEe~----g~----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 1002 LCKENDMKDRLANL-ALMSGGSDLVSAARYYEEL----GG----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAK 1072 (1416)
T ss_pred HHHhcCHHHHHHHH-HhhcCchhHHHHHHHHHHc----ch----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHH
Confidence 111 0 111111 1111222333444444432 11 1122344566666666665543221 1
Q ss_pred CCCC--ChhHHHHHHHHHHHcCChhHHHHHHH------HHHHHHHHh------------------ccCcchHHHHHHHHH
Q 005990 414 DIQH--MPATVATLVALKERAGDIDGAAAVLD------SAIKWWLNA------------------MTEDNKLSVIMQEAA 467 (666)
Q Consensus 414 ~~~~--~~~~~~~l~~~~~~~g~~~~A~~~l~------~a~~~~~~~------------------~~~~~~~~~~~~~l~ 467 (666)
++++ +|.++..-+..+....+|++|..++- .|+.+..+. ..+......++..+|
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqva 1152 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVA 1152 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHH
Confidence 2344 89999999999999999999987665 444444321 111234556888999
Q ss_pred HHHHhCCChhhHHHHHHHH
Q 005990 468 SFKLRHGREEDASHLFEEL 486 (666)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~ 486 (666)
.+++++|.|..|.+-|.++
T Consensus 1153 e~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1153 ELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHhccchHHHHHHHhhh
Confidence 9999999999998888764
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.14 E-value=1.2e-08 Score=99.78 Aligned_cols=179 Identities=20% Similarity=0.145 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhc-cchhhhHHHHHHHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHc
Q 005990 54 EDAMRCKVVALIKADNIDDALSTIQSSQK-FTFDFNYLKAYCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRS 128 (666)
Q Consensus 54 ~~a~~~~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~a~~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~ 128 (666)
....+......+....-..+-..+-+... ......|..+..+|..|++++|+..+.. .|+|+..+...++++...
T Consensus 274 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~ 353 (484)
T COG4783 274 FQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEA 353 (484)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34444444444443333333333333322 4567888899999999999999887775 788999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 005990 129 GEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLT 206 (666)
Q Consensus 129 g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 206 (666)
++..+|++.+++++...|+... ++++.+|...|++.+|+..++..+..+|+++..|..+|..|-.+|+-.+|...
T Consensus 354 nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A--- 430 (484)
T COG4783 354 NKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA--- 430 (484)
T ss_pred CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH---
Confidence 9999999999999999998755 99999999999999999999999999999999999999999998887665433
Q ss_pred HHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 005990 207 ARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADE 264 (666)
Q Consensus 207 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~ 264 (666)
.+..|...|++++|+..+..+.+....+.
T Consensus 431 -----------------------------~AE~~~~~G~~~~A~~~l~~A~~~~~~~~ 459 (484)
T COG4783 431 -----------------------------RAEGYALAGRLEQAIIFLMRASQQVKLGF 459 (484)
T ss_pred -----------------------------HHHHHHhCCCHHHHHHHHHHHHHhccCCc
Confidence 34556677899999999988887664443
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.14 E-value=5.6e-10 Score=93.68 Aligned_cols=101 Identities=12% Similarity=0.019 Sum_probs=95.7
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHH
Q 005990 112 ENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTAC 189 (666)
Q Consensus 112 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 189 (666)
++.....+.+|..++..|++++|..+|+-+...+|.+.. .+||.++...|++.+|+..|..+..++|+++..++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 345677889999999999999999999999999999988 999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhhh
Q 005990 190 SLAEMNKYTEAEQLLLTARRIGQ 212 (666)
Q Consensus 190 ~~~~~g~~~~A~~~l~~a~~~~~ 212 (666)
|++..|+.+.|++.|+.++..+.
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999994
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.13 E-value=1.7e-09 Score=109.91 Aligned_cols=219 Identities=15% Similarity=0.150 Sum_probs=178.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHh---cCCChhHHHHHHHHHHH
Q 005990 51 PSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKI---QENNPATMLLKSQILYR 127 (666)
Q Consensus 51 p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~---~~~~~~~~~~la~~~~~ 127 (666)
|........++..+..+|-...|+..+++. ..+-..++||..+|+...|..++.+ .+.++..|-.+|.+...
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 445667778999999999999999999985 5677899999999999999998877 35588889999999877
Q ss_pred cCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 005990 128 SGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTA 207 (666)
Q Consensus 128 ~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 207 (666)
..-|+.|.++.+..-.. ....++......++|+++...|+..++.+|-....||++|++.++.++++.|.+.|..+
T Consensus 470 ~s~yEkawElsn~~sar----A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR----AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred hHHHHHHHHHhhhhhHH----HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 77777777776654211 11444444556799999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHH
Q 005990 208 RRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSL 287 (666)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~ 287 (666)
+.+.|.. ..+|.+++..|...|+..+|...+.++++-+-.+..
T Consensus 546 vtL~Pd~---------------~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~---------------------- 588 (777)
T KOG1128|consen 546 VTLEPDN---------------AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ---------------------- 588 (777)
T ss_pred hhcCCCc---------------hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe----------------------
Confidence 9999543 369999999999999999999999999976633321
Q ss_pred HHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhcccc
Q 005990 288 KKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM 346 (666)
Q Consensus 288 ~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 346 (666)
++.|...+....|.+++|++.+.++...
T Consensus 589 -------------------------------iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 589 -------------------------------IWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred -------------------------------eeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 1234466777888899988888877654
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.10 E-value=2.4e-09 Score=89.89 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=93.6
Q ss_pred hhC-CChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCC
Q 005990 143 KSK-IDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDN 219 (666)
Q Consensus 143 ~~~-p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~ 219 (666)
... ++..+ +.++..+...|++++|...|+-+...+|.+.+.|+++|.++..+|+|.+|+..|.+++.+.++.+
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp---- 103 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP---- 103 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----
Confidence 345 55555 88888999999999999999999999999999999999999999999999999999999995432
Q ss_pred CChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 005990 220 FAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRN 260 (666)
Q Consensus 220 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~ 260 (666)
.+++++|.++...|+.+.|++.|+.++...
T Consensus 104 -----------~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 104 -----------QAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred -----------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999876
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=4e-09 Score=107.33 Aligned_cols=215 Identities=9% Similarity=0.031 Sum_probs=180.8
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch--hhhHHHHHHHHHh
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF--DFNYLKAYCLYRQ 98 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~a~~~~~~ 98 (666)
.--...+..+...|=...|+.+|++. ..|-..+.||...|+..+|..++.+-.+.++ ..+-.+|.+....
T Consensus 399 q~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccCh
Confidence 33455677778889999999999885 5777889999999999999998888766433 3444555555555
Q ss_pred CCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhc
Q 005990 99 NRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVK 176 (666)
Q Consensus 99 g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 176 (666)
.-|+.|.++.+.. +..+...+|...++.++|+++...++..++++|-... +++|.+..+.+++..|...|...+..
T Consensus 471 s~yEkawElsn~~--sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL 548 (777)
T KOG1128|consen 471 SLYEKAWELSNYI--SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL 548 (777)
T ss_pred HHHHHHHHHhhhh--hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence 5588888887553 3457777888888899999999999999999998777 89999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 005990 177 ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDI 256 (666)
Q Consensus 177 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~ 256 (666)
+|++.++|.|+++.|+..++-.+|...+.+|++-+..+. .+|-+...+....|.+++|+..|.+.
T Consensus 549 ~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w---------------~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 549 EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW---------------QIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC---------------eeeechhhhhhhcccHHHHHHHHHHH
Confidence 999999999999999999999999999999999884422 47888888899999999999999999
Q ss_pred HhhC
Q 005990 257 IKRN 260 (666)
Q Consensus 257 l~~~ 260 (666)
+...
T Consensus 614 l~~~ 617 (777)
T KOG1128|consen 614 LDLR 617 (777)
T ss_pred HHhh
Confidence 8654
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=4.6e-09 Score=102.57 Aligned_cols=149 Identities=23% Similarity=0.141 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHH
Q 005990 317 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 396 (666)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~ 396 (666)
....+..+..++..|++++|+..+..++...|+++..+...+.++...++..+|.+.+++++...|.... +.+.+++.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~-l~~~~a~al 384 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL-LQLNLAQAL 384 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH-HHHHHHHHH
Confidence 3456777888999999999999999999999999999999999999999999999999999999999755 899999999
Q ss_pred HHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCC
Q 005990 397 AAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGR 475 (666)
Q Consensus 397 ~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 475 (666)
+..|++.+|+.++......+| +|..|..|+..|..+|+..+|... .++.|...|+
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A------------------------~AE~~~~~G~ 440 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA------------------------RAEGYALAGR 440 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH------------------------HHHHHHhCCC
Confidence 999999999999999998888 999999999999999988766443 3555567789
Q ss_pred hhhHHHHHHHHHHhc
Q 005990 476 EEDASHLFEELVKTH 490 (666)
Q Consensus 476 ~~~A~~~~~~~l~~~ 490 (666)
+++|+..+..+.+..
T Consensus 441 ~~~A~~~l~~A~~~~ 455 (484)
T COG4783 441 LEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999888766
No 126
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.07 E-value=2.5e-08 Score=97.02 Aligned_cols=102 Identities=16% Similarity=0.111 Sum_probs=69.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC------hHH
Q 005990 422 VATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS------IEA 495 (666)
Q Consensus 422 ~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~ 495 (666)
+..++.++...|++++|+++|+++.....+...........+...+.+++..||...|...|++....+|. ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 34566777777777777777777665432221112223345556778889999999999999999999885 456
Q ss_pred HHHHHHhhccCChhhHHHHHhcCCCCCC
Q 005990 496 LVGLVTTSAHVDVDKAESYEKRLKPLPG 523 (666)
Q Consensus 496 l~~l~~~~~~~d~~~a~~~~~~l~~~~~ 523 (666)
+..|+.++...|.+.....+.....+..
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 7889999999999888777666555433
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.07 E-value=1.1e-09 Score=94.15 Aligned_cols=114 Identities=17% Similarity=0.096 Sum_probs=103.7
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC
Q 005990 338 ELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH 417 (666)
Q Consensus 338 ~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 417 (666)
+.+..++...|++....+.++..+...|++++|+..++.++..+|.+.. ++..++.++...|++++|+.++++++...|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR-YWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3567788889999888999999999999999999999999999998765 899999999999999999999999999998
Q ss_pred -ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 005990 418 -MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNA 452 (666)
Q Consensus 418 -~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~ 452 (666)
++..+..++.+|...|++++|...|+.+++..|+.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 88889999999999999999999999999987543
No 128
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.06 E-value=5.7e-09 Score=90.36 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhhccc------hhhhHH
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSD---EDAMRCKVVALIKADNIDDALSTIQSSQKFT------FDFNYL 90 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~ 90 (666)
....|..+...+..+++..+...++.++..+|+. ..+.+.++.+++..|+|++|+..|+.+.... +...+.
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4567888888889999999999999999999998 6778889999999999999999999995543 246678
Q ss_pred HHHHHHHhCCHHHHHHHHHhcCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005990 91 KAYCLYRQNRLDEALESLKIQEN---NPATMLLKSQILYRSGEMDACVEFYQKLQ 142 (666)
Q Consensus 91 ~a~~~~~~g~~~~A~~~l~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l 142 (666)
++.+++..|++++|+..++..+. .+.++.++|.++...|++++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 89999999999999999987544 56788899999999999999999999864
No 129
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.05 E-value=3.4e-08 Score=92.84 Aligned_cols=178 Identities=10% Similarity=0.076 Sum_probs=123.3
Q ss_pred CcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHhhhccch------hhh
Q 005990 18 PPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDA---MRCKVVALIKADNIDDALSTIQSSQKFTF------DFN 88 (666)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a---~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------~~~ 88 (666)
.+...+|..+..++..|+|++|+..|++++...|....+ .+.+|.++++.++|++|+..+++.....| .+.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 467788899999999999999999999999999987444 47889999999999999999998855433 233
Q ss_pred HHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH------------------
Q 005990 89 YLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE------------------ 150 (666)
Q Consensus 89 ~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------------ 150 (666)
+.+|.+++.++.- .+....... ..........+|+..|+++++..|+..-
T Consensus 110 Y~~g~~~~~~~~~-----~~~~~~~~~-------~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~ 177 (243)
T PRK10866 110 YMRGLTNMALDDS-----ALQGFFGVD-------RSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 177 (243)
T ss_pred HHHHHhhhhcchh-----hhhhccCCC-------ccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 3333333222110 000000000 0000001123566777777777776432
Q ss_pred -HHHHHHHHHcCChhHHHHHHHHhhhcCCC---hHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 005990 151 -INFVAGLISAGRASEVQKTLDSLRVKATS---SFELAYNTACSLAEMNKYTEAEQLLLTA 207 (666)
Q Consensus 151 -~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~l~~a 207 (666)
...+..|.+.|.+..|+.-++.++...|+ ..++++.++..|...|..++|.......
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 56677888899999999999999987765 5778999999999999999998876543
No 130
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.05 E-value=9e-09 Score=89.14 Aligned_cols=123 Identities=22% Similarity=0.224 Sum_probs=105.8
Q ss_pred HHHHHHcCChHHHHHHHHhccccCCCCc---hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChh--HHHHHHHHHHHHH
Q 005990 324 VLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS--KIILLARAQVAAA 398 (666)
Q Consensus 324 a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~--~~~~~~la~~~~~ 398 (666)
+...+..++...+...++.+...+|++. .+.+.+|.+++..|++++|+..|+.++...|+.. ..+.+.++.+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~ 97 (145)
T PF09976_consen 18 ALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ 97 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 4445578999999999999999999983 6678899999999999999999999999876643 3377889999999
Q ss_pred cCChhHHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005990 399 ANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAI 446 (666)
Q Consensus 399 ~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~ 446 (666)
.|++++|+..|+........+.++..+|.+|...|++++|+..|++|+
T Consensus 98 ~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 98 QGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred cCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999998854433377788999999999999999999999874
No 131
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.04 E-value=2.7e-08 Score=93.55 Aligned_cols=178 Identities=11% Similarity=0.105 Sum_probs=112.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhcCCChHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhh
Q 005990 152 NFVAGLISAGRASEVQKTLDSLRVKATSSFE---LAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIE 228 (666)
Q Consensus 152 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 228 (666)
..+..+...|++++|+..|++++...|.+.. +.+.+|.+++..+++++|+..|++.++..|++ +.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~------------~~ 104 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH------------PN 104 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC------------Cc
Confidence 3333444445555555555555554444332 34777888888888888888888888887654 22
Q ss_pred hhhHHHHHHHHHHHcC------------------ChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHh
Q 005990 229 LAPIAVQLAYVQQLLG------------------NTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKL 290 (666)
Q Consensus 229 ~~~~~~~la~~~~~~g------------------~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l 290 (666)
...+++.+|.++...+ ...+|+..|+.++...|+..- ..++...+
T Consensus 105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-----------------a~~A~~rl 167 (243)
T PRK10866 105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-----------------TTDATKRL 167 (243)
T ss_pred hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh-----------------HHHHHHHH
Confidence 3357777777654443 135788899999999997642 12333333
Q ss_pred HHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCc---hHHHHHHHHHHhhCCh
Q 005990 291 DRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKA 367 (666)
Q Consensus 291 ~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~g~~ 367 (666)
..+-. .+. .-.+..+..|+..|.|..|+.-++.++..+|+.. .+++.++.++...|..
T Consensus 168 ~~l~~--------------~la-----~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 168 VFLKD--------------RLA-----KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred HHHHH--------------HHH-----HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence 22210 000 0113447778888888888888888888888765 5677777888888888
Q ss_pred hHHHHHHHHH
Q 005990 368 GKAEELLGQF 377 (666)
Q Consensus 368 ~~A~~~l~~~ 377 (666)
++|......+
T Consensus 229 ~~a~~~~~~l 238 (243)
T PRK10866 229 AQADKVAKII 238 (243)
T ss_pred HHHHHHHHHH
Confidence 8887766543
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.04 E-value=1.7e-08 Score=92.68 Aligned_cols=164 Identities=14% Similarity=0.146 Sum_probs=117.2
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhhccch------hhhH
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSD---EDAMRCKVVALIKADNIDDALSTIQSSQKFTF------DFNY 89 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~ 89 (666)
+...+|..+..++..|+|.+|+..|+.++...|.. ..+.+.+|.+++..|+|++|+..+++....-| .+.+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 56789999999999999999999999999998875 78999999999999999999999999844322 3444
Q ss_pred HHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-------------------
Q 005990 90 LKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE------------------- 150 (666)
Q Consensus 90 ~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------------- 150 (666)
.+|.+++.... ..+ ......+...+|+..|+.++...|++.-
T Consensus 84 ~~g~~~~~~~~-----~~~--------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e 144 (203)
T PF13525_consen 84 MLGLSYYKQIP-----GIL--------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE 144 (203)
T ss_dssp HHHHHHHHHHH-----HHH---------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-----cch--------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH
Confidence 45544443310 000 1122233445778888888887776532
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCCCh---HHHHHHHHHHHHHhcCHHHHH
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKATSS---FELAYNTACSLAEMNKYTEAE 201 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~ 201 (666)
..++..|...|.+..|+.-++.++...|++ .+++..++.+|..+|..+.|.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 566788888999999999999999988875 467888889999999887543
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.02 E-value=2.3e-05 Score=82.50 Aligned_cols=126 Identities=15% Similarity=0.127 Sum_probs=91.4
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccc--hhh-hHHHHHHHHHhC
Q 005990 23 LFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFT--FDF-NYLKAYCLYRQN 99 (666)
Q Consensus 23 l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~-~~~~a~~~~~~g 99 (666)
.+.-+......++|.+|+..+.++++.+|+...+....|.+++++|++++|..+++...... .+. .-.+-.||-.+|
T Consensus 12 r~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 12 RLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence 34445566788999999999999999999999999999999999999999998888763332 222 235567888899
Q ss_pred CHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChh
Q 005990 100 RLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSL 149 (666)
Q Consensus 100 ~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 149 (666)
++++|..+++. .|. ......+-.+|.+.+.|.+-...--++.+..|.+.
T Consensus 92 ~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred hhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 99999998887 454 55556666677777777654444334434455543
No 134
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=5.1e-09 Score=96.04 Aligned_cols=98 Identities=13% Similarity=0.096 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAE 193 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 193 (666)
.-+-..|.-++..++|.+|+..|.++|.++|.+.. +|.+++|.++|.++.|++.++.++..+|....+|..+|.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 34456778889999999999999999999999887 9999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHhhhh
Q 005990 194 MNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 194 ~g~~~~A~~~l~~a~~~~~~ 213 (666)
+|++++|++.|+++++++|.
T Consensus 162 ~gk~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPD 181 (304)
T ss_pred cCcHHHHHHHHHhhhccCCC
Confidence 99999999999999999965
No 135
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=5.4e-09 Score=95.92 Aligned_cols=114 Identities=13% Similarity=0.009 Sum_probs=102.4
Q ss_pred HHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCC
Q 005990 322 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANH 401 (666)
Q Consensus 322 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~ 401 (666)
+.+.-++..++|.+|+..|.+++...|.++..+..+|.+|.+.|.++.|++.++.++..+|.+.. +|..++.+|..+|+
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk-ay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK-AYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH-HHHHHHHHHHccCc
Confidence 33777889999999999999999999999999999999999999999999999999999999766 99999999999999
Q ss_pred hhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChh
Q 005990 402 PFIAAESLAKIPDIQH-MPATVATLVALKERAGDID 436 (666)
Q Consensus 402 ~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 436 (666)
+++|++.|+++++++| ++.+...|.++-...+...
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999 7766677766666655554
No 136
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.97 E-value=7.6e-08 Score=88.41 Aligned_cols=179 Identities=15% Similarity=0.138 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHh
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEM 194 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 194 (666)
+..++..|..++..|+|.+|+..|+.++...|... -..++.+.+|.+++..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-----------------------------~a~~A~l~la~a~y~~ 55 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-----------------------------YAPQAQLMLAYAYYKQ 55 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-----------------------------THHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-----------------------------HHHHHHHHHHHHHHHc
Confidence 44556666666666666666666666655555432 2344555566666666
Q ss_pred cCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHH-----------cCChHHHHHHHHHHHhhCCCC
Q 005990 195 NKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQL-----------LGNTQEAFGAYTDIIKRNLAD 263 (666)
Q Consensus 195 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----------~g~~~eA~~~~~~~l~~~~~~ 263 (666)
|++..|+..|++.+...|.+ +....+++.+|.++.. ++...+|+..|+.++...|++
T Consensus 56 ~~y~~A~~~~~~fi~~yP~~------------~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S 123 (203)
T PF13525_consen 56 GDYEEAIAAYERFIKLYPNS------------PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS 123 (203)
T ss_dssp T-HHHHHHHHHHHHHH-TT-------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred CCHHHHHHHHHHHHHHCCCC------------cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence 66666666666666655443 1122355555555443 334568899999999999977
Q ss_pred HhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhc
Q 005990 264 ESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAAL 343 (666)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 343 (666)
.-. .++...+..+-.. + ..-.+..+..|+..|.+..|+..++.+
T Consensus 124 ~y~-----------------~~A~~~l~~l~~~--------------l-----a~~e~~ia~~Y~~~~~y~aA~~r~~~v 167 (203)
T PF13525_consen 124 EYA-----------------EEAKKRLAELRNR--------------L-----AEHELYIARFYYKRGKYKAAIIRFQYV 167 (203)
T ss_dssp TTH-----------------HHHHHHHHHHHHH--------------H-----HHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred hHH-----------------HHHHHHHHHHHHH--------------H-----HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 522 2333333222100 0 001133466777777777777777777
Q ss_pred cccCCCCc---hHHHHHHHHHHhhCChhHH
Q 005990 344 PDMFPDSV---MPLLLQAAVLVRENKAGKA 370 (666)
Q Consensus 344 ~~~~p~~~---~~~~~~a~~~~~~g~~~~A 370 (666)
++.+|+.. .++..++..+...|..+.|
T Consensus 168 ~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 168 IENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 77777764 4556666666666666533
No 137
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.95 E-value=1.6e-08 Score=101.35 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=94.2
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCH
Q 005990 22 DLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRL 101 (666)
Q Consensus 22 ~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 101 (666)
.++..+..++..|+|++|+.+|+++++.+|++..+++.+|.+|+.+|++++|+..++++..+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l------------------ 65 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL------------------ 65 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------
Confidence 57889999999999999999999999999999999999999999999999999999988444
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH
Q 005990 102 DEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE 150 (666)
Q Consensus 102 ~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 150 (666)
.|.+..+++.+|.+++.+|+|++|+..|++++..+|++..
T Consensus 66 ---------~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 66 ---------DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred ---------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 5567889999999999999999999999999999998876
No 138
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=3e-07 Score=82.82 Aligned_cols=225 Identities=17% Similarity=0.199 Sum_probs=152.2
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhh--------------cc----
Q 005990 22 DLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQ--------------KF---- 83 (666)
Q Consensus 22 ~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~--------------~~---- 83 (666)
.-+--++.++-.|+|..++....+.-... .+.+....+..+|+.+|.|..-+..+.... ..
T Consensus 10 d~LF~iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 10 DELFNIRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchh
Confidence 33445677778999999998888764443 778888889999999999876544444331 00
Q ss_pred ------------------chhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 005990 84 ------------------TFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSK 145 (666)
Q Consensus 84 ------------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 145 (666)
+......-+.++...|++++|+..+.. ..+..+..+-.+|+.++.+++-|...++++...+
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-GENLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 001222334566777788888888777 5566677777778888888888888887776655
Q ss_pred CChhHHHHHHHHHH----cCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCC
Q 005990 146 IDSLEINFVAGLIS----AGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFA 221 (666)
Q Consensus 146 p~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 221 (666)
.+..-..|+.++.. .+.+.+|.-+|+.+-...+.++..+..+|+|++.+|+|++|..+++.++......
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d------- 240 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD------- 240 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC-------
Confidence 44433446655554 3456777778888777667777788888888888888888888888888776432
Q ss_pred hhhHhhhhhhHHHHHHHHHHHcCChHHHHHHH-HHHHhhCCCC
Q 005990 222 EDDIEIELAPIAVQLAYVQQLLGNTQEAFGAY-TDIIKRNLAD 263 (666)
Q Consensus 222 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~-~~~l~~~~~~ 263 (666)
.....++..+-...|...++..-+ .+....+|..
T Consensus 241 --------petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 241 --------PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred --------HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 136667777777777776655444 4444455554
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.92 E-value=0.00011 Score=77.51 Aligned_cols=441 Identities=14% Similarity=0.095 Sum_probs=228.2
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchh--hhHHHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFD--FNYLKA 92 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~a 92 (666)
+.|+...+..-.+..+++.|..++|..+++..-...++|...+..+-.||..+|++++|..+|+++....|. ..+.+-
T Consensus 38 k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lF 117 (932)
T KOG2053|consen 38 KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLF 117 (932)
T ss_pred HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHH
Confidence 568888899999999999999999998887776777888889999999999999999999999999766554 333445
Q ss_pred HHHHHhCCHHH----HHHHHHhcCCChhH-HHHHHHHHHHcCCHH---------HHHHHHHHHHhhC-CChhH---HHHH
Q 005990 93 YCLYRQNRLDE----ALESLKIQENNPAT-MLLKSQILYRSGEMD---------ACVEFYQKLQKSK-IDSLE---INFV 154 (666)
Q Consensus 93 ~~~~~~g~~~~----A~~~l~~~~~~~~~-~~~la~~~~~~g~~~---------~A~~~~~~~l~~~-p~~~~---~~l~ 154 (666)
.+|.+-+.|.+ |+++++..|+++.. |....-+.......+ -|...++++++.. +-... ..+.
T Consensus 118 mayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl 197 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYL 197 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence 56666666543 66777777765433 223332222222222 2334444444443 21111 3344
Q ss_pred HHHHHcCChhHHHHHHHH-hh-hcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhh------------------
Q 005990 155 AGLISAGRASEVQKTLDS-LR-VKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQET------------------ 214 (666)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~-~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~------------------ 214 (666)
.++...|.+++|...+.. .. ...+.+...-......+...++|.+-.++..+++..+++.
T Consensus 198 ~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~ 277 (932)
T KOG2053|consen 198 LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKE 277 (932)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccc
Confidence 455557777777777622 22 2222222222222233333333333333333333322221
Q ss_pred ccCCCCC--------hhhHh-------hhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccC
Q 005990 215 LTDDNFA--------EDDIE-------IELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKG 279 (666)
Q Consensus 215 ~~~~~~~--------~~~~~-------~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 279 (666)
..+.+.+ ++-.. ....-+++.+-.-+...|+.++++..|-+-+...|--. .++...-+
T Consensus 278 ~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~-------~Dl~~yl~ 350 (932)
T KOG2053|consen 278 PAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCA-------IDLNHYLG 350 (932)
T ss_pred cchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhH-------hhHHHhhc
Confidence 0000000 00000 00001222222222356777777777755543333110 01110111
Q ss_pred CCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHH--HHHHHcCChH-----HHH-------HHHHhccc
Q 005990 280 PKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRV--LLLLHANKMD-----QAR-------ELVAALPD 345 (666)
Q Consensus 280 ~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a--~~~~~~~~~~-----~A~-------~~~~~~~~ 345 (666)
.-+.......+..++.... ........+....+ .+....|.|. .-. ..|+.-+.
T Consensus 351 ~l~~~q~~~l~~~l~~~~~------------~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls 418 (932)
T KOG2053|consen 351 HLNIDQLKSLMSKLVLADD------------DSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLS 418 (932)
T ss_pred cCCHHHHHHHHHHhhccCC------------cchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccc
Confidence 1111111111111111100 00000000111111 1111222111 111 11111111
Q ss_pred ----cCCCCc---hHHHHH-----HHHHHhhCC---hhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHh
Q 005990 346 ----MFPDSV---MPLLLQ-----AAVLVRENK---AGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLA 410 (666)
Q Consensus 346 ----~~p~~~---~~~~~~-----a~~~~~~g~---~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~ 410 (666)
..|.+. ..+..+ ..++.+.++ +-+|+-+++..+..+|.+.. +-+.+..+|.-.|-+..|.++|.
T Consensus 419 ~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~-~KLlLiriY~~lGa~p~a~~~y~ 497 (932)
T KOG2053|consen 419 LSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQ-TKLLLIRIYSYLGAFPDAYELYK 497 (932)
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHH-HHHHHHHHHHHhcCChhHHHHHH
Confidence 122221 122222 234455555 44899999999999998765 88888999999999999999998
Q ss_pred cCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHH
Q 005990 411 KIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHL 482 (666)
Q Consensus 411 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 482 (666)
.+--.+- ...+-..+...+...|++..+...++..+..+.++....++ +....++.|.|.+-.+.
T Consensus 498 tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e-------yI~~AYr~g~ySkI~em 563 (932)
T KOG2053|consen 498 TLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDSSLKETPE-------YIALAYRRGAYSKIPEM 563 (932)
T ss_pred hcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHH-------HHHHHHHcCchhhhHHH
Confidence 7632211 22233455566777899999999999999988665543333 23334567777765544
No 140
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.90 E-value=2.7e-08 Score=99.70 Aligned_cols=96 Identities=11% Similarity=0.123 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhc
Q 005990 118 MLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMN 195 (666)
Q Consensus 118 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 195 (666)
+...|..++..|+|++|+.+|++++..+|++.. .+++.++...|++++|+..+++++..+|++..+++++|.+++.+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 556789999999999999999999999999887 899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhh
Q 005990 196 KYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 196 ~~~~A~~~l~~a~~~~~~ 213 (666)
+|++|+..|++++.+.+.
T Consensus 85 ~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 85 EYQTAKAALEKGASLAPG 102 (356)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 999999999999999954
No 141
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=3.2e-06 Score=82.50 Aligned_cols=433 Identities=15% Similarity=0.153 Sum_probs=263.7
Q ss_pred CcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHhhh---------------
Q 005990 18 PPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKV-VALIKADNIDDALSTIQSSQ--------------- 81 (666)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~-~~~~~~g~~~~A~~~~~~~~--------------- 81 (666)
+.-.++...+...+..++|+..++.+..+-.++-.+..+++..+ ..|++.|.+..- .+++...
T Consensus 15 d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~-~ll~el~aL~~~~~~~~~~~~g 93 (696)
T KOG2471|consen 15 DENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHS-VLLKELEALTADADAPGDVSSG 93 (696)
T ss_pred chhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhH-HHHHHHHHHHHhhccccchhcc
Confidence 34567888888999999999999999988888777655555544 457777766432 2222220
Q ss_pred ---ccchhhhHHHHHHHHHhCCHHHHHHHHHhcCC---------ChhHHHHHHHHHHHcCCHHHHHHHHH---HHHhh--
Q 005990 82 ---KFTFDFNYLKAYCLYRQNRLDEALESLKIQEN---------NPATMLLKSQILYRSGEMDACVEFYQ---KLQKS-- 144 (666)
Q Consensus 82 ---~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~---~~l~~-- 144 (666)
....-..+..|.+||....+.+|++.....-. -..+.++.-+++.....-++|+.+.. +++..
T Consensus 94 ld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~ 173 (696)
T KOG2471|consen 94 LSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKR 173 (696)
T ss_pred hhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 01134567888889999999999887655111 12233444455555555666665443 33321
Q ss_pred -CCC--hhH---------------------------HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHh
Q 005990 145 -KID--SLE---------------------------INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEM 194 (666)
Q Consensus 145 -~p~--~~~---------------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 194 (666)
.+. +.. ..-...|+.+.+..-+....+.+.....++...++..+..++..
T Consensus 174 ~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~ 253 (696)
T KOG2471|consen 174 MKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAH 253 (696)
T ss_pred ccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHh
Confidence 111 000 11233344455555555555555555567888999999999999
Q ss_pred cCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhh
Q 005990 195 NKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNL 274 (666)
Q Consensus 195 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l 274 (666)
|+|..|.+.+...--.+... -..+|+-. ....|.++|.|++++|.|.-+..+|.++++.. -..+.++
T Consensus 254 gn~~kA~KlL~~sni~~~~g---~~~T~q~~---~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~------c~qL~~g- 320 (696)
T KOG2471|consen 254 GNHPKAMKLLLVSNIHKEAG---GTITPQLS---SCIFNNNLGCIHYQLGCYQASSVLFLKALRNS------CSQLRNG- 320 (696)
T ss_pred cchHHHHHHHHhcccccccC---ccccchhh---hheeecCcceEeeehhhHHHHHHHHHHHHHHH------HHHHhcc-
Confidence 99999999876542222110 00111110 12467899999999999999999999998611 0011111
Q ss_pred hhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHH
Q 005990 275 VALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPL 354 (666)
Q Consensus 275 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 354 (666)
+.+.. -..+.......+.||.+.+++..|+.-.|.++|..+...+..++.+|
T Consensus 321 --~~~~~--------------------------~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlW 372 (696)
T KOG2471|consen 321 --LKPAK--------------------------TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLW 372 (696)
T ss_pred --CCCCc--------------------------ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHH
Confidence 00000 01222333445789999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCC--h-----------------------------------------------hHHHHHHHHHHhhC----
Q 005990 355 LLQAAVLVRENK--A-----------------------------------------------GKAEELLGQFAEKL---- 381 (666)
Q Consensus 355 ~~~a~~~~~~g~--~-----------------------------------------------~~A~~~l~~~~~~~---- 381 (666)
+.+|.+++...+ . +=|.-++..++-.-
T Consensus 373 LRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q 452 (696)
T KOG2471|consen 373 LRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQ 452 (696)
T ss_pred HHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhh
Confidence 998876653211 0 11222333222110
Q ss_pred -----------------------------------------C-Chh----------HHHHHHHHHHHHHcCChhHHHHHH
Q 005990 382 -----------------------------------------P-DKS----------KIILLARAQVAAAANHPFIAAESL 409 (666)
Q Consensus 382 -----------------------------------------p-~~~----------~~~~~~la~~~~~~g~~~~A~~~l 409 (666)
| ..+ ..++...+.+.+..|+.-.|+..-
T Consensus 453 ~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a 532 (696)
T KOG2471|consen 453 DLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAA 532 (696)
T ss_pred cchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHH
Confidence 1 000 123444556667889999999888
Q ss_pred hcCcCCCCChhHHHHHHHHHH-----HcCChhHHHHHHHHHH----------------HHHHHhc---------------
Q 005990 410 AKIPDIQHMPATVATLVALKE-----RAGDIDGAAAVLDSAI----------------KWWLNAM--------------- 453 (666)
Q Consensus 410 ~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~l~~a~----------------~~~~~~~--------------- 453 (666)
++++....-..++-.||.+|. -+.+..+|...+.--+ .+|....
T Consensus 533 ~kLLq~~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~ 612 (696)
T KOG2471|consen 533 TKLLQLADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFL 612 (696)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccC
Confidence 888876665556666666653 4566666666554310 0111100
Q ss_pred cCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC
Q 005990 454 TEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 454 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
..+.....++..+|..+.-+|++++|..++..+...-+.
T Consensus 613 sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs 651 (696)
T KOG2471|consen 613 SVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHS 651 (696)
T ss_pred CHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhc
Confidence 011223346678899999999999999999888776653
No 142
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.83 E-value=1.7e-06 Score=94.56 Aligned_cols=221 Identities=16% Similarity=0.151 Sum_probs=171.4
Q ss_pred hHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHc
Q 005990 164 SEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLL 243 (666)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 243 (666)
.+..+-|++.+..+|++.-.|......+++.++.+.|.+.+++|+..-.- .++ .|...+|..+-.+...-
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~-------REe---eEKLNiWiA~lNlEn~y 1510 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINF-------REE---EEKLNIWIAYLNLENAY 1510 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCc-------chh---HHHHHHHHHHHhHHHhh
Confidence 34556678888889999999999999999999999999999999875411 011 12234555555555555
Q ss_pred CChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHH
Q 005990 244 GNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANR 323 (666)
Q Consensus 244 g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~ 323 (666)
|.-+.-.+.|+++.+.. +++. ++..+
T Consensus 1511 G~eesl~kVFeRAcqyc------------------------d~~~------------------------------V~~~L 1536 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYC------------------------DAYT------------------------------VHLKL 1536 (1710)
T ss_pred CcHHHHHHHHHHHHHhc------------------------chHH------------------------------HHHHH
Confidence 66666777777776433 1111 12233
Q ss_pred HHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCCh-hHHHHHHHHHHHHHcCCh
Q 005990 324 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-SKIILLARAQVAAAANHP 402 (666)
Q Consensus 324 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~~~la~~~~~~g~~ 402 (666)
+.+|...+++++|.++++.+++.+-+....|...+..+++..+-+.|..++.++++.-|.. ...+...-|++..+.|+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6778888999999999999999988778889999999999999999999999999888872 234667778888999999
Q ss_pred hHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 005990 403 FIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKW 448 (666)
Q Consensus 403 ~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~ 448 (666)
+.+..+|+-.+..+| .-++|..++..-.+.|+.+.+..+|++++.+
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 999999999988888 7888998899999999999999999988775
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.82 E-value=1.6e-08 Score=78.16 Aligned_cols=78 Identities=22% Similarity=0.464 Sum_probs=59.2
Q ss_pred hhccHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc---chhhhHHHHHHHHHhCCHHHHHH
Q 005990 32 ERSEFEQAVKVADQVLSTNPS--DEDAMRCKVVALIKADNIDDALSTIQSSQKF---TFDFNYLKAYCLYRQNRLDEALE 106 (666)
Q Consensus 32 ~~~~~~~A~~~~~~~l~~~p~--~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~a~~~~~~g~~~~A~~ 106 (666)
.+|+|++|+.+++++++.+|. +...++.+|.||++.|+|++|+.++++ ... .....+.+|.|++++|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 466778899999999999999999977 322 23455566777777777777777
Q ss_pred HHHh
Q 005990 107 SLKI 110 (666)
Q Consensus 107 ~l~~ 110 (666)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6653
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.80 E-value=1.2e-07 Score=79.33 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=69.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhcCCCh---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhh
Q 005990 152 NFVAGLISAGRASEVQKTLDSLRVKATSS---FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIE 228 (666)
Q Consensus 152 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 228 (666)
.++..+...|++++|+..|..++..+|++ ..+++.+|.+++..|++++|+.+|+.++...|... .
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------------~ 74 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP------------K 74 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC------------c
Confidence 34444455555555555555555544443 46778888888888888888888888888775421 1
Q ss_pred hhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 005990 229 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADE 264 (666)
Q Consensus 229 ~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~ 264 (666)
...+++.+|.++..+|++++|+.+|++++...|++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 75 APDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred ccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 124778888888888888888888888888888765
No 145
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.79 E-value=9.7e-07 Score=82.78 Aligned_cols=317 Identities=12% Similarity=0.031 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHH
Q 005990 56 AMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACV 135 (666)
Q Consensus 56 a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 135 (666)
-....|.-+++..++++|+..+.+....- +++.. ....+-.++++...+|.|++++
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l-----------------~~~~~-------Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKL-----------------SDLMG-------RFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHH-----------------HHHHH-------HHHHhccchhhhhhhHHHHHHH
Confidence 34556666777777777777766652210 11110 1123333444555555555544
Q ss_pred HHHHHHHhhCC--ChhH------HHHHHHHHHcCChhHHHHHHHHhhhcCC-----ChHHHHHHHHHHHHHhcCHHHHHH
Q 005990 136 EFYQKLQKSKI--DSLE------INFVAGLISAGRASEVQKTLDSLRVKAT-----SSFELAYNTACSLAEMNKYTEAEQ 202 (666)
Q Consensus 136 ~~~~~~l~~~p--~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~ 202 (666)
..--..+.... ++.. .|++..+...-++.+++.+-.-.+.... .-..+...++.++..++.|+++++
T Consensus 64 ~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Le 143 (518)
T KOG1941|consen 64 KFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALE 143 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHH
Confidence 33322222110 1111 5566665555556666655544433221 223466678999999999999999
Q ss_pred HHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCC
Q 005990 203 LLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD 282 (666)
Q Consensus 203 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (666)
.|+.|+....+. +|..-| ..++..||.+|.+..++++|+-+..++.++..+- +-
T Consensus 144 sfe~A~~~A~~~--------~D~~LE-lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~---------------~l-- 197 (518)
T KOG1941|consen 144 SFEKALRYAHNN--------DDAMLE-LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY---------------GL-- 197 (518)
T ss_pred HHHHHHHHhhcc--------CCceee-eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc---------------Cc--
Confidence 999999987542 111011 1588999999999999999998887776442110 00
Q ss_pred hhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccC---CC---CchHHHH
Q 005990 283 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF---PD---SVMPLLL 356 (666)
Q Consensus 283 ~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~---~~~~~~~ 356 (666)
.......+..+.+..+..+...|..-.|.++++++.+.. .+ ....+..
T Consensus 198 --------------------------~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~ 251 (518)
T KOG1941|consen 198 --------------------------KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLC 251 (518)
T ss_pred --------------------------CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 111122233345666888889999999999998886642 22 2355677
Q ss_pred HHHHHHhhCChhHHHHHHHHHHhhCCC--h---hHHHHHHHHHHHHHcCCh-----hHHHHHHhcCcCCCC-------Ch
Q 005990 357 QAAVLVRENKAGKAEELLGQFAEKLPD--K---SKIILLARAQVAAAANHP-----FIAAESLAKIPDIQH-------MP 419 (666)
Q Consensus 357 ~a~~~~~~g~~~~A~~~l~~~~~~~p~--~---~~~~~~~la~~~~~~g~~-----~~A~~~l~~~~~~~~-------~~ 419 (666)
+|.+|...|+.+.|..-|+++...... + ...++...|.++....-. -.|+++-++++++.. .-
T Consensus 252 ~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vl 331 (518)
T KOG1941|consen 252 FADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVL 331 (518)
T ss_pred HHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHH
Confidence 899999999999999999988765322 1 122333344443322222 236666666655443 12
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 005990 420 ATVATLVALKERAGDIDGAAAVLDSAIKW 448 (666)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~l~~a~~~ 448 (666)
.+...++.+|...|.-++-...+..+-+.
T Consensus 332 K~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 332 KLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 23467889998888888877777765443
No 146
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.5e-07 Score=87.29 Aligned_cols=110 Identities=12% Similarity=0.055 Sum_probs=98.1
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHc---CChhHHHHHHHHhhhcCC
Q 005990 104 ALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISA---GRASEVQKTLDSLRVKAT 178 (666)
Q Consensus 104 A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~---g~~~~A~~~~~~~~~~~~ 178 (666)
+...+.++|+|..-|.+||.+|..+|++..|...|.+++++.|++.+ ..++.++... ....++...|++++..+|
T Consensus 145 Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP 224 (287)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence 44566679999999999999999999999999999999999999998 6666666552 345678999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 179 SSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 179 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
.+..+.+.+|..++..|+|.+|...++.++...+.
T Consensus 225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999864
No 147
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.78 E-value=3.3e-07 Score=86.69 Aligned_cols=108 Identities=14% Similarity=0.082 Sum_probs=90.7
Q ss_pred cHHHHHHHHHHH-hhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHH
Q 005990 19 PIEDLFTSLNRH-IERSEFEQAVKVADQVLSTNPSD---EDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYC 94 (666)
Q Consensus 19 ~~~~l~~~~~~~-~~~~~~~~A~~~~~~~l~~~p~~---~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~ 94 (666)
+....|..+..+ +..|+|++|+..|+.++..+|++ +.+++.+|.+|+..|+|++|+..|.++....
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---------- 210 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---------- 210 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------
Confidence 456778888876 66799999999999999999988 5899999999999999999999999873221
Q ss_pred HHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH
Q 005990 95 LYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE 150 (666)
Q Consensus 95 ~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 150 (666)
-..+..+.+++.+|.++...|++++|+.+|+++++..|+...
T Consensus 211 --------------P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 211 --------------PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred --------------CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 112335778888999999999999999999999999888764
No 148
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.78 E-value=7.9e-05 Score=71.07 Aligned_cols=292 Identities=13% Similarity=0.049 Sum_probs=201.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHhcC------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHH---c
Q 005990 90 LKAYCLYRQNRLDEALESLKIQE------NNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLIS---A 160 (666)
Q Consensus 90 ~~a~~~~~~g~~~~A~~~l~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~---~ 160 (666)
..+.+-.-.|+-..|.+.-.+.. ..+-++.+-+|...-.|++++|..-|+-++. +|+.....|-.+|+. .
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~ 167 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhc
Confidence 34455556777777777666522 2566778889999999999999999998874 455444555555554 7
Q ss_pred CChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHH
Q 005990 161 GRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQ 240 (666)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 240 (666)
|..+.|+.+-+.+...-|.-.-++...-...+..|+|+.|+++++.......-. ++..+. ..+.+.-+...
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie-------~~~aeR--~rAvLLtAkA~ 238 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE-------KDVAER--SRAVLLTAKAM 238 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc-------hhhHHH--HHHHHHHHHHH
Confidence 999999999999988888877788777788899999999999998877654211 111101 11112222221
Q ss_pred H-HcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHH
Q 005990 241 Q-LLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAI 319 (666)
Q Consensus 241 ~-~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~ 319 (666)
. ..-+...|...-.+++++.|+-...
T Consensus 239 s~ldadp~~Ar~~A~~a~KL~pdlvPa----------------------------------------------------- 265 (531)
T COG3898 239 SLLDADPASARDDALEANKLAPDLVPA----------------------------------------------------- 265 (531)
T ss_pred HHhcCChHHHHHHHHHHhhcCCccchH-----------------------------------------------------
Confidence 1 1224555555555555555532210
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHH-HHHHHHHHhhCCChhHHHHHHHHHHHHH
Q 005990 320 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKA-EELLGQFAEKLPDKSKIILLARAQVAAA 398 (666)
Q Consensus 320 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A-~~~l~~~~~~~p~~~~~~~~~la~~~~~ 398 (666)
...-+..++..|+..++-.+++.+-+..|.-... +..++.+.|+.... ++-..++....|++.. ..+..+...+.
T Consensus 266 av~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia---~lY~~ar~gdta~dRlkRa~~L~slk~nnae-s~~~va~aAld 341 (531)
T COG3898 266 AVVAARALFRDGNLRKGSKILETAWKAEPHPDIA---LLYVRARSGDTALDRLKRAKKLESLKPNNAE-SSLAVAEAALD 341 (531)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH---HHHHHhcCCCcHHHHHHHHHHHHhcCccchH-HHHHHHHHHHh
Confidence 0111667889999999999999998887753221 11233445554322 2333445566787655 78889999999
Q ss_pred cCChhHHHHHHhcCcCCCCChhHHHHHHHHHHHc-CChhHHHHHHHHHHHH
Q 005990 399 ANHPFIAAESLAKIPDIQHMPATVATLVALKERA-GDIDGAAAVLDSAIKW 448 (666)
Q Consensus 399 ~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~l~~a~~~ 448 (666)
.|++..|..--+.+....|...++..|+.+-... |+-.++..++.+++..
T Consensus 342 a~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 342 AGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9999999999999999999888888999998876 9999999999998874
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.77 E-value=1.2e-07 Score=79.39 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChh---H--HHHHHHHHHcCChhHHHHHHHHhhhcCCCh---HHHHHH
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSL---E--INFVAGLISAGRASEVQKTLDSLRVKATSS---FELAYN 186 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~ 186 (666)
+..++.+|..+...|++++|+..|.+++...|++. . ..++.++...|++++|+..|+.++...|++ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 45778899999999999999999999998888753 2 789999999999999999999999877764 678999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 187 TACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 187 la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
+|.++...|++++|+.+|++++...|.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999865
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.76 E-value=3.8e-08 Score=76.06 Aligned_cols=79 Identities=23% Similarity=0.321 Sum_probs=68.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCh--hH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHH
Q 005990 128 SGEMDACVEFYQKLQKSKIDS--LE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQL 203 (666)
Q Consensus 128 ~g~~~~A~~~~~~~l~~~p~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 203 (666)
.|+|+.|+.+|++++...|.+ .. ..++.+++..|++++|+.++++ ...++.+....+.+|.+++.+|+|++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 689999999999999988843 22 6689999999999999999999 777788889999999999999999999999
Q ss_pred HHHH
Q 005990 204 LLTA 207 (666)
Q Consensus 204 l~~a 207 (666)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.75 E-value=5.4e-08 Score=72.07 Aligned_cols=67 Identities=21% Similarity=0.234 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHh
Q 005990 180 SFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLG-NTQEAFGAYTDIIK 258 (666)
Q Consensus 180 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~eA~~~~~~~l~ 258 (666)
++..|+.+|.+++..|+|++|+..|.+++++++. + ..+++.+|.++..+| ++++|+..|+++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~----------~-----~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN----------N-----AEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT----------H-----HHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------C-----HHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 5779999999999999999999999999999954 2 369999999999999 79999999999999
Q ss_pred hCC
Q 005990 259 RNL 261 (666)
Q Consensus 259 ~~~ 261 (666)
++|
T Consensus 67 l~P 69 (69)
T PF13414_consen 67 LDP 69 (69)
T ss_dssp HST
T ss_pred cCc
Confidence 887
No 152
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.74 E-value=3.8e-06 Score=91.85 Aligned_cols=209 Identities=12% Similarity=0.123 Sum_probs=118.2
Q ss_pred HHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCChhH--HHHHHHHHH----cCChhHHHHHHHHhhhcCC
Q 005990 106 ESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQK-SKIDSLE--INFVAGLIS----AGRASEVQKTLDSLRVKAT 178 (666)
Q Consensus 106 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~--~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 178 (666)
.++...|+....|......+...++.++|.++.+++|. +++...+ .|+..+|.. -|.-+...+.|+++.+.+
T Consensus 1449 rlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc- 1527 (1710)
T KOG1070|consen 1449 RLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC- 1527 (1710)
T ss_pred HHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-
Confidence 34444666666777777777777777777777777765 3333222 444444433 243444555565555432
Q ss_pred ChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005990 179 SSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 179 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~ 258 (666)
+.+.++..|.-+|...+.+++|.++|+.+++...+. ..+|..+|..+..+++-+.|..++.+++.
T Consensus 1528 d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~---------------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1528 DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT---------------RKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch---------------hhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 334456666666666666666666666666655321 13666666666666666666666666665
Q ss_pred hCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHH
Q 005990 259 RNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARE 338 (666)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~ 338 (666)
.-|.... .+.+..+ |.+.+..|+.+.++.
T Consensus 1593 ~lPk~eH------------------v~~Iskf---------------------------------AqLEFk~GDaeRGRt 1621 (1710)
T KOG1070|consen 1593 SLPKQEH------------------VEFISKF---------------------------------AQLEFKYGDAERGRT 1621 (1710)
T ss_pred hcchhhh------------------HHHHHHH---------------------------------HHHHhhcCCchhhHH
Confidence 5553210 0111111 555566666666666
Q ss_pred HHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhC
Q 005990 339 LVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL 381 (666)
Q Consensus 339 ~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~ 381 (666)
+|+..+..+|.-.++|..++..-.+.|+.+.+..+|++++...
T Consensus 1622 lfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1622 LFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 6666666666666666666666666666666666666665543
No 153
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=5.7e-06 Score=74.75 Aligned_cols=85 Identities=18% Similarity=0.137 Sum_probs=43.6
Q ss_pred ChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHH-HHHh
Q 005990 332 KMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAA-ESLA 410 (666)
Q Consensus 332 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~-~~l~ 410 (666)
++.+|.-+|+++...+|-.+.....+|.+++.+|+|++|..+++.++..++.++. .+..+..+....|...++. ..+.
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe-tL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE-TLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH-HHHHHHHHHHHhCCChHHHHHHHH
Confidence 3445555555555555555555555555555666666666666666655555433 4444444444455443333 3344
Q ss_pred cCcCCCC
Q 005990 411 KIPDIQH 417 (666)
Q Consensus 411 ~~~~~~~ 417 (666)
++...+|
T Consensus 267 QLk~~~p 273 (299)
T KOG3081|consen 267 QLKLSHP 273 (299)
T ss_pred HHHhcCC
Confidence 4444444
No 154
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.72 E-value=4.8e-07 Score=80.96 Aligned_cols=84 Identities=13% Similarity=0.010 Sum_probs=72.6
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChh---H--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHH
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSL---E--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTA 188 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 188 (666)
...+++.+|.++...|++++|+.+|++++...|+.. . .+++.++...|++++|+..|++++...|.+...+.++|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 567789999999999999999999999987665432 2 88899999999999999999999999999999999999
Q ss_pred HHHHHhcCH
Q 005990 189 CSLAEMNKY 197 (666)
Q Consensus 189 ~~~~~~g~~ 197 (666)
.++...|+.
T Consensus 114 ~~~~~~g~~ 122 (172)
T PRK02603 114 VIYHKRGEK 122 (172)
T ss_pred HHHHHcCCh
Confidence 999888773
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.71 E-value=1.5e-07 Score=75.05 Aligned_cols=96 Identities=20% Similarity=0.315 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHh
Q 005990 117 TMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEM 194 (666)
Q Consensus 117 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 194 (666)
+++.+|.+++..|++++|+..++++++..|.+.. ..++.++...+++++|+..|+.++...|.+..+++.+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 5778899999999999999999999998887755 88899999999999999999999999998889999999999999
Q ss_pred cCHHHHHHHHHHHHHhhh
Q 005990 195 NKYTEAEQLLLTARRIGQ 212 (666)
Q Consensus 195 g~~~~A~~~l~~a~~~~~ 212 (666)
|+++.|...+.+++..++
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 999999999999987763
No 156
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.4e-07 Score=89.02 Aligned_cols=131 Identities=12% Similarity=0.179 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CChhH-------------HHHHHHHHHcCChhHHHHHHHHhhhcCC
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSK----IDSLE-------------INFVAGLISAGRASEVQKTLDSLRVKAT 178 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~-------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 178 (666)
......|..|++.|+|..|...|++++..- +.+.+ .|++.++..++++.+|+....+++..+|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 445678899999999999999999987631 11111 8999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHH-HHHHHHHH
Q 005990 179 SSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEA-FGAYTDII 257 (666)
Q Consensus 179 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA-~~~~~~~l 257 (666)
.|.-++|..|.++...|+|+.|+..|++++++.|.+ ..+...|..+..+..++.+. .++|..++
T Consensus 289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N---------------ka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN---------------KAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999642 24777888777777666554 88888888
Q ss_pred hhCC
Q 005990 258 KRNL 261 (666)
Q Consensus 258 ~~~~ 261 (666)
....
