Query 005990
Match_columns 666
No_of_seqs 829 out of 3330
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 13:02:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-37 6.1E-42 319.9 40.9 376 24-475 3-388 (388)
2 2xpi_A Anaphase-promoting comp 100.0 2.6E-36 8.9E-41 330.0 47.0 442 18-503 82-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-35 5.4E-40 305.4 39.1 367 59-501 4-381 (388)
4 2xpi_A Anaphase-promoting comp 100.0 8.9E-33 3.1E-37 302.0 40.9 431 52-518 82-576 (597)
5 2gw1_A Mitochondrial precursor 100.0 1.7E-32 5.9E-37 293.8 37.7 413 19-495 5-484 (514)
6 3fp2_A TPR repeat-containing p 100.0 8.8E-32 3E-36 290.1 37.1 435 19-517 24-487 (537)
7 2y4t_A DNAJ homolog subfamily 100.0 4.7E-31 1.6E-35 277.7 41.2 383 14-480 20-445 (450)
8 2y4t_A DNAJ homolog subfamily 100.0 3.6E-30 1.2E-34 270.9 36.3 355 36-492 8-413 (450)
9 3ieg_A DNAJ homolog subfamily 100.0 5.3E-29 1.8E-33 253.2 40.0 331 19-433 2-354 (359)
10 3fp2_A TPR repeat-containing p 100.0 3.6E-30 1.2E-34 277.4 33.0 402 15-494 54-496 (537)
11 2gw1_A Mitochondrial precursor 100.0 2E-28 6.8E-33 262.2 40.9 396 54-517 6-474 (514)
12 3ieg_A DNAJ homolog subfamily 100.0 6.4E-28 2.2E-32 245.2 36.8 311 114-493 2-339 (359)
13 4g1t_A Interferon-induced prot 100.0 1.2E-26 4E-31 245.7 31.1 378 50-492 47-462 (472)
14 3hym_B Cell division cycle pro 100.0 5.1E-26 1.7E-30 228.3 33.8 298 17-435 19-321 (330)
15 3hym_B Cell division cycle pro 100.0 1.3E-26 4.5E-31 232.6 29.3 267 15-403 51-322 (330)
16 2xm6_A Protein corresponding t 100.0 2.7E-24 9.3E-29 228.2 44.6 388 17-492 36-470 (490)
17 1fch_A Peroxisomal targeting s 99.9 1.5E-26 5.3E-31 236.1 23.1 312 124-489 34-359 (368)
18 2xm6_A Protein corresponding t 99.9 3.8E-24 1.3E-28 227.1 42.1 363 39-492 26-435 (490)
19 1fch_A Peroxisomal targeting s 99.9 9.4E-26 3.2E-30 230.3 25.7 285 115-452 64-363 (368)
20 2ooe_A Cleavage stimulation fa 99.9 1.5E-23 5.2E-28 224.8 39.8 404 15-492 8-495 (530)
21 4eqf_A PEX5-related protein; a 99.9 4.7E-25 1.6E-29 224.9 21.7 275 114-447 64-355 (365)
22 4eqf_A PEX5-related protein; a 99.9 1.2E-24 4E-29 222.0 21.8 278 151-487 69-354 (365)
23 4g1t_A Interferon-induced prot 99.9 1.8E-23 6E-28 221.3 30.3 334 16-425 90-470 (472)
24 3cv0_A Peroxisome targeting si 99.9 1.3E-23 4.5E-28 210.4 23.6 272 114-454 20-321 (327)
25 3cv0_A Peroxisome targeting si 99.9 2.6E-23 8.8E-28 208.2 24.0 266 19-379 20-314 (327)
26 2ooe_A Cleavage stimulation fa 99.9 4.4E-21 1.5E-25 205.6 42.9 411 43-517 2-488 (530)
27 3u4t_A TPR repeat-containing p 99.9 1E-22 3.5E-27 198.1 27.1 241 20-267 3-258 (272)
28 2h6f_A Protein farnesyltransfe 99.9 2.7E-23 9.2E-28 210.1 23.2 252 111-432 93-366 (382)
29 2h6f_A Protein farnesyltransfe 99.9 7.9E-23 2.7E-27 206.6 25.5 255 13-363 90-365 (382)
30 3mkr_A Coatomer subunit epsilo 99.9 3E-22 1E-26 196.0 26.5 276 26-409 5-288 (291)
31 3sf4_A G-protein-signaling mod 99.9 2.4E-22 8.2E-27 207.8 26.3 309 114-479 8-366 (406)
32 2pl2_A Hypothetical conserved 99.9 1.2E-22 4.2E-27 189.9 21.5 198 17-257 2-212 (217)
33 3sf4_A G-protein-signaling mod 99.9 9.5E-22 3.2E-26 203.3 27.1 287 17-380 6-336 (406)
34 3uq3_A Heat shock protein STI1 99.9 3.6E-21 1.2E-25 185.4 25.8 222 18-260 3-237 (258)
35 3e4b_A ALGK; tetratricopeptide 99.9 6E-21 2.1E-25 199.2 27.9 350 24-492 7-390 (452)
36 3u4t_A TPR repeat-containing p 99.9 1.5E-21 5E-26 189.9 21.2 245 116-429 4-265 (272)
37 2pl2_A Hypothetical conserved 99.9 2.5E-21 8.6E-26 180.9 21.8 198 112-378 2-212 (217)
38 3mkr_A Coatomer subunit epsilo 99.9 5.1E-21 1.8E-25 187.2 24.8 263 156-502 8-277 (291)
39 4a1s_A PINS, partner of inscut 99.9 3.1E-21 1E-25 200.0 23.5 279 115-449 48-373 (411)
40 3uq3_A Heat shock protein STI1 99.9 4.7E-21 1.6E-25 184.5 23.1 231 151-452 9-240 (258)
41 4a1s_A PINS, partner of inscut 99.9 1.4E-20 4.7E-25 195.1 28.3 290 17-383 45-375 (411)
42 3ro2_A PINS homolog, G-protein 99.9 3.1E-20 1.1E-24 186.3 27.2 287 19-382 4-334 (338)
43 3ro2_A PINS homolog, G-protein 99.9 9.3E-21 3.2E-25 190.1 22.6 279 116-450 6-334 (338)
44 1xi4_A Clathrin heavy chain; a 99.9 1.5E-18 5.3E-23 191.5 40.8 382 22-480 987-1375(1630)
45 1ouv_A Conserved hypothetical 99.9 1.5E-19 5.1E-24 175.8 28.8 228 16-264 2-256 (273)
46 1xi4_A Clathrin heavy chain; a 99.9 1.4E-17 4.8E-22 184.0 45.5 431 20-514 1105-1585(1630)
47 2q7f_A YRRB protein; TPR, prot 99.9 7.1E-20 2.4E-24 174.6 23.1 207 19-267 22-230 (243)
48 2ho1_A Type 4 fimbrial biogene 99.8 2E-19 6.9E-24 172.6 25.3 211 15-267 31-246 (252)
49 3vtx_A MAMA; tetratricopeptide 99.8 2.1E-19 7.3E-24 163.3 22.4 169 18-213 3-173 (184)
50 2vq2_A PILW, putative fimbrial 99.8 1.1E-18 3.9E-23 163.9 28.1 210 16-267 4-219 (225)
51 3ulq_A Response regulator aspa 99.8 1.1E-18 3.9E-23 178.7 29.0 242 153-450 109-370 (383)
52 1xnf_A Lipoprotein NLPI; TPR, 99.8 5.4E-20 1.8E-24 179.1 16.7 251 120-442 10-269 (275)
53 2q7f_A YRRB protein; TPR, prot 99.8 3.3E-19 1.1E-23 169.9 20.2 215 114-397 22-238 (243)
54 1xnf_A Lipoprotein NLPI; TPR, 99.8 2E-19 7E-24 175.0 18.6 225 29-265 14-250 (275)
55 3vtx_A MAMA; tetratricopeptide 99.8 1.7E-18 5.8E-23 157.3 22.1 171 52-264 3-175 (184)
56 2ho1_A Type 4 fimbrial biogene 99.8 7E-18 2.4E-22 161.8 25.6 204 115-386 37-244 (252)
57 3ulq_A Response regulator aspa 99.8 1.1E-17 3.6E-22 171.5 28.3 246 183-492 105-371 (383)
58 3q15_A PSP28, response regulat 99.8 1.7E-17 5.7E-22 169.6 29.2 242 154-450 108-367 (378)
59 1ouv_A Conserved hypothetical 99.8 1.3E-17 4.6E-22 162.0 26.9 225 112-417 3-253 (273)
60 4abn_A Tetratricopeptide repea 99.8 5.9E-19 2E-23 185.4 18.1 206 35-256 83-318 (474)
61 4i17_A Hypothetical protein; T 99.8 1.7E-17 5.7E-22 156.5 25.9 202 17-267 4-217 (228)
62 3e4b_A ALGK; tetratricopeptide 99.8 3.2E-18 1.1E-22 178.6 22.8 344 19-447 34-420 (452)
63 2vq2_A PILW, putative fimbrial 99.8 1.3E-17 4.4E-22 156.6 24.8 209 112-386 5-217 (225)
64 1b89_A Protein (clathrin heavy 99.8 1.7E-18 5.7E-23 172.5 17.9 366 32-508 15-419 (449)
65 4gyw_A UDP-N-acetylglucosamine 99.8 3.5E-18 1.2E-22 186.2 21.6 174 15-215 4-179 (723)
66 4abn_A Tetratricopeptide repea 99.8 3E-18 1E-22 179.9 20.2 214 129-412 82-318 (474)
67 2ond_A Cleavage stimulation fa 99.8 4E-17 1.4E-21 161.5 26.1 217 37-264 33-275 (308)
68 3nf1_A KLC 1, kinesin light ch 99.8 1.4E-17 4.8E-22 165.0 22.4 229 14-262 21-310 (311)
69 4gyw_A UDP-N-acetylglucosamine 99.8 4E-18 1.4E-22 185.7 19.6 172 49-262 4-177 (723)
70 4i17_A Hypothetical protein; T 99.8 1.3E-16 4.5E-21 150.3 26.9 215 113-396 5-224 (228)
71 3qky_A Outer membrane assembly 99.8 1.2E-17 4.2E-22 161.0 20.1 201 14-250 9-252 (261)
72 3q15_A PSP28, response regulat 99.8 9.5E-17 3.3E-21 164.0 27.0 246 182-491 102-367 (378)
73 2ond_A Cleavage stimulation fa 99.8 4.8E-17 1.6E-21 161.0 23.2 222 164-453 33-275 (308)
74 3nf1_A KLC 1, kinesin light ch 99.8 1.5E-17 5.1E-22 164.8 19.3 269 50-383 23-310 (311)
75 1hz4_A MALT regulatory protein 99.8 4.5E-16 1.5E-20 158.8 30.6 317 55-492 15-352 (373)
76 1hz4_A MALT regulatory protein 99.8 1.3E-15 4.6E-20 155.2 33.3 295 116-492 15-325 (373)
77 4e6h_A MRNA 3'-END-processing 99.8 2.1E-15 7.2E-20 162.3 35.7 427 15-513 61-594 (679)
78 1b89_A Protein (clathrin heavy 99.7 9.4E-17 3.2E-21 160.0 21.7 360 21-443 33-412 (449)
79 3urz_A Uncharacterized protein 99.7 3.8E-17 1.3E-21 151.3 16.0 179 19-213 3-189 (208)
80 3qky_A Outer membrane assembly 99.7 1E-16 3.4E-21 154.6 19.6 214 145-406 11-252 (261)
81 2pzi_A Probable serine/threoni 99.7 3.8E-17 1.3E-21 179.3 18.2 172 31-245 402-583 (681)
82 1qqe_A Vesicular transport pro 99.7 1.4E-15 4.9E-20 148.9 23.5 206 156-417 46-271 (292)
83 1qqe_A Vesicular transport pro 99.7 2.3E-16 8E-21 154.6 17.6 206 35-264 32-274 (292)
84 2yhc_A BAMD, UPF0169 lipoprote 99.7 7.9E-16 2.7E-20 144.5 20.3 207 19-264 3-218 (225)
85 3dra_A Protein farnesyltransfe 99.7 2.8E-15 9.5E-20 145.1 24.4 238 20-269 32-298 (306)
86 3as5_A MAMA; tetratricopeptide 99.7 1.5E-15 5.2E-20 137.5 20.4 168 19-213 7-176 (186)
87 3urz_A Uncharacterized protein 99.7 5.4E-16 1.8E-20 143.5 17.6 184 53-263 3-190 (208)
88 4e6h_A MRNA 3'-END-processing 99.7 3.3E-13 1.1E-17 145.2 41.4 419 36-517 48-566 (679)
89 2pzi_A Probable serine/threoni 99.7 1.3E-15 4.5E-20 167.1 23.2 205 175-452 388-602 (681)
90 3dra_A Protein farnesyltransfe 99.7 2.4E-14 8.3E-19 138.5 26.8 228 151-447 36-286 (306)
91 3edt_B KLC 2, kinesin light ch 99.7 1.1E-15 3.6E-20 149.0 17.1 208 32-259 13-281 (283)
92 3edt_B KLC 2, kinesin light ch 99.7 6.3E-15 2.1E-19 143.4 22.2 236 160-448 14-281 (283)
93 3as5_A MAMA; tetratricopeptide 99.7 2.5E-15 8.5E-20 136.0 17.8 167 318-492 9-176 (186)
94 2r5s_A Uncharacterized protein 99.6 1.3E-15 4.3E-20 137.0 13.7 166 17-210 3-173 (176)
95 2yhc_A BAMD, UPF0169 lipoprote 99.6 4.9E-15 1.7E-19 139.0 18.1 203 114-383 3-216 (225)
96 4ga2_A E3 SUMO-protein ligase 99.6 9.4E-16 3.2E-20 133.5 11.9 143 27-196 4-149 (150)
97 4ga2_A E3 SUMO-protein ligase 99.6 6.7E-16 2.3E-20 134.4 10.5 132 121-267 3-137 (150)
98 3qou_A Protein YBBN; thioredox 99.6 8.1E-15 2.8E-19 143.0 18.6 167 17-210 114-284 (287)
99 3qou_A Protein YBBN; thioredox 99.6 2.4E-14 8.2E-19 139.6 19.7 169 50-258 113-283 (287)
100 4f3v_A ESX-1 secretion system 99.6 1.2E-14 4E-19 137.0 16.4 192 19-213 6-240 (282)
101 2ifu_A Gamma-SNAP; membrane fu 99.6 9.1E-15 3.1E-19 144.3 16.4 201 31-263 2-227 (307)
102 2r5s_A Uncharacterized protein 99.6 7.8E-15 2.7E-19 131.8 14.2 156 89-258 10-172 (176)
103 3dss_A Geranylgeranyl transfer 99.6 1E-12 3.6E-17 127.6 26.8 234 23-298 32-306 (331)
104 2ifu_A Gamma-SNAP; membrane fu 99.5 6.4E-13 2.2E-17 131.0 22.8 237 194-513 4-253 (307)
105 3gyz_A Chaperone protein IPGC; 99.5 1.2E-14 4.2E-19 125.6 8.1 114 136-264 23-138 (151)
106 2vsy_A XCC0866; transferase, g 99.5 1.5E-13 5E-18 148.4 18.4 154 33-213 2-160 (568)
107 4gco_A Protein STI-1; structur 99.5 1.1E-13 3.9E-18 116.0 13.7 108 143-265 7-116 (126)
108 4gco_A Protein STI-1; structur 99.5 1.1E-13 3.6E-18 116.2 13.1 103 111-213 9-113 (126)
109 3rjv_A Putative SEL1 repeat pr 99.5 5.4E-13 1.9E-17 123.5 18.6 172 37-212 3-199 (212)
110 3dss_A Geranylgeranyl transfer 99.5 3.9E-12 1.3E-16 123.6 24.4 244 127-425 41-315 (331)
111 3q7a_A Farnesyltransferase alp 99.5 7.1E-12 2.4E-16 122.2 25.7 233 160-467 67-344 (349)
112 2vsy_A XCC0866; transferase, g 99.5 6.1E-13 2.1E-17 143.6 18.4 154 99-267 3-165 (568)
113 1p5q_A FKBP52, FK506-binding p 99.5 8.2E-15 2.8E-19 146.3 2.7 132 112-258 144-293 (336)
114 3gyz_A Chaperone protein IPGC; 99.5 1.1E-12 3.6E-17 113.4 15.5 107 42-148 24-137 (151)
115 2fo7_A Synthetic consensus TPR 99.5 2E-12 6.8E-17 109.7 17.2 132 116-262 2-135 (136)
116 2c2l_A CHIP, carboxy terminus 99.5 4.4E-13 1.5E-17 130.1 13.7 193 17-259 1-199 (281)
117 4f3v_A ESX-1 secretion system 99.4 2E-13 6.7E-18 128.7 10.1 219 182-450 8-239 (282)
118 3mv2_B Coatomer subunit epsilo 99.4 1E-11 3.5E-16 118.6 21.8 246 26-355 19-291 (310)
119 3q7a_A Farnesyltransferase alp 99.4 1.9E-11 6.5E-16 119.2 23.9 245 21-267 54-340 (349)
120 2vgx_A Chaperone SYCD; alterna 99.4 4.1E-13 1.4E-17 116.3 10.7 116 135-265 7-124 (148)
121 3rjv_A Putative SEL1 repeat pr 99.4 4.1E-12 1.4E-16 117.6 18.0 174 71-261 3-199 (212)
122 3mv2_B Coatomer subunit epsilo 99.4 1.8E-11 6.1E-16 117.0 21.4 249 94-422 22-290 (310)
123 2qfc_A PLCR protein; TPR, HTH, 99.4 9.6E-12 3.3E-16 121.7 19.8 159 54-212 75-268 (293)
124 2vgx_A Chaperone SYCD; alterna 99.4 5.8E-13 2E-17 115.3 9.5 107 16-149 17-123 (148)
125 1p5q_A FKBP52, FK506-binding p 99.4 3.9E-13 1.3E-17 134.1 9.5 168 32-211 125-295 (336)
126 2qfc_A PLCR protein; TPR, HTH, 99.4 1.6E-11 5.5E-16 120.1 20.5 165 86-259 76-266 (293)
127 2c2l_A CHIP, carboxy terminus 99.4 1.8E-12 6.3E-17 125.7 13.4 101 113-213 2-104 (281)
128 4gcn_A Protein STI-1; structur 99.4 4.4E-12 1.5E-16 106.5 14.0 105 151-263 12-116 (127)
129 3gw4_A Uncharacterized protein 99.4 1.1E-11 3.6E-16 113.9 17.0 156 96-260 3-177 (203)
130 4b4t_Q 26S proteasome regulato 99.4 1.8E-10 6E-15 119.7 28.4 210 21-259 5-245 (434)
131 2fo7_A Synthetic consensus TPR 99.4 1.8E-11 6.3E-16 103.6 17.0 131 55-212 2-134 (136)
132 2uy1_A Cleavage stimulation fa 99.4 4E-09 1.4E-13 110.3 37.9 372 18-450 12-415 (493)
133 1a17_A Serine/threonine protei 99.4 1.4E-11 4.8E-16 108.9 16.7 133 114-259 12-146 (166)
134 1hh8_A P67PHOX, NCF-2, neutrop 99.4 7.6E-12 2.6E-16 116.0 15.3 147 116-264 7-155 (213)
135 2lni_A Stress-induced-phosphop 99.4 1.9E-11 6.5E-16 103.4 16.3 122 13-161 9-132 (133)
136 2xcb_A PCRH, regulatory protei 99.4 2.1E-12 7.3E-17 111.0 10.4 114 136-264 5-120 (142)
137 3u3w_A Transcriptional activat 99.4 2.4E-11 8.2E-16 118.9 18.8 161 90-259 80-266 (293)
138 1hh8_A P67PHOX, NCF-2, neutrop 99.4 1.5E-11 5.3E-16 113.9 16.2 128 56-213 8-153 (213)
139 3upv_A Heat shock protein STI1 99.3 1.5E-11 5.2E-16 103.2 14.3 100 114-213 3-104 (126)
140 4gcn_A Protein STI-1; structur 99.3 1.5E-11 5.1E-16 103.2 13.8 110 388-497 10-120 (127)
141 3upv_A Heat shock protein STI1 99.3 3.3E-11 1.1E-15 101.0 15.7 102 17-145 1-102 (126)
142 1dce_A Protein (RAB geranylger 99.3 3.4E-11 1.2E-15 128.0 19.0 183 24-248 32-244 (567)
143 2xcb_A PCRH, regulatory protei 99.3 8.8E-12 3E-16 107.1 11.7 115 338-453 5-120 (142)
144 2e2e_A Formate-dependent nitri 99.3 6.2E-12 2.1E-16 112.8 11.1 125 125-264 20-149 (177)
145 2lni_A Stress-induced-phosphop 99.3 2.9E-11 9.9E-16 102.3 14.5 119 112-245 13-133 (133)
146 2hr2_A Hypothetical protein; a 99.3 2.1E-11 7.1E-16 103.7 13.2 99 115-213 11-134 (159)
147 3u3w_A Transcriptional activat 99.3 1.1E-10 3.7E-15 114.2 20.3 169 321-490 79-267 (293)
148 2e2e_A Formate-dependent nitri 99.3 1.3E-11 4.5E-16 110.6 12.3 129 26-181 16-149 (177)
149 2fbn_A 70 kDa peptidylprolyl i 99.3 5.5E-12 1.9E-16 115.5 9.5 129 114-257 37-184 (198)
150 3sz7_A HSC70 cochaperone (SGT) 99.3 5.5E-11 1.9E-15 105.0 15.7 109 15-150 6-114 (164)
151 1a17_A Serine/threonine protei 99.3 1.1E-10 3.7E-15 103.1 17.6 132 54-212 13-148 (166)
152 3sz7_A HSC70 cochaperone (SGT) 99.3 6E-11 2E-15 104.8 15.5 100 114-213 10-111 (164)
153 2vyi_A SGTA protein; chaperone 99.3 8.1E-11 2.8E-15 99.0 15.0 121 15-162 7-129 (131)
154 2vyi_A SGTA protein; chaperone 99.3 8.8E-11 3E-15 98.8 15.2 118 114-246 11-130 (131)
155 2hr2_A Hypothetical protein; a 99.3 2.1E-11 7.3E-16 103.6 11.0 106 151-264 15-136 (159)
156 3gw4_A Uncharacterized protein 99.3 9.3E-11 3.2E-15 107.5 16.1 163 328-491 3-178 (203)
157 1hxi_A PEX5, peroxisome target 99.3 2.6E-11 8.8E-16 100.7 11.0 98 151-263 21-118 (121)
158 3q49_B STIP1 homology and U bo 99.3 9.6E-11 3.3E-15 99.8 14.5 102 112-213 6-109 (137)
159 2fbn_A 70 kDa peptidylprolyl i 99.3 9.2E-12 3.1E-16 114.0 8.5 166 32-209 16-185 (198)
160 1hxi_A PEX5, peroxisome target 99.3 4.1E-11 1.4E-15 99.5 11.4 98 116-213 18-117 (121)
161 1dce_A Protein (RAB geranylger 99.2 1.1E-10 3.6E-15 124.2 16.2 191 158-417 39-269 (567)
162 3ro3_A PINS homolog, G-protein 99.2 1.8E-10 6.2E-15 101.0 14.6 137 115-260 9-159 (164)
163 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 1.2E-11 4E-16 128.9 7.9 165 32-208 246-413 (457)
164 1na0_A Designed protein CTPR3; 99.2 4.3E-10 1.5E-14 93.6 15.8 115 115-244 9-125 (125)
165 2dba_A Smooth muscle cell asso 99.2 6.8E-10 2.3E-14 95.7 17.3 112 12-150 20-134 (148)
166 3rkv_A Putative peptidylprolyl 99.2 1.5E-10 5E-15 102.0 13.0 99 115-213 11-129 (162)
167 1na0_A Designed protein CTPR3; 99.2 7.9E-10 2.7E-14 91.9 16.3 119 50-195 4-125 (125)
168 3q49_B STIP1 homology and U bo 99.2 3.2E-10 1.1E-14 96.5 14.0 106 15-147 4-109 (137)
169 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 1.9E-10 6.5E-15 119.7 13.2 131 112-257 265-413 (457)
170 1elw_A TPR1-domain of HOP; HOP 99.1 9.6E-10 3.3E-14 90.4 14.6 99 115-213 4-104 (118)
171 2xev_A YBGF; tetratricopeptide 99.1 1E-09 3.5E-14 92.2 14.7 98 116-213 3-108 (129)
172 4b4t_Q 26S proteasome regulato 99.1 1.9E-09 6.6E-14 111.8 19.9 136 116-260 56-205 (434)
173 3rkv_A Putative peptidylprolyl 99.1 5.3E-10 1.8E-14 98.4 13.1 99 151-264 15-131 (162)
174 2dba_A Smooth muscle cell asso 99.1 8.2E-10 2.8E-14 95.2 14.0 102 112-213 25-131 (148)
175 2if4_A ATFKBP42; FKBP-like, al 99.1 7.5E-11 2.6E-15 117.5 7.9 136 114-264 178-333 (338)
176 2xev_A YBGF; tetratricopeptide 99.1 1.3E-09 4.6E-14 91.4 14.4 103 151-265 6-111 (129)
177 1wao_1 Serine/threonine protei 99.1 2.8E-11 9.4E-16 126.6 4.5 124 116-254 7-134 (477)
178 2kck_A TPR repeat; tetratricop 99.1 3.3E-10 1.1E-14 92.3 10.1 102 112-213 3-109 (112)
179 1elr_A TPR2A-domain of HOP; HO 99.1 5.9E-10 2E-14 93.7 11.3 98 115-212 4-110 (131)
180 1wao_1 Serine/threonine protei 99.1 1.6E-10 5.6E-15 120.7 9.3 126 19-171 5-134 (477)
181 2uy1_A Cleavage stimulation fa 99.1 1.7E-07 5.9E-12 97.9 32.0 111 33-186 7-128 (493)
182 2kck_A TPR repeat; tetratricop 99.1 5.4E-10 1.9E-14 91.0 10.4 106 145-263 2-110 (112)
183 1ihg_A Cyclophilin 40; ppiase 99.1 8.5E-10 2.9E-14 111.1 13.9 123 115-252 223-363 (370)
184 3k9i_A BH0479 protein; putativ 99.1 3.4E-10 1.1E-14 93.4 8.7 92 160-266 3-97 (117)
185 1elw_A TPR1-domain of HOP; HOP 99.1 1.7E-09 5.7E-14 88.9 12.9 110 319-429 6-116 (118)
186 2if4_A ATFKBP42; FKBP-like, al 99.1 1.1E-10 3.8E-15 116.3 6.4 150 54-213 179-331 (338)
187 3ro3_A PINS homolog, G-protein 99.0 1.8E-09 6.2E-14 94.5 12.3 139 352-491 10-160 (164)
188 1zu2_A Mitochondrial import re 99.0 6.2E-10 2.1E-14 94.4 8.6 91 159-264 14-125 (158)
189 1elr_A TPR2A-domain of HOP; HO 99.0 4.1E-09 1.4E-13 88.4 13.4 109 388-496 6-115 (131)
190 1zu2_A Mitochondrial import re 99.0 5E-10 1.7E-14 94.9 7.3 88 126-213 13-123 (158)
191 3k9i_A BH0479 protein; putativ 99.0 7.1E-10 2.4E-14 91.4 7.5 87 127-213 2-93 (117)
192 1ihg_A Cyclophilin 40; ppiase 98.9 5.2E-09 1.8E-13 105.3 13.1 90 114-203 272-363 (370)
193 3n71_A Histone lysine methyltr 98.9 1.5E-08 5.1E-13 105.0 15.6 131 121-258 315-463 (490)
194 2kat_A Uncharacterized protein 98.8 2E-08 6.7E-13 82.3 10.4 82 132-213 2-85 (115)
195 2l6j_A TPR repeat-containing p 98.8 4.5E-09 1.5E-13 85.4 5.3 92 115-206 4-103 (111)
196 2l6j_A TPR repeat-containing p 98.8 6E-09 2E-13 84.7 5.9 92 19-110 3-103 (111)
197 2kat_A Uncharacterized protein 98.8 2E-08 6.9E-13 82.2 9.1 84 164-262 2-85 (115)
198 3n71_A Histone lysine methyltr 98.7 2.4E-07 8.2E-12 95.9 16.2 101 152-259 314-422 (490)
199 1na3_A Designed protein CTPR2; 98.7 1.3E-07 4.5E-12 73.3 11.1 82 114-195 8-91 (91)
200 4g26_A Pentatricopeptide repea 98.6 8.5E-07 2.9E-11 92.6 18.6 178 320-503 29-220 (501)
201 4g26_A Pentatricopeptide repea 98.6 3.3E-06 1.1E-10 88.1 22.2 153 23-175 29-203 (501)
202 3ma5_A Tetratricopeptide repea 98.6 1.2E-07 4.2E-12 75.2 8.4 69 15-83 2-70 (100)
203 1na3_A Designed protein CTPR2; 98.6 4.5E-07 1.5E-11 70.2 11.4 66 18-83 7-72 (91)
204 3ma5_A Tetratricopeptide repea 98.6 2.6E-07 8.9E-12 73.2 10.0 69 145-213 3-73 (100)
205 1klx_A Cysteine rich protein B 98.6 7.7E-07 2.6E-11 75.3 13.3 112 129-261 9-128 (138)
206 2kc7_A BFR218_protein; tetratr 98.6 1E-07 3.6E-12 75.4 6.6 90 151-263 4-94 (99)
207 3u64_A Protein TP_0956; tetrat 98.5 2.8E-06 9.6E-11 78.9 16.0 179 35-213 47-272 (301)
208 3ly7_A Transcriptional activat 98.5 4.6E-06 1.6E-10 81.0 18.1 146 103-264 182-344 (372)
209 2kc7_A BFR218_protein; tetratr 98.5 2.4E-07 8.4E-12 73.2 7.3 63 23-85 3-66 (99)
210 1klx_A Cysteine rich protein B 98.4 2E-06 6.8E-11 72.7 11.8 107 101-211 11-127 (138)
211 3qww_A SET and MYND domain-con 98.4 1.3E-06 4.4E-11 88.9 11.5 93 160-259 311-411 (433)
212 3ly7_A Transcriptional activat 98.4 8.2E-06 2.8E-10 79.3 15.7 142 20-181 196-344 (372)
213 3qwp_A SET and MYND domain-con 98.3 6E-06 2E-10 84.2 15.0 114 122-242 294-425 (429)
214 3qww_A SET and MYND domain-con 98.3 4.5E-06 1.5E-10 84.9 12.7 92 126-217 309-418 (433)
215 3qwp_A SET and MYND domain-con 98.3 9.1E-06 3.1E-10 82.9 14.8 99 154-259 294-400 (429)
216 3ffl_A Anaphase-promoting comp 98.3 4.8E-06 1.6E-10 69.9 9.6 107 19-125 19-165 (167)
217 3bee_A Putative YFRE protein; 98.2 4.6E-06 1.6E-10 64.4 8.9 71 16-86 2-75 (93)
218 3bee_A Putative YFRE protein; 98.2 7.8E-06 2.7E-10 63.1 9.8 73 177-264 2-77 (93)
219 2v5f_A Prolyl 4-hydroxylase su 98.2 7.4E-06 2.5E-10 65.1 9.6 78 180-265 4-81 (104)
220 3u64_A Protein TP_0956; tetrat 98.2 3.3E-05 1.1E-09 71.8 14.1 84 402-492 179-272 (301)
221 1pc2_A Mitochondria fission pr 98.2 2.6E-05 9E-10 65.2 12.1 88 164-265 15-106 (152)
222 2v5f_A Prolyl 4-hydroxylase su 98.1 4.6E-05 1.6E-09 60.4 11.8 77 419-495 5-81 (104)
223 1pc2_A Mitochondria fission pr 98.0 2E-05 6.7E-10 65.9 9.2 83 131-213 14-103 (152)
224 3ffl_A Anaphase-promoting comp 97.8 0.00014 4.7E-09 61.2 9.5 110 321-430 24-166 (167)
225 1nzn_A CGI-135 protein, fissio 97.4 0.0014 5E-08 52.5 10.9 89 164-265 18-109 (126)
226 4h7y_A Dual specificity protei 97.4 0.0028 9.7E-08 51.9 12.6 125 111-275 9-139 (161)
227 4h7y_A Dual specificity protei 97.4 0.0039 1.3E-07 51.1 13.2 55 159-213 72-126 (161)
228 3txn_A 26S proteasome regulato 97.4 0.034 1.2E-06 55.0 22.5 161 356-518 104-281 (394)
229 1nzn_A CGI-135 protein, fissio 97.3 0.00086 3E-08 53.8 7.6 87 336-422 20-111 (126)
230 4ady_A RPN2, 26S proteasome re 97.2 0.43 1.5E-05 52.4 31.4 95 319-413 492-587 (963)
231 3mkq_A Coatomer beta'-subunit; 97.1 0.026 8.9E-07 63.1 21.2 100 28-141 607-707 (814)
232 3txn_A 26S proteasome regulato 97.1 0.28 9.4E-06 48.5 25.9 65 185-258 103-167 (394)
233 1qsa_A Protein (soluble lytic 96.9 0.62 2.1E-05 49.3 35.0 315 21-379 7-347 (618)
234 3mkq_A Coatomer beta'-subunit; 96.7 0.081 2.8E-06 59.1 20.6 96 97-207 611-707 (814)
235 3lvg_A Clathrin heavy chain 1; 96.7 6.2E-06 2.1E-10 81.3 -11.2 173 64-268 93-267 (624)
236 3kae_A CDC27, possible protein 96.7 0.2 6.9E-06 41.7 16.7 161 324-492 40-240 (242)
237 3o48_A Mitochondria fission 1 96.5 0.036 1.2E-06 44.5 11.4 75 177-265 36-113 (134)
238 3kae_A CDC27, possible protein 96.4 0.33 1.1E-05 40.5 20.5 185 23-212 5-239 (242)
239 3o48_A Mitochondria fission 1 96.4 0.022 7.6E-07 45.7 9.5 72 350-421 39-114 (134)
240 1qsa_A Protein (soluble lytic 96.3 1.4 4.6E-05 46.7 35.5 117 57-177 9-132 (618)
241 1y8m_A FIS1; mitochondria, unk 96.3 0.029 9.8E-07 45.7 9.4 72 350-421 38-113 (144)
242 3mkq_B Coatomer subunit alpha; 95.8 0.15 5.1E-06 43.7 12.4 128 360-518 14-141 (177)
243 4gns_B Protein CSD3, chitin bi 95.8 0.036 1.2E-06 59.7 10.4 114 128-256 261-397 (754)
244 3mkq_B Coatomer subunit alpha; 95.7 0.11 3.7E-06 44.5 11.1 48 29-81 14-61 (177)
245 4b4t_P 26S proteasome regulato 95.7 2.2 7.5E-05 43.3 25.4 157 353-510 139-310 (445)
246 3spa_A Mtrpol, DNA-directed RN 95.6 0.06 2E-06 59.3 11.2 102 320-421 130-236 (1134)
247 1y8m_A FIS1; mitochondria, unk 95.6 0.2 6.9E-06 40.8 11.5 72 416-493 36-110 (144)
248 3spa_A Mtrpol, DNA-directed RN 95.2 0.14 4.8E-06 56.4 12.5 95 116-211 128-231 (1134)
249 4gns_B Protein CSD3, chitin bi 95.1 0.046 1.6E-06 58.9 8.3 60 22-81 339-398 (754)
250 1zbp_A Hypothetical protein VP 95.1 0.2 6.9E-06 45.9 11.2 120 27-147 4-132 (273)
251 4b4t_P 26S proteasome regulato 94.7 1.9 6.4E-05 43.8 18.7 103 388-490 139-248 (445)
252 4fhn_B Nucleoporin NUP120; pro 94.6 1.6 5.4E-05 50.5 20.0 147 90-256 817-964 (1139)
253 1zbp_A Hypothetical protein VP 94.5 0.47 1.6E-05 43.5 12.1 120 325-451 5-132 (273)
254 4b4t_R RPN7, 26S proteasome re 93.9 0.27 9.1E-06 49.8 10.4 96 352-447 132-236 (429)
255 2ff4_A Probable regulatory pro 93.0 0.94 3.2E-05 45.1 12.7 62 152-213 176-237 (388)
256 2ff4_A Probable regulatory pro 92.6 0.33 1.1E-05 48.4 8.6 56 25-80 176-231 (388)
257 4b4t_R RPN7, 26S proteasome re 92.3 2.3 7.8E-05 43.0 14.5 101 151-260 135-238 (429)
258 4b4t_S RPN3, 26S proteasome re 92.3 0.6 2.1E-05 47.4 9.9 126 326-451 145-302 (523)
259 4b4t_S RPN3, 26S proteasome re 91.0 1.1 3.8E-05 45.5 10.3 119 30-148 146-303 (523)
260 2wpv_A GET4, UPF0363 protein Y 91.0 11 0.00037 35.8 20.7 86 404-489 118-217 (312)
261 4fhn_B Nucleoporin NUP120; pro 91.0 4.7 0.00016 46.5 17.0 141 356-504 817-982 (1139)
262 2qx5_A Nucleoporin NIC96; mRNA 89.8 2.8 9.7E-05 44.4 12.6 102 390-492 447-569 (661)
263 4ady_A RPN2, 26S proteasome re 89.2 30 0.001 38.2 42.7 44 151-196 234-277 (963)
264 3lpz_A GET4 (YOR164C homolog); 87.9 19 0.00065 34.3 28.8 26 179-204 134-159 (336)
265 2uwj_G Type III export protein 87.4 7.6 0.00026 29.1 9.8 81 27-110 13-93 (115)
266 3lpz_A GET4 (YOR164C homolog); 87.3 21 0.00072 34.1 23.0 69 418-488 135-215 (336)
267 3lvg_A Clathrin heavy chain 1; 86.9 0.00025 8.6E-09 70.2 -18.6 81 114-198 53-133 (624)
268 2ynq_A ESSB; membrane protein, 86.3 4.8 0.00016 33.2 9.0 89 22-113 10-101 (161)
269 2p58_C Putative type III secre 84.9 10 0.00036 28.4 11.7 83 25-110 12-94 (116)
270 2wpv_A GET4, UPF0363 protein Y 84.1 29 0.00099 32.8 28.3 143 19-205 12-158 (312)
271 4gq2_M Nucleoporin NUP120; bet 79.7 21 0.0007 40.2 14.2 109 89-211 814-927 (950)
272 2ynq_A ESSB; membrane protein, 78.9 15 0.00051 30.3 9.2 82 60-141 14-99 (161)
273 3t5v_B Nuclear mRNA export pro 77.2 25 0.00085 35.4 12.4 84 130-213 141-253 (455)
274 1wy6_A Hypothetical protein ST 75.1 15 0.00051 29.7 7.8 55 157-211 101-155 (172)
275 1ya0_A SMG-7 transcript varian 75.0 14 0.00046 37.8 10.0 67 183-264 154-220 (497)
276 1ya0_A SMG-7 transcript varian 73.9 15 0.00052 37.5 10.0 78 319-397 154-231 (497)
277 2uwj_G Type III export protein 71.8 29 0.001 26.0 9.0 69 58-141 26-94 (115)
278 2p58_C Putative type III secre 71.4 30 0.001 26.0 10.1 69 58-141 27-95 (116)
279 3esl_A Checkpoint serine/threo 70.9 42 0.0014 29.2 10.5 56 432-492 92-147 (202)
280 4gq2_M Nucleoporin NUP120; bet 64.9 56 0.0019 36.7 13.1 52 357-413 816-867 (950)
281 4b4t_O 26S proteasome regulato 61.0 84 0.0029 30.9 12.2 96 393-488 83-197 (393)
282 3ax2_A Mitochondrial import re 59.5 20 0.00068 25.3 5.1 32 465-496 22-53 (73)
283 3ph0_C ASCG; type III secretio 59.2 35 0.0012 22.4 5.8 43 31-74 17-60 (61)
284 3t5x_A PCI domain-containing p 56.6 28 0.00094 30.6 7.0 33 181-213 14-46 (203)
285 2cfu_A SDSA1; SDS-hydrolase, l 55.9 16 0.00054 39.1 6.3 50 20-69 449-498 (658)
286 2v6y_A AAA family ATPase, P60 55.3 20 0.00069 26.0 4.9 18 241-258 22-39 (83)
287 4a1g_A Mitotic checkpoint seri 54.8 84 0.0029 25.9 9.1 51 163-213 81-133 (152)
288 4b4t_O 26S proteasome regulato 52.4 1.5E+02 0.0053 28.9 12.5 22 356-377 132-153 (393)
289 3mv2_A Coatomer subunit alpha; 50.6 38 0.0013 31.9 7.1 31 19-49 113-143 (325)
290 3ax2_A Mitochondrial import re 49.9 44 0.0015 23.5 5.7 35 232-266 19-53 (73)
291 4aez_C MAD3, mitotic spindle c 49.2 1.2E+02 0.0041 26.8 9.7 61 151-213 120-182 (223)
292 3t5v_B Nuclear mRNA export pro 47.8 28 0.00095 35.0 6.2 71 422-492 179-253 (455)
293 4aez_C MAD3, mitotic spindle c 44.6 1.3E+02 0.0044 26.6 9.2 30 115-144 150-179 (223)
294 2ijq_A Hypothetical protein; s 43.8 96 0.0033 25.8 7.8 56 324-379 39-103 (161)
295 2wvi_A Mitotic checkpoint seri 43.6 1.4E+02 0.0049 24.9 9.5 32 114-145 95-126 (164)
296 2w2u_A Hypothetical P60 katani 43.4 54 0.0019 23.7 5.6 25 234-258 23-47 (83)
297 1om2_A Protein (mitochondrial 42.6 35 0.0012 25.5 4.4 29 185-213 24-52 (95)
298 1wfd_A Hypothetical protein 15 42.1 41 0.0014 25.0 4.9 19 240-258 25-43 (93)
299 2w2u_A Hypothetical P60 katani 41.7 87 0.003 22.6 6.5 29 21-49 20-48 (83)
300 1om2_A Protein (mitochondrial 41.4 40 0.0014 25.1 4.6 32 465-496 25-56 (95)
301 2vkj_A TM1634; membrane protei 40.5 1E+02 0.0035 22.3 6.5 32 181-212 53-84 (106)
302 3bu8_A Telomeric repeat-bindin 40.3 1.2E+02 0.004 26.6 7.9 39 152-190 119-157 (235)
303 3re2_A Predicted protein; meni 40.2 2E+02 0.0069 27.4 10.0 69 418-488 254-324 (472)
304 2v6y_A AAA family ATPase, P60 39.5 1E+02 0.0034 22.3 6.5 28 21-48 12-39 (83)
305 2v6x_A Vacuolar protein sortin 37.9 53 0.0018 23.8 4.9 19 240-258 23-41 (85)
306 3t5x_A PCI domain-containing p 37.9 2E+02 0.0069 24.9 10.0 86 20-110 14-104 (203)
307 4a1g_A Mitotic checkpoint seri 37.3 1.7E+02 0.0059 24.0 10.0 32 114-145 100-131 (152)
308 2rpa_A Katanin P60 ATPase-cont 36.7 36 0.0012 24.3 3.6 28 184-211 15-42 (78)
309 2rpa_A Katanin P60 ATPase-cont 36.4 36 0.0012 24.3 3.6 30 20-49 12-41 (78)
310 2ijq_A Hypothetical protein; s 36.3 1.6E+02 0.0056 24.4 8.1 61 20-80 32-101 (161)
311 2crb_A Nuclear receptor bindin 35.2 67 0.0023 23.6 4.7 28 461-488 16-43 (97)
312 2crb_A Nuclear receptor bindin 34.6 72 0.0025 23.5 4.8 30 182-211 16-45 (97)
313 4a5x_A MITD1, MIT domain-conta 34.6 51 0.0017 24.1 4.3 30 20-49 16-45 (86)
314 2vkj_A TM1634; membrane protei 33.3 1.4E+02 0.0047 21.7 8.4 56 90-145 17-83 (106)
315 2cpt_A SKD1 protein, vacuolar 33.1 71 0.0024 24.9 5.2 11 437-447 17-27 (117)
316 3u84_A Menin; MLL, JUND, ledgf 33.0 2.9E+02 0.0098 27.0 10.0 69 418-488 276-346 (550)
317 3mkr_B Coatomer subunit alpha; 32.5 99 0.0034 29.1 6.9 33 19-51 101-133 (320)
318 2yhe_A SEC-alkyl sulfatase; hy 36.8 11 0.00036 40.3 0.0 53 20-72 461-513 (668)
319 2qx5_A Nucleoporin NIC96; mRNA 30.4 5.1E+02 0.017 27.4 21.7 95 40-141 281-382 (661)
320 2kig_A Inositol polyphosphate 27.6 33 0.0011 27.1 2.2 21 573-597 134-155 (161)
321 1bpo_A Protein (clathrin); cla 27.4 4.8E+02 0.016 26.1 11.4 47 93-139 337-385 (494)
322 2yin_A DOCK2, dedicator of cyt 27.2 3.9E+02 0.013 26.5 10.7 30 423-452 96-125 (436)
323 2cwy_A Hypothetical protein TT 27.0 1.4E+02 0.0048 22.1 5.7 64 423-489 5-68 (94)
324 1wfd_A Hypothetical protein 15 26.8 69 0.0024 23.8 3.9 29 21-49 16-44 (93)
325 3f3f_C Nucleoporin NUP85; stru 26.6 5.4E+02 0.019 26.4 11.8 27 53-80 242-268 (570)
326 3uzd_A 14-3-3 protein gamma; s 26.2 3.6E+02 0.012 24.2 13.7 55 198-258 148-202 (248)
327 2v6x_A Vacuolar protein sortin 26.2 84 0.0029 22.7 4.3 28 21-48 14-41 (85)
328 1wy6_A Hypothetical protein ST 26.0 2.6E+02 0.009 22.6 15.2 142 20-176 7-154 (172)
329 3esl_A Checkpoint serine/threo 25.9 3.2E+02 0.011 23.6 15.1 68 180-261 79-146 (202)
330 2o8p_A 14-3-3 domain containin 25.8 3.5E+02 0.012 23.9 15.1 61 192-258 136-196 (227)
331 1o9d_A 14-3-3-like protein C; 25.8 3.8E+02 0.013 24.3 14.3 55 198-258 152-206 (260)
332 2npm_A 14-3-3 domain containin 25.4 3.8E+02 0.013 24.3 14.7 30 116-145 29-58 (260)
333 2wvi_A Mitotic checkpoint seri 25.2 3E+02 0.01 22.9 11.6 50 437-491 78-127 (164)
334 2dl1_A Spartin; SPG20, MIT, st 24.5 1.2E+02 0.004 23.6 4.8 34 195-258 17-50 (116)
335 2cpt_A SKD1 protein, vacuolar 23.5 94 0.0032 24.3 4.3 27 22-48 20-46 (117)
336 4gq4_A Menin; tumor suppressor 23.4 4.9E+02 0.017 25.5 9.8 69 418-488 261-331 (489)
337 2br9_A 14-3-3E, 14-3-3 protein 23.2 4E+02 0.014 23.7 14.7 55 198-258 147-201 (234)
338 4a5x_A MITD1, MIT domain-conta 23.0 1.2E+02 0.0042 22.0 4.6 26 233-258 19-44 (86)
339 3ph0_C ASCG; type III secretio 22.2 1.7E+02 0.0059 19.2 5.3 16 390-405 44-59 (61)
340 3re2_A Predicted protein; meni 22.0 2.2E+02 0.0075 27.2 6.9 48 200-257 276-323 (472)
341 3lxu_X Tripeptidyl-peptidase 2 21.9 9.7E+02 0.033 27.8 15.8 164 226-400 1103-1331(1354)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.8e-37 Score=319.95 Aligned_cols=376 Identities=13% Similarity=0.084 Sum_probs=343.4
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch---hhhHHHHHHHHHhCC
Q 005990 24 FTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF---DFNYLKAYCLYRQNR 100 (666)
Q Consensus 24 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~a~~~~~~g~ 100 (666)
+..+..++..|++++|+..+++++..+|++..++..++.++...|++++|+..++.+....| ..++.+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 35678889999999999999999999999999999999999999999999999999866544 578899999999999
Q ss_pred HHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhh
Q 005990 101 LDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLR 174 (666)
Q Consensus 101 ~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 174 (666)
+++|+..+++ .|++..++..+|.++...|++++|+..|++++..+|+... .+++.++...|++++|+..|++++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999987 6778899999999999999999999999999999999877 889999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHH
Q 005990 175 VKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYT 254 (666)
Q Consensus 175 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~ 254 (666)
..+|++..+++++|.++...|++++|+..|++++.+.|. ...++..+|.++...|++++|+..|+
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN---------------FLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999853 23689999999999999999999999
Q ss_pred HHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChH
Q 005990 255 DIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMD 334 (666)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~ 334 (666)
+++..+|.+.. ++.+++.++...|+++
T Consensus 228 ~al~~~p~~~~-----------------------------------------------------~~~~l~~~~~~~g~~~ 254 (388)
T 1w3b_A 228 RALSLSPNHAV-----------------------------------------------------VHGNLACVYYEQGLID 254 (388)
T ss_dssp HHHHHCTTCHH-----------------------------------------------------HHHHHHHHHHHTTCHH
T ss_pred HHHhhCcCCHH-----------------------------------------------------HHHHHHHHHHHcCCHH
Confidence 99999986641 1234488899999999
Q ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcC
Q 005990 335 QARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD 414 (666)
Q Consensus 335 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 414 (666)
+|+..+++++...|++..++..++.++...|++++|+..|++++...|.+.. ++..++.++...|++++|+.+++++++
T Consensus 255 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD-SLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999765 889999999999999999999999999
Q ss_pred CCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCC
Q 005990 415 IQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGR 475 (666)
Q Consensus 415 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 475 (666)
..| ++..+..++.+|...|++++|+..|+++++..| ....++..+|.++...|+
T Consensus 334 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-------~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-------TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-------TCHHHHHHHHHHHHHTCC
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------CCHHHHHhHHHHHHHccC
Confidence 999 788899999999999999999999999987643 333478889998887764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-36 Score=330.05 Aligned_cols=442 Identities=13% Similarity=0.077 Sum_probs=367.4
Q ss_pred CcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhh--ccchhhhHHHHHHH
Q 005990 18 PPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQ--KFTFDFNYLKAYCL 95 (666)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~a~~~ 95 (666)
.++..+...+..+...|++++|+.+|++++...|+ ..+++.++.+|...|++++|+.+|+++. ..++..++.++.+|
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 35667788889999999999999999999999985 4788999999999999999999999983 44567888999999
Q ss_pred HHhCCHHHHHHHHHh-cCCC-------------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHH
Q 005990 96 YRQNRLDEALESLKI-QENN-------------------PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INF 153 (666)
Q Consensus 96 ~~~g~~~~A~~~l~~-~~~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l 153 (666)
.+.|++++|+.+|++ .|.. ..+++.+|.+|.+.|++++|+.+|++++..+|++.. ..+
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 240 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 999999999999995 4544 788999999999999999999999999999998765 222
Q ss_pred --------------------------------------HHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhc
Q 005990 154 --------------------------------------VAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMN 195 (666)
Q Consensus 154 --------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 195 (666)
+..|...|++++|+..|++++.. |.+..+++.+|.+|...|
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTT
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhc
Confidence 22334578899999999999887 678889999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhh
Q 005990 196 KYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLV 275 (666)
Q Consensus 196 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~ 275 (666)
++++|+.+|++++...+.. ..++..++.++...|++++|+.+|++++...|.+...+......+.