T Consensus 354 ~k~~ 357 (397)
T KOG0543|consen 354 AKLA 357 (397)
T ss_pred hccc
Confidence 6543
No 157
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=2.3e-06 Score=74.51 Aligned_cols=211 Identities=18% Similarity=0.144 Sum_probs=141.6
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchh---hhHHHHHHHHH
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFD---FNYLKAYCLYR 97 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~a~~~~~ 97 (666)
.-+|.++..+-..|-+.-|.--|.++|.+.|.-+++++.+|.-+...|+|+.|.+.|+...+++|. .+.++|..+|-
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 345677777777788888999999999999999999999999999999999999999999888874 45588889999
Q ss_pred hCCHHHHHHHHHh----cCCChh--HHHHHHHHHHHcCCHHHHHHHHH-HHHhhCCChhHHHHHHHHHHcCChhHHHHHH
Q 005990 98 QNRLDEALESLKI----QENNPA--TMLLKSQILYRSGEMDACVEFYQ-KLQKSKIDSLEINFVAGLISAGRASEVQKTL 170 (666)
Q Consensus 98 ~g~~~~A~~~l~~----~~~~~~--~~~~la~~~~~~g~~~~A~~~~~-~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~ 170 (666)
-|++.-|.+-+.+ .|+++. .|..+- -+.-+..+|...+. ++...+.+..-.++...|. |+..+ ...+
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL--gkiS~-e~l~ 219 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL--GKISE-ETLM 219 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH--hhccH-HHHH
Confidence 9999988876654 566543 232222 23445667765443 3332222222244444333 22211 1223
Q ss_pred HHhhhcCCC-------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHc
Q 005990 171 DSLRVKATS-------SFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLL 243 (666)
Q Consensus 171 ~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 243 (666)
+++.....+ -.+.++.+|..+...|+.++|..+|+-++..+--.. .+..-+.+.|+.+...+
T Consensus 220 ~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynf-----------VE~RyA~~EL~~l~q~~ 288 (297)
T COG4785 220 ERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNF-----------VEHRYALLELSLLGQDQ 288 (297)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHH-----------HHHHHHHHHHHHhcccc
Confidence 333322222 256899999999999999999999999988763221 12223556666666555
Q ss_pred CChHH
Q 005990 244 GNTQE 248 (666)
Q Consensus 244 g~~~e 248 (666)
.+..+
T Consensus 289 ~~l~~ 293 (297)
T COG4785 289 DDLAE 293 (297)
T ss_pred chhhh
Confidence 44433
No 158
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.70 E-value=5.9e-08 Score=71.83 Aligned_cols=67 Identities=13% Similarity=0.284 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhhhccch
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKAD-NIDDALSTIQSSQKFTF 85 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~ 85 (666)
+...++..+..++..|+|++|+..|.++++.+|+++.+++.+|.++..+| ++++|+..++++..++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46788999999999999999999999999999999999999999999999 79999999999866543
No 159
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.68 E-value=0.00026 Score=72.79 Aligned_cols=329 Identities=13% Similarity=0.134 Sum_probs=156.9
Q ss_pred HhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--------------------c---chh
Q 005990 30 HIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQK--------------------F---TFD 86 (666)
Q Consensus 30 ~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~--------------------~---~~~ 86 (666)
.+..|+|+.|..+++. +...|+....|..++...+..|+.--|..+|..+.. . ...
T Consensus 454 aid~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~ 532 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTD 532 (1636)
T ss_pred ccccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCch
Confidence 4678999999887765 677887777888887777776666555555544310 0 112
Q ss_pred hhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHH---------------HHHhhC-CChh-
Q 005990 87 FNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQ---------------KLQKSK-IDSL- 149 (666)
Q Consensus 87 ~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~---------------~~l~~~-p~~~- 149 (666)
++-.++.......+|.+|..+|-....... ..-+|..+.+|++|+.+-+ +++... .+..
T Consensus 533 fykvra~lail~kkfk~ae~ifleqn~te~----aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka 608 (1636)
T KOG3616|consen 533 FYKVRAMLAILEKKFKEAEMIFLEQNATEE----AIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKA 608 (1636)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhcccHHH----HHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhh
Confidence 222334444444556666665543221111 1123344445555554322 111111 0100
Q ss_pred --------H-HHHHHHHHHcCChhHHHHHHHH--hhhcCCC----------hHHHHHHHHHHHHHhcCHHHHHHHHHH--
Q 005990 150 --------E-INFVAGLISAGRASEVQKTLDS--LRVKATS----------SFELAYNTACSLAEMNKYTEAEQLLLT-- 206 (666)
Q Consensus 150 --------~-~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~l~~-- 206 (666)
+ ..-..+|+..|....|...... .+..+.+ ..+++-..|.+|-...++++|+++|++
T Consensus 609 ~elk~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgd 688 (1636)
T KOG3616|consen 609 AELKESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGD 688 (1636)
T ss_pred hhhccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHccc
Confidence 0 2333445555555544432210 0000000 122344556667777788888888764
Q ss_pred ----HHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCC
Q 005990 207 ----ARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD 282 (666)
Q Consensus 207 ----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (666)
++++..-.+ |+++ ...--.-|.-+.+.|+++.|+..|-.+--... +... .-+..+
T Consensus 689 af~kaielarfaf------p~ev----v~lee~wg~hl~~~~q~daainhfiea~~~~k--------aiea---ai~ake 747 (1636)
T KOG3616|consen 689 AFGKAIELARFAF------PEEV----VKLEEAWGDHLEQIGQLDAAINHFIEANCLIK--------AIEA---AIGAKE 747 (1636)
T ss_pred HHHHHHHHHHhhC------cHHH----hhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH--------HHHH---Hhhhhh
Confidence 455543322 2222 22333446667778888888888865421100 0000 000111
Q ss_pred hhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 005990 283 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLV 362 (666)
Q Consensus 283 ~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~ 362 (666)
...++..++.+.. .-+ ....+-..+.-|...|+|+-|.++|.++- .......+|.
T Consensus 748 w~kai~ildniqd--------------qk~---~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~ 802 (1636)
T KOG3616|consen 748 WKKAISILDNIQD--------------QKT---ASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYG 802 (1636)
T ss_pred hhhhHhHHHHhhh--------------hcc---ccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHh
Confidence 1122222211110 000 00011223455666777777777776542 1122234566
Q ss_pred hhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhc
Q 005990 363 RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAK 411 (666)
Q Consensus 363 ~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 411 (666)
+.|+|.+|.++-+++. .|+.....++..++-+...|++.+|.++|-.
T Consensus 803 k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred ccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 6777777777666553 2443344555555555566666666555543
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.67 E-value=4.9e-07 Score=80.92 Aligned_cols=118 Identities=12% Similarity=0.099 Sum_probs=94.3
Q ss_pred CCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCCh--hHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHH
Q 005990 349 DSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK--SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATL 425 (666)
Q Consensus 349 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l 425 (666)
.....++.+|.++...|++++|+.+|++++...|+. ...++..++.++...|++++|+..+++++...| ++..+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 344667888888889999999999999998876653 234788899999999999999999999999888 77777888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCCh
Q 005990 426 VALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI 493 (666)
Q Consensus 426 ~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 493 (666)
+.+|...|+...+...++.++. .+++|.++|++++..+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~---------------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA---------------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH---------------------------HHHHHHHHHHHHHhhCchh
Confidence 9999998888777666554432 3567888999999988884
No 161
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=0.00054 Score=67.44 Aligned_cols=435 Identities=13% Similarity=0.049 Sum_probs=242.5
Q ss_pred HHHHHHHHHHHhhhc--cHHHHHHHHHHHHhcCCCC---HHHHHHHHHH-HHHcCCHHHHHHHHHhhhccchhhhHHHHH
Q 005990 20 IEDLFTSLNRHIERS--EFEQAVKVADQVLSTNPSD---EDAMRCKVVA-LIKADNIDDALSTIQSSQKFTFDFNYLKAY 93 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~--~~~~A~~~~~~~l~~~p~~---~~a~~~~~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~ 93 (666)
..+++..+..+-..| +...++++++.++...|.+ +.....+|.+ +.-..+++.|...++++-..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i---------- 76 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLI---------- 76 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH----------
Confidence 457888888888888 7889999999998888765 3334455554 44567788888888877211
Q ss_pred HHHHhCCHHHHHHHHHhcCC----ChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCChhH------HHHHHHHHHcCC
Q 005990 94 CLYRQNRLDEALESLKIQEN----NPATMLLKSQILYRSG-EMDACVEFYQKLQKSKIDSLE------INFVAGLISAGR 162 (666)
Q Consensus 94 ~~~~~g~~~~A~~~l~~~~~----~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~------~~l~~~~~~~g~ 162 (666)
.+..|. .-.+..+++++|.... .+..|...++++++.....+- ..++.+..-..+
T Consensus 77 --------------~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD 142 (629)
T KOG2300|consen 77 --------------SKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKD 142 (629)
T ss_pred --------------HcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhcc
Confidence 111221 1234456666666555 566666666666664333222 445555555666
Q ss_pred hhHHHHHHHHhhh-cCC---ChHHHHHHH--HHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhh-hHHHH
Q 005990 163 ASEVQKTLDSLRV-KAT---SSFELAYNT--ACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELA-PIAVQ 235 (666)
Q Consensus 163 ~~~A~~~~~~~~~-~~~---~~~~~~~~l--a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 235 (666)
+..|++.+.--.. .++ ....+++.+ +.+++..-+..+-...+..+-.+..+.. ++..+.|.. ..++.
T Consensus 143 ~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~------sdk~~~E~LkvFyl~ 216 (629)
T KOG2300|consen 143 FPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNIS------SDKTQKEMLKVFYLV 216 (629)
T ss_pred chhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccC------CChHHHHHHHHHHHH
Confidence 6666665432111 111 111222222 2233334444444444444444432211 222222222 23333
Q ss_pred HHH-HHHHcCChHHHHHHHHHHHhh----CCC----CH--------hHHHHHHh-hh---hh----cc-CCCC-hhHHHH
Q 005990 236 LAY-VQQLLGNTQEAFGAYTDIIKR----NLA----DE--------SSFAVAVN-NL---VA----LK-GPKD-VNDSLK 288 (666)
Q Consensus 236 la~-~~~~~g~~~eA~~~~~~~l~~----~~~----~~--------~~~~~~~~-~l---~~----~~-~~~~-~~~a~~ 288 (666)
+-. .|...|+...+...++++-.. .+. +. ......-+ .+ +. .. .... +..+.+
T Consensus 217 lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K 296 (629)
T KOG2300|consen 217 LQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQK 296 (629)
T ss_pred HHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHH
Confidence 333 344567777776666654321 111 10 00000000 00 00 00 0111 112233
Q ss_pred HhHHHhhhhhhhhhhhHHhhcCC-----CHHHHHHHHHHHHHHHHHcCChHHHHHHHHhcccc---CCC-------CchH
Q 005990 289 KLDRIKEKDMQNFQLARVLDLRL-----SPKQREAIYANRVLLLLHANKMDQARELVAALPDM---FPD-------SVMP 353 (666)
Q Consensus 289 ~l~~~~~~~~~~~~~~~~l~~~~-----~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~-------~~~~ 353 (666)
.-++++.. .+.+...- ..--...+.-+.+.+.+-.|++.+|++.+..+... +|. ...+
T Consensus 297 ~tDe~i~q-------~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~i 369 (629)
T KOG2300|consen 297 YTDEAIKQ-------TEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQI 369 (629)
T ss_pred HHHHHHHH-------HhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHH
Confidence 33333222 11111110 01112234456677788899999998888777543 554 2345
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHhhCCChh--HHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC--------ChhHHH
Q 005990 354 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKS--KIILLARAQVAAAANHPFIAAESLAKIPDIQH--------MPATVA 423 (666)
Q Consensus 354 ~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~--------~~~~~~ 423 (666)
++++|......+.++.|...|..+.+.....+ ..+...+|..|++.|+-+.-.++++.+-..+. ...+++
T Consensus 370 h~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~ 449 (629)
T KOG2300|consen 370 HMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILY 449 (629)
T ss_pred HHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHH
Confidence 67777777888999999999998887654422 23567789999999998888888887654322 123456
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhc---CC
Q 005990 424 TLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH---GS 492 (666)
Q Consensus 424 ~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---p~ 492 (666)
..|-..+.+|++.+|...+.+.++.. +..+...-....+..++.+.+..|+..++.+...-++.+. ||
T Consensus 450 v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 450 VYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence 66777788999999999999988765 2211111122344567888899999999999988777654 66
No 162
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.67 E-value=6.6e-07 Score=89.08 Aligned_cols=128 Identities=17% Similarity=0.101 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhc
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMN 195 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 195 (666)
.+...+..++...++++.|+.+|+++...+|+.. ..++.++...++..+|+..+.+++...|.+++++...|..++..+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~-~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVA-VLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHH-HHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 3344455666778899999999999988887633 678888888999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005990 196 KYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 196 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~ 259 (666)
+++.|+.+.+++..+.| +++ ..|+.|+.+|...|++++|+..++.+--.
T Consensus 249 ~~~lAL~iAk~av~lsP----------~~f-----~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAVELSP----------SEF-----ETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHHHhCc----------hhH-----HHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999999999994 444 69999999999999999999888876543
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.67 E-value=4.6e-07 Score=80.85 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=86.1
Q ss_pred CChHHHHHHHHhccccCCCC--chHHHHHHHHHHhhCChhHHHHHHHHHHhhCCCh--hHHHHHHHHHHHHHcCChhHHH
Q 005990 331 NKMDQARELVAALPDMFPDS--VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK--SKIILLARAQVAAAANHPFIAA 406 (666)
Q Consensus 331 ~~~~~A~~~~~~~~~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~--~~~~~~~la~~~~~~g~~~~A~ 406 (666)
..+..+...+..+.+..+.+ ...++..|.++...|++++|+..|++++...|++ ...++..++.++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 34555666666665555544 3566888888888999999999999998876652 2247888999999999999999
Q ss_pred HHHhcCcCCCC-ChhHHHHHHHHHH-------HcCChhHHHHHHHHHHHHH
Q 005990 407 ESLAKIPDIQH-MPATVATLVALKE-------RAGDIDGAAAVLDSAIKWW 449 (666)
Q Consensus 407 ~~l~~~~~~~~-~~~~~~~l~~~~~-------~~g~~~~A~~~l~~a~~~~ 449 (666)
..+++++.+.| ....+..++.+|. ..|+++.|...+++++..+
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 143 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYW 143 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHH
Confidence 99999998888 6666777777777 4555555555554444443
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.67 E-value=6.3e-07 Score=79.94 Aligned_cols=106 Identities=12% Similarity=-0.023 Sum_probs=68.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCCC---hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKATS---SFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEI 227 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 227 (666)
.+++.++...|++++|+..|++++...++ ...+++++|.++...|++++|+.+|++++.+.+.. .+...
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~--------~~~~~ 110 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL--------PQALN 110 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--------HHHHH
Confidence 56666666677777777777777665444 33478888888888888888888888888876432 11112
Q ss_pred hhhhHHHHHHHHHHHcCChH-------HHHHHHHHHHhhCCCCH
Q 005990 228 ELAPIAVQLAYVQQLLGNTQ-------EAFGAYTDIIKRNLADE 264 (666)
Q Consensus 228 ~~~~~~~~la~~~~~~g~~~-------eA~~~~~~~l~~~~~~~ 264 (666)
.++.++..+|..+...|+++ +|+.+|++++..+|.+.
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 23334444444444777776 55555666666677543
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.65 E-value=1.3e-07 Score=68.90 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=56.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 152 NFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 152 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
.+|..++..|++++|+..|++++..+|++.++++.+|.++..+|++++|+.+|++++...|.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 56788899999999999999999999999999999999999999999999999999998864
No 166
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.1e-06 Score=81.69 Aligned_cols=122 Identities=20% Similarity=0.132 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcC---HHHHHHHHH
Q 005990 131 MDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNK---YTEAEQLLL 205 (666)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~l~ 205 (666)
.+.-+.-++.-+..+|++.+ .-||.+|+..|+++.|...|.++..+.|++++.+..+|.+++.+.+ -.++..+|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 45566667777888999998 9999999999999999999999999999999999999998776553 468999999
Q ss_pred HHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHH
Q 005990 206 TARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSF 267 (666)
Q Consensus 206 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~ 267 (666)
+++.+++ .++ .+.+.||..++++|+|.+|...++.++...|.+....
T Consensus 218 ~al~~D~----------~~i-----ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 218 QALALDP----------ANI-----RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHhcCC----------ccH-----HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 9999994 343 6899999999999999999999999999988775433
No 167
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=2.2e-05 Score=76.77 Aligned_cols=208 Identities=14% Similarity=0.104 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCC----C-HHHHHHHHHHHHHcCCHHHHHHHHHhhhc------------
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLSTNPS----D-EDAMRCKVVALIKADNIDDALSTIQSSQK------------ 82 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~----~-~~a~~~~~~~~~~~g~~~~A~~~~~~~~~------------ 82 (666)
....+..+.+++....|..|++........--. . ...-+.....++...+.++|+.++.-...
T Consensus 100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn 179 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGN 179 (696)
T ss_pred hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 445677888888888888888887766554211 1 11222333455666677777766554300
Q ss_pred ----------cc--------------hhhhHHHHHHHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHH
Q 005990 83 ----------FT--------------FDFNYLKAYCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDAC 134 (666)
Q Consensus 83 ----------~~--------------~~~~~~~a~~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A 134 (666)
.. ..+.......|..+.++.-+..-.+. ..+...+.++.++.+|..|+|..|
T Consensus 180 ~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA 259 (696)
T KOG2471|consen 180 HIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKA 259 (696)
T ss_pred ccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHH
Confidence 00 11222333444555555554443333 345788899999999999999999
Q ss_pred HHHHHHH-HhhCCC------hhH----HHHHHHHHHcCChhHHHHHHHHhhhc------------------CCChHHHHH
Q 005990 135 VEFYQKL-QKSKID------SLE----INFVAGLISAGRASEVQKTLDSLRVK------------------ATSSFELAY 185 (666)
Q Consensus 135 ~~~~~~~-l~~~p~------~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~ 185 (666)
...+... +...+. -.. .|+|.++++.|.|.-+..+|.+++.. .....+++|
T Consensus 260 ~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilY 339 (696)
T KOG2471|consen 260 MKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILY 339 (696)
T ss_pred HHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHH
Confidence 9887654 222222 112 78999999999999888888888741 124678999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHH
Q 005990 186 NTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQL 242 (666)
Q Consensus 186 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 242 (666)
|.|..|+..|+.-.|.++|.++.......+ .+|+.+|.+...
T Consensus 340 NcG~~~Lh~grPl~AfqCf~~av~vfh~nP---------------rlWLRlAEcCim 381 (696)
T KOG2471|consen 340 NCGLLYLHSGRPLLAFQCFQKAVHVFHRNP---------------RLWLRLAECCIM 381 (696)
T ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHHhcCc---------------HHHHHHHHHHHH
Confidence 999999999999999999999998874432 588999887764
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.64 E-value=9.6e-08 Score=69.66 Aligned_cols=62 Identities=15% Similarity=0.267 Sum_probs=56.7
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch
Q 005990 24 FTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF 85 (666)
Q Consensus 24 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 85 (666)
+..+..++..|+|++|+.+|+++++.+|++.++++.+|.++..+|++++|+..|+++....|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 46788999999999999999999999999999999999999999999999999999865544
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.63 E-value=3.8e-07 Score=72.58 Aligned_cols=96 Identities=20% Similarity=0.203 Sum_probs=86.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELA 230 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 230 (666)
.+++.++...|++++|+..++.++...|.+..+++.+|.++...|++++|+.+|++++...+.. .
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~ 68 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN---------------A 68 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---------------h
Confidence 4678888899999999999999999999998999999999999999999999999999987532 1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 005990 231 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNL 261 (666)
Q Consensus 231 ~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~ 261 (666)
.++..+|.++...|++++|...+..++...|
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 4889999999999999999999999987765
No 170
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.62 E-value=9.6e-07 Score=81.05 Aligned_cols=106 Identities=15% Similarity=0.146 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHH
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSD---EDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYR 97 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~ 97 (666)
..+|..+..++..|+|..|...|...++..|++ +.+++++|.+++.+|+|++|...|..+...
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-------------- 207 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-------------- 207 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh--------------
Confidence 459999999999999999999999999999986 899999999999999999999999987322
Q ss_pred hCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH
Q 005990 98 QNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE 150 (666)
Q Consensus 98 ~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 150 (666)
+-+.|.-+..++-+|.+..++|+.++|..+|+++++..|+...
T Consensus 208 ----------~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 208 ----------YPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred ----------CCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 1223446778888888888888888888888888888887654
No 171
>PRK15331 chaperone protein SicA; Provisional
Probab=98.62 E-value=2.1e-06 Score=72.67 Aligned_cols=104 Identities=15% Similarity=0.084 Sum_probs=86.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELA 230 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 230 (666)
+..+.-++..|++++|...|+-+...++.+++.++.+|.++...++|++|+..|..+..+..+++
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp--------------- 105 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY--------------- 105 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC---------------
Confidence 66677778899999999999999889999999999999999999999999999999998885432
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHH
Q 005990 231 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVA 270 (666)
Q Consensus 231 ~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~ 270 (666)
...+..|.||..+|+.+.|+..|..++. .|.+..+...+
T Consensus 106 ~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A 144 (165)
T PRK15331 106 RPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKA 144 (165)
T ss_pred CccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHH
Confidence 3678899999999999999999999987 45555444333
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.61 E-value=9.1e-07 Score=72.17 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-----HHHHHHHHHcCChhHHHHHHHHhhhcCCC---hHHHHHHH
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-----INFVAGLISAGRASEVQKTLDSLRVKATS---SFELAYNT 187 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l 187 (666)
.+++.+|.++-..|+.++|+.+|++++....+... +.++..+...|++++|+..|++.+...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 56789999999999999999999999987655433 88999999999999999999999988787 77888889
Q ss_pred HHHHHHhcCHHHHHHHHHHHHH
Q 005990 188 ACSLAEMNKYTEAEQLLLTARR 209 (666)
Q Consensus 188 a~~~~~~g~~~~A~~~l~~a~~ 209 (666)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999877765
No 173
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.61 E-value=7.7e-07 Score=88.61 Aligned_cols=118 Identities=19% Similarity=0.148 Sum_probs=104.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHhc-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHH
Q 005990 90 LKAYCLYRQNRLDEALESLKIQ-ENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEV 166 (666)
Q Consensus 90 ~~a~~~~~~g~~~~A~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A 166 (666)
.+..++...++++.|++++++. ..++.+...+|.++...++..+|+.++.+++...|.+.+ ...+..+...++++.|
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 4445556678999999999983 346778889999999999999999999999999998887 6677888999999999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 005990 167 QKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTA 207 (666)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 207 (666)
+.+.+++....|++++.|+.|+.+|+..|+|+.|+..+..+
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999877644
No 174
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.59 E-value=7e-07 Score=84.51 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=86.3
Q ss_pred HHHHHHH-HHcCChhHHHHHHHHhhhcCCCh---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHh
Q 005990 151 INFVAGL-ISAGRASEVQKTLDSLRVKATSS---FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIE 226 (666)
Q Consensus 151 ~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 226 (666)
+..+..+ ...|++++|+..|+.++...|++ +.++|.+|.+|+..|++++|+..|++++...|.+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~----------- 214 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP----------- 214 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-----------
Confidence 4444444 45688999999999999888876 57999999999999999999999999999887542
Q ss_pred hhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 005990 227 IELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADE 264 (666)
Q Consensus 227 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~ 264 (666)
....+++.+|.++..+|++++|+.+|+.+++..|+..
T Consensus 215 -~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 215 -KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred -chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 2336889999999999999999999999999999775
No 175
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.59 E-value=2.6e-07 Score=70.25 Aligned_cols=74 Identities=24% Similarity=0.208 Sum_probs=61.9
Q ss_pred CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005990 178 TSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDII 257 (666)
Q Consensus 178 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l 257 (666)
|+...++.++|.+|...|+|++|+.+|++++.+. ...+ + ..++++.++.++|.++..+|++++|+++|++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~------~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIE-EQLG------D-DHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTT------T-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHC------C-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456789999999999999999999999999994 3221 1 225678899999999999999999999999998
Q ss_pred hh
Q 005990 258 KR 259 (666)
Q Consensus 258 ~~ 259 (666)
++
T Consensus 74 ~i 75 (78)
T PF13424_consen 74 DI 75 (78)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 176
>PRK15331 chaperone protein SicA; Provisional
Probab=98.58 E-value=8.4e-07 Score=75.06 Aligned_cols=96 Identities=7% Similarity=0.104 Sum_probs=71.7
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc---chhhhHHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKF---TFDFNYLK 91 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~ 91 (666)
.++...+.+|..+..++..|++++|..+|.-+.-.+|.+.+.|..+|.|+..+++|++|+..|..+..+ +|...|..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 445667888888888888888888888888888888888888888888888888888888888877322 34555566
Q ss_pred HHHHHHhCCHHHHHHHHHh
Q 005990 92 AYCLYRQNRLDEALESLKI 110 (666)
Q Consensus 92 a~~~~~~g~~~~A~~~l~~ 110 (666)
|.|+..+|+.+.|...|+.
T Consensus 112 gqC~l~l~~~~~A~~~f~~ 130 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFEL 130 (165)
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 6666666666666665554
No 177
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.56 E-value=6.9e-06 Score=77.21 Aligned_cols=229 Identities=12% Similarity=0.068 Sum_probs=169.0
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhh----hccc-----hhhh
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSD---EDAMRCKVVALIKADNIDDALSTIQSS----QKFT-----FDFN 88 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~a~~~~~~~~~~~g~~~~A~~~~~~~----~~~~-----~~~~ 88 (666)
...+..+..++.+.++++|+....+.|..-.+. ...+-++..+...+|.|++++..--.. .... -..+
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888999999999999999999875433 334445667888999999887653322 2221 1344
Q ss_pred HHHHHHHHHhCCHHHHHHHHHh---cCC------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--ChhH------H
Q 005990 89 YLKAYCLYRQNRLDEALESLKI---QEN------NPATMLLKSQILYRSGEMDACVEFYQKLQKSKI--DSLE------I 151 (666)
Q Consensus 89 ~~~a~~~~~~g~~~~A~~~l~~---~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~------~ 151 (666)
..++..+-++.++.+++.+... .|. -......++..+..++.|+.+++.|+.+++... ++.. +
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 5667777777777777776654 222 234667789999999999999999999987532 2222 8
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhcC----CCh------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCC
Q 005990 152 NFVAGLISAGRASEVQKTLDSLRVKA----TSS------FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFA 221 (666)
Q Consensus 152 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~------~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 221 (666)
.|+..+....++++|+-...++..+. -++ .-++|.++..+...|....|.++.+.+.++.-..
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~------- 239 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH------- 239 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh-------
Confidence 89999999999999988877775532 122 2357888999999999999999999998887432
Q ss_pred hhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005990 222 EDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 222 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~ 258 (666)
.| .+-.+.....+|+||...|+.+.|..-|+++..
T Consensus 240 -Gd-ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 240 -GD-RALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred -CC-hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 11 133446778899999999999999999998874
No 178
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.56 E-value=0.00049 Score=70.92 Aligned_cols=362 Identities=18% Similarity=0.132 Sum_probs=184.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCC-HHHHHHHHHh-cCCC-hhHHHHHHHHHHHcC
Q 005990 53 DEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNR-LDEALESLKI-QENN-PATMLLKSQILYRSG 129 (666)
Q Consensus 53 ~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~l~~-~~~~-~~~~~~la~~~~~~g 129 (666)
|.+.+..++.++++..-|++|-.+|+++. -+.++.-+++.|+ |-.|+++..- .|.. ..+-...|.-+...|
T Consensus 647 de~il~~ia~alik~elydkagdlfeki~------d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~ 720 (1636)
T KOG3616|consen 647 DEEILEHIAAALIKGELYDKAGDLFEKIH------DFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG 720 (1636)
T ss_pred cHHHHHHHHHHHHhhHHHHhhhhHHHHhh------CHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH
Confidence 34555556666666666666666666652 1233333334333 4444444332 2322 122234456667778
Q ss_pred CHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 005990 130 EMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARR 209 (666)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 209 (666)
+++.|+..|-.+-.. ..-..+-+...++.+|+.+++.+......+ ..+-.++.-|...|+|+.|.++|.++-.
T Consensus 721 q~daainhfiea~~~------~kaieaai~akew~kai~ildniqdqk~~s-~yy~~iadhyan~~dfe~ae~lf~e~~~ 793 (1636)
T KOG3616|consen 721 QLDAAINHFIEANCL------IKAIEAAIGAKEWKKAISILDNIQDQKTAS-GYYGEIADHYANKGDFEIAEELFTEADL 793 (1636)
T ss_pred hHHHHHHHHHHhhhH------HHHHHHHhhhhhhhhhHhHHHHhhhhcccc-ccchHHHHHhccchhHHHHHHHHHhcch
Confidence 888888887654110 122223344567888888887665433222 2444567788888999999888876532
Q ss_pred hhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHH
Q 005990 210 IGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKK 289 (666)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~ 289 (666)
. ..-..+|-+.|+++.|.++-.++. .|.+.....++...- +.....+.++.+.
T Consensus 794 ~-----------------------~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaed--ldehgkf~eaeql 846 (1636)
T KOG3616|consen 794 F-----------------------KDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAED--LDEHGKFAEAEQL 846 (1636)
T ss_pred h-----------------------HHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHh--HHhhcchhhhhhe
Confidence 2 223456778888888887777664 343332222221110 0011111111111
Q ss_pred hHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCc-hHHHHHHHHHHhhCChh
Q 005990 290 LDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV-MPLLLQAAVLVRENKAG 368 (666)
Q Consensus 290 l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~g~~~ 368 (666)
+ -....+. ....+|-..|.++..+.+..+. +|+.. ......+.-+...|+..
T Consensus 847 y------------------iti~~p~------~aiqmydk~~~~ddmirlv~k~---h~d~l~dt~~~f~~e~e~~g~lk 899 (1636)
T KOG3616|consen 847 Y------------------ITIGEPD------KAIQMYDKHGLDDDMIRLVEKH---HGDHLHDTHKHFAKELEAEGDLK 899 (1636)
T ss_pred e------------------EEccCch------HHHHHHHhhCcchHHHHHHHHh---ChhhhhHHHHHHHHHHHhccChh
Confidence 1 0000000 0133445555555555544432 33332 44555666677778888
Q ss_pred HHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCCCh---hHH------HHHHHHHHHcCChhHHH
Q 005990 369 KAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMP---ATV------ATLVALKERAGDIDGAA 439 (666)
Q Consensus 369 ~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~---~~~------~~l~~~~~~~g~~~~A~ 439 (666)
.|...|-++-. +-..+.+|...+-+++|..+...---.+-.. .+| ...+.++.+.|-.+.|+
T Consensus 900 aae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~i 970 (1636)
T KOG3616|consen 900 AAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAI 970 (1636)
T ss_pred HHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHh
Confidence 87777655422 2223345555566666655544321111100 111 11223344444444444
Q ss_pred HH------HHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC
Q 005990 440 AV------LDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 440 ~~------l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
.. |+-++.+.+-.. ......+...++.++...|++++|-+.|-++++++.-
T Consensus 971 d~a~d~~afd~afdlari~~--k~k~~~vhlk~a~~ledegk~edaskhyveaiklnty 1027 (1636)
T KOG3616|consen 971 DFAADNCAFDFAFDLARIAA--KDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTY 1027 (1636)
T ss_pred hhhhcccchhhHHHHHHHhh--hccCccchhHHhhhhhhccchhhhhHhhHHHhhcccc
Confidence 32 222333222111 1112235667888899999999999999999988743
No 179
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=2.9e-06 Score=73.97 Aligned_cols=178 Identities=16% Similarity=0.064 Sum_probs=130.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHH
Q 005990 309 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII 388 (666)
Q Consensus 309 ~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~ 388 (666)
..++...+..+.+.++.+|-..|-+.-|+--|.+++...|+-+.++..+|..+...|+++.|.+.|...++.+|.+.. +
T Consensus 57 ~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y-a 135 (297)
T COG4785 57 RALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY-A 135 (297)
T ss_pred ccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH-H
Confidence 466777777888888888888999999999999999999999999999999999999999999999999999999766 7
Q ss_pred HHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHH--HcCChhHHHHH------------------------
Q 005990 389 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKE--RAGDIDGAAAV------------------------ 441 (666)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~--~~g~~~~A~~~------------------------ 441 (666)
++..+..+.-.|++.-|.+-+.+....+| +|.- ..|+|. ..-+..+|...
T Consensus 136 ~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR---~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgk 212 (297)
T COG4785 136 HLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFR---SLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGK 212 (297)
T ss_pred HhccceeeeecCchHhhHHHHHHHHhcCCCChHH---HHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhh
Confidence 77777777778999999988888877777 5431 112222 12223333322
Q ss_pred ------HHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhc
Q 005990 442 ------LDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 490 (666)
Q Consensus 442 ------l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 490 (666)
++++.....++..-...+...+..+|..++..|+.++|..+|+-++..+
T Consensus 213 iS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 213 ISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2222222211111123344567788999999999999999999888644
No 180
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=0.0018 Score=69.39 Aligned_cols=216 Identities=13% Similarity=0.103 Sum_probs=116.7
Q ss_pred HHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHH
Q 005990 27 LNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALE 106 (666)
Q Consensus 27 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 106 (666)
+...+..+-|++|..+|.+. --+..+...+. -.-+..+.|.++-++. ..|.+|-.+|.+..+.|...+|++
T Consensus 1055 a~iai~~~LyEEAF~ifkkf----~~n~~A~~VLi---e~i~~ldRA~efAe~~--n~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF----DMNVSAIQVLI---ENIGSLDRAYEFAERC--NEPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh----cccHHHHHHHH---HHhhhHHHHHHHHHhh--CChHHHHHHHHHHHhcCchHHHHH
Confidence 45566777788888877653 11222222222 2334555555555554 234555566666666666666666
Q ss_pred HHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-hhHHHHHHHHHHc-------------------------
Q 005990 107 SLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKID-SLEINFVAGLISA------------------------- 160 (666)
Q Consensus 107 ~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~l~~~~~~~------------------------- 160 (666)
.+-+. +++..+....++..+.|.|++-+.++..+-+...+ ..+..|..+|.+.
T Consensus 1126 Syika-dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1126 SYIKA-DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRC 1204 (1666)
T ss_pred HHHhc-CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHH
Confidence 55443 24455555556666666666666555544332111 1123333344444
Q ss_pred ---CChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh------hhhccCCCCChhhHh-hh--
Q 005990 161 ---GRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIG------QETLTDDNFAEDDIE-IE-- 228 (666)
Q Consensus 161 ---g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~------~~~~~~~~~~~~~~~-~~-- 228 (666)
|.|+.|.-+|.. ..-|-.+|..+..+|+|..|...-++|-... ..... .+++. ..
T Consensus 1205 f~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd-----~~EFrlAQiC 1271 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVD-----KEEFRLAQIC 1271 (1666)
T ss_pred hhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc-----hhhhhHHHhc
Confidence 444444333322 1234567888888899999888877765431 11110 01100 00
Q ss_pred ------hhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHh
Q 005990 229 ------LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADES 265 (666)
Q Consensus 229 ------~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~ 265 (666)
.+.-.-.+...|+..|-|+|-+.+++.++.+...+..
T Consensus 1272 GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMg 1314 (1666)
T KOG0985|consen 1272 GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMG 1314 (1666)
T ss_pred CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHH
Confidence 0012235667889999999999999999876654443
No 181
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.54 E-value=0.00044 Score=66.16 Aligned_cols=293 Identities=14% Similarity=0.130 Sum_probs=195.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHH--HHHHHHcCChhHHHHHHHHhhhcCCChH-HHHHHHHHHHHHhc
Q 005990 121 KSQILYRSGEMDACVEFYQKLQKSKIDSLE--INF--VAGLISAGRASEVQKTLDSLRVKATSSF-ELAYNTACSLAEMN 195 (666)
Q Consensus 121 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~g 195 (666)
-|.+....|+-..|...-.+.-+.-..+.+ +.+ +..-.-.|+++.|..-|+.++.. |+.- --+..+-.-....|
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~G 168 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcc
Confidence 355566678888888887776543333333 444 33344589999999999998754 3322 12222222334689
Q ss_pred CHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhh
Q 005990 196 KYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLV 275 (666)
Q Consensus 196 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~ 275 (666)
..+.|..+-+.+-...+. +..++...-...+..|+++.|+++.+.......-...
T Consensus 169 areaAr~yAe~Aa~~Ap~---------------l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~---------- 223 (531)
T COG3898 169 AREAARHYAERAAEKAPQ---------------LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD---------- 223 (531)
T ss_pred cHHHHHHHHHHHHhhccC---------------CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh----------
Confidence 999999999999888854 3356666666778899999999999876543221110
Q ss_pred hccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHH
Q 005990 276 ALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLL 355 (666)
Q Consensus 276 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 355 (666)
.+ . ..+..++...+...+ .-+...|.....++.+..|+-....+
T Consensus 224 ---------~a-e-------------------------R~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav 267 (531)
T COG3898 224 ---------VA-E-------------------------RSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAV 267 (531)
T ss_pred ---------hH-H-------------------------HHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHH
Confidence 00 0 000111111122222 23466788888888999999888888
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhc---CcCCCC-ChhHHHHHHHHHHH
Q 005990 356 LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAK---IPDIQH-MPATVATLVALKER 431 (666)
Q Consensus 356 ~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~---~~~~~~-~~~~~~~l~~~~~~ 431 (666)
.-+..+++.|+..++-.+++.+-+..|...+ .+..++.+.|+. ++.-+++ +.++.| +.+....++..-..
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~ePHP~i----a~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAld 341 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAEPHPDI----ALLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALD 341 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcCCChHH----HHHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHh
Confidence 9999999999999999999999999887433 122234455554 4444443 345566 56667788888889
Q ss_pred cCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHh-CCChhhHHHHHHHHHHh
Q 005990 432 AGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR-HGREEDASHLFEELVKT 489 (666)
Q Consensus 432 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~l~~ 489 (666)
.|++..|..--+.+....|.. +++..++++-.. .||..++..++-++++.
T Consensus 342 a~e~~~ARa~Aeaa~r~~pre--------s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 342 AGEFSAARAKAEAAAREAPRE--------SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccchHHHHHHHHHHhhhCchh--------hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 999999988888776654321 255567887754 59999999999999975
No 182
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.53 E-value=1.9e-05 Score=71.86 Aligned_cols=166 Identities=16% Similarity=0.127 Sum_probs=113.4
Q ss_pred CcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhhccch------hhh
Q 005990 18 PPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSD---EDAMRCKVVALIKADNIDDALSTIQSSQKFTF------DFN 88 (666)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------~~~ 88 (666)
..+..|+..+...++.|+|++|+..|+.+...+|.. ..+...++.++++.++|++|+..+++...+.| -+.
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 356788999999999999999999999988888765 56778888888888999998888888754432 123
Q ss_pred HHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH------------------
Q 005990 89 YLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE------------------ 150 (666)
Q Consensus 89 ~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------------ 150 (666)
+.++.+++..=+ ....+ ..-..+|+..|+.++...|++.-
T Consensus 112 YlkgLs~~~~i~---------~~~rD-------------q~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 112 YLKGLSYFFQID---------DVTRD-------------QSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred HHHHHHHhccCC---------ccccC-------------HHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence 333333222100 00000 01123455556666665555321
Q ss_pred -HHHHHHHHHcCChhHHHHHHHHhhhcCCC---hHHHHHHHHHHHHHhcCHHHHHHHHH
Q 005990 151 -INFVAGLISAGRASEVQKTLDSLRVKATS---SFELAYNTACSLAEMNKYTEAEQLLL 205 (666)
Q Consensus 151 -~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~l~ 205 (666)
..++..|.+.|.+..|+.-++.+++..|+ ..+++..+..+|..+|-.++|...-.
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 56677788889999999888888887654 45678888888999998888876643
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.52 E-value=5.6e-07 Score=66.33 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=51.0
Q ss_pred HhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch
Q 005990 30 HIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF 85 (666)
Q Consensus 30 ~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 85 (666)
++..|+|++|+..|++++..+|++.++++.++.||++.|++++|...++++....+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 36789999999999999999999999999999999999999999999999966544
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.50 E-value=3.5e-06 Score=88.11 Aligned_cols=138 Identities=17% Similarity=0.137 Sum_probs=106.6
Q ss_pred CCChhH--HHHHHHHHHHcCC---HHHHHHHHHHHHhhCCChhH--HHHHHHHHHcC--------ChhHHHHHHHHhhh-
Q 005990 112 ENNPAT--MLLKSQILYRSGE---MDACVEFYQKLQKSKIDSLE--INFVAGLISAG--------RASEVQKTLDSLRV- 175 (666)
Q Consensus 112 ~~~~~~--~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g--------~~~~A~~~~~~~~~- 175 (666)
|.+..+ +++.|.-++..+. +..|+.+|+++++.+|++.. ..++.++.... +...+.....+++.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 445444 4667777766555 78999999999999999876 33344443321 23344555555444
Q ss_pred -cCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHH
Q 005990 176 -KATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYT 254 (666)
Q Consensus 176 -~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~ 254 (666)
.++.++.++..+|..+...|++++|...|++|+.+++. ..++..+|.++...|++++|++.|+
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps----------------~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS----------------WLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 36667788889999999999999999999999999953 2589999999999999999999999
Q ss_pred HHHhhCCCCHh
Q 005990 255 DIIKRNLADES 265 (666)
Q Consensus 255 ~~l~~~~~~~~ 265 (666)
+++.++|.++.
T Consensus 478 ~A~~L~P~~pt 488 (517)
T PRK10153 478 TAFNLRPGENT 488 (517)
T ss_pred HHHhcCCCCch
Confidence 99999998863
No 185
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00046 Score=67.87 Aligned_cols=392 Identities=13% Similarity=0.070 Sum_probs=206.2
Q ss_pred hHHHHHHHHHhC--CHHHHHHHHHhc----CC---ChhHHHHHHHHHHH-cCCHHHHHHHHHHHHhh---CCChhH----
Q 005990 88 NYLKAYCLYRQN--RLDEALESLKIQ----EN---NPATMLLKSQILYR-SGEMDACVEFYQKLQKS---KIDSLE---- 150 (666)
Q Consensus 88 ~~~~a~~~~~~g--~~~~A~~~l~~~----~~---~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~---~p~~~~---- 150 (666)
.+.+|..+...| ++..++++++.. +. .......+|.++++ ..+++.|...++++... -|...+
T Consensus 10 LlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~ 89 (629)
T KOG2300|consen 10 LLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQ 89 (629)
T ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhH
Confidence 345566666677 777888887762 22 34556667766544 56788888888887542 343333
Q ss_pred --HHHHHHHHHcC-ChhHHHHHHHHhhhcCCCh----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChh
Q 005990 151 --INFVAGLISAG-RASEVQKTLDSLRVKATSS----FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAED 223 (666)
Q Consensus 151 --~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 223 (666)
..++.+|.... .+..+...+.++++..... -..++.++.++.-..++..|.+.+. .+..+ .+
T Consensus 90 a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa----vga~s-------Ad 158 (629)
T KOG2300|consen 90 AASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA----VGAES-------AD 158 (629)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh----ccccc-------cc
Confidence 45566666655 6777888888887765443 3456778888888888888888733 22211 11
Q ss_pred hHhhhhhhHHHHH--HHHHHHcCC---hHHHHHHHHHHHhhCCCCHhHHHHHH--------hhhhhccCCCChhHHHHHh
Q 005990 224 DIEIELAPIAVQL--AYVQQLLGN---TQEAFGAYTDIIKRNLADESSFAVAV--------NNLVALKGPKDVNDSLKKL 290 (666)
Q Consensus 224 ~~~~~~~~~~~~l--a~~~~~~g~---~~eA~~~~~~~l~~~~~~~~~~~~~~--------~~l~~~~~~~~~~~a~~~l 290 (666)
.+-.....+.+.+ +.++...-+ ...+.....++.+....|..-...+. ..+...+....+..+++.+
T Consensus 159 ~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQL 238 (629)
T KOG2300|consen 159 HICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQL 238 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHH
Confidence 1111222222222 223333333 33444444455544444432221111 1111122233334445544
Q ss_pred HHHhhhhhhh--hhhhH-------HhhcCCCHHHHHH-HHHHHHHHHHHcCChHHHHHHHHhcccc------CC-CCchH
Q 005990 291 DRIKEKDMQN--FQLAR-------VLDLRLSPKQREA-IYANRVLLLLHANKMDQARELVAALPDM------FP-DSVMP 353 (666)
Q Consensus 291 ~~~~~~~~~~--~~~~~-------~l~~~~~~~q~~~-~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p-~~~~~ 353 (666)
+.-+...... ..... .+...+...|.-. ++.+...--.-.|-+++|.++-++++.. .+ .....
T Consensus 239 Q~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~sril 318 (629)
T KOG2300|consen 239 QDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRIL 318 (629)
T ss_pred HHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 4333221100 00000 0000111111111 1222222223445566666665555432 11 12211
Q ss_pred HH-------HHHHHHHhhCChhHHHHHHHHHHh---hCCC------hhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC
Q 005990 354 LL-------LQAAVLVRENKAGKAEELLGQFAE---KLPD------KSKIILLARAQVAAAANHPFIAAESLAKIPDIQH 417 (666)
Q Consensus 354 ~~-------~~a~~~~~~g~~~~A~~~l~~~~~---~~p~------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 417 (666)
.. ..+.+-.-.|++.+|++.+..+.+ ..|. +...+...++.-...-+-++.|...|..+.....
T Consensus 319 sm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~ 398 (629)
T KOG2300|consen 319 SMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE 398 (629)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh
Confidence 11 112233447999999887776654 4454 1223555566555667889999999988876555
Q ss_pred Ch----hHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhc
Q 005990 418 MP----ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 490 (666)
Q Consensus 418 ~~----~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 490 (666)
.. .....++..|.+.|+-+.-.+.++..-...............++...|.+.+..+++.||...+.+.++..
T Consensus 399 ~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 399 SIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 22 23477899999988876655555433111100000011123456667888899999999999999999876
No 186
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.47 E-value=3.2e-07 Score=85.22 Aligned_cols=101 Identities=12% Similarity=0.032 Sum_probs=83.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhh
Q 005990 152 NFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAP 231 (666)
Q Consensus 152 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 231 (666)
..|.-|+.+|.|++|+.+|.+.+..+|.++..+.|.|.+|+....|..|+.-...|+.++.. ...
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~---------------Y~K 166 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL---------------YVK 166 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH---------------HHH
Confidence 34566778888888888888888888888888889999999999999999999999888843 346
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHH
Q 005990 232 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSF 267 (666)
Q Consensus 232 ~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~ 267 (666)
+|...+.....+|...||.+-++.++.+.|.+..+.
T Consensus 167 AYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 167 AYSRRMQARESLGNNMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHH
Confidence 888888888999999999999999999999765433
No 187
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.46 E-value=0.0023 Score=64.16 Aligned_cols=417 Identities=12% Similarity=0.093 Sum_probs=220.5
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--chh
Q 005990 9 PSPSPSQPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKF--TFD 86 (666)
Q Consensus 9 ~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~ 86 (666)
+......+|.++.+++..+..+..+ -++++...+++.+...|..+.+|...+...+...+|+.-..+|.++... +.+
T Consensus 9 ~~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlD 87 (656)
T KOG1914|consen 9 PRERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLD 87 (656)
T ss_pred HHHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHh
Confidence 3344457899999999888887666 9999999999999999999999999999999999999999999998432 223
Q ss_pred hhH-HHHHHHHHhCCHHHHHH-------HH-Hh---cCCChhHHHHHHHHH---------HHcCCHHHHHHHHHHHHhhC
Q 005990 87 FNY-LKAYCLYRQNRLDEALE-------SL-KI---QENNPATMLLKSQIL---------YRSGEMDACVEFYQKLQKSK 145 (666)
Q Consensus 87 ~~~-~~a~~~~~~g~~~~A~~-------~l-~~---~~~~~~~~~~la~~~---------~~~g~~~~A~~~~~~~l~~~ 145 (666)
+|- -+-|+--..|+...+.. +. ++ .+....+|.-.+..+ ..+.+.+.-.++|++++..-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 332 22222222333222221 11 11 222333443333332 22335556677888887643
Q ss_pred CChhH------------HHHHHH--H--HHcCChhHHHHHHHHhhhc-------CCC-----------hHHHHHHHHHHH
Q 005990 146 IDSLE------------INFVAG--L--ISAGRASEVQKTLDSLRVK-------ATS-----------SFELAYNTACSL 191 (666)
Q Consensus 146 p~~~~------------~~l~~~--~--~~~g~~~~A~~~~~~~~~~-------~~~-----------~~~~~~~la~~~ 191 (666)
-++.+ +|...+ + -....|..|...++++... +|. ..+.|.++...-
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 33333 222111 1 1133455566666554321 111 123344433332
Q ss_pred HHhcCH------H--HHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCC-------hHHHHHHHHHH
Q 005990 192 AEMNKY------T--EAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGN-------TQEAFGAYTDI 256 (666)
Q Consensus 192 ~~~g~~------~--~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~eA~~~~~~~ 256 (666)
...+-- - .-.-.|++++..-.-. .++.-+........+.++...|+ .+++..+|+++
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~--------peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~ 319 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYH--------PEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERA 319 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHH
Confidence 221110 0 0111223332221110 11111111222233333334443 67777888877
Q ss_pred HhhCCCCHhHHHHHHhhhhhccCCC-ChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHH
Q 005990 257 IKRNLADESSFAVAVNNLVALKGPK-DVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQ 335 (666)
Q Consensus 257 l~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~ 335 (666)
+............+....-....+. ........+++++... ...+ ..++.++.....+..-...
T Consensus 320 I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~----------~~~~-----tLv~~~~mn~irR~eGlka 384 (656)
T KOG1914|consen 320 IEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE----------DIDL-----TLVYCQYMNFIRRAEGLKA 384 (656)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh----------ccCC-----ceehhHHHHHHHHhhhHHH
Confidence 7533222111111111110000000 0001111111111100 0011 1122233333445555677
Q ss_pred HHHHHHhccccCCCCchHHHHHHHH-HHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcC
Q 005990 336 ARELVAALPDMFPDSVMPLLLQAAV-LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD 414 (666)
Q Consensus 336 A~~~~~~~~~~~p~~~~~~~~~a~~-~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 414 (666)
|+.+|.++.+.--....++...|.+ |...++..-|.++|+--+..+++.+. ..+.....+...|+-..|..+|++++.
T Consensus 385 aR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~-yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 385 ARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPE-YVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChH-HHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 8888888866533332333333332 44578899999999999999888655 666666777888999999999998876
Q ss_pred C--CC--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 005990 415 I--QH--MPATVATLVALKERAGDIDGAAAVLDSAIKWWL 450 (666)
Q Consensus 415 ~--~~--~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~ 450 (666)
. .+ .-.+|..+...-..-|+...+.++-++-...++
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 5 22 446777777777778888777777666665554
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.43 E-value=1.7e-05 Score=67.51 Aligned_cols=141 Identities=21% Similarity=0.178 Sum_probs=113.6
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcC
Q 005990 101 LDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQK-SKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKA 177 (666)
Q Consensus 101 ~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 177 (666)
+.+|.+.++..| ...-.+.+|..+...|++.||...|++++. ..-++.. ..++.+.+..+++..|...++.+.+.+
T Consensus 76 ~Rea~~~~~~Ap-Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 76 LREATEELAIAP-TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred HHHHHHHHhhch-hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 445555555554 345567889999999999999999999986 3444444 788888899999999999999998877
Q ss_pred CC--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHH
Q 005990 178 TS--SFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTD 255 (666)
Q Consensus 178 ~~--~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~ 255 (666)
|. +++....+|..+...|.+.+|+..|+.++...|.. .+....+..+..+|+..+|..-|..
T Consensus 155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~----------------~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP----------------QARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH----------------HHHHHHHHHHHHhcchhHHHHHHHH
Confidence 64 67778888999999999999999999999988642 3666778889999999998888776
Q ss_pred HHh
Q 005990 256 IIK 258 (666)
Q Consensus 256 ~l~ 258 (666)
+.+
T Consensus 219 v~d 221 (251)
T COG4700 219 VVD 221 (251)
T ss_pred HHH
Confidence 653
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.42 E-value=1e-06 Score=64.88 Aligned_cols=65 Identities=22% Similarity=0.180 Sum_probs=47.3
Q ss_pred HhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHH
Q 005990 362 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVA 427 (666)
Q Consensus 362 ~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~ 427 (666)
+..|++++|+..|++++..+|++.. +++.++.+|+..|++++|..++++++...| ++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPE-ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4577788888888888888887654 777788888888888888888888877777 4655555543
No 190
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.41 E-value=5.7e-05 Score=68.86 Aligned_cols=183 Identities=12% Similarity=0.082 Sum_probs=110.5
Q ss_pred HHHHHHcCChhHHHHHHHHhhhcCCC---hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhh
Q 005990 154 VAGLISAGRASEVQKTLDSLRVKATS---SFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELA 230 (666)
Q Consensus 154 ~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 230 (666)
|...+..|++++|...|+.+...+|. ...+...++.+++..+++++|+..+++-+.+.|.+. +..
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~------------n~d 108 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP------------NAD 108 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC------------Chh
Confidence 33344444555555555544443332 344566666677777777777777777777766542 222
Q ss_pred hHHHHHHHHHHH--------cCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhh
Q 005990 231 PIAVQLAYVQQL--------LGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQ 302 (666)
Q Consensus 231 ~~~~~la~~~~~--------~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 302 (666)
-+++..|.++.. +.-..+|+..|+.++...|++.- ..++...+..+.
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y-----------------a~dA~~~i~~~~-------- 163 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY-----------------APDAKARIVKLN-------- 163 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc-----------------hhhHHHHHHHHH--------
Confidence 355555555443 22345677788888888887642 123333332210
Q ss_pred hhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCc---hHHHHHHHHHHhhCChhHHHHHHHHHHh
Q 005990 303 LARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAE 379 (666)
Q Consensus 303 ~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~l~~~~~ 379 (666)
.. ........+..|+..|.+..|+.-++.+++.+|+.. .++..+..+|...|-.++|.+.-.-+-.