T Consensus 320 ~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 384 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPYN---------------LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL 384 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTC---------------CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCccc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 9999999999999888532 1488999999999999999999999999999988765544433332
Q ss_pred hccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHH
Q 005990 276 ALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLL 355 (666)
Q Consensus 276 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 355 (666)
. ..++.++...+++++...+. ....+..++.++...|++++|+.+|+++....|++...+.
T Consensus 385 ~---~g~~~~A~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 445 (597)
T 2xpi_A 385 C---VNKISEARRYFSKSSTMDPQ----------------FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL 445 (597)
T ss_dssp H---TTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred H---hccHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence 2 23555777777665543221 1224566788899999999999999999999999999999
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCC------CCC--hhHHHHHHH
Q 005990 356 LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI------QHM--PATVATLVA 427 (666)
Q Consensus 356 ~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~------~~~--~~~~~~l~~ 427 (666)
.++.++...|++++|+.+|++++...|.+.. ++..++.++...|++++|+.+|+++++. .|+ ..++..++.
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 524 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALFQYDPL-LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence 9999999999999999999999999988665 8889999999999999999999998776 453 567889999
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCCh-HHHHHHHHhh
Q 005990 428 LKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI-EALVGLVTTS 503 (666)
Q Consensus 428 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~l~~l~~~~ 503 (666)
+|...|++++|...|+++++..|.+ ..++..+|.+|...|++++|..+|+++++.+|++ .....+..+|
T Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 525 AYRKLKMYDAAIDALNQGLLLSTND-------ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 9999999999999999998875322 2477888999999999999999999999999983 3444444443
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.6e-35 Score=305.40 Aligned_cols=367 Identities=15% Similarity=0.123 Sum_probs=330.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhccch---hhhHHHHHHHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCH
Q 005990 59 CKVVALIKADNIDDALSTIQSSQKFTF---DFNYLKAYCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEM 131 (666)
Q Consensus 59 ~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~a~~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~ 131 (666)
.+|..+++.|++++|+..+.++....| ..++.++.+++..|++++|...++. .|.+..+++.+|.++...|++
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 367889999999999999999865544 5677899999999999999998876 678899999999999999999
Q ss_pred HHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 005990 132 DACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARR 209 (666)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 209 (666)
++|+..|++++..+|++.. .+++.++...|++++|+..|++++..+|++..++..+|.++...|++++|+.+|++++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999877 89999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHH
Q 005990 210 IGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKK 289 (666)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~ 289 (666)
..|. ...++..+|.++...|++++|+..|++++..+|.+..
T Consensus 164 ~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------------ 204 (388)
T 1w3b_A 164 TQPN---------------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD------------------------ 204 (388)
T ss_dssp HCTT---------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH------------------------
T ss_pred hCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH------------------------
Confidence 8843 2368999999999999999999999999999886631
Q ss_pred hHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhH
Q 005990 290 LDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGK 369 (666)
Q Consensus 290 l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~ 369 (666)
.+.+++.++...|++++|+..+.+++...|++..++..++.++...|++++
T Consensus 205 -----------------------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 255 (388)
T 1w3b_A 205 -----------------------------AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255 (388)
T ss_dssp -----------------------------HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 123447888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 005990 370 AEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKW 448 (666)
Q Consensus 370 A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~ 448 (666)
|+..|++++...|++.. ++..++.++...|++++|+.+|+++++..| ++..+..++.++...|++++|+..|+++++.
T Consensus 256 A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 256 AIDTYRRAIELQPHFPD-AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHHHHTCSSCHH-HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999765 899999999999999999999999999998 8889999999999999999999999999876
Q ss_pred HHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC-hHHHHHHHH
Q 005990 449 WLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVT 501 (666)
Q Consensus 449 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~l~~l~~ 501 (666)
.|+ ...++..+|.++...|++++|+..|+++++.+|+ ..++..+..
T Consensus 335 ~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 335 FPE-------FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp CTT-------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred CCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHH
Confidence 432 3347889999999999999999999999999998 444444433
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.9e-33 Score=302.00 Aligned_cols=431 Identities=10% Similarity=0.016 Sum_probs=357.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch--hhhHHHHHHHHHhCCHHHHHHHHHhc---CCChhHHHHHHHHHH
Q 005990 52 SDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF--DFNYLKAYCLYRQNRLDEALESLKIQ---ENNPATMLLKSQILY 126 (666)
Q Consensus 52 ~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~a~~~~~~g~~~~A~~~l~~~---~~~~~~~~~la~~~~ 126 (666)
.+...|..++..+.+.|++++|+.+|+++....+ ..++.++.++...|++++|+.+++.. +.+..++..++.+|.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 4577899999999999999999999999865433 56678999999999999999999984 668999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhC----------------CChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHH
Q 005990 127 RSGEMDACVEFYQKLQKSK----------------IDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTA 188 (666)
Q Consensus 127 ~~g~~~~A~~~~~~~l~~~----------------p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 188 (666)
+.|++++|+.+|+++.... +.+.. ..++.+|...|++++|+..|++++..+|++..++..++
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 241 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV 241 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 9999999999998632222 11233 88899999999999999999999999999988887775
Q ss_pred H--------------------------------------HHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhh
Q 005990 189 C--------------------------------------SLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELA 230 (666)
Q Consensus 189 ~--------------------------------------~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 230 (666)
. +|...|++++|+.+|++++...+ + .
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----------~------~ 305 (597)
T 2xpi_A 242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEK----------S------S 305 (597)
T ss_dssp HTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGG----------C------H
T ss_pred HhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCc----------h------H
Confidence 4 34467889999999988876521 1 2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcC
Q 005990 231 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 310 (666)
Q Consensus 231 ~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~ 310 (666)
.+++.++.+|...|++++|+.+|++++..+|.+...+......+... .+..++...++.++...+.
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~----------- 371 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES---GEKNKLYLISNDLVDRHPE----------- 371 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhhCcc-----------
Confidence 58999999999999999999999999999998776554444443332 2444666666555433211
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHH
Q 005990 311 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL 390 (666)
Q Consensus 311 ~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 390 (666)
...++..++.++...|++++|+.+|++++...|++...+..++.++...|++++|+.+|++++...|.+.. ++.
T Consensus 372 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~ 445 (597)
T 2xpi_A 372 -----KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL-PYL 445 (597)
T ss_dssp -----SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH-HHH
T ss_pred -----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH-HHH
Confidence 12345667899999999999999999999999999999999999999999999999999999999998665 889
Q ss_pred HHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 005990 391 ARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASF 469 (666)
Q Consensus 391 ~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~ 469 (666)
.++.+|...|++++|+.+|+++++..| ++.++..++.+|.+.|++++|..+|+++++..+...........+|..+|.+
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 999999999999999999999999888 8889999999999999999999999999998775332222235688899999
Q ss_pred HHhCCChhhHHHHHHHHHHhcCC-hHHHHHHHHhh-ccCChhhHHHHHhcC
Q 005990 470 KLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEKRL 518 (666)
Q Consensus 470 ~~~~g~~~~A~~~~~~~l~~~p~-~~~l~~l~~~~-~~~d~~~a~~~~~~l 518 (666)
+...|++++|+.+|+++++.+|+ ...+..+..+| ...+.++|..+.+++
T Consensus 526 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 526 YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999997 55556666665 577888888876543
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-32 Score=293.80 Aligned_cols=413 Identities=14% Similarity=0.137 Sum_probs=286.4
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHh
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQ 98 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~ 98 (666)
.+..++..+..++..|+|++|+..|++++..+| ++.++..+|.+++..|++++|+..|+++....
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------- 69 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-------------- 69 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--------------
Confidence 467899999999999999999999999999999 68999999999999999999999999985443
Q ss_pred CCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHH---cCChhHHH------
Q 005990 99 NRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLIS---AGRASEVQ------ 167 (666)
Q Consensus 99 g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~---~g~~~~A~------ 167 (666)
|++..++..+|.++...|++++|+..|++++...|.+.. ..+...+.. .....+++
T Consensus 70 -------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (514)
T 2gw1_A 70 -------------PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTA 136 (514)
T ss_dssp -------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------
T ss_pred -------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444432222 000000000 00000000
Q ss_pred ----------------------------HHHHHhhh--------cCCChHHHHHHHHHHHHH---hcCHHHHHHHHHHHH
Q 005990 168 ----------------------------KTLDSLRV--------KATSSFELAYNTACSLAE---MNKYTEAEQLLLTAR 208 (666)
Q Consensus 168 ----------------------------~~~~~~~~--------~~~~~~~~~~~la~~~~~---~g~~~~A~~~l~~a~ 208 (666)
..+..... ..|++...++.+|.+++. .|++++|+.+|++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 137 TATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp --------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred HHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 00000000 114446666666666665 666777777777766
Q ss_pred H-----h--hhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCC
Q 005990 209 R-----I--GQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPK 281 (666)
Q Consensus 209 ~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 281 (666)
. + .+. ..+..+....+++.+|.++...|++++|+.+|++++..+|. ...+......+...+...
T Consensus 217 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~ 287 (514)
T 2gw1_A 217 RLFEEQLDKNNE--------DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDST 287 (514)
T ss_dssp HHHHHHTTTSTT--------CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCT
T ss_pred HHhhhhhccCcc--------ccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHH
Confidence 6 3 221 11111223356666677777777777777777777666665 333322222222222222
Q ss_pred ChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHH
Q 005990 282 DVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVL 361 (666)
Q Consensus 282 ~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~ 361 (666)
.+...++.++...+. ...++.+++.++...|++++|+..+++++...|++..++..+|.++
T Consensus 288 ---~A~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 348 (514)
T 2gw1_A 288 ---EYYNYFDKALKLDSN----------------NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLA 348 (514)
T ss_dssp ---TGGGHHHHHHTTCTT----------------CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHT
T ss_pred ---HHHHHHHHHhhcCcC----------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHH
Confidence 333333332222110 0123466688999999999999999999999999999999999999
Q ss_pred HhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-Chh------HHHHHHHHHHH---
Q 005990 362 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPA------TVATLVALKER--- 431 (666)
Q Consensus 362 ~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~------~~~~l~~~~~~--- 431 (666)
...|++++|+..|++++...|.+.. ++..++.++...|++++|+.++++++...| ++. .+..++.+|..
T Consensus 349 ~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (514)
T 2gw1_A 349 YRENKFDDCETLFSEAKRKFPEAPE-VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT 427 (514)
T ss_dssp TTTTCHHHHHHHHHHHHHHSTTCSH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred HHcCCHHHHHHHHHHHHHHcccCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999998765 889999999999999999999999988777 433 78999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCChHH
Q 005990 432 AGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEA 495 (666)
Q Consensus 432 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 495 (666)
.|++++|...|++++...|.. ..++..+|.++...|++++|...|++++..+|++..
T Consensus 428 ~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 428 VENFIEATNLLEKASKLDPRS-------EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp TTHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred cCCHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 999999999999999875332 247788999999999999999999999999998433
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=8.8e-32 Score=290.08 Aligned_cols=435 Identities=11% Similarity=0.023 Sum_probs=341.6
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch---hhhHHHHHHH
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF---DFNYLKAYCL 95 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~a~~~ 95 (666)
....++..+..++..|+|++|+..|++++..+|+++.++..+|.+++.+|++++|+..|+++....| ..++.+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999966544 5778999999
Q ss_pred HHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-----HHHHHHHHHcCChhHHHHHH
Q 005990 96 YRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-----INFVAGLISAGRASEVQKTL 170 (666)
Q Consensus 96 ~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~l~~~~~~~g~~~~A~~~~ 170 (666)
..+|++++|+..++....++.........+...+...+|+..|++++...|.... ......+....+.+.++..+
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 9999999999999753333333333344556666678999999999887665544 44555566777777787777
Q ss_pred HHhhhcCCChHHHHHHHHHHHH--------HhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHH
Q 005990 171 DSLRVKATSSFELAYNTACSLA--------EMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQL 242 (666)
Q Consensus 171 ~~~~~~~~~~~~~~~~la~~~~--------~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 242 (666)
.......+........++.++. ..|++++|+.+|++++...+.. .+.....+.++..+|.++..
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~--------~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVD--------DPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCC--------HHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCc--------chhhHHHHHHHHHHHHHHHh
Confidence 7766666665555555554433 3458889999999988887542 22334456789999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHH
Q 005990 243 LGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYAN 322 (666)
Q Consensus 243 ~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~ 322 (666)
.|++++|+..|++++..+|. .. .+..
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~-~~-----------------------------------------------------~~~~ 281 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPT-PN-----------------------------------------------------SYIF 281 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCC-HH-----------------------------------------------------HHHH
T ss_pred cccHHHHHHHHHHHHhcCCC-ch-----------------------------------------------------HHHH
Confidence 99999999999999998875 21 1123
Q ss_pred HHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCCh
Q 005990 323 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHP 402 (666)
Q Consensus 323 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~ 402 (666)
++.++...|++++|+..+.+++..+|++..++..+|.++...|++++|+..|++++...|.+.. ++..++.++...|++
T Consensus 282 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~g~~ 360 (537)
T 3fp2_A 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY-PYIQLACLLYKQGKF 360 (537)
T ss_dssp HHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSH-HHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCH
Confidence 3777888999999999999999999999999999999999999999999999999999998765 888999999999999
Q ss_pred hHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhC--------
Q 005990 403 FIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRH-------- 473 (666)
Q Consensus 403 ~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 473 (666)
++|+.+|+++++..| ++.++..++.+|...|++++|+..|++++...+.......... .+...|.++...
T Consensus 361 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~ 439 (537)
T 3fp2_A 361 TESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG-PLIGKATILARQSSQDPTQL 439 (537)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH-HHHHHHHHHHHHHTC----C
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH-HHHHHHHHHHHHhhccchhh
Confidence 999999999999888 7888999999999999999999999999999887654333322 344667888888
Q ss_pred --CChhhHHHHHHHHHHhcCC-hHHHHHHHHhh-ccCChhhHHHHHhc
Q 005990 474 --GREEDASHLFEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEKR 517 (666)
Q Consensus 474 --g~~~~A~~~~~~~l~~~p~-~~~l~~l~~~~-~~~d~~~a~~~~~~ 517 (666)
|++++|+.+|++++..+|+ ..++..+..++ ...+.+.|..+.++
T Consensus 440 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 440 DEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999999998 44555555555 56777888776554
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=4.7e-31 Score=277.65 Aligned_cols=383 Identities=13% Similarity=0.124 Sum_probs=314.9
Q ss_pred CCCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHH
Q 005990 14 SQPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAY 93 (666)
Q Consensus 14 ~~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~ 93 (666)
..+|.++..++..+..++..|++++|+.+|++++..+|++..+++.+|.++...|++++|+..|+++...
T Consensus 20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------- 89 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL---------- 89 (450)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----------
Confidence 3788889999999999999999999999999999999999999999999999999999999999988433
Q ss_pred HHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChh---H--------------HHHHHH
Q 005990 94 CLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSL---E--------------INFVAG 156 (666)
Q Consensus 94 ~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~--------------~~l~~~ 156 (666)
.|++..++..+|.++...|++++|+.+|++++...|++. . ..++.+
T Consensus 90 -----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 152 (450)
T 2y4t_A 90 -----------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALN 152 (450)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888889999999999999999999988888876 3 234677
Q ss_pred HHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHH
Q 005990 157 LISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQL 236 (666)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 236 (666)
+...|++++|+..|++++...|.+..+++.+|.+|...|++++|+.+|++++...+.. ..+++.+
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~l 217 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN---------------TEAFYKI 217 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC---------------HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999988432 2589999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHH
Q 005990 237 AYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQR 316 (666)
Q Consensus 237 a~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~ 316 (666)
|.+|...|++++|+..|++++...|.+....... ..+. .
T Consensus 218 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~-----------------~~~~------------------------~ 256 (450)
T 2y4t_A 218 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY-----------------KQVK------------------------K 256 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----------------HHHH------------------------H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHH-----------------HHHH------------------------H
Confidence 9999999999999999999999999875432211 0010 0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCc----hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHH
Q 005990 317 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSV----MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLAR 392 (666)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~l 392 (666)
.....+.+.++...|++++|+.++++++...|++. ..+..++.++...|++++|+..+++++..+|++.. ++..+
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~~l 335 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVN-ALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH-HHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH-HHHHH
Confidence 01123448889999999999999999999999875 36788899999999999999999999999998765 89999
Q ss_pred HHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHH------------HHHcC-----ChhHHHHHHHH-HHHHHHHhc
Q 005990 393 AQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVAL------------KERAG-----DIDGAAAVLDS-AIKWWLNAM 453 (666)
Q Consensus 393 a~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~------------~~~~g-----~~~~A~~~l~~-a~~~~~~~~ 453 (666)
+.++...|++++|+..|++++++.| ++.++..++.+ |...| +.+++...|++ ++.+.|+..
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999 78888888844 44445 56677888886 666666554
Q ss_pred cCcc---hHHHHHHHHHHHHHhCCChhhHH
Q 005990 454 TEDN---KLSVIMQEAASFKLRHGREEDAS 480 (666)
Q Consensus 454 ~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 480 (666)
.... .....+..++.+|..+||.+.+.
T Consensus 416 ~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 416 QNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred CCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3221 23345566777777777766543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=3.6e-30 Score=270.90 Aligned_cols=355 Identities=13% Similarity=0.064 Sum_probs=296.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCCh
Q 005990 36 FEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNP 115 (666)
Q Consensus 36 ~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~ 115 (666)
...+...+.+++..+|++..+++.+|.+++..|++++|+..|+++.. ..|.+.
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---------------------------~~p~~~ 60 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVD---------------------------GDPDNY 60 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------------HCTTCH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------------------------hCCccH
Confidence 34566778888889999999999999999999999999999998732 256778
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChH---HHHHHH---
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSF---ELAYNT--- 187 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l--- 187 (666)
.+++.+|.+++..|++++|+..|++++..+|++.. ..++.++...|++++|+..|++++..+|++. .++..+
T Consensus 61 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (450)
T 2y4t_A 61 IAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 99999999999999999999999999999998877 8899999999999999999999999999888 776555
Q ss_pred ---------HHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005990 188 ---------ACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 188 ---------a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~ 258 (666)
|.++...|++++|+.+|++++...+. + ..++..+|.+|...|++++|+.+|++++.
T Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 205 (450)
T 2y4t_A 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW----------D-----AELRELRAECFIKEGEPRKAISDLKAASK 205 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------C-----HHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------C-----hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66799999999999999999998843 2 25899999999999999999999999998
Q ss_pred hCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHH
Q 005990 259 RNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARE 338 (666)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~ 338 (666)
.+|.+.. ++.+++.++...|++++|+.
T Consensus 206 ~~~~~~~-----------------------------------------------------~~~~l~~~~~~~g~~~~A~~ 232 (450)
T 2y4t_A 206 LKNDNTE-----------------------------------------------------AFYKISTLYYQLGDHELSLS 232 (450)
T ss_dssp HHCSCHH-----------------------------------------------------HHHHHHHHHHHTTCHHHHHH
T ss_pred hCCCCHH-----------------------------------------------------HHHHHHHHHHHcCCHHHHHH
Confidence 8876631 12344888999999999999
Q ss_pred HHHhccccCCCCchHHHHH------------HHHHHhhCChhHHHHHHHHHHhhCCChh---HHHHHHHHHHHHHcCChh
Q 005990 339 LVAALPDMFPDSVMPLLLQ------------AAVLVRENKAGKAEELLGQFAEKLPDKS---KIILLARAQVAAAANHPF 403 (666)
Q Consensus 339 ~~~~~~~~~p~~~~~~~~~------------a~~~~~~g~~~~A~~~l~~~~~~~p~~~---~~~~~~la~~~~~~g~~~ 403 (666)
.+++++...|++...+..+ +.++...|++++|+.+|++++...|.+. ..++..++.++...|+++
T Consensus 233 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 233 EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 9999999999988776555 8899999999999999999999999854 236788999999999999
Q ss_pred HHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHH------------HHH
Q 005990 404 IAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAA------------SFK 470 (666)
Q Consensus 404 ~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~------------~~~ 470 (666)
+|+.+++++++..| ++.++..++.+|...|++++|...|+++++..|++. .++..++ .+|
T Consensus 313 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~~~~y 385 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ-------QIREGLEKAQRLLKQSQKRDYY 385 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH-------HHHHHHHHHHHHHHHHHSCCSG
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchH-------HHHHHHHHHHHHhhcccchhHH
Confidence 99999999999888 888999999999999999999999999998754332 2555666 345
Q ss_pred HhCC-----ChhhHHHHHHH-HHHhcCC
Q 005990 471 LRHG-----REEDASHLFEE-LVKTHGS 492 (666)
Q Consensus 471 ~~~g-----~~~~A~~~~~~-~l~~~p~ 492 (666)
...| +.+++...|++ ++..+|+
T Consensus 386 ~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 386 KILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp GGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 5555 66778999997 7888887
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.98 E-value=5.3e-29 Score=253.22 Aligned_cols=331 Identities=12% Similarity=0.120 Sum_probs=284.5
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHh
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQ 98 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~ 98 (666)
++..++..+..++..|+|++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------- 66 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--------------- 66 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------
Confidence 57789999999999999999999999999999999999999999999999999999999988433
Q ss_pred CCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---ChhH--HHH------------HHHHHHcC
Q 005990 99 NRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKI---DSLE--INF------------VAGLISAG 161 (666)
Q Consensus 99 g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~--~~l------------~~~~~~~g 161 (666)
.|.+..++..+|.++...|++++|+..|++++...| ++.. ..+ +.++...|
T Consensus 67 ------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 67 ------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA 134 (359)
T ss_dssp ------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ------------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 456677888889999999999999999999988888 5554 333 68889999
Q ss_pred ChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHH
Q 005990 162 RASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQ 241 (666)
Q Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 241 (666)
++++|+..|++++...|.+..+++.+|.++...|++++|+..|++++...+.. ..+++.+|.++.