T Consensus 164 ------d~-----LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 164 ------DA-----LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ------HH-----HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 01 111123447889999999999999999999888754 5677777888899999888876544434
Q ss_pred hCCCh
Q 005990 380 KLPDK 384 (666)
Q Consensus 380 ~~p~~ 384 (666)
..|++
T Consensus 233 N~p~s 237 (254)
T COG4105 233 NYPDS 237 (254)
T ss_pred cCCCC
Confidence 44553
No 191
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.40 E-value=0.00039 Score=66.11 Aligned_cols=226 Identities=20% Similarity=0.229 Sum_probs=180.6
Q ss_pred HHHHHHHHHhh-hccHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--c---chhhhHHHHH
Q 005990 22 DLFTSLNRHIE-RSEFEQAVKVADQVLSTNPS--DEDAMRCKVVALIKADNIDDALSTIQSSQK--F---TFDFNYLKAY 93 (666)
Q Consensus 22 ~l~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~--~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~~a~ 93 (666)
.....+..... .+.+..+...+..++...+. ........+..+...+.+..+...+..... . ....++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (291)
T COG0457 24 ALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGL 103 (291)
T ss_pred HHHHhhhhhhHHHhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHH
Confidence 33444444433 47788888999999888876 378889999999999999999999998753 1 2356668888
Q ss_pred HHHHhCCHHHHHHHHHhc----CCChhHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCC--hhH---HHHHHHHHHcCCh
Q 005990 94 CLYRQNRLDEALESLKIQ----ENNPATMLLKSQ-ILYRSGEMDACVEFYQKLQKSKID--SLE---INFVAGLISAGRA 163 (666)
Q Consensus 94 ~~~~~g~~~~A~~~l~~~----~~~~~~~~~la~-~~~~~g~~~~A~~~~~~~l~~~p~--~~~---~~l~~~~~~~g~~ 163 (666)
++...+.+..++..+... +.+.......+. ++...|+++.|+..|.+++...|. ... ...+..+...+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (291)
T COG0457 104 LLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRY 183 (291)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCH
Confidence 889999999999999873 223345555666 899999999999999999876662 222 5555557778999
Q ss_pred hHHHHHHHHhhhcCCC-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHH
Q 005990 164 SEVQKTLDSLRVKATS-SFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQL 242 (666)
Q Consensus 164 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 242 (666)
+.++..+..++...+. ....+..++..+...+++..|...+..++...+. ....+..++.++..
T Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~ 248 (291)
T COG0457 184 EEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD---------------NAEALYNLALLLLE 248 (291)
T ss_pred HHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---------------cHHHHhhHHHHHHH
Confidence 9999999999999888 6889999999999999999999999999998853 11366777777777
Q ss_pred cCChHHHHHHHHHHHhhCCC
Q 005990 243 LGNTQEAFGAYTDIIKRNLA 262 (666)
Q Consensus 243 ~g~~~eA~~~~~~~l~~~~~ 262 (666)
.|.++++...+.+++...+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 249 LGRYEEALEALEKALELDPD 268 (291)
T ss_pred cCCHHHHHHHHHHHHHhCcc
Confidence 78899999999999988875
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.39 E-value=4.8e-05 Score=64.87 Aligned_cols=133 Identities=16% Similarity=0.131 Sum_probs=69.0
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc----chhhhHHHHHHHHHhCCHHHHHHHHHh
Q 005990 35 EFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKF----TFDFNYLKAYCLYRQNRLDEALESLKI 110 (666)
Q Consensus 35 ~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~a~~~~~~g~~~~A~~~l~~ 110 (666)
|.+..+....+.+...|.. .-.+.++.++..+|++.||...|+++..- ++.+.+.++...+..+++.+|...++.
T Consensus 71 dP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 4444555555555555533 34556666777777777777777666321 234444555555555555555555544
Q ss_pred ----cCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-HHHHHHHHHcCChhHHHH
Q 005990 111 ----QEN--NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-INFVAGLISAGRASEVQK 168 (666)
Q Consensus 111 ----~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~l~~~~~~~g~~~~A~~ 168 (666)
.|. .+....++|..+...|++.+|...|+.++...|+... +.++..+..+|+.+++..
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 111 3444455555555555555555555555555444433 444444555554444443
No 193
>PRK11906 transcriptional regulator; Provisional
Probab=98.38 E-value=8.8e-06 Score=80.61 Aligned_cols=153 Identities=10% Similarity=0.036 Sum_probs=124.1
Q ss_pred HHHHHHHHhhC---ChhHHHHHHHHHH---hhCCChhHHHHHHHHHHHHHc---------CChhHHHHHHhcCcCCCC-C
Q 005990 355 LLQAAVLVREN---KAGKAEELLGQFA---EKLPDKSKIILLARAQVAAAA---------NHPFIAAESLAKIPDIQH-M 418 (666)
Q Consensus 355 ~~~a~~~~~~g---~~~~A~~~l~~~~---~~~p~~~~~~~~~la~~~~~~---------g~~~~A~~~l~~~~~~~~-~ 418 (666)
+.+|......+ ..+.|+.+|.+++ ..+|+... ++-.++.++... .+..+|.++.++++++++ +
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~-a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTE-CYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHH-HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 55666555544 3568899999999 88888665 777788777633 345688899999999999 9
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC--hHHH
Q 005990 419 PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS--IEAL 496 (666)
Q Consensus 419 ~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~l 496 (666)
+..+..+|.+....++++.|...|++|+.+.|+. ...|...|+++.-.|+.++|.+.++++++++|. ...+
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~-------A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI-------ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 9999999999999999999999999999987543 347888899999999999999999999999998 3344
Q ss_pred HHHHH-hhccCChhhHHHHH
Q 005990 497 VGLVT-TSAHVDVDKAESYE 515 (666)
Q Consensus 497 ~~l~~-~~~~~d~~~a~~~~ 515 (666)
..++. .|....++.+..+-
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 411 IKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred HHHHHHHHcCCchhhhHHHH
Confidence 55555 88888888887763
No 194
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.5e-06 Score=81.22 Aligned_cols=144 Identities=13% Similarity=0.015 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcC
Q 005990 231 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 310 (666)
Q Consensus 231 ~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~ 310 (666)
...-.-|..|++.|+|..|...|++++..-..+. ..+. +-.+.+
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~---------------~~~~-ee~~~~-------------------- 252 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRR---------------SFDE-EEQKKA-------------------- 252 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccc---------------cCCH-HHHHHH--------------------
Confidence 4556778999999999999999999886433211 0000 001111
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHH
Q 005990 311 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL 390 (666)
Q Consensus 311 ~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 390 (666)
..-...+..|++.+++..+.|.+|+..++.++...|++.-+++..|.++...|+++.|+..|+++++..|.|.. +..
T Consensus 253 --~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka-~~~ 329 (397)
T KOG0543|consen 253 --EALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA-ARA 329 (397)
T ss_pred --HHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH-HHH
Confidence 11122356788999999999999999999999999999999999999999999999999999999999999744 777
Q ss_pred HHHHHHHHcCChhHH-HHHHhcCc
Q 005990 391 ARAQVAAAANHPFIA-AESLAKIP 413 (666)
Q Consensus 391 ~la~~~~~~g~~~~A-~~~l~~~~ 413 (666)
.++.+..+...+.+. .++|..+.
T Consensus 330 el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 330 ELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 776666555444333 45555554
No 195
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.36 E-value=2.1e-05 Score=82.32 Aligned_cols=137 Identities=11% Similarity=0.054 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhhh---ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH--------HHHHHHhhhccchhhh
Q 005990 20 IEDLFTSLNRHIER---SEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDD--------ALSTIQSSQKFTFDFN 88 (666)
Q Consensus 20 ~~~l~~~~~~~~~~---~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~--------A~~~~~~~~~~~~~~~ 88 (666)
.-.++.++..++.. +++..|+.+|+++++.+|++..++-.++.++.....+.. +...+.++
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a-------- 410 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI-------- 410 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh--------
Confidence 44567777777654 448899999999999999999999988888765533321 11111111
Q ss_pred HHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-HHHHHHHHHcCChhHHH
Q 005990 89 YLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-INFVAGLISAGRASEVQ 167 (666)
Q Consensus 89 ~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~l~~~~~~~g~~~~A~ 167 (666)
... ...+.++.++..+|.++...|++++|...|++++..+|.... ..+|.++...|++++|+
T Consensus 411 ----------------~al-~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~ 473 (517)
T PRK10153 411 ----------------VAL-PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAA 473 (517)
T ss_pred ----------------hhc-ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 000 013335567777777777778888888888888887775332 77777778888888888
Q ss_pred HHHHHhhhcCCChH
Q 005990 168 KTLDSLRVKATSSF 181 (666)
Q Consensus 168 ~~~~~~~~~~~~~~ 181 (666)
+.|++++.++|..+
T Consensus 474 ~~~~~A~~L~P~~p 487 (517)
T PRK10153 474 DAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHhcCCCCc
Confidence 88888888777655
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.0013 Score=59.70 Aligned_cols=277 Identities=16% Similarity=0.185 Sum_probs=174.5
Q ss_pred CcHHHHHHHHHHHhhhccHHHHHHHHHHHHhc-------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc
Q 005990 18 PPIEDLFTSLNRHIERSEFEQAVKVADQVLST-------------NPS-DEDAMRCKVVALIKADNIDDALSTIQSSQKF 83 (666)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~-------------~p~-~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~ 83 (666)
+.++.-|.-+..+...-++-.++..+-..+.. .|. +...|.....++.++..+++|...++....+
T Consensus 19 d~~~~~f~~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~t~~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~l 98 (366)
T KOG2796|consen 19 DSVEQSFVGLKQLISCRNWRAAVDLCGRLLTAHGQGYGKSGLLTSHTTDSLQLWTVRLALLVKLRLFQNAEMELEPFGNL 98 (366)
T ss_pred CCchhhhhhHHHHHHhhhhHHHHhhhHHHHHHHhhhhhhhheeeccchhHHHHHHHHHHHHHHHhhhHHHHhhhhhhccC
Confidence 44555555555555555555555555544332 121 2445555566666666666666655555333
Q ss_pred c-hhhhHHHHHHHHHhCCHHHHHHHHHh-cCC------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHH
Q 005990 84 T-FDFNYLKAYCLYRQNRLDEALESLKI-QEN------NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVA 155 (666)
Q Consensus 84 ~-~~~~~~~a~~~~~~g~~~~A~~~l~~-~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~ 155 (666)
+ ++++|+. +-. .|+ --....+.|.+....|...+.+.-+..+...- .....
T Consensus 99 D~pdl~Yey----------------~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~~V-----~~ii~ 157 (366)
T KOG2796|consen 99 DQPDLYYEY----------------YPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKTVV-----SKILA 157 (366)
T ss_pred CCcceeeee----------------ccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-----HHHHH
Confidence 2 2222110 000 111 11334556777777888887776655543211 01111
Q ss_pred HHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHH
Q 005990 156 GLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQ 235 (666)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (666)
.+......+..+..+++=+ ..+.|.++.++...|.|.-.+..+.+.++.++. .+. .....
T Consensus 158 ~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e---------~~p-----~L~s~ 217 (366)
T KOG2796|consen 158 NLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE---------QEP-----QLLSG 217 (366)
T ss_pred HHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc---------ccH-----HHHHH
Confidence 1111122233444444332 237788899999999999999999999997742 221 36678
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHH
Q 005990 236 LAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQ 315 (666)
Q Consensus 236 la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q 315 (666)
||.+..+.|+.+.|..+|+.+-+... ++...|
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~------------------------------------------------kL~~~q 249 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQ------------------------------------------------KLDGLQ 249 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHh------------------------------------------------hhhccc
Confidence 89999999999999999987753221 000001
Q ss_pred -HHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCC
Q 005990 316 -REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD 383 (666)
Q Consensus 316 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~ 383 (666)
...+..|.+.+++-++++.+|...+.+++..+|.++.+....|.++...|+..+|++.++.++...|.
T Consensus 250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 11234566888899999999999999999999999999999999999999999999999999999887
No 197
>PRK11906 transcriptional regulator; Provisional
Probab=98.35 E-value=3.9e-05 Score=76.14 Aligned_cols=160 Identities=9% Similarity=0.042 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhhhc---cHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---CC------HHHHHHHHHhhhccc
Q 005990 20 IEDLFTSLNRHIERS---EFEQAVKVADQVL---STNPSDEDAMRCKVVALIKA---DN------IDDALSTIQSSQKFT 84 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~---~~~~A~~~~~~~l---~~~p~~~~a~~~~~~~~~~~---g~------~~~A~~~~~~~~~~~ 84 (666)
+++++.++...+..+ ..+.|+.+|.+++ .++|+...++..++.|++.. |- ..+|+.+
T Consensus 255 ~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~-------- 326 (458)
T PRK11906 255 LSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALEL-------- 326 (458)
T ss_pred hhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH--------
Confidence 346677777775444 5678999999999 89999999999999998764 11 1222222
Q ss_pred hhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCC
Q 005990 85 FDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGR 162 (666)
Q Consensus 85 ~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~ 162 (666)
|...++-.+.|+.++..+|.++...++++.|+..|++++..+|+... +..+.++...|+
T Consensus 327 -------------------A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 327 -------------------LDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK 387 (458)
T ss_pred -------------------HHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Confidence 23334446678888888888888888888888888888888888777 666666777888
Q ss_pred hhHHHHHHHHhhhcCCChHHHHHHHHHH-HHHhcCHHHHHHHHHH
Q 005990 163 ASEVQKTLDSLRVKATSSFELAYNTACS-LAEMNKYTEAEQLLLT 206 (666)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~l~~ 206 (666)
.++|++.+++++.++|.-..+-...-++ .+-....++|+.+|-+
T Consensus 388 ~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 388 IEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 8888888888888887655444444444 4444556667666644
No 198
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.35 E-value=4.9e-06 Score=76.49 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=85.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhccccCCCCc---hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChh--HHHHHHHHH
Q 005990 320 YANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS--KIILLARAQ 394 (666)
Q Consensus 320 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~--~~~~~~la~ 394 (666)
.|+.+.-++..|+|..|...|...++.+|++. .+++.++.+++.+|++++|...|..+++.+|+++ .+.++.++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 57778889999999999999999999999865 7889999999999999999999999999888753 357888888
Q ss_pred HHHHcCChhHHHHHHhcCcCCCC
Q 005990 395 VAAAANHPFIAAESLAKIPDIQH 417 (666)
Q Consensus 395 ~~~~~g~~~~A~~~l~~~~~~~~ 417 (666)
+....|+.++|...|+++++..|
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCC
Confidence 88999999999999999888888
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.34 E-value=1e-05 Score=66.01 Aligned_cols=99 Identities=21% Similarity=0.254 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcC
Q 005990 231 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 310 (666)
Q Consensus 231 ~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~ 310 (666)
.+.+++|.++...|+.++|+.+|++++.....+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~---------------------------------------------- 35 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA---------------------------------------------- 35 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch----------------------------------------------
Confidence 3788999999999999999999999997655432
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCC---CchHHHHHHHHHHhhCChhHHHHHHHHHHh
Q 005990 311 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD---SVMPLLLQAAVLVRENKAGKAEELLGQFAE 379 (666)
Q Consensus 311 ~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~ 379 (666)
+.......++..+...|++++|..++++....+|+ +..+...++.++...|++++|+..+-.++.
T Consensus 36 ----~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 36 ----DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11112344578888999999999999999998888 556778888899999999999998877664
No 200
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.32 E-value=1.2e-05 Score=63.99 Aligned_cols=109 Identities=18% Similarity=0.082 Sum_probs=89.7
Q ss_pred HHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhH
Q 005990 153 FVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPI 232 (666)
Q Consensus 153 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (666)
-+.++...|+.+.|++.|.+++...|..+.++.|.+..+.-.|+.++|+.-+.+++++.... -..-..+
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-----------trtacqa 117 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-----------TRTACQA 117 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-----------chHHHHH
Confidence 35567778999999999999999999999999999999999999999999999999987321 0223368
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHh
Q 005990 233 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVN 272 (666)
Q Consensus 233 ~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~ 272 (666)
+++.|.+|..+|+.+.|..-|+.+-++...-.....+..|
T Consensus 118 ~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lN 157 (175)
T KOG4555|consen 118 FVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVELN 157 (175)
T ss_pred HHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999999999998877544333333333
No 201
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.32 E-value=2.2e-05 Score=65.09 Aligned_cols=67 Identities=15% Similarity=0.263 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhhccch
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSD---EDAMRCKVVALIKADNIDDALSTIQSSQKFTF 85 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 85 (666)
+...++..+...++.|+|++|++.++.+....|.. ..+...++.+|+..++|++|+..+++..++.|
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 56799999999999999999999999999998864 67889999999999999999999999977654
No 202
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.32 E-value=0.0097 Score=64.90 Aligned_cols=424 Identities=13% Similarity=0.099 Sum_probs=232.5
Q ss_pred HHHHHHHHHHHhc-CCC---CHHHHHHHHHHHH-HcCCHHHHHHHHHhhhccc---------hhhhHHHHHHHHHhCCHH
Q 005990 37 EQAVKVADQVLST-NPS---DEDAMRCKVVALI-KADNIDDALSTIQSSQKFT---------FDFNYLKAYCLYRQNRLD 102 (666)
Q Consensus 37 ~~A~~~~~~~l~~-~p~---~~~a~~~~~~~~~-~~g~~~~A~~~~~~~~~~~---------~~~~~~~a~~~~~~g~~~ 102 (666)
..|+.+++-+++. .+. +..+...+|.+|+ ...++++|...++++..+. -.+.+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 3467788877742 222 2566777888877 7899999999999994332 133446677777777766
Q ss_pred HHHHHHHhc-------CCChhH--H-HHHHHHHHHcCCHHHHHHHHHHHHhhC--CChhH------HHHHHHHHHcCChh
Q 005990 103 EALESLKIQ-------ENNPAT--M-LLKSQILYRSGEMDACVEFYQKLQKSK--IDSLE------INFVAGLISAGRAS 164 (666)
Q Consensus 103 ~A~~~l~~~-------~~~~~~--~-~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~------~~l~~~~~~~g~~~ 164 (666)
|...+++. +..... + ++.+..+...+++..|++.++.+.... ..+.. +..+.+....+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 87777662 222222 2 233555555589999999999987643 23333 33344455567777
Q ss_pred HHHHHHHHhhhc----------CCChHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHh---hhhhc-----cCCC-C--C
Q 005990 165 EVQKTLDSLRVK----------ATSSFELAYNTA--CSLAEMNKYTEAEQLLLTARRI---GQETL-----TDDN-F--A 221 (666)
Q Consensus 165 ~A~~~~~~~~~~----------~~~~~~~~~~la--~~~~~~g~~~~A~~~l~~a~~~---~~~~~-----~~~~-~--~ 221 (666)
++++.++.+... .+....+++.+- ++++..|++..+...+.+.-.. ..... ..++ + .
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~ 276 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN 276 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence 788877766331 122334444433 3567788877777665554443 32221 0110 0 0
Q ss_pred -----------hh-----hHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhH
Q 005990 222 -----------ED-----DIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVND 285 (666)
Q Consensus 222 -----------~~-----~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (666)
+. ..+.-.+-+++.-|..+...|..+.|.++++++++.-... . .........
T Consensus 277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~-----------~-~~~~~~~~~ 344 (608)
T PF10345_consen 277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKL-----------K-IKSPSAPSE 344 (608)
T ss_pred cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHh-----------h-ccCCCCCCc
Confidence 00 0011122344444556666777779999998887532110 0 000000000
Q ss_pred HHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhcccc---CCC------CchHHHH
Q 005990 286 SLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM---FPD------SVMPLLL 356 (666)
Q Consensus 286 a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~------~~~~~~~ 356 (666)
.+..+.+ . ...-..-...+.+..+...+-.+++..|...+..+... .|. .+..+++
T Consensus 345 sl~~~~~---~------------~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL 409 (608)
T PF10345_consen 345 SLSEASE---R------------IQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYL 409 (608)
T ss_pred CHHHHHH---h------------HHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHH
Confidence 0000000 0 00000001123455577788899999998888877543 222 2466788
Q ss_pred HHHHHHhhCChhHHHHHHH--------HHHhhCCChhH--HHHHHHHHHHHHcCChhH----HHHHHhcCcC---CCCCh
Q 005990 357 QAAVLVRENKAGKAEELLG--------QFAEKLPDKSK--IILLARAQVAAAANHPFI----AAESLAKIPD---IQHMP 419 (666)
Q Consensus 357 ~a~~~~~~g~~~~A~~~l~--------~~~~~~p~~~~--~~~~~la~~~~~~g~~~~----A~~~l~~~~~---~~~~~ 419 (666)
.|..+...|+.+.|...|. .+....+.+.. .+.+.++.++...+.-.. +..+++.+.. ..++.
T Consensus 410 ~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~ 489 (608)
T PF10345_consen 410 LGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNS 489 (608)
T ss_pred HHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccH
Confidence 8888889999999999998 44444444333 233344555554444222 5555555433 22322
Q ss_pred h--HH-HHHHHHHHHc--CChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHh
Q 005990 420 A--TV-ATLVALKERA--GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT 489 (666)
Q Consensus 420 ~--~~-~~l~~~~~~~--g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 489 (666)
. .+ ..+.+.+... -...++...+..+++..-+..+...-...++..++..++ .|+..+.......++..
T Consensus 490 ~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~ 563 (608)
T PF10345_consen 490 YNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQL 563 (608)
T ss_pred HHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 2 22 2333333322 233488889998888771122222222234555566666 78888877777666543
No 203
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.32 E-value=5.3e-06 Score=82.05 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=65.9
Q ss_pred CCCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHhhhcc
Q 005990 14 SQPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDA---MRCKVVALIKADNIDDALSTIQSSQKF 83 (666)
Q Consensus 14 ~~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a---~~~~~~~~~~~g~~~~A~~~~~~~~~~ 83 (666)
+.+|+...+++..+..++..|+|++|+..|+++|+++|++.++ |+.+|.||..+|++++|+..|+++..+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999999855 999999999999999999999999664
No 204
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=6.1e-05 Score=69.79 Aligned_cols=128 Identities=15% Similarity=0.152 Sum_probs=105.9
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch--hh-----hHHH
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF--DF-----NYLK 91 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~-----~~~~ 91 (666)
..+..+..+...+..|++.+|...+..++...|.+.++...++.||+..|+++.|..++........ .. ..++
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3455677788889999999999999999999999999999999999999999999999999743321 11 1233
Q ss_pred HHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 005990 92 AYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKI 146 (666)
Q Consensus 92 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 146 (666)
..-....++..+....+...|++..+.+.+|..+...|+.++|++.+-.+++.+-
T Consensus 213 l~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 213 LEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3333446777888888888999999999999999999999999999988887643
No 205
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.28 E-value=0.0064 Score=61.11 Aligned_cols=398 Identities=13% Similarity=0.087 Sum_probs=206.8
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCCh
Q 005990 103 EALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSS 180 (666)
Q Consensus 103 ~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 180 (666)
.+.+-++..|.+..+|+.|.+-+... .+++..+.|++++...|.... ...+...+..++|+....+|.+++...- +
T Consensus 8 ~~~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-n 85 (656)
T KOG1914|consen 8 NPRERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-N 85 (656)
T ss_pred CHHHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-h
Confidence 34667777899999999999987766 899999999999998888776 5666667778899999999998876422 2
Q ss_pred HHHHH-HHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHH---------HHcCChHHHH
Q 005990 181 FELAY-NTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQ---------QLLGNTQEAF 250 (666)
Q Consensus 181 ~~~~~-~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~---------~~~g~~~eA~ 250 (666)
.++|. .+-.+.-..|+...+....-+|..+.-....-+ .....+|...+..+ ..+.+.+.-.
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~d--------i~s~siW~eYi~FL~~vea~gk~ee~QRI~~vR 157 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMD--------IKSYSIWDEYINFLEGVEAVGKYEENQRITAVR 157 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccC--------cccchhHHHHHHHHHcccccccHHHHHHHHHHH
Confidence 44443 233444455666666666666655543322111 11113444433322 2233666677
Q ss_pred HHHHHHHhhCCCCHhHHH-------HHHhhhhh----ccCCCChhHHHHHhHHHhhhh-------h-----------hhh
Q 005990 251 GAYTDIIKRNLADESSFA-------VAVNNLVA----LKGPKDVNDSLKKLDRIKEKD-------M-----------QNF 301 (666)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~-------~~~~~l~~----~~~~~~~~~a~~~l~~~~~~~-------~-----------~~~ 301 (666)
+.|++++..--.+...+. ...|.+.+ .....++..+.+...++.... + +..
T Consensus 158 riYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv 237 (656)
T KOG1914|consen 158 RIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQV 237 (656)
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHH
Confidence 888888754333322111 11111111 011222223333332221110 0 000
Q ss_pred hhhHHh-----hcCC-----C-HHHHHHHHHHHHHH---------------HHHcCC--------------hHHHHHHHH
Q 005990 302 QLARVL-----DLRL-----S-PKQREAIYANRVLL---------------LLHANK--------------MDQARELVA 341 (666)
Q Consensus 302 ~~~~~l-----~~~~-----~-~~q~~~~~~~~a~~---------------~~~~~~--------------~~~A~~~~~ 341 (666)
.....+ ...+ + ..++....++.+.+ +...++ .+++..+++
T Consensus 238 ~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yE 317 (656)
T KOG1914|consen 238 ELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYE 317 (656)
T ss_pred HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHH
Confidence 000000 0000 0 01111111222221 111222 234444444
Q ss_pred hccccCCC-CchHHHHHHHHHHh---hCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC
Q 005990 342 ALPDMFPD-SVMPLLLQAAVLVR---ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH 417 (666)
Q Consensus 342 ~~~~~~p~-~~~~~~~~a~~~~~---~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 417 (666)
..+..--. +..+++.++..-.. ..+++.-..++++++.....+..-++..+.....+..-...|..+|.++.+...
T Consensus 318 r~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r 397 (656)
T KOG1914|consen 318 RAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR 397 (656)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC
Confidence 44332111 11222222221111 112444555566655543332222444444455566667888888888876544
Q ss_pred Ch-hHH-HHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHh--cCC-
Q 005990 418 MP-ATV-ATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT--HGS- 492 (666)
Q Consensus 418 ~~-~~~-~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~- 492 (666)
.+ .++ .....=|..+++..-|..+|+-.+..+++.+ . +.....+++...|+-..|..+|++++.. .|+
T Consensus 398 ~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p----~---yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 398 TRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSP----E---YVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred CcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCh----H---HHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 22 222 2222234567889999999999988875433 2 4445678888999999999999999987 444
Q ss_pred -hHHHHHHHHhh-ccCChhhHHHHHhc
Q 005990 493 -IEALVGLVTTS-AHVDVDKAESYEKR 517 (666)
Q Consensus 493 -~~~l~~l~~~~-~~~d~~~a~~~~~~ 517 (666)
.......+.-- ..+|+..+..+.++
T Consensus 471 s~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 471 SKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 22333333322 35667666666544
No 206
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.24 E-value=1.2e-05 Score=66.60 Aligned_cols=116 Identities=14% Similarity=0.032 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCCh--hHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhH---HHHH
Q 005990 352 MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK--SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPAT---VATL 425 (666)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~---~~~l 425 (666)
..++..|...+..|+|.+|++.|+.+....|.. ...+.+.++.+|...+++++|+..+++.+.++| +|.+ ++..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 566777777888888888888888888877753 234677777888888888888888888888877 4433 3444
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCCh
Q 005990 426 VALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI 493 (666)
Q Consensus 426 ~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 493 (666)
|..+..+.. ..|.... ..-...+....|...|++++...|++
T Consensus 91 gL~~~~~~~-----~~~~~~~---------------------~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 91 GLSYYEQDE-----GSLQSFF---------------------RSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHhh-----hHHhhhc---------------------ccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 444433322 1222211 11111224568999999999999984
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.24 E-value=6.8e-06 Score=62.42 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhc
Q 005990 420 ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 490 (666)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 490 (666)
.++..+|.+|...|++++|+.+|+++++.........+....++..+|.++...|++++|+++|++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45788999999999999999999999999544433334567889999999999999999999999998753
No 208
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.0019 Score=57.64 Aligned_cols=151 Identities=13% Similarity=0.120 Sum_probs=91.9
Q ss_pred cCCHHHHHHHHHhhhcc---------chhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHH
Q 005990 67 ADNIDDALSTIQSSQKF---------TFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEF 137 (666)
Q Consensus 67 ~g~~~~A~~~~~~~~~~---------~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 137 (666)
.++|++|.++|.++... ....+...|.++.+.|.-. +....+.-|.-+++.++.++|+.+
T Consensus 27 ~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skh-----------Daat~YveA~~cykk~~~~eAv~c 95 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKH-----------DAATTYVEAANCYKKVDPEEAVNC 95 (288)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCch-----------hHHHHHHHHHHHhhccChHHHHHH
Confidence 35788888888777221 0122223333333333222 233334444555666677788877
Q ss_pred HHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhhhhhcc
Q 005990 138 YQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEM-NKYTEAEQLLLTARRIGQETLT 216 (666)
Q Consensus 138 ~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~l~~a~~~~~~~~~ 216 (666)
++.++.+ |..+|+|..|-.. +..+|.+|-.. .++++|+.+|+++-+....
T Consensus 96 L~~aieI------------yt~~Grf~~aAk~--------------~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~--- 146 (288)
T KOG1586|consen 96 LEKAIEI------------YTDMGRFTMAAKH--------------HIEIAEIYESDLQDFEKAIAHYEQAAEYYKG--- 146 (288)
T ss_pred HHHHHHH------------HHhhhHHHHHHhh--------------hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---
Confidence 7777654 5556666555432 33445555544 7888999999998877642
Q ss_pred CCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 005990 217 DDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLAD 263 (666)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~ 263 (666)
++....-...++-.|..-.+.++|.+|+.+|+++.....++
T Consensus 147 ------ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 147 ------EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred ------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11112223466777888888999999999999998766554
No 209
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.015 Score=62.87 Aligned_cols=154 Identities=15% Similarity=0.168 Sum_probs=98.0
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHH-HHHhCCHHHHHHHHHhcC
Q 005990 34 SEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYC-LYRQNRLDEALESLKIQE 112 (666)
Q Consensus 34 ~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~-~~~~g~~~~A~~~l~~~~ 112 (666)
-+.....++.++.=..+.. ..+.+.+..+-|++|..+|.+..-. ..-..+ .-..+.++.|.+..++.
T Consensus 1034 ad~trVm~YI~rLdnyDa~------~ia~iai~~~LyEEAF~ifkkf~~n-----~~A~~VLie~i~~ldRA~efAe~~- 1101 (1666)
T KOG0985|consen 1034 ADRTRVMEYINRLDNYDAP------DIAEIAIENQLYEEAFAIFKKFDMN-----VSAIQVLIENIGSLDRAYEFAERC- 1101 (1666)
T ss_pred cChHHHHHHHHHhccCCch------hHHHHHhhhhHHHHHHHHHHHhccc-----HHHHHHHHHHhhhHHHHHHHHHhh-
Confidence 3556677777775333322 2456677788899999999987221 111122 23456778887776664
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 005990 113 NNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLA 192 (666)
Q Consensus 113 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 192 (666)
+.+.+|..+|....+.|...+|++.|-++ .+|.+. .+...+....|.|++-+..+.-+.+...+.. +-..+..+|.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika--dDps~y-~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~-id~eLi~AyA 1177 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNY-LEVIDVASRTGKYEDLVKYLLMARKKVREPY-IDSELIFAYA 1177 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHH-HHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-chHHHHHHHH
Confidence 35789999999999999999999999664 334433 5556666778999998888876654322211 2222334445
Q ss_pred HhcCHHHHHHH
Q 005990 193 EMNKYTEAEQL 203 (666)
Q Consensus 193 ~~g~~~~A~~~ 203 (666)
..++..+-+++
T Consensus 1178 kt~rl~elE~f 1188 (1666)
T KOG0985|consen 1178 KTNRLTELEEF 1188 (1666)
T ss_pred HhchHHHHHHH
Confidence 55555544443
No 210
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=2.7e-05 Score=67.17 Aligned_cols=104 Identities=19% Similarity=0.191 Sum_probs=86.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCH
Q 005990 234 VQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSP 313 (666)
Q Consensus 234 ~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~ 313 (666)
-.-|.-++..|+|++|..-|..++...|.-. .
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~------------------------------------------------~ 130 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTS------------------------------------------------T 130 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCcccc------------------------------------------------H
Confidence 3446678889999999999999998887432 1
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChh
Q 005990 314 KQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS 385 (666)
Q Consensus 314 ~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~ 385 (666)
..+.+++.|.+.+++.++.++.|+..+.+++..+|....++..+|.+|.+..++++|+..|.++++.+|...
T Consensus 131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 223445677788999999999999999999999999888888889999999999999999999999998854
No 211
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=7.8e-05 Score=66.09 Aligned_cols=200 Identities=12% Similarity=0.081 Sum_probs=124.9
Q ss_pred HHHHHHcCChHHHHHHHHhcccc-----CCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChh-----HHHHHHHH
Q 005990 324 VLLLLHANKMDQARELVAALPDM-----FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS-----KIILLARA 393 (666)
Q Consensus 324 a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~-----~~~~~~la 393 (666)
+.+|-...+|..|-..|-++... ..++....+..+.-+++.++..+|+..++.+++...+.. ...+..++
T Consensus 41 an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~ia 120 (288)
T KOG1586|consen 41 ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIA 120 (288)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHH
Confidence 44444455555554444444222 112233334445555677799999999999888765422 12345678
Q ss_pred HHHHHc-CChhHHHHHHhcCcCCCCChh-------HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 005990 394 QVAAAA-NHPFIAAESLAKIPDIQHMPA-------TVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQE 465 (666)
Q Consensus 394 ~~~~~~-g~~~~A~~~l~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 465 (666)
.+|... .++++|+.+|+++.+.....+ .+.-.+..-...++|.+|+..|++.....-++.-........+..
T Consensus 121 EiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyflk 200 (288)
T KOG1586|consen 121 EIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLK 200 (288)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHH
Confidence 888765 899999999999877554111 234445556678999999999998876543332222233446667
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHhcCC------hHHHHHHHHhhccCChhhHHHHHhcCCCCCCCCC
Q 005990 466 AASFKLRHGREEDASHLFEELVKTHGS------IEALVGLVTTSAHVDVDKAESYEKRLKPLPGLNG 526 (666)
Q Consensus 466 l~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~l~~l~~~~~~~d~~~a~~~~~~l~~~~~~~~ 526 (666)
.|.+++...+.-.+...+++-...+|. -..+..|+.+....|. +.+.......+.++.
T Consensus 201 AgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~---e~fte~vkefDsisr 264 (288)
T KOG1586|consen 201 AGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDI---EKFTEVVKEFDSISR 264 (288)
T ss_pred HHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhH---HHHHHHHHhhhccch
Confidence 888899988999999999999999997 2234555555544444 444444333333333
No 212
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.16 E-value=0.0098 Score=58.56 Aligned_cols=405 Identities=12% Similarity=0.052 Sum_probs=206.4
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHH-----HHHHHH-HHHHHcCCHHH---HHHHHHhhhccchhhhHHHH
Q 005990 22 DLFTSLNRHIERSEFEQAVKVADQVLSTNPSDED-----AMRCKV-VALIKADNIDD---ALSTIQSSQKFTFDFNYLKA 92 (666)
Q Consensus 22 ~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----a~~~~~-~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~a 92 (666)
-+..++..+..++++.+|.++|.++.+..-+.+. ++-.+. .+|+ +++.+. -+..+++.....+.+.+-.+
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~ 86 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKA 86 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 4567788888999999999999998876544422 222222 2333 333332 33333333333445666788
Q ss_pred HHHHHhCCHHHHHHHHHhc----CC---------------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC----h
Q 005990 93 YCLYRQNRLDEALESLKIQ----EN---------------NPATMLLKSQILYRSGEMDACVEFYQKLQKS-KID----S 148 (666)
Q Consensus 93 ~~~~~~g~~~~A~~~l~~~----~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~----~ 148 (666)
...|+.+.+..|++.+..- .. +-..-+..|.++...|+|.++..++.+++.. -+. +
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~ 166 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWN 166 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhccc
Confidence 8889999999999987640 00 2233357788889999999999999988752 221 1
Q ss_pred hH------HHHHHHHHH----cCChhHHHHHHH-------Hhhhc------------------------CCCh-----HH
Q 005990 149 LE------INFVAGLIS----AGRASEVQKTLD-------SLRVK------------------------ATSS-----FE 182 (666)
Q Consensus 149 ~~------~~l~~~~~~----~g~~~~A~~~~~-------~~~~~------------------------~~~~-----~~ 182 (666)
.+ ..++..|.- ....+-+...|+ ++-.. -|.. ..
T Consensus 167 ~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq 246 (549)
T PF07079_consen 167 SDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQ 246 (549)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHH
Confidence 11 233444321 111111111111 11000 0110 00
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH--------HhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHH
Q 005990 183 LAYNTACSLAEMNKYTEAEQLLLTAR--------RIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYT 254 (666)
Q Consensus 183 ~~~~la~~~~~~g~~~~A~~~l~~a~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~ 254 (666)
++.+....|. .-+++--++.+...+ .+|..... ...+....++...+-.+-....++++..+|..++.
T Consensus 247 ~l~~We~~yv-~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~---~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 247 ILENWENFYV-HPNYDLVIEPLKQQFMSDPEQVGHFCEAIAS---SKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHhhcc-CCchhHHHHHHHHHHhcChHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 0111100000 011111111111111 11100000 00111112233344444445567888888888888
Q ss_pred HHHhhCCCCHhHHHHH-----HhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhc-CCCHHHHHHHHHHHHHHHH
Q 005990 255 DIIKRNLADESSFAVA-----VNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL-RLSPKQREAIYANRVLLLL 328 (666)
Q Consensus 255 ~~l~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~-~~~~~q~~~~~~~~a~~~~ 328 (666)
-....+|+....--.+ ..++++.. +.. ..-++.+ +.+.+.... .....|........|.-+.
T Consensus 323 lL~~ldp~~svs~Kllls~~~lq~Iv~~D-D~~-~Tklr~y----------L~lwe~~qs~DiDrqQLvh~L~~~Ak~lW 390 (549)
T PF07079_consen 323 LLKILDPRISVSEKLLLSPKVLQDIVCED-DES-YTKLRDY----------LNLWEEIQSYDIDRQQLVHYLVFGAKHLW 390 (549)
T ss_pred HHHhcCCcchhhhhhhcCHHHHHHHHhcc-hHH-HHHHHHH----------HHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 8877888765222111 11222211 111 1111111 111222222 2233344444455566778
Q ss_pred HcCC-hHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHH--------HHHHHHhh---CCC---hh-HHHHHHH
Q 005990 329 HANK-MDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEE--------LLGQFAEK---LPD---KS-KIILLAR 392 (666)
Q Consensus 329 ~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~--------~l~~~~~~---~p~---~~-~~~~~~l 392 (666)
..|. -+.|+.+++.++.-.+.+....... ..+-...|.+|+. .++..+.. .|- +. ..-.+.=
T Consensus 391 ~~g~~dekalnLLk~il~ft~yD~ec~n~v--~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNYDIECENIV--FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccccHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 8887 6788999988887766665221110 0111111222211 11222221 121 11 1122333
Q ss_pred HHHHHHcCChhHHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 005990 393 AQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSA 445 (666)
Q Consensus 393 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a 445 (666)
|+.+..+|++.++.-+-.-+..+.|+|.++..+|-+.....+|++|..+|...
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 55667899999999988888889999999999999999999999999999864
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.16 E-value=1e-05 Score=60.45 Aligned_cols=57 Identities=19% Similarity=0.130 Sum_probs=29.5
Q ss_pred HHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhh
Q 005990 156 GLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQ 212 (666)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 212 (666)
+|...+++++|+.+++.++..+|+++..++..|.+++..|++.+|+..|+++++.+|
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 344445555555555555555555555555555555555555555555555555444
No 214
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.15 E-value=0.00073 Score=64.13 Aligned_cols=193 Identities=20% Similarity=0.210 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch---hhhHHHHH-
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLS--TNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF---DFNYLKAY- 93 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~a~- 93 (666)
.......+..+...+++..++..+...+. ..+.....+...+.++...+++..++..+..+..... ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 45667778888899999999999999997 6778889999999999999999999999999965433 23445555
Q ss_pred HHHHhCCHHHHHHHHHhc----C---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-hhH--HHHHHHHHHcCCh
Q 005990 94 CLYRQNRLDEALESLKIQ----E---NNPATMLLKSQILYRSGEMDACVEFYQKLQKSKID-SLE--INFVAGLISAGRA 163 (666)
Q Consensus 94 ~~~~~g~~~~A~~~l~~~----~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~--~~l~~~~~~~g~~ 163 (666)
+++..|+++.|...+... + .........+..+...++++.|+..+..++...+. ... ..++..+...+.+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 899999999999999873 2 23445566666678899999999999999998777 343 8888888899999
Q ss_pred hHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhh
Q 005990 164 SEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQ 212 (666)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 212 (666)
+.|+..+..++...+.....+..++..+...+.++.+...+.+++...+
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999888777888888888877889999999999999884
No 215
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.00017 Score=67.43 Aligned_cols=161 Identities=12% Similarity=0.046 Sum_probs=131.1
Q ss_pred HHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhh-CCChh--HHHHHHHHHHHHHcC
Q 005990 324 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK-LPDKS--KIILLARAQVAAAAN 400 (666)
Q Consensus 324 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~-~p~~~--~~~~~~la~~~~~~g 400 (666)
+.+....|++.+|....+++++.+|.+..++-..-.+++..|+...-...+++++.. +++.+ ..+.-.++..+...|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 667788999999999999999999999888877778899999999999999999877 66532 224556677788999
Q ss_pred ChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhH
Q 005990 401 HPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDA 479 (666)
Q Consensus 401 ~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 479 (666)
-|++|.+...+++++++ +......++.++...|++.++.+...+--..|+...- -...-|.+.+-+++..+.|+.|
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~m---lasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWM---LASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhH---HHhhhhHHHHHhhhcccchhHH
Confidence 99999999999999999 7777788999999999999999999887666642211 1111233678888999999999
Q ss_pred HHHHHHHH
Q 005990 480 SHLFEELV 487 (666)
Q Consensus 480 ~~~~~~~l 487 (666)
.++|.+-+
T Consensus 267 leIyD~ei 274 (491)
T KOG2610|consen 267 LEIYDREI 274 (491)
T ss_pred HHHHHHHH
Confidence 99998754
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.14 E-value=1e-05 Score=60.57 Aligned_cols=63 Identities=22% Similarity=0.233 Sum_probs=52.9
Q ss_pred HHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhH
Q 005990 324 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK 386 (666)
Q Consensus 324 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 386 (666)
..+++..+++++|+++++.++..+|+++..++..|.++...|++.+|+..|+.+++..|++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 356778888888888888888888888888888888888888888888888888888887544
No 217
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.13 E-value=0.00014 Score=72.10 Aligned_cols=191 Identities=16% Similarity=0.103 Sum_probs=131.6
Q ss_pred CcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHH
Q 005990 18 PPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYR 97 (666)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~ 97 (666)
+....-........+..+...-++...++|+++|+.+++|..++.-. ..-..+|..+|+++.+... ..+........
T Consensus 166 D~~r~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE-~~lg~s~~~~~ 242 (539)
T PF04184_consen 166 DALRPAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGE-ASLGKSQFLQH 242 (539)
T ss_pred CccCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHH-Hhhchhhhhhc
Confidence 33444456666778899999999999999999999999998887532 2346788888888743321 11111111111
Q ss_pred hCCHHHHHHHHHhcCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH----HHHHHHHHHcCChhHHHHHHHH
Q 005990 98 QNRLDEALESLKIQEN-NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE----INFVAGLISAGRASEVQKTLDS 172 (666)
Q Consensus 98 ~g~~~~A~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~l~~~~~~~g~~~~A~~~~~~ 172 (666)
.|..-++ ...+..+ ...+...+|.++.++|+.+||++.|+.+++..|.... .+|..++...+.+.++..++.+
T Consensus 243 ~g~~~e~--~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 243 HGHFWEA--WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred ccchhhh--hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1211111 1111111 3456678999999999999999999999988775322 8999999999999999999988
Q ss_pred hhhc-CCChHHHHHHHHHHHHHh-cC---------------HHHHHHHHHHHHHhhhh
Q 005990 173 LRVK-ATSSFELAYNTACSLAEM-NK---------------YTEAEQLLLTARRIGQE 213 (666)
Q Consensus 173 ~~~~-~~~~~~~~~~la~~~~~~-g~---------------~~~A~~~l~~a~~~~~~ 213 (666)
--.. -|.+....|..|.+-.+. ++ -..|.+.+.+|++.+|-
T Consensus 321 YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 321 YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 7543 367788888877765442 21 13467889999998864
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.12 E-value=1e-05 Score=80.10 Aligned_cols=61 Identities=26% Similarity=0.242 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCCChHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKATSSFE---LAYNTACSLAEMNKYTEAEQLLLTARRIG 211 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 211 (666)
+|++.+|...|++++|+..|+++++.+|++.+ +|||+|++|..+|++++|+.+|++|+++.
T Consensus 79 ~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 79 VNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 66666666666666666666666667777664 49999999999999999999999999974
No 219
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.00076 Score=60.46 Aligned_cols=220 Identities=12% Similarity=0.032 Sum_probs=125.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcC
Q 005990 231 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 310 (666)
Q Consensus 231 ~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~ 310 (666)
..+..-+..|....+|++|...+.++.+-..++. ..|.+.+.++++
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnr-----------------slfhAAKayEqa----------------- 77 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR-----------------SLFHAAKAYEQA----------------- 77 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHH-----------------
Confidence 4556666777778889999988888875544433 233444444322
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHH
Q 005990 311 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL 390 (666)
Q Consensus 311 ~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 390 (666)
+.+.-....+.++..+++++. .+|...|..+.|-..++++...
T Consensus 78 -------------amLake~~klsEvvdl~eKAs--------------~lY~E~GspdtAAmaleKAak~---------- 120 (308)
T KOG1585|consen 78 -------------AMLAKELSKLSEVVDLYEKAS--------------ELYVECGSPDTAAMALEKAAKA---------- 120 (308)
T ss_pred -------------HHHHHHHHHhHHHHHHHHHHH--------------HHHHHhCCcchHHHHHHHHHHH----------
Confidence 444445555666665555542 3344455555554444443321
Q ss_pred HHHHHHHHcCChhHHHHHHhcCcCCCC-------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHH
Q 005990 391 ARAQVAAAANHPFIAAESLAKIPDIQH-------MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIM 463 (666)
Q Consensus 391 ~la~~~~~~g~~~~A~~~l~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 463 (666)
+..-++++|+++|++++.+-. ...++...+.++.+...+++|...|.+-..+....... ......+
T Consensus 121 ------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y-~~~~k~~ 193 (308)
T KOG1585|consen 121 ------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY-NSQCKAY 193 (308)
T ss_pred ------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc-ccHHHHH
Confidence 111222233333333221110 12234556777888888888888777665554332211 1221233
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHhc----CC-hHHHHHHHHhhccCChhhHHHHHhcCCCCCCCCCCChHHH
Q 005990 464 QEAASFKLRHGREEDASHLFEELVKTH----GS-IEALVGLVTTSAHVDVDKAESYEKRLKPLPGLNGVDVDSL 532 (666)
Q Consensus 464 ~~l~~~~~~~g~~~~A~~~~~~~l~~~----p~-~~~l~~l~~~~~~~d~~~a~~~~~~l~~~~~~~~~d~~~L 532 (666)
.....+++-..+|..|..+|+...++. ++ ..++-+|+.+|...|.+.+...++. +-++.+|.+-+
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kvl~s----p~~r~MDneya 263 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKVLSS----PTVRNMDNEYA 263 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHHHcC----hHhhhhhHHHH
Confidence 345566777789999999999866553 22 5677889999999999888776532 22456665544
No 220
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.09 E-value=0.0022 Score=62.20 Aligned_cols=251 Identities=14% Similarity=0.095 Sum_probs=150.0
Q ss_pred HHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHhHHHH
Q 005990 191 LAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLG-NTQEAFGAYTDIIKRNLADESSFAV 269 (666)
Q Consensus 191 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~eA~~~~~~~l~~~~~~~~~~~~ 269 (666)
....|+++.|..++.++-.+... .+|+.. ..++..+++.|.-....+ ++++|..+++++.+.-.....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~------~~~~~~-~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~---- 71 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNS------LDPDMA-EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK---- 71 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhc------CCcHHH-HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh----
Confidence 35689999999999999877631 114444 678899999999999999 999999999999865211000
Q ss_pred HHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChH---HHHHHHHhcccc
Q 005990 270 AVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMD---QARELVAALPDM 346 (666)
Q Consensus 270 ~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~---~A~~~~~~~~~~ 346 (666)
......+ ....+..+...++..++..+.++ +|...++.+...
T Consensus 72 ------~~~~~~~-----------------------------~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e 116 (278)
T PF08631_consen 72 ------MDKLSPD-----------------------------GSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE 116 (278)
T ss_pred ------ccccCCc-----------------------------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 0000001 01122234455577788777665 566777778888
Q ss_pred CCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHH-HHHcCChhHHHHHHhcCcCC--CCChh-HH
Q 005990 347 FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV-AAAANHPFIAAESLAKIPDI--QHMPA-TV 422 (666)
Q Consensus 347 ~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~-~~~~g~~~~A~~~l~~~~~~--~~~~~-~~ 422 (666)
+|+.+..+++.-.++.+.++.+.+.+.+.+++...+-....+-..+..+ .........|...+..++-. .+.+. ..
T Consensus 117 ~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~ 196 (278)
T PF08631_consen 117 YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWL 196 (278)
T ss_pred CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHH
Confidence 9998888877777877889999999999999876542112122222222 12234456677777666532 23222 21
Q ss_pred ----HHHHHHHHHcCChhHH--HHHHHHHHH----HHHHhccCc--chHHHHHHHHHHHHHhCCChhhHHHHHHHHH
Q 005990 423 ----ATLVALKERAGDIDGA--AAVLDSAIK----WWLNAMTED--NKLSVIMQEAASFKLRHGREEDASHLFEELV 487 (666)
Q Consensus 423 ----~~l~~~~~~~g~~~~A--~~~l~~a~~----~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 487 (666)
....++....++.... ++.+...+. ......... .....++...|...++.++|.+|..+|+-++
T Consensus 197 e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 197 EKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2222222222222222 333333333 111111100 1122344467888999999999999999766
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.08 E-value=0.0047 Score=64.51 Aligned_cols=122 Identities=15% Similarity=0.077 Sum_probs=101.4
Q ss_pred cCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhC---CChhHHHHHHHHHHHHHcCChhHHH
Q 005990 330 ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL---PDKSKIILLARAQVAAAANHPFIAA 406 (666)
Q Consensus 330 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~~~~la~~~~~~g~~~~A~ 406 (666)
....+.|.+++......+|+.....+..|.++...|+.++|+..|+.++... +......++.++.++.-+++|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4466789999999999999999999999999999999999999999877532 2223347888999999999999999
Q ss_pred HHHhcCcCCCC-ChhH-HHHHHHHHHHcCCh-------hHHHHHHHHHHHHHHH
Q 005990 407 ESLAKIPDIQH-MPAT-VATLVALKERAGDI-------DGAAAVLDSAIKWWLN 451 (666)
Q Consensus 407 ~~l~~~~~~~~-~~~~-~~~l~~~~~~~g~~-------~~A~~~l~~a~~~~~~ 451 (666)
..+..+.+... +..+ .+..|.++...|+. ++|..+|.++-.+...
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 99999998777 4444 47778888899999 7888888877666543
No 222
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.07 E-value=3.4e-05 Score=66.54 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-------HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHH
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-------INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTA 188 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 188 (666)
..+-.-|.-++..|+|++|..-|..+|...|.... .|.+.+++.++.++.|+..+.++++++|....++...|
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 34455677889999999999999999998877554 77889999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 189 CSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 189 ~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
.+|-.+..|++|++-|.+.++..|.
T Consensus 176 eayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999964
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.05 E-value=0.0084 Score=62.62 Aligned_cols=157 Identities=18% Similarity=0.143 Sum_probs=113.6
Q ss_pred HHHHcCChHHHHHHHHhccccCCC--CchHHHHH-H-----HHHH----hhCChhHHHHHHHHHHhhCCChhHHHHHHHH
Q 005990 326 LLLHANKMDQARELVAALPDMFPD--SVMPLLLQ-A-----AVLV----RENKAGKAEELLGQFAEKLPDKSKIILLARA 393 (666)
Q Consensus 326 ~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~-a-----~~~~----~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la 393 (666)
+.-..|+-+.++..+..+.+ ..+ .+.+.+.+ + ..++ .....+.|.+++......+|+... ..+..|
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~l-fl~~~g 274 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSAL-FLFFEG 274 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHH-HHHHHH
Confidence 34567899999999988766 332 12111111 1 1111 244677899999999999999766 888899
Q ss_pred HHHHHcCChhHHHHHHhcCcCCCC-----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 005990 394 QVAAAANHPFIAAESLAKIPDIQH-----MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS 468 (666)
Q Consensus 394 ~~~~~~g~~~~A~~~l~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~ 468 (666)
.++...|+.++|++.|++++.... ..-.++.+++++..+++|++|...|....+...- . ...+....|-
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-----S-ka~Y~Y~~a~ 348 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-----S-KAFYAYLAAA 348 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-----H-HHHHHHHHHH
Confidence 999999999999999998875333 2234688999999999999999999998875311 1 1124446688
Q ss_pred HHHhCCCh-------hhHHHHHHHHHHhc
Q 005990 469 FKLRHGRE-------EDASHLFEELVKTH 490 (666)
Q Consensus 469 ~~~~~g~~-------~~A~~~~~~~l~~~ 490 (666)
++...|+. ++|..+|.++....
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 88899998 88888888776543
No 224
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.0016 Score=59.13 Aligned_cols=222 Identities=12% Similarity=0.083 Sum_probs=149.7
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC------------------HHH-HHHHHHHHHHcCCHHHHHHHHHhhh
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSD------------------EDA-MRCKVVALIKADNIDDALSTIQSSQ 81 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------------------~~a-~~~~~~~~~~~g~~~~A~~~~~~~~ 81 (666)
.-+--+...+.+...+++|...++..-+.+..| +-+ ....+.+...+|+..+.+.-+....
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~ 149 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLK 149 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 334445555566666677766665544433211 111 2233455556677777666665542
Q ss_pred ccchhhhHHHHHHHHHhCCH-HHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-hhH--HHHHHHH
Q 005990 82 KFTFDFNYLKAYCLYRQNRL-DEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKID-SLE--INFVAGL 157 (666)
Q Consensus 82 ~~~~~~~~~~a~~~~~~g~~-~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~--~~l~~~~ 157 (666)
.. ......-.+++.. +..++..++- -..+.+.++.++...|.|.-.+..|.++++.+|. +.. ..++.+.