T Consensus 135 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~ 199 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN---------------TEAFYKISTLYY 199 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC---------------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987432 258999999999
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHH
Q 005990 242 LLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYA 321 (666)
Q Consensus 242 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~ 321 (666)
..|++++|+..|++++...|.+...+... ..+. ......
T Consensus 200 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-----------------~~~~------------------------~~~~~~ 238 (359)
T 3ieg_A 200 QLGDHELSLSEVRECLKLDQDHKRCFAHY-----------------KQVK------------------------KLNKLI 238 (359)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHH-----------------HHHH------------------------HHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCccchHHHHHH-----------------HHHH------------------------HHHHHH
Confidence 99999999999999999999876422111 0010 011123
Q ss_pred HHHHHHHHcCChHHHHHHHHhccccCCCCch----HHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHH
Q 005990 322 NRVLLLLHANKMDQARELVAALPDMFPDSVM----PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 397 (666)
Q Consensus 322 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~ 397 (666)
..+.++...|++++|+..+++++...|++.. .+..+|.++...|++++|+..|++++..+|++.. ++..++.++.
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~ 317 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN-ALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH-HHHHHHHHHH
Confidence 4488899999999999999999999998763 3567889999999999999999999999998765 8999999999
Q ss_pred HcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcC
Q 005990 398 AANHPFIAAESLAKIPDIQH-MPATVATLVALKERAG 433 (666)
Q Consensus 398 ~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g 433 (666)
..|++++|+..|+++++..| ++.++..++.++...+
T Consensus 318 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999 7777777777766543
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.98 E-value=3.6e-30 Score=277.43 Aligned_cols=402 Identities=14% Similarity=0.104 Sum_probs=320.7
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYC 94 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~ 94 (666)
.+|.++..++..+..+...|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..|+ +....+.........
T Consensus 54 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~ 132 (537)
T 3fp2_A 54 LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEP 132 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------C
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHH
Confidence 4688899999999999999999999999999999999999999999999999999999999996 555555544444556
Q ss_pred HHHhCCHHHHHHHHHhcCC-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHH--------HHH
Q 005990 95 LYRQNRLDEALESLKIQEN-------NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFV--------AGL 157 (666)
Q Consensus 95 ~~~~g~~~~A~~~l~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~--------~~~ 157 (666)
+...+...+|+..++..-. ...........++...+...++..|.......+.... ..+. ...
T Consensus 133 ~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (537)
T 3fp2_A 133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL 212 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhH
Confidence 6666677788888876321 1111233344456677777777666554444443322 2222 222
Q ss_pred HHcCChhHHHHHHHHhhhcCCChHH-------HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhh
Q 005990 158 ISAGRASEVQKTLDSLRVKATSSFE-------LAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELA 230 (666)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 230 (666)
...|++++|+..|++++..+|++.+ +++.+|.++...|++++|+.+|++++.+.+. .
T Consensus 213 ~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~----------------~ 276 (537)
T 3fp2_A 213 VANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT----------------P 276 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------H
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC----------------c
Confidence 2346899999999999999998755 5778889999999999999999999998843 2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcC
Q 005990 231 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 310 (666)
Q Consensus 231 ~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~ 310 (666)
.+++.+|.++...|++++|+..|++++..+|.+..
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------------------------------------- 311 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP--------------------------------------------- 311 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH---------------------------------------------
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH---------------------------------------------
Confidence 58899999999999999999999999999886541
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHH
Q 005990 311 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL 390 (666)
Q Consensus 311 ~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 390 (666)
++.+++.++...|++++|+..+++++...|++..++..+|.++...|++++|+..|++++...|++.. ++.
T Consensus 312 --------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~ 382 (537)
T 3fp2_A 312 --------TYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE-VPT 382 (537)
T ss_dssp --------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH-HHH
T ss_pred --------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHH
Confidence 12344888999999999999999999999999999999999999999999999999999999999765 889
Q ss_pred HHHHHHHHcCChhHHHHHHhcCcCCCC-Ch------hHHHHHHHHHHHc----------CChhHHHHHHHHHHHHHHHhc
Q 005990 391 ARAQVAAAANHPFIAAESLAKIPDIQH-MP------ATVATLVALKERA----------GDIDGAAAVLDSAIKWWLNAM 453 (666)
Q Consensus 391 ~la~~~~~~g~~~~A~~~l~~~~~~~~-~~------~~~~~l~~~~~~~----------g~~~~A~~~l~~a~~~~~~~~ 453 (666)
.++.++...|++++|+..|+++++..| .+ ..+..++.+|... |++++|+.+|+++++..|...
T Consensus 383 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 462 (537)
T 3fp2_A 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999987665 22 2346678889998 999999999999998864332
Q ss_pred cCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCChH
Q 005990 454 TEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIE 494 (666)
Q Consensus 454 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 494 (666)
.++..+|.++...|++++|+.+|+++++.+|+..
T Consensus 463 -------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 463 -------QAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp -------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred -------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 4788999999999999999999999999999843
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-28 Score=262.21 Aligned_cols=396 Identities=14% Similarity=0.040 Sum_probs=273.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHH
Q 005990 54 EDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDA 133 (666)
Q Consensus 54 ~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~ 133 (666)
.+++..+|.+++..|+|++|+..|+++... .| +..++..+|.++...|++++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------------------------~p-~~~~~~~la~~~~~~g~~~~ 57 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL---------------------------KE-DPVFYSNLSACYVSVGDLKK 57 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---------------------------CC-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc---------------------------Cc-cHHHHHhHHHHHHHHhhHHH
Confidence 456666677777777777777776666322 23 57788899999999999999
Q ss_pred HHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhc---CHHH---------
Q 005990 134 CVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMN---KYTE--------- 199 (666)
Q Consensus 134 A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~--------- 199 (666)
|+..|++++..+|++.. ..++.++...|++++|+..|++++...|.+..........+.... ...+
T Consensus 58 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (514)
T 2gw1_A 58 VVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTAT 137 (514)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877 888999999999999999999998887754332222211111111 1111
Q ss_pred ------------------------------------------------HHHHHHHHHHhhhhhccCCCCChhhHhhhhhh
Q 005990 200 ------------------------------------------------AEQLLLTARRIGQETLTDDNFAEDDIEIELAP 231 (666)
Q Consensus 200 ------------------------------------------------A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 231 (666)
+...+..++..... ....+. ..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~----~~ 207 (514)
T 2gw1_A 138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK------RSPESY----DK 207 (514)
T ss_dssp -------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSS------CCTTHH----HH
T ss_pred HhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHh------hhhccH----HH
Confidence 11122222211100 000111 11
Q ss_pred HHHHHHHHHH-----HcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHH
Q 005990 232 IAVQLAYVQQ-----LLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARV 306 (666)
Q Consensus 232 ~~~~la~~~~-----~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 306 (666)
+...+-.+.. ..+..... ...|.+...+......+ ....++..+...+++++...+.
T Consensus 208 A~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~---~~~~~~~~A~~~~~~~l~~~~~------- 269 (514)
T 2gw1_A 208 ADESFTKAARLFEEQLDKNNEDE--------KLKEKLAISLEHTGIFK---FLKNDPLGAHEDIKKAIELFPR------- 269 (514)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCH--------HHHHHHHHHHHHHHHHH---HHSSCHHHHHHHHHHHHHHCCC-------
T ss_pred HHHHHHHHHHHhhhhhccCcccc--------ccChHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHhhCcc-------
Confidence 1111111111 10010000 00011111111111111 1123455677777665543221
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhH
Q 005990 307 LDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK 386 (666)
Q Consensus 307 l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 386 (666)
...+.+++.++...|++++|+..++.++...|++..++..++.++...|++++|+..|++++...|.+..
T Consensus 270 ----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 339 (514)
T 2gw1_A 270 ----------VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF 339 (514)
T ss_dssp ----------HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSH
T ss_pred ----------HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHH
Confidence 3456777999999999999999999999999999999999999999999999999999999999999765
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 005990 387 IILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQE 465 (666)
Q Consensus 387 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 465 (666)
++..++.++...|++++|+.+|+++++..| ++.++..++.+|...|++++|..+|++++...+...... ....++..
T Consensus 340 -~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~ 417 (514)
T 2gw1_A 340 -PYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY-VGIAPLVG 417 (514)
T ss_dssp -HHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS-SCSHHHHH
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH-HHHHHHHH
Confidence 899999999999999999999999999888 888899999999999999999999999999887653211 11226778
Q ss_pred HHHHHHh---CCChhhHHHHHHHHHHhcCC-hHHHHHHHHhh-ccCChhhHHHHHhc
Q 005990 466 AASFKLR---HGREEDASHLFEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEKR 517 (666)
Q Consensus 466 l~~~~~~---~g~~~~A~~~~~~~l~~~p~-~~~l~~l~~~~-~~~d~~~a~~~~~~ 517 (666)
+|.++.. .|++++|+..|++++..+|+ ...+..+..++ ...+.++|..+..+
T Consensus 418 l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 418 KATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 8999999 99999999999999999998 44445555555 56778888876554
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=6.4e-28 Score=245.20 Aligned_cols=311 Identities=10% Similarity=0.035 Sum_probs=266.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSL 191 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 191 (666)
+...++.+|.+++..|++++|+.+|++++..+|++.. .+++.++...|++++|+..|++++..+|++..+++.+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3567889999999999999999999999999988777 88899999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhhh---hhccCCCCChhhHhhhh-----hhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 005990 192 AEMNKYTEAEQLLLTARRIGQ---ETLTDDNFAEDDIEIEL-----APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLAD 263 (666)
Q Consensus 192 ~~~g~~~~A~~~l~~a~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~ 263 (666)
...|++++|+..|++++...+ ... +....+ ...+..+|.++...|++++|+.+|++++...|.+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 153 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEK--------EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD 153 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChH--------HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999998875 311 100000 1123445899999999999999999999998866
Q ss_pred HhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhc
Q 005990 264 ESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAAL 343 (666)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 343 (666)
.. ++.+++.++...|++++|+..++.+
T Consensus 154 ~~-----------------------------------------------------~~~~~~~~~~~~~~~~~A~~~~~~~ 180 (359)
T 3ieg_A 154 AE-----------------------------------------------------LRELRAECFIKEGEPRKAISDLKAA 180 (359)
T ss_dssp HH-----------------------------------------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hH-----------------------------------------------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 41 1234488899999999999999999
Q ss_pred cccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHH------------HHHHHHHHHcCChhHHHHHHhc
Q 005990 344 PDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL------------LARAQVAAAANHPFIAAESLAK 411 (666)
Q Consensus 344 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~------------~~la~~~~~~g~~~~A~~~l~~ 411 (666)
+...|++...++.+|.++...|++++|+..|++++...|++.. ++ ..++.++...|++++|+..+++
T Consensus 181 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 259 (359)
T 3ieg_A 181 SKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR-CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 259 (359)
T ss_dssp HTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchH-HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998654 22 2448889999999999999999
Q ss_pred CcCCCC-ChhH----HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHH
Q 005990 412 IPDIQH-MPAT----VATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEEL 486 (666)
Q Consensus 412 ~~~~~~-~~~~----~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 486 (666)
+++..| ++.. +..++.+|...|++++|+..|+++++..|.. ..++..+|.++...|++++|...|+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 260 VMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN-------VNALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 998888 5533 4578999999999999999999999875332 237889999999999999999999999
Q ss_pred HHhcCCh
Q 005990 487 VKTHGSI 493 (666)
Q Consensus 487 l~~~p~~ 493 (666)
++.+|++
T Consensus 333 ~~~~p~~ 339 (359)
T 3ieg_A 333 QEHNEND 339 (359)
T ss_dssp HTTCTTC
T ss_pred HhcCCCC
Confidence 9999984
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-26 Score=245.72 Aligned_cols=378 Identities=9% Similarity=-0.055 Sum_probs=257.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc---------ch---hhhHHHHHHHHHhCCHHHHHHHHHhc------
Q 005990 50 NPSDEDAMRCKVVALIKADNIDDALSTIQSSQKF---------TF---DFNYLKAYCLYRQNRLDEALESLKIQ------ 111 (666)
Q Consensus 50 ~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~---------~~---~~~~~~a~~~~~~g~~~~A~~~l~~~------ 111 (666)
.+.....+..+|.++..+|++++|+..|+++..+ .+ ..+..+|.+|+.+|++++|+..+++.
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 4444566777777777777777777777776332 11 23346777777777777777766641
Q ss_pred ------CCChhHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCChhH--HHHHHHHH---HcCChhHHHHHHHHhhhcCC
Q 005990 112 ------ENNPATMLLKSQILYRS--GEMDACVEFYQKLQKSKIDSLE--INFVAGLI---SAGRASEVQKTLDSLRVKAT 178 (666)
Q Consensus 112 ------~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~---~~g~~~~A~~~~~~~~~~~~ 178 (666)
+....++..+|.++... ++|++|+.+|++++..+|++.+ .+++.++. ..++.++|+..|++++..+|
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 22456777777776665 4799999999999999999888 55665543 46888999999999999999
Q ss_pred ChHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHH
Q 005990 179 SSFELAYNTACSLAE----MNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYT 254 (666)
Q Consensus 179 ~~~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~ 254 (666)
++..++.++|..+.. .|++++|+.+|++++...+.. ..++..+|.+|...|++++|+..|+
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV---------------TDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSC---------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH---------------HHHHHHHHHHHHHcCchHHHHHHHH
Confidence 999999999877655 467889999999999988542 2588999999999999999999999
Q ss_pred HHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChH
Q 005990 255 DIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMD 334 (666)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~ 334 (666)
++++.+|++..........+.. ..... ... .....+......+.++
T Consensus 272 ~al~~~p~~~~~~~~lg~~y~~------------~~~~~--------------~~~--------~~~~~~~~~~~~~~~~ 317 (472)
T 4g1t_A 272 KALEYIPNNAYLHCQIGCCYRA------------KVFQV--------------MNL--------RENGMYGKRKLLELIG 317 (472)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHH------------HHHHH--------------HHC--------------CHHHHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHH------------HHHHh--------------hhH--------HHHHHHHHHHHHhhHH
Confidence 9999999886543322111100 00000 000 0001122222334577
Q ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhH--HHHHHHHHH-HHHcCChhHHHHHHhc
Q 005990 335 QARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK--IILLARAQV-AAAANHPFIAAESLAK 411 (666)
Q Consensus 335 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~--~~~~~la~~-~~~~g~~~~A~~~l~~ 411 (666)
+|+..++.+...+|.+..++..+|.++...|++++|+.+|++++...|.+.. .+++.++.+ +...|++++|+..|++
T Consensus 318 ~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 318 HAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE 397 (472)
T ss_dssp HHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999998887432 234455544 4578999999999999
Q ss_pred CcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcC
Q 005990 412 IPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG 491 (666)
Q Consensus 412 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 491 (666)
++.+.|...... +....+..++++++...|... .++..+|.++...|++++|+++|+++++..|
T Consensus 398 al~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~-------~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 398 GVKINQKSREKE---------KMKDKLQKIAKMRLSKNGADS-------EALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CT-------THHHHHHHHHHHHHHCC--------------
T ss_pred HHhcCcccHHHH---------HHHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999988332211 112344556667766554332 2788999999999999999999999999887
Q ss_pred C
Q 005990 492 S 492 (666)
Q Consensus 492 ~ 492 (666)
.
T Consensus 462 ~ 462 (472)
T 4g1t_A 462 L 462 (472)
T ss_dssp -
T ss_pred C
Confidence 6
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=5.1e-26 Score=228.33 Aligned_cols=298 Identities=12% Similarity=0.063 Sum_probs=183.8
Q ss_pred CCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHH
Q 005990 17 PPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLY 96 (666)
Q Consensus 17 p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~ 96 (666)
|.++..++..+..++..|+|++|+.++++++..+|.+..++..++.++...|++++|+..++++..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-------------- 84 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD-------------- 84 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH--------------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH--------------
Confidence 444445555566666666666666666666666666655555566666666666666665555421
Q ss_pred HhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHh
Q 005990 97 RQNRLDEALESLKIQENNPATMLLKSQILYRSG-EMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSL 173 (666)
Q Consensus 97 ~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 173 (666)
..|.+..++..+|.++...| ++++|+.+|++++...|++.. ..++.++...|++++|+..|+++
T Consensus 85 -------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 151 (330)
T 3hym_B 85 -------------LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTA 151 (330)
T ss_dssp -------------HCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -------------hCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 24455666666666666666 666666666666665555444 55555555556666666666655
Q ss_pred hhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHH
Q 005990 174 RVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAY 253 (666)
Q Consensus 174 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~ 253 (666)
+...|++..+++.+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|
T Consensus 152 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~ 216 (330)
T 3hym_B 152 AQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED---------------PFVMHEVGVVAFQNGEWKTAEKWF 216 (330)
T ss_dssp HHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHcccHHHHHHHH
Confidence 55555555555555556666666666666665555555321 135555555555555555555555
Q ss_pred HHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCCh
Q 005990 254 TDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKM 333 (666)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~ 333 (666)
++++...+... ..
T Consensus 217 ~~a~~~~~~~~--------------------------------------------~~----------------------- 229 (330)
T 3hym_B 217 LDALEKIKAIG--------------------------------------------NE----------------------- 229 (330)
T ss_dssp HHHHHHHTTTS--------------------------------------------CS-----------------------
T ss_pred HHHHHHhhhcc--------------------------------------------cc-----------------------
Confidence 55554332110 00
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCc
Q 005990 334 DQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP 413 (666)
Q Consensus 334 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 413 (666)
...|....++..+|.++...|++++|+..|++++...|++.. ++..++.++...|++++|+.+|++++
T Consensus 230 -----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 230 -----------VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAS-TYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp -----------CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSH-HHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred -----------ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchH-HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 001445567778888888888888888888888888887654 77788888888888888888888888
Q ss_pred CCCC-ChhHHHHHHHHH-HHcCCh
Q 005990 414 DIQH-MPATVATLVALK-ERAGDI 435 (666)
Q Consensus 414 ~~~~-~~~~~~~l~~~~-~~~g~~ 435 (666)
+..| ++..+..++.++ ...|+.
T Consensus 298 ~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 298 GLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred ccCCCchHHHHHHHHHHHHHhCch
Confidence 8888 777777777777 345544
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.3e-26 Score=232.60 Aligned_cols=267 Identities=8% Similarity=-0.016 Sum_probs=233.4
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhhhccchhhhHHHHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKAD-NIDDALSTIQSSQKFTFDFNYLKAY 93 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~a~ 93 (666)
.+|.+...++..+..+...|++++|+.+++++++.+|+++.+++.+|.++...| ++++|+..|+++...
T Consensus 51 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~---------- 120 (330)
T 3hym_B 51 KDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL---------- 120 (330)
T ss_dssp HCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT----------
T ss_pred cCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----------
Confidence 456777778888899999999999999999999999999999999999999999 999999999988433
Q ss_pred HHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHH
Q 005990 94 CLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLD 171 (666)
Q Consensus 94 ~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 171 (666)
.|.+..++..+|.++...|++++|+..|++++...|++.. ..++.++...|++++|+..|+
T Consensus 121 -----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (330)
T 3hym_B 121 -----------------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS 183 (330)
T ss_dssp -----------------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5778899999999999999999999999999999988766 889999999999999999999
Q ss_pred HhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHH
Q 005990 172 SLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFG 251 (666)
Q Consensus 172 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~ 251 (666)
+++...|++..+++.+|.++...|++++|+.+|++++...+... +
T Consensus 184 ~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------------------~------ 228 (330)
T 3hym_B 184 QALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG-----------------------------N------ 228 (330)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS-----------------------------C------
T ss_pred HHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc-----------------------------c------
Confidence 99999999999999999999999999999999999999874310 0
Q ss_pred HHHHHHhhC-CCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHc
Q 005990 252 AYTDIIKRN-LADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHA 330 (666)
Q Consensus 252 ~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~ 330 (666)
... +... . ++.+++.++...
T Consensus 229 ------~~~~~~~~--------------------~---------------------------------~~~~la~~~~~~ 249 (330)
T 3hym_B 229 ------EVTVDKWE--------------------P---------------------------------LLNNLGHVCRKL 249 (330)
T ss_dssp ------SCTTTTCC--------------------H---------------------------------HHHHHHHHHHHT
T ss_pred ------cccccHHH--------------------H---------------------------------HHHHHHHHHHHh
Confidence 000 1110 0 224458889999
Q ss_pred CChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHH-HHcCChh
Q 005990 331 NKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA-AAANHPF 403 (666)
Q Consensus 331 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~-~~~g~~~ 403 (666)
|++++|+..+++++...|++..++..+|.++...|++++|+.+|+++++..|++.. ++..++.++ ...|+.+
T Consensus 250 g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF-SVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH-HHHHHHHHHHTTTTC--
T ss_pred cCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH-HHHHHHHHHHHHhCchh
Confidence 99999999999999999999999999999999999999999999999999999765 888888877 4556543
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=2.7e-24 Score=228.20 Aligned_cols=388 Identities=11% Similarity=0.003 Sum_probs=271.3
Q ss_pred CCcHHHHHHHHHHHhh----hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhhhcc-chhh
Q 005990 17 PPPIEDLFTSLNRHIE----RSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIK----ADNIDDALSTIQSSQKF-TFDF 87 (666)
Q Consensus 17 p~~~~~l~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~----~g~~~~A~~~~~~~~~~-~~~~ 87 (666)
+.++.+++..+..+.. .+++++|+.+++++++. +++.+++.+|.+|.. .+++++|+.+|+++... .+..
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a 113 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQA 113 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3456667777777666 67777777777777665 566777777777777 77777777777776443 3456
Q ss_pred hHHHHHHHHH----hCCHHHHHHHHHh--cCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCChhHHHHHHHH
Q 005990 88 NYLKAYCLYR----QNRLDEALESLKI--QENNPATMLLKSQILYR----SGEMDACVEFYQKLQKSKIDSLEINFVAGL 157 (666)
Q Consensus 88 ~~~~a~~~~~----~g~~~~A~~~l~~--~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~ 157 (666)
.+.++.+|.. .+++++|+..+++ ...++.+++.+|.+|.. .+++++|+.+|++++..+......+++.+|
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y 193 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMY 193 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6677777766 6677777777766 23466677777777766 667777777777776543111116677777
Q ss_pred HH----cCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhh
Q 005990 158 IS----AGRASEVQKTLDSLRVKATSSFELAYNTACSLAE----MNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIEL 229 (666)
Q Consensus 158 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 229 (666)
.. .+++++|+..|+++... .+..+++++|.+|.. .+++++|+.+|+++++....
T Consensus 194 ~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~---------------- 255 (490)
T 2xm6_A 194 SRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS---------------- 255 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH----------------
T ss_pred hcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH----------------
Confidence 66 67777777777776654 345677777777775 66777777777777655421
Q ss_pred hhHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhH
Q 005990 230 APIAVQLAYVQQL----LGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLAR 305 (666)
Q Consensus 230 ~~~~~~la~~~~~----~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 305 (666)
.+++.+|.+|.. .+++++|+.+|+++.+.. +.
T Consensus 256 -~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--~~----------------------------------------- 291 (490)
T 2xm6_A 256 -IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--NS----------------------------------------- 291 (490)
T ss_dssp -HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--CH-----------------------------------------
T ss_pred -HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--CH-----------------------------------------
Confidence 366677777776 677777777777766432 11
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHc-----CChHHHHHHHHhccccCCCCchHHHHHHHHHHhhC---ChhHHHHHHHHH
Q 005990 306 VLDLRLSPKQREAIYANRVLLLLHA-----NKMDQARELVAALPDMFPDSVMPLLLQAAVLVREN---KAGKAEELLGQF 377 (666)
Q Consensus 306 ~l~~~~~~~q~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~l~~~ 377 (666)
...++++.++... +++++|+.+++++.+. ++..+++.++.++...| ++++|+.+|+++
T Consensus 292 ------------~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a 357 (490)
T 2xm6_A 292 ------------DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKA 357 (490)
T ss_dssp ------------HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 1123446777776 8999999999998775 45678888999888756 889999999999
Q ss_pred HhhCCChhHHHHHHHHHHHHH----cCChhHHHHHHhcCcCCCCChhHHHHHHHHHHH----cCChhHHHHHHHHHHHHH
Q 005990 378 AEKLPDKSKIILLARAQVAAA----ANHPFIAAESLAKIPDIQHMPATVATLVALKER----AGDIDGAAAVLDSAIKWW 449 (666)
Q Consensus 378 ~~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~l~~a~~~~ 449 (666)
++.. + ..+++.++.+|.. .+++++|+.+|+++.+.. ++..+..|+.+|.. .+++++|..+|+++++..