T Consensus 150 ~~-----V~~ii~~~e~~~~~ESsv~lW~KR--l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~ 222 (366)
T KOG2796|consen 150 TV-----VSKILANLEQGLAEESSIRLWRKR--LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS 222 (366)
T ss_pred HH-----HHHHHHHHHhccchhhHHHHHHHH--HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 11 1111111222222 3333333331 2457788899999999999999999999987744 333 7889999
Q ss_pred HHcCChhHHHHHHHHhhhcC------CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhh
Q 005990 158 ISAGRASEVQKTLDSLRVKA------TSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAP 231 (666)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 231 (666)
++.|+.+.|..+|+.+.+.. ....-+..+.+.+|...++|..|...|.+.+..++.. + .
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~----------~-----~ 287 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN----------A-----V 287 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCc----------h-----h
Confidence 99999999999998654321 2345577888999999999999999999998888432 2 4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 005990 232 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADE 264 (666)
Q Consensus 232 ~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~ 264 (666)
+.++.|.|+.-.|+..+|++..+.++...|...
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 778889999999999999999999999998654
No 225
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.96 E-value=5.6e-06 Score=77.18 Aligned_cols=101 Identities=10% Similarity=0.068 Sum_probs=64.9
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHH
Q 005990 23 LFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLD 102 (666)
Q Consensus 23 l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 102 (666)
+-.+++.++.+|.|++|+.+|.+.+..+|.|+..+...+.+|+++.+|..|......+..++..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~---------------- 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL---------------- 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH----------------
Confidence 4556777778888888888888888888877777777888888887777776666655433211
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH
Q 005990 103 EALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE 150 (666)
Q Consensus 103 ~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 150 (666)
...+|...+..-..+|...+|.+-|+.++.+.|.+.+
T Consensus 164 -----------Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 164 -----------YVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred -----------HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence 2234444455555555555666566665555555444
No 226
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.92 E-value=0.057 Score=58.95 Aligned_cols=314 Identities=12% Similarity=0.079 Sum_probs=173.8
Q ss_pred ChhHHHHHHHHHH-HcCCHHHHHHHHHHHHhhC--CChhH------HHHHHHHHHcCChhHHHHHHHHhhhcCCC----h
Q 005990 114 NPATMLLKSQILY-RSGEMDACVEFYQKLQKSK--IDSLE------INFVAGLISAGRASEVQKTLDSLRVKATS----S 180 (666)
Q Consensus 114 ~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~--p~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~ 180 (666)
...+.+.+|.+++ ...++++|..++++++... ++-.+ ..++.++.+.+... |...+++.+..... .
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4566777787776 6778888888888876543 22222 45566666666555 77777777664333 2
Q ss_pred HHHHHHH--HHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005990 181 FELAYNT--ACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 181 ~~~~~~l--a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~ 258 (666)
+...+.+ ...++..+++..|++.++......... .+. .-...+.+..+.++...+..+++++..+++..
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--------~d~-~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--------GDP-AVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--------CCH-HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 3233333 223333479999999999998877421 111 11223445556677778888888888887743
Q ss_pred hC------CCC----HhHHHHHHhhhhhccCCC--ChhHHHHHhHHHhhhhhhhh--hh--hH-----------------
Q 005990 259 RN------LAD----ESSFAVAVNNLVALKGPK--DVNDSLKKLDRIKEKDMQNF--QL--AR----------------- 305 (666)
Q Consensus 259 ~~------~~~----~~~~~~~~~~l~~~~~~~--~~~~a~~~l~~~~~~~~~~~--~~--~~----------------- 305 (666)
.. +.. ...+......+..+.... +....++.+.+.+....+.. .. .+
T Consensus 208 ~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~ 287 (608)
T PF10345_consen 208 QARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGT 287 (608)
T ss_pred HHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCc
Confidence 21 111 112222222222333322 55566666666665543221 00 00
Q ss_pred -HhhcCCCHHHHHH-HHHHHHHHHHHcCChHHHHHHHHhcccc----------CCCCc----------------hHHHHH
Q 005990 306 -VLDLRLSPKQREA-IYANRVLLLLHANKMDQARELVAALPDM----------FPDSV----------------MPLLLQ 357 (666)
Q Consensus 306 -~l~~~~~~~q~~~-~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------~p~~~----------------~~~~~~ 357 (666)
..-..++..+... ++.--+...+..+..+.|.+++.++++. .+... ...+..
T Consensus 288 ~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~ 367 (608)
T PF10345_consen 288 PLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQ 367 (608)
T ss_pred eeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHH
Confidence 0001122222222 2333345566777766666666555321 11111 012333
Q ss_pred HHHHHhhCChhHHHHHHHHHHhhC---CC-----hhHHHHHHHHHHHHHcCChhHHHHHHh--------cCcCCCCChhH
Q 005990 358 AAVLVRENKAGKAEELLGQFAEKL---PD-----KSKIILLARAQVAAAANHPFIAAESLA--------KIPDIQHMPAT 421 (666)
Q Consensus 358 a~~~~~~g~~~~A~~~l~~~~~~~---p~-----~~~~~~~~la~~~~~~g~~~~A~~~l~--------~~~~~~~~~~~ 421 (666)
+...+-.+++..|...+..+.... |. .....++..|..+...|+.+.|...|. .+....+..++
T Consensus 368 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El 447 (608)
T PF10345_consen 368 IWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFREL 447 (608)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHH
Confidence 445566899999988888776542 22 123467788888889999999999998 44444444443
Q ss_pred H----HHHHHHHHHcCChhH
Q 005990 422 V----ATLVALKERAGDIDG 437 (666)
Q Consensus 422 ~----~~l~~~~~~~g~~~~ 437 (666)
+ ..++.++...+....
T Consensus 448 ~ila~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 448 YILAALNLAIILQYESSRDD 467 (608)
T ss_pred HHHHHHHHHHHhHhhcccch
Confidence 2 445666666555443
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.91 E-value=0.0035 Score=61.74 Aligned_cols=175 Identities=18% Similarity=0.217 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-------chhhhHHHHHHHHH---hCCHHHHHHHHHh-----cCCChhHH
Q 005990 54 EDAMRCKVVALIKADNIDDALSTIQSSQKF-------TFDFNYLKAYCLYR---QNRLDEALESLKI-----QENNPATM 118 (666)
Q Consensus 54 ~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~a~~~~~---~g~~~~A~~~l~~-----~~~~~~~~ 118 (666)
++....+-.+|....+|+.=+.+.+.+..+ .+.+.+..|.++.+ .|+.++|+.++.. .+.++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 455566666677777777777777766444 23455566666666 6667777766654 12255666
Q ss_pred HHHHHHHHHc---------CCHHHHHHHHHHHHhhCCChhH-HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHH
Q 005990 119 LLKSQILYRS---------GEMDACVEFYQKLQKSKIDSLE-INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTA 188 (666)
Q Consensus 119 ~~la~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 188 (666)
-++|.+|-.. ...++|+..|.++...+|+... +|++.++...|...+....++++. ..++
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~----------~~l~ 290 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIG----------VKLS 290 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHH----------HHHH
Confidence 6666665321 2345556666665555554444 555555554443222221111110 0001
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHh
Q 005990 189 CSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADES 265 (666)
Q Consensus 189 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~ 265 (666)
..+...|..+. ..++ +.+..++.+....|++++|...+++++...|....
T Consensus 291 ~llg~kg~~~~----------------------~~dY-----Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 291 SLLGRKGSLEK----------------------MQDY-----WDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHHHhhccccc----------------------cccH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 11111111000 1121 45566777777888999999999998888776543
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.90 E-value=0.031 Score=55.08 Aligned_cols=432 Identities=12% Similarity=0.039 Sum_probs=225.9
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--chhhhHHHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKF--TFDFNYLKA 92 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~a 92 (666)
-+|+++.++|..+..+-.+|.+++-.+.+++++.-.|--+.+|......-+..++|..-..+|.++... +.++|....
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl 116 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYL 116 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHH
Confidence 578999999999999999999999999999999999988888887777777778888888888887432 223332111
Q ss_pred -HHHHH----hCC----HHHHHHHHHh----cCCChhHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCChhH
Q 005990 93 -YCLYR----QNR----LDEALESLKI----QENNPATMLLKSQILY---------RSGEMDACVEFYQKLQKSKIDSLE 150 (666)
Q Consensus 93 -~~~~~----~g~----~~~A~~~l~~----~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~l~~~p~~~~ 150 (666)
|+--. .|+ +-+|.++.-. .|.....|...+..+. .+.+.+.-...|.+++..--++.+
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 11111 111 2333333322 2344445544444332 223344555677777754333333
Q ss_pred ------------HHHHHHHHHcC----ChhHHHHHHHHhhhc-------CCC-----------hHHHHHHHHHHHHHhc-
Q 005990 151 ------------INFVAGLISAG----RASEVQKTLDSLRVK-------ATS-----------SFELAYNTACSLAEMN- 195 (666)
Q Consensus 151 ------------~~l~~~~~~~g----~~~~A~~~~~~~~~~-------~~~-----------~~~~~~~la~~~~~~g- 195 (666)
+|-+.+---.| -|-.|...++++... +|. ...-|.|....-...|
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 22211111112 133444555444321 111 1112333333222211
Q ss_pred -----CHHHHH-HHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHH
Q 005990 196 -----KYTEAE-QLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAV 269 (666)
Q Consensus 196 -----~~~~A~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~ 269 (666)
-..+-+ -.+++++..-+- ...+|+.....+...++-+.|+....+.+...|.-. +
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y~~~---------------~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~----~ 337 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDYFYY---------------AEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLT----M 337 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHHhhh---------------hHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchh----e
Confidence 112211 224444443321 113677666667777788888888777776666411 1
Q ss_pred HHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCC
Q 005990 270 AVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD 349 (666)
Q Consensus 270 ~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~ 349 (666)
...-+..+..+.+ .....++.+...-....... +.... --..|+++...+++-.-.. .
T Consensus 338 ~lse~yel~nd~e--~v~~~fdk~~q~L~r~ys~~---~s~~~--------------s~~D~N~e~~~Ell~kr~~---k 395 (660)
T COG5107 338 FLSEYYELVNDEE--AVYGCFDKCTQDLKRKYSMG---ESESA--------------SKVDNNFEYSKELLLKRIN---K 395 (660)
T ss_pred eHHHHHhhcccHH--HHhhhHHHHHHHHHHHHhhh---hhhhh--------------ccccCCccccHHHHHHHHh---h
Confidence 1111111111111 11111111110000000000 00000 0001112111111110000 1
Q ss_pred CchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHH-HHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHH
Q 005990 350 SVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ-VAAAANHPFIAAESLAKIPDIQH-MPATVATLVA 427 (666)
Q Consensus 350 ~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~-~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~ 427 (666)
-..++........+..-.+.|..+|-++-+..-. ...++...|. -|...|++.-|..+|+--+...+ ++........
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~-~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIV-GHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC-CcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 1122222223333444466677777776544311 1123333333 35567899999999998877777 5555566667
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCCh
Q 005990 428 LKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI 493 (666)
Q Consensus 428 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 493 (666)
.+...|+-+.|..+|+.++...... +...+|..+...-..-|+...+..+-++.....|..
T Consensus 475 fLi~inde~naraLFetsv~r~~~~-----q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKT-----QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHh-----hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 7788999999999999988776332 444578777788888899999999989998888873
No 229
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.88 E-value=0.0001 Score=71.48 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=93.0
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHH-cCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHH
Q 005990 354 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA-ANHPFIAAESLAKIPDIQH-MPATVATLVALKER 431 (666)
Q Consensus 354 ~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~ 431 (666)
|..+.....+.+..+.|..+|.++....+. ...++...|.+... .++.+.|..+|+.++...+ ++.+|...+..+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRC-TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 344444555555577777777777643332 23366666666555 4455557777777776666 66677777777777
Q ss_pred cCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCChHHHHHHHHhhccCCh
Q 005990 432 AGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDV 508 (666)
Q Consensus 432 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~l~~l~~~~~~~d~ 508 (666)
.|+.+.|..+|++++...+.. .....+|.....+-...|+.+....+++++.+..|+...+..++.-|+..|+
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~----~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ry~~~~~ 155 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKE----KQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSDRYSFLDL 155 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCH----HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCCT-BTTB
T ss_pred hCcHHHHHHHHHHHHHhcCch----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Confidence 777777777777776542111 1133477777888888899999999999999999885555555555544333
No 230
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.84 E-value=0.071 Score=57.46 Aligned_cols=182 Identities=13% Similarity=0.070 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhccc--hhhhHHHHHHHHHhCCHHHHHHHHHhcCC-----ChhHHHHHHHHHH
Q 005990 54 EDAMRCKVVALIKADNIDDALSTIQSSQKFT--FDFNYLKAYCLYRQNRLDEALESLKIQEN-----NPATMLLKSQILY 126 (666)
Q Consensus 54 ~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~a~~~~~~g~~~~A~~~l~~~~~-----~~~~~~~la~~~~ 126 (666)
.+.++.-+..+...|...+|+...-.+.... .......+.-+...+++.--+..++..|. ++....+.|....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~ 426 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLA 426 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHH
Confidence 5667777777888888888888777662211 12222334445556666666666666554 7788889999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCC--hhH---------HHHHHHHHHcCChhHHHHHHHHhhhcCCCh-----HHHHHHHHHH
Q 005990 127 RSGEMDACVEFYQKLQKSKID--SLE---------INFVAGLISAGRASEVQKTLDSLRVKATSS-----FELAYNTACS 190 (666)
Q Consensus 127 ~~g~~~~A~~~~~~~l~~~p~--~~~---------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~ 190 (666)
...++.+|..+..++...-+. ... ..-+.+....|+++.|....+.++..-|.+ ..++..+|.+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 999999999999998664322 111 333445566899999999999888755542 3466788899
Q ss_pred HHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcC
Q 005990 191 LAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLG 244 (666)
Q Consensus 191 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 244 (666)
..-.|++++|..+...+.++.... ++..-...+.+..+.++..+|
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~---------~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQH---------DVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999886531 111222246667788888999
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.83 E-value=0.0015 Score=64.40 Aligned_cols=173 Identities=17% Similarity=0.012 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccc----CCCCchHHHHHHHHHHh---hCChhHHHHHHHHHHhhCCChhHHHHHH
Q 005990 319 IYANRVLLLLHANKMDQARELVAALPDM----FPDSVMPLLLQAAVLVR---ENKAGKAEELLGQFAEKLPDKSKIILLA 391 (666)
Q Consensus 319 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~a~~~~~---~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 391 (666)
+..++...|....+|+.-+++.+.+... .++...+.+..|.++.+ .|+.++|+.++..++........+.+-.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 4466677899999999999999888766 45566778888999988 9999999999999665554444557777
Q ss_pred HHHHHHH---------cCChhHHHHHHhcCcCCCC--ChhHHHHHHHHHHHcCChhHHHHHHHHHH-HHH----HHhccC
Q 005990 392 RAQVAAA---------ANHPFIAAESLAKIPDIQH--MPATVATLVALKERAGDIDGAAAVLDSAI-KWW----LNAMTE 455 (666)
Q Consensus 392 la~~~~~---------~g~~~~A~~~l~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~l~~a~-~~~----~~~~~~ 455 (666)
++.+|-. ....++|+..|.++.+..+ .+++ .++.++...|...+....+++.. .+. ......
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GI--N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGI--NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchH--HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 8877742 2357899999999998887 4444 44556666665444443344333 111 111111
Q ss_pred cchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCCh
Q 005990 456 DNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI 493 (666)
Q Consensus 456 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 493 (666)
.....+.+..++.+..-.|++++|...++++++..|..
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 22223344456677788999999999999999998873
No 232
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.79 E-value=2.4e-05 Score=47.68 Aligned_cols=34 Identities=12% Similarity=0.304 Sum_probs=31.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005990 42 VADQVLSTNPSDEDAMRCKVVALIKADNIDDALS 75 (666)
Q Consensus 42 ~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~ 75 (666)
+|+++|+.+|+++.+|+.+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999963
No 233
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.79 E-value=0.0012 Score=57.36 Aligned_cols=129 Identities=17% Similarity=0.182 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHhhhccc------hhhhHH
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDE---DAMRCKVVALIKADNIDDALSTIQSSQKFT------FDFNYL 90 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~ 90 (666)
....|..+....+.+.. +.....++....++.+. .+-..++..+...|++++|+..++.+.... .-..+.
T Consensus 53 AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 53 ASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 34556666666666655 66667777777776552 334456778899999999999999875332 235568
Q ss_pred HHHHHHHhCCHHHHHHHHHhcCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChh
Q 005990 91 KAYCLYRQNRLDEALESLKIQEN---NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSL 149 (666)
Q Consensus 91 ~a~~~~~~g~~~~A~~~l~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 149 (666)
++.+++.+|.+++|+.+++..-+ ......+.|.++...|+-++|...|++++...++..
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 88999999999999999988544 345578899999999999999999999988765544
No 234
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.76 E-value=0.00025 Score=56.70 Aligned_cols=92 Identities=23% Similarity=0.183 Sum_probs=70.8
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-C----hhHHHHHHHHHH
Q 005990 356 LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-M----PATVATLVALKE 430 (666)
Q Consensus 356 ~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~----~~~~~~l~~~~~ 430 (666)
..+.++...|+.+.|++.|.+++...|.... ++...++.+.-+|+.++|++.+++++++.. . ...+...+.+|.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raS-ayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERAS-AYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchH-hhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 4456667788888888888888888888655 788888888888888888888888877654 1 223456788888
Q ss_pred HcCChhHHHHHHHHHHHH
Q 005990 431 RAGDIDGAAAVLDSAIKW 448 (666)
Q Consensus 431 ~~g~~~~A~~~l~~a~~~ 448 (666)
..|+.+.|..-|+.+.++
T Consensus 127 l~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQL 144 (175)
T ss_pred HhCchHHHHHhHHHHHHh
Confidence 888888888888887665
No 235
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.76 E-value=0.00073 Score=68.02 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCChhH----HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHH
Q 005990 116 ATMLLKSQILYR-SGEMDACVEFYQKLQKSKIDSLE----INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACS 190 (666)
Q Consensus 116 ~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 190 (666)
..++.++..|.+ .|+.-+|+.++..++-..++... ..++.++.+.|...+|--++..++...+.-..-+|.++.+
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i 292 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNI 292 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHH
Confidence 455666666655 79999999999999887666544 8889999999999999888888877666666668999999
Q ss_pred HHHhcCHHHHHHHHHHHHHhhhh
Q 005990 191 LAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 191 ~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
+...++|......|..+.+..+.
T Consensus 293 ~aml~~~N~S~~~ydha~k~~p~ 315 (886)
T KOG4507|consen 293 YAMLGEYNHSVLCYDHALQARPG 315 (886)
T ss_pred HHHHhhhhhhhhhhhhhhccCcc
Confidence 99999999999999988887754
No 236
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0013 Score=58.92 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=89.6
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh--------hCCChhH------------HHHHHHHHHcCChhHHHHHHHHh
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQK--------SKIDSLE------------INFVAGLISAGRASEVQKTLDSL 173 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--------~~p~~~~------------~~l~~~~~~~g~~~~A~~~~~~~ 173 (666)
...+++..|.-+++.|+|.+|...|+.++. ..|.+.+ .|+..++...|+|-++++....+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 457788999999999999999999998863 2455544 78889999999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 174 RVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 174 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
+..+|.+..++|..|.++...=+..+|..-|.+++++.|.
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 9999999999999999999999999999999999999964
No 237
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.70 E-value=0.00068 Score=65.72 Aligned_cols=129 Identities=10% Similarity=0.092 Sum_probs=102.1
Q ss_pred HHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHh-hCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcC
Q 005990 322 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR-ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN 400 (666)
Q Consensus 322 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g 400 (666)
.+.....+.+..+.|+.+|.++.+..+-...++...|.+-+. .++.+.|..+|+..++..|.+.. +++..+..++..|
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~-~~~~Y~~~l~~~~ 84 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD-FWLEYLDFLIKLN 84 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHhC
Confidence 334555566668999999999986666677888888888666 55666699999999999999755 7888888999999
Q ss_pred ChhHHHHHHhcCcCCCCCh----hHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 005990 401 HPFIAAESLAKIPDIQHMP----ATVATLVALKERAGDIDGAAAVLDSAIKWWLN 451 (666)
Q Consensus 401 ~~~~A~~~l~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~ 451 (666)
+.+.|..+|++++..-+.. .+|......-...|+.+....+.+++.+.++.
T Consensus 85 d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 85 DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp -HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999876622 47888899999999999999999988887643
No 238
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.66 E-value=0.0014 Score=59.61 Aligned_cols=263 Identities=15% Similarity=0.101 Sum_probs=144.3
Q ss_pred cCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhh
Q 005990 195 NKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNL 274 (666)
Q Consensus 195 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l 274 (666)
.+.++|+..|++++++..+.- +-.+ .+.-++..+++.+|++++-+..|.+++..-.+- +.. |+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKg------eWGF-----KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA-----VTr-Ny 103 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKG------EWGF-----KALKQMIKINFRLGNYKEMMERYKQLLTYIKSA-----VTR-NY 103 (440)
T ss_pred cCHHHHHHHHHHHHhcccccc------hhHH-----HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-----Hhc-cc
Confidence 478899999999999874321 1111 477788999999999999999999987431100 000 00
Q ss_pred hhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHH
Q 005990 275 VALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPL 354 (666)
Q Consensus 275 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 354 (666)
+.+.++.++.-- . +. .+... .+.-|+--+..++.+.... --...-
T Consensus 104 -----------SEKsIN~IlDyi----------S---tS-------~~m~L---LQ~FYeTTL~ALkdAKNeR-LWFKTN 148 (440)
T KOG1464|consen 104 -----------SEKSINSILDYI----------S---TS-------KNMDL---LQEFYETTLDALKDAKNER-LWFKTN 148 (440)
T ss_pred -----------cHHHHHHHHHHH----------h---hh-------hhhHH---HHHHHHHHHHHHHhhhcce-eeeecc
Confidence 001111110000 0 00 00000 0111222222333221110 000111
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHhhCCC-----------hhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCC---CChh
Q 005990 355 LLQAAVLVRENKAGKAEELLGQFAEKLPD-----------KSKIILLARAQVAAAANHPFIAAESLAKIPDIQ---HMPA 420 (666)
Q Consensus 355 ~~~a~~~~~~g~~~~A~~~l~~~~~~~p~-----------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~---~~~~ 420 (666)
..++.+++..++|.+-.+++.++-..+.. ....++..-.++|..+.+-.+-..+|++++.+. |.|-
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 34566666777776666666655443211 123456666788888888888888888887654 3555
Q ss_pred HHH----HHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHH--HHHHHHHHhCCC----hhhHHHHHHHHHHhc
Q 005990 421 TVA----TLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIM--QEAASFKLRHGR----EEDASHLFEELVKTH 490 (666)
Q Consensus 421 ~~~----~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~----~~~A~~~~~~~l~~~ 490 (666)
+.. .-|.++.+.|++++|-.-|=+|+..+..+.. +....++ .-++..+++.|- -.+|.- .+.+
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs--pRRttCLKYLVLANMLmkS~iNPFDsQEAKP-----yKNd 301 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS--PRRTTCLKYLVLANMLMKSGINPFDSQEAKP-----YKND 301 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCC--cchhHHHHHHHHHHHHHHcCCCCCcccccCC-----CCCC
Confidence 443 2356778889999998888888776644333 2222222 245666666542 223321 2334
Q ss_pred CChHHHHHHHHhhccCChhhHHHHHh
Q 005990 491 GSIEALVGLVTTSAHVDVDKAESYEK 516 (666)
Q Consensus 491 p~~~~l~~l~~~~~~~d~~~a~~~~~ 516 (666)
|...+..++|.+|...|...-+..++
T Consensus 302 PEIlAMTnlv~aYQ~NdI~eFE~Il~ 327 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQNNDIIEFERILK 327 (440)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 54556678888888888877666544
No 239
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0013 Score=58.93 Aligned_cols=120 Identities=21% Similarity=0.194 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhc
Q 005990 230 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL 309 (666)
Q Consensus 230 ~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~ 309 (666)
.++..+-|.-++..|+|.||...|..++. ...++.......+ .-+-.++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~-----------~l~~L~lkEkP~e--~eW~eLd------------------ 226 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAII-----------CLRNLQLKEKPGE--PEWLELD------------------ 226 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHH-----------HHHHHHhccCCCC--hHHHHHH------------------
Confidence 36778899999999999999999998862 1222222222111 1111111
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCCh
Q 005990 310 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK 384 (666)
Q Consensus 310 ~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~ 384 (666)
.+...++.|.+.+++..|+|-++++...+++..+|++..+++.+|.++...=+..+|...|..+++.+|.-
T Consensus 227 ----k~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 227 ----KMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred ----HhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 11223678889999999999999999999999999999999999999888888999999999999998873
No 240
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.61 E-value=0.12 Score=53.81 Aligned_cols=186 Identities=15% Similarity=0.066 Sum_probs=106.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch-----------hhhHHHHHHHHHhCCHHH
Q 005990 35 EFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF-----------DFNYLKAYCLYRQNRLDE 103 (666)
Q Consensus 35 ~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~~a~~~~~~g~~~~ 103 (666)
-.++|+++ ++-+| ++..|..++...+..-.++-|...|-+...... .-....|.+-..-|++++
T Consensus 678 gledA~qf----iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 678 GLEDAIQF----IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred chHHHHHH----HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 34555554 34455 678999999887777778888877777632211 011234445555688888
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH----HHHHHHHHHcCChhHHHHHHHHhhhcCCC
Q 005990 104 ALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE----INFVAGLISAGRASEVQKTLDSLRVKATS 179 (666)
Q Consensus 104 A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 179 (666)
|.+++-.... .-+...++...|+|-...++++..-....|... .+++..+.....+++|.++|.....
T Consensus 753 aek~yld~dr----rDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---- 824 (1189)
T KOG2041|consen 753 AEKLYLDADR----RDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---- 824 (1189)
T ss_pred hhhhhhccch----hhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 8887755332 123334556677776655555432111111111 6677777777777888777765421
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 005990 180 SFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDI 256 (666)
Q Consensus 180 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~ 256 (666)
.-+++.+++...+|++-+.+-... |++ ....-.+|..+...|.-++|.+.|-+.
T Consensus 825 ----~e~~~ecly~le~f~~LE~la~~L--------------pe~-----s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 825 ----TENQIECLYRLELFGELEVLARTL--------------PED-----SELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred ----hHhHHHHHHHHHhhhhHHHHHHhc--------------Ccc-----cchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 123455666666665544332222 111 135556777777778888888777554
No 241
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.61 E-value=0.092 Score=52.22 Aligned_cols=131 Identities=12% Similarity=0.141 Sum_probs=104.7
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc---chhhhHHHHHHH
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKF---TFDFNYLKAYCL 95 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~a~~~ 95 (666)
.+...-..+......||.-.|-+-+..+|...|.+++.....+++...+|.|+.|...+..+... .....-.+-..+
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSL 367 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence 45555566677788999999999999999999999999999999999999999999999887432 223333455667
Q ss_pred HHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChh
Q 005990 96 YRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSL 149 (666)
Q Consensus 96 ~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 149 (666)
..+|++++|..+.+. ..+++.+....|...-.+|-++++.-.+++++.++|...
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred hchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 789999999887665 234677777777777888999999999999998876543
No 242
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.60 E-value=0.16 Score=54.90 Aligned_cols=177 Identities=12% Similarity=0.080 Sum_probs=121.3
Q ss_pred CcHHHHH-HHHHHHhhhccHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhhh----ccchhhhHHH
Q 005990 18 PPIEDLF-TSLNRHIERSEFEQAVKVADQVLSTNPSD-EDAMRCKVVALIKADNIDDALSTIQSSQ----KFTFDFNYLK 91 (666)
Q Consensus 18 ~~~~~l~-~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~a~~~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~ 91 (666)
.....+. ..+..+...|...+|+...-.+ .+|.- .+.+-..+.-++..++..--+...+..+ ...|.+.+..
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~ 421 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQ 421 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHH
Confidence 3444444 4445557788889998876443 23322 2233334555777777766665555552 2256778888
Q ss_pred HHHHHHhCCHHHHHHHHHhc------CC-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-------H
Q 005990 92 AYCLYRQNRLDEALESLKIQ------EN-------NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-------I 151 (666)
Q Consensus 92 a~~~~~~g~~~~A~~~l~~~------~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~ 151 (666)
+..++...++.+|..++.+. +. .....-+.|++....|++++|+++.+.++..-|.+.. .
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 89999999999999998872 21 2345668899999999999999999999987665543 6
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhc----CCChHH--HHHHHHHHHHHhcC
Q 005990 152 NFVAGLISAGRASEVQKTLDSLRVK----ATSSFE--LAYNTACSLAEMNK 196 (666)
Q Consensus 152 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~--~~~~la~~~~~~g~ 196 (666)
.++.+..-.|++++|..+...+.+. +....+ +.+..+.++..+|+
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 6777777799999999988877654 222222 33455777888883
No 243
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00066 Score=60.66 Aligned_cols=95 Identities=13% Similarity=0.060 Sum_probs=86.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCH
Q 005990 120 LKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKY 197 (666)
Q Consensus 120 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 197 (666)
-.|..|+...+|..|+..|.++|..+|.... .|-+.++++..+++.+.....++++..|+..-..|.+|.++.....|
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 3455667778899999999999999998765 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhh
Q 005990 198 TEAEQLLLTARRIGQET 214 (666)
Q Consensus 198 ~~A~~~l~~a~~~~~~~ 214 (666)
++|+..|++|..+....
T Consensus 95 ~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQ 111 (284)
T ss_pred cHHHHHHHHHHHHHhcC
Confidence 99999999998887544
No 244
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.59 E-value=5.5e-05 Score=46.10 Aligned_cols=33 Identities=18% Similarity=0.028 Sum_probs=30.4
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHH
Q 005990 170 LDSLRVKATSSFELAYNTACSLAEMNKYTEAEQ 202 (666)
Q Consensus 170 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 202 (666)
|+++++.+|+++++|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
No 245
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.025 Score=51.14 Aligned_cols=197 Identities=15% Similarity=0.118 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--chhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCH
Q 005990 54 EDAMRCKVVALIKADNIDDALSTIQSSQKF--TFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEM 131 (666)
Q Consensus 54 ~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~ 131 (666)
...+..-+++|....+|++|...+.++..- +...+|.-| ..+...|.+......+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAA-----------------------KayEqaamLake~~kl 87 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAA-----------------------KAYEQAAMLAKELSKL 87 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHH-----------------------HHHHHHHHHHHHHHHh
Confidence 445555667777788888888877777321 111222111 1122223333334444
Q ss_pred HHHHHHHHHHHhh-----CCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcC------CChHHHHHHHHHHHHHhcCHH
Q 005990 132 DACVEFYQKLQKS-----KIDSLE--INFVAGLISAGRASEVQKTLDSLRVKA------TSSFELAYNTACSLAEMNKYT 198 (666)
Q Consensus 132 ~~A~~~~~~~l~~-----~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~ 198 (666)
.|+..+|+++... .|+... +.-+.-.....+.++|+.+|++.+..- ...++.+-..+.+++....|+
T Consensus 88 sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 88 SEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 4555555554432 122111 233333445566777787777765422 123567777889999999999
Q ss_pred HHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhcc
Q 005990 199 EAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALK 278 (666)
Q Consensus 199 ~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 278 (666)
+|-..|.+-..+.... +.. +.....++....+|.-..+|..|..+|+..-.+..-..+--.....+++...
T Consensus 168 Eaa~a~lKe~~~~~~~--------~~y-~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKC--------DAY-NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HHHHHHHHhhhHHHHH--------hhc-ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 9988888765554221 000 1222345555566777789999999999866543322222223344444443
Q ss_pred CCCC
Q 005990 279 GPKD 282 (666)
Q Consensus 279 ~~~~ 282 (666)
...+
T Consensus 239 d~gD 242 (308)
T KOG1585|consen 239 DEGD 242 (308)
T ss_pred ccCC
Confidence 4334
No 246
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.58 E-value=0.13 Score=53.18 Aligned_cols=169 Identities=12% Similarity=0.021 Sum_probs=117.2
Q ss_pred HHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChh
Q 005990 324 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPF 403 (666)
Q Consensus 324 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~ 403 (666)
...-...|+++...-+++.++---......|+..+......|+.+-|-..+....+..-.....+.+.-+.+....|+++
T Consensus 304 Ldf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~ 383 (577)
T KOG1258|consen 304 LDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFD 383 (577)
T ss_pred hhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHH
Confidence 44456678888887777777654445557788888877888999999888888877654434447777788888899999
Q ss_pred HHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HhCCChhhHHH
Q 005990 404 IAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFK-LRHGREEDASH 481 (666)
Q Consensus 404 ~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~ 481 (666)
.|..+|+++.+..| ...+...-+.+..+.|+.+.+.. +..++................+...+++. .-.++.+.|..
T Consensus 384 ~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~ 462 (577)
T KOG1258|consen 384 DAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY-KNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARI 462 (577)
T ss_pred HHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999987666 44444555667778888887774 33333322222212222333444555554 45789999999
Q ss_pred HHHHHHHhcCCh
Q 005990 482 LFEELVKTHGSI 493 (666)
Q Consensus 482 ~~~~~l~~~p~~ 493 (666)
++.+++...|+.
T Consensus 463 ~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 463 ILLEANDILPDC 474 (577)
T ss_pred HHHHhhhcCCcc
Confidence 999999999984
No 247
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.58 E-value=0.00015 Score=47.57 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVV 62 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~ 62 (666)
..++..+..+...|++++|+.+|+++++.+|+|++++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888999999999999999999999999999999998875
No 248
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.55 E-value=0.0016 Score=56.04 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcC
Q 005990 36 FEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNI---DDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQE 112 (666)
Q Consensus 36 ~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~ 112 (666)
|+.|.+.++.....+|.|+++++..|.+|+.+.++ .++..+|+.+.. ++++|+.+ .|
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAis-----------------K~eeAL~I---~P 66 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAIS-----------------KFEEALKI---NP 66 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH-----------------HHHHHHHH----T
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHH-----------------HHHHHHhc---CC
Confidence 78899999999999999999999999999988766 456677776621 23333333 67
Q ss_pred CChhHHHHHHHHHHHcC
Q 005990 113 NNPATMLLKSQILYRSG 129 (666)
Q Consensus 113 ~~~~~~~~la~~~~~~g 129 (666)
+...++..+|.+|...+
T Consensus 67 ~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 67 NKHDALWCLGNAYTSLA 83 (186)
T ss_dssp T-HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 77788888888876654
No 249
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.52 E-value=0.00096 Score=57.38 Aligned_cols=87 Identities=14% Similarity=0.078 Sum_probs=59.6
Q ss_pred hhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhH
Q 005990 163 ASEVQKTLDSLRVKATSSFELAYNTACSLAEMNK----------YTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPI 232 (666)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (666)
|+.|.+.++.....+|.+.+.+++-|.++..+.+ +++|+.-|+.|+.++|+ ...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~---------------~hdA 71 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN---------------KHDA 71 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT----------------HHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc---------------hHHH
Confidence 5667777777777788888888888887776644 35566677777777754 3357
Q ss_pred HHHHHHHHHHcC-----------ChHHHHHHHHHHHhhCCCCH
Q 005990 233 AVQLAYVQQLLG-----------NTQEAFGAYTDIIKRNLADE 264 (666)
Q Consensus 233 ~~~la~~~~~~g-----------~~~eA~~~~~~~l~~~~~~~ 264 (666)
++.+|.+|..++ .|++|..+|+++...+|++.
T Consensus 72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 778887777654 37888889999999999885
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0098 Score=55.58 Aligned_cols=155 Identities=21% Similarity=0.180 Sum_probs=94.9
Q ss_pred hhhHHHHHHHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHH---HHHHHH
Q 005990 86 DFNYLKAYCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEIN---FVAGLI 158 (666)
Q Consensus 86 ~~~~~~a~~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~---l~~~~~ 158 (666)
...+..+.-+...|++.+|...|.. .+++..+...+|.+|...|+.+.|..++..+-....+..... ....+.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 3445555666667777777766655 455667777777777777777777777665422111111111 112222
Q ss_pred HcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHH
Q 005990 159 SAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAY 238 (666)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 238 (666)
+.....+.. .+++....+|++.++.+.+|..+...|++++|.+.|-..+..+... .++ .+.-.+-.
T Consensus 215 qaa~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-------~d~------~~Rk~lle 280 (304)
T COG3118 215 QAAATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-------EDG------EARKTLLE 280 (304)
T ss_pred HHhcCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-------cCc------HHHHHHHH
Confidence 222222222 2344456789999999999999999999999999998888876432 111 35566666
Q ss_pred HHHHcCChHHHHHHHH
Q 005990 239 VQQLLGNTQEAFGAYT 254 (666)
Q Consensus 239 ~~~~~g~~~eA~~~~~ 254 (666)
++...|.-+.+...|+
T Consensus 281 ~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 281 LFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHhcCCCCHHHHHHH
Confidence 6666665444444444
No 251
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.0045 Score=53.95 Aligned_cols=121 Identities=19% Similarity=0.131 Sum_probs=93.7
Q ss_pred HHcCChHHHHHHHHhccccCCCCc---hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCCh--hHHHHHHHHHHHHHcCCh
Q 005990 328 LHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK--SKIILLARAQVAAAANHP 402 (666)
Q Consensus 328 ~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~--~~~~~~~la~~~~~~g~~ 402 (666)
...+.. +....++++...++.+. ...+.+|..+...+++++|+..|+.++....+. ..-+.+.++.+...+|.+
T Consensus 64 ~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~ 142 (207)
T COG2976 64 VQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKA 142 (207)
T ss_pred HhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhH
Confidence 334444 55556666666676554 345677888999999999999999988654442 223667889999999999
Q ss_pred hHHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 005990 403 FIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWW 449 (666)
Q Consensus 403 ~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~ 449 (666)
++|+..+....+....+-+....|.++...|+..+|+..|+++++..
T Consensus 143 D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 143 DAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 99999999876655455566788999999999999999999998864
No 252
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=0.15 Score=60.96 Aligned_cols=306 Identities=14% Similarity=0.122 Sum_probs=170.8
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-ch---hhhHHHHHHHHHh
Q 005990 23 LFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKF-TF---DFNYLKAYCLYRQ 98 (666)
Q Consensus 23 l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~---~~~~~~a~~~~~~ 98 (666)
+..+...+...|+|..|..+|+++++.+|+....+.....+.+..|.+...+...+-.... +. ........+-+++
T Consensus 1452 l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1452 LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhh
Confidence 5567777888999999999999999999998888888888999999999998877766322 22 2223333444888
Q ss_pred CCHHHHHHHHHhcCC-ChhHHHHHHHHHHHcCCHHH-----HHHHHHHHHhh-----C-CChhH--HHHHHHHHHcCChh
Q 005990 99 NRLDEALESLKIQEN-NPATMLLKSQILYRSGEMDA-----CVEFYQKLQKS-----K-IDSLE--INFVAGLISAGRAS 164 (666)
Q Consensus 99 g~~~~A~~~l~~~~~-~~~~~~~la~~~~~~g~~~~-----A~~~~~~~l~~-----~-p~~~~--~~l~~~~~~~g~~~ 164 (666)
++++.-...+. ..+ .......+|.+.++..+-+. .++.-+..+-. . ..... +.+..-+...-+.+
T Consensus 1532 ~qwD~~e~~l~-~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1532 SQWDLLESYLS-DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred cchhhhhhhhh-cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 99888877766 222 11222226777766544322 22222222100 0 00100 11111111111222
Q ss_pred HHHHHHHHhhhcC--CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHH
Q 005990 165 EVQKTLDSLRVKA--TSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQL 242 (666)
Q Consensus 165 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 242 (666)
.-++.+.+....+ ..+.+-|.+....-....+..+-+-.+++++-.... ..+....++.+|++.|.+...
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~--------~~~~~~~~ge~wLqsAriaR~ 1682 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRM--------RSNLKSRLGECWLQSARIARL 1682 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhc--------cccccchhHHHHHHHHHHHHh
Confidence 2222222221111 111223333333222222344444445554433211 113336678899999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHH
Q 005990 243 LGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYAN 322 (666)
Q Consensus 243 ~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~ 322 (666)
.|+++-|...+-.+.+..+.. +...
T Consensus 1683 aG~~q~A~nall~A~e~r~~~-------------------------------------------------------i~~E 1707 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESRLPE-------------------------------------------------------IVLE 1707 (2382)
T ss_pred cccHHHHHHHHHhhhhcccch-------------------------------------------------------HHHH
Confidence 999999988877766544321 1123
Q ss_pred HHHHHHHcCChHHHHHHHHhcccc-CCC----------Cch------HHHHHHHHHHhhCCh--hHHHHHHHHHHhhCCC
Q 005990 323 RVLLLLHANKMDQARELVAALPDM-FPD----------SVM------PLLLQAAVLVRENKA--GKAEELLGQFAEKLPD 383 (666)
Q Consensus 323 ~a~~~~~~~~~~~A~~~~~~~~~~-~p~----------~~~------~~~~~a~~~~~~g~~--~~A~~~l~~~~~~~p~ 383 (666)
.|.+++..|+-..|+..+++.+.. .|+ ... +.+..+.-....+++ ..-+++|..+.+..|.
T Consensus 1708 ~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1708 RAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 377888899999999988887743 333 111 122222223334443 3457788888888885
Q ss_pred hhHHHHHHHH
Q 005990 384 KSKIILLARA 393 (666)
Q Consensus 384 ~~~~~~~~la 393 (666)
... .++.+|
T Consensus 1788 we~-~hy~l~ 1796 (2382)
T KOG0890|consen 1788 WED-KHYHLG 1796 (2382)
T ss_pred ccC-ceeeHH
Confidence 433 444555
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.017 Score=54.61 Aligned_cols=205 Identities=14% Similarity=0.039 Sum_probs=136.3
Q ss_pred HHHHHHhcCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHhhhcc------chhhhHHHHHHHHHhCCHHHHHH----HHHh
Q 005990 42 VADQVLSTNPSDEDAM-RCKVVALIKADNIDDALSTIQSSQKF------TFDFNYLKAYCLYRQNRLDEALE----SLKI 110 (666)
Q Consensus 42 ~~~~~l~~~p~~~~a~-~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~a~~~~~~g~~~~A~~----~l~~ 110 (666)
...+....+|....+. +.+|..++..+.--+-...++++... ..+-.-..+.+++..|++.+|.. +++.
T Consensus 53 ~a~kL~ssDP~~Vmart~a~gl~~iaa~s~v~~ak~~dqav~dav~y~~arEk~h~~aai~~~~g~~h~a~~~wdklL~d 132 (491)
T KOG2610|consen 53 SAEKLSSSDPEAVMARTFALGLVLIAAASNVEFAKKMDQAVIDAVKYGNAREKRHAKAAILWGRGKHHEAAIEWDKLLDD 132 (491)
T ss_pred HHHHHhcCChHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHhhhHHhhhhhHHHhhccccccHHHHHHHHHHHh
Confidence 3444455566544333 23444444444333333333433110 01222244556667777777654 4555
Q ss_pred cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCChhH-----HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHH
Q 005990 111 QENNPATMLLKSQILYRSGEMDACVEFYQKLQKS-KIDSLE-----INFVAGLISAGRASEVQKTLDSLRVKATSSFELA 184 (666)
Q Consensus 111 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 184 (666)
.|.+..++..--.+++-+|+...-...+++++-. +++-+- -.++-.+...|-+++|.+.-++++++++.+.-+.
T Consensus 133 ~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~ 212 (491)
T KOG2610|consen 133 YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWAS 212 (491)
T ss_pred CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHH
Confidence 7888888888888899999999999999998865 555422 3445567789999999999999999999888889
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005990 185 YNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDII 257 (666)
Q Consensus 185 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l 257 (666)
..++.++...|++.++.+++.+-...-..+ . -....-|-.-|.++..-+.|+.|+++|+.-+
T Consensus 213 Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s---------~--mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 213 HAKAHVLEMNGRHKEGKEFMYKTEDDWRQS---------W--MLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHHHHhcchhhhHHHHHHhcccchhhh---------h--HHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 999999999999999999987754433210 0 0111234556777888899999999998654
No 254
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.49 E-value=0.097 Score=53.12 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=57.4
Q ss_pred CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 005990 177 ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDI 256 (666)
Q Consensus 177 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~ 256 (666)
.......+...+.+....|+++.|...+.++.......- .....+.+..+.++...|+..+|+..++..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~-----------~~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE-----------SLLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc-----------CCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445677899999999999999999999999888663210 001247788899999999999999999988
Q ss_pred Hh
Q 005990 257 IK 258 (666)
Q Consensus 257 l~ 258 (666)
+.
T Consensus 211 ~~ 212 (352)
T PF02259_consen 211 LK 212 (352)
T ss_pred HH
Confidence 87
No 255
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.41 E-value=0.16 Score=50.35 Aligned_cols=120 Identities=15% Similarity=0.098 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhccc---h-----hhhHHHHHHHHHhCCHHHHHHHH---Hh-cCCChhHHHHHHH
Q 005990 56 AMRCKVVALIKADNIDDALSTIQSSQKFT---F-----DFNYLKAYCLYRQNRLDEALESL---KI-QENNPATMLLKSQ 123 (666)
Q Consensus 56 a~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~-----~~~~~~a~~~~~~g~~~~A~~~l---~~-~~~~~~~~~~la~ 123 (666)
.+...|.++..++++.+|..+|.++.... + ++...+....|-+++++.-...+ ++ .|..+.+....|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 45667889999999999999999983321 1 22233334445566665544433 33 6678888889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhh----CCChhH-------------HHHHHHHHHcCChhHHHHHHHHhhh
Q 005990 124 ILYRSGEMDACVEFYQKLQKS----KIDSLE-------------INFVAGLISAGRASEVQKTLDSLRV 175 (666)
Q Consensus 124 ~~~~~g~~~~A~~~~~~~l~~----~p~~~~-------------~~l~~~~~~~g~~~~A~~~~~~~~~ 175 (666)
+.|+.++|.+|++.+....+. .+.-.+ .-.+.+++..|.+.++..+++++..
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 999999999999988776543 111111 3457788889999999999988765
No 256
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.29 E-value=0.52 Score=56.64 Aligned_cols=146 Identities=12% Similarity=0.077 Sum_probs=101.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhh----hc--cchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHH
Q 005990 59 CKVVALIKADNIDDALSTIQSS----QK--FTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMD 132 (666)
Q Consensus 59 ~~~~~~~~~g~~~~A~~~~~~~----~~--~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~ 132 (666)
.++.+-++.+.|.+|+.++++- .+ ......+.+-.+|...++++.-.-+....- ...............|++.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-a~~sl~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-ADPSLYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-cCccHHHHHHHHHhhccHH
Confidence 6788889999999999999983 11 122455566678899998887666654211 1112233344456689999
Q ss_pred HHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHH-HHHHhcCHHHHHHHHH
Q 005990 133 ACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTAC-SLAEMNKYTEAEQLLL 205 (666)
Q Consensus 133 ~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~l~ 205 (666)
.|..+|++++..+|+... ..........|.++..+...+-.....++..+-+++++. +....++|+.-..++.
T Consensus 1467 da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1467 DAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999999888654 555556666788888888877776666666767776665 4466777776666554
No 257
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.28 E-value=0.5 Score=53.16 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=66.8
Q ss_pred HHHhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHhhhcc--chhhhHHHHHHH
Q 005990 28 NRHIERSEFEQAVKVADQVLSTNPSD---EDAMRCKVVALIKA----D---NIDDALSTIQSSQKF--TFDFNYLKAYCL 95 (666)
Q Consensus 28 ~~~~~~~~~~~A~~~~~~~l~~~p~~---~~a~~~~~~~~~~~----g---~~~~A~~~~~~~~~~--~~~~~~~~a~~~ 95 (666)
..+.....|+.|+..|.++-...|+- .++.+..|..++.+ | .+++|+..|++.... .|--++.+|.+|
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVY 562 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHH
Confidence 34566778999999999999999875 67788888776643 2 477777777776322 234555777777
Q ss_pred HHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHH
Q 005990 96 YRQNRLDEALESLKI----QENNPATMLLKSQILYR 127 (666)
Q Consensus 96 ~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~ 127 (666)
.++|+++|-++.+.- .|.++.+-.+.-.+.++
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (932)
T PRK13184 563 QRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYR 598 (932)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 777777776665543 45555544444444444
No 258
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.27 E-value=0.00071 Score=41.39 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 005990 231 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLAD 263 (666)
Q Consensus 231 ~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~ 263 (666)
.+++.+|.++..+|++++|+..|++++.++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 488999999999999999999999999999864
No 259
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.27 E-value=0.00058 Score=41.80 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 005990 231 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLAD 263 (666)
Q Consensus 231 ~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~ 263 (666)
.+|+.+|.+|..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 489999999999999999999999999999863
No 260
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.25 E-value=0.013 Score=57.99 Aligned_cols=151 Identities=11% Similarity=0.096 Sum_probs=114.4
Q ss_pred HHHhccccCCCCchHHHHHHHHHHhhC------------ChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHH
Q 005990 339 LVAALPDMFPDSVMPLLLQAAVLVREN------------KAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAA 406 (666)
Q Consensus 339 ~~~~~~~~~p~~~~~~~~~a~~~~~~g------------~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~ 406 (666)
-+++.+..+|.+..+|+.++......- -.+.-+.+|+++++.+|++.. +++.+..+..+..+.++..
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~-L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSER-LLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCCHHHHH
Confidence 355667778999988887765443321 135668899999999998665 7777777888888889989
Q ss_pred HHHhcCcCCCC-ChhHHHHHHHHHHH---cCChhHHHHHHHHHHHHHHHhccC-----------cchHHHHHHHHHHHHH
Q 005990 407 ESLAKIPDIQH-MPATVATLVALKER---AGDIDGAAAVLDSAIKWWLNAMTE-----------DNKLSVIMQEAASFKL 471 (666)
Q Consensus 407 ~~l~~~~~~~~-~~~~~~~l~~~~~~---~g~~~~A~~~l~~a~~~~~~~~~~-----------~~~~~~~~~~l~~~~~ 471 (666)
..+++++..+| ++.+|......... .-.++.....|.+++......... ......++..+..++.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999888 88888655544433 235778899999988866543322 2345567778889999
Q ss_pred hCCChhhHHHHHHHHHHhc
Q 005990 472 RHGREEDASHLFEELVKTH 490 (666)
Q Consensus 472 ~~g~~~~A~~~~~~~l~~~ 490 (666)
..|..+.|+.+++-+++.+
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFN 184 (321)
T ss_pred HCCchHHHHHHHHHHHHHH
Confidence 9999999999999999987
No 261
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.25 E-value=0.16 Score=51.60 Aligned_cols=140 Identities=15% Similarity=0.000 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCC----CchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHH--H
Q 005990 315 QREAIYANRVLLLLHANKMDQARELVAALPDMFPD----SVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI--I 388 (666)
Q Consensus 315 q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~--~ 388 (666)
.....+...+.+....|+++.|...+..+....+. .+.+.+..+.++...|+..+|+..++..+......... .
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 33445566788889999999999999888765421 45677888899999999999999998888732221100 0
Q ss_pred HHHHHHHHHHcCChhHHHHHHhcCc----C-CCC--ChhHHHHHHHHHHHc------CChhHHHHHHHHHHHHHHHhccC
Q 005990 389 LLARAQVAAAANHPFIAAESLAKIP----D-IQH--MPATVATLVALKERA------GDIDGAAAVLDSAIKWWLNAMTE 455 (666)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~l~~~~----~-~~~--~~~~~~~l~~~~~~~------g~~~~A~~~l~~a~~~~~~~~~~ 455 (666)
...+.... .. .+.... . ... ...++..+|...... +..+++...|..++...+....
T Consensus 224 ~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k- 293 (352)
T PF02259_consen 224 NAELKSGL-----LE----SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK- 293 (352)
T ss_pred HHHHhhcc-----cc----ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH-
Confidence 00000000 00 000000 0 000 223456667766666 7888888999998887654332
Q ss_pred cchHHHHHHHHHHHH
Q 005990 456 DNKLSVIMQEAASFK 470 (666)
Q Consensus 456 ~~~~~~~~~~l~~~~ 470 (666)
.|...|.++
T Consensus 294 ------~~~~~a~~~ 302 (352)
T PF02259_consen 294 ------AWHSWALFN 302 (352)
T ss_pred ------HHHHHHHHH
Confidence 455555554
No 262
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.25 E-value=0.00082 Score=44.00 Aligned_cols=42 Identities=29% Similarity=0.214 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHH
Q 005990 352 MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ 394 (666)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~ 394 (666)
.+++.+|.+|...|++++|++.|+++++.+|++.. ++..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~-a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPE-AWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH-HHHHhhh
Confidence 34566666777777777777777777777776544 5555543
No 263
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.24 E-value=0.015 Score=49.52 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=70.3
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchh---hhHHHHHHH
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFD---FNYLKAYCL 95 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~a~~~ 95 (666)
-+..|+..+......++.+++..++..+--+.|+.++.-..-|..++..|+|.+|+.+|+.+....+. ..-.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999998554432 334667777
Q ss_pred HHhCC
Q 005990 96 YRQNR 100 (666)
Q Consensus 96 ~~~g~ 100 (666)
+.+|+
T Consensus 89 ~~~~D 93 (160)
T PF09613_consen 89 YALGD 93 (160)
T ss_pred HHcCC
Confidence 77665
No 264
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.18 E-value=0.00096 Score=40.79 Aligned_cols=33 Identities=15% Similarity=0.371 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCh
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDS 148 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 148 (666)
.+++.+|.+++..|++++|++.|++++..+|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 578899999999999999999999999998874
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.17 E-value=0.043 Score=55.21 Aligned_cols=169 Identities=21% Similarity=0.190 Sum_probs=100.9
Q ss_pred hhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCC----Ch-------hhHhhhhhh
Q 005990 163 ASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNF----AE-------DDIEIELAP 231 (666)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~----~~-------~~~~~~~~~ 231 (666)
...-++.-.++++.+|+..+++..+|.-. ..-..+|+.+|+++++.....+..+.. .+ .+. .-+..
T Consensus 184 p~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt-~~~~y 260 (539)
T PF04184_consen 184 PQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDT-NVLVY 260 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcccc-chhhh
Confidence 33444444555555565555554444321 123456666666666665444432210 00 010 11335
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCC
Q 005990 232 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL 311 (666)
Q Consensus 232 ~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~ 311 (666)
+...+|.+..++|+.+||++.|..+++..|....