T Consensus 358 ~~~~--~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 358 AAKG--E-KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHTT--C-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHCC--C-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8873 2 3488899999998 899999999999988754 57788899999998 899999999999999886
Q ss_pred HHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC
Q 005990 450 LNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 450 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
++. +.....+..++.++.. +.+.|.+...+.++..|+
T Consensus 434 ~~~----~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~ 470 (490)
T 2xm6_A 434 MNL----FGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAP 470 (490)
T ss_dssp CCH----HHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCH
T ss_pred CCC----cCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHH
Confidence 210 1112245455555432 455666667777766665
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=1.5e-26 Score=236.12 Aligned_cols=312 Identities=12% Similarity=-0.041 Sum_probs=250.1
Q ss_pred HHHHcCCHHHHHH-HHHHHHhhCCChhH------HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcC
Q 005990 124 ILYRSGEMDACVE-FYQKLQKSKIDSLE------INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNK 196 (666)
Q Consensus 124 ~~~~~g~~~~A~~-~~~~~l~~~p~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 196 (666)
++...|+|++|+. .|++++...|++.. .+++.++...|++++|+..|++++..+|++..+++.+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5666789999999 99998887776542 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhh
Q 005990 197 YTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVA 276 (666)
Q Consensus 197 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~ 276 (666)
+++|+.+|++++.+.+.. ..++..+|.++...|++++|+..|++++...|.+.........
T Consensus 114 ~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~---- 174 (368)
T 1fch_A 114 ELLAISALRRCLELKPDN---------------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE---- 174 (368)
T ss_dssp HHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------
T ss_pred HHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH----
Confidence 999999999999998532 2589999999999999999999999999999876422110000
Q ss_pred ccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCC--CchHH
Q 005990 277 LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD--SVMPL 354 (666)
Q Consensus 277 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~ 354 (666)
... .. .......+.+.++ ..|++++|+..+++++...|+ +..++
T Consensus 175 ~~~---------~~------------------------~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 175 GAG---------GA------------------------GLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp --------------------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred Hhh---------hh------------------------cccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 000 00 0000011224444 889999999999999999999 77899
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcC
Q 005990 355 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAG 433 (666)
Q Consensus 355 ~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g 433 (666)
..+|.++...|++++|+..|++++...|++.. ++..++.++...|++++|+.+|+++++..| ++.++..++.+|...|
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL-LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999765 899999999999999999999999999998 7888999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhccC----cchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHh
Q 005990 434 DIDGAAAVLDSAIKWWLNAMTE----DNKLSVIMQEAASFKLRHGREEDASHLFEELVKT 489 (666)
Q Consensus 434 ~~~~A~~~l~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 489 (666)
++++|...|++++...|..... .+....+|..+|.++...|++++|..++++.+..
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 9999999999999998765221 1122458889999999999999999999877654
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=3.8e-24 Score=227.05 Aligned_cols=363 Identities=10% Similarity=-0.031 Sum_probs=305.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhhhcc-chhhhHHHHHHHHH----hCCHHHHHHHHH
Q 005990 39 AVKVADQVLSTNPSDEDAMRCKVVALIK----ADNIDDALSTIQSSQKF-TFDFNYLKAYCLYR----QNRLDEALESLK 109 (666)
Q Consensus 39 A~~~~~~~l~~~p~~~~a~~~~~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~~a~~~~~----~g~~~~A~~~l~ 109 (666)
++..+.++.+ ++++++++.+|.+|.. .+++++|+..|+++... .+...+.+|.+|.. .+++++|+.+++
T Consensus 26 ~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 26 NLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp CHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 4555555544 5789999999999999 99999999999999654 46788899999999 999999999999
Q ss_pred h--cCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCChhHHHHHHHHHH----cCChhHHHHHHHHhhhcCCC
Q 005990 110 I--QENNPATMLLKSQILYR----SGEMDACVEFYQKLQKSKIDSLEINFVAGLIS----AGRASEVQKTLDSLRVKATS 179 (666)
Q Consensus 110 ~--~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 179 (666)
+ ...++.+++.+|.+|.. .+++++|+.+|++++..+......+++.+|.. .+++++|+..|+++... .
T Consensus 104 ~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~ 181 (490)
T 2xm6_A 104 KAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--G 181 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence 8 34588999999999999 89999999999999876432223899999988 78999999999999875 4
Q ss_pred hHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHH----cCChHHHHH
Q 005990 180 SFELAYNTACSLAE----MNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQL----LGNTQEAFG 251 (666)
Q Consensus 180 ~~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~ 251 (666)
+..+++++|.+|.. .+++++|+.+|+++.+.... .+++.+|.+|.. .+++++|+.
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~-----------------~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDE-----------------LGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-----------------HHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 78899999999998 89999999999999876522 488999999997 899999999
Q ss_pred HHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHH--
Q 005990 252 AYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLH-- 329 (666)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~-- 329 (666)
+|++++.... . . ..++++.++..
T Consensus 245 ~~~~a~~~~~--~--------------------~---------------------------------a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 245 LFSQSAEQGN--S--------------------I---------------------------------AQFRLGYILEQGL 269 (490)
T ss_dssp HHHHHHTTTC--H--------------------H---------------------------------HHHHHHHHHHHTT
T ss_pred HHHHHHHCCC--H--------------------H---------------------------------HHHHHHHHHHCCC
Confidence 9999885432 1 1 11333666666
Q ss_pred --cCChHHHHHHHHhccccCCCCchHHHHHHHHHHhh-----CChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcC--
Q 005990 330 --ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRE-----NKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN-- 400 (666)
Q Consensus 330 --~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-----g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g-- 400 (666)
.+++++|+.+|+++... ++..+.+.++.++... +++++|+.+|+++++..+. .+++.++.+|...|
T Consensus 270 ~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~---~a~~~lg~~y~~~g~~ 344 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA---TAQANLGAIYFRLGSE 344 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHSCCH
T ss_pred CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCc
Confidence 79999999999998765 5678889999999887 8999999999999987533 37889999999877
Q ss_pred -ChhHHHHHHhcCcCCCCChhHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHh---
Q 005990 401 -HPFIAAESLAKIPDIQHMPATVATLVALKER----AGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR--- 472 (666)
Q Consensus 401 -~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 472 (666)
++++|+.+|+++.+. .++..+..|+.+|.. .+++++|+.+|+++++.. . ..++..+|.+|..
T Consensus 345 ~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~------~---~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 345 EEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG------L---SAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------C---HHHHHHHHHHHHHTSS
T ss_pred ccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC------C---HHHHHHHHHHHHcCCC
Confidence 899999999999876 467788999999999 899999999999998742 1 2377789999998
Q ss_pred -CCChhhHHHHHHHHHHhcCC
Q 005990 473 -HGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 473 -~g~~~~A~~~~~~~l~~~p~ 492 (666)
.+++++|..+|+++++.+|+
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCC
Confidence 89999999999999999954
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=9.4e-26 Score=230.28 Aligned_cols=285 Identities=13% Similarity=0.022 Sum_probs=239.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLA 192 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 192 (666)
...++.+|.+++..|++++|+.+|++++...|++.. .+++.++...|++++|+..|++++..+|++..+++.+|.++.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 567889999999999999999999999999998877 889999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHHhhhhhccCCCCChh-hHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHH
Q 005990 193 EMNKYTEAEQLLLTARRIGQETLTDDNFAED-DIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAV 271 (666)
Q Consensus 193 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~ 271 (666)
..|++++|+..|++++.+.+........... .........+..++.++ ..|++++|+.+|++++..+|...
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~------- 215 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI------- 215 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC-------
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc-------
Confidence 9999999999999999988653211000000 00000011222566666 89999999999999999888631
Q ss_pred hhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCc
Q 005990 272 NNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV 351 (666)
Q Consensus 272 ~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 351 (666)
. ..++.+++.++...|++++|+..+++++...|++.
T Consensus 216 ----------~----------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 251 (368)
T 1fch_A 216 ----------D----------------------------------PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY 251 (368)
T ss_dssp ----------C----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ----------c----------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 0 01224458889999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-C-----------h
Q 005990 352 MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-M-----------P 419 (666)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~-----------~ 419 (666)
.++..+|.++...|++++|+..|++++...|.+.. ++..++.++...|++++|+..|++++...| . +
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR-SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 99999999999999999999999999999998765 899999999999999999999999988777 4 6
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 005990 420 ATVATLVALKERAGDIDGAAAVLDSAIKWWLNA 452 (666)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~ 452 (666)
.++..++.+|...|++++|..++.++++.++..
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 363 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDLSTLLTM 363 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHh
Confidence 789999999999999999999999888776543
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=1.5e-23 Score=224.82 Aligned_cols=404 Identities=10% Similarity=0.015 Sum_probs=309.1
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchh--hhHHHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFD--FNYLKA 92 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~a 92 (666)
.+|.++..++..+. +...|++++|..+|+++++.+|.+..+|..++..+.+.|++++|..+|+++....|. +++..+
T Consensus 8 ~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 8 ENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp HCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred hCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 46888999888887 477899999999999999999999999999999999999999999999999776553 444444
Q ss_pred -HHHHHhCCHHHHHH----HHHh-------cCCChhHHHHHHHHHHH---------cCCHHHHHHHHHHHHhhCCChhH-
Q 005990 93 -YCLYRQNRLDEALE----SLKI-------QENNPATMLLKSQILYR---------SGEMDACVEFYQKLQKSKIDSLE- 150 (666)
Q Consensus 93 -~~~~~~g~~~~A~~----~l~~-------~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~l~~~p~~~~- 150 (666)
++....|++++|.+ +|+. .+.+..+|...+.+... .|+++.|..+|++++. .|....
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~ 165 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIE 165 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHH
Confidence 23344677766655 4443 24567788888887765 7899999999999998 565422
Q ss_pred ---HHHHH-----------HH--HHcCChhHHHHHHHH------hhhc-----CCCh-------HHHHHHHHHHHHHh--
Q 005990 151 ---INFVA-----------GL--ISAGRASEVQKTLDS------LRVK-----ATSS-------FELAYNTACSLAEM-- 194 (666)
Q Consensus 151 ---~~l~~-----------~~--~~~g~~~~A~~~~~~------~~~~-----~~~~-------~~~~~~la~~~~~~-- 194 (666)
..+.. .+ ...+++..|...+.. .+.. .|.. ...|..........
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 11111 11 124567777776655 3321 3321 23444433322221
Q ss_pred --cCH----HHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHH-------cCChH-------HHHHHHH
Q 005990 195 --NKY----TEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQL-------LGNTQ-------EAFGAYT 254 (666)
Q Consensus 195 --g~~----~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~-------eA~~~~~ 254 (666)
++. ..|+..|++++..+|.. ..+|+.+|.++.. .|+++ +|+.+|+
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~p~~---------------~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVLGHH---------------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHHTTC---------------HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 232 47889999999998542 2589999999886 79987 9999999
Q ss_pred HHHh-hCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCCh
Q 005990 255 DIIK-RNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKM 333 (666)
Q Consensus 255 ~~l~-~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~ 333 (666)
+++. ..|.+.. ++.+++.++...|++
T Consensus 311 ~Al~~~~p~~~~-----------------------------------------------------l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 311 RAISTLLKKNML-----------------------------------------------------LYFAYADYEESRMKY 337 (530)
T ss_dssp HHTTTTCSSCHH-----------------------------------------------------HHHHHHHHHHHTTCH
T ss_pred HHHHHhCcccHH-----------------------------------------------------HHHHHHHHHHhcCCH
Confidence 9997 6776532 123347778889999
Q ss_pred HHHHHHHHhccccCCCCc-hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHH-HHHcCChhHHHHHHhc
Q 005990 334 DQARELVAALPDMFPDSV-MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV-AAAANHPFIAAESLAK 411 (666)
Q Consensus 334 ~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~-~~~~g~~~~A~~~l~~ 411 (666)
++|+.+|++++...|.+. .++...+.++.+.|++++|+.+|+++++..|.... .+...+.+ +...|++++|..+|++
T Consensus 338 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~-~~~~~a~~~~~~~~~~~~A~~~~e~ 416 (530)
T 2ooe_A 338 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH-VYVTAALMEYYCSKDKSVAFKIFEL 416 (530)
T ss_dssp HHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH-HHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH-HHHHHHHHHHHHcCChhHHHHHHHH
Confidence 999999999999999885 68888999999999999999999999998876433 45555544 3468999999999999
Q ss_pred CcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhc
Q 005990 412 IPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 490 (666)
Q Consensus 412 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 490 (666)
+++..| ++.+|..++.++...|+.++|..+|++++...+..+ .....+|...+.+....|+.+.+..++.++++..
T Consensus 417 al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~---~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 417 GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP---EKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG---GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999 899999999999999999999999999988642211 1234578777888899999999999999999999
Q ss_pred CC
Q 005990 491 GS 492 (666)
Q Consensus 491 p~ 492 (666)
|+
T Consensus 494 p~ 495 (530)
T 2ooe_A 494 RE 495 (530)
T ss_dssp HH
T ss_pred ch
Confidence 85
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=4.7e-25 Score=224.90 Aligned_cols=275 Identities=9% Similarity=-0.025 Sum_probs=230.8
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSL 191 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 191 (666)
+...++.+|.+++..|++++|+.+|++++..+|++.. .+++.++...|++++|+..|++++..+|++..+++++|.+|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456999999999999999999999999999998877 89999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHhHHHH
Q 005990 192 AEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA--DESSFAV 269 (666)
Q Consensus 192 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~--~~~~~~~ 269 (666)
...|++++|+.+|++++.+.+....... .......++..+|.++...|++++|+.+|++++..+|. +..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---- 214 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVK-----NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD---- 214 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC------------------------CCHHHHHHHHHHHHHHHHSCSSCCHH----
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHh-----hhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH----
Confidence 9999999999999999999865321000 00011234556799999999999999999999999886 321
Q ss_pred HHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCC
Q 005990 270 AVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD 349 (666)
Q Consensus 270 ~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~ 349 (666)
++.+++.++...|++++|+..+++++...|+
T Consensus 215 -------------------------------------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 245 (365)
T 4eqf_A 215 -------------------------------------------------LQTGLGVLFHLSGEFNRAIDAFNAALTVRPE 245 (365)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred -------------------------------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 1244588899999999999999999999999
Q ss_pred CchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCCC-----------
Q 005990 350 SVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHM----------- 418 (666)
Q Consensus 350 ~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~----------- 418 (666)
+..++..+|.++...|++++|+..|++++..+|++.. ++..++.++...|++++|+.+|++++++.|.
T Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 324 (365)
T 4eqf_A 246 DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR-SRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC----------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhh
Confidence 9999999999999999999999999999999999765 8999999999999999999999999887752
Q ss_pred --hhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005990 419 --PATVATLVALKERAGDIDGAAAVLDSAIK 447 (666)
Q Consensus 419 --~~~~~~l~~~~~~~g~~~~A~~~l~~a~~ 447 (666)
..++..++.++...|+.+.+.....+.+.
T Consensus 325 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 325 ISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp --CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 56789999999999999988887765443
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=1.2e-24 Score=221.98 Aligned_cols=278 Identities=11% Similarity=-0.033 Sum_probs=232.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELA 230 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 230 (666)
+.+|.++...|++++|+..|++++..+|++..+++.+|.++...|++++|+.+|++++.+.+.. .
T Consensus 69 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~ 133 (365)
T 4eqf_A 69 FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN---------------L 133 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------H
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---------------H
Confidence 8899999999999999999999999999999999999999999999999999999999998532 3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcC
Q 005990 231 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 310 (666)
Q Consensus 231 ~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~ 310 (666)
.++..+|.+|..+|++++|+.+|++++...|.+........
T Consensus 134 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~--------------------------------------- 174 (365)
T 4eqf_A 134 KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK--------------------------------------- 174 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------------------------------------------
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc---------------------------------------
Confidence 58999999999999999999999999998875431110000
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCC--CchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHH
Q 005990 311 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD--SVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII 388 (666)
Q Consensus 311 ~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~ 388 (666)
....+..+++.++...|++++|+.++++++..+|+ +..++..+|.++...|++++|+..|++++..+|++.. +
T Consensus 175 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~ 249 (365)
T 4eqf_A 175 ----GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS-L 249 (365)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-H
T ss_pred ----cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-H
Confidence 00112234477889999999999999999999999 7889999999999999999999999999999999765 8
Q ss_pred HHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCc-----chHHHH
Q 005990 389 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTED-----NKLSVI 462 (666)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~-----~~~~~~ 462 (666)
+..++.++...|++++|+..|+++++..| ++.++..++.+|...|++++|+.+|++++...|...... .....+
T Consensus 250 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 329 (365)
T 4eqf_A 250 WNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNI 329 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHH
Confidence 99999999999999999999999999999 788999999999999999999999999999987643321 112358
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHH
Q 005990 463 MQEAASFKLRHGREEDASHLFEELV 487 (666)
Q Consensus 463 ~~~l~~~~~~~g~~~~A~~~~~~~l 487 (666)
|..++.++...|+.+.|..+.++.+
T Consensus 330 ~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 330 WAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 8899999999999998887776533
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.8e-23 Score=221.26 Aligned_cols=334 Identities=11% Similarity=-0.002 Sum_probs=224.0
Q ss_pred CCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHhhhccch
Q 005990 16 PPPPIEDLFTSLNRHIERSEFEQAVKVADQVLST--------NPSDEDAMRCKVVALIKAD--NIDDALSTIQSSQKFTF 85 (666)
Q Consensus 16 ~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~a~~~~~~~~~~~g--~~~~A~~~~~~~~~~~~ 85 (666)
+|..+..+...+..+...|++++|+.++++++.+ .+..+.++..+|.++...| +|++|+..|+++....|
T Consensus 90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p 169 (472)
T 4g1t_A 90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169 (472)
T ss_dssp TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence 5666777788888888889999998888888875 2345677888887777654 68889999888866544
Q ss_pred ---hhhHHHHHHHHH---hCCHHHHHHHHHh----cCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCChhH-
Q 005990 86 ---DFNYLKAYCLYR---QNRLDEALESLKI----QENNPATMLLKSQILYR----SGEMDACVEFYQKLQKSKIDSLE- 150 (666)
Q Consensus 86 ---~~~~~~a~~~~~---~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~- 150 (666)
..+..++.+++. .++.++|++.+++ .|++..++..+|..+.. .|++++|+.+|++++..+|+...
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~ 249 (472)
T 4g1t_A 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDV 249 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHH
T ss_pred CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHH
Confidence 455566666554 4556667766654 67777777777766544 45677888888888888888777
Q ss_pred -HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHh-------------------cCHHHHHHHHHHHHHh
Q 005990 151 -INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEM-------------------NKYTEAEQLLLTARRI 210 (666)
Q Consensus 151 -~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~l~~a~~~ 210 (666)
.++|.+|...|++++|+..|++++..+|++..+++++|.+|... +.+++|+..|++++.+
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 78888888889999999999888888888888888888887643 3456777778888777
Q ss_pred hhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHh
Q 005990 211 GQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKL 290 (666)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l 290 (666)
.+.. ..++..+|.++...|++++|+.+|++++...+.+....
T Consensus 330 ~~~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~----------------------- 371 (472)
T 4g1t_A 330 NDNL---------------FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ----------------------- 371 (472)
T ss_dssp CTTT---------------CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH-----------------------
T ss_pred CCch---------------hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH-----------------------
Confidence 7432 24778888999999999999999998888776542100
Q ss_pred HHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHH-HHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhH
Q 005990 291 DRIKEKDMQNFQLARVLDLRLSPKQREAIYANRV-LLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGK 369 (666)
Q Consensus 291 ~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a-~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~ 369 (666)
.+..+.+ ..+...|++++|+..+.+++...|++.... +....
T Consensus 372 ---------------------------~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~----------~~~~~ 414 (472)
T 4g1t_A 372 ---------------------------LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE----------KMKDK 414 (472)
T ss_dssp ---------------------------HHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH----------HHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH----------HHHHH
Confidence 0111122 234567888888888888888888764322 22334
Q ss_pred HHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHH
Q 005990 370 AEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATL 425 (666)
Q Consensus 370 A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l 425 (666)
+..++++++..+|.+.. ++..+|.+|...|++++|+++|+++++..+ .|.....+
T Consensus 415 l~~~~~~~l~~~p~~~~-~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSE-ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHCC-CTT-HHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 55667777888888655 778888888888888888888888888777 56554443
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=1.3e-23 Score=210.37 Aligned_cols=272 Identities=11% Similarity=0.017 Sum_probs=238.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSL 191 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 191 (666)
+...++.+|..++..|++++|+.+|++++...|++.. ..++.++...|++++|+..|++++..+|++..+++.+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 3456789999999999999999999999999998877 88899999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHH--------------HH-HHHHcCChHHHHHHHHHH
Q 005990 192 AEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQL--------------AY-VQQLLGNTQEAFGAYTDI 256 (666)
Q Consensus 192 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------------a~-~~~~~g~~~eA~~~~~~~ 256 (666)
...|++++|+..|++++...+... .++..+ +. ++...|++++|+.+|+++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYE---------------QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTT---------------TC--------------------CCTTSHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccH---------------HHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence 999999999999999999886532 122222 44 588899999999999999
Q ss_pred HhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHH
Q 005990 257 IKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQA 336 (666)
Q Consensus 257 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A 336 (666)
+...|.+.. +...++.++...|++++|
T Consensus 165 ~~~~~~~~~-----------------------------------------------------~~~~la~~~~~~~~~~~A 191 (327)
T 3cv0_A 165 LEMNPNDAQ-----------------------------------------------------LHASLGVLYNLSNNYDSA 191 (327)
T ss_dssp HHHSTTCHH-----------------------------------------------------HHHHHHHHHHHTTCHHHH
T ss_pred HhhCCCCHH-----------------------------------------------------HHHHHHHHHHHhccHHHH
Confidence 988886531 123347888999999999
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCC
Q 005990 337 RELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ 416 (666)
Q Consensus 337 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 416 (666)
+..+++++...|++..++..+|.++...|++++|+..|++++...|++.. ++..++.++...|++++|+..|++++...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 192 AANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR-VMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998765 88999999999999999999999998877
Q ss_pred CC-------------hhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcc
Q 005990 417 HM-------------PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMT 454 (666)
Q Consensus 417 ~~-------------~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~ 454 (666)
|. +.++..++.++...|++++|..++++++..+++...
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 271 VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 75 567889999999999999999999999988876644
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=2.6e-23 Score=208.24 Aligned_cols=266 Identities=14% Similarity=0.039 Sum_probs=203.5
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHh
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQ 98 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~ 98 (666)
....++..+..++..|++++|+.+++++++.+|++..++..+|.++...|++++|+..|+++...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------------- 84 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------------- 84 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------
Confidence 45678999999999999999999999999999999999999999999999999999999998433
Q ss_pred CCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHH--------------HH-HHHHcC
Q 005990 99 NRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INF--------------VA-GLISAG 161 (666)
Q Consensus 99 g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l--------------~~-~~~~~g 161 (666)
.|.+..++..+|.++...|++++|+..|++++...|.+.. ..+ +. ++...|
T Consensus 85 ------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 85 ------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp ------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHH
T ss_pred ------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcc
Confidence 3556677888888888888888888888888887777665 222 33 466778
Q ss_pred ChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHH
Q 005990 162 RASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQ 241 (666)
Q Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 241 (666)
++++|+..|++++...|.+..+++.+|.++...|++++|+.+|++++...+.. ..++..+|.++.
T Consensus 153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~ 217 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD---------------AQLWNKLGATLA 217 (327)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888887431 257888888888
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHH
Q 005990 242 LLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYA 321 (666)
Q Consensus 242 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~ 321 (666)
..|++++|+..|++++...|.+.. .+.
T Consensus 218 ~~~~~~~A~~~~~~a~~~~~~~~~-----------------------------------------------------~~~ 244 (327)
T 3cv0_A 218 NGNRPQEALDAYNRALDINPGYVR-----------------------------------------------------VMY 244 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHH-----------------------------------------------------HHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHH-----------------------------------------------------HHH
Confidence 888888888888888887775531 112
Q ss_pred HHHHHHHHcCChHHHHHHHHhccccCCC------------CchHHHHHHHHHHhhCChhHHHHHHHHHHh
Q 005990 322 NRVLLLLHANKMDQARELVAALPDMFPD------------SVMPLLLQAAVLVRENKAGKAEELLGQFAE 379 (666)
Q Consensus 322 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~ 379 (666)
+++.++...|++++|...+++++...|+ +..++..++.++...|++++|...+++++.