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~---------------------------------------------- 294 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN---------------------------------------------- 294 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch----------------------------------------------
Confidence 7788999999999999999999999987774310
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHhcccc-CCCCchHHHHHHHHHHh-hCC---------------hhHHHHHH
Q 005990 312 SPKQREAIYANRVLLLLHANKMDQARELVAALPDM-FPDSVMPLLLQAAVLVR-ENK---------------AGKAEELL 374 (666)
Q Consensus 312 ~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~a~~~~~-~g~---------------~~~A~~~l 374 (666)
..+..|+...++..+.|.++..++.+.-+. .|.+....+..|.+..+ .++ -..|++.+
T Consensus 295 -----l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi 369 (539)
T PF04184_consen 295 -----LNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAI 369 (539)
T ss_pred -----hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHH
Confidence 013456688889999999999988886543 35555555555544333 111 12356777
Q ss_pred HHHHhhCCChh
Q 005990 375 GQFAEKLPDKS 385 (666)
Q Consensus 375 ~~~~~~~p~~~ 385 (666)
.++++.+|..+
T Consensus 370 ~RAvefNPHVp 380 (539)
T PF04184_consen 370 HRAVEFNPHVP 380 (539)
T ss_pred HHHHHhCCCCc
Confidence 77777777643
No 266
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.16 E-value=0.0011 Score=40.57 Aligned_cols=33 Identities=15% Similarity=0.364 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCh
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDS 148 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 148 (666)
.+|+.+|.++..+|++++|+..|+++++.+|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999998874
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.14 E-value=0.28 Score=47.60 Aligned_cols=220 Identities=15% Similarity=0.167 Sum_probs=133.2
Q ss_pred HhhhccHHHHHHHHHHHHhc----CCCC----HHHHHHHHHHHHHcC-CHHHHHHHHHhhhcc----c------------
Q 005990 30 HIERSEFEQAVKVADQVLST----NPSD----EDAMRCKVVALIKAD-NIDDALSTIQSSQKF----T------------ 84 (666)
Q Consensus 30 ~~~~~~~~~A~~~~~~~l~~----~p~~----~~a~~~~~~~~~~~g-~~~~A~~~~~~~~~~----~------------ 84 (666)
...+|+++.|..++.++-.. +|+. ...++..|..++..+ ++++|...++++... .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999887554 3433 456777888889999 999999999988322 1
Q ss_pred -hhhhHHHHHHHHHhCCHHH---HHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--C-hhH--H
Q 005990 85 -FDFNYLKAYCLYRQNRLDE---ALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKI--D-SLE--I 151 (666)
Q Consensus 85 -~~~~~~~a~~~~~~g~~~~---A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~-~~~--~ 151 (666)
..+...++.+|...+.++. |..+++. .++.+.++++.-.++.+.++.+++.+.+.+++..-+ + +.+ .
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 1233467778888777554 4444433 466778888888888889999999999999987533 2 222 2
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhc--CCChHHHHHH---HHHHHHHhc--C------HHHHHHHHHHHHHhhhhhccCC
Q 005990 152 NFVAGLISAGRASEVQKTLDSLRVK--ATSSFELAYN---TACSLAEMN--K------YTEAEQLLLTARRIGQETLTDD 218 (666)
Q Consensus 152 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~---la~~~~~~g--~------~~~A~~~l~~a~~~~~~~~~~~ 218 (666)
+....+.. .....|...+..++.. .+.... +.. +..++...+ + .+....++........ .
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~-----~ 235 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLG-----K 235 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhc-----C
Confidence 22222232 3345666666666542 222211 222 222222222 1 2223333332222221 1
Q ss_pred CCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005990 219 NFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDII 257 (666)
Q Consensus 219 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l 257 (666)
.++++.. .-+..+..+.|...+..++|++|..+|+-++
T Consensus 236 ~ls~~~~-~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 236 QLSAEAA-SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CCCHHHH-HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2233333 2233455677889999999999999999766
No 268
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.11 E-value=0.5 Score=50.85 Aligned_cols=173 Identities=13% Similarity=0.082 Sum_probs=116.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHhhhc-------c-chhhhHHHHHHHHHhC--
Q 005990 35 EFEQAVKVADQVLSTNPSDEDAMRCKVVALIKA-----DNIDDALSTIQSSQK-------F-TFDFNYLKAYCLYRQN-- 99 (666)
Q Consensus 35 ~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~-----g~~~~A~~~~~~~~~-------~-~~~~~~~~a~~~~~~g-- 99 (666)
+...|..+++.+-.. ++..+...+|.||..- .+.+.|+.+|+.+.. . .+...+.++.+|++..
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888887766 5788999999998865 589999999998844 1 2445667888887743
Q ss_pred ---CHHHHHHHHHhc--CCChhHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCChhHHHHHHHHHH----cCChhHHH
Q 005990 100 ---RLDEALESLKIQ--ENNPATMLLKSQILYRSG---EMDACVEFYQKLQKSKIDSLEINFVAGLIS----AGRASEVQ 167 (666)
Q Consensus 100 ---~~~~A~~~l~~~--~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~----~g~~~~A~ 167 (666)
+++.|+.++.+. -.++.+.+.+|.++..-. ++..|..+|..+....-....+.++.+|.. .-+...|.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 567788888773 347788888888876655 467888888887665443333666666554 33566777
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhh
Q 005990 168 KTLDSLRVKATSSFELAYNTACSLAEM-NKYTEAEQLLLTARRIG 211 (666)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~l~~a~~~~ 211 (666)
..+.++.... .+.+.+.++.++..- +.++.+...+....++.
T Consensus 385 ~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 385 AYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhh
Confidence 7777776665 344444444443332 66666666665555554
No 269
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0019 Score=57.81 Aligned_cols=89 Identities=10% Similarity=-0.022 Sum_probs=79.8
Q ss_pred HHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHH
Q 005990 156 GLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQ 235 (666)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (666)
.|+....|+.|+.+|.+++..+|..+..+.|.|.+|++..+|+.+...-.+++++.++ ++...+.
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N---------------~vk~h~f 83 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN---------------LVKAHYF 83 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH---------------HHHHHHH
Confidence 3445567899999999999999999999999999999999999999999999999954 3468999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhh
Q 005990 236 LAYVQQLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 236 la~~~~~~g~~~eA~~~~~~~l~~ 259 (666)
+|....+...|++|+..+.++..+
T Consensus 84 lg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 84 LGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHhhccccHHHHHHHHHHHH
Confidence 999999999999999999999654
No 270
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.54 Score=49.30 Aligned_cols=141 Identities=17% Similarity=0.106 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHH
Q 005990 54 EDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDA 133 (666)
Q Consensus 54 ~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~ 133 (666)
.++++.+|.-+..+-.|++|.++|.... ..-..+.|||+++.|++-..+....|++...+-.+|+++.+.|.-++
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~-----~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~q 870 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCG-----DTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQ 870 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHH
Confidence 5678888888888888888888888762 23356789999999999999988999999999999999999999999
Q ss_pred HHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 005990 134 CVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTA 207 (666)
Q Consensus 134 A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 207 (666)
|++.|-+- ..|.. -...+...+++.+|.++-++.. -|.-..+.-..+.-++..++.-+|++..+++
T Consensus 871 AV~a~Lr~--s~pka----Av~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 871 AVEAYLRR--SLPKA----AVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHhc--cCcHH----HHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 99988653 12221 1233445566777777654431 1333333334455566677777777777665
No 271
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.03 E-value=0.022 Score=47.48 Aligned_cols=109 Identities=16% Similarity=0.096 Sum_probs=86.4
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch---hhhHHHHHHH
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF---DFNYLKAYCL 95 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~a~~~ 95 (666)
-+..++..+......++++++..+++.+--+.|+.++.-..-|..++..|+|.+|+.+|+......+ ...-.+++|+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 3567888888888899999999999999889999999999999999999999999999999965543 3345778888
Q ss_pred HHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005990 96 YRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQ 142 (666)
Q Consensus 96 ~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 142 (666)
+-+|+ ..|+..|.-....+...+|+.+.+.+.
T Consensus 89 ~al~D---------------p~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 89 NAKGD---------------AEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HhcCC---------------hHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 88775 345666666666666666666666554
No 272
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.01 E-value=0.098 Score=51.88 Aligned_cols=159 Identities=11% Similarity=0.051 Sum_probs=115.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHH
Q 005990 103 EALESLKIQENNPATMLLKSQILYRSGE------------MDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQK 168 (666)
Q Consensus 103 ~A~~~l~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~ 168 (666)
+..+.+...|.+..+|..++...-..-. .+.-+.+|+++++.+|++.. ..+........+.++...
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3344556678888888777766544432 45678899999999998777 555566667778888889
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhhhhhccCC---CCChhhHhhhhhhHHHHHHHHHHH
Q 005990 169 TLDSLRVKATSSFELAYNTACSLAE---MNKYTEAEQLLLTARRIGQETLTDD---NFAEDDIEIELAPIAVQLAYVQQL 242 (666)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~l~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~la~~~~~ 242 (666)
.+++++..+|.++.+|...-..... .-.+......|.+++..-....... .....+.+..+..++..+.....+
T Consensus 87 ~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~ 166 (321)
T PF08424_consen 87 KWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ 166 (321)
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888765544333 3357788888888887654332211 112334455677888889999999
Q ss_pred cCChHHHHHHHHHHHhhCC
Q 005990 243 LGNTQEAFGAYTDIIKRNL 261 (666)
Q Consensus 243 ~g~~~eA~~~~~~~l~~~~ 261 (666)
.|..+.|+.+++.+++.+-
T Consensus 167 aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 167 AGYTERAVALWQALLEFNF 185 (321)
T ss_pred CCchHHHHHHHHHHHHHHc
Confidence 9999999999999998754
No 273
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.92 E-value=0.17 Score=51.70 Aligned_cols=100 Identities=19% Similarity=0.108 Sum_probs=84.6
Q ss_pred HHHHHHHHh-hCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHc
Q 005990 355 LLQAAVLVR-ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA 432 (666)
Q Consensus 355 ~~~a~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~ 432 (666)
+.+|.+|.+ .|+...|+.++..++...|.........+|++.+..|-...|-.++.+++.+.. .|-..+.+|.+|..+
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l 689 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL 689 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH
Confidence 344455554 899999999999999988875544678899999999999999999999988877 787889999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhcc
Q 005990 433 GDIDGAAAVLDSAIKWWLNAMT 454 (666)
Q Consensus 433 g~~~~A~~~l~~a~~~~~~~~~ 454 (666)
.+.+.|++.|+.|+...++.+.
T Consensus 690 ~~i~~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 690 KNISGALEAFRQALKLTTKCPE 711 (886)
T ss_pred hhhHHHHHHHHHHHhcCCCChh
Confidence 9999999999999988765543
No 274
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.91 E-value=0.68 Score=48.04 Aligned_cols=147 Identities=13% Similarity=0.073 Sum_probs=103.5
Q ss_pred HHHcCChHHHHHHHHhcccc-----CCCCc---hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHH
Q 005990 327 LLHANKMDQARELVAALPDM-----FPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA 398 (666)
Q Consensus 327 ~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~ 398 (666)
+...-...+.+-.++..++. .|.+. ..|......-...|+++...-.++.++--....+. .|+..+.....
T Consensus 265 ~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~e-fWiky~~~m~~ 343 (577)
T KOG1258|consen 265 YQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDE-FWIKYARWMES 343 (577)
T ss_pred HHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHH-HHHHHHHHHHH
Confidence 33344445555566666554 22222 33444445566799999999999999876666544 88888888888
Q ss_pred cCChhHHHHHHhcCcCCCC--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCCh
Q 005990 399 ANHPFIAAESLAKIPDIQH--MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGRE 476 (666)
Q Consensus 399 ~g~~~~A~~~l~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 476 (666)
.|+.+-|-.++.++..+.. .|.+...-+.+....|++..|..+|++..+..|+.. .+-..-+....+.|+.
T Consensus 344 ~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v-------~~~l~~~~~e~r~~~~ 416 (577)
T KOG1258|consen 344 SGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLV-------EVVLRKINWERRKGNL 416 (577)
T ss_pred cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchh-------hhHHHHHhHHHHhcch
Confidence 8999999999999887665 777777778888889999999999999877653221 1222334555677888
Q ss_pred hhHHH
Q 005990 477 EDASH 481 (666)
Q Consensus 477 ~~A~~ 481 (666)
+.+..
T Consensus 417 ~~~~~ 421 (577)
T KOG1258|consen 417 EDANY 421 (577)
T ss_pred hhhhH
Confidence 88874
No 275
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.90 E-value=0.0017 Score=64.49 Aligned_cols=103 Identities=15% Similarity=0.215 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCC
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNR 100 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~ 100 (666)
..+-.+++.++..++|+.|+..|.++++++|+++..+-..+.++++.++|..|+.-+.++++.+
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d---------------- 68 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD---------------- 68 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC----------------
Confidence 3455788889999999999999999999999999899999999999999999999988886653
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH
Q 005990 101 LDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE 150 (666)
Q Consensus 101 ~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 150 (666)
|....+++..|..+...+.+.+|+..|+......|++..
T Consensus 69 -----------P~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 69 -----------PTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred -----------chhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHH
Confidence 345567777788888888888888888888888887765
No 276
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.84 E-value=0.027 Score=48.70 Aligned_cols=92 Identities=17% Similarity=0.125 Sum_probs=68.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCh---------hH---------------HHHHHHHHHcCChhHHHHHHHHhhhcC
Q 005990 122 SQILYRSGEMDACVEFYQKLQKSKIDS---------LE---------------INFVAGLISAGRASEVQKTLDSLRVKA 177 (666)
Q Consensus 122 a~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~---------------~~l~~~~~~~g~~~~A~~~~~~~~~~~ 177 (666)
|......|+.+.++..+++++.....+ .. ..++..+...|++++|+..+++++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 444455667777777777776632110 00 345666778999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 178 TSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 178 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
|.+-.++..+..+|...|+..+|+..|++....-.+
T Consensus 93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 93 PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999877654
No 277
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.76 E-value=0.05 Score=54.52 Aligned_cols=173 Identities=14% Similarity=0.074 Sum_probs=113.8
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhC---CHHHHHHHH
Q 005990 32 ERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQN---RLDEALESL 108 (666)
Q Consensus 32 ~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g---~~~~A~~~l 108 (666)
...|.+.-+ .+|..+|-+.+++..++.++.++|+++.|.++++++.-. ++.+..-.-.. +......-+
T Consensus 22 ~~~Dp~~l~----~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~-----~e~~~~~~F~~~~~~~~~g~~rL 92 (360)
T PF04910_consen 22 QSHDPNALI----NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA-----FERAFHPSFSPFRSNLTSGNCRL 92 (360)
T ss_pred HccCHHHHH----HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHHHHHHHhhhhhcccccCcccc
Confidence 334554333 346789999999999999999999999999999998211 11110000000 000000000
Q ss_pred H-hcCCCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-hhH--HHHHH-HHHHcCChhHHHHHHHHhhhcCCC-
Q 005990 109 K-IQENNP---ATMLLKSQILYRSGEMDACVEFYQKLQKSKID-SLE--INFVA-GLISAGRASEVQKTLDSLRVKATS- 179 (666)
Q Consensus 109 ~-~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~--~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~- 179 (666)
. ..++|. .+.+...+.+.+.|-+..|+++.+-++.++|+ |+- ..... .....++++--+..++........
T Consensus 93 ~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~ 172 (360)
T PF04910_consen 93 DYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN 172 (360)
T ss_pred CCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh
Confidence 0 012233 35567788889999999999999999999998 444 22222 234477887777777765542111
Q ss_pred ----hHHHHHHHHHHHHHhcCH---------------HHHHHHHHHHHHhhhh
Q 005990 180 ----SFELAYNTACSLAEMNKY---------------TEAEQLLLTARRIGQE 213 (666)
Q Consensus 180 ----~~~~~~~la~~~~~~g~~---------------~~A~~~l~~a~~~~~~ 213 (666)
-+...|..+.+++..++- +.|...+.+|+...|.
T Consensus 173 ~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 173 WLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 235778888999999988 8999999999999864
No 278
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.74 E-value=0.0083 Score=51.90 Aligned_cols=60 Identities=23% Similarity=0.350 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSS 80 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~ 80 (666)
..+...+..+...|++++|+..+++++..+|-+..++..+..+|...|++.+|+..|++.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 344555666788999999999999999999999999999999999999999999999998
No 279
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.72 E-value=0.0014 Score=62.01 Aligned_cols=121 Identities=22% Similarity=0.133 Sum_probs=94.3
Q ss_pred HHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChh
Q 005990 324 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPF 403 (666)
Q Consensus 324 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~ 403 (666)
+.-.+..|.++.|++.+..++..+|....++..++.++.+.++...|++.+..+++.+|+... -+-..+.....+|+++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~-~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK-GYKFRGYAERLLGNWE 199 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc-ccchhhHHHHHhhchH
Confidence 455677888999999999999999999999999999999999999999999999999998655 5555677778889999
Q ss_pred HHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 005990 404 IAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSA 445 (666)
Q Consensus 404 ~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a 445 (666)
+|...|..+.+++.++..-..+-.+.-..+..++-...++++
T Consensus 200 ~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHH
Confidence 999999988887776665555555554444444444444443
No 280
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.71 E-value=0.099 Score=52.45 Aligned_cols=97 Identities=15% Similarity=-0.019 Sum_probs=62.4
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHhhCCC-hhHHHHHHHHHHHHHcCChhHHHHHHhcCcCC------CCChhHHHHHHH
Q 005990 355 LLQAAVLVRENKAGKAEELLGQFAEKLPD-KSKIILLARAQVAAAANHPFIAAESLAKIPDI------QHMPATVATLVA 427 (666)
Q Consensus 355 ~~~a~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~------~~~~~~~~~l~~ 427 (666)
+.....+.+.|-+..|.++.+-++..+|. ++.++.+.+=...++.++++=-+.+++..... ..-|.+.+..+-
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aL 186 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIAL 186 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHH
Confidence 34445556666666677666666666666 55545555555556666666666665554331 113556666777
Q ss_pred HHHHcCCh---------------hHHHHHHHHHHHHHHH
Q 005990 428 LKERAGDI---------------DGAAAVLDSAIKWWLN 451 (666)
Q Consensus 428 ~~~~~g~~---------------~~A~~~l~~a~~~~~~ 451 (666)
.+...++. +.|...+.+|+..+|.
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 77777777 8999999999998864
No 281
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.65 E-value=0.0036 Score=38.17 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005990 231 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA 262 (666)
Q Consensus 231 ~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~ 262 (666)
.+++.+|.+|..+|++++|+..|+++++.+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 48899999999999999999999999998873
No 282
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.64 E-value=0.38 Score=44.32 Aligned_cols=73 Identities=12% Similarity=0.067 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 005990 185 YNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRN 260 (666)
Q Consensus 185 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~ 260 (666)
..+|.+|+..|+|..-.+.+.+....|...-++++.. .-..+..+|..-..+|..+.+...-..+|++++...
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~k---KGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK 221 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQK---KGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIK 221 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhh---ccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh
Confidence 4588899999999999999888888886533322111 012344566666677777888777778888877543
No 283
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0088 Score=56.44 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH------HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHH
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE------INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTAC 189 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 189 (666)
.-+---|.-|++..+|..|+..|.+.|+..-.+.+ .|.+++....|+|..|+.-...++..+|.+..+++.-|.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34456688899999999999999999986444333 788889999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhh
Q 005990 190 SLAEMNKYTEAEQLLLTARRIG 211 (666)
Q Consensus 190 ~~~~~g~~~~A~~~l~~a~~~~ 211 (666)
|++.+..+.+|....+..+.+.
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999888876665
No 284
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.58 E-value=0.27 Score=42.16 Aligned_cols=123 Identities=11% Similarity=0.099 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhhhccc--h-----hhhHHH
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSD--EDAMRCKVVALIKADNIDDALSTIQSSQKFT--F-----DFNYLK 91 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~-----~~~~~~ 91 (666)
..-|..+..+.+.+..++|+..|..+-+..-.. .-+....+.++.+.|+...|+..|..+.... | -..+.-
T Consensus 59 gd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 59 GDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 455677777788889999999999877665544 4566778889999999999999999984332 2 244566
Q ss_pred HHHHHHhCCHHHHHHHHHhc-----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005990 92 AYCLYRQNRLDEALESLKIQ-----ENNPATMLLKSQILYRSGEMDACVEFYQKLQK 143 (666)
Q Consensus 92 a~~~~~~g~~~~A~~~l~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 143 (666)
++.+...|.|++-...++.. |-...+...||...++.|++..|...|.++..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 78889999999988887762 22456778899999999999999999999876
No 285
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.53 E-value=0.22 Score=51.59 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=25.0
Q ss_pred HHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 005990 28 NRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSS 80 (666)
Q Consensus 28 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~ 80 (666)
..++..|.+.+|....--.+-. + -|..++.-.+..=+++-|...|.++
T Consensus 564 ~q~Ieag~f~ea~~iaclgVv~--~---DW~~LA~~ALeAL~f~~ARkAY~rV 611 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGVTD--T---DWRELAMEALEALDFETARKAYIRV 611 (1081)
T ss_pred hhhhhccchhhhhcccccceec--c---hHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3456777777776654222211 2 2444454444444566666666555
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.50 E-value=0.0061 Score=37.71 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 183 LAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 183 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
++.++|.+|...|+|++|+.+|++++.+..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4788999999999999999999998877643
No 287
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.49 E-value=0.0074 Score=36.74 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhh
Q 005990 182 ELAYNTACSLAEMNKYTEAEQLLLTARRIGQ 212 (666)
Q Consensus 182 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 212 (666)
++++.+|.+|...|++++|+.+|++++++++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5799999999999999999999999999985
No 288
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.46 E-value=1.6 Score=49.39 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=71.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-----HHHHHHHHH----cC---ChhHHHHHHHHhhhcCCChHHHHHHH
Q 005990 120 LKSQILYRSGEMDACVEFYQKLQKSKIDSLE-----INFVAGLIS----AG---RASEVQKTLDSLRVKATSSFELAYNT 187 (666)
Q Consensus 120 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~l~~~~~~----~g---~~~~A~~~~~~~~~~~~~~~~~~~~l 187 (666)
..-.++.....|+.|+..|+++....|...+ ...|..+.. .| .+++|+..|+.+. ..+..+--+...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhH
Confidence 3446667778899999999999888877554 444444433 33 4778888888754 345566678888
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhhhh
Q 005990 188 ACSLAEMNKYTEAEQLLLTARRIGQET 214 (666)
Q Consensus 188 a~~~~~~g~~~~A~~~l~~a~~~~~~~ 214 (666)
|.+|.++|+|++-+++|.-|++..+..
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQH 585 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998764
No 289
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.43 E-value=0.12 Score=53.32 Aligned_cols=160 Identities=19% Similarity=0.248 Sum_probs=100.0
Q ss_pred HHHHHhhhccHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHH
Q 005990 26 SLNRHIERSEFEQAVKVAD--QVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDE 103 (666)
Q Consensus 26 ~~~~~~~~~~~~~A~~~~~--~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 103 (666)
+-....-++++++++.... +++..-| .+-....+..+.+.|..+.|+.+... ++..|++| .++|+++.
T Consensus 267 ~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D-----~~~rFeLA---l~lg~L~~ 336 (443)
T PF04053_consen 267 EFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD-----PDHRFELA---LQLGNLDI 336 (443)
T ss_dssp HHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS------HHHHHHHH---HHCT-HHH
T ss_pred HHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC-----hHHHhHHH---HhcCCHHH
Confidence 3445567899999887775 3333333 34466677778889999999987554 45555554 67899999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHH
Q 005990 104 ALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFEL 183 (666)
Q Consensus 104 A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 183 (666)
|.++..... ++..|..+|...+..|+++-|.++|+++- +. ..|..+|...|+.+.-..+.+.+..... ...
T Consensus 337 A~~~a~~~~-~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~-~~L~lLy~~~g~~~~L~kl~~~a~~~~~--~n~ 407 (443)
T PF04053_consen 337 ALEIAKELD-DPEKWKQLGDEALRQGNIELAEECYQKAK-----DF-SGLLLLYSSTGDREKLSKLAKIAEERGD--INI 407 (443)
T ss_dssp HHHHCCCCS-THHHHHHHHHHHHHTTBHHHHHHHHHHCT------H-HHHHHHHHHCT-HHHHHHHHHHHHHTT---HHH
T ss_pred HHHHHHhcC-cHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----Cc-cccHHHHHHhCCHHHHHHHHHHHHHccC--HHH
Confidence 999987654 67899999999999999999999998852 11 3455567778876655555444433221 111
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Q 005990 184 AYNTACSLAEMNKYTEAEQLLLTA 207 (666)
Q Consensus 184 ~~~la~~~~~~g~~~~A~~~l~~a 207 (666)
.-.+++..|+.++.+++|.++
T Consensus 408 ---af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 408 ---AFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ---HHHHHHHHT-HHHHHHHHHHT
T ss_pred ---HHHHHHHcCCHHHHHHHHHHc
Confidence 123455668887777777654
No 290
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.40 E-value=0.0038 Score=62.09 Aligned_cols=102 Identities=17% Similarity=0.098 Sum_probs=92.1
Q ss_pred HHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCCh
Q 005990 323 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHP 402 (666)
Q Consensus 323 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~ 402 (666)
.+.-.+..+.|+.|+.++.++++.+|+....+-.++.++.+.+++..|+..+.++++.+|.... +++..|..++..+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K-~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIK-AYVRRGTAVMALGEF 88 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhh-eeeeccHHHHhHHHH
Confidence 3666788899999999999999999999999999999999999999999999999999999766 888899999999999
Q ss_pred hHHHHHHhcCcCCCC-ChhHHHHH
Q 005990 403 FIAAESLAKIPDIQH-MPATVATL 425 (666)
Q Consensus 403 ~~A~~~l~~~~~~~~-~~~~~~~l 425 (666)
.+|...|+....+.| ++.+...+
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHH
Confidence 999999999999999 66655443
No 291
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.39 E-value=0.0026 Score=60.29 Aligned_cols=94 Identities=11% Similarity=0.053 Sum_probs=84.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcC
Q 005990 119 LLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNK 196 (666)
Q Consensus 119 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 196 (666)
...|.-.+..|.++.|++.|..+|..+|.... ...+.+++.+++...|+.-+..++.++|++..-+-..+.....+|+
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 34455567789999999999999999998776 7778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 005990 197 YTEAEQLLLTARRIGQ 212 (666)
Q Consensus 197 ~~~A~~~l~~a~~~~~ 212 (666)
|++|...|..+.+++-
T Consensus 198 ~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDY 213 (377)
T ss_pred hHHHHHHHHHHHhccc
Confidence 9999999999999884
No 292
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.34 E-value=2.2 Score=46.68 Aligned_cols=117 Identities=14% Similarity=0.038 Sum_probs=64.6
Q ss_pred HHHcCChHHHHHHHHhccccCCCCc----hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCCh
Q 005990 327 LLHANKMDQARELVAALPDMFPDSV----MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHP 402 (666)
Q Consensus 327 ~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~ 402 (666)
.+...+.+.|...+..+.....-+. .+...+|.-....+...+|...+........+.. ..-....+.+..+++
T Consensus 251 Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~--~~e~r~r~Al~~~dw 328 (644)
T PRK11619 251 SVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTS--LLERRVRMALGTGDR 328 (644)
T ss_pred HHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcH--HHHHHHHHHHHccCH
Confidence 3455566777777776544332221 1122222222222225667777666543332211 333344455677888
Q ss_pred hHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 005990 403 FIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSA 445 (666)
Q Consensus 403 ~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a 445 (666)
+.+...+..+..... .+...+-+|..+...|+.++|..+|+++
T Consensus 329 ~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 329 RGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777643222 4445566777777788888888888776
No 293
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.32 E-value=0.0071 Score=36.48 Aligned_cols=32 Identities=28% Similarity=0.552 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCh
Q 005990 117 TMLLKSQILYRSGEMDACVEFYQKLQKSKIDS 148 (666)
Q Consensus 117 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 148 (666)
+++.+|.++...|++++|+..|++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57888999999999999999999999888864
No 294
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.29 E-value=0.066 Score=42.45 Aligned_cols=104 Identities=13% Similarity=0.223 Sum_probs=62.8
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcC---CC---------CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHH
Q 005990 23 LFTSLNRHIERSEFEQAVKVADQVLSTN---PS---------DEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYL 90 (666)
Q Consensus 23 l~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~---------~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 90 (666)
.+..+...+..|-|++|...|.++.+.. |. |.-++..++.++..+|+|++++..-+.+...
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y------- 84 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY------- 84 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-------
Confidence 4667778889999999999999998763 32 2445667888999999999998877766210
Q ss_pred HHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005990 91 KAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQ 142 (666)
Q Consensus 91 ~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 142 (666)
+-+.|.+.+..-- -...+.+..|..+...|+.++|+..|+.+-
T Consensus 85 ----FNRRGEL~qdeGk-----lWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 85 ----FNRRGELHQDEGK-----LWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp ----HHHH--TTSTHHH-----HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ----Hhhccccccccch-----hHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 0111111000000 022344566666777777777777777653
No 295
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.28 E-value=1 Score=44.95 Aligned_cols=210 Identities=13% Similarity=0.096 Sum_probs=142.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHh----------
Q 005990 41 KVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKI---------- 110 (666)
Q Consensus 41 ~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~---------- 110 (666)
-++++++...|-.++.|+-...-++..++-+.|+.......+..|.+.+-++.||--.++-++...++++
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys 368 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYS 368 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHh
Confidence 3577888888888999999999999999999999999999888888888888777665554443333322
Q ss_pred ---------cCCCh----h-----------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH---HHHHHHHHHcCCh
Q 005990 111 ---------QENNP----A-----------TMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE---INFVAGLISAGRA 163 (666)
Q Consensus 111 ---------~~~~~----~-----------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~l~~~~~~~g~~ 163 (666)
..++. . ++..+-..-.+..-.+.|..+|-++-+..-...+ .+--.-+...|++
T Consensus 369 ~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~ 448 (660)
T COG5107 369 MGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDR 448 (660)
T ss_pred hhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCc
Confidence 00011 1 1111112223333466777777776543312222 2222224458889
Q ss_pred hHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHc
Q 005990 164 SEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLL 243 (666)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 243 (666)
.-|-.+|+--+...|++....+..-..++..++-+.|..+|+.++..-.. .++..+|-.+...-..-
T Consensus 449 ~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~-------------~q~k~iy~kmi~YEs~~ 515 (660)
T COG5107 449 ATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEK-------------TQLKRIYDKMIEYESMV 515 (660)
T ss_pred chHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH-------------hhhhHHHHHHHHHHHhh
Confidence 99999999888888988866667777788899999999999988876532 12335666666666777
Q ss_pred CChHHHHHHHHHHHhhCCCC
Q 005990 244 GNTQEAFGAYTDIIKRNLAD 263 (666)
Q Consensus 244 g~~~eA~~~~~~~l~~~~~~ 263 (666)
|+...+..+=++.....|..
T Consensus 516 G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 516 GSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred cchHHHHhHHHHHHHHcCcH
Confidence 88888887777777776644
No 296
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.26 E-value=0.0087 Score=36.08 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 005990 232 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLAD 263 (666)
Q Consensus 232 ~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~ 263 (666)
+++.+|.++...|++++|+..|++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 67899999999999999999999999998853
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.26 E-value=0.23 Score=42.48 Aligned_cols=70 Identities=19% Similarity=0.099 Sum_probs=29.9
Q ss_pred hhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcC
Q 005990 363 RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAG 433 (666)
Q Consensus 363 ~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g 433 (666)
..++.+++..+|..+--..|.... +-..-+.+++..|++.+|+.+|+.+.+-.+ .|..-..++.++...|
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e-~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPE-LDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 344444444444444444444322 444444444444444444444444433333 3333333333333333
No 298
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.23 E-value=1.4 Score=43.33 Aligned_cols=179 Identities=8% Similarity=0.014 Sum_probs=124.9
Q ss_pred HHHHcCCHHHHHHHHHhhhcc-chhhhHHHHHHHHH----hCCHHHHHHHHHhcC--CChhHHHHHHHHHHH----cCCH
Q 005990 63 ALIKADNIDDALSTIQSSQKF-TFDFNYLKAYCLYR----QNRLDEALESLKIQE--NNPATMLLKSQILYR----SGEM 131 (666)
Q Consensus 63 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~a~~~~~----~g~~~~A~~~l~~~~--~~~~~~~~la~~~~~----~g~~ 131 (666)
.....+.+..|+..+..+... .....+.++.+|.. ..+..+|..++.... .++...+.+|.+|.. ..++
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred cccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCH
Confidence 344567788888888887543 23456666666655 345778888887633 367788889988876 4489
Q ss_pred HHHHHHHHHHHhhCCChh---HHHHHHHHHHcC-------ChhHHHHHHHHhhhcCCChHHHHHHHHHHHHH----hcCH
Q 005990 132 DACVEFYQKLQKSKIDSL---EINFVAGLISAG-------RASEVQKTLDSLRVKATSSFELAYNTACSLAE----MNKY 197 (666)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~---~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~ 197 (666)
.+|..+|+++........ ...++..|..-. +...|...|.++.... +..+.+++|.+|.. ..++
T Consensus 130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCH
Confidence 999999999987654432 366666655431 2236778887776554 67788999988765 3489
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcC---------------ChHHHHHHHHHHHhhCC
Q 005990 198 TEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLG---------------NTQEAFGAYTDIIKRNL 261 (666)
Q Consensus 198 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------------~~~eA~~~~~~~l~~~~ 261 (666)
.+|..+|.++.+... ....+.++ ++...| +...|..++..+.....
T Consensus 208 ~~A~~wy~~Aa~~g~-----------------~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 208 KKAFRWYKKAAEQGD-----------------GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHHCCC-----------------HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 999999999988873 14777788 666666 66677777777665444
No 299
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.036 Score=52.49 Aligned_cols=107 Identities=17% Similarity=0.092 Sum_probs=86.7
Q ss_pred hhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHh
Q 005990 228 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL 307 (666)
Q Consensus 228 ~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l 307 (666)
+++.-+-.-|.-|+...+|..|+..|.+.++..-.|..+.
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dln---------------------------------------- 118 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLN---------------------------------------- 118 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHH----------------------------------------
Confidence 3556677778899999999999999999998776664221
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCC
Q 005990 308 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD 383 (666)
Q Consensus 308 ~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~ 383 (666)
..++.|++.+.+..|+|..|+.-+..++...|.+.-+++.-|.+++....+.+|+..++..+..+-+
T Consensus 119 ---------avLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 119 ---------AVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred ---------HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 1245677888888999999999999999999999999988899999999999999988887665433
No 300
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.18 E-value=1.3 Score=47.77 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=107.2
Q ss_pred HHHHHHHHHhcC--CChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHh-------hCCChhH-HHHHHHHHHcC----
Q 005990 101 LDEALESLKIQE--NNPATMLLKSQILYRS-----GEMDACVEFYQKLQK-------SKIDSLE-INFVAGLISAG---- 161 (666)
Q Consensus 101 ~~~A~~~l~~~~--~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~-------~~p~~~~-~~l~~~~~~~g---- 161 (666)
..+|...++... .+....+.+|.+|+.- .+.+.|+.+|+.+.. .. .... ..++.+|....
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~-~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG-LPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc-CCccccHHHHHHhcCCCCcc
Confidence 456777777643 3778888888887664 589999999999876 22 1111 77888888743
Q ss_pred -ChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHH
Q 005990 162 -RASEVQKTLDSLRVKATSSFELAYNTACSLAEMN---KYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLA 237 (666)
Q Consensus 162 -~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 237 (666)
+.+.|...|.++... .++++.+.+|.++..-. ++..|.++|..|...+.. .+.+.++
T Consensus 307 ~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-----------------~A~~~la 367 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-----------------LAIYRLA 367 (552)
T ss_pred ccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-----------------HHHHHHH
Confidence 567799999887655 35678899999988766 678999999999887732 5888888
Q ss_pred HHHHHc----CChHHHHHHHHHHHhhCC
Q 005990 238 YVQQLL----GNTQEAFGAYTDIIKRNL 261 (666)
Q Consensus 238 ~~~~~~----g~~~eA~~~~~~~l~~~~ 261 (666)
.+|..- -+...|..+|.++-..+.
T Consensus 368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 368 LCYELGLGVERNLELAFAYYKKAAEKGN 395 (552)
T ss_pred HHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence 888753 378999999999988773
No 301
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.16 E-value=0.0097 Score=36.79 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005990 232 IAVQLAYVQQLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 232 ~~~~la~~~~~~g~~~eA~~~~~~~l~~ 259 (666)
++..||.+|..+|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999996643
No 302
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.12 E-value=0.31 Score=41.77 Aligned_cols=129 Identities=14% Similarity=0.108 Sum_probs=86.1
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHhhCCC-hhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCCChhHH-----HHHHHHH
Q 005990 356 LQAAVLVRENKAGKAEELLGQFAEKLPD-KSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATV-----ATLVALK 429 (666)
Q Consensus 356 ~~a~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~-----~~l~~~~ 429 (666)
..+.-+...++.++|+.-|..+-...-. .+.-+.+..+.+....|+...|+..|..+-...+.|.+. ..-+.++
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH
Confidence 3344456678888888888876654432 344466667778888888888888888877666655544 2335566
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhc
Q 005990 430 ERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 490 (666)
Q Consensus 430 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 490 (666)
...|-|+......+... ...++-..+.-..||...++.|++..|...|.++....
T Consensus 143 vD~gsy~dV~srvepLa------~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 143 VDNGSYDDVSSRVEPLA------GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred hccccHHHHHHHhhhcc------CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 67787877666555321 11223333455677888899999999999999888633
No 303
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=1.6 Score=41.89 Aligned_cols=214 Identities=15% Similarity=0.159 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhc--CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHH
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLST--NPSD--------EDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYL 90 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~--------~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 90 (666)
..++..++......++++++.++..++.. .|.+ ..+...++..|.+.|++++-..++....+.-.. +.
T Consensus 5 ~~~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~--v~ 82 (411)
T KOG1463|consen 5 ASLLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSS--VS 82 (411)
T ss_pred HHHHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH--hh
Confidence 34588888888899999999999999984 2222 345667888999999998888777776221110 11
Q ss_pred HHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----hhHHHHHHHHHHcCChhHH
Q 005990 91 KAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKID----SLEINFVAGLISAGRASEV 166 (666)
Q Consensus 91 ~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~l~~~~~~~g~~~~A 166 (666)
.+..-- -...-++.+...++.......+ +.++.+.+.+..-. ..+..++.+|...++|.+|
T Consensus 83 KakaaK---lvR~Lvd~~~~~~~~~~~~i~l------------~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteA 147 (411)
T KOG1463|consen 83 KAKAAK---LVRSLVDMFLKIDDGTGDQIEL------------CTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEA 147 (411)
T ss_pred hHHHHH---HHHHHHHHHccCCCCcchHHHH------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 110000 0001111222222222111111 11111111111111 1126778888888888888
Q ss_pred HHHHHHhhh----cC--CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHH
Q 005990 167 QKTLDSLRV----KA--TSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQ 240 (666)
Q Consensus 167 ~~~~~~~~~----~~--~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 240 (666)
+.....++. .+ +.-.++...-..+|+...+..+|...+..|........- |-. ..+.+-++-|.++
T Consensus 148 laL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYc-----pPq---lQa~lDLqSGIlh 219 (411)
T KOG1463|consen 148 LALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYC-----PPQ---LQATLDLQSGILH 219 (411)
T ss_pred HHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccccc-----CHH---HHHHHHHhcccee
Confidence 887665543 22 223456666778888999999999988888665422111 111 1123445556666
Q ss_pred HHcCChHHHHHHHHHHHhh
Q 005990 241 QLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 241 ~~~g~~~eA~~~~~~~l~~ 259 (666)
..-.+|.-|..+|-++++-
T Consensus 220 a~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 220 AAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred ecccccchHHHHHHHHHcc
Confidence 6667888888888887753
No 304
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.87 E-value=0.04 Score=37.30 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005990 22 DLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVA 63 (666)
Q Consensus 22 ~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~ 63 (666)
-+|..+..+++.|+|++|..+++.+|+.+|+|..+......+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 467888899999999999999999999999998777665443
No 305
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.83 E-value=0.23 Score=44.19 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-----HHHHHHHHHcCChhHHHHHHHHhhhcC--CChHH----H
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-----INFVAGLISAGRASEVQKTLDSLRVKA--TSSFE----L 183 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~----~ 183 (666)
...+..+|..|++.|++++|++.|.++......... .++..+.+..+++..+...+.++.... ..+++ +
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 467889999999999999999999998764333222 777788888999999998888775432 22333 3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 005990 184 AYNTACSLAEMNKYTEAEQLLLTARRIG 211 (666)
Q Consensus 184 ~~~la~~~~~~g~~~~A~~~l~~a~~~~ 211 (666)
....|..++..++|..|-+.|-.+..-.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 3456777888999999999987775433
No 306
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.79 E-value=0.087 Score=40.66 Aligned_cols=77 Identities=23% Similarity=0.286 Sum_probs=53.2
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCC
Q 005990 166 VQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGN 245 (666)
Q Consensus 166 A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 245 (666)
.+..++..+..+|++.++.+.+|..++..|++++|++.|-.++..++.. .++ .+.-.+-.++...|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~-------~~~------~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY-------EDD------AARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC-------CCC------HHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-------ccc------HHHHHHHHHHHHcCC
Confidence 3456677788999999999999999999999999999999999887542 112 355666666666666
Q ss_pred hHHHHHHHHH
Q 005990 246 TQEAFGAYTD 255 (666)
Q Consensus 246 ~~eA~~~~~~ 255 (666)
-+.-..-|++
T Consensus 74 ~~plv~~~RR 83 (90)
T PF14561_consen 74 GDPLVSEYRR 83 (90)
T ss_dssp T-HHHHHHHH
T ss_pred CChHHHHHHH
Confidence 5544444443
No 307
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.72 E-value=2.1 Score=42.04 Aligned_cols=177 Identities=10% Similarity=0.004 Sum_probs=125.8
Q ss_pred HhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHhhhcc-chhhhHHHHHHHHH----hCC
Q 005990 30 HIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKA----DNIDDALSTIQSSQKF-TFDFNYLKAYCLYR----QNR 100 (666)
Q Consensus 30 ~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~----g~~~~A~~~~~~~~~~-~~~~~~~~a~~~~~----~g~ 100 (666)
....+++..|+..+..+-.. .+..+...++.+|... .+..+|+.+|..+... .+...+.++.+|.. ..+
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccC
Confidence 34667888888888887653 3446778888887764 3578899999977444 35677778887776 448
Q ss_pred HHHHHHHHHhcC--CChhH---HHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCChhHHHHHHHHHH----cCChh
Q 005990 101 LDEALESLKIQE--NNPAT---MLLKSQILYRSG-------EMDACVEFYQKLQKSKIDSLEINFVAGLIS----AGRAS 164 (666)
Q Consensus 101 ~~~A~~~l~~~~--~~~~~---~~~la~~~~~~g-------~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~----~g~~~ 164 (666)
+.+|...+...- .+... .+.++.+|..-. +...|+..|.++..........+++.+|.. ..++.
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~ 208 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLK 208 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHH
Confidence 999999998833 25555 788888876642 233788999988766544444788877765 34788
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHhc---------------CHHHHHHHHHHHHHhh
Q 005990 165 EVQKTLDSLRVKATSSFELAYNTACSLAEMN---------------KYTEAEQLLLTARRIG 211 (666)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------------~~~~A~~~l~~a~~~~ 211 (666)
+|...|.++..... ...+++++ ++...| +...|...+..+....
T Consensus 209 ~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 209 KAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred HHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 99999999987765 77899999 666666 5555666666555544
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.62 E-value=0.22 Score=44.31 Aligned_cols=105 Identities=11% Similarity=0.037 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHH
Q 005990 386 KIILLARAQVAAAANHPFIAAESLAKIPDIQH----MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSV 461 (666)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 461 (666)
...+..++..|.+.|+++.|++.|.++.+... .-.++..++.+....+++..+..++.++-...... ++......
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~-~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG-GDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc-chHHHHHH
Confidence 34666777777777777777777777766543 22345666777777788888887777776654321 11111111
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHhcC
Q 005990 462 IMQEAASFKLRHGREEDASHLFEELVKTHG 491 (666)
Q Consensus 462 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 491 (666)
+-...|..++..++|.+|...|-.+.....
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 333447777889999999999988876553
No 309
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.62 E-value=0.17 Score=46.49 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 005990 181 FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRN 260 (666)
Q Consensus 181 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~ 260 (666)
..++..+|.+|...|+.+....++++|+......+..++.+.... +-..+.+.+|.++.+.|++++|+.+|.+++...
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~--~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGM--DEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCc--hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 557788899999999988888888888887766665544322111 112588899999999999999999999999754
Q ss_pred CC
Q 005990 261 LA 262 (666)
Q Consensus 261 ~~ 262 (666)
..
T Consensus 196 ~~ 197 (214)
T PF09986_consen 196 KA 197 (214)
T ss_pred CC
Confidence 43
No 310
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.48 E-value=0.51 Score=48.99 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=42.6
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCCChhHHHHHHHHHHHcCC
Q 005990 355 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGD 434 (666)
Q Consensus 355 ~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~ 434 (666)
...+..+.+...+.-|.++|.++-. .-.+++++...+++.+|..+.++.-+.-+ .++.-.+..+....+
T Consensus 751 ~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~--dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 751 LLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKD--DVYMPYAQWLAENDR 819 (1081)
T ss_pred HHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccc--cccchHHHHhhhhhh
Confidence 3333444444445555555544311 12345666677777777777666544332 344455556666666
Q ss_pred hhHHHHHHHHH
Q 005990 435 IDGAAAVLDSA 445 (666)
Q Consensus 435 ~~~A~~~l~~a 445 (666)
+++|.+.|.+|
T Consensus 820 FeEAqkAfhkA 830 (1081)
T KOG1538|consen 820 FEEAQKAFHKA 830 (1081)
T ss_pred HHHHHHHHHHh
Confidence 66666666554
No 311
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=2.1 Score=39.62 Aligned_cols=126 Identities=3% Similarity=0.063 Sum_probs=94.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCChhH-HHHHHHH--HHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHH-
Q 005990 123 QILYRSGEMDACVEFYQKLQKSKIDSLE-INFVAGL--ISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYT- 198 (666)
Q Consensus 123 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~- 198 (666)
-++.+...-..|+.+-+.+|..+|.+.. -++-... .-..+..+-++.+..++..+|.++.+|...-.+.-..|++.
T Consensus 51 AI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 51 AIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence 3445666777888888888988988877 1221111 11345667788888899999999999999888888888887
Q ss_pred HHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 005990 199 EAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLAD 263 (666)
Q Consensus 199 ~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~ 263 (666)
.-+++...++..+... -.+|...-.+....+.++.-+.+...+++.+.-+
T Consensus 131 rELef~~~~l~~DaKN---------------YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N 180 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKN---------------YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN 180 (318)
T ss_pred chHHHHHHHHhccccc---------------hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc
Confidence 7788888888766332 2477778888888888999888888888776544
No 312
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.34 E-value=0.75 Score=38.66 Aligned_cols=49 Identities=14% Similarity=0.073 Sum_probs=19.1
Q ss_pred hCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCc
Q 005990 364 ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP 413 (666)
Q Consensus 364 ~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 413 (666)
.++.+++..++..+--..|+... +...-+.+++..|++.+|+.+|+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e-~d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKE-LDMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccc-cchhHHHHHHHcCCHHHHHHHHHhhh
Confidence 33334444444333333343222 33333334444444444444444433
No 313
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=3 Score=42.91 Aligned_cols=71 Identities=11% Similarity=0.015 Sum_probs=57.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCC-hhhHHHHHHHHHHhcCC
Q 005990 422 VATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGR-EEDASHLFEELVKTHGS 492 (666)
Q Consensus 422 ~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~p~ 492 (666)
...+|.++.++|+...|..+|.-.++...............++.+|-+++..|. ..++..++.++-....|
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 367789999999999999999988876544433334445577899999999988 99999999999987766
No 314
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.13 E-value=1.3 Score=35.34 Aligned_cols=111 Identities=16% Similarity=0.079 Sum_probs=68.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHH
Q 005990 188 ACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSF 267 (666)
Q Consensus 188 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~ 267 (666)
|.-.+..|-|++|...+.+|.......+.++...-+.+ -+..+..|+..+..+|+|++++..-+.++...
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GF---DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF------- 85 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGF---DAFCHAGLSGALAGLGRYDECLQSADRALRYF------- 85 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHH---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccH---HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-------
Confidence 44556778999999999999999877665443332222 12466788889999999999998887776321
Q ss_pred HHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhc
Q 005990 268 AVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAAL 343 (666)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 343 (666)
.-.-.| ..-...+|....++.+..+-..|+.++|...|+.+
T Consensus 86 -----------------NRRGEL------------------~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 86 -----------------NRRGEL------------------HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp -----------------HHH--T------------------TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -----------------hhcccc------------------ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 000111 12223445555667777777888888887777654
No 315
>PRK10941 hypothetical protein; Provisional
Probab=94.97 E-value=0.17 Score=48.10 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHH
Q 005990 319 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV 395 (666)
Q Consensus 319 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~ 395 (666)
+..|+-.++...++++.|..+.+.++...|+++.-+..+|.+|.+.|.+..|+..|+..++..|+++. +.....++
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~-a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI-SEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh-HHHHHHHH
Confidence 55677778899999999999999999999999988889999999999999999999999999998654 44444443
No 316
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.65 E-value=0.41 Score=44.05 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccC------cchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhc
Q 005990 419 PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTE------DNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 490 (666)
Q Consensus 419 ~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 490 (666)
..+...++|+|...|+.+....++++|+..+...... ...-..++..+|.+..+.|++++|..+|.+++...
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4456788999999999888888888888776543211 11223466688999999999999999999999754
No 317
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=3.6 Score=40.67 Aligned_cols=132 Identities=12% Similarity=0.102 Sum_probs=94.2
Q ss_pred cHHHHHHHHHHH--hhhccHHHHHHHHHHHHhcCC-C--------CHHHHHHHHHHHHHcCCHHHHHHHHHhhhc---c-
Q 005990 19 PIEDLFTSLNRH--IERSEFEQAVKVADQVLSTNP-S--------DEDAMRCKVVALIKADNIDDALSTIQSSQK---F- 83 (666)
Q Consensus 19 ~~~~l~~~~~~~--~~~~~~~~A~~~~~~~l~~~p-~--------~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~---~- 83 (666)
.+++++..+..+ +.+.+|.+|.++.+..+.... . ....|+.+..+|-..|+...-...+..... +
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 466666555554 566899999999888765421 1 245667777788888886665555554421 1
Q ss_pred -c----hhhhHHHHHHHHHhCCHHHHHHHHHhcC--C------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH
Q 005990 84 -T----FDFNYLKAYCLYRQNRLDEALESLKIQE--N------NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE 150 (666)
Q Consensus 84 -~----~~~~~~~a~~~~~~g~~~~A~~~l~~~~--~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 150 (666)
+ ..+...+..+|...+.|+.|..+..+.+ + ..+.++.+|.+..-+++|..|.+++-+++...|.+..
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Confidence 1 1233466677888889999999998833 2 4566788999999999999999999999999997543
No 318
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=94.56 E-value=0.022 Score=39.05 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=25.8
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005990 561 KAKKKRKRKPRYPKGFDPANPGPPPDPERWLP 592 (666)
Q Consensus 561 ~~k~k~kr~~~~~k~~~p~~~~~~pdpERwlp 592 (666)
++|+|.+.++.|.+++.||||+|.|--||--.
T Consensus 26 kkkRk~rlPK~~dp~~~PDPERWLP~~dRS~y 57 (59)
T PF08492_consen 26 KKKRKPRLPKNYDPGKTPDPERWLPKRDRSYY 57 (59)
T ss_pred hhcccCCCCCCCCCCCCCCccccCchhhhccc
Confidence 44455667888999999999999999999543
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.54 E-value=0.09 Score=33.60 Aligned_cols=35 Identities=29% Similarity=0.248 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhc
Q 005990 181 FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETL 215 (666)
Q Consensus 181 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~ 215 (666)
..++.++|.+|...|++++|+.++++++.+....+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 36 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLL 36 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHh
Confidence 35788999999999999999999999999886543
No 320
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=4.2 Score=38.13 Aligned_cols=214 Identities=13% Similarity=0.127 Sum_probs=118.0
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHH
Q 005990 24 FTSLNRHIERSEFEQAVKVADQVLSTNPS--------DEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCL 95 (666)
Q Consensus 24 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~ 95 (666)
+..++.+....++++|+..+.++|..... ...+...++..|+..|++..--+.+....+.-.++. ..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft--k~--- 81 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT--KP--- 81 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc--ch---
Confidence 67888999999999999999999987321 144667788899999998876666655422111100 00
Q ss_pred HHhCCHHH-HHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhh
Q 005990 96 YRQNRLDE-ALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLR 174 (666)
Q Consensus 96 ~~~g~~~~-A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 174 (666)
+... -..+++..|.....+-....++...= +=|..-=+.+++. ..++.++.+++..|.|.+|+.....++
T Consensus 82 ----k~~KiirtLiekf~~~~dsl~dqi~v~~~~i--ewA~rEkr~fLr~---~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 82 ----KITKIIRTLIEKFPYSSDSLEDQIKVLTALI--EWADREKRKFLRL---ELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred ----hHHHHHHHHHHhcCCCCccHHHHHHHHHHHH--HHHHHHHHHHHHH---HHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 0000 11223333322211111111110000 0011111111110 112667777888888888887766553
Q ss_pred h------cCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHH
Q 005990 175 V------KATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQE 248 (666)
Q Consensus 175 ~------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~e 248 (666)
. ..+.-.+++..-..+|....+..++...+..|........- |... .+.+-+.-|..+..-.+|.-
T Consensus 153 ~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC-----Ppql---qa~lDL~sGIlhcdd~dykt 224 (421)
T COG5159 153 HELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC-----PPQL---QAQLDLLSGILHCDDRDYKT 224 (421)
T ss_pred HHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC-----CHHH---HHHHHHhccceeeccccchh
Confidence 2 22444566777778888888888888888777665421110 1111 11233444555666678888
Q ss_pred HHHHHHHHHhh
Q 005990 249 AFGAYTDIIKR 259 (666)
Q Consensus 249 A~~~~~~~l~~ 259 (666)
|..+|-++++-
T Consensus 225 A~SYF~Ea~Eg 235 (421)
T COG5159 225 ASSYFIEALEG 235 (421)
T ss_pred HHHHHHHHHhc
Confidence 88888877753
No 321
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.46 E-value=9.3 Score=41.83 Aligned_cols=373 Identities=12% Similarity=0.016 Sum_probs=145.9
Q ss_pred chhhhHHHHHHHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHc-------CCHHHHHHHHHHHHhhCCC--hhH
Q 005990 84 TFDFNYLKAYCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRS-------GEMDACVEFYQKLQKSKID--SLE 150 (666)
Q Consensus 84 ~~~~~~~~a~~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~-------g~~~~A~~~~~~~l~~~p~--~~~ 150 (666)
+....+.+.|.+.|.|.+++|.++... ..............+... ..-+.-...|++.++..++ ...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK 189 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYK 189 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHH
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 345566778888999999999999933 222222222222222221 1223455567776665553 222
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHhh-hhhccCCCCChhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYT-----EAEQLLLTARRIG-QETLTDDNFAEDD 224 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-----~A~~~l~~a~~~~-~~~~~~~~~~~~~ 224 (666)
..+-.+. |.-+-....+. .+...-+++ +|+.+..+-.....-+ -.+.-+++.+... +..+. +
T Consensus 190 ~AvY~il---g~cD~~~~~~~-~V~~tiED~-LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~-----~-- 257 (613)
T PF04097_consen 190 RAVYKIL---GRCDLSRRHLP-EVARTIEDW-LWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFN-----A-- 257 (613)
T ss_dssp HHHHHHH---HT--CCC-S-T-TC--SHHHH-HHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCT-----T--
T ss_pred HHHHHHH---hcCCccccchH-HHhCcHHHH-HHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhcc-----c--
Confidence 1111111 21111110000 011112234 6777776655543211 2445555555422 21111 1
Q ss_pred HhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhh
Q 005990 225 IEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLA 304 (666)
Q Consensus 225 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~ 304 (666)
..--.....++...|.|+.|++++-+ ......+...++++.+.+..+....... ..++...+
T Consensus 258 -----~~~p~~Yf~~LlLtgqFE~AI~~L~~-~~~~~~dAVH~AIaL~~~gLL~~~~~~~------~~lls~~~------ 319 (613)
T PF04097_consen 258 -----GSNPLLYFQVLLLTGQFEAAIEFLYR-NEFNRVDAVHFAIALAYYGLLRVSDSSS------APLLSVDP------ 319 (613)
T ss_dssp -----------HHHHHHHTT-HHHHHHHHHT---T-HHHHHHHHHHHHHTT-----------------------------
T ss_pred -----chhHHHHHHHHHHHhhHHHHHHHHHh-hccCcccHHHHHHHHHHcCCCCCCCccc------cceeeecC------
Confidence 01223344678889999999999887 2223334444455544443333222210 00000000
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhcccc-CCCCch-HHHHHHHHHHhhCChh--------------
Q 005990 305 RVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM-FPDSVM-PLLLQAAVLVRENKAG-------------- 368 (666)
Q Consensus 305 ~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~-~~~~~a~~~~~~g~~~-------------- 368 (666)
. ....-....+...++. .+...+..+|..++--+... +|+... .+-....+....++++
T Consensus 320 ---~-~~~~ln~arLI~~Y~~-~F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~ 394 (613)
T PF04097_consen 320 ---G-DPPPLNFARLIGQYTR-SFEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTP 394 (613)
T ss_dssp -----------HHHHHHHHHH-TTTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE
T ss_pred ---C-CCCCcCHHHHHHHHHH-HHhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCcccc
Confidence 0 0000000011111111 33455666777776554332 222221 1222222333333221
Q ss_pred HHHHHHHHHHhhCC--ChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCCChh-HHHHHHHHHHHcCC-------hhHH
Q 005990 369 KAEELLGQFAEKLP--DKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPA-TVATLVALKERAGD-------IDGA 438 (666)
Q Consensus 369 ~A~~~l~~~~~~~p--~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~~~l~~~~~~~g~-------~~~A 438 (666)
..++-...++.... +....+....|.-....|++++|+.+|.-+-+.+.--. +...|+.+...... .+.-
T Consensus 395 G~i~~~~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l 474 (613)
T PF04097_consen 395 GLIERRLSLIKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERL 474 (613)
T ss_dssp -HHHHTGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSH
T ss_pred ceeeccccccCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhH
Confidence 22332222333322 22333555666777788999999988887765443222 22444444444333 1222
Q ss_pred HHHHHHHHHHHHHhcc----Cc---chHHHHHHHHHHHH--HhCCChhhHHHHHHHHHHhcCC
Q 005990 439 AAVLDSAIKWWLNAMT----ED---NKLSVIMQEAASFK--LRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 439 ~~~l~~a~~~~~~~~~----~~---~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
...-...++.+..+.. .+ ......+..+..++ +..|++++|++.++++- +-|.
T Consensus 475 ~~la~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~-liP~ 536 (613)
T PF04097_consen 475 IELAKEILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD-LIPL 536 (613)
T ss_dssp HHHHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT--S-S
T ss_pred HHHHHHHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC
Confidence 2222333333322111 01 11122333444443 67778888877777653 4454
No 322
>PRK10941 hypothetical protein; Provisional
Probab=94.38 E-value=0.3 Score=46.54 Aligned_cols=63 Identities=11% Similarity=-0.078 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
.|+-.+|...++++.|+.+.+.++...|+++.-+.-.|.+|.++|.+..|..-|+..++.||+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 778888999999999999999999999999999999999999999999999999999999965
No 323
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.36 E-value=0.12 Score=34.95 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE 150 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 150 (666)
..++.+|..++++|+|++|..+.+.+++..|++..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 46788899999999999999999999999998876
No 324
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=94.26 E-value=3.8 Score=39.23 Aligned_cols=163 Identities=17% Similarity=0.049 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCC
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNR 100 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~ 100 (666)
..-+.......+..+..+-++....+|+++|....++..++.-- .--..+|..+|+++.+... ..+.........|.
T Consensus 185 r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e-~~yr~sqq~qh~~~ 261 (556)
T KOG3807|consen 185 RPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE-TIYRQSQQCQHQSP 261 (556)
T ss_pred ChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH-HHHhhHHHHhhhcc
Confidence 33455566677888889999999999999999988888877532 2335677888887744322 11222222222222
Q ss_pred HHHHHHHHHhcCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH----HHHHHHHHHcCChhHHHHHHHHhhh
Q 005990 101 LDEALESLKIQEN-NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE----INFVAGLISAGRASEVQKTLDSLRV 175 (666)
Q Consensus 101 ~~~A~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 175 (666)
..+|.. ....+ -..+...+|.+..++|+..+|++.++.+.+..|-... -|+..++....-|.+...++-+.-.
T Consensus 262 ~~da~~--rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 262 QHEAQL--RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred chhhhh--hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 222211 11111 2344567899999999999999999999887763222 6677777766666666655544433
Q ss_pred c-CCChHHHHHHHH
Q 005990 176 K-ATSSFELAYNTA 188 (666)
Q Consensus 176 ~-~~~~~~~~~~la 188 (666)
. -|.+....|..|
T Consensus 340 islPkSA~icYTaA 353 (556)
T KOG3807|consen 340 ISLPKSAAICYTAA 353 (556)
T ss_pred ccCcchHHHHHHHH
Confidence 2 255554554433
No 325
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.24 E-value=3 Score=43.24 Aligned_cols=123 Identities=11% Similarity=0.046 Sum_probs=65.3
Q ss_pred HhCCHHHHHHHHHh---cCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-HHHHHHHHHcCChhHHHHHHH
Q 005990 97 RQNRLDEALESLKI---QEN-NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-INFVAGLISAGRASEVQKTLD 171 (666)
Q Consensus 97 ~~g~~~~A~~~l~~---~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~ 171 (666)
-.++++++...+.. .|. ........+..+.+.|..+.|+.+-+. ... ..| ..+.|+++.|.++.+
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-------~~~rFeL---Al~lg~L~~A~~~a~ 342 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-------PDHRFEL---ALQLGNLDIALEIAK 342 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS--------HHHHHHH---HHHCT-HHHHHHHCC
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-------hHHHhHH---HHhcCCHHHHHHHHH
Confidence 35666665444431 111 234455666667777766666654432 111 222 356777777776433
Q ss_pred HhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHH
Q 005990 172 SLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFG 251 (666)
Q Consensus 172 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~ 251 (666)
. .++...|-.+|...+..|+++-|+++|+++-... .|..+|...|+.+.=.+
T Consensus 343 ~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~-----------------------~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 343 E-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKDFS-----------------------GLLLLYSSTGDREKLSK 394 (443)
T ss_dssp C-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH-----------------------HHHHHHHHCT-HHHHHH
T ss_pred h-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc-----------------------ccHHHHHHhCCHHHHHH
Confidence 2 3356688888888888888888888887764333 45556666777654444
Q ss_pred HHHHHH
Q 005990 252 AYTDII 257 (666)
Q Consensus 252 ~~~~~l 257 (666)
+.+.+.
T Consensus 395 l~~~a~ 400 (443)
T PF04053_consen 395 LAKIAE 400 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 326
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.21 E-value=1.7 Score=38.90 Aligned_cols=78 Identities=13% Similarity=0.010 Sum_probs=58.8
Q ss_pred cCChhHHHHHHhcCcCCCC--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCCh
Q 005990 399 ANHPFIAAESLAKIPDIQH--MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGRE 476 (666)
Q Consensus 399 ~g~~~~A~~~l~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 476 (666)
.-.-++|...|-++-.... ++++...|+..|. .-+.++++.+|.++++....+...+++ ++..++.++...|++
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~e---il~sLas~~~~~~~~ 194 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPE---ILKSLASIYQKLKNY 194 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHhcch
Confidence 3345677777777644333 7888888988887 567889999999999988655334443 777899999999999
Q ss_pred hhHH
Q 005990 477 EDAS 480 (666)
Q Consensus 477 ~~A~ 480 (666)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9874
No 327
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.17 E-value=0.092 Score=30.81 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005990 231 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA 262 (666)
Q Consensus 231 ~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~ 262 (666)
.+++.+|.++..+|++++|+..|..++...|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 37889999999999999999999999987764
No 328
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.12 E-value=0.095 Score=30.75 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKID 147 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 147 (666)
.++..+|.++...|++++|+..|+.+++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46778899999999999999999988877664
No 329
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.06 E-value=0.58 Score=36.13 Aligned_cols=65 Identities=22% Similarity=0.071 Sum_probs=36.3
Q ss_pred HHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC---ChhHHHHHHHHHHHcCChh
Q 005990 371 EELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH---MPATVATLVALKERAGDID 436 (666)
Q Consensus 371 ~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~---~~~~~~~l~~~~~~~g~~~ 436 (666)
+..++..+..+|++.. +.+.+|..+...|++++|++.|-.++..++ +......+..++...|.-+
T Consensus 8 ~~al~~~~a~~P~D~~-ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 8 IAALEAALAANPDDLD-ARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHSTT-HH-HHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHcCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4455666666776543 666777777777777777777766666554 2333445555555555543
No 330
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.03 E-value=0.44 Score=37.80 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 005990 165 EVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARR 209 (666)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 209 (666)
.++++|.+...+.|.....+|.+|.-+-..-.|+++..--++++.
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 367778888888888877777777665444445555555444443
No 331
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.97 E-value=0.37 Score=35.38 Aligned_cols=60 Identities=15% Similarity=0.125 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHh
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCK---VVALIKADNIDDALSTIQS 79 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~---~~~~~~~g~~~~A~~~~~~ 79 (666)
+...+..+..++...+.++|+....++|+..++..+-+..+ ..+|...|+|.+.+.+--.
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888889999999999999999999988776665554 4578889999998876443
No 332
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.73 E-value=13 Score=40.82 Aligned_cols=119 Identities=6% Similarity=-0.025 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHhhhccch--hhhHHHHHHHH
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIK--ADNIDDALSTIQSSQKFTF--DFNYLKAYCLY 96 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~--~g~~~~A~~~~~~~~~~~~--~~~~~~a~~~~ 96 (666)
...|..+...+..|++..+.....++ .-+|-. .+......... ...+++...++.+-..... .+.-..-..+.
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL~--~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La 110 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPLY--PYLEYRQLTQDLMNQPAVQVTNFIRANPTLPPARSLQSRFVNELA 110 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCcH--hHHHHHHHHhccccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 56788888888888888776665543 333321 12222222222 2246666666665532211 12222223344
Q ss_pred HhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005990 97 RQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQ 142 (666)
Q Consensus 97 ~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 142 (666)
+.++..+.+.++...|.+.......++.++..|+-++|....+.+-
T Consensus 111 ~~~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW 156 (644)
T PRK11619 111 RREDWRGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELW 156 (644)
T ss_pred HccCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5677777777444556677777777777888888777777666663
No 333
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=12 Score=40.36 Aligned_cols=104 Identities=18% Similarity=0.150 Sum_probs=72.5
Q ss_pred HHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChh
Q 005990 324 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPF 403 (666)
Q Consensus 324 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~ 403 (666)
..-++..|+..+|.++-.++.- | +...+++....+...++|++-.++-+. .. ++. .+.-....+...|+.+
T Consensus 691 v~~li~~g~~k~a~ql~~~Fki--p-dKr~~wLk~~aLa~~~kweeLekfAks---kk--sPI-Gy~PFVe~c~~~~n~~ 761 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKI--P-DKRLWWLKLTALADIKKWEELEKFAKS---KK--SPI-GYLPFVEACLKQGNKD 761 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCC--c-chhhHHHHHHHHHhhhhHHHHHHHHhc---cC--CCC-CchhHHHHHHhcccHH
Confidence 3446778888888887766532 2 345677777888899999775554332 22 123 4455667788999999
Q ss_pred HHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHH
Q 005990 404 IAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLD 443 (666)
Q Consensus 404 ~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 443 (666)
+|..++-+.-... ..+.+|.+.|++.+|.++--
T Consensus 762 EA~KYiprv~~l~-------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 762 EAKKYIPRVGGLQ-------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHhhhhhccCChH-------HHHHHHHHhccHHHHHHHHH
Confidence 9999998764321 57888999999998887643
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.53 E-value=2.7 Score=47.32 Aligned_cols=137 Identities=18% Similarity=0.081 Sum_probs=82.2
Q ss_pred HHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005990 64 LIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQEN-NPATMLLKSQILYRSGEMDACVEFYQKLQ 142 (666)
Q Consensus 64 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l 142 (666)
-..+++|+.|+..+..+. ...+-+.-..--+.|-|.+|+.++.-.++ ...++...|+-+.....+++|.-.|+..-
T Consensus 890 D~~L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G 966 (1265)
T KOG1920|consen 890 DDYLKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCG 966 (1265)
T ss_pred HHHHHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhc
Confidence 344678888888887763 22222333333445667777777655433 45677778888888888888888887652
Q ss_pred hhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 005990 143 KSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARR 209 (666)
Q Consensus 143 ~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 209 (666)
+. -.-..+|...|++.+|+.+..++-.....-......++.-+...+++-+|-+.+...+.
T Consensus 967 kl------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 967 KL------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred cH------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 21 11123455677777777766544222111222236667777778888777777665543
No 335
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.50 E-value=0.16 Score=32.34 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005990 231 PIAVQLAYVQQLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 231 ~~~~~la~~~~~~g~~~eA~~~~~~~l~~ 259 (666)
.++.++|.+|..+|++++|+.++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 57899999999999999999999999864
No 336
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.43 E-value=1.2 Score=50.58 Aligned_cols=162 Identities=15% Similarity=0.031 Sum_probs=113.7
Q ss_pred HHHHHHHHHhCCHHHHHH------HHHh-----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCChhH--
Q 005990 89 YLKAYCLYRQNRLDEALE------SLKI-----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKS-----KIDSLE-- 150 (666)
Q Consensus 89 ~~~a~~~~~~g~~~~A~~------~l~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~-- 150 (666)
++.+......|.+.+|.+ ++.. .|+....+..++.+++++|++++|+..-.++.-. .-+...
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 345555555666777766 4443 3556788899999999999999999988776321 112222
Q ss_pred ---HHHHHHHHHcCChhHHHHHHHHhhh--------cCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCC
Q 005990 151 ---INFVAGLISAGRASEVQKTLDSLRV--------KATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDN 219 (666)
Q Consensus 151 ---~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~ 219 (666)
.+++...+..++...|+..+.++.. ..|.......+++.++...++++.|+.+++.|..........
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~-- 1093 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP-- 1093 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc--
Confidence 6677666667777888887776654 346666677889999999999999999999999977554331
Q ss_pred CChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005990 220 FAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDII 257 (666)
Q Consensus 220 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l 257 (666)
.. -+.+..+..++.++..++++..|+...+...
T Consensus 1094 ---~~--l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1094 ---KE--LETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred ---cc--hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 11 2234566777777777777777776666554
No 337
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=7 Score=36.78 Aligned_cols=283 Identities=13% Similarity=0.044 Sum_probs=147.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHH---HhhCC
Q 005990 185 YNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDI---IKRNL 261 (666)
Q Consensus 185 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~---l~~~~ 261 (666)
..+|.-....+++++|+..|.+.+.....- .+....+--.....++.+|...|++..-.+..... .....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~-------dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSK-------DEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCCh-------hhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc
Confidence 445667778899999999999988763210 11111223357789999999999876544433322 21111
Q ss_pred CCHhHHHHHHhhhhhccC-CCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 005990 262 ADESSFAVAVNNLVALKG-PKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELV 340 (666)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~ 340 (666)
.+....+....+-.+.+ .....+.+..+..+++=.. ..-...-+..+...++.+++..|+|.+|+.++
T Consensus 80 -k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~----------rEkr~fLr~~Le~Kli~l~y~~~~YsdalalI 148 (421)
T COG5159 80 -KPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWAD----------REKRKFLRLELECKLIYLLYKTGKYSDALALI 148 (421)
T ss_pred -chhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 11111111222222222 2222333444433322110 00001112223345577899999999999888
Q ss_pred Hhcccc---C---CCCchHHHHHHHHHHhhCChhHHHHHHHHHHhh-----CCChhH-HHHHHHHHHHHHcCChhHHHHH
Q 005990 341 AALPDM---F---PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK-----LPDKSK-IILLARAQVAAAANHPFIAAES 408 (666)
Q Consensus 341 ~~~~~~---~---p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~-----~p~~~~-~~~~~la~~~~~~g~~~~A~~~ 408 (666)
..++.. + +.-...+++...+|....+..++..-+..+-.. .|.... .+-+.-+.+++...+|.-|..+
T Consensus 149 n~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SY 228 (421)
T COG5159 149 NPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSY 228 (421)
T ss_pred HHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHH
Confidence 776543 2 233467788888888888888877776654322 233211 1223334556777889999888
Q ss_pred HhcCcCCCC----ChhHH---HHHHHHHHHcCChhHHHHHHH--HHHHHHHHhccCcchHHHHHHHHHHHHH--hCCChh
Q 005990 409 LAKIPDIQH----MPATV---ATLVALKERAGDIDGAAAVLD--SAIKWWLNAMTEDNKLSVIMQEAASFKL--RHGREE 477 (666)
Q Consensus 409 l~~~~~~~~----~~~~~---~~l~~~~~~~g~~~~A~~~l~--~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~ 477 (666)
|-.+.+-.. +.... ..+.---...+..++...+++ ..++.+. .....++...+..+- ...++.
T Consensus 229 F~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~------~r~I~am~avaea~~NRsL~df~ 302 (421)
T COG5159 229 FIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYD------DRMIRAMLAVAEAFGNRSLKDFS 302 (421)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhh------hhhHHHHHHHHHHhCCCcHhhHH
Confidence 887766332 22111 111111223455555555554 2333331 122234555555553 234666
Q ss_pred hHHHHHHHHHHhcC
Q 005990 478 DASHLFEELVKTHG 491 (666)
Q Consensus 478 ~A~~~~~~~l~~~p 491 (666)
.|...|+.-+..+|
T Consensus 303 ~aL~qY~~el~~D~ 316 (421)
T COG5159 303 DALAQYSDELHQDS 316 (421)
T ss_pred HHHHHhhHHhccCH
Confidence 77777766554443
No 338
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.40 E-value=0.55 Score=36.75 Aligned_cols=66 Identities=20% Similarity=0.213 Sum_probs=50.5
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 005990 189 CSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRN 260 (666)
Q Consensus 189 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~ 260 (666)
...+..|+|..|++.+.+........... .. ...+..+.+.+|.++...|++++|+..+++++.+-
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~-----~~-~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNS-----SS-NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccc-----hh-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34567899999999999999887543211 10 11344678899999999999999999999998654
No 339
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.31 E-value=0.79 Score=35.83 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=48.8
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhccCc--chHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcC
Q 005990 428 LKERAGDIDGAAAVLDSAIKWWLNAMTED--NKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG 491 (666)
Q Consensus 428 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 491 (666)
...+.|++..|.+.+.+.+.......... ......+..+|.++...|++++|...+++++++.-
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34568899999999988888765544322 12334566789999999999999999999998763
No 340
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=11 Score=37.62 Aligned_cols=453 Identities=15% Similarity=0.120 Sum_probs=220.8
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-CCCHHHHHH--HHHHHHHcCCHHHH-HHHHHhhhccchhhhHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTN-PSDEDAMRC--KVVALIKADNIDDA-LSTIQSSQKFTFDFNYL 90 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~a~~~--~~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~ 90 (666)
.+|.++.. -..+...+.+++..++.-+|+.+-+.+ |-.+.+... ..+||+...+.-=| .+.|-...... +
T Consensus 111 ~~~~~V~~-E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-----E 184 (625)
T KOG4422|consen 111 ADPLQVET-ENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-----E 184 (625)
T ss_pred CCchhhcc-hhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-----c
Confidence 45665552 334445678899999999999987764 334444333 34566655543311 11111111111 1
Q ss_pred HHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-hhH---HHHHHHHHHcCChhHH
Q 005990 91 KAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKID-SLE---INFVAGLISAGRASEV 166 (666)
Q Consensus 91 ~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~---~~l~~~~~~~g~~~~A 166 (666)
..-.-++.|...+ -+++..|..+..+..+..-+.+--..+.|.++|++.-..... +.+ -.++.+-+..|
T Consensus 185 ~S~~sWK~G~vAd--L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----- 257 (625)
T KOG4422|consen 185 DSTSSWKSGAVAD--LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----- 257 (625)
T ss_pred ccccccccccHHH--HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-----
Confidence 1111234555544 455667775555554444444446678888888877432211 111 22222222233
Q ss_pred HHHHHHhhh--cCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcC
Q 005990 167 QKTLDSLRV--KATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLG 244 (666)
Q Consensus 167 ~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 244 (666)
..++.+++. ..|+-. .+..+-.|...-|+|+.|...+-+++.--... .++|.+. .++.+..++.+.+
T Consensus 258 K~Lv~EMisqkm~Pnl~-TfNalL~c~akfg~F~~ar~aalqil~EmKei---------GVePsLs-Syh~iik~f~re~ 326 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLF-TFNALLSCAAKFGKFEDARKAALQILGEMKEI---------GVEPSLS-SYHLIIKNFKRES 326 (625)
T ss_pred HHHHHHHHHhhcCCchH-hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh---------CCCcchh-hHHHHHHHhcccC
Confidence 333333332 445544 56666677788899999888877776543221 1113333 4444444555555
Q ss_pred Ch-HHHHHHHHHHHhh---------CCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHH
Q 005990 245 NT-QEAFGAYTDIIKR---------NLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPK 314 (666)
Q Consensus 245 ~~-~eA~~~~~~~l~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 314 (666)
+. .-|..+...+... .|.+.-++..+...+..+.+. .....+..+++.+.+. ......
T Consensus 327 dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~----~LA~~v~~ll~tg~N~--------~~ig~~ 394 (625)
T KOG4422|consen 327 DPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDL----ELAYQVHGLLKTGDNW--------KFIGPD 394 (625)
T ss_pred CchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhH----HHHHHHHHHHHcCCch--------hhcChH
Confidence 44 3466666655432 344443333333322222111 1222333343333221 223334
Q ss_pred HHHHHH-HHHHHHHHHcCChHHHHHHHHhcccc--CCCCch-HHHHHHHHHHhhCChhHHH-------------------
Q 005990 315 QREAIY-ANRVLLLLHANKMDQARELVAALPDM--FPDSVM-PLLLQAAVLVRENKAGKAE------------------- 371 (666)
Q Consensus 315 q~~~~~-~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~-~~~~~a~~~~~~g~~~~A~------------------- 371 (666)
+...++ .+...+.++....+.-...|+.+.-. +|++.. .++++ +....|.++---
T Consensus 395 ~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr--A~~v~~~~e~ipRiw~D~~~~ght~r~~l~e 472 (625)
T KOG4422|consen 395 QHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR--ALDVANRLEVIPRIWKDSKEYGHTFRSDLRE 472 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH--HHhhcCcchhHHHHHHHHHHhhhhhhHHHHH
Confidence 444443 34455567777778888888877654 455432 22222 222223222111
Q ss_pred HHHHHHHh--hCCChhHH--HHHHHHHHHHHc-CChhHHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005990 372 ELLGQFAE--KLPDKSKI--ILLARAQVAAAA-NHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAI 446 (666)
Q Consensus 372 ~~l~~~~~--~~p~~~~~--~~~~la~~~~~~-g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~ 446 (666)
.++..+.. .+|..+.. +....+.+.... ..++.+..-. ....-.+..+...+.++.+.|++++|.++|.-.+
T Consensus 473 eil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~---r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~ 549 (625)
T KOG4422|consen 473 EILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQ---RAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFL 549 (625)
T ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH---HhccCChhHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 11112221 12322211 111112221111 1111111111 1222255567788888999999999999988776
Q ss_pred HHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhc-CChHHHHHHHHhhccCChhh
Q 005990 447 KWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH-GSIEALVGLVTTSAHVDVDK 510 (666)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~l~~l~~~~~~~d~~~ 510 (666)
..... .. -......+..+.+......+...|+.+++-++..+ |..+.++.-+..-...+.+.
T Consensus 550 ~~~~~-ip-~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq 612 (625)
T KOG4422|consen 550 RKHNK-IP-RSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQ 612 (625)
T ss_pred hcCCc-CC-CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHH
Confidence 43211 11 12222344455666677788888888888887665 33555555554434444443
No 341
>PF13041 PPR_2: PPR repeat family
Probab=92.38 E-value=0.64 Score=31.14 Aligned_cols=43 Identities=21% Similarity=0.137 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHhc--CChHHHHHHHHhhc
Q 005990 462 IMQEAASFKLRHGREEDASHLFEELVKTH--GSIEALVGLVTTSA 504 (666)
Q Consensus 462 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~l~~l~~~~~ 504 (666)
.|..+...+.+.|++++|.++|+++.+.. ||..+...++.++.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 56677888999999999999999999876 88777777777664
No 342
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.35 E-value=0.27 Score=49.10 Aligned_cols=122 Identities=7% Similarity=-0.042 Sum_probs=83.0
Q ss_pred HHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHH
Q 005990 327 LLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAA 406 (666)
Q Consensus 327 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~ 406 (666)
.+..|+...|..-+..++..+|.++....+.+.+....|.|+.+...+..+-..-...+. ....+..-....|++++|.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~-~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDS-TLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCch-HHHHHHHhhhchhhHHHHH
Confidence 467788888888888888888888888888888888888888888777654333222122 3444555566778888888
Q ss_pred HHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 005990 407 ESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWW 449 (666)
Q Consensus 407 ~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~ 449 (666)
...+-++...- +|+++...+..-..+|-++++.-++.+.+.+.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88887766544 67766555555555666666666666665554
No 343
>PRK12798 chemotaxis protein; Reviewed
Probab=92.28 E-value=14 Score=37.24 Aligned_cols=205 Identities=20% Similarity=0.125 Sum_probs=135.7
Q ss_pred HHHHHHcCChHHHHHHHHhccccC-CCCchHHHHHHH-HHHhhCChhHHHHHHHHHHhhCCChh--HHHHHHHHHHHHHc
Q 005990 324 VLLLLHANKMDQARELVAALPDMF-PDSVMPLLLQAA-VLVRENKAGKAEELLGQFAEKLPDKS--KIILLARAQVAAAA 399 (666)
Q Consensus 324 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~-~~~~~g~~~~A~~~l~~~~~~~p~~~--~~~~~~la~~~~~~ 399 (666)
+.+.+-.|+-.++.+.+..+...+ |.....++.++. .++...+..+|+.+|..+--..|... ..++-.-..+....
T Consensus 119 g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~ 198 (421)
T PRK12798 119 GALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQL 198 (421)
T ss_pred HHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhc
Confidence 667788999999999998876543 333344444433 34557789999999999888888742 22444445566788
Q ss_pred CChhHHHHHHhcCcCCCC----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCC
Q 005990 400 NHPFIAAESLAKIPDIQH----MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGR 475 (666)
Q Consensus 400 g~~~~A~~~l~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 475 (666)
|+.+++..+..+.+.... ...++..++..+.+.++-.. ...+..++... +...-..+|..++..-+..|+
T Consensus 199 g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~~-----d~~~q~~lYL~iAR~Ali~Gk 272 (421)
T PRK12798 199 GDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSFM-----DPERQRELYLRIARAALIDGK 272 (421)
T ss_pred CcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHhc-----CchhHHHHHHHHHHHHHHcCc
Confidence 999988776666554332 22344555555555553322 23355555543 112233477789999999999
Q ss_pred hhhHHHHHHHHHHhcCC---hHHHHHHHHhhccCChhhHHHHHhcCCCCC--CCCCCChHHHhh
Q 005990 476 EEDASHLFEELVKTHGS---IEALVGLVTTSAHVDVDKAESYEKRLKPLP--GLNGVDVDSLEK 534 (666)
Q Consensus 476 ~~~A~~~~~~~l~~~p~---~~~l~~l~~~~~~~d~~~a~~~~~~l~~~~--~~~~~d~~~Le~ 534 (666)
.+-|.-.-++++.+... ....+.|..+.+......+.+....|..|+ .++.-|..-|+.
T Consensus 273 ~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~Ll~A 336 (421)
T PRK12798 273 TELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRALLEA 336 (421)
T ss_pred HHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHHHHH
Confidence 99999999999988743 566677887777666666666666666654 367777777763
No 344
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=92.19 E-value=0.55 Score=44.18 Aligned_cols=72 Identities=10% Similarity=0.034 Sum_probs=58.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHH
Q 005990 119 LLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACS 190 (666)
Q Consensus 119 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 190 (666)
...|.-.++.|+.+.|..+|+.++...|++.+ +.+|......++.-+|-.+|-+++..+|.+.+++.+.+..
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 44556667889999999999999999998888 6777776667778888888888888889888888776653
No 345
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.06 E-value=1 Score=35.79 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=28.9
Q ss_pred HHHHHHcCChHHHHHHHHhccccCCCCc---hHHHHHHHHHHh
Q 005990 324 VLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVR 363 (666)
Q Consensus 324 a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~ 363 (666)
+.-++..|++-+|+++++.++..++++. ..+...|.++..
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~ 45 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYK 45 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHH
Confidence 5667888999999999999988877766 344455555443
No 346
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.70 E-value=0.78 Score=37.66 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCh---HHHHHHHHhccc-cCCCCc-hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChh
Q 005990 321 ANRVLLLLHANKM---DQARELVAALPD-MFPDSV-MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS 385 (666)
Q Consensus 321 ~~~a~~~~~~~~~---~~A~~~~~~~~~-~~p~~~-~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~ 385 (666)
+|++..+..+.+. .+.+.+++.+.+ ..|+.. ...+++|..+++.++|+.++.++..+++..|++.
T Consensus 36 f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 36 FNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 4444444444333 234445555543 333322 3445555555555555555555555555555543
No 347
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.64 E-value=12 Score=35.03 Aligned_cols=174 Identities=16% Similarity=0.052 Sum_probs=95.7
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHH
Q 005990 239 VQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREA 318 (666)
Q Consensus 239 ~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~ 318 (666)
++........|+.+...++.++|.+-.++..-...+-.+.. +...-+..++++++..+.+-+
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~--dL~~El~~l~eI~e~npKNYQ---------------- 113 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMS--DLNKELEYLDEIIEDNPKNYQ---------------- 113 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH--HHHHHHHHHHHHHHhCccchh----------------
Confidence 44455566778888888888888776555444333332222 223444444444443221111
Q ss_pred HHHHHHHHHHHcCChH-HHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHH
Q 005990 319 IYANRVLLLLHANKMD-QARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 397 (666)
Q Consensus 319 ~~~~~a~~~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~ 397 (666)
+...+-.+....|+.. .-++++..++..+..+..++..+-.++..-+.++.-+.+...+++.+-.+.. ++...-.+..
T Consensus 114 vWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS-AWN~Ryfvi~ 192 (318)
T KOG0530|consen 114 VWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS-AWNQRYFVIT 192 (318)
T ss_pred HHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc-hhheeeEEEE
Confidence 1222223334445555 5567777777777777777777777777777788888888888876543322 2222211111
Q ss_pred H-cCC-----hhHHHHHHhcCcCCCC-ChhHHHHHHHHHHH
Q 005990 398 A-ANH-----PFIAAESLAKIPDIQH-MPATVATLVALKER 431 (666)
Q Consensus 398 ~-~g~-----~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~ 431 (666)
. .|- .+.-+.+....+...| +...|..|..++..
T Consensus 193 ~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 193 NTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred eccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 1 111 2233445555566667 66677777777765
No 348
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.46 E-value=0.31 Score=27.31 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHH
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQ 139 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~ 139 (666)
.+.+.+|.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345666667777777777666654
No 349
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.38 E-value=22 Score=37.70 Aligned_cols=89 Identities=17% Similarity=0.251 Sum_probs=73.5
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhH---HHH
Q 005990 22 DLFTSLNRHIERSEFEQAVKVADQVLSTNPSD------EDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNY---LKA 92 (666)
Q Consensus 22 ~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~a 92 (666)
-|+..+..+++..+|..+++.|...+...|.| ....+.+..||+.+.+.+.|.++++++.+.++...+ ...
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 46788889999999999999999999887765 456778899999999999999999999877765444 455
Q ss_pred HHHHHhCCHHHHHHHHHh
Q 005990 93 YCLYRQNRLDEALESLKI 110 (666)
Q Consensus 93 ~~~~~~g~~~~A~~~l~~ 110 (666)
.+....|.-++|+.++..
T Consensus 436 ~~~~~E~~Se~AL~~~~~ 453 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQK 453 (872)
T ss_pred HHHHHhcchHHHHHHHHH
Confidence 556678888898887765
No 350
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.34 E-value=26 Score=38.47 Aligned_cols=224 Identities=15% Similarity=0.104 Sum_probs=115.1
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-c----------------
Q 005990 23 LFTSLNRHIERSEFEQAVKVADQVLSTNPSD-EDAMRCKVVALIKADNIDDALSTIQSSQKF-T---------------- 84 (666)
Q Consensus 23 l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~-~---------------- 84 (666)
+-..+..+++..-|.-|+.+.+.- ..++.. ...+...|.-++..|+|++|...|-+.... .
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKN 415 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHH
Confidence 345677778888899999887652 333333 456667788899999999999988887221 1
Q ss_pred ---------------hhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 005990 85 ---------------FDFNYLKAYCLYRQNRLDEALESLKIQENNPAT--MLLKSQILYRSGEMDACVEFYQKLQKSKID 147 (666)
Q Consensus 85 ---------------~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 147 (666)
.+-...+.+||.++++.+.-.+.++..+..... ....-.+++..+-+++|.-+-.+.-.
T Consensus 416 Lt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~---- 491 (933)
T KOG2114|consen 416 LTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK---- 491 (933)
T ss_pred HHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc----
Confidence 111123346677777777666666665421111 11222333444444444333322210
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHhhhcCCC-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHh
Q 005990 148 SLEINFVAGLISAGRASEVQKTLDSLRVKATS-SFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIE 226 (666)
Q Consensus 148 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 226 (666)
.+..+-.++...+++++|+.++..+ .++ ........|..++.. ..++-...+-+.+........ +....+
T Consensus 492 -he~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~~~--~~~~s~-- 562 (933)
T KOG2114|consen 492 -HEWVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQGK--GKSLSN-- 562 (933)
T ss_pred -CHHHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCCCC--Cchhhc--
Confidence 1122233345578888888887665 222 233344455555443 344444444443333221100 000000
Q ss_pred hhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHh
Q 005990 227 IELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADES 265 (666)
Q Consensus 227 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~ 265 (666)
+...+-+++.-.+++..-...++...+..|+.+.
T Consensus 563 -----~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 563 -----IPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred -----CccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 0012223334455666666666666666665543
No 351
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.17 E-value=27 Score=38.32 Aligned_cols=421 Identities=13% Similarity=-0.011 Sum_probs=211.8
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHhhhccchhhhHHHHHHHH---HhCCHHHHH
Q 005990 32 ERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDD---ALSTIQSSQKFTFDFNYLKAYCLY---RQNRLDEAL 105 (666)
Q Consensus 32 ~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~a~~~~---~~g~~~~A~ 105 (666)
..+.-++-+..++.-+.+++.+...+..+..++...|++++ |...+..+..+.+.+|.+...-.. ..+...++.
T Consensus 91 ~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 91 NEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred ccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHH
Confidence 34445556667777778888888888888889999998765 555566666667777775553322 235667777
Q ss_pred HHHHhc---CCChhHHHHHHHHH-------HHcCCHHHHHHHHHHHHhhCCChhH---------HHHHHHHHHcCChhHH
Q 005990 106 ESLKIQ---ENNPATMLLKSQIL-------YRSGEMDACVEFYQKLQKSKIDSLE---------INFVAGLISAGRASEV 166 (666)
Q Consensus 106 ~~l~~~---~~~~~~~~~la~~~-------~~~g~~~~A~~~~~~~l~~~p~~~~---------~~l~~~~~~~g~~~~A 166 (666)
..+++. -..+.+|...++.. ...++++....+|.+++..-..... ..+-..|...-..++.
T Consensus 171 ~~~ekal~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv 250 (881)
T KOG0128|consen 171 ELFEKALGDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQV 250 (881)
T ss_pred HHHHHHhcccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHH
Confidence 777762 22444444444433 4557788888999998864222211 2222233333333556
Q ss_pred HHHHHHhhhcCCChHHH----HHHHH---HHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHH
Q 005990 167 QKTLDSLRVKATSSFEL----AYNTA---CSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYV 239 (666)
Q Consensus 167 ~~~~~~~~~~~~~~~~~----~~~la---~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 239 (666)
+.+|...+... -+.++ |+-.. .......+++.|..-+.+.+......+.. ++.....|..+...
T Consensus 251 ~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~--------~~~~~q~~~~yidf 321 (881)
T KOG0128|consen 251 IALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK--------EPIKDQEWMSYIDF 321 (881)
T ss_pred HHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHH
Confidence 66666655543 11111 11111 11223445555555555444433221110 01122345555555
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHH
Q 005990 240 QQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAI 319 (666)
Q Consensus 240 ~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~ 319 (666)
....|+.---...++++....+.+...+......+-.--+..+.. .... ........+...
T Consensus 322 e~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~--~~~~-----------------~ra~R~cp~tgd 382 (881)
T KOG0128|consen 322 EKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRG--VSVH-----------------PRAVRSCPWTGD 382 (881)
T ss_pred HHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhccccccccccc--cccc-----------------chhhcCCchHHH
Confidence 667788877778888888776666544432211110000000000 0000 000000011111
Q ss_pred HHHHHHHHHHcCChH--HHHHHHHhccccCCCCchHHHHHHHH------------H-HhhCChhHHHHHHHHHHhhCCCh
Q 005990 320 YANRVLLLLHANKMD--QARELVAALPDMFPDSVMPLLLQAAV------------L-VRENKAGKAEELLGQFAEKLPDK 384 (666)
Q Consensus 320 ~~~~a~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~a~~------------~-~~~g~~~~A~~~l~~~~~~~p~~ 384 (666)
....+.+.+..++-+ .-...+...+.. ....++..... | .....+..|..+|.......-+.
T Consensus 383 L~~rallAleR~re~~~vI~~~l~~~ls~---~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt 459 (881)
T KOG0128|consen 383 LWKRALLALERNREEITVIVQNLEKDLSM---TVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDT 459 (881)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHHH---HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 111222222222111 000111111100 00000000000 0 11234566666666665543332
Q ss_pred hHHHHHHHHHHHH-HcCChhHHHHHHhcCcCCCC--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHH
Q 005990 385 SKIILLARAQVAA-AANHPFIAAESLAKIPDIQH--MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSV 461 (666)
Q Consensus 385 ~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 461 (666)
....+...|++++ .+++.+.|..+......... ..+.|...+.+-...|+...+..+++.++.... .......
T Consensus 460 ~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~----~~~~~~e 535 (881)
T KOG0128|consen 460 RTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVV----DPEDALE 535 (881)
T ss_pred HHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCc----CchhHHH
Confidence 3345566666665 45889999999998877665 333777888888888999999998888865421 1111223
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHH
Q 005990 462 IMQEAASFKLRHGREEDASHLFEELV 487 (666)
Q Consensus 462 ~~~~l~~~~~~~g~~~~A~~~~~~~l 487 (666)
++..+-.+....|.++....+-++.+
T Consensus 536 v~~~~~r~Ere~gtl~~~~~~~~~~~ 561 (881)
T KOG0128|consen 536 VLEFFRRFEREYGTLESFDLCPEKVL 561 (881)
T ss_pred HHHHHHHHHhccccHHHHhhhHHhhc
Confidence 44444555666777776665555443
No 352
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.98 E-value=0.48 Score=42.73 Aligned_cols=72 Identities=18% Similarity=0.018 Sum_probs=61.3
Q ss_pred HHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCC
Q 005990 29 RHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNR 100 (666)
Q Consensus 29 ~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~ 100 (666)
.....+|++.|.+.+++++...|.....|+.+|....+.|+++.|...|++..++++.-....+.-+.-+|+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~ 75 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAVLGR 75 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHhhcC
Confidence 456789999999999999999999999999999999999999999999999988887666555544444443
No 353
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.89 E-value=35 Score=39.15 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=26.7
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCc
Q 005990 355 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP 413 (666)
Q Consensus 355 ~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 413 (666)
..++.-+...+++-+|-+++...+.. |. ....+++....|++|+.+...+-
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd-~~-------~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD-PE-------EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC-HH-------HHHHHHhhHhHHHHHHHHHHhcc
Confidence 34445555666666666666555432 11 11224455556666666665543
No 354
>PF12854 PPR_1: PPR repeat
Probab=90.82 E-value=0.6 Score=28.23 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 005990 53 DEDAMRCKVVALIKADNIDDALSTIQSS 80 (666)
Q Consensus 53 ~~~a~~~~~~~~~~~g~~~~A~~~~~~~ 80 (666)
|...|..+...|.+.|++++|+++|+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 5678888999999999999999998875
No 355
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.78 E-value=23 Score=36.84 Aligned_cols=79 Identities=11% Similarity=0.014 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCC--ChHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005990 133 ACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKAT--SSFELAYNTACSLAEMNKYTEAEQLLLTAR 208 (666)
Q Consensus 133 ~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 208 (666)
.+.+.+.......|.+.. ...+..+.-.|+.+.|+..++..+...- -..-.++.+|.++..+.+|..|-..+....
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~ 330 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR 330 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 334444444445666555 6777777777777777777766654110 012356788889999999999999888887
Q ss_pred Hhh
Q 005990 209 RIG 211 (666)
Q Consensus 209 ~~~ 211 (666)
...
T Consensus 331 des 333 (546)
T KOG3783|consen 331 DES 333 (546)
T ss_pred hhh
Confidence 766
No 356
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.48 E-value=0.5 Score=26.50 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 005990 56 AMRCKVVALIKADNIDDALSTIQ 78 (666)
Q Consensus 56 a~~~~~~~~~~~g~~~~A~~~~~ 78 (666)
+.+.++.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45556666666666666666554
No 357
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.44 E-value=1.4 Score=42.04 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSS 80 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~ 80 (666)
..+...+..+...|+++.++..+++.+..+|-+..+|..+..+|.+.|+...|+..|+++
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 344555666667777777777777777777777777777777777777777777777776
No 358
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=90.31 E-value=19 Score=35.15 Aligned_cols=172 Identities=19% Similarity=0.103 Sum_probs=94.3
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCH
Q 005990 22 DLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRL 101 (666)
Q Consensus 22 ~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 101 (666)
...........++++.+.++.+++.+..+|-=.+.++..+.++.++| ++.+...+...... .+-++=.+
T Consensus 101 d~~~~~~~~~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~----------fL~RlP~L 169 (301)
T TIGR03362 101 DRVADYQELLAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAA----------FLERLPGL 169 (301)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHH----------HHHhCcCh
Confidence 45555555568889999999999999998877899999999999999 56666555543100 00000000
Q ss_pred HHHHHHHHh-cCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--ChhH--HHHHHHHHHcCChhHHHHHHHHhhh
Q 005990 102 DEALESLKI-QEN-NPATMLLKSQILYRSGEMDACVEFYQKLQKSKI--DSLE--INFVAGLISAGRASEVQKTLDSLRV 175 (666)
Q Consensus 102 ~~A~~~l~~-~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 175 (666)
+. + .|.. .|- +..+...+...-...+.-..+ .....+ ++.. ..-+..+...+..+.|+..++....
T Consensus 170 ~~-L-~F~DGtPFad~~T~~WL~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~ 241 (301)
T TIGR03362 170 LE-L-KFSDGTPFADDETRAWLAQHATRSNAASVA------PVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLA 241 (301)
T ss_pred hh-c-ccCCCCCCCCHHHHHHHHhccccccccccc------ccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 00 0 0000 000 222322222211000000000 000000 0011 2335556667778888887776433
Q ss_pred cC---CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhh
Q 005990 176 KA---TSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQ 212 (666)
Q Consensus 176 ~~---~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 212 (666)
.. .+.+-..+.++.++...|.++-|..+|+...+...
T Consensus 242 ~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~ 281 (301)
T TIGR03362 242 QAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQIQ 281 (301)
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 22 23455566778888888888888888888877653
No 359
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=90.09 E-value=0.93 Score=38.29 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNI 70 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~ 70 (666)
..+.++..+..++..|+|.-|..+++.++..+|+|.++...++.+|.++|.-
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 4677889999999999999999999999999999999999999998877643
No 360
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.00 E-value=14 Score=38.66 Aligned_cols=93 Identities=16% Similarity=-0.048 Sum_probs=63.6
Q ss_pred HHHHHhhCChhHHHHHHHHHHhhCCC-hhHHHHHHHHHHHHHcCChhHHHHHHhcCcC-----CCCChhHHHHHHHHHHH
Q 005990 358 AAVLVRENKAGKAEELLGQFAEKLPD-KSKIILLARAQVAAAANHPFIAAESLAKIPD-----IQHMPATVATLVALKER 431 (666)
Q Consensus 358 a~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~-----~~~~~~~~~~l~~~~~~ 431 (666)
...+.+.|-+..|.+++.-+++.+|. ++..+.+++-...++..+|.=-+++++.... .-|+-.+-..++..|..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 34556788899999999999999998 6664555444445677777766666665522 22344444566777776
Q ss_pred cCC---hhHHHHHHHHHHHHHH
Q 005990 432 AGD---IDGAAAVLDSAIKWWL 450 (666)
Q Consensus 432 ~g~---~~~A~~~l~~a~~~~~ 450 (666)
... ...|...+.+|+.++|
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred cCChhhHHHHHHHHHHHHHhCc
Confidence 665 5678888888888775
No 361
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.00 E-value=1.8 Score=42.86 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=73.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--------CC-----hhH-------HHHHHHHHHcCChhHHHHHHHHhhhcCC
Q 005990 119 LLKSQILYRSGEMDACVEFYQKLQKSK--------ID-----SLE-------INFVAGLISAGRASEVQKTLDSLRVKAT 178 (666)
Q Consensus 119 ~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~-----~~~-------~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 178 (666)
..-|..+|++++|..|+.-|..+++.- |. +.. ..+..+|..+++.+-|+....+.+..+|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 444677888999888888888887631 11 111 6788899999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 005990 179 SSFELAYNTACSLAEMNKYTEAEQLLLTARRI 210 (666)
Q Consensus 179 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 210 (666)
..+.-+...|.++..+.+|.+|-..+--+.-+
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987766554433
No 362
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.50 E-value=6 Score=32.73 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHH
Q 005990 179 SSFELAYNTACSLAEMNK---YTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTD 255 (666)
Q Consensus 179 ~~~~~~~~la~~~~~~g~---~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~ 255 (666)
-+.+..|++|.++....+ ..+.+.+|+..+.... |++ --...+.||..+++.++|+.++.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~---------~~~----rRe~lyYLAvg~yRlkeY~~s~~yvd~ 96 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAH---------PER----RRECLYYLAVGHYRLKEYSKSLRYVDA 96 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcC---------ccc----chhhhhhhHHHHHHHhhHHHHHHHHHH
Confidence 356688899999888765 4567778887776111 111 114678899999999999999999999
Q ss_pred HHhhCCCCHh
Q 005990 256 IIKRNLADES 265 (666)
Q Consensus 256 ~l~~~~~~~~ 265 (666)
+++..|++..
T Consensus 97 ll~~e~~n~Q 106 (149)
T KOG3364|consen 97 LLETEPNNRQ 106 (149)
T ss_pred HHhhCCCcHH
Confidence 9999998863
No 363
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.43 E-value=0.61 Score=42.07 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=57.0
Q ss_pred HHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHH
Q 005990 325 LLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL 389 (666)
Q Consensus 325 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~ 389 (666)
......++.+.|.+++.+++..-|+....|+.++....+.|+++.|.+.|++.++.+|++....-
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa 67 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAA 67 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchh
Confidence 34567789999999999999999999999999999999999999999999999999998654333
No 364
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.29 E-value=3.7 Score=41.48 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhh--------cCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRV--------KATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIG 211 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 211 (666)
+.|.++++-.|+|..|++.++.+.- ..+....++|.+|.+|+.+++|.+|+..|...+-.-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi 194 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYI 194 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888899888888766522 123456689999999999999999999998876543
No 365
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=88.97 E-value=1.6 Score=44.46 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=70.5
Q ss_pred cCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHH---cCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHH
Q 005990 128 SGEMDACVEFYQKLQKSKIDSLE--INFVAGLIS---AGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQ 202 (666)
Q Consensus 128 ~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 202 (666)
.+....|+..|.+++...|+... .|.+++++. .|+.-.|+.-...++..+|....++|.++.++...+++.+|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 34466788899999888888777 777887776 4566667777778889999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 005990 203 LLLTARRIGQ 212 (666)
Q Consensus 203 ~l~~a~~~~~ 212 (666)
+...+....|
T Consensus 467 ~~~alq~~~P 476 (758)
T KOG1310|consen 467 CHWALQMSFP 476 (758)
T ss_pred hHHHHhhcCc
Confidence 9888777774
No 366
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=88.93 E-value=24 Score=34.36 Aligned_cols=129 Identities=14% Similarity=0.135 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCChhH----------HHHHHHHHHcCChhHHHHHHHHhhhc---CC--ChH
Q 005990 119 LLKSQILYRSGEMDACVEFYQKLQKS--KIDSLE----------INFVAGLISAGRASEVQKTLDSLRVK---AT--SSF 181 (666)
Q Consensus 119 ~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~----------~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~ 181 (666)
...++......++++++.+|..++.. .+.+.+ .+++..|...|+.++-...+...... -+ ...
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 45566666667778888888887763 222211 77888888888877766555443211 00 011
Q ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhh-hhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005990 182 ELAYNTACSL-AEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIE-LAPIAVQLAYVQQLLGNTQEAFGAYTDII 257 (666)
Q Consensus 182 ~~~~~la~~~-~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~eA~~~~~~~l 257 (666)
.+...+-..+ ...+.+..-+.++..+++.... +...- -...-..+..+|...++|.+|+.+...++
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~----------ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~ 155 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKR----------EKRTFLRQSLEARLIRLYNDTKRYTEALALINDLL 155 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHH----------HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1111111111 1112233334444444443311 00000 01233567788888888888888877665
No 367
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.93 E-value=2.2 Score=38.20 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-----ChhHHHHHHHHHHHcCChhHH
Q 005990 367 AGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-----MPATVATLVALKERAGDIDGA 438 (666)
Q Consensus 367 ~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A 438 (666)
-++|...|-++-...--+...+.+.+|..|. .-+.++|+.+|-+++++.. +|+++..|+.+|...|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3455555544332222123446666665554 5667777777777665432 677777788888887777765
No 368
>PF12854 PPR_1: PPR repeat
Probab=88.91 E-value=0.88 Score=27.50 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=15.4
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHH
Q 005990 417 HMPATVATLVALKERAGDIDGAAAVLDS 444 (666)
Q Consensus 417 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 444 (666)
|+...+..++..|.+.|+.++|.++|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3444455555555555665555555543
No 369
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.85 E-value=27 Score=36.61 Aligned_cols=168 Identities=14% Similarity=0.081 Sum_probs=101.8
Q ss_pred hccHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc-----cchhhhHHHHHHH
Q 005990 33 RSEFEQAVKVADQVLST------------NPSDEDAMRCKVVALIKADNIDDALSTIQSSQK-----FTFDFNYLKAYCL 95 (666)
Q Consensus 33 ~~~~~~A~~~~~~~l~~------------~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~a~~~ 95 (666)
...|++|...|.-+... +|-+.+.+..++.+...+|+.+-|..+++++.= +.+.+.+..+.|-
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34566777766655443 566788999999999999999999999988710 0111111111110
Q ss_pred HHhCCHHHHHHHHHhcCCChh---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-hhH--HHHHHHHH-HcCChhHHHH
Q 005990 96 YRQNRLDEALESLKIQENNPA---TMLLKSQILYRSGEMDACVEFYQKLQKSKID-SLE--INFVAGLI-SAGRASEVQK 168 (666)
Q Consensus 96 ~~~g~~~~A~~~l~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~--~~l~~~~~-~~g~~~~A~~ 168 (666)
.-- ..+.+.. +++..-+.+.+.|-+..|.++.+-+++.+|. ++- ..+...|+ ...+|.=-+.
T Consensus 331 L~y-----------~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~ 399 (665)
T KOG2422|consen 331 LPY-----------IYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIE 399 (665)
T ss_pred Ccc-----------cchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHH
Confidence 000 0122222 3344456667889999999999999999887 443 33344443 2455665666
Q ss_pred HHHHhhh-----cCCChHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhh
Q 005990 169 TLDSLRV-----KATSSFELAYNTACSLAEMNK---YTEAEQLLLTARRIGQ 212 (666)
Q Consensus 169 ~~~~~~~-----~~~~~~~~~~~la~~~~~~g~---~~~A~~~l~~a~~~~~ 212 (666)
.++.... .-|+ +-.-..+|..|..... -..|+..+.+|+...|
T Consensus 400 ~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 400 LSNEPENMNKLSQLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHhhccHhhcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 6655432 2232 3344455666666555 4668888999988885
No 370
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.83 E-value=10 Score=39.68 Aligned_cols=154 Identities=18% Similarity=0.158 Sum_probs=98.9
Q ss_pred HHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHH
Q 005990 29 RHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESL 108 (666)
Q Consensus 29 ~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l 108 (666)
.+.-.++++.|..++-.+ | .+.....+..+-.+|-.++|+++-. +++..|++ ..++|+++.|.++.