T Consensus 245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3366667777777777777766666665 344445555555555555555555544433
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=4.4e-21 Score=205.63 Aligned_cols=411 Identities=13% Similarity=0.073 Sum_probs=292.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch---hhhHHHHHHHHHhCCHHHHHHHHHh----cCCCh
Q 005990 43 ADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF---DFNYLKAYCLYRQNRLDEALESLKI----QENNP 115 (666)
Q Consensus 43 ~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~a~~~~~~g~~~~A~~~l~~----~~~~~ 115 (666)
++++++.+|.+..+|..++. +.+.|++++|..+|+++....| .+++..+..+.+.|++++|..+|++ .| +.
T Consensus 2 le~al~~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhhHhhhCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 67889999999999999998 4889999999999999976544 6788999999999999999999998 35 56
Q ss_pred hHHHHHHHHH-HHcCCHHHHHH----HHHHHHhh---CCChhH--HHHHHHHHH---------cCChhHHHHHHHHhhhc
Q 005990 116 ATMLLKSQIL-YRSGEMDACVE----FYQKLQKS---KIDSLE--INFVAGLIS---------AGRASEVQKTLDSLRVK 176 (666)
Q Consensus 116 ~~~~~la~~~-~~~g~~~~A~~----~~~~~l~~---~p~~~~--~~l~~~~~~---------~g~~~~A~~~~~~~~~~ 176 (666)
.+|..++... ...|++++|.+ +|++++.. +|++.. ..++..... .|+++.|..+|++++..
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~ 159 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN 159 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc
Confidence 7888877544 45688877765 78887764 344333 344444433 68899999999999984
Q ss_pred CCCh-H-HHHHHHHHHH-------------HHhcCHHHHHHHHHHHHHhhhhhccC--CCCChhhH--hhhhhhHHHHHH
Q 005990 177 ATSS-F-ELAYNTACSL-------------AEMNKYTEAEQLLLTARRIGQETLTD--DNFAEDDI--EIELAPIAVQLA 237 (666)
Q Consensus 177 ~~~~-~-~~~~~la~~~-------------~~~g~~~~A~~~l~~a~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~la 237 (666)
|.. . ..|...+... ...++|..|...|......... +.. ..++|... ......+|....
T Consensus 160 -P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~-l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 160 -PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKG-LDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp -CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-CCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred -hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hccccccCCCCCChhHHHHHHHHHHHH
Confidence 543 2 2232222211 1345677787777664332211 100 00111100 001112333332
Q ss_pred HHHHHc----CCh----HHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhc
Q 005990 238 YVQQLL----GNT----QEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL 309 (666)
Q Consensus 238 ~~~~~~----g~~----~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~ 309 (666)
...... ++. ..++..|++++...|.+..++.
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~----------------------------------------- 276 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWY----------------------------------------- 276 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHH-----------------------------------------
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHH-----------------------------------------
Confidence 222221 232 4778889999988887753332
Q ss_pred CCCHHHHHHHHHHHHHHHHH-------cCChH-------HHHHHHHhccc-cCCCCchHHHHHHHHHHhhCChhHHHHHH
Q 005990 310 RLSPKQREAIYANRVLLLLH-------ANKMD-------QARELVAALPD-MFPDSVMPLLLQAAVLVRENKAGKAEELL 374 (666)
Q Consensus 310 ~~~~~q~~~~~~~~a~~~~~-------~~~~~-------~A~~~~~~~~~-~~p~~~~~~~~~a~~~~~~g~~~~A~~~l 374 (666)
+++.++.. .|+++ +|+.++++++. ..|++..+++.++.++...|++++|+.+|
T Consensus 277 ------------~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 277 ------------EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp ------------HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------HHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 22333332 57776 89999999997 78999999999999999999999999999
Q ss_pred HHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHH-HHHcCChhHHHHHHHHHHHHHHHh
Q 005990 375 GQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVAL-KERAGDIDGAAAVLDSAIKWWLNA 452 (666)
Q Consensus 375 ~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~-~~~~g~~~~A~~~l~~a~~~~~~~ 452 (666)
++++...|.+...++..++.++.+.|++++|..+|+++++..| ...++...+.+ +...|++++|..+|+++++..|++
T Consensus 345 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~ 424 (530)
T 2ooe_A 345 NRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI 424 (530)
T ss_dssp HHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC
Confidence 9999999986544888999999999999999999999999877 55555555555 346899999999999999987543
Q ss_pred ccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCCh-----HHHHHHHHh-hccCChhhHHHHHhc
Q 005990 453 MTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI-----EALVGLVTT-SAHVDVDKAESYEKR 517 (666)
Q Consensus 453 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~l~~l~~~-~~~~d~~~a~~~~~~ 517 (666)
. .+|..++.++...|+.++|..+|++++...|.+ .....++.- ..++|.+.+..+.++
T Consensus 425 ~-------~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 425 P-------EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp H-------HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3 388899999999999999999999999986541 133333332 246788877766443
No 27
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.91 E-value=1e-22 Score=198.12 Aligned_cols=241 Identities=9% Similarity=0.042 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccc--hh----hhHHHHH
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFT--FD----FNYLKAY 93 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~----~~~~~a~ 93 (666)
.+.++..+..++..|++++|+..++++++.+|++..++..+|.++...|++++|+..++++.... +. .++.+|.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999996632 23 3689999
Q ss_pred HHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHH
Q 005990 94 CLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQ 167 (666)
Q Consensus 94 ~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~ 167 (666)
++...|++++|+..+++ .|.+..++..+|.++...|++++|+.+|++++..+|.+.. .+++..+...+++++|+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 6778999999999999999999999999999999998877 77884455566999999
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcC
Q 005990 168 KTLDSLRVKATSSFELAYNTACSLAEMNK---YTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLG 244 (666)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 244 (666)
..|++++...|++..+++.+|.++...|+ +++|+..|++++.+...... +. ...+..++..+|.+|...|
T Consensus 163 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~--~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 163 SSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA-----KY--KDELIEANEYIAYYYTINR 235 (272)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG-----GG--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc-----cc--hHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999 99999999999999743211 11 2335578999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCHhHH
Q 005990 245 NTQEAFGAYTDIIKRNLADESSF 267 (666)
Q Consensus 245 ~~~eA~~~~~~~l~~~~~~~~~~ 267 (666)
++++|+.+|++++..+|++....
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 236 DKVKADAAWKNILALDPTNKKAI 258 (272)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHhcCccHHHHH
Confidence 99999999999999999987433
No 28
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.91 E-value=2.7e-23 Score=210.06 Aligned_cols=252 Identities=7% Similarity=0.011 Sum_probs=217.3
Q ss_pred cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCC-hhHHHHHHHHhhhcCCChHHHHHHH
Q 005990 111 QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGR-ASEVQKTLDSLRVKATSSFELAYNT 187 (666)
Q Consensus 111 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l 187 (666)
.|++..++..+|.++...|++++|+..|++++..+|++.. .+++.++...|+ +++|+..|++++..+|+++.+|+++
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~ 172 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 3446788999999999999999999999999999999888 889999999997 9999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHH
Q 005990 188 ACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSF 267 (666)
Q Consensus 188 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~ 267 (666)
|.++...|++++|+.+|++++.+++.. ..+|+.+|.++..+|++++|+..|++++.++|.+...
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~---------------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a- 236 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKN---------------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSV- 236 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHH-
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH-
Confidence 999999999999999999999999542 3699999999999999999999999999999977522
Q ss_pred HHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHH-cCChHHH-----HHHHH
Q 005990 268 AVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLH-ANKMDQA-----RELVA 341 (666)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~-~~~~~~A-----~~~~~ 341 (666)
+++++.++.. .|.+++| +.++.
T Consensus 237 ----------------------------------------------------~~~lg~~l~~l~~~~~eA~~~~el~~~~ 264 (382)
T 2h6f_A 237 ----------------------------------------------------WNQRYFVISNTTGYNDRAVLEREVQYTL 264 (382)
T ss_dssp ----------------------------------------------------HHHHHHHHHHTTCSCSHHHHHHHHHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 1333666666 4554777 58899
Q ss_pred hccccCCCCchHHHHHHHHHHhhC--ChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcC--------C-hhHHHHHHh
Q 005990 342 ALPDMFPDSVMPLLLQAAVLVREN--KAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN--------H-PFIAAESLA 410 (666)
Q Consensus 342 ~~~~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g--------~-~~~A~~~l~ 410 (666)
+++..+|++..+++.++.++...| ++++|+..+..+ +..|++.. ++..++.+|...| + +++|+.+|+
T Consensus 265 ~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~-al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~ 342 (382)
T 2h6f_A 265 EMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPY-LIAFLVDIYEDMLENQCDNKEDILNKALELCE 342 (382)
T ss_dssp HHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHH-HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHH-HHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 999999999999999999999888 689999999888 88888665 8889999998874 3 589999999
Q ss_pred cC-cCCCC-ChhHHHHHHHHHHHc
Q 005990 411 KI-PDIQH-MPATVATLVALKERA 432 (666)
Q Consensus 411 ~~-~~~~~-~~~~~~~l~~~~~~~ 432 (666)
++ ++++| ....|..++..+...
T Consensus 343 ~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 343 ILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhCchhHHHHHHHHHHHHHH
Confidence 99 89999 778887777766543
No 29
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.91 E-value=7.9e-23 Score=206.63 Aligned_cols=255 Identities=11% Similarity=-0.020 Sum_probs=218.0
Q ss_pred CCCCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHhhhccchhhhHHH
Q 005990 13 PSQPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADN-IDDALSTIQSSQKFTFDFNYLK 91 (666)
Q Consensus 13 ~~~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~ 91 (666)
...+|.....++..+..+...|++++|+..++++|.++|++..+|+.+|.++..+|+ +++|+..|+++..+
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-------- 161 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-------- 161 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--------
Confidence 346788899999999999999999999999999999999999999999999999997 99999999998443
Q ss_pred HHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHH
Q 005990 92 AYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKT 169 (666)
Q Consensus 92 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~ 169 (666)
.|++..+|+.+|.++..+|++++|+..|++++..+|++.. .+++.++...|++++|+..
T Consensus 162 -------------------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~ 222 (382)
T 2h6f_A 162 -------------------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 222 (382)
T ss_dssp -------------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred -------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHH
Confidence 6778899999999999999999999999999999999988 9999999999999999999
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHH-hcCHHHH-----HHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHc
Q 005990 170 LDSLRVKATSSFELAYNTACSLAE-MNKYTEA-----EQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLL 243 (666)
Q Consensus 170 ~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 243 (666)
|++++..+|++..+|+++|.++.. .|.+++| +.+|++++.++|.. ..+|+.++.++...
T Consensus 223 ~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~---------------~~a~~~l~~ll~~~ 287 (382)
T 2h6f_A 223 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN---------------ESAWNYLKGILQDR 287 (382)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHcc
Confidence 999999999999999999999999 5655888 59999999999542 36999999999998
Q ss_pred C--ChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHH
Q 005990 244 G--NTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYA 321 (666)
Q Consensus 244 g--~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~ 321 (666)
| ++++|++.+.++ ..+|.+...+ .
T Consensus 288 g~~~~~~a~~~~~~~-~~~p~~~~al-----------------------------------------------------~ 313 (382)
T 2h6f_A 288 GLSKYPNLLNQLLDL-QPSHSSPYLI-----------------------------------------------------A 313 (382)
T ss_dssp CGGGCHHHHHHHHHH-TTTCCCHHHH-----------------------------------------------------H
T ss_pred CccchHHHHHHHHHh-ccCCCCHHHH-----------------------------------------------------H
Confidence 8 799999999887 7777654211 1
Q ss_pred HHHHHHHHcC---------ChHHHHHHHHhc-cccCCCCchHHHHHHHHHHh
Q 005990 322 NRVLLLLHAN---------KMDQARELVAAL-PDMFPDSVMPLLLQAAVLVR 363 (666)
Q Consensus 322 ~~a~~~~~~~---------~~~~A~~~~~~~-~~~~p~~~~~~~~~a~~~~~ 363 (666)
.++.++...| .+++|+.+|+++ .+.+|.....|..++..+..
T Consensus 314 ~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 314 FLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2244454442 247788888888 78888877777777665543
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=3e-22 Score=195.96 Aligned_cols=276 Identities=11% Similarity=0.073 Sum_probs=188.1
Q ss_pred HHHHHhhhccHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHH
Q 005990 26 SLNRHIERSEFEQAVKVADQVLSTNPSD-EDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEA 104 (666)
Q Consensus 26 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 104 (666)
.+..++..|+|..|+..++++...+|++ .++...++.+|+.+|++++|+..++..
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~------------------------ 60 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS------------------------ 60 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc------------------------
Confidence 3445566677777777766666666655 345566666777777777766655442
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCCh
Q 005990 105 LESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKS--KIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSS 180 (666)
Q Consensus 105 ~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 180 (666)
.+.+..++..++..+...|++++|++.|++++.. +|++.. +.+|.++...|++++|+..|++ |.+
T Consensus 61 ------~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~ 129 (291)
T 3mkr_A 61 ------SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS 129 (291)
T ss_dssp ------SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS
T ss_pred ------CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC
Confidence 1123456677788888888888888888888764 477666 7777778888888888887776 677
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHH--HHHHHcCChHHHHHHHHHHHh
Q 005990 181 FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLA--YVQQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 181 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~eA~~~~~~~l~ 258 (666)
.++++.+|.++..+|++++|+..|++++...|. +. ...+..+ .++...|++++|+.+|++++.
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~----------~~-----~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~ 194 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQDED----------AT-----LTQLATAWVSLAAGGEKLQDAYYIFQEMAD 194 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CH-----HHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC----------cH-----HHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 778888888888888888888888888887743 11 1111112 222334778888888888887
Q ss_pred hCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHH
Q 005990 259 RNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARE 338 (666)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~ 338 (666)
..|.+.. ++.+++.++...|++++|+.
T Consensus 195 ~~p~~~~-----------------------------------------------------~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 195 KCSPTLL-----------------------------------------------------LLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp HSCCCHH-----------------------------------------------------HHHHHHHHHHHTTCHHHHHH
T ss_pred hCCCcHH-----------------------------------------------------HHHHHHHHHHHcCCHHHHHH
Confidence 7775531 12344777778888888888
Q ss_pred HHHhccccCCCCchHHHHHHHHHHhhCChhH-HHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHH
Q 005990 339 LVAALPDMFPDSVMPLLLQAAVLVRENKAGK-AEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESL 409 (666)
Q Consensus 339 ~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~-A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l 409 (666)
.+++++..+|+++.++..++.++...|++.+ +..+++++++.+|+++. +..+..+.+.++++..-|
T Consensus 222 ~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~-----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 222 VLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF-----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHHHHHHHc
Confidence 8888888888888888888877777887765 45777788888887654 223455556666666555
No 31
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.90 E-value=2.4e-22 Score=207.80 Aligned_cols=309 Identities=11% Similarity=-0.009 Sum_probs=247.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH------HHHHHHHHHcCChhHHHHHHHHhhhc------CCChH
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE------INFVAGLISAGRASEVQKTLDSLRVK------ATSSF 181 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~ 181 (666)
....+..+|.+++..|++++|+.+|++++...|++.. ..++.++...|++++|+..|++++.. .+...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4567789999999999999999999999998887643 78899999999999999999988765 34567
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCC----------------
Q 005990 182 ELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGN---------------- 245 (666)
Q Consensus 182 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------- 245 (666)
.+++++|.++...|++++|+.+|++++.+.+... + ......++..+|.+|...|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--------D-KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------C-HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--------c-ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 7899999999999999999999999999986531 1 13345699999999999999
Q ss_pred ----hHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHH
Q 005990 246 ----TQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYA 321 (666)
Q Consensus 246 ----~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~ 321 (666)
+++|+.+|.+++..... .-.......++.
T Consensus 159 a~~~~~~A~~~~~~al~~~~~-----------------------------------------------~~~~~~~~~~~~ 191 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTA-----------------------------------------------LGDRAAQGRAFG 191 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------------------------------------------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh-----------------------------------------------ccCcHHHHHHHH
Confidence 78888777777643210 001112233456
Q ss_pred HHHHHHHHcCChHHHHHHHHhccccCCCCc------hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCCh-----hHHHHH
Q 005990 322 NRVLLLLHANKMDQARELVAALPDMFPDSV------MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-----SKIILL 390 (666)
Q Consensus 322 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~-----~~~~~~ 390 (666)
+++.++...|++++|+..+++++...+... .++..+|.++...|++++|+.+|++++...+.. ...++.
T Consensus 192 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 271 (406)
T 3sf4_A 192 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 271 (406)
T ss_dssp HHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHH
Confidence 779999999999999999999987755433 377888999999999999999999998765442 134778
Q ss_pred HHHHHHHHcCChhHHHHHHhcCcCCCC-------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHH
Q 005990 391 ARAQVAAAANHPFIAAESLAKIPDIQH-------MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIM 463 (666)
Q Consensus 391 ~la~~~~~~g~~~~A~~~l~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 463 (666)
.++.++...|++++|+.+|+++++..+ ...++..++.+|...|++++|..+|+++++..+... .......++
T Consensus 272 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~ 350 (406)
T 3sf4_A 272 SLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG-DKSGELTAR 350 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCcchhHHH
Confidence 899999999999999999999987644 245678899999999999999999999999876543 233445577
Q ss_pred HHHHHHHHhCCChhhH
Q 005990 464 QEAASFKLRHGREEDA 479 (666)
Q Consensus 464 ~~l~~~~~~~g~~~~A 479 (666)
..+|.++...|+...+
T Consensus 351 ~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 351 LNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHhhHhHHH
Confidence 7889999888877543
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.90 E-value=1.2e-22 Score=189.88 Aligned_cols=198 Identities=13% Similarity=0.086 Sum_probs=163.6
Q ss_pred CCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHH
Q 005990 17 PPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLY 96 (666)
Q Consensus 17 p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~ 96 (666)
|.+...++..+..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++...
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------------- 68 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR------------- 68 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Confidence 5667899999999999999999999999999999999999999999999999999999999998444
Q ss_pred HhCCHHHHHHHHHhcCCChhHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCCh
Q 005990 97 RQNRLDEALESLKIQENNPATMLLKSQILYRS-----------GEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRA 163 (666)
Q Consensus 97 ~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~ 163 (666)
.|++..++..+|.++... |++++|+..|++++..+|++.. .+++.++...|++
T Consensus 69 --------------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~ 134 (217)
T 2pl2_A 69 --------------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGER 134 (217)
T ss_dssp --------------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred --------------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh
Confidence 456677777777777777 9999999999999999998877 8899999999999
Q ss_pred hHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHc
Q 005990 164 SEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLL 243 (666)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 243 (666)
++|+..|++++..+ +++++++++|.++...|++++|+..|++++.+.|.. ..++..+|.++..+
T Consensus 135 ~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~~~~~la~~~~~~ 198 (217)
T 2pl2_A 135 DKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD---------------LDLRVRYASALLLK 198 (217)
T ss_dssp HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHc
Confidence 99999999999988 889999999999999999999999999999998542 25889999999999
Q ss_pred CChHHHHHHHHHHH
Q 005990 244 GNTQEAFGAYTDII 257 (666)
Q Consensus 244 g~~~eA~~~~~~~l 257 (666)
|++++|+..|+++-
T Consensus 199 g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 199 GKAEEAARAAALEH 212 (217)
T ss_dssp --------------
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998764
No 33
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.90 E-value=9.5e-22 Score=203.32 Aligned_cols=287 Identities=9% Similarity=-0.033 Sum_probs=194.5
Q ss_pred CCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHH
Q 005990 17 PPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSD----EDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKA 92 (666)
Q Consensus 17 p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a 92 (666)
......++..+..++..|++++|+.++++++...|++ ..++..+|.++...|++++|+..++++......
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------ 79 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART------ 79 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh------
Confidence 3467789999999999999999999999999999998 467889999999999999999999988332110
Q ss_pred HHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCh---hH-----HHHHHHHHHcCC--
Q 005990 93 YCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDS---LE-----INFVAGLISAGR-- 162 (666)
Q Consensus 93 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~-----~~l~~~~~~~g~-- 162 (666)
.++ .+....++..+|.++...|++++|+.+|++++...+.. .. .+++.++...|+
T Consensus 80 -----~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 144 (406)
T 3sf4_A 80 -----IGD----------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF 144 (406)
T ss_dssp -----TTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -----ccc----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcc
Confidence 000 11134567778888888888888888888877653321 11 666667777777
Q ss_pred ------------------hhHHHHHHHHhhhc------CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCC
Q 005990 163 ------------------ASEVQKTLDSLRVK------ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDD 218 (666)
Q Consensus 163 ------------------~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~ 218 (666)
+++|+..|++++.. .+....++.++|.++...|++++|+.+|++++.+.+...
T Consensus 145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--- 221 (406)
T 3sf4_A 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--- 221 (406)
T ss_dssp C-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT---
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC---
Confidence 77777777666543 233456788888888888888888888888888875421
Q ss_pred CCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhh
Q 005990 219 NFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDM 298 (666)
Q Consensus 219 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~ 298 (666)
+ ......++..+|.++..+|++++|+.+|++++...+...
T Consensus 222 -----~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------------- 261 (406)
T 3sf4_A 222 -----D-KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK---------------------------------- 261 (406)
T ss_dssp -----C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------------------------------
T ss_pred -----C-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc----------------------------------
Confidence 0 123345788888888888888888888888875543210
Q ss_pred hhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCC------chHHHHHHHHHHhhCChhHHHH
Q 005990 299 QNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS------VMPLLLQAAVLVRENKAGKAEE 372 (666)
Q Consensus 299 ~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~g~~~~A~~ 372 (666)
.......++.+++.++...|++++|...+++++...+.. ..++..+|.++...|++++|+.
T Consensus 262 -------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 262 -------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred -------------CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 000111223444666677777777777666665443221 2344555555555566666665
Q ss_pred HHHHHHhh
Q 005990 373 LLGQFAEK 380 (666)
Q Consensus 373 ~l~~~~~~ 380 (666)
+|++++..
T Consensus 329 ~~~~al~~ 336 (406)
T 3sf4_A 329 FAEKHLEI 336 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.6e-21 Score=185.40 Aligned_cols=222 Identities=11% Similarity=0.047 Sum_probs=201.2
Q ss_pred CcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccc----------hhh
Q 005990 18 PPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFT----------FDF 87 (666)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~----------~~~ 87 (666)
.....++..+..++..|+|++|+.+++++++.+ .+..++..+|.++...|++++|+..++++.... ...
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 456789999999999999999999999999999 889999999999999999999999999996543 356
Q ss_pred hHHHHHHHHHhCCHHHHHHHHHhcCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChh
Q 005990 88 NYLKAYCLYRQNRLDEALESLKIQEN-NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRAS 164 (666)
Q Consensus 88 ~~~~a~~~~~~g~~~~A~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~ 164 (666)
++.+|.++...|++++|+..+++... ++. +.++...|++++|+..|++++..+|++.. .+++.++...|+++
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 77999999999999999999987321 111 56788889999999999999998888777 89999999999999
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcC
Q 005990 165 EVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLG 244 (666)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 244 (666)
+|+..|++++..+|.+..+++++|.++...|++++|+.+|++++...+.. ..++..+|.++..+|
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF---------------VRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH---------------HHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998532 258999999999999
Q ss_pred ChHHHHHHHHHHHhhC
Q 005990 245 NTQEAFGAYTDIIKRN 260 (666)
Q Consensus 245 ~~~eA~~~~~~~l~~~ 260 (666)
++++|+..|+++++..
T Consensus 222 ~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 222 EYASALETLDAARTKD 237 (258)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999999998
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.88 E-value=6e-21 Score=199.22 Aligned_cols=350 Identities=12% Similarity=-0.003 Sum_probs=238.7
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHhhhccchhhhHHHHHHHHHhCC
Q 005990 24 FTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNI---DDALSTIQSSQKFTFDFNYLKAYCLYRQNR 100 (666)
Q Consensus 24 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~ 100 (666)
+..+..+++.|++++|+..|+++.+. +++++++.+|.+|...|++ ++|+.+|+++...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----------------- 67 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----------------- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC------------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----------------
Confidence 44677778888888888888888765 4667888888888888887 7888888877433
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHH---HHHHHH
Q 005990 101 LDEALESLKIQENNPATMLLKSQILYRSG-----EMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEV---QKTLDS 172 (666)
Q Consensus 101 ~~~A~~~l~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A---~~~~~~ 172 (666)
++.+++.+|.+++..+ ++++|+.+|++++..++.....+|+.+|...+...++ ...+..