T Consensus 595 t~vmrrd~~~a~~vLp~I----~--k~~rt~va~Fle~~g~~e~AL~~s~-----D~d~rFel---al~lgrl~iA~~la 660 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTI----P--KEIRTKVAHFLESQGMKEQALELST-----DPDQRFEL---ALKLGRLDIAFDLA 660 (794)
T ss_pred HHhhhccccccccccccC----c--hhhhhhHHhHhhhccchHhhhhcCC-----Chhhhhhh---hhhcCcHHHHHHHH
Confidence 345567787776644332 3 3455667778888899988887533 34455554 46789999999887
Q ss_pred HhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHH
Q 005990 109 KIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTA 188 (666)
Q Consensus 109 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 188 (666)
.+. ++..-|..||.+....|++..|.++|.++-.. ..|..++...|+-+....+-..+.+.. .+|+|
T Consensus 661 ~e~-~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~------~~LlLl~t~~g~~~~l~~la~~~~~~g------~~N~A 727 (794)
T KOG0276|consen 661 VEA-NSEVKWRQLGDAALSAGELPLASECFLRARDL------GSLLLLYTSSGNAEGLAVLASLAKKQG------KNNLA 727 (794)
T ss_pred Hhh-cchHHHHHHHHHHhhcccchhHHHHHHhhcch------hhhhhhhhhcCChhHHHHHHHHHHhhc------ccchH
Confidence 654 36678899999999999999999999987332 223333444555432222222222221 22223
Q ss_pred -HHHHHhcCHHHHHHHHHHHHH
Q 005990 189 -CSLAEMNKYTEAEQLLLTARR 209 (666)
Q Consensus 189 -~~~~~~g~~~~A~~~l~~a~~ 209 (666)
.+|+..|+++++++++...-.
T Consensus 728 F~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 728 FLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred HHHHHHcCCHHHHHHHHHhcCc
Confidence 367889999999888876533
No 371
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=88.57 E-value=2.1 Score=40.53 Aligned_cols=63 Identities=21% Similarity=0.170 Sum_probs=44.9
Q ss_pred HHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-Chh
Q 005990 357 QAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPA 420 (666)
Q Consensus 357 ~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~ 420 (666)
.|.-..+.|+.++|..+|+.++...|+++. ++...++.....+++-+|-.+|-+++.+.| +..
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~-~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQ-ILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHH-HHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 344455677777777777777777777655 777777777777777777777777777777 443
No 372
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=88.38 E-value=0.9 Score=42.95 Aligned_cols=82 Identities=11% Similarity=0.037 Sum_probs=65.0
Q ss_pred hccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHH-HHHHHHHcCChhHHHHHHhcCcCCCC-Ch
Q 005990 342 ALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLA-RAQVAAAANHPFIAAESLAKIPDIQH-MP 419 (666)
Q Consensus 342 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~-la~~~~~~g~~~~A~~~l~~~~~~~~-~~ 419 (666)
+....+++++..|...+....+.|.+.+--.+|.+++..+|.+.. +|.. .+.-+...++++.+..++.+.+..++ +|
T Consensus 98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvd-lWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVD-LWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCce-eeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 334457888888888877777788888889999999999998765 4444 55667788999999999999999988 88
Q ss_pred hHHHH
Q 005990 420 ATVAT 424 (666)
Q Consensus 420 ~~~~~ 424 (666)
.+|..
T Consensus 177 ~iw~e 181 (435)
T COG5191 177 RIWIE 181 (435)
T ss_pred hHHHH
Confidence 77743
No 373
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=87.98 E-value=4 Score=46.77 Aligned_cols=179 Identities=13% Similarity=0.058 Sum_probs=115.3
Q ss_pred cHHHHHHHHHHHhhhccHHHHHH------HHHH-HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHH
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVK------VADQ-VLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLK 91 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~------~~~~-~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 91 (666)
.....+..+...+..|.+.+|.+ +++. +..++|.....+..++..+.++|++++|+..-.++.-....
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR----- 1005 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISER----- 1005 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeech-----
Confidence 34566777878888888888877 5553 33447777888888999999999999988887776211100
Q ss_pred HHHHHHhCCHHHHHHHHHh-cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCChhH-----HHHHHHHHHc
Q 005990 92 AYCLYRQNRLDEALESLKI-QENNPATMLLKSQILYRSGEMDACVEFYQKLQK-----SKIDSLE-----INFVAGLISA 160 (666)
Q Consensus 92 a~~~~~~g~~~~A~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~-----~~l~~~~~~~ 160 (666)
++.. .++....+..++...+..++...|+..+.++.. ..|+.+. .++..++...
T Consensus 1006 ---------------~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v 1070 (1236)
T KOG1839|consen 1006 ---------------VLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGV 1070 (1236)
T ss_pred ---------------hccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhH
Confidence 0000 122334445555555666666666666666543 1233322 6666666667
Q ss_pred CChhHHHHHHHHhhhcC--------CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccC
Q 005990 161 GRASEVQKTLDSLRVKA--------TSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTD 217 (666)
Q Consensus 161 g~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~ 217 (666)
++++.|+.+++.+.... -.+...+..++..+..++++..|+........+....++.
T Consensus 1071 ~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~ 1135 (1236)
T KOG1839|consen 1071 EEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGP 1135 (1236)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCC
Confidence 77788888777776532 1244556677888888888888888888888877665543
No 374
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.86 E-value=1.8 Score=26.98 Aligned_cols=32 Identities=16% Similarity=0.013 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 182 ELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 182 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
+++..+|.+.+..++|++|+.-|++++++...
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999998754
No 375
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.84 E-value=15 Score=34.75 Aligned_cols=120 Identities=16% Similarity=0.195 Sum_probs=63.8
Q ss_pred HHHH-HHHHHhhhccHHHHHHHHHHHHhcCCCC----------HHHHHHH----HHHHHHcCCHHHHHHHHHhhhccchh
Q 005990 22 DLFT-SLNRHIERSEFEQAVKVADQVLSTNPSD----------EDAMRCK----VVALIKADNIDDALSTIQSSQKFTFD 86 (666)
Q Consensus 22 ~l~~-~~~~~~~~~~~~~A~~~~~~~l~~~p~~----------~~a~~~~----~~~~~~~g~~~~A~~~~~~~~~~~~~ 86 (666)
.++. .+..++-..||..|+..|++.++.--++ .+.-..+ +.++..+|+|.+++...-+.-.
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq---- 111 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQ---- 111 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhc----
Confidence 4444 4555678889999999999998753111 1111111 2356666777666655444311
Q ss_pred hhHHHHHHHHHhCCHHHHHHHHHhcCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH---------HHHHH
Q 005990 87 FNYLKAYCLYRQNRLDEALESLKIQEN--NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE---------INFVA 155 (666)
Q Consensus 87 ~~~~~a~~~~~~g~~~~A~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---------~~l~~ 155 (666)
.|+ -+.+..+-.-+|.+.+++....++-...+.. |+|.. ..+-.
T Consensus 112 ------------------------~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 112 ------------------------VPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred ------------------------CcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 111 2334444444555555555555555555432 22211 44444
Q ss_pred HHHHcCChhHHHHHH
Q 005990 156 GLISAGRASEVQKTL 170 (666)
Q Consensus 156 ~~~~~g~~~~A~~~~ 170 (666)
++.-.|.+++|.+..
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 555567777776655
No 376
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=87.45 E-value=27 Score=33.35 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=42.8
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHH-----------HHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHH
Q 005990 418 MPATVATLVALKERAGDIDGAAAVLDS-----------AIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEEL 486 (666)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~~~A~~~l~~-----------a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 486 (666)
+|.+...+|..|.+.|++.+|..+|-. ++..|... +...+...++.+...-|+..++...|...+...
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~-~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK-GYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 667777777777777777776665531 12222221 122233445666677788999999999988777
Q ss_pred HHh
Q 005990 487 VKT 489 (666)
Q Consensus 487 l~~ 489 (666)
.+.
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
No 377
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.37 E-value=2 Score=26.41 Aligned_cols=31 Identities=23% Similarity=0.116 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCChHHHHHH--HHHHHhhCCC
Q 005990 232 IAVQLAYVQQLLGNTQEAFGA--YTDIIKRNLA 262 (666)
Q Consensus 232 ~~~~la~~~~~~g~~~eA~~~--~~~~l~~~~~ 262 (666)
.++.+|..+..+|++++|+.+ |.-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 567889999999999999999 4466655553
No 378
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.18 E-value=2.5 Score=40.27 Aligned_cols=67 Identities=13% Similarity=0.052 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 005990 387 IILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAM 453 (666)
Q Consensus 387 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~ 453 (666)
.++..++..+...|+++.+++.+++++..+| +...+..+...|...|+...|+..|+++-.......
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edl 221 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEEL 221 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhc
Confidence 3677888899999999999999999999999 778889999999999999999999998766543333
No 379
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=87.08 E-value=12 Score=38.03 Aligned_cols=60 Identities=13% Similarity=0.272 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHH--HHH--HHHHHHHHcCCHHHHHHHHHhhh
Q 005990 22 DLFTSLNRHIERSEFEQAVKVADQVLSTNPSDED--AMR--CKVVALIKADNIDDALSTIQSSQ 81 (666)
Q Consensus 22 ~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--a~~--~~~~~~~~~g~~~~A~~~~~~~~ 81 (666)
-.+.++..++..++|..|..+++.+...-|.+.. .+. +.|.-+...-+|.+|.+.++...
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4467788889999999999999999986444433 333 34455666778899999999874
No 380
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=87.06 E-value=3.1 Score=42.05 Aligned_cols=68 Identities=10% Similarity=0.129 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005990 183 LAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDII 257 (666)
Q Consensus 183 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l 257 (666)
.+..+.++++-+|||..|++.++-. +++...+-. .++ +-....++.+|.+|..+++|.+|++.|..++
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~-~V~-----~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYT-KVP-----ACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-Ccccchhhc-cCc-----chheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778899999999999998654 222211100 111 2223688999999999999999999999887
No 381
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.48 E-value=33 Score=37.16 Aligned_cols=179 Identities=15% Similarity=0.167 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccc--------hhhhHHHHHHHHH---hCCHHHHHHHHHh-----cCCChh
Q 005990 53 DEDAMRCKVVALIKADNIDDALSTIQSSQKFT--------FDFNYLKAYCLYR---QNRLDEALESLKI-----QENNPA 116 (666)
Q Consensus 53 ~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~a~~~~~---~g~~~~A~~~l~~-----~~~~~~ 116 (666)
+++....+...|..-.+|+.-+++.+....+. ..+.|..+.++-+ -|+-+.|+...-. .+-.+.
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 36677777778888889998888888774442 2344455566655 3556667665433 222455
Q ss_pred HHHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCChhH-HHHHHHHHHcCCh-hHHHHHHHHhhhcCCChHHHHH
Q 005990 117 TMLLKSQILY---------RSGEMDACVEFYQKLQKSKIDSLE-INFVAGLISAGRA-SEVQKTLDSLRVKATSSFELAY 185 (666)
Q Consensus 117 ~~~~la~~~~---------~~g~~~~A~~~~~~~l~~~p~~~~-~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~ 185 (666)
.+.+.|.+|- ..+..+.|+.+|+++.+..|.... +|++..+...|+. +...+ + -.+-.
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~E-l----------q~Igm 348 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLE-L----------QQIGM 348 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHH-H----------HHHHH
Confidence 6666666653 345677899999999988888777 8888888776642 22211 1 11233
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHh
Q 005990 186 NTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADES 265 (666)
Q Consensus 186 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~ 265 (666)
.+++++-+.|..+.-.++++-+.=+. +-...+++.+|+..-+.+.++.|...-
T Consensus 349 kLn~LlgrKG~leklq~YWdV~~y~~---------------------------asVLAnd~~kaiqAae~mfKLk~P~WY 401 (1226)
T KOG4279|consen 349 KLNSLLGRKGALEKLQEYWDVATYFE---------------------------ASVLANDYQKAIQAAEMMFKLKPPVWY 401 (1226)
T ss_pred HHHHHhhccchHHHHHHHHhHHHhhh---------------------------hhhhccCHHHHHHHHHHHhccCCceeh
Confidence 44555555565554444433322111 112346777788887888877775544
Q ss_pred HHHH
Q 005990 266 SFAV 269 (666)
Q Consensus 266 ~~~~ 269 (666)
+..+
T Consensus 402 LkS~ 405 (1226)
T KOG4279|consen 402 LKST 405 (1226)
T ss_pred HHHH
Confidence 3333
No 382
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=86.40 E-value=9.3 Score=30.92 Aligned_cols=75 Identities=9% Similarity=-0.098 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005990 183 LAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDII 257 (666)
Q Consensus 183 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l 257 (666)
-+.++|...+..+++-.++-.|++|+.+..+.......+.+|.-.-......+||..+..+|+.+=.+++++-+-
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 456788999999999999999999999886543222222333212222456799999999999999999987553
No 383
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.38 E-value=44 Score=34.60 Aligned_cols=56 Identities=7% Similarity=-0.067 Sum_probs=31.7
Q ss_pred HHHHcCChHHHHHHHHhccccCCCCchHH--------------------HHHHHHHHhhCChhHHHHHHHHHHhhC
Q 005990 326 LLLHANKMDQARELVAALPDMFPDSVMPL--------------------LLQAAVLVRENKAGKAEELLGQFAEKL 381 (666)
Q Consensus 326 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~--------------------~~~a~~~~~~g~~~~A~~~l~~~~~~~ 381 (666)
-|....++++|++++..+++.+..+..+. +....+-..-.++-+++.-|+..+..+
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~ 289 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFD 289 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheec
Confidence 35556677777777776665544443222 222222222456777888888777654
No 384
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=85.78 E-value=12 Score=37.49 Aligned_cols=88 Identities=15% Similarity=-0.000 Sum_probs=52.5
Q ss_pred HHHHHhhCChhHHHHHHHHHHhhCC-----------C--hh----HHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-Ch
Q 005990 358 AAVLVRENKAGKAEELLGQFAEKLP-----------D--KS----KIILLARAQVAAAANHPFIAAESLAKIPDIQH-MP 419 (666)
Q Consensus 358 a~~~~~~g~~~~A~~~l~~~~~~~p-----------~--~~----~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~ 419 (666)
|..++++++|..|.--|..+++... . +. ..+-..++.||+..++.+-|+...-+.+-++| .+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4455556666655555555544321 1 00 11334566788888888888888777777777 44
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHH
Q 005990 420 ATVATLVALKERAGDIDGAAAVLDSA 445 (666)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~l~~a 445 (666)
.-...-+.++..+.+|.+|...+.-+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777777777776655443
No 385
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=85.78 E-value=6.8 Score=36.92 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhH
Q 005990 319 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK 386 (666)
Q Consensus 319 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 386 (666)
+..|+-..+...++++.|..+.+..+..+|+++.-+.-.|.+|.+.|.+.-|+..++.+++..|+.+.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 44555566788888888888888888888888888888888888888888888888888888888554
No 386
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=85.77 E-value=6.2 Score=37.47 Aligned_cols=83 Identities=20% Similarity=0.084 Sum_probs=56.4
Q ss_pred HHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHH
Q 005990 404 IAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLF 483 (666)
Q Consensus 404 ~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 483 (666)
.|.+.|.+.....-...+...+|..|...|++++|..+|+.+...++...- ..-...++..+..++...|+.+..+.+.
T Consensus 163 ~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW-~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 163 KAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGW-WSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445555544332224445678899999999999999999999777764432 2233446667788888888888887766
Q ss_pred HHHH
Q 005990 484 EELV 487 (666)
Q Consensus 484 ~~~l 487 (666)
=+++
T Consensus 242 leLl 245 (247)
T PF11817_consen 242 LELL 245 (247)
T ss_pred HHHh
Confidence 5554
No 387
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=85.77 E-value=2.9 Score=25.69 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHhhCC
Q 005990 117 TMLLKSQILYRSGEMDACVEF--YQKLQKSKI 146 (666)
Q Consensus 117 ~~~~la~~~~~~g~~~~A~~~--~~~~l~~~p 146 (666)
.+..+|-.++..|++++|+.+ |+-+...++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 456677777778888888877 335544443
No 388
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.74 E-value=14 Score=38.71 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=14.7
Q ss_pred HHHHHcCChHHHHHHHHhc
Q 005990 325 LLLLHANKMDQARELVAAL 343 (666)
Q Consensus 325 ~~~~~~~~~~~A~~~~~~~ 343 (666)
.+++..|+++++.+++...
T Consensus 729 ~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHcCCHHHHHHHHHhc
Confidence 4577889999988887654
No 389
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=85.40 E-value=67 Score=35.83 Aligned_cols=111 Identities=15% Similarity=0.091 Sum_probs=75.5
Q ss_pred HHHHHHHcCChhHHHHHHhcCcCCCCChhHHHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 005990 392 RAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGD---IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS 468 (666)
Q Consensus 392 la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~ 468 (666)
+-+.|...|+++.|..++.+.. ..|.+.....|+.++.+.+. ..++....+++....+....... .+...+.
T Consensus 713 LL~sy~~~g~~erA~glwnK~Q-V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~----~~~~~a~ 787 (1088)
T KOG4318|consen 713 LLQSYLEEGRIERASGLWNKDQ-VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTC----YYEGYAF 787 (1088)
T ss_pred HHHHHHhhhHHHHHHhHHhhCc-CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchH----hhhhhHH
Confidence 6778999999999999999976 66788888889988876653 44555555565554433322111 3333345
Q ss_pred HHHhCCChhhHHHHHHHHHHhcCC--hHHHHHHHHhhccCC
Q 005990 469 FKLRHGREEDASHLFEELVKTHGS--IEALVGLVTTSAHVD 507 (666)
Q Consensus 469 ~~~~~g~~~~A~~~~~~~l~~~p~--~~~l~~l~~~~~~~d 507 (666)
+..+..+.+.|.++|+++-+..+- .+.+.+++.++...|
T Consensus 788 ~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~nd 828 (1088)
T KOG4318|consen 788 FATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKND 828 (1088)
T ss_pred HHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhcC
Confidence 555666666899999999887754 555666666666556
No 390
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.38 E-value=63 Score=35.50 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=14.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHH
Q 005990 151 INFVAGLISAGRASEVQKTLDS 172 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~ 172 (666)
..+..++.-.|+|+.|+..+-+
T Consensus 262 ~~Yf~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 262 LLYFQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp --HHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHh
Confidence 5666777778888888887755
No 391
>PRK12798 chemotaxis protein; Reviewed
Probab=85.25 E-value=45 Score=33.74 Aligned_cols=225 Identities=13% Similarity=0.099 Sum_probs=127.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCC-ChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKAT-SSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIEL 229 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 229 (666)
+.-+.+|.-.|---..+. .++..+. .+.+.-...|..-+-.|+-.+|.+.|...--.. ....+
T Consensus 84 v~Aa~iy~lSGGnP~vlr---~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~-------------l~~~l 147 (421)
T PRK12798 84 VDAALIYLLSGGNPATLR---KLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEY-------------LPAEL 147 (421)
T ss_pred hhHHHhhHhcCCCHHHHH---HHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhh-------------cCchh
Confidence 334445555544444433 2333332 355566666777778899999988876543222 11122
Q ss_pred hhHHHHHHH-HHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhh
Q 005990 230 APIAVQLAY-VQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD 308 (666)
Q Consensus 230 ~~~~~~la~-~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~ 308 (666)
. .++.|.. ......+...|+.+|+.+--..|.-... ..++
T Consensus 148 g-~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvE-----------------EAAL--------------------- 188 (421)
T PRK12798 148 G-AYLALVQGNLMVATDPATALKLLDQARLLAPGTLVE-----------------EAAL--------------------- 188 (421)
T ss_pred h-hHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHH-----------------HHHH---------------------
Confidence 2 3333333 3334567888999998887666643100 0011
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHH---HHHHHhhCChhHHHHHHHHHHhh-CCCh
Q 005990 309 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQ---AAVLVRENKAGKAEELLGQFAEK-LPDK 384 (666)
Q Consensus 309 ~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~---a~~~~~~g~~~~A~~~l~~~~~~-~p~~ 384 (666)
.....+....|+.+++..+..+....|..++.+..+. +..+.+..+-.. ...+..++.. +|+.
T Consensus 189 ------------RRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~~d~~~ 255 (421)
T PRK12798 189 ------------RRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSFMDPER 255 (421)
T ss_pred ------------HHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHhcCchh
Confidence 1114566778888888888888887777766433222 223333332221 2235555544 6666
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCCChhHHHHHHHHHHH-----cCChhHHHHHHH
Q 005990 385 SKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKER-----AGDIDGAAAVLD 443 (666)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~l~ 443 (666)
...+|+.+++.-.-.|+.+-|.-.-+++..+......-...+.+|.. ..+++++...+.
T Consensus 256 q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~ 319 (421)
T PRK12798 256 QRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELS 319 (421)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHh
Confidence 67789999999999999999998888887765422223344444443 334444444443
No 392
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=84.40 E-value=39 Score=32.31 Aligned_cols=89 Identities=13% Similarity=0.180 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHH-HHHHHHHhh---------hccc
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLST-----NPSDEDAMRCKVVALIKADNID-DALSTIQSS---------QKFT 84 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~a~~~~~~~~~~~g~~~-~A~~~~~~~---------~~~~ 84 (666)
++-++.-+..+++.+++.-|..++.-+++. .+.+.+....++.++...+.-+ +-..++.++ ..-+
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gd 89 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGD 89 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCC
Confidence 455666677777777777777666655543 2333444444444444443221 111111111 1113
Q ss_pred hhhhHHHHHHHHHhCCHHHHHHHH
Q 005990 85 FDFNYLKAYCLYRQNRLDEALESL 108 (666)
Q Consensus 85 ~~~~~~~a~~~~~~g~~~~A~~~l 108 (666)
|.++...|..|++.|++.+|...|
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHH
Confidence 455666666666666666555554
No 393
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=84.28 E-value=3.7 Score=42.05 Aligned_cols=111 Identities=15% Similarity=0.102 Sum_probs=72.4
Q ss_pred CCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHH
Q 005990 16 PPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCL 95 (666)
Q Consensus 16 ~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~ 95 (666)
-|.+++-.+..++..+..+.+..|+..|.+++...|.....+-..+.++++.+=...+...+...
T Consensus 370 L~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDc--------------- 434 (758)
T KOG1310|consen 370 LPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDC--------------- 434 (758)
T ss_pred chHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhH---------------
Confidence 34566677777777777778888999999998888887777777776666654322222222221
Q ss_pred HHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH
Q 005990 96 YRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE 150 (666)
Q Consensus 96 ~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 150 (666)
...++-.|....+++.|+.++..++++.+|+.+...+....|.+..
T Consensus 435 ---------h~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 435 ---------HVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred ---------HhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 1111113335567788888888888888888877776666665543
No 394
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.93 E-value=2.3 Score=27.49 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 005990 233 AVQLAYVQQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 233 ~~~la~~~~~~g~~~eA~~~~~~~l~ 258 (666)
.+.||.+|..+|+++.|..+++.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36789999999999999999999995
No 395
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=83.56 E-value=20 Score=28.32 Aligned_cols=83 Identities=13% Similarity=0.113 Sum_probs=50.7
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHH
Q 005990 25 TSLNRHIERSEFEQAVKVADQVLSTNPS-DEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDE 103 (666)
Q Consensus 25 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 103 (666)
..+....-...+++|..+++=. +..+. ...+...+...++.+|+|++|+.. -.....|++.-..+.|-+++|--+.
T Consensus 11 ElAL~atG~HcH~EA~tIa~wL-~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~--~~~~~~pdL~p~~AL~a~klGL~~~ 87 (116)
T PF09477_consen 11 ELALMATGHHCHQEANTIADWL-EQEGEMEEVVALIRLSSLMNRGDYQEALLL--PQCHCYPDLEPWAALCAWKLGLASA 87 (116)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHH-HHTTTTHHHHHHHHHHHHHHTT-HHHHHHH--HTTS--GGGHHHHHHHHHHCT-HHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHhhHHHHHHHHh--cccCCCccHHHHHHHHHHhhccHHH
Confidence 3344445555678888777654 44444 355566677888899999998332 2222345666677788888888888
Q ss_pred HHHHHHh
Q 005990 104 ALESLKI 110 (666)
Q Consensus 104 A~~~l~~ 110 (666)
+...+.+
T Consensus 88 ~e~~l~r 94 (116)
T PF09477_consen 88 LESRLTR 94 (116)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777774
No 396
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.31 E-value=2.3 Score=27.53 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 005990 185 YNTACSLAEMNKYTEAEQLLLTARRIG 211 (666)
Q Consensus 185 ~~la~~~~~~g~~~~A~~~l~~a~~~~ 211 (666)
+.+|..|+.+|+++.|.+.++..+.-.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 678999999999999999999998543
No 397
>PF13041 PPR_2: PPR repeat family
Probab=83.25 E-value=4.8 Score=26.76 Aligned_cols=27 Identities=7% Similarity=-0.154 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhcCcC
Q 005990 388 ILLARAQVAAAANHPFIAAESLAKIPD 414 (666)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~l~~~~~ 414 (666)
.+..+...+.+.|++++|.++|+++.+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444555555555555555555543
No 398
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=83.02 E-value=2.8 Score=26.09 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 005990 231 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRN 260 (666)
Q Consensus 231 ~~~~~la~~~~~~g~~~eA~~~~~~~l~~~ 260 (666)
.++..||.+-...++|++|+.-|.+++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 478899999999999999999999998653
No 399
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=82.87 E-value=49 Score=32.27 Aligned_cols=173 Identities=14% Similarity=0.150 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhc--CC
Q 005990 36 FEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQ--EN 113 (666)
Q Consensus 36 ~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~--~~ 113 (666)
-++|+.+-.-++.+.|+.++++-..+..+++..+...= +.. .-.+-...+.=..++.-+-+++++.++.+. ..
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR---~~~--~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~ 286 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPAR---FDA--DGEPVLLEDQDRSLWDRALIDEGLALLDRALASR 286 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhc---cCC--CCCeeeccccchhhhhHHHHHHHHHHHHHHHHcC
Confidence 35788888888889999999998888877765443210 000 001111222223344444566666666651 11
Q ss_pred ChhHHHH---HHHHHHH-----cCCHHHHHHHHHHHHhhCCChhH-HHHHHHHHHcCChhHHHHHHHHhhhc--CCChHH
Q 005990 114 NPATMLL---KSQILYR-----SGEMDACVEFYQKLQKSKIDSLE-INFVAGLISAGRASEVQKTLDSLRVK--ATSSFE 182 (666)
Q Consensus 114 ~~~~~~~---la~~~~~-----~g~~~~A~~~~~~~l~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 182 (666)
.+.-|.+ ++-++.+ .-+|..-..+|.-+....|+... +|-+.++....-.+.++...+-+... -....-
T Consensus 287 ~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~ 366 (415)
T COG4941 287 RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHL 366 (415)
T ss_pred CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccc
Confidence 2222222 2222222 23566767788877777777665 77777777666677778777776554 123344
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 183 LAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 183 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
.+-..|.++.+.|+.++|...|++++.+..+
T Consensus 367 ~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 367 YHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred cHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Confidence 5667899999999999999999999999854
No 400
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=82.77 E-value=5.5 Score=37.54 Aligned_cols=63 Identities=13% Similarity=-0.045 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
.++-.++...++++.|..+.++.+..+|+++.-+.-.|.+|.+.|.+.-|++.++..+..+|+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 677778888999999999999999999999999999999999999999999999999999965
No 401
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.76 E-value=52 Score=36.47 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=40.2
Q ss_pred HHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 005990 29 RHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSS 80 (666)
Q Consensus 29 ~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~ 80 (666)
.++..|+.+.|++.+.++ ++.+.|..+|...+.+|+.+=|.-.|++.
T Consensus 652 LaLe~gnle~ale~akkl-----dd~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKL-----DDKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred eehhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 346778999999888775 67889999999999999999998888887
No 402
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=82.73 E-value=48 Score=32.33 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=93.9
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHhh--------------------------CChhHHHHHHHHHHhhC-CChhH
Q 005990 334 DQARELVAALPDMFPDSVMPLLLQAAVLVRE--------------------------NKAGKAEELLGQFAEKL-PDKSK 386 (666)
Q Consensus 334 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~--------------------------g~~~~A~~~l~~~~~~~-p~~~~ 386 (666)
++|+.+-.-+....|+.++.+-+.+.+++.. +-.+++..++.+++... |. +.
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pG-PY 291 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPG-PY 291 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCC-hH
Confidence 4566666666666777776665555444321 22457777787776544 33 22
Q ss_pred HHHHHHHHHHHH-----cCChhHHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHH
Q 005990 387 IILLARAQVAAA-----ANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSV 461 (666)
Q Consensus 387 ~~~~~la~~~~~-----~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 461 (666)
.+.-.++.++.. .-+|..-..+|.-+..+.|+|.+-.+.+.......-...++...+-....- .-..+..
T Consensus 292 qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~-----~L~gy~~ 366 (415)
T COG4941 292 QLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARP-----RLDGYHL 366 (415)
T ss_pred HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhccc-----ccccccc
Confidence 234444444432 346777777788777788877664444444433334666666666543321 0112222
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHhcCC
Q 005990 462 IMQEAASFKLRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 462 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
++..-|.++.+.|..++|...|++++.+.++
T Consensus 367 ~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 367 YHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred cHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Confidence 5556689999999999999999999999887
No 403
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.59 E-value=73 Score=34.06 Aligned_cols=94 Identities=12% Similarity=0.044 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--------HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHH
Q 005990 118 MLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--------INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTAC 189 (666)
Q Consensus 118 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 189 (666)
+..-|.-+++..+|..+++.|...+...|.+.. .++..+|....+.+.|.++++++.+.+|.++-..+..-+
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 344566778899999999999999887665443 788899999999999999999999999999988888999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhh
Q 005990 190 SLAEMNKYTEAEQLLLTARRIG 211 (666)
Q Consensus 190 ~~~~~g~~~~A~~~l~~a~~~~ 211 (666)
+....|.-++|+..+.......
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhhh
Confidence 9999999999999988877654
No 404
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=82.55 E-value=49 Score=32.05 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 005990 230 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNL 261 (666)
Q Consensus 230 ~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~ 261 (666)
.-+...||.|..++|+..||++.++.+.+..|
T Consensus 275 ~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 275 VYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 35677899999999999999999999987766
No 405
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.48 E-value=11 Score=27.85 Aligned_cols=55 Identities=16% Similarity=0.089 Sum_probs=35.4
Q ss_pred HHHcCChhHHHHHHHHhhhcCCChHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 005990 157 LISAGRASEVQKTLDSLRVKATSSFE---LAYNTACSLAEMNKYTEAEQLLLTARRIG 211 (666)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 211 (666)
++...+.++|+..+.++++..++..+ ++-.+..+|...|+|.+++.+-.+-+.+.
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A 73 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIA 73 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777765554444 44445556778888888887766655554
No 406
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.28 E-value=1.8e+02 Score=38.30 Aligned_cols=130 Identities=10% Similarity=-0.044 Sum_probs=73.1
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHH---HHHHHHc-CChhHHHHHHhcCcCCCC----ChhHHHHHHH
Q 005990 356 LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLAR---AQVAAAA-NHPFIAAESLAKIPDIQH----MPATVATLVA 427 (666)
Q Consensus 356 ~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~l---a~~~~~~-g~~~~A~~~l~~~~~~~~----~~~~~~~l~~ 427 (666)
..|.+....|-++.++..+.++...---...++...+ +.+|... +....++++++..--.+. ..+.+..-|.
T Consensus 2741 ~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~ 2820 (3550)
T KOG0889|consen 2741 RFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGM 2820 (3550)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhH
Confidence 3344555666677777777666544221111222221 2233333 355666777666432221 4456677899
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHh----CCC----hhhHHHHHHHHHHhcCC
Q 005990 428 LKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR----HGR----EEDASHLFEELVKTHGS 492 (666)
Q Consensus 428 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~----~~~A~~~~~~~l~~~p~ 492 (666)
+..+.|+.++|-..|..|++....-. ..|..-|.++.. .+. -..|+.+|-++.....+
T Consensus 2821 f~~kL~~~eeAn~~fs~AvQi~~~l~-------KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~ 2886 (3550)
T KOG0889|consen 2821 FLEKLGKFEEANKAFSAAVQIDDGLG-------KAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNS 2886 (3550)
T ss_pred HHHHhcCcchhHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999863332 244444444322 222 12466666666665544
No 407
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=82.15 E-value=59 Score=32.65 Aligned_cols=129 Identities=14% Similarity=0.132 Sum_probs=78.1
Q ss_pred HHHcCCHHHHHHHHHHHHh-hCCCh---hH-------HHHHHHHHHcCChhHHHHHHHHhhh-----cCCC-hHHHHHHH
Q 005990 125 LYRSGEMDACVEFYQKLQK-SKIDS---LE-------INFVAGLISAGRASEVQKTLDSLRV-----KATS-SFELAYNT 187 (666)
Q Consensus 125 ~~~~g~~~~A~~~~~~~l~-~~p~~---~~-------~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~~~~~~l 187 (666)
++...++.+|..+-+..+. ..-.+ .+ ..+..++-..|+...-...+...+. .+.. ...+...+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 3445667777666655533 11111 11 3333444445665555554444332 1222 23344455
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 005990 188 ACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADE 264 (666)
Q Consensus 188 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~ 264 (666)
-..|+..+.|+.|..+..+..-- +.+...+.+...+.+|.+..-+++|..|.+++-+++...|.+.
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~p-----------e~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYP-----------EAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCc-----------cccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 66788888899988877665311 1111235567888999999999999999999999999998753
No 408
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.07 E-value=97 Score=35.12 Aligned_cols=58 Identities=19% Similarity=0.366 Sum_probs=42.6
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHH-H---H-HHHHHHcCCHHHHHHHHHhh
Q 005990 23 LFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMR-C---K-VVALIKADNIDDALSTIQSS 80 (666)
Q Consensus 23 l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~-~---~-~~~~~~~g~~~~A~~~~~~~ 80 (666)
+-.+...+++...|++|+...+-....+|....... . . +.-++.+++|++|...|.++
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~ 372 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKS 372 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 455677778888899999999887766665322211 1 1 45578899999999999998
No 409
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.97 E-value=25 Score=31.94 Aligned_cols=60 Identities=13% Similarity=0.281 Sum_probs=53.4
Q ss_pred HHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch
Q 005990 26 SLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF 85 (666)
Q Consensus 26 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 85 (666)
.+..+++.+...+|+...+.-++..|.+....+.+...|.-.|+|++|+..++-+..+.+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p 66 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSP 66 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCc
Confidence 445677888999999999999999999999999999999999999999999998866654
No 410
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.45 E-value=9 Score=34.65 Aligned_cols=60 Identities=20% Similarity=0.096 Sum_probs=37.7
Q ss_pred HHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChh
Q 005990 326 LLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS 385 (666)
Q Consensus 326 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~ 385 (666)
-+++.+...+++.....-++..|.+......+-.+++-.|+|++|...++-+-...|+..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345566666666666666666666665555555666666666666666666666666543
No 411
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=81.33 E-value=12 Score=35.59 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005990 181 FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDII 257 (666)
Q Consensus 181 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l 257 (666)
..+...+|..|+..|+|++|+.+|+.+...... +....-+..+...+..|+...|+.+..+.+.-+++
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~---------egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR---------EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh---------CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 446778999999999999999999999766532 12223344677888899999999998887765544
No 412
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.86 E-value=39 Score=33.87 Aligned_cols=124 Identities=15% Similarity=-0.004 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHH----HHhccCcc
Q 005990 386 KIILLARAQVAAAANHPFIAAESLAKIPDIQH----MPATVATLVALKERAGDIDGAAAVLDSAIKWW----LNAMTEDN 457 (666)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~----~~~~~~~~ 457 (666)
..++..++..|...|+++.|+..|.++.+..- .-.++..+..+-...|+|.....+..+|.... ........
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 45777889999999999999999999776554 12234455555566889988888888776541 10111111
Q ss_pred hHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhc--------CChHHHHHHHHhhccCChhhHH
Q 005990 458 KLSVIMQEAASFKLRHGREEDASHLFEELVKTH--------GSIEALVGLVTTSAHVDVDKAE 512 (666)
Q Consensus 458 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~l~~l~~~~~~~d~~~a~ 512 (666)
. +....|.+.+..++|+.|...|-.+.... |.+.++-+.+-+++.+|.....
T Consensus 230 k---l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk 289 (466)
T KOG0686|consen 230 K---LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLK 289 (466)
T ss_pred c---hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHH
Confidence 1 33445666777779999999887654322 3345555566666777766544
No 413
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.71 E-value=26 Score=33.75 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHH
Q 005990 423 ATLVALKERAGDIDGAAAVLDSA 445 (666)
Q Consensus 423 ~~l~~~~~~~g~~~~A~~~l~~a 445 (666)
..++.+|...++..+|..+..++
T Consensus 148 iriarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 148 IRIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHH
Confidence 33445555555555555444443
No 414
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.67 E-value=6.1 Score=39.46 Aligned_cols=87 Identities=16% Similarity=0.253 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhcc------------c--hhhhHHHHHHHHHhCCH---HHH-------HHHHHh-
Q 005990 56 AMRCKVVALIKADNIDDALSTIQSSQKF------------T--FDFNYLKAYCLYRQNRL---DEA-------LESLKI- 110 (666)
Q Consensus 56 a~~~~~~~~~~~g~~~~A~~~~~~~~~~------------~--~~~~~~~a~~~~~~g~~---~~A-------~~~l~~- 110 (666)
.++.+|.+++....|.+|+.++-.+.+. + +-+.+.+.+||+++.++ .+| .+.|..
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 3456777888888888888888777321 1 12334667888887662 222 222222
Q ss_pred ---------------cCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005990 111 ---------------QEN---NPATMLLKSQILYRSGEMDACVEFYQKLQ 142 (666)
Q Consensus 111 ---------------~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l 142 (666)
.|+ ....+.+.|.+.|.+|+-++|.+.++.+.
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~ 294 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAH 294 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 011 12344555666666666666666666553
No 415
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.04 E-value=69 Score=32.29 Aligned_cols=157 Identities=12% Similarity=0.150 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhhhccHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhC
Q 005990 21 EDLFTSLNRHIERSEFE-QAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQN 99 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~-~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g 99 (666)
.+++.........+.|+ ++++.-.+++..+|+...+|+..-.++...---. .++-.++..-+ -+
T Consensus 29 ~~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~-~~~~~ek~~~l--------------d~ 93 (421)
T KOG0529|consen 29 RSLFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRA-QLEPLEKQALL--------------DE 93 (421)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhh-cCCHHHHHHhh--------------HH
Confidence 34455555566667664 7888889999999988777776555443321111 11111111000 01
Q ss_pred CHHHHHHHHHhcCCChhHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCChhH-HH-----HHHHHHHcCChhHHHHHHH
Q 005990 100 RLDEALESLKIQENNPATMLLKSQILYRSGE--MDACVEFYQKLQKSKIDSLE-IN-----FVAGLISAGRASEVQKTLD 171 (666)
Q Consensus 100 ~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~-~~-----l~~~~~~~g~~~~A~~~~~ 171 (666)
.+.--..++...|+...+|+.+..++.+.+. +..=+++.+++++.+|.+.. -+ ...+-.......+-++...
T Consensus 94 eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt 173 (421)
T KOG0529|consen 94 ELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTT 173 (421)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHH
Confidence 1111233455588899999999999988775 57778899999999888776 11 1111122233555677788
Q ss_pred HhhhcCCChHHHHHHHHHHHH
Q 005990 172 SLRVKATSSFELAYNTACSLA 192 (666)
Q Consensus 172 ~~~~~~~~~~~~~~~la~~~~ 192 (666)
+++..++.++.+|.+...++-
T Consensus 174 ~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 174 KLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHhccchhhhHHHHHHHHHH
Confidence 888889999999988877664
No 416
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.52 E-value=4.7 Score=23.46 Aligned_cols=30 Identities=17% Similarity=0.167 Sum_probs=25.6
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005990 34 SEFEQAVKVADQVLSTNPSDEDAMRCKVVA 63 (666)
Q Consensus 34 ~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~ 63 (666)
|+++.|..+|++++...|.+...|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 568899999999999999999888877654
No 417
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=79.47 E-value=37 Score=28.66 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=36.8
Q ss_pred hhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005990 31 IERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQ 78 (666)
Q Consensus 31 ~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~ 78 (666)
...+.....+.+++.++..++.+...+..++.+|+..+ -.+.+..+.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 34578999999999999998878888888888888654 355566666
No 418
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.50 E-value=6.8 Score=37.06 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=42.7
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 005990 25 TSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSS 80 (666)
Q Consensus 25 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~ 80 (666)
..+..+..+|.+.+|+.++++++..+|-+...+..+..+|...|+--.|...+++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34555677788888888888888888887778888888888888877777777765
No 419
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=78.49 E-value=8.9 Score=41.12 Aligned_cols=172 Identities=17% Similarity=0.107 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhccccCCCC------chHHHHHHHHHH---hhCChhHHHHHHHHHHhhCCChhHHHH
Q 005990 319 IYANRVLLLLHANKMDQARELVAALPDMFPDS------VMPLLLQAAVLV---RENKAGKAEELLGQFAEKLPDKSKIIL 389 (666)
Q Consensus 319 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~---~~g~~~~A~~~l~~~~~~~p~~~~~~~ 389 (666)
+..|+...|....+|+.-+++.+.+... |+. ....+..+-++- +-|+-++|+...-.+++.......+.+
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~ 281 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMY 281 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCcee
Confidence 3455667788888999888887766443 321 112222233333 367888999998888887644334455
Q ss_pred HHHHHHHH---------HcCChhHHHHHHhcCcCCCCChhHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHH--HhccCcc
Q 005990 390 LARAQVAA---------AANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDI-DGAAAVLDSAIKWWL--NAMTEDN 457 (666)
Q Consensus 390 ~~la~~~~---------~~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~l~~a~~~~~--~~~~~~~ 457 (666)
-+.+.+|- ..+..+.|+++|+++.+..|....-..++.++...|.. +...++-.-.+.+.. ...+...
T Consensus 282 Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~le 361 (1226)
T KOG4279|consen 282 CLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALE 361 (1226)
T ss_pred eeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHH
Confidence 55566653 45667889999999999998332223445555555543 222222221222111 1111112
Q ss_pred hHHHHHHHHHHHH---HhCCChhhHHHHHHHHHHhcCC
Q 005990 458 KLSVIMQEAASFK---LRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 458 ~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
.+..+| ..|.++ .-.+++.+|+..-+.++++.|-
T Consensus 362 klq~YW-dV~~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 362 KLQEYW-DVATYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred HHHHHH-hHHHhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 222333 344443 3457999999999999999976
No 420
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=78.33 E-value=45 Score=35.20 Aligned_cols=99 Identities=17% Similarity=-0.014 Sum_probs=48.6
Q ss_pred HHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHH-HHHHHHHhccCcchHHHHHHHHHHHH
Q 005990 393 AQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDS-AIKWWLNAMTEDNKLSVIMQEAASFK 470 (666)
Q Consensus 393 a~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~-a~~~~~~~~~~~~~~~~~~~~l~~~~ 470 (666)
+..+...+....+.-.+...+..+| ....+..|+......|....+...+.. +....+.+.........++. ++..+
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~ 152 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQ-LGRYL 152 (620)
T ss_pred HhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHH-HHHHH
Confidence 3334445555555555555555555 444444444444444444444443333 22222211111111112232 46666
Q ss_pred HhCCChhhHHHHHHHHHHhcCC
Q 005990 471 LRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 471 ~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
...|+..++....+++....|.
T Consensus 153 ~~l~~~~~~~~~l~~~~d~~p~ 174 (620)
T COG3914 153 KLLGRTAEAELALERAVDLLPK 174 (620)
T ss_pred HHhccHHHHHHHHHHHHHhhhh
Confidence 6777777777777777777766
No 421
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=78.26 E-value=3.5 Score=23.72 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005990 117 TMLLKSQILYRSGEMDACVEFYQKLQK 143 (666)
Q Consensus 117 ~~~~la~~~~~~g~~~~A~~~~~~~l~ 143 (666)
+|..+-..|.+.|++++|.++|+++.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 356667777777777777777777654
No 422
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.10 E-value=8.2 Score=36.55 Aligned_cols=61 Identities=16% Similarity=0.036 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 005990 388 ILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKW 448 (666)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~ 448 (666)
.+...+..|...|.+.+|+++.++++.++| +...+..|..++...|+--.+...|++.-+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 444566778899999999999999999999 8888899999999999999999888876544
No 423
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=77.85 E-value=49 Score=31.12 Aligned_cols=169 Identities=11% Similarity=-0.007 Sum_probs=91.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhccccCCCC-chHHHHHHHHH-HhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHH
Q 005990 320 YANRVLLLLHANKMDQARELVAALPDMFPDS-VMPLLLQAAVL-VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 397 (666)
Q Consensus 320 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~a~~~-~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~ 397 (666)
...+|.+....++|++...++.++...+++- ..-..++..+| ...|....+.+.+.................+..-|.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 3456888899999999999999998886653 23333343333 346677777777776655432211011112221111
Q ss_pred -----H-cCChhHHHHHHhcCcCCCC-Chh----HHHHHHHHHHHc-----C-----ChhHHHHHHHHHHHHHHHhccC-
Q 005990 398 -----A-ANHPFIAAESLAKIPDIQH-MPA----TVATLVALKERA-----G-----DIDGAAAVLDSAIKWWLNAMTE- 455 (666)
Q Consensus 398 -----~-~g~~~~A~~~l~~~~~~~~-~~~----~~~~l~~~~~~~-----g-----~~~~A~~~l~~a~~~~~~~~~~- 455 (666)
. ..--.+.+.++...+--.. ++. ++-..|..|.-. | -.+.|...|+.|+........+
T Consensus 84 ~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~ 163 (236)
T PF00244_consen 84 KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPT 163 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCC
Confidence 1 1112345555555432111 221 123334444321 1 2367888999999887764332
Q ss_pred cchH-HHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005990 456 DNKL-SVIMQEAASFKLRHGREEDASHLFEELVK 488 (666)
Q Consensus 456 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 488 (666)
++.. ..++......|-..|+.++|..+-++++.
T Consensus 164 ~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 164 HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3333 33443334444678999999988888775
No 424
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.83 E-value=31 Score=26.93 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=53.6
Q ss_pred hhccHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHh
Q 005990 32 ERSEFEQAVKVADQVLSTNPSD-EDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKI 110 (666)
Q Consensus 32 ~~~~~~~A~~~~~~~l~~~p~~-~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 110 (666)
-...+++|..+.+ .|...++. .-+-......++..|+|++|+.+.+... .|++.-..|.|-+++|-.+.+..-+..
T Consensus 17 G~HcHqEA~tIAd-wL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~--~pdlepw~ALce~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 17 GHHCHQEANTIAD-WLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLC--YPDLEPWLALCEWRLGLGSALESRLNR 93 (115)
T ss_pred cchHHHHHHHHHH-HHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCC--CchHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3445677776665 45665643 4445566778999999999999888762 566777788888888887776665543
No 425
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.45 E-value=1.2e+02 Score=33.41 Aligned_cols=169 Identities=14% Similarity=0.062 Sum_probs=92.5
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHH
Q 005990 25 TSLNRHIERSEFEQAVKVADQVLSTNPSD--EDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLD 102 (666)
Q Consensus 25 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 102 (666)
.....+++.+.|++|+...+.....-|.. .........-|+-.|+|++|-...-++.......|....+.+..+++..
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 34566778889999999877665554432 3455566666788899999988888875555556666666666677666
Q ss_pred HHHHHHHhcCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCCh
Q 005990 103 EALESLKIQEN--NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSS 180 (666)
Q Consensus 103 ~A~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 180 (666)
+-..++-..|. .+.++..+-..+.. .=...|.++++.-|.+.-..+..+-....+ ++.+..+
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~-----~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q-----------~~q~Se~ 504 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLA-----SDVKGFLELIKEWPGHLYSVLTIISATEPQ-----------IKQNSES 504 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHH-----HHHHHHHHHHHhCChhhhhhhHHHhhcchH-----------HHhhccc
Confidence 65555444332 33333332222221 112334455554444332111111000000 1111122
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 005990 181 FELAYNTACSLAEMNKYTEAEQLLLTARR 209 (666)
Q Consensus 181 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 209 (666)
..+.-.||..|+..++|..|+..|-++..
T Consensus 505 ~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 505 TALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred hhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 22333377777777888777777766543
No 426
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=77.34 E-value=35 Score=34.67 Aligned_cols=111 Identities=18% Similarity=0.197 Sum_probs=74.3
Q ss_pred ChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC--ChhHHHHHHHHHHHcCChhHHH-HHH
Q 005990 366 KAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH--MPATVATLVALKERAGDIDGAA-AVL 442 (666)
Q Consensus 366 ~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~-~~l 442 (666)
..-+|+-+++.++...|.+.. +.+.++.+|...|-...|...|..+ ++.. ...+-..+..-....|....+. ..+
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~-~~LlLvrlY~~LG~~~~A~~~~~~L-~iK~IQ~DTL~h~~~~r~~~~~~~~~~~~~~~ 275 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQ-LKLLLVRLYSLLGAGSLALEHYESL-DIKNIQLDTLGHLILDRLSTLGPFKSAPENLL 275 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHhc-ChHHHHHHHhHHHHHHHHhccCcccccchHHH
Confidence 355889999999999999876 8999999999999999999999875 2222 1112223333334467777776 888
Q ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHH
Q 005990 443 DSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEE 485 (666)
Q Consensus 443 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 485 (666)
+.++..+.......+ .....-++.|.|.+-.+..+-
T Consensus 276 ~~~~~fy~~~~~~~~-------e~i~~af~~gsysKi~ef~~F 311 (365)
T PF09797_consen 276 ENALKFYDNSEKETP-------EFIIKAFENGSYSKIEEFIEF 311 (365)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHhCCCchhHHHHHHH
Confidence 888887754433211 112334577788776665543
No 427
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=77.26 E-value=60 Score=33.11 Aligned_cols=125 Identities=18% Similarity=0.087 Sum_probs=69.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHhccccCCCCch--HH--HHHHHHHHhhCChhHHHHHHHHHHhhCCC--hhHHHHHHHHH
Q 005990 321 ANRVLLLLHANKMDQARELVAALPDMFPDSVM--PL--LLQAAVLVRENKAGKAEELLGQFAEKLPD--KSKIILLARAQ 394 (666)
Q Consensus 321 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~--~~~a~~~~~~g~~~~A~~~l~~~~~~~p~--~~~~~~~~la~ 394 (666)
...+..++..++|..|..++..+...-|.+.. .+ +..|-.+...-++.+|.+.|+.++...-. .....+..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~ 214 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVE 214 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 44577788999999999999999876444433 22 23334455688999999999988765211 00111222222
Q ss_pred HHHHcCChhHHHHHHhcCcCCCCChhHHHHHHHHHH------HcCChhHHHHHHHHHHHHH
Q 005990 395 VAAAANHPFIAAESLAKIPDIQHMPATVATLVALKE------RAGDIDGAAAVLDSAIKWW 449 (666)
Q Consensus 395 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~------~~g~~~~A~~~l~~a~~~~ 449 (666)
+......+........... . .+ ....++.++. ..|+|+.|...+-+++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~-~--~~-~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 215 VLKALESILSALEDKKQRQ-K--KL-YYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHHHHhhccchhhhhccc-c--cc-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 2211111111111111110 0 11 2223333332 4799999999999998875
No 428
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=77.14 E-value=1.2e+02 Score=33.22 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhccc-hhhhHHHHHHHHH
Q 005990 57 MRCKVVALIKADNIDDALSTIQSSQKFT-FDFNYLKAYCLYR 97 (666)
Q Consensus 57 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~a~~~~~ 97 (666)
++.++.||+-+++.+.+..++++..+.+ .-..+..|.-++.
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e~~~llayQIAFDL~e 254 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKEDDLLLAYQIAFDLYE 254 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhcchhhhHHHHHHHHhh
Confidence 4556677777888888888888875533 2344455554444
No 429
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=76.47 E-value=77 Score=30.73 Aligned_cols=66 Identities=20% Similarity=0.167 Sum_probs=48.7
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLST----NPSDEDAMRCKVVALIKADNIDDALSTIQSS 80 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~ 80 (666)
..|..++.+|.-+.-.+..|+|..|-.++-..... ++++..++..+..+-+-.-+|+.|++-+.+.
T Consensus 124 f~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rL 193 (432)
T KOG2758|consen 124 FTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRL 193 (432)
T ss_pred CCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34667888888898889999999888776554433 2334566666666777778899998888877
No 430
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.11 E-value=1.1e+02 Score=31.88 Aligned_cols=60 Identities=12% Similarity=-0.006 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSS 80 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~ 80 (666)
+-.-++..+..+.++..+.-...+|.++|... .+-.+++.++.||...| -++-..++++.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en~-n~~l~~lWer~ 124 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKENG-NEQLYSLWERL 124 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhcC-chhhHHHHHHH
Confidence 33445555666666666777777888888775 45667888888888774 34555666654
No 431
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=74.91 E-value=0.95 Score=48.29 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHhcccc--CCC-CchHHHHHHHHHHhhCChhHHHHHHH
Q 005990 321 ANRVLLLLHANKMDQARELVAALPDM--FPD-SVMPLLLQAAVLVRENKAGKAEELLG 375 (666)
Q Consensus 321 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~ 375 (666)
+..+..++..|++..|..++.++... .+. .....++.|.+....|+++.|+..|.
T Consensus 28 L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~ 85 (536)
T PF04348_consen 28 LLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLN 85 (536)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhc
Confidence 33344455555555555555444311 111 11333444445555555555555544
No 432
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=74.90 E-value=1.2e+02 Score=32.21 Aligned_cols=116 Identities=12% Similarity=-0.029 Sum_probs=75.5
Q ss_pred HHHHHHhccccCCCCchHHHH--HHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhc-C
Q 005990 336 ARELVAALPDMFPDSVMPLLL--QAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAK-I 412 (666)
Q Consensus 336 A~~~~~~~~~~~p~~~~~~~~--~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~-~ 412 (666)
++..+...+..++.++.+++. +...+...+....+.-.+...+..+|++.. ++..++......|....+...+.. +
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCP-AVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccch-HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555555566666655332 355556677887888888888999988766 566666555556665555554444 5
Q ss_pred cCCCC-ChhHHHH------HHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 005990 413 PDIQH-MPATVAT------LVALKERAGDIDGAAAVLDSAIKWWLNA 452 (666)
Q Consensus 413 ~~~~~-~~~~~~~------l~~~~~~~g~~~~A~~~l~~a~~~~~~~ 452 (666)
....| +..++.. ++.+...+|+..++...+++++...+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 55555 4444433 4777777888888888888888877654
No 433
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=74.48 E-value=82 Score=30.08 Aligned_cols=33 Identities=12% Similarity=0.074 Sum_probs=28.7
Q ss_pred hhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005990 227 IELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 227 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~ 259 (666)
.+...++.++|..|.+.++.+.+.+++.+.+..
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~ 144 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRD 144 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 445689999999999999999999999888754
No 434
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=74.00 E-value=28 Score=35.39 Aligned_cols=107 Identities=16% Similarity=-0.028 Sum_probs=69.4
Q ss_pred ChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhH
Q 005990 401 HPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDA 479 (666)
Q Consensus 401 ~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 479 (666)
..-+|+-+++.++...| ++.+...++.+|...|-...|...|...=-.. .++..+-..+..-+...|....+
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~-------IQ~DTL~h~~~~r~~~~~~~~~~ 270 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKN-------IQLDTLGHLILDRLSTLGPFKSA 270 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHH-------HHHHHhHHHHHHHHhccCccccc
Confidence 34578888898888888 88999999999999999999999997541111 00001111112222345566666
Q ss_pred H-HHHHHHHHhcCC--hHHHHHHHHhhccCChhhHHHH
Q 005990 480 S-HLFEELVKTHGS--IEALVGLVTTSAHVDVDKAESY 514 (666)
Q Consensus 480 ~-~~~~~~l~~~p~--~~~l~~l~~~~~~~d~~~a~~~ 514 (666)
. ..++.++....+ .+.--.++.+|.+....+..++
T Consensus 271 ~~~~~~~~~~fy~~~~~~~~e~i~~af~~gsysKi~ef 308 (365)
T PF09797_consen 271 PENLLENALKFYDNSEKETPEFIIKAFENGSYSKIEEF 308 (365)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHH
Confidence 5 666666665533 2333456778877777777665
No 435
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=73.91 E-value=5.5 Score=23.55 Aligned_cols=26 Identities=19% Similarity=0.274 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhh
Q 005990 56 AMRCKVVALIKADNIDDALSTIQSSQ 81 (666)
Q Consensus 56 a~~~~~~~~~~~g~~~~A~~~~~~~~ 81 (666)
+|..+..+|.+.|++++|..+|.++.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46777888899999999999998874
No 436
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.84 E-value=46 Score=37.51 Aligned_cols=168 Identities=14% Similarity=0.077 Sum_probs=96.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHhccccCC-CCc---hHHHHHHHHHHhhCCh--hHHHHHHHHHHhhCCChhHHHHH----
Q 005990 321 ANRVLLLLHANKMDQARELVAALPDMFP-DSV---MPLLLQAAVLVRENKA--GKAEELLGQFAEKLPDKSKIILL---- 390 (666)
Q Consensus 321 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~---~~~~~~a~~~~~~g~~--~~A~~~l~~~~~~~p~~~~~~~~---- 390 (666)
..++.+|...|+.++|..++.++..... .+. ..+-.....+...+.. +-..++..-.+..+|+....++.
T Consensus 508 ~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~ 587 (877)
T KOG2063|consen 508 RELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDK 587 (877)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccCh
Confidence 4558889999999999999999887542 111 2222222333334433 44455555555555542211111
Q ss_pred --------HHHHHHHHcCChhHHHHHHhcCcCCCC--ChhHHHHHHHHHHHc--------CChhHHHHH--HHHHHHHHH
Q 005990 391 --------ARAQVAAAANHPFIAAESLAKIPDIQH--MPATVATLVALKERA--------GDIDGAAAV--LDSAIKWWL 450 (666)
Q Consensus 391 --------~la~~~~~~g~~~~A~~~l~~~~~~~~--~~~~~~~l~~~~~~~--------g~~~~A~~~--l~~a~~~~~ 450 (666)
..+.-|+.....+-++.+|+.++.... ...+...++.+|... ++-+++.+. .++......
T Consensus 588 ~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~ 667 (877)
T KOG2063|consen 588 QEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLE 667 (877)
T ss_pred hhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhh
Confidence 122235667788888999999877655 444455566665532 222344444 333333222
Q ss_pred HhccC-------cchHHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005990 451 NAMTE-------DNKLSVIMQEAASFKLRHGREEDASHLFEELVK 488 (666)
Q Consensus 451 ~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 488 (666)
....- ......+|...+.++.+.|+.++|+.+|-..+.
T Consensus 668 ~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 668 SSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 11111 111234777888889999999999999887775
No 437
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=72.78 E-value=57 Score=27.49 Aligned_cols=76 Identities=14% Similarity=0.095 Sum_probs=36.2
Q ss_pred hhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHH
Q 005990 363 RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVL 442 (666)
Q Consensus 363 ~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l 442 (666)
..+.....+.+++.++..++.+ ...+..++.+|... +..+.++.+..-. .. .-....+.++.+.+-++++.-++
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~-~~~~~~li~ly~~~-~~~~ll~~l~~~~--~~--yd~~~~~~~c~~~~l~~~~~~l~ 92 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSEN-PALQTKLIELYAKY-DPQKEIERLDNKS--NH--YDIEKVGKLCEKAKLYEEAVELY 92 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccc-hhHHHHHHHHHHHH-CHHHHHHHHHhcc--cc--CCHHHHHHHHHHcCcHHHHHHHH
Confidence 3455666666666666655432 23555555555543 3344455555210 01 01223344445555555555555
Q ss_pred HH
Q 005990 443 DS 444 (666)
Q Consensus 443 ~~ 444 (666)
.+
T Consensus 93 ~k 94 (140)
T smart00299 93 KK 94 (140)
T ss_pred Hh
Confidence 43
No 438
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=72.65 E-value=6 Score=22.70 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHh
Q 005990 463 MQEAASFKLRHGREEDASHLFEELVKT 489 (666)
Q Consensus 463 ~~~l~~~~~~~g~~~~A~~~~~~~l~~ 489 (666)
|..+...|.+.|++++|.++|+++.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 456678889999999999999998764
No 439
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=72.05 E-value=8.9 Score=22.56 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005990 117 TMLLKSQILYRSGEMDACVEFYQKLQKS 144 (666)
Q Consensus 117 ~~~~la~~~~~~g~~~~A~~~~~~~l~~ 144 (666)
.|..+-..|.+.|++++|.++|.++...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3566677778888888888888887653
No 440
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=71.84 E-value=10 Score=22.30 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005990 117 TMLLKSQILYRSGEMDACVEFYQKLQKS 144 (666)
Q Consensus 117 ~~~~la~~~~~~g~~~~A~~~~~~~l~~ 144 (666)
.|..+...+.+.|+++.|..+|+.+.+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5667777788888888888888877653
No 441
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=71.16 E-value=75 Score=28.18 Aligned_cols=39 Identities=18% Similarity=0.103 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHH
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACS 190 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 190 (666)
.....+++..|.+++|.+++++... ++++......|..+
T Consensus 115 ~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 115 EQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 3445566777777777777777766 55555444434433
No 442
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=69.99 E-value=19 Score=34.54 Aligned_cols=77 Identities=5% Similarity=-0.053 Sum_probs=63.6
Q ss_pred cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHH---HHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHH
Q 005990 111 QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEIN---FVAGLISAGRASEVQKTLDSLRVKATSSFELAYNT 187 (666)
Q Consensus 111 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 187 (666)
.++++..|...+......+-|.+--.+|.+++..+|.+.+.. -..-+...++++.+...|.+.+..+++++..|+..
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 456888998888888888899999999999999999998822 23335568899999999999999999998887643
No 443
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=69.03 E-value=1.9e+02 Score=32.12 Aligned_cols=194 Identities=5% Similarity=-0.095 Sum_probs=108.2
Q ss_pred CCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHhhhcc--chhhhHHH
Q 005990 17 PPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALI---KADNIDDALSTIQSSQKF--TFDFNYLK 91 (666)
Q Consensus 17 p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~---~~g~~~~A~~~~~~~~~~--~~~~~~~~ 91 (666)
+-+.......+..+...|++++....-.++.++.|..+..|.....-.. ..+.-.++...|+++... ....|.+.
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~e~ 189 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWEEV 189 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHHHH
Confidence 3345566677777888999998888888888888988888877665433 346777888888888432 23344444
Q ss_pred HHHH-------HHhCCHHHHHHHHHhcCC-----------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH---
Q 005990 92 AYCL-------YRQNRLDEALESLKIQEN-----------NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--- 150 (666)
Q Consensus 92 a~~~-------~~~g~~~~A~~~l~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--- 150 (666)
+..+ +..++++....+|.+.-. ....+.-.-..|...-..++-+.++...+... -+.+
T Consensus 190 ~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~ 268 (881)
T KOG0128|consen 190 VNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRG 268 (881)
T ss_pred HHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhH
Confidence 4333 334556666666655221 12223333344444444455666666665543 2222
Q ss_pred ---HHHH--HHH-HHcCChhHHHHH-------HHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 005990 151 ---INFV--AGL-ISAGRASEVQKT-------LDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIG 211 (666)
Q Consensus 151 ---~~l~--~~~-~~~g~~~~A~~~-------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 211 (666)
.... ..+ ....+++.|... |+..+...+.-...|..+.......|+...-...++++..-.
T Consensus 269 ~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~ 342 (881)
T KOG0128|consen 269 WDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEM 342 (881)
T ss_pred HHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhc
Confidence 1111 111 112334444433 333344444455556666666667777766666666665544
No 444
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=68.15 E-value=35 Score=28.35 Aligned_cols=55 Identities=22% Similarity=0.330 Sum_probs=36.8
Q ss_pred HHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 005990 157 LISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIG 211 (666)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 211 (666)
+...|.-++-..++..+.+....+++.++.+|.+|-..|+..+|.+++.+|-+..
T Consensus 96 lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3445666666666666665556678899999999999999999999999887765
No 445
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=68.01 E-value=1.3e+02 Score=29.78 Aligned_cols=103 Identities=19% Similarity=0.176 Sum_probs=71.9
Q ss_pred HHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChh
Q 005990 324 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPF 403 (666)
Q Consensus 324 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~ 403 (666)
...++..|+...|.++..+.. -| +...|+....++...++|++-..+... +..| + .+.-.+.+++..|+..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk--v~-dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsP---I-GyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK--VP-DKRFWWLKIKALAENKDWDELEKFAKS--KKSP---I-GYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC--Cc-HHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCC---C-ChHHHHHHHHHCCCHH
Confidence 344567788888877766652 12 446777888899999999876654332 2223 3 5556677888899999
Q ss_pred HHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHH
Q 005990 404 IAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLD 443 (666)
Q Consensus 404 ~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 443 (666)
+|..++.++-. ...+.+|.+.|++.+|.+..-
T Consensus 255 eA~~yI~k~~~--------~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 255 EASKYIPKIPD--------EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHhCCh--------HHHHHHHHHCCCHHHHHHHHH
Confidence 99999988321 456778889999998876644
No 446
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=66.87 E-value=1e+02 Score=31.88 Aligned_cols=158 Identities=14% Similarity=0.061 Sum_probs=83.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHH------HHHHHhhCC-------hhHHHHHHHHHHhh------
Q 005990 320 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQ------AAVLVRENK-------AGKAEELLGQFAEK------ 380 (666)
Q Consensus 320 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~------a~~~~~~g~-------~~~A~~~l~~~~~~------ 380 (666)
...+|.+.+..++|+-|...|+.+.+.+-+|....+.. |..+...+. .++...+++.++..
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~ 290 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL 290 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence 34558899999999999999999988776553222211 111222221 12333344432221
Q ss_pred ----CCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCC--CC--C---hhH-HHHHHHHH--HHcCChhHHHHHHHHHH
Q 005990 381 ----LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI--QH--M---PAT-VATLVALK--ERAGDIDGAAAVLDSAI 446 (666)
Q Consensus 381 ----~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~--~---~~~-~~~l~~~~--~~~g~~~~A~~~l~~a~ 446 (666)
.+.....+.+..+.++...|.+.+|...+-++... .. . ..+ +..++.+| ...+....-..-+++
T Consensus 291 ~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~RK-- 368 (414)
T PF12739_consen 291 PRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFRK-- 368 (414)
T ss_pred cccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhHH--
Confidence 12233445666677777778877766655554332 11 1 112 12222233 111000000011111
Q ss_pred HHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcC
Q 005990 447 KWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG 491 (666)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 491 (666)
....+...|.-|...|+...|..+|..++....
T Consensus 369 ------------~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 369 ------------YAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred ------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 112233447778899999999999999998764
No 447
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.67 E-value=2.1e+02 Score=31.64 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=33.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHhcCCCh------hHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005990 90 LKAYCLYRQNRLDEALESLKIQENNP------ATMLLKSQILYRSGEMDACVEFYQKLQK 143 (666)
Q Consensus 90 ~~a~~~~~~g~~~~A~~~l~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~ 143 (666)
.....+.+-+.|++|++..+..+.+. .++..+..-+...|+|++|....-.++.
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 44466677777888888777755432 2334444445667777777777666654
No 448
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=66.61 E-value=11 Score=22.09 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhh
Q 005990 55 DAMRCKVVALIKADNIDDALSTIQSSQ 81 (666)
Q Consensus 55 ~a~~~~~~~~~~~g~~~~A~~~~~~~~ 81 (666)
..|..+..++.+.|+++.|..+|+.+.
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 357778888889999999999888874
No 449
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.33 E-value=62 Score=25.38 Aligned_cols=69 Identities=16% Similarity=0.036 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 005990 59 CKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFY 138 (666)
Q Consensus 59 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 138 (666)
.++.++...++-+++..++. ...+...|+|++|..+.+..+ .+.+--++|-+-.+.|-.+++...+
T Consensus 26 tIAdwL~~~~~~~E~v~lIR-------------lsSLmNrG~Yq~Al~l~~~~~-~pdlepw~ALce~rlGl~s~l~~rl 91 (115)
T TIGR02508 26 TIADWLHLKGESEEAVQLIR-------------LSSLMNRGDYQSALQLGNKLC-YPDLEPWLALCEWRLGLGSALESRL 91 (115)
T ss_pred HHHHHHhcCCchHHHHHHHH-------------HHHHHccchHHHHHHhcCCCC-CchHHHHHHHHHHhhccHHHHHHHH
Confidence 44555555554455554444 345677888999988887765 6666677777778888777666655
Q ss_pred HHH
Q 005990 139 QKL 141 (666)
Q Consensus 139 ~~~ 141 (666)
.++
T Consensus 92 ~rl 94 (115)
T TIGR02508 92 NRL 94 (115)
T ss_pred HHH
Confidence 544
No 450
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=66.16 E-value=1.4 Score=43.94 Aligned_cols=13 Identities=38% Similarity=0.527 Sum_probs=7.4
Q ss_pred CCCCCccccccCC
Q 005990 654 KGSSKSSRKKSRN 666 (666)
Q Consensus 654 ~~~~~~~~~~~~~ 666 (666)
+++.||+|||+|+
T Consensus 71 kkq~kk~kkgkr~ 83 (807)
T KOG0066|consen 71 KKQAKKGKKGKRN 83 (807)
T ss_pred HHHhhhccccccc
Confidence 3344556677664
No 451
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=65.90 E-value=1.4e+02 Score=29.35 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=83.4
Q ss_pred HHHhhCChhHHHHHHHHHHhhC-----CChhHHHHHHHHHHHHHcCChhHHHHHHhcCcC-------CCC-ChhHHHHHH
Q 005990 360 VLVRENKAGKAEELLGQFAEKL-----PDKSKIILLARAQVAAAANHPFIAAESLAKIPD-------IQH-MPATVATLV 426 (666)
Q Consensus 360 ~~~~~g~~~~A~~~l~~~~~~~-----p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~-------~~~-~~~~~~~l~ 426 (666)
+..+.++.++|+++++++.+.- |+-........+.+++..|+..++.+.+....+ +.+ -...++.++
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ls 163 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLS 163 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHH
Confidence 3445667888888888776532 332333455567778888888888777766533 222 111233343
Q ss_pred -HHHHHcCChhHHHHHHHHHHHHHHHh-ccC--cchHHHHHHHHHHHHH-hCC--Chh--hHHHHHHHHHHhcCChHHHH
Q 005990 427 -ALKERAGDIDGAAAVLDSAIKWWLNA-MTE--DNKLSVIMQEAASFKL-RHG--REE--DASHLFEELVKTHGSIEALV 497 (666)
Q Consensus 427 -~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~--~~~~~~~~~~l~~~~~-~~g--~~~--~A~~~~~~~l~~~p~~~~l~ 497 (666)
..|...|++.. +|..++....-. ... ..+.......++.+.+ ..| ++- -|.-+|+.+.. .+.+.+.
T Consensus 164 sqYyk~~~d~a~---yYr~~L~YL~~~d~~~l~~se~~~lA~~L~~aALLGe~iyNfGELL~HPilesL~g--T~~eWL~ 238 (380)
T KOG2908|consen 164 SQYYKKIGDFAS---YYRHALLYLGCSDIDDLSESEKQDLAFDLSLAALLGENIYNFGELLAHPILESLKG--TNREWLK 238 (380)
T ss_pred HHHHHHHHhHHH---HHHHHHHHhccccccccCHHHHHHHHHHHHHHHHhccccccHHHHHhhHHHHHhcC--CcHHHHH
Confidence 44445666653 444444432111 000 0111111112222211 111 222 24556666553 4467888
Q ss_pred HHHHhhccCChhhHHHHHhcCCCCC
Q 005990 498 GLVTTSAHVDVDKAESYEKRLKPLP 522 (666)
Q Consensus 498 ~l~~~~~~~d~~~a~~~~~~l~~~~ 522 (666)
.++.++..+|+.+-+++...-...|
T Consensus 239 dll~Afn~Gdl~~f~~l~~~~~~~p 263 (380)
T KOG2908|consen 239 DLLIAFNSGDLKRFESLKGVWGKQP 263 (380)
T ss_pred HHHHHhccCCHHHHHHHHHHhccCc
Confidence 8999999999988888766544433
No 452
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=64.77 E-value=13 Score=21.37 Aligned_cols=28 Identities=21% Similarity=0.081 Sum_probs=17.0
Q ss_pred ChhHHHHHHHHhhhcCCChHHHHHHHHH
Q 005990 162 RASEVQKTLDSLRVKATSSFELAYNTAC 189 (666)
Q Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~la~ 189 (666)
+++.|..+|++++...|.+.++|...+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4556666666666666666666654443
No 453
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=63.60 E-value=26 Score=32.43 Aligned_cols=34 Identities=6% Similarity=0.010 Sum_probs=22.7
Q ss_pred hHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCChh
Q 005990 116 ATMLLKSQILY---------RSGEMDACVEFYQKLQKSKIDSL 149 (666)
Q Consensus 116 ~~~~~la~~~~---------~~g~~~~A~~~~~~~l~~~p~~~ 149 (666)
..+-..|..++ ..++...|+.++++++..+|...
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 34445555553 34567788888888888877643
No 454
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=63.32 E-value=16 Score=26.89 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.0
Q ss_pred HcCChHHHHHHHHHHHhh
Q 005990 242 LLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 242 ~~g~~~eA~~~~~~~l~~ 259 (666)
..|++++|+.+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 468999999999988854
No 455
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=63.27 E-value=1.2e+02 Score=31.25 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCChhH-HHHHHHHHHcCChhHHHHHHHHhhh
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQK--SKIDSLE-INFVAGLISAGRASEVQKTLDSLRV 175 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 175 (666)
+...+.+...|+..|..++++.++..=+. ..||+.. ..+...++..|+|..|..+...+..
T Consensus 103 ~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~l 166 (429)
T PF10037_consen 103 PSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMML 166 (429)
T ss_pred CccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 34456777777888888888777766544 4566666 6666677778888888777766544
No 456
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.54 E-value=1.5e+02 Score=28.30 Aligned_cols=123 Identities=14% Similarity=0.034 Sum_probs=69.3
Q ss_pred HHHHhhCChhHHHHHHHHHHhhC--------CCh-----hHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC--ChhHHH
Q 005990 359 AVLVRENKAGKAEELLGQFAEKL--------PDK-----SKIILLARAQVAAAANHPFIAAESLAKIPDIQH--MPATVA 423 (666)
Q Consensus 359 ~~~~~~g~~~~A~~~l~~~~~~~--------p~~-----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~--~~~~~~ 423 (666)
..++-..+|..|+..+++.++.- +.. ...+....+|++...+++.+++.+.-+..+.-. -|.++.
T Consensus 43 d~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIle 122 (309)
T PF07163_consen 43 DLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILE 122 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHH
Confidence 34444556666666666554422 100 012334456778888999988887666544332 466777
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHHHhCCChhhHHHHH
Q 005990 424 TLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS-VIMQEAASFKLRHGREEDASHLF 483 (666)
Q Consensus 424 ~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 483 (666)
.-+-+|.+.+++....+.-..-+. .|++.. .+++. .+-.++-.+++=.|.+++|.++.
T Consensus 123 LCILLysKv~Ep~amlev~~~WL~-~p~Nq~-lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 123 LCILLYSKVQEPAAMLEVASAWLQ-DPSNQS-LPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHh-CcccCC-chhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 778888899988766554433222 222211 12211 11123345556679999998877
No 457
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=60.44 E-value=36 Score=27.99 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=27.3
Q ss_pred hhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005990 31 IERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIK 66 (666)
Q Consensus 31 ~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~ 66 (666)
+..-+.+.|..+|+++++.+|++..++..+...+-.
T Consensus 87 iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 87 IAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 555678999999999999999998888887776544
No 458
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=60.24 E-value=1.6 Score=37.33 Aligned_cols=78 Identities=21% Similarity=0.274 Sum_probs=53.4
Q ss_pred HhhhccHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch----------hhhHHHHHHHHHh
Q 005990 30 HIERSEFEQAVKVADQVLSTNP-SDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF----------DFNYLKAYCLYRQ 98 (666)
Q Consensus 30 ~~~~~~~~~A~~~~~~~l~~~p-~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~~a~~~~~~ 98 (666)
+.+.+.....+.+++.++..++ .+...+..++.+|++.+++++.+.+++.....+. ..+-+.+++|.+.
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCEKHGLYEEAVYLYSKL 96 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHHTTTSHHHHHHHHHCC
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHHhcchHHHHHHHHHHc
Confidence 3446777888888998887654 4588889999999999988999988886533221 2333555566666
Q ss_pred CCHHHHHHH
Q 005990 99 NRLDEALES 107 (666)
Q Consensus 99 g~~~~A~~~ 107 (666)
|++++|+.+
T Consensus 97 ~~~~~al~i 105 (143)
T PF00637_consen 97 GNHDEALEI 105 (143)
T ss_dssp TTHTTCSST
T ss_pred ccHHHHHHH
Confidence 777666664
No 459
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.21 E-value=99 Score=25.65 Aligned_cols=77 Identities=10% Similarity=0.063 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhhCCChhH-------HHHHHHHHHcCChhHHHHHHHHhhh--cCCChHHHHHHHHHHHHHhcCHHHH
Q 005990 130 EMDACVEFYQKLQKSKIDSLE-------INFVAGLISAGRASEVQKTLDSLRV--KATSSFELAYNTACSLAEMNKYTEA 200 (666)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~-------~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A 200 (666)
.-..-..++++++....++.. +.+...|+. ..+.+..+|..+.. ........+...|..+...|++.+|
T Consensus 41 ~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~--~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A 118 (126)
T PF08311_consen 41 KQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD--LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKA 118 (126)
T ss_dssp CCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT--TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHH
T ss_pred chhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH--HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 344445566666554332211 333333333 34488888887765 4456777888889999999999999
Q ss_pred HHHHHHHH
Q 005990 201 EQLLLTAR 208 (666)
Q Consensus 201 ~~~l~~a~ 208 (666)
.++|+.++
T Consensus 119 ~~I~~~Gi 126 (126)
T PF08311_consen 119 DEIYQLGI 126 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99998764
No 460
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=59.93 E-value=78 Score=27.42 Aligned_cols=59 Identities=22% Similarity=0.207 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhh--------cCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRV--------KATSSFELAYNTACSLAEMNKYTEAEQLLLTARR 209 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 209 (666)
+..+.-.+..|+...|.+.++-+.. ..-..+......|..++..|++.+|...|..++.
T Consensus 79 i~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 79 IKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 4556667889999999998887643 1123566778889999999999999999999875
No 461
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=59.91 E-value=1.3e+02 Score=26.96 Aligned_cols=75 Identities=13% Similarity=-0.012 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHH---HHHHHHHHcCChHHHHHHHHHHH
Q 005990 183 LAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAV---QLAYVQQLLGNTQEAFGAYTDII 257 (666)
Q Consensus 183 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~la~~~~~~g~~~eA~~~~~~~l 257 (666)
.++.-|.+-..+..|-+|..+|.-...-+-.++.+-++++.++--.++.+.- .........|++++|...|+-+-
T Consensus 71 el~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 71 ELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFME 148 (204)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4555566666777788888887766655544333333333332122222211 12233456788999988887554
No 462
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.27 E-value=90 Score=24.87 Aligned_cols=18 Identities=17% Similarity=-0.001 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHcCChhHH
Q 005990 388 ILLARAQVAAAANHPFIA 405 (666)
Q Consensus 388 ~~~~la~~~~~~g~~~~A 405 (666)
+.+.....+..+|+|++|
T Consensus 42 v~lIr~~sLmNrG~Yq~A 59 (116)
T PF09477_consen 42 VALIRLSSLMNRGDYQEA 59 (116)
T ss_dssp HHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 333344444455555555
No 463
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=59.20 E-value=2.1e+02 Score=29.06 Aligned_cols=64 Identities=17% Similarity=0.070 Sum_probs=43.5
Q ss_pred CCCcHHHHHH--HHHHHhhhccHHHHHHHHHHHHhcCCCC-----HHHHHHH--HHHHHHcCCHHHHHHHHHh
Q 005990 16 PPPPIEDLFT--SLNRHIERSEFEQAVKVADQVLSTNPSD-----EDAMRCK--VVALIKADNIDDALSTIQS 79 (666)
Q Consensus 16 ~p~~~~~l~~--~~~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~a~~~~--~~~~~~~g~~~~A~~~~~~ 79 (666)
+|-.+..... .+..+++.++|..|..+|++++...++. ...+..+ |..+...-++++|...+++
T Consensus 124 nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 124 DPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4444444444 4557899999999999999999885422 2333334 4445556678889988885
No 464
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.17 E-value=2.1e+02 Score=29.04 Aligned_cols=100 Identities=8% Similarity=-0.021 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhh
Q 005990 229 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD 308 (666)
Q Consensus 229 ~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~ 308 (666)
+-.++..+|.-|...|+++.|++.|.++-....+..
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k-------------------------------------------- 184 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK-------------------------------------------- 184 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH--------------------------------------------
Confidence 346888999999999999999999998643322111
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccC-------CC-CchHHHHHHHHHHhhCChhHHHHHHHHHH
Q 005990 309 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF-------PD-SVMPLLLQAAVLVRENKAGKAEELLGQFA 378 (666)
Q Consensus 309 ~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~~ 378 (666)
+...+..|...+.+..|+|.....+..++...- +. ...+....|.+....++|..|.++|-.+.
T Consensus 185 ------hvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 185 ------HVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred ------HHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 111233444555566666666555555443320 00 11244455566667778888888876543
No 465
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=59.17 E-value=94 Score=32.35 Aligned_cols=91 Identities=14% Similarity=0.082 Sum_probs=55.6
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccc----------
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFT---------- 84 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~---------- 84 (666)
.-|.++.-+...+..+..++.|++|+++|.-+ .+...|.+++-+.....+..-+...|..+.+.+
T Consensus 568 LlpisV~py~~iL~e~~sssKWeqavRLCrfv-----~eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ 642 (737)
T KOG1524|consen 568 LLPISVNPYPEILHEYLSSSKWEQAVRLCRFV-----QEQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKA 642 (737)
T ss_pred eEeeeccccHHHHHHHhccchHHHHHHHHHhc-----cchHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhc
Confidence 44667777888899999999999999999875 333466666655555555444333333331111
Q ss_pred -hhhhHHHHHHHHHhCCHHHHHHHHHh
Q 005990 85 -FDFNYLKAYCLYRQNRLDEALESLKI 110 (666)
Q Consensus 85 -~~~~~~~a~~~~~~g~~~~A~~~l~~ 110 (666)
+.-.-.+|.....+|++.+|.-++..
T Consensus 643 ltske~~mA~~~l~~G~~~eAe~iLl~ 669 (737)
T KOG1524|consen 643 LTSKEEQMAENSLMLGRMLEAETILLH 669 (737)
T ss_pred cCcHHHHHHHHHHHhccchhhhHHHHh
Confidence 12223445555566666666665544
No 466
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=58.94 E-value=19 Score=35.37 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=43.6
Q ss_pred CcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHH
Q 005990 18 PPIEDLFTSLNRHIERSEFEQAVKVADQVLSTN--------PSDEDAMRCKVVALIKADNIDDAL 74 (666)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~a~~~~~~~~~~~g~~~~A~ 74 (666)
..+..++..++.++.+++++.|...|..+..+. -.+.++++.+|.+++..++++..+
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357789999999999999999999998887652 224667777777777777766554
No 467
>KOG4121 consensus Nuclear pore complex, Nup133 component (sc Nup133) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.51 E-value=94 Score=35.23 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcC
Q 005990 57 MRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQE 112 (666)
Q Consensus 57 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~ 112 (666)
...+...++..|+++.|+++-++.. +-.....+.+++....+++.+...|...+
T Consensus 775 Rrdwlq~L~~vg~~e~Ai~iAEKY~--DfqsLV~lcdqld~kdrLq~y~~~~~e~~ 828 (1128)
T KOG4121|consen 775 RRDWLQVLCKVGQYEQAIQIAEKYK--DFQSLVQLCDQLDQKDRLQDYETFFNEYP 828 (1128)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhh--hHHHHHHHHHhhCchhHHHHHHHHHHhhh
Confidence 3444556666677777777666652 22333445555555555666665555544
No 468
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=57.82 E-value=7.3 Score=33.18 Aligned_cols=54 Identities=9% Similarity=-0.016 Sum_probs=38.2
Q ss_pred HHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcC
Q 005990 361 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD 414 (666)
Q Consensus 361 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 414 (666)
+...+.....+.+++.++..++.........++.+|++.+.+++...+++....
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~ 70 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN 70 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc
Confidence 445667777888888888666554455788888888888887888888875443
No 469
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=56.90 E-value=3.1e+02 Score=30.30 Aligned_cols=54 Identities=17% Similarity=0.099 Sum_probs=34.1
Q ss_pred HHHcCChHHHHHHHHhccccC--CCC----chHHHHHHHHHHhhCChhHHHHHHHHHHhhCC
Q 005990 327 LLHANKMDQARELVAALPDMF--PDS----VMPLLLQAAVLVRENKAGKAEELLGQFAEKLP 382 (666)
Q Consensus 327 ~~~~~~~~~A~~~~~~~~~~~--p~~----~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p 382 (666)
.++.|+..+|.+++...+-.. +.. --+++.+|.++...|. ...+++...+....
T Consensus 367 vIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~--~~~~yL~~~Lk~~~ 426 (929)
T KOG2062|consen 367 VIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGR--GITDYLLQQLKTAE 426 (929)
T ss_pred eeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCc--cHHHHHHHHHHhcc
Confidence 467788888888888776552 111 1355666666555554 37777777776543
No 470
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.72 E-value=2.1e+02 Score=28.25 Aligned_cols=24 Identities=4% Similarity=-0.086 Sum_probs=9.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhC
Q 005990 237 AYVQQLLGNTQEAFGAYTDIIKRN 260 (666)
Q Consensus 237 a~~~~~~g~~~eA~~~~~~~l~~~ 260 (666)
...|..-.++-.+--.|...+...
T Consensus 201 ~~~yea~~~l~npYv~Yl~~lf~a 224 (449)
T COG3014 201 LDKYEAYQGLLNPYVSYLSGLFYA 224 (449)
T ss_pred HHHHHhhcccchHHHHHHHHHhcc
Confidence 333333344444444444444333
No 471
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=54.97 E-value=2.2e+02 Score=32.29 Aligned_cols=50 Identities=18% Similarity=0.176 Sum_probs=30.0
Q ss_pred ChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhh
Q 005990 245 NTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEK 296 (666)
Q Consensus 245 ~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~ 296 (666)
.-++|.++|+.+....|+...++.+....++...+ ...+..++++++++.
T Consensus 1090 ~~e~~~k~~~~l~s~ypd~lpll~~~l~kl~~~sD--~~kE~~~ki~eIl~~ 1139 (1304)
T KOG1114|consen 1090 ADEEAEKIYNYLKSSYPDYLPLLEVRLAKLMQKSD--AVKETNKKIEEILSA 1139 (1304)
T ss_pred hHHHHHHHHHHHHHhCcccchHHHHHHHHhhhhcc--cchHHHHHHHHHHHH
Confidence 44569999999999999776665555444443221 112444555555544
No 472
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=54.50 E-value=2.2e+02 Score=27.91 Aligned_cols=121 Identities=18% Similarity=0.039 Sum_probs=74.5
Q ss_pred HcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHH----HHHhhCCC--------------hh-----
Q 005990 329 HANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLG----QFAEKLPD--------------KS----- 385 (666)
Q Consensus 329 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~----~~~~~~p~--------------~~----- 385 (666)
..+++.+.++.++.....+|--.+.+++.+.++.+.|. +.+...+. .++...|. ..
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~WL 189 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRAWL 189 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHHHH
Confidence 45566666666666666666666677777777777773 33322222 22233221 00
Q ss_pred -----------------------HHHHHHHHHHHHHcCChhHHHHHHhcCcCCC--CC--hhHHHHHHHHHHHcCChhHH
Q 005990 386 -----------------------KIILLARAQVAAAANHPFIAAESLAKIPDIQ--HM--PATVATLVALKERAGDIDGA 438 (666)
Q Consensus 386 -----------------------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~A 438 (666)
..-...-+......|.++.|+..++..+... +. -.....++.++...|.++-|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA 269 (301)
T TIGR03362 190 AQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELA 269 (301)
T ss_pred HhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 0011122455677889999999999754432 32 22346789999999999999
Q ss_pred HHHHHHHHHHHH
Q 005990 439 AAVLDSAIKWWL 450 (666)
Q Consensus 439 ~~~l~~a~~~~~ 450 (666)
..+|+...+...
T Consensus 270 ~~ll~~L~~~~~ 281 (301)
T TIGR03362 270 QQLYAALDQQIQ 281 (301)
T ss_pred HHHHHHHHHHHH
Confidence 999998877553
No 473
>PF13934 ELYS: Nuclear pore complex assembly
Probab=54.22 E-value=1.1e+02 Score=28.53 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=67.1
Q ss_pred HHHHHHHHhhhccch-hhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChh
Q 005990 71 DDALSTIQSSQKFTF-DFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSL 149 (666)
Q Consensus 71 ~~A~~~~~~~~~~~~-~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 149 (666)
..+...|.....+.+ ...+..|.++...+++++|++.+....-.+.......+++...|+...|+.+++.. .-.....
T Consensus 63 ~~~~~~Fa~~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~-~p~l~s~ 141 (226)
T PF13934_consen 63 SELAESFARAFGIPPKYIKFIQGFWLLDHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAV-GPPLSSP 141 (226)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhc-CCCCCCH
Confidence 345666666655544 35567888888889999999998653223344445667777789999999888764 2222223
Q ss_pred H-HHHHHHHHHcCChhHHHHHHHHhh
Q 005990 150 E-INFVAGLISAGRASEVQKTLDSLR 174 (666)
Q Consensus 150 ~-~~l~~~~~~~g~~~~A~~~~~~~~ 174 (666)
+ ..+..+....+...+|....+...
T Consensus 142 ~~~~~~~~~La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 142 EALTLYFVALANGLVTEAFSFQRSYP 167 (226)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCc
Confidence 3 444444577788888887665543
No 474
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=53.94 E-value=31 Score=25.54 Aligned_cols=32 Identities=22% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005990 198 TEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 198 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~ 259 (666)
..|+.+..+|++.+ ..|+|++|+.+|..+++.
T Consensus 4 ~~Ai~~a~~Ave~D------------------------------~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 4 RDAVQFARLAVQRD------------------------------QEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHH------------------------------HccCHHHHHHHHHHHHHH
No 475
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.79 E-value=3.5e+02 Score=29.95 Aligned_cols=102 Identities=21% Similarity=0.187 Sum_probs=69.4
Q ss_pred HHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHH
Q 005990 359 AVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGA 438 (666)
Q Consensus 359 ~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 438 (666)
.-+...|+..+|.++-.+. .-|+ ..++..-...+...+++++-.++-++-.. | --+.-.+..+.+.|+.++|
T Consensus 692 ~~li~~g~~k~a~ql~~~F--kipd--Kr~~wLk~~aLa~~~kweeLekfAkskks--P--IGy~PFVe~c~~~~n~~EA 763 (829)
T KOG2280|consen 692 TTLILIGQNKRAEQLKSDF--KIPD--KRLWWLKLTALADIKKWEELEKFAKSKKS--P--IGYLPFVEACLKQGNKDEA 763 (829)
T ss_pred HHHHHccchHHHHHHHHhc--CCcc--hhhHHHHHHHHHhhhhHHHHHHHHhccCC--C--CCchhHHHHHHhcccHHHH
Confidence 3456678888887765543 2244 33666677788888999887776665432 3 2233456788899999999
Q ss_pred HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHH
Q 005990 439 AAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLF 483 (666)
Q Consensus 439 ~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 483 (666)
..++-+.-. +...+..|++.|++.+|+++-
T Consensus 764 ~KYiprv~~---------------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 764 KKYIPRVGG---------------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hhhhhccCC---------------hHHHHHHHHHhccHHHHHHHH
Confidence 999876421 115577888999999998653
No 476
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=53.48 E-value=1.6e+02 Score=26.10 Aligned_cols=96 Identities=10% Similarity=0.048 Sum_probs=46.3
Q ss_pred ChhHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCChhH-HHHHHHHHH-----cCChhHHHHHHHHhhhcCCChHHHHHH
Q 005990 114 NPATMLLKSQILYR-SGEMDACVEFYQKLQKSKIDSLE-INFVAGLIS-----AGRASEVQKTLDSLRVKATSSFELAYN 186 (666)
Q Consensus 114 ~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~-~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 186 (666)
.+...++|+..+-. ..+|++|..+|..--..+..... +.++.-++. .++...|+..|..+-. .+.+.+..+
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~ 110 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRY 110 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhh
Confidence 45555555555422 34566666666543222111111 333322221 3345556666655543 344556666
Q ss_pred HHHHHHHh-----cC--HHHHHHHHHHHHHhh
Q 005990 187 TACSLAEM-----NK--YTEAEQLLLTARRIG 211 (666)
Q Consensus 187 la~~~~~~-----g~--~~~A~~~l~~a~~~~ 211 (666)
+|.++..- ++ ..+|+.++.++..+.
T Consensus 111 ~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~ 142 (248)
T KOG4014|consen 111 LGLLHWNGEKDRKADPDSEKAERYMTRACDLE 142 (248)
T ss_pred hhhhhccCcCCccCCCCcHHHHHHHHHhccCC
Confidence 66665532 22 556667776666554
No 477
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.38 E-value=17 Score=32.87 Aligned_cols=47 Identities=15% Similarity=0.060 Sum_probs=32.3
Q ss_pred HHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 005990 404 IAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWL 450 (666)
Q Consensus 404 ~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~ 450 (666)
..++..++.+...|++.++..++.++...|+.++|...+.++...+|
T Consensus 129 ~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33444555556667777777777777777777777777777776664
No 478
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=53.09 E-value=1.1e+02 Score=32.99 Aligned_cols=86 Identities=20% Similarity=0.117 Sum_probs=66.0
Q ss_pred HHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChh
Q 005990 324 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPF 403 (666)
Q Consensus 324 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~ 403 (666)
+..+.+....+.+...++.-......+....+..|..+-..+..+.|-.+|+.++.++|++ .++..|+-+.+.|-..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 91 (578)
T PRK15490 15 CLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDE---ARYEYARRLYNTGLAK 91 (578)
T ss_pred HHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcc---hHHHHHHHHHhhhhhh
Confidence 4455666777777777776554444445666777888888899999999999999999883 6677788888889999
Q ss_pred HHHHHHhcC
Q 005990 404 IAAESLAKI 412 (666)
Q Consensus 404 ~A~~~l~~~ 412 (666)
.|..++.++
T Consensus 92 ~~~~~~~~~ 100 (578)
T PRK15490 92 DAQLILKKV 100 (578)
T ss_pred HHHHHHHHh
Confidence 999988854
No 479
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=52.54 E-value=2.9e+02 Score=28.67 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 005990 232 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADE 264 (666)
Q Consensus 232 ~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~ 264 (666)
....||++++..|+|+-|...|+.+.+...+|.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk 242 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK 242 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch
Confidence 567899999999999999999999987555553
No 480
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=51.06 E-value=1.6e+02 Score=25.43 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=10.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHh
Q 005990 151 INFVAGLISAGRASEVQKTLDSL 173 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~ 173 (666)
++.+..+...|++.+|...+..+
T Consensus 121 v~~A~~ll~~~k~~eA~~aL~~A 143 (155)
T PF10938_consen 121 VKQAAALLDEGKYYEANAALKQA 143 (155)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444455555555444444
No 481
>COG4499 Predicted membrane protein [Function unknown]
Probab=50.94 E-value=1.1e+02 Score=30.54 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=41.9
Q ss_pred HHHcCCHHHHHHHHHhhh--ccchhhhHHHHHHHHHhCCHHHHHH--HHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 005990 64 LIKADNIDDALSTIQSSQ--KFTFDFNYLKAYCLYRQNRLDEALE--SLKIQENNPATMLLKSQILYRSGEMDACVEFYQ 139 (666)
Q Consensus 64 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~a~~~~~~g~~~~A~~--~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 139 (666)
-+-..+|++.+..++... .++..+.|.+|+.|.....+..... ++....-...--+++=+++...|++++|+.+-+
T Consensus 258 aFL~~nY~qVittLe~ydp~klPksv~Y~LA~SYV~~e~L~~~kkeNi~NnislkSd~~~llYWi~~GRGe~~eAinIAr 337 (434)
T COG4499 258 AFLKNNYDQVITTLENYDPEKLPKSVQYILAVSYVNLEDLTTTKKENILNNISLKSDDNYLLYWIYSGRGEFKEAINIAR 337 (434)
T ss_pred HHHhccHHHHhhhcccCChhhCcHHHHHHHHHHHhhccccchHHHHHHhhccccccchhHHHHHHHhcCccHHHHhhHHH
Confidence 334466777777666652 2334566677777766655444322 222211122233455566777777777777665
Q ss_pred H
Q 005990 140 K 140 (666)
Q Consensus 140 ~ 140 (666)
.
T Consensus 338 ~ 338 (434)
T COG4499 338 N 338 (434)
T ss_pred h
Confidence 4
No 482
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=49.34 E-value=48 Score=24.64 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHHhcCC
Q 005990 476 EEDASHLFEELVKTHGS 492 (666)
Q Consensus 476 ~~~A~~~~~~~l~~~p~ 492 (666)
|.+|++.|..+++..||
T Consensus 29 Y~~aie~l~~~lk~e~d 45 (77)
T cd02683 29 YQEGIDLLMQVLKGTKD 45 (77)
T ss_pred HHHHHHHHHHHHhhCCC
Confidence 33445555555555565
No 483
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=48.19 E-value=74 Score=29.59 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=24.0
Q ss_pred HHHHHHHHHH---------hCCChhhHHHHHHHHHHhcCC
Q 005990 462 IMQEAASFKL---------RHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 462 ~~~~l~~~~~---------~~g~~~~A~~~~~~~l~~~p~ 492 (666)
++..+|..++ ..++...|..+|++++.++|.
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 5555666664 345778999999999999988
No 484
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=47.64 E-value=78 Score=25.88 Aligned_cols=76 Identities=12% Similarity=-0.038 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCH
Q 005990 118 MLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKY 197 (666)
Q Consensus 118 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 197 (666)
+.++|...++.+++-.++-.|++++....+-.. ......++-+ + -......|+|..+..+|+-
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~-------~~~~el~dll--~--------i~VisCHNLA~FWR~~gd~ 66 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDE-------SNEIELEDLL--T--------ISVISCHNLADFWRSQGDS 66 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc-------cccccHHHHH--H--------HHHHHHhhHHHHHHHcCCh
Confidence 567899999999999999999998764211100 0000000000 0 0233677888889999998
Q ss_pred HHHHHHHHHHHHh
Q 005990 198 TEAEQLLLTARRI 210 (666)
Q Consensus 198 ~~A~~~l~~a~~~ 210 (666)
+-.+++++-|-+.
T Consensus 67 ~yELkYLqlASE~ 79 (140)
T PF10952_consen 67 DYELKYLQLASEK 79 (140)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877664
No 485
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=47.19 E-value=1.6e+02 Score=30.94 Aligned_cols=55 Identities=35% Similarity=0.387 Sum_probs=28.3
Q ss_pred HHHHHhhCChhHHHHHHHHHH-hhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcC
Q 005990 358 AAVLVRENKAGKAEELLGQFA-EKLPDKSKIILLARAQVAAAANHPFIAAESLAKI 412 (666)
Q Consensus 358 a~~~~~~g~~~~A~~~l~~~~-~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 412 (666)
+.++.++|+...|..++.++- ...+.......+..+.+.....++..|...|.+.
T Consensus 70 a~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~ 125 (604)
T COG3107 70 ARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLAKL 125 (604)
T ss_pred HHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhc
Confidence 345555555555555555544 3333333334444555555555555555555554
No 486
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=47.14 E-value=2.2e+02 Score=26.38 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCC--CCHHHHH--HHHHHHHHcCCHHHHHHHHHhh
Q 005990 23 LFTSLNRHIERSEFEQAVKVADQVLSTNP--SDEDAMR--CKVVALIKADNIDDALSTIQSS 80 (666)
Q Consensus 23 l~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~a~~--~~~~~~~~~g~~~~A~~~~~~~ 80 (666)
+-..+..|+....|.+|...|.+-....| .+.+.+. ....-.+..|+.++|++.+...
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHh
Confidence 33455555555666666666655555544 2222221 2223345666666666665554
No 487
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=47.05 E-value=6.4 Score=42.16 Aligned_cols=56 Identities=18% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhcCc--CCCC--ChhHHHHHHHHHHHcCChhHHHHHHH
Q 005990 388 ILLARAQVAAAANHPFIAAESLAKIP--DIQH--MPATVATLVALKERAGDIDGAAAVLD 443 (666)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~l~~~~--~~~~--~~~~~~~l~~~~~~~g~~~~A~~~l~ 443 (666)
..+..+..++..|++..|..++..+. .+.+ ........+.+....|+++.|+..|.
T Consensus 26 ~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~ 85 (536)
T PF04348_consen 26 LLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLN 85 (536)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhc
Confidence 34444445555555555555555443 1112 12222333444445555555555554
No 488
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=46.18 E-value=49 Score=24.43 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005990 196 KYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 196 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~ 259 (666)
.++.|+.++.+|+..+ ..|++++|+.+|..++..
T Consensus 2 ~l~~Ai~lv~~Av~~D------------------------------~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 2 SLEKAIALVVQAVKKD------------------------------QRGDAAAALSLYCSALQY 35 (75)
T ss_pred cHHHHHHHHHHHHHHH------------------------------HhccHHHHHHHHHHHHHH
No 489
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=46.06 E-value=43 Score=32.95 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh-hC--CChhH------------------HHHHHHHHHcCChhHHHHHHHHhhhcCCCh
Q 005990 122 SQILYRSGEMDACVEFYQKLQK-SK--IDSLE------------------INFVAGLISAGRASEVQKTLDSLRVKATSS 180 (666)
Q Consensus 122 a~~~~~~g~~~~A~~~~~~~l~-~~--p~~~~------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 180 (666)
+.-.++.+++..|..-|.+.++ .+ +.+.. .+++.+-...+.+..|+..-..++..++..
T Consensus 229 ~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~ 308 (372)
T KOG0546|consen 229 GNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSK 308 (372)
T ss_pred chhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhh
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHH
Q 005990 181 FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQE 248 (666)
Q Consensus 181 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~e 248 (666)
..++|..+..+....++++|++.+..+.... |++. .+.-.+..+-....++.+
T Consensus 309 tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~----------p~d~-----~i~~~~~~~~~~~~~~~~ 361 (372)
T KOG0546|consen 309 TKAHYRRGQAYKLLKNYDEALEDLKKAKQKA----------PNDK-----AIEEELENVRQKKKQYNR 361 (372)
T ss_pred CcHHHHHHhHHHhhhchhhhHHHHHHhhccC----------cchH-----HHHHHHHHhhhHHHHHHH
No 490
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.38 E-value=2.7e+02 Score=26.21 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHhh
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPS-DEDAMRCKVVALIK-ADNIDDALSTIQSS 80 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~a~~~~~~~~~~-~g~~~~A~~~~~~~ 80 (666)
+.++..+..+.+.|+|++.+.+..+++..++. +.+-...+.++|-. .|....++..+...
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 35778888999999999999999999999775 35666666766632 35555556555554
No 491
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=45.13 E-value=53 Score=24.24 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005990 232 IAVQLAYVQQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 232 ~~~~la~~~~~~g~~~eA~~~~~~~l~ 258 (666)
.+...|.-+-..|++.+|+.+|+.+++
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445555556667888888888877663
No 492
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=44.79 E-value=1.2e+02 Score=25.82 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHH
Q 005990 352 MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA 398 (666)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~ 398 (666)
...+..+...+..|++.-|..++..++..+|++.. +....+.++..
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~-ar~l~A~al~~ 116 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEE-ARQLKADALEQ 116 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHH
Confidence 34455555566667777777777777777776543 55555555544
No 493
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=44.48 E-value=1.8e+02 Score=28.88 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=42.6
Q ss_pred HHHHHHHHhhhccH-HHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhhcc
Q 005990 23 LFTSLNRHIERSEF-EQAVKVADQVLSTNPSD---EDAMRCKVVALIKADNIDDALSTIQSSQKF 83 (666)
Q Consensus 23 l~~~~~~~~~~~~~-~~A~~~~~~~l~~~p~~---~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~ 83 (666)
.|.....++..|-. ++.+..++.++..-|+- +..|.|++.++-..|.+++.+.+|++|...
T Consensus 105 tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 105 TLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Confidence 44455555666643 46777777777777753 667888888888888888888888887443
No 494
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.31 E-value=3.3e+02 Score=26.95 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 005990 183 LAYNTACSLAEMNKYTEAEQLLLTARRIG 211 (666)
Q Consensus 183 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 211 (666)
+.+.+|.-|+..++++.|..-|.++....
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~rQ 155 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANERQ 155 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHHH
Confidence 45678888999999999999998887765
No 495
>PF13934 ELYS: Nuclear pore complex assembly
Probab=43.86 E-value=2.7e+02 Score=25.91 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=19.7
Q ss_pred HHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHh
Q 005990 61 VVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKI 110 (666)
Q Consensus 61 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 110 (666)
|..++..++|++|+..+... ...+........++...|+...|+.++..
T Consensus 85 g~W~LD~~~~~~A~~~L~~p-s~~~~~~~~Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 85 GFWLLDHGDFEEALELLSHP-SLIPWFPDKILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHhChHhHHHHHHHhCCC-CCCcccHHHHHHHHHHCCChhHHHHHHHh
Confidence 33333344444444444332 12233333344444444444444444443
No 496
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=43.74 E-value=2.2e+02 Score=29.48 Aligned_cols=80 Identities=10% Similarity=-0.045 Sum_probs=47.1
Q ss_pred hHHHHHHHHhccccCCC---CchHHHHHHHHHHhhCChhHHHHHHHHHHh--hCCChhHHHHHHHHHHHHHcCChhHHHH
Q 005990 333 MDQARELVAALPDMFPD---SVMPLLLQAAVLVRENKAGKAEELLGQFAE--KLPDKSKIILLARAQVAAAANHPFIAAE 407 (666)
Q Consensus 333 ~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~la~~~~~~g~~~~A~~ 407 (666)
.+++..++-+.....-. -+.........+...|..++++.++..=+. ..|++. ....+...++..|++..|.+
T Consensus 82 ~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~--s~n~Lmd~fl~~~~~~~A~~ 159 (429)
T PF10037_consen 82 LDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF--SFNLLMDHFLKKGNYKSAAK 159 (429)
T ss_pred HHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh--hHHHHHHHHhhcccHHHHHH
Confidence 44555555554332111 112233555667778888888887775443 346532 45556667778888888888
Q ss_pred HHhcCcC
Q 005990 408 SLAKIPD 414 (666)
Q Consensus 408 ~l~~~~~ 414 (666)
+...+..
T Consensus 160 V~~~~~l 166 (429)
T PF10037_consen 160 VATEMML 166 (429)
T ss_pred HHHHHHH
Confidence 7776543
No 497
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=43.64 E-value=48 Score=24.79 Aligned_cols=17 Identities=18% Similarity=0.433 Sum_probs=12.8
Q ss_pred HcCChHHHHHHHHHHHh
Q 005990 242 LLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 242 ~~g~~~eA~~~~~~~l~ 258 (666)
..|+.++|+.+|++++.
T Consensus 20 E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 20 EWGDKEQALAHYRKGLR 36 (79)
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 45788888888887764
No 498
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=43.35 E-value=58 Score=23.98 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005990 197 YTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 197 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~ 259 (666)
++.|+.++.+|+..+ ..|++++|+.+|..++..
T Consensus 3 ~~~A~~l~~~Av~~D------------------------------~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 3 LQKAIELVKKAIEED------------------------------NAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHH------------------------------HcCCHHHHHHHHHHHHHH
No 499
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=43.31 E-value=66 Score=18.62 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005990 39 AVKVADQVLSTNPSDEDAMRCKVVALIK 66 (666)
Q Consensus 39 A~~~~~~~l~~~p~~~~a~~~~~~~~~~ 66 (666)
.+.+...++..+|.+..+|..+-.++-+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 4678899999999999999887766544
No 500
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=43.21 E-value=1.3e+02 Score=22.17 Aligned_cols=29 Identities=7% Similarity=0.063 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHh
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLS 48 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~ 48 (666)
...+...+..+-+.|++++|+.+|+++++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34566777777778888877777766554
Done!