T Consensus 68 -------------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~ 134 (452)
T 3e4b_A 68 -------------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQ 134 (452)
T ss_dssp ----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 3455666666555554 6777888888877755444447777777775554433 333333
Q ss_pred hhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcC---ChHHH
Q 005990 173 LRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLG---NTQEA 249 (666)
Q Consensus 173 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~eA 249 (666)
+.. +.+.++++++|.+|...+.++++.............. ...+++.||.+|...| ++++|
T Consensus 135 a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~--------------~~~a~~~Lg~~~~~~g~~~~~~~A 198 (452)
T 3e4b_A 135 WQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT--------------TDICYVELATVYQKKQQPEQQAEL 198 (452)
T ss_dssp HHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT--------------CTTHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC--------------CHHHHHHHHHHHHHcCCcccHHHH
Confidence 322 3346788999999999986666555543333332110 0138899999999999 99999
Q ss_pred HHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHH
Q 005990 250 FGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLH 329 (666)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~ 329 (666)
+.+|+++....+.+... .++++.+|..
T Consensus 199 ~~~~~~aa~~g~~~a~~-----------------------------------------------------~~~Lg~~y~~ 225 (452)
T 3e4b_A 199 LKQMEAGVSRGTVTAQR-----------------------------------------------------VDSVARVLGD 225 (452)
T ss_dssp HHHHHHHHHTTCSCHHH-----------------------------------------------------HHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHH-----------------------------------------------------HHHHHHHHhC
Confidence 99999999888765321 0222444433
Q ss_pred c----CChHHHHHHHHhccccCCCCchHHHHHHHH-H--HhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcC--
Q 005990 330 A----NKMDQARELVAALPDMFPDSVMPLLLQAAV-L--VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN-- 400 (666)
Q Consensus 330 ~----~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~-~--~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g-- 400 (666)
. +++++|+.+|+++. |+++.+++.+|.+ + ...+++++|+.+|+++++.. +. .+.+.++.+|. .|
T Consensus 226 g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~-~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 226 ATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QP-RAELLLGKLYY-EGKW 298 (452)
T ss_dssp GGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CH-HHHHHHHHHHH-HCSS
T ss_pred CCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CH-HHHHHHHHHHH-cCCC
Confidence 3 68899999999987 8899999999998 4 46899999999999998764 33 38889999988 55
Q ss_pred ---ChhHHHHHHhcCcCCCCChhHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHh-
Q 005990 401 ---HPFIAAESLAKIPDIQHMPATVATLVALKER----AGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR- 472 (666)
Q Consensus 401 ---~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~- 472 (666)
++++|+.+|+++. ..++.....||.+|.. ..++++|..+|+++.+.. ++. ....+|.+|..
T Consensus 299 ~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g------~~~---A~~~Lg~~y~~G 367 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG------QNS---ADFAIAQLFSQG 367 (452)
T ss_dssp SCCCHHHHHHHHHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT------CTT---HHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC------hHH---HHHHHHHHHHhC
Confidence 9999999999998 3388888999999887 348999999999987631 122 56688999874
Q ss_pred ---CCChhhHHHHHHHHHHhcCC
Q 005990 473 ---HGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 473 ---~g~~~~A~~~~~~~l~~~p~ 492 (666)
..++.+|..+|+.+.+..+.
T Consensus 368 ~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 368 KGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp TTBCCCHHHHHHHHHHHHTTCCH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCH
Confidence 45899999999999987654
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.88 E-value=1.5e-21 Score=189.93 Aligned_cols=245 Identities=13% Similarity=0.030 Sum_probs=134.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCCh----HHHHHHHHH
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSS----FELAYNTAC 189 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~ 189 (666)
..++.+|.+++..|++++|+..|++++..+|++.. ..++.++...|++++|+..|++++.. +.+ ..+++++|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHH
Confidence 44556666666666666666666666666665544 55555666666666666666665552 221 333566666
Q ss_pred HHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHH
Q 005990 190 SLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAV 269 (666)
Q Consensus 190 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~ 269 (666)
++...|++++|+.+|++++.+.+.. ..++..+|.+|...|++++|+..|++++..+|.+...
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--- 144 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTR---------------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV--- 144 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTC---------------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHH---
T ss_pred HHHHcccHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHH---
Confidence 6666666666666666666655321 1356666666666666666666666666555544211
Q ss_pred HHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCC
Q 005990 270 AVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD 349 (666)
Q Consensus 270 ~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~ 349 (666)
+.+++...+..+++++|+..+++++..+|+
T Consensus 145 --------------------------------------------------~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 145 --------------------------------------------------FYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp --------------------------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 112232223334666666666666666666
Q ss_pred CchHHHHHHHHHHhhCC---hhHHHHHHHHHHhhC---CCh----hHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-C
Q 005990 350 SVMPLLLQAAVLVRENK---AGKAEELLGQFAEKL---PDK----SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-M 418 (666)
Q Consensus 350 ~~~~~~~~a~~~~~~g~---~~~A~~~l~~~~~~~---p~~----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~ 418 (666)
+...++.++.++...|+ +++|+..|++++... |+. ...++..++.+|...|++++|+.+|+++++++| +
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH
Confidence 66666666666666555 555666666665543 221 113455556666666666666666666666555 5
Q ss_pred hhHHHHHHHHH
Q 005990 419 PATVATLVALK 429 (666)
Q Consensus 419 ~~~~~~l~~~~ 429 (666)
+..+..++.+.
T Consensus 255 ~~a~~~l~~~~ 265 (272)
T 3u4t_A 255 KKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHhhhhh
Confidence 55444444443
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=2.5e-21 Score=180.95 Aligned_cols=198 Identities=17% Similarity=0.170 Sum_probs=158.0
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHH
Q 005990 112 ENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTAC 189 (666)
Q Consensus 112 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 189 (666)
|.+..+++.+|.+++..|++++|+..|++++..+|++.. .+++.++...|++++|+..|++++..+|++..+++++|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 667889999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred HHHHh-----------cCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005990 190 SLAEM-----------NKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 190 ~~~~~-----------g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~ 258 (666)
++... |++++|+..|++++++.|.. ..+++.+|.++..+|++++|+..|++++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY---------------APLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 99999 99999999999999998542 25889999999999999999999999988
Q ss_pred hCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHH
Q 005990 259 RNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARE 338 (666)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~ 338 (666)
.+ .+.. ++.+++.++...|++++|+.
T Consensus 147 ~~-~~~~-----------------------------------------------------~~~~la~~~~~~g~~~~A~~ 172 (217)
T 2pl2_A 147 LE-DTPE-----------------------------------------------------IRSALAELYLSMGRLDEALA 172 (217)
T ss_dssp HC-CCHH-----------------------------------------------------HHHHHHHHHHHHTCHHHHHH
T ss_pred cc-cchH-----------------------------------------------------HHHHHHHHHHHcCCHHHHHH
Confidence 77 4431 12344777777788888888
Q ss_pred HHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHH
Q 005990 339 LVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFA 378 (666)
Q Consensus 339 ~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~ 378 (666)
.+++++..+|++..+++.++.++...|++++|+..|+++.
T Consensus 173 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 173 QYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8887777777777777777777777777777777776653
No 38
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.88 E-value=5.1e-21 Score=187.15 Aligned_cols=263 Identities=11% Similarity=0.083 Sum_probs=198.4
Q ss_pred HHHHcCChhHHHHHHHHhhhcCCCh-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHH
Q 005990 156 GLISAGRASEVQKTLDSLRVKATSS-FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAV 234 (666)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (666)
-.+..|++..|+..++++...+|++ .+..+.++.+|+..|+++.|+..++.. + +.. ..++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~----------~~~-----~~a~~ 69 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---S----------APE-----LQAVR 69 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---S----------CHH-----HHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---C----------Chh-----HHHHH
Confidence 3456788888888888777777766 467778888888888888888766441 1 111 25777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh--CCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCC
Q 005990 235 QLAYVQQLLGNTQEAFGAYTDIIKR--NLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLS 312 (666)
Q Consensus 235 ~la~~~~~~g~~~eA~~~~~~~l~~--~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~ 312 (666)
.++..+...|++++|++.|++++.. +|++..
T Consensus 70 ~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~----------------------------------------------- 102 (291)
T 3mkr_A 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTT----------------------------------------------- 102 (291)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHH-----------------------------------------------
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHH-----------------------------------------------
Confidence 7888888888888888888888765 465531
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHH
Q 005990 313 PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLAR 392 (666)
Q Consensus 313 ~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~l 392 (666)
+.+.++.++...|++++|+..+++ |++..++..++.++...|++++|+..|++++..+|++.. ..+..
T Consensus 103 ------~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~l~~ 170 (291)
T 3mkr_A 103 ------FLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL-TQLAT 170 (291)
T ss_dssp ------HHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHH
T ss_pred ------HHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHH-HHHHH
Confidence 113337788888899999888887 777888888888888999999999999998888887542 23222
Q ss_pred --HHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 005990 393 --AQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASF 469 (666)
Q Consensus 393 --a~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~ 469 (666)
..++...|++++|+.+|+++++..| ++.++..+|.++...|++++|...|++++...|++. .++..+|.+
T Consensus 171 a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~-------~~l~~l~~~ 243 (291)
T 3mkr_A 171 AWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP-------ETLINLVVL 243 (291)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHH
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHH
Confidence 2444456889999999999888888 788888889999999999999999999888764433 377788888
Q ss_pred HHhCCChhh-HHHHHHHHHHhcCChHHHHHHHHh
Q 005990 470 KLRHGREED-ASHLFEELVKTHGSIEALVGLVTT 502 (666)
Q Consensus 470 ~~~~g~~~~-A~~~~~~~l~~~p~~~~l~~l~~~ 502 (666)
+...|+..+ +..+++++++.+|++..+..+...
T Consensus 244 ~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~ 277 (291)
T 3mkr_A 244 SQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAK 277 (291)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 888888876 567888999999886655554433
No 39
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.88 E-value=3.1e-21 Score=200.03 Aligned_cols=279 Identities=11% Similarity=-0.002 Sum_probs=227.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH------HHHHHHHHHcCChhHHHHHHHHhhhc------CCChHH
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE------INFVAGLISAGRASEVQKTLDSLRVK------ATSSFE 182 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~ 182 (666)
...++.+|..++..|++++|+.+|++++...|++.. ..++.++...|++++|+..|++++.. .+....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 456678899999999999999999999998888653 78888999999999999999988876 566788
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCC-----------------
Q 005990 183 LAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGN----------------- 245 (666)
Q Consensus 183 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------- 245 (666)
+++++|.+|...|++++|+.+|++++.+.+... + .+....++..+|.+|...|+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--------D-RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------C-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--------c-hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 999999999999999999999999999975421 1 13455799999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHH
Q 005990 246 TQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVL 325 (666)
Q Consensus 246 ~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~ 325 (666)
+++|+.+|++++...+.. ........++.+++.
T Consensus 199 ~~~A~~~~~~al~~~~~~-----------------------------------------------~~~~~~~~~~~~la~ 231 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDL-----------------------------------------------GDRGAQGRACGNLGN 231 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------------------------------------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-----------------------------------------------CCHHHHHHHHHHHHH
Confidence 777777777665432100 011122334567799
Q ss_pred HHHHcCChHHHHHHHHhccccCCCCc------hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCCh-----hHHHHHHHHH
Q 005990 326 LLLHANKMDQARELVAALPDMFPDSV------MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-----SKIILLARAQ 394 (666)
Q Consensus 326 ~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~-----~~~~~~~la~ 394 (666)
++...|++++|+.++++++...+... .++..+|.++...|++++|+.+|++++...+.. ...++..++.
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN 311 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999988765433 377889999999999999999999998876532 2347888999
Q ss_pred HHHHcCChhHHHHHHhcCcCCCC-------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 005990 395 VAAAANHPFIAAESLAKIPDIQH-------MPATVATLVALKERAGDIDGAAAVLDSAIKWW 449 (666)
Q Consensus 395 ~~~~~g~~~~A~~~l~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~ 449 (666)
++...|++++|+.+|++++...+ ...++..++.+|...|++++|..+|++++...
T Consensus 312 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99999999999999999987654 23467889999999999999999999998875
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.7e-21 Score=184.54 Aligned_cols=231 Identities=13% Similarity=0.058 Sum_probs=197.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELA 230 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 230 (666)
..+|.++...|++++|+..|++++..+ .+..+++.+|.++...|++++|+.+|++++.+.+.... + .+...
T Consensus 9 ~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------~-~~~~~ 79 (258)
T 3uq3_A 9 KAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA-------D-YKVIS 79 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------C-HHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc-------c-hHHHH
Confidence 455666666677777777777776666 67789999999999999999999999999999865310 1 12235
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcC
Q 005990 231 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 310 (666)
Q Consensus 231 ~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~ 310 (666)
.+++.+|.++...|++++|+..|++++...|.
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------------------------------------------ 111 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT------------------------------------------------ 111 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------------------------------------------------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch------------------------------------------------
Confidence 79999999999999999999999999987763
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHH
Q 005990 311 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL 390 (666)
Q Consensus 311 ~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 390 (666)
+.++...|++++|+..++.+...+|++..++..+|.++...|++++|+..|++++...|.+.. ++.
T Consensus 112 -------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~ 177 (258)
T 3uq3_A 112 -------------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR-GYS 177 (258)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHH
T ss_pred -------------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH-HHH
Confidence 123445577889999999999999999999999999999999999999999999999999765 899
Q ss_pred HHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 005990 391 ARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNA 452 (666)
Q Consensus 391 ~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~ 452 (666)
.++.++...|++++|+..|+++++..| ++..+..++.+|...|++++|...|+++++..+..
T Consensus 178 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 240 (258)
T 3uq3_A 178 NRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV 240 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhh
Confidence 999999999999999999999999988 78889999999999999999999999999988543
No 41
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.88 E-value=1.4e-20 Score=195.10 Aligned_cols=290 Identities=9% Similarity=-0.022 Sum_probs=192.0
Q ss_pred CCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHH
Q 005990 17 PPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDE----DAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKA 92 (666)
Q Consensus 17 p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a 92 (666)
+.....++..+..++..|+|++|+.+++++++..|++. .+++.+|.++...|++++|+..|+++.....
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------- 117 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK------- 117 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------
Confidence 45567788999999999999999999999999999986 5889999999999999999999998833210
Q ss_pred HHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------ChhH--HHHHHHHHHcCC--
Q 005990 93 YCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKI------DSLE--INFVAGLISAGR-- 162 (666)
Q Consensus 93 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~--~~l~~~~~~~g~-- 162 (666)
..++ .+....++..+|.++...|++++|+.+|++++...+ .... .+++.++...|+
T Consensus 118 ----~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 183 (411)
T 4a1s_A 118 ----SMND----------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHL 183 (411)
T ss_dssp ----HTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HccC----------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccc
Confidence 0000 112346777888888888888888888888776421 1111 566666666666
Q ss_pred ---------------hhHHHHHHHHhhhcC------CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCC
Q 005990 163 ---------------ASEVQKTLDSLRVKA------TSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFA 221 (666)
Q Consensus 163 ---------------~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 221 (666)
+++|+..|++++... +....+++++|.++...|++++|+.+|++++.+.+...
T Consensus 184 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------ 257 (411)
T 4a1s_A 184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG------ 257 (411)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT------
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC------
Confidence 666666666655432 23445777788888888888888888888887775421
Q ss_pred hhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhh
Q 005990 222 EDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNF 301 (666)
Q Consensus 222 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~ 301 (666)
+ ......++..+|.+|..+|++++|+.+|++++...+...
T Consensus 258 --~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------------- 297 (411)
T 4a1s_A 258 --D-RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG------------------------------------- 297 (411)
T ss_dssp --C-HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT-------------------------------------
T ss_pred --C-cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC-------------------------------------
Confidence 0 022335777788888888888888888877765443110
Q ss_pred hhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCC------chHHHHHHHHHHhhCChhHHHHHHH
Q 005990 302 QLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS------VMPLLLQAAVLVRENKAGKAEELLG 375 (666)
Q Consensus 302 ~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~ 375 (666)
.......++.+++.++...|++++|..++++++...+.. ..++..+|.++...|++++|+.+|+
T Consensus 298 ----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 298 ----------EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 000111223444666677777777777666665543221 2345555666666666666666666
Q ss_pred HHHhhCCC
Q 005990 376 QFAEKLPD 383 (666)
Q Consensus 376 ~~~~~~p~ 383 (666)
+++...+.
T Consensus 368 ~al~~~~~ 375 (411)
T 4a1s_A 368 QHLQLAXX 375 (411)
T ss_dssp HHHHHCCH
T ss_pred HHHHHHhh
Confidence 66665544
No 42
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.87 E-value=3.1e-20 Score=186.26 Aligned_cols=287 Identities=9% Similarity=-0.032 Sum_probs=191.6
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHH
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSD----EDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYC 94 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~ 94 (666)
+...++..+..++..|++++|+.+++++++..|++ ..++..+|.++...|++++|+..++++......
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------- 75 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART-------- 75 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc--------
Confidence 46678999999999999999999999999999998 467889999999999999999999988432110
Q ss_pred HHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---hhH-----HHHHHHHHHcCC----
Q 005990 95 LYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKID---SLE-----INFVAGLISAGR---- 162 (666)
Q Consensus 95 ~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~-----~~l~~~~~~~g~---- 162 (666)
.++ .+....++..+|.++...|++++|+..|++++...+. ... .+++.++...|+
T Consensus 76 ---~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 142 (338)
T 3ro2_A 76 ---IGD----------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 142 (338)
T ss_dssp ---HTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred ---ccc----------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccccc
Confidence 000 1113456677788888888888888888887664322 111 566666666666
Q ss_pred ----------------hhHHHHHHHHhhhc------CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCC
Q 005990 163 ----------------ASEVQKTLDSLRVK------ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNF 220 (666)
Q Consensus 163 ----------------~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 220 (666)
+++|+..+++++.. .+....+++++|.++...|++++|+.+|++++.+.+...
T Consensus 143 ~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----- 217 (338)
T 3ro2_A 143 PGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG----- 217 (338)
T ss_dssp SSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT-----
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-----
Confidence 66676666665543 233455778888888888888888888888888775421
Q ss_pred ChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhh
Q 005990 221 AEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQN 300 (666)
Q Consensus 221 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~ 300 (666)
+ ......++..+|.++...|++++|+.+|++++...+...
T Consensus 218 ---~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------------ 257 (338)
T 3ro2_A 218 ---D-KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK------------------------------------ 257 (338)
T ss_dssp ---C-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT------------------------------------
T ss_pred ---C-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc------------------------------------
Confidence 0 123345788888888888888888888888775433110
Q ss_pred hhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCC------chHHHHHHHHHHhhCChhHHHHHH
Q 005990 301 FQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS------VMPLLLQAAVLVRENKAGKAEELL 374 (666)
Q Consensus 301 ~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l 374 (666)
.......+..+++.++...|++++|...+++++...+.. ..++..+|.++...|++++|+.++
T Consensus 258 -----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 258 -----------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -----------chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 000111223444666677777777777766665443221 234455555666666666666666
Q ss_pred HHHHhhCC
Q 005990 375 GQFAEKLP 382 (666)
Q Consensus 375 ~~~~~~~p 382 (666)
++++...+
T Consensus 327 ~~a~~~~~ 334 (338)
T 3ro2_A 327 EKHLEISR 334 (338)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 66555443
No 43
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.87 E-value=9.3e-21 Score=190.12 Aligned_cols=279 Identities=12% Similarity=-0.006 Sum_probs=223.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH------HHHHHHHHHcCChhHHHHHHHHhhhc------CCChHHH
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE------INFVAGLISAGRASEVQKTLDSLRVK------ATSSFEL 183 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ 183 (666)
..++..|..++..|++++|+.+|++++...|++.. ..++.++...|++++|+..+++++.. .+....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 45678899999999999999999999998887643 68889999999999999999988765 4456778
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCC------------------
Q 005990 184 AYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGN------------------ 245 (666)
Q Consensus 184 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------ 245 (666)
++.+|.++...|++++|+.+|++++.+.+... + ......++..+|.++...|+
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~ 156 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--------D-KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR 156 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------C-HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--------C-chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHH
Confidence 99999999999999999999999999986521 1 12345689999999999999
Q ss_pred --hHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHH
Q 005990 246 --TQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANR 323 (666)
Q Consensus 246 --~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~ 323 (666)
+++|+..|++++...... ........++.++
T Consensus 157 ~~~~~A~~~~~~a~~~~~~~-----------------------------------------------~~~~~~~~~~~~l 189 (338)
T 3ro2_A 157 NALQAAVDLYEENLSLVTAL-----------------------------------------------GDRAAQGRAFGNL 189 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------------------------------------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc-----------------------------------------------CCHHHHHHHHHHH
Confidence 777777777665432100 0111222345667
Q ss_pred HHHHHHcCChHHHHHHHHhccccCCCCc------hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCCh-----hHHHHHHH
Q 005990 324 VLLLLHANKMDQARELVAALPDMFPDSV------MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-----SKIILLAR 392 (666)
Q Consensus 324 a~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~-----~~~~~~~l 392 (666)
+.++...|++++|+..+++++...+... .++..+|.++...|++++|+.++++++...+.. ...++..+
T Consensus 190 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 269 (338)
T 3ro2_A 190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 269 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 8999999999999999999887654322 377888999999999999999999998765432 13477889
Q ss_pred HHHHHHcCChhHHHHHHhcCcCCCC-------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 005990 393 AQVAAAANHPFIAAESLAKIPDIQH-------MPATVATLVALKERAGDIDGAAAVLDSAIKWWL 450 (666)
Q Consensus 393 a~~~~~~g~~~~A~~~l~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~ 450 (666)
+.++...|++++|+.+++++++..+ ...++..++.+|...|++++|..+|++++...+
T Consensus 270 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 270 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999987654 134678899999999999999999999988753
No 44
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=1.5e-18 Score=191.54 Aligned_cols=382 Identities=10% Similarity=0.037 Sum_probs=266.4
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHH
Q 005990 22 DLFTSLNRHIERSEFEQAVKVADQVLSTNPS----DEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYR 97 (666)
Q Consensus 22 ~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~----~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~ 97 (666)
..=..+..++..|++.+|++++++++ .+|+ +......++.+.++. +..+..+++.+... ...-+.|.++..
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~---~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN---YDAPDIANIAIS 1061 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh---ccHHHHHHHHHh
Confidence 33445666779999999999999999 4444 445555566666666 44555566555532 224468899999
Q ss_pred hCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcC
Q 005990 98 QNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKA 177 (666)
Q Consensus 98 ~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 177 (666)
+|.+++|..+|++......+ +..++...+++++|+++++++ +....-..+|.++...|++++|+..|.++
T Consensus 1062 lglyEEAf~IYkKa~~~~~A---~~VLie~i~nldrAiE~Aerv---n~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDVNTSA---VQVLIEHIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred CCCHHHHHHHHHHcCCHHHH---HHHHHHHHhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence 99999999999886533222 222233788899999988865 22222288899999999999999999775
Q ss_pred CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005990 178 TSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDII 257 (666)
Q Consensus 178 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l 257 (666)
++++.++.+|.++...|+|++|+++|..+.+..+.+ .+...+|.+|.+++++++ ++.|-
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~----------------~Idt~LafaYAKl~rlee-le~fI--- 1190 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES----------------YVETELIFALAKTNRLAE-LEEFI--- 1190 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc----------------cccHHHHHHHHhhcCHHH-HHHHH---
Confidence 678888999999999999999999999988877432 133358888888888774 44332
Q ss_pred hhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHH
Q 005990 258 KRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQAR 337 (666)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~ 337 (666)
..++..... .... .+....++..+...+..+ ..+..++.++...|++++|+
T Consensus 1191 -~~~n~ad~~-~iGd---~le~eg~YeeA~~~Y~kA------------------------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1191 -NGPNNAHIQ-QVGD---RCYDEKMYDAAKLLYNNV------------------------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred -hCCCHHHHH-HHHH---HHHhcCCHHHHHHHHHhh------------------------hHHHHHHHHHHHhCCHHHHH
Confidence 122221111 1111 112233444444444211 13345588899999999999
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC
Q 005990 338 ELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH 417 (666)
Q Consensus 338 ~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 417 (666)
+.+.++ .+..+|...+.++...|++..|..+... +..+|+ .+..++..|...|.+++|+.+|+.++.+++
T Consensus 1242 EaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~d----eLeeli~yYe~~G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A 1242 DGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD----ELEELINYYQDRGYFEELITMLEAALGLER 1311 (1630)
T ss_pred HHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhccCh
Confidence 999988 4557888888899999999999998775 555555 445788899999999999999999999998
Q ss_pred -ChhHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHH
Q 005990 418 -MPATVATLVALKERA--GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDAS 480 (666)
Q Consensus 418 -~~~~~~~l~~~~~~~--g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 480 (666)
+.+++..|+.+|.+- ++..++.++|...+...+-- ..-+...+|..+..+|.+.|+++.|+
T Consensus 1312 aH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~--r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1312 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL--RAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred hHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh--HHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 778887888887653 45556666666544432100 00123348999999999999999998
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.86 E-value=1.5e-19 Score=175.84 Aligned_cols=228 Identities=12% Similarity=0.031 Sum_probs=204.6
Q ss_pred CCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhhhcc-chhhhHH
Q 005990 16 PPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIK----ADNIDDALSTIQSSQKF-TFDFNYL 90 (666)
Q Consensus 16 ~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~ 90 (666)
+|.++.+++..+..+...|++++|+.+|+++++ |++..+++.+|.++.. .+++++|+..|+++... .+..++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 79 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHL 79 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 467889999999999999999999999999998 7889999999999999 99999999999999665 4678889
Q ss_pred HHHHHHH----hCCHHHHHHHHHhc--CCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCChhHHHHHHHHHH-
Q 005990 91 KAYCLYR----QNRLDEALESLKIQ--ENNPATMLLKSQILYR----SGEMDACVEFYQKLQKSKIDSLEINFVAGLIS- 159 (666)
Q Consensus 91 ~a~~~~~----~g~~~~A~~~l~~~--~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~- 159 (666)
+|.++.. .+++++|+..+++. ..+..+++.+|.+|.. .+++++|+.+|++++..++.....+++.++..
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAG 159 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC
Confidence 9999999 99999999999883 4588999999999999 99999999999999987643333899999998
Q ss_pred ---cCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhH
Q 005990 160 ---AGRASEVQKTLDSLRVKATSSFELAYNTACSLAE----MNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPI 232 (666)
Q Consensus 160 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (666)
.+++++|+..|++++.. .+..+++++|.+|.. .+++++|+.+|+++++..+. .+
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~-----------------~a 220 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENG-----------------GG 220 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCH-----------------HH
T ss_pred CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCH-----------------HH
Confidence 99999999999999876 457899999999999 99999999999999988632 48
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCH
Q 005990 233 AVQLAYVQQL----LGNTQEAFGAYTDIIKRNLADE 264 (666)
Q Consensus 233 ~~~la~~~~~----~g~~~eA~~~~~~~l~~~~~~~ 264 (666)
++.+|.+|.. .+++++|+.+|+++++..|.+.
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 8999999999 9999999999999999988653
No 46
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=1.4e-17 Score=184.02 Aligned_cols=431 Identities=12% Similarity=0.036 Sum_probs=232.9
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch--hhhHHHHHHHHH
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF--DFNYLKAYCLYR 97 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~a~~~~~ 97 (666)
...++..|..+...|++++|+..|.++ +|++.+..++.++.+.|+|++|+++|..+....+ .+...+|++|.+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 1179 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHh
Confidence 334445555555555555555555443 4445555555555555555555555555433221 123345555555
Q ss_pred hCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcC
Q 005990 98 QNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKA 177 (666)
Q Consensus 98 ~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 177 (666)
++++++...++ ..+ +...+..+|..++..|+|++|+.+|..+- .-..++.+|...|++++|++.++++
T Consensus 1180 l~rleele~fI-~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA~------ny~rLA~tLvkLge~q~AIEaarKA---- 1247 (1630)
T 1xi4_A 1180 TNRLAELEEFI-NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKA---- 1247 (1630)
T ss_pred hcCHHHHHHHH-hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhh------HHHHHHHHHHHhCCHHHHHHHHHHh----
Confidence 55555322222 222 22334456666666666666666666541 1145556666666666666666655
Q ss_pred CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005990 178 TSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDII 257 (666)
Q Consensus 178 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l 257 (666)
.+..+|...+.+++..|+|..|..+... +...+ ..+..++..|...|.|++|+.+|+.++
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~------------------deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHA------------------DELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCH------------------HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2345666666666666666666665543 32231 234578888999999999999999999
Q ss_pred hhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHH
Q 005990 258 KRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQAR 337 (666)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~ 337 (666)
.+++.+...+... ..+.+........+.++.+..-+.. ..-+.......++.....+|...|+|+.|.
T Consensus 1308 ~LeraH~gmftEL-aiLyaKy~peklmEhlk~f~~rini-----------~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1308 GLERAHMGMFTEL-AILYSKFKPQKMREHLELFWSRVNI-----------PKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred ccChhHhHHHHHH-HHHHHhCCHHHHHHHHHHHHHhccc-----------chHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 9987765544322 2223333333334444444222111 011112233445667788999999999998
Q ss_pred HHHHhcccc------------CCCCchHHHHHHHHHHhhC---------------ChhHHHHHHHHH---------H-hh
Q 005990 338 ELVAALPDM------------FPDSVMPLLLQAAVLVREN---------------KAGKAEELLGQF---------A-EK 380 (666)
Q Consensus 338 ~~~~~~~~~------------~p~~~~~~~~~a~~~~~~g---------------~~~~A~~~l~~~---------~-~~ 380 (666)
..+-+.... .+.++++++..+..|...+ +++.++.+|.+. + ..
T Consensus 1376 ~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~v 1455 (1630)
T 1xi4_A 1376 ITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSV 1455 (1630)
T ss_pred HHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHH
Confidence 554443222 3455666666666665444 555555544421 0 00
Q ss_pred CCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCC-----------CChhHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 005990 381 LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ-----------HMPATVATLVALKERAGDIDGAAAVLDSAIKWW 449 (666)
Q Consensus 381 ~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~ 449 (666)
...+...+.-.+..++....+++.=....+..-..+ .-.++...-+.+|.+.|+|..|.+.+.+.-
T Consensus 1456 q~~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~--- 1532 (1630)
T 1xi4_A 1456 QNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDS--- 1532 (1630)
T ss_pred HHhcchhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhcc---
Confidence 112223345555666666666542222222211111 111112334455555588887777776531
Q ss_pred HHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCChHHHHHHHHhhccCChhhHHHH
Q 005990 450 LNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDKAESY 514 (666)
Q Consensus 450 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~l~~l~~~~~~~d~~~a~~~ 514 (666)
.+..........|+.+.+.+++.-.+......--.+.|+.||....++-+.++
T Consensus 1533 ------------l~~dAm~~a~~S~d~e~~e~ll~~F~~~~~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1533 ------------LYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred ------------CHHHHHHHHHHcCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCchHHHHH
Confidence 33344566667788888877777776663223445778888888888877764
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.85 E-value=7.1e-20 Score=174.60 Aligned_cols=207 Identities=10% Similarity=0.064 Sum_probs=168.8
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHh
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQ 98 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~ 98 (666)
....++..+..++..|++++|+.++++++..+|.+..++..+|.++...|++++|+..|+++...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------------- 86 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--------------- 86 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------
Confidence 46678999999999999999999999999999999999999999999999999999999988433
Q ss_pred CCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhc
Q 005990 99 NRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVK 176 (666)
Q Consensus 99 g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 176 (666)
.|.+..++..+|.++...|++++|+.+|++++...|.+.. ..++.++...|++++|+..|++++..
T Consensus 87 ------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 154 (243)
T 2q7f_A 87 ------------DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154 (243)
T ss_dssp ------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred ------------CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4456788899999999999999999999999998888776 88899999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 005990 177 ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDI 256 (666)
Q Consensus 177 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~ 256 (666)
.|++..+++.+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|+++
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH---------------ADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999987431 258899999999999999999999999
Q ss_pred HhhCCCCHhHH
Q 005990 257 IKRNLADESSF 267 (666)
Q Consensus 257 l~~~~~~~~~~ 267 (666)
+..+|++....
T Consensus 220 ~~~~p~~~~~~ 230 (243)
T 2q7f_A 220 IDIQPDHMLAL 230 (243)
T ss_dssp HHHCTTCHHHH
T ss_pred HccCcchHHHH
Confidence 99999886443
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.85 E-value=2e-19 Score=172.58 Aligned_cols=211 Identities=11% Similarity=0.017 Sum_probs=185.9
Q ss_pred CCCCc-HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHH
Q 005990 15 QPPPP-IEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAY 93 (666)
Q Consensus 15 ~~p~~-~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~ 93 (666)
.+|.. +..++..+..+...|++++|+.++++++..+|.+..++..+|.++...|++++|+..|+++...
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---------- 100 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS---------- 100 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------
Confidence 45555 7788999999999999999999999999999999999999999999999999999999987432
Q ss_pred HHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCChhH--HHHHHHHHHcCChhHHHHH
Q 005990 94 CLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQK--SKIDSLE--INFVAGLISAGRASEVQKT 169 (666)
Q Consensus 94 ~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~--~~l~~~~~~~g~~~~A~~~ 169 (666)
.|.+..++..+|.++...|++++|+.+|++++. ..|.+.. .+++.++...|++++|+..
T Consensus 101 -----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 101 -----------------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------------CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455677888999999999999999999999988 6666655 8888999999999999999
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHH
Q 005990 170 LDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEA 249 (666)
Q Consensus 170 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA 249 (666)
|++++...|.+..+++.+|.++...|++++|+.+|++++...+.. ..++..++.++...|++++|
T Consensus 164 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 164 FEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN---------------ARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC---------------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---------------HHHHHHHHHHHHHccCHHHH
Confidence 999999999999999999999999999999999999998877431 24788999999999999999
Q ss_pred HHHHHHHHhhCCCCHhHH
Q 005990 250 FGAYTDIIKRNLADESSF 267 (666)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~ 267 (666)
..++++++...|.+....
T Consensus 229 ~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 229 ASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHHCCCCHHHH
Confidence 999999999999886443
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.84 E-value=2.1e-19 Score=163.28 Aligned_cols=169 Identities=9% Similarity=0.082 Sum_probs=156.8
Q ss_pred CcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHH
Q 005990 18 PPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYR 97 (666)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~ 97 (666)
.++..++..+..+...|+|++|+..|+++++.+|+++.++..+|.+|..+|++++|+..+.++..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--------------- 67 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--------------- 67 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------------
Confidence 45778899999999999999999999999999999999999999999999999999999988732
Q ss_pred hCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhh
Q 005990 98 QNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRV 175 (666)
Q Consensus 98 ~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 175 (666)
..+.+..++..+|.++...++++.|+..+.+++...|++.. ..+|.++...|++++|+..|++++.
T Consensus 68 ------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 68 ------------LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS 135 (184)
T ss_dssp ------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------cCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 25667888999999999999999999999999999999887 8899999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 176 KATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 176 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
.+|++..+++++|.+|...|++++|+.+|+++++++|.
T Consensus 136 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 136 IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999854
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.84 E-value=1.1e-18 Score=163.88 Aligned_cols=210 Identities=10% Similarity=-0.001 Sum_probs=187.4
Q ss_pred CCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHH
Q 005990 16 PPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCL 95 (666)
Q Consensus 16 ~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~ 95 (666)
.|.++..++..+..+...|++++|+.++++++..+|++..++..+|.++...|++++|+..|+++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------ 71 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI------------ 71 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------
Confidence 46778899999999999999999999999999999999999999999999999999999999987332
Q ss_pred HHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHc-CCHHHHHHHHHHHHh--hCCChhH--HHHHHHHHHcCChhHHHHHH
Q 005990 96 YRQNRLDEALESLKIQENNPATMLLKSQILYRS-GEMDACVEFYQKLQK--SKIDSLE--INFVAGLISAGRASEVQKTL 170 (666)
Q Consensus 96 ~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~--~~p~~~~--~~l~~~~~~~g~~~~A~~~~ 170 (666)
.|.+..++..+|.++... |++++|+.+|++++. ..|.... .+++.++...|++++|+..|
T Consensus 72 ---------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 136 (225)
T 2vq2_A 72 ---------------KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYL 136 (225)
T ss_dssp ---------------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455677889999999999 999999999999998 5555555 88999999999999999999
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhh-hhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHH
Q 005990 171 DSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQ-ETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEA 249 (666)
Q Consensus 171 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA 249 (666)
++++...|.+..+++.+|.++...|++++|+.+|++++...+ .. ..++..++.++...|++++|
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a 201 (225)
T 2vq2_A 137 KRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ---------------ADDLLLGWKIAKALGNAQAA 201 (225)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC---------------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC---------------HHHHHHHHHHHHhcCcHHHH
Confidence 999999999999999999999999999999999999999885 31 24677888999999999999
Q ss_pred HHHHHHHHhhCCCCHhHH
Q 005990 250 FGAYTDIIKRNLADESSF 267 (666)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~ 267 (666)
..+++.+....|++....
T Consensus 202 ~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 202 YEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCCHHHH
Confidence 999999999999887544
No 51
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.84 E-value=1.1e-18 Score=178.71 Aligned_cols=242 Identities=11% Similarity=-0.043 Sum_probs=190.1
Q ss_pred HHHHHHHcCChhHHHHHHHHhhhc------CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHh
Q 005990 153 FVAGLISAGRASEVQKTLDSLRVK------ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIE 226 (666)
Q Consensus 153 l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 226 (666)
.|..+...|++++|+..|++++.. .+....+++++|.+|...|++++|+.+|++++.+.+.. .+..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--------~~~~ 180 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH--------EAYN 180 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC--------STTH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--------ccch
Confidence 555556666666666666666553 22356789999999999999999999999999998652 1112
Q ss_pred hhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHH
Q 005990 227 IELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARV 306 (666)
Q Consensus 227 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 306 (666)
+..+.++..+|.+|..+|++++|+..|++++...+...
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------------------ 218 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK------------------------------------------ 218 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC------------------------------------------
Confidence 44567999999999999999999999999986643211
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccc-----cC-CCCchHHHHHHHHHHhhCChhHHHHHHHHHHhh
Q 005990 307 LDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPD-----MF-PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK 380 (666)
Q Consensus 307 l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-----~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~ 380 (666)
.......++.+++.++...|++++|+..+++++. .. |....++..+|.++...|++++|+.++++++..
T Consensus 219 -----~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 219 -----QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 0111223457779999999999999999999988 45 666788899999999999999999999999886
Q ss_pred C-----CChhHHHHHHHHHHHHHcCC---hhHHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 005990 381 L-----PDKSKIILLARAQVAAAANH---PFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWL 450 (666)
Q Consensus 381 ~-----p~~~~~~~~~la~~~~~~g~---~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~ 450 (666)
. |.... .+..++.++...|+ +.+|+.++++.........++..+|.+|...|++++|..+|++++....
T Consensus 294 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 294 SQKAGDVIYLS-EFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHTCHHHHH-HHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHH-HHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4 32222 35668999999999 9999999999833222556778999999999999999999999998764
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.83 E-value=5.4e-20 Score=179.08 Aligned_cols=251 Identities=8% Similarity=-0.099 Sum_probs=198.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC----hhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 005990 120 LKSQILYRSGEMDACVEFYQKLQKSKID----SLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAE 193 (666)
Q Consensus 120 ~la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 193 (666)
.++.++...|++++|+..|++++...+. +.. ..+|.++...|++++|+..|++++..+|++..+++.+|.++..
T Consensus 10 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 10 VLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp GSCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred ceeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 3444555678899999999999986432 222 8889999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhh
Q 005990 194 MNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNN 273 (666)
Q Consensus 194 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~ 273 (666)
.|++++|+.+|++++.+.+.. ..+++.+|.++...|++++|+.+|++++...|.+.....
T Consensus 90 ~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~----- 149 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDPTY---------------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL----- 149 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC---------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-----
T ss_pred ccCHHHHHHHHHHHHhcCccc---------------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH-----
Confidence 999999999999999988542 258999999999999999999999999998887641100
Q ss_pred hhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchH
Q 005990 274 LVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMP 353 (666)
Q Consensus 274 l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 353 (666)
...+....|++++|...+..++...|.+...
T Consensus 150 -------------------------------------------------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (275)
T 1xnf_A 150 -------------------------------------------------WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG 180 (275)
T ss_dssp -------------------------------------------------HHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH
T ss_pred -------------------------------------------------HHHHHHHhcCHHHHHHHHHHHHhcCCcchHH
Confidence 0122355688999999998888888877655
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHhhCCCh---hHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCCChhHHHHHHHHHH
Q 005990 354 LLLQAAVLVRENKAGKAEELLGQFAEKLPDK---SKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKE 430 (666)
Q Consensus 354 ~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~ 430 (666)
+. .+.++...++.++|+..+.+++...|.. ...++..++.++...|++++|+..|+++++..|.. +...+.++.
T Consensus 181 ~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~ 257 (275)
T 1xnf_A 181 WN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALL 257 (275)
T ss_dssp HH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHH
T ss_pred HH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHH
Confidence 44 6677788888899999999988776642 13478889999999999999999999999888822 223366777
Q ss_pred HcCChhHHHHHH
Q 005990 431 RAGDIDGAAAVL 442 (666)
Q Consensus 431 ~~g~~~~A~~~l 442 (666)
..|++++|+..|
T Consensus 258 ~l~~~~~a~~~~ 269 (275)
T 1xnf_A 258 ELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHhhHHHH
Confidence 888888888776
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.82 E-value=3.3e-19 Score=169.95 Aligned_cols=215 Identities=18% Similarity=0.133 Sum_probs=150.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSL 191 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 191 (666)
....++.+|.+++..|++++|+.+|++++...|++.. ..++.++...|++++|+..|++++...|.+..+++.+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4567778888888888888888888888888877766 77788888888888888888888888888888888888888
Q ss_pred HHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHH
Q 005990 192 AEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAV 271 (666)
Q Consensus 192 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~ 271 (666)
...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++...|.+..
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------ 160 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMEN---------------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE------ 160 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCS---------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH------
T ss_pred HHhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH------
Confidence 88888888888888888877431 247788888888888888888888888877775431
Q ss_pred hhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCc
Q 005990 272 NNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV 351 (666)
Q Consensus 272 ~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 351 (666)
++.+++.++...|++++|+..+++++...|++.
T Consensus 161 -----------------------------------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 193 (243)
T 2q7f_A 161 -----------------------------------------------ARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA 193 (243)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCH
T ss_pred -----------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 113336777778888888888888888888877
Q ss_pred hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHH
Q 005990 352 MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 397 (666)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~ 397 (666)
.++..++.++...|++++|+..|++++...|++.. ++..++.+..
T Consensus 194 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~~~l~~ 238 (243)
T 2q7f_A 194 DAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML-ALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH-HHHHHTC---
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH-HHHHHHHHHh
Confidence 78888888888888888888888888888887654 5555554443
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.82 E-value=2e-19 Score=174.96 Aligned_cols=225 Identities=10% Similarity=-0.019 Sum_probs=193.8
Q ss_pred HHhhhccHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccc---hhhhHHHHHHHHHhCCH
Q 005990 29 RHIERSEFEQAVKVADQVLSTN----PSDEDAMRCKVVALIKADNIDDALSTIQSSQKFT---FDFNYLKAYCLYRQNRL 101 (666)
Q Consensus 29 ~~~~~~~~~~A~~~~~~~l~~~----p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~a~~~~~~g~~ 101 (666)
.+...|++++|+..++++++.. |.+..+++.+|.++...|++++|+..|+++.... +..++.+|.++...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 3456789999999999999984 4568899999999999999999999999996554 46788999999999999
Q ss_pred HHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-HHHHHHHHHcCChhHHHHHHHHhhhc
Q 005990 102 DEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-INFVAGLISAGRASEVQKTLDSLRVK 176 (666)
Q Consensus 102 ~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 176 (666)
++|+..+++ .|.+..++..+|.++...|++++|+.+|++++...|++.. ..+..++...|++++|+..|++++..
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999987 5778999999999999999999999999999999998876 33444556679999999999999988
Q ss_pred CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 005990 177 ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDI 256 (666)
Q Consensus 177 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~ 256 (666)
.|.+... +.++.++...+++++|+..+.+++...+.. .+....+++.+|.++...|++++|+..|+++
T Consensus 174 ~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 174 SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSL-----------AEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHH-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccc-----------cccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8877644 458888899999999999999998877431 1233478999999999999999999999999
Q ss_pred HhhCCCCHh
Q 005990 257 IKRNLADES 265 (666)
Q Consensus 257 l~~~~~~~~ 265 (666)
+..+|.+..
T Consensus 242 l~~~p~~~~ 250 (275)
T 1xnf_A 242 VANNVHNFV 250 (275)
T ss_dssp HTTCCTTCH
T ss_pred HhCCchhHH
Confidence 999997643
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.82 E-value=1.7e-18 Score=157.27 Aligned_cols=171 Identities=12% Similarity=0.041 Sum_probs=152.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCH
Q 005990 52 SDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEM 131 (666)
Q Consensus 52 ~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~ 131 (666)
+++.+|+.+|.++...|+|++|+..|+++.. ..|++..++..+|.++...|++
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~---------------------------~~p~~~~~~~~la~~~~~~~~~ 55 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLK---------------------------ADPNNVETLLKLGKTYMDIGLP 55 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------------------HCTTCHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------------hCCCCHHHHHHHHHHHHHCCCH
Confidence 3566777777777777777777777777632 2678899999999999999999
Q ss_pred HHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 005990 132 DACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARR 209 (666)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 209 (666)
++|+..+.+++...|++.. ..++.++...++++.|...+.+++..+|++..+++.+|.++...|++++|+..|+++++
T Consensus 56 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 56 NDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS 135 (184)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 9999999999999998877 88899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 005990 210 IGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADE 264 (666)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~ 264 (666)
++|.. ..+++.+|.+|..+|++++|+..|+++++.+|.+.
T Consensus 136 ~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 136 IKPGF---------------IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred hcchh---------------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 98542 36899999999999999999999999999998653
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=7e-18 Score=161.76 Aligned_cols=204 Identities=14% Similarity=0.073 Sum_probs=170.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLA 192 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 192 (666)
..+++.+|.++...|++++|+.+|++++...|++.. ..++.++...|++++|+..|++++...|.+..+++.+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 677888999999999999999999999888887766 788888888999999999999998888888889999999999
Q ss_pred HhcCHHHHHHHHHHHHH--hhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHH
Q 005990 193 EMNKYTEAEQLLLTARR--IGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVA 270 (666)
Q Consensus 193 ~~g~~~~A~~~l~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~ 270 (666)
..|++++|+.+|++++. .. +. ...++..+|.++...|++++|+.+|++++...|.+..
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~----------~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----- 176 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLY----------PE-----RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS----- 176 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTC----------TT-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-----
T ss_pred HHhHHHHHHHHHHHHHhCccC----------cc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH-----
Confidence 99999999999999887 33 21 2358888899999999999999999999888775531
Q ss_pred HhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCC
Q 005990 271 VNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS 350 (666)
Q Consensus 271 ~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 350 (666)
++..++.++...|++++|...++.++...|++
T Consensus 177 ------------------------------------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (252)
T 2ho1_A 177 ------------------------------------------------VALEMADLLYKEREYVPARQYYDLFAQGGGQN 208 (252)
T ss_dssp ------------------------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC
T ss_pred ------------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 11333777888899999999999888888888
Q ss_pred chHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhH
Q 005990 351 VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK 386 (666)
Q Consensus 351 ~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 386 (666)
...+..++.++...|++++|+.++++++...|++..
T Consensus 209 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 209 ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 888888888888899999999999999888888654
No 57
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.81 E-value=1.1e-17 Score=171.50 Aligned_cols=246 Identities=13% Similarity=0.005 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005990 183 LAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA 262 (666)
Q Consensus 183 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~ 262 (666)
.++.+|.++...|++++|+.+|++++.+.... ++. ...+.+++.+|.+|..+|++++|+..|.+++...+.
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~--~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 175 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFV-------KDR--IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE 175 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-------CCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC-------CCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 45669999999999999999999999986432 111 335579999999999999999999999999876542
Q ss_pred CHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHh
Q 005990 263 DESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAA 342 (666)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~ 342 (666)
.. + .......++.+++.++...|++++|+..+.+
T Consensus 176 ~~-----------------~-----------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 209 (383)
T 3ulq_A 176 HE-----------------A-----------------------------YNIRLLQCHSLFATNFLDLKQYEDAISHFQK 209 (383)
T ss_dssp CS-----------------T-----------------------------THHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred Cc-----------------c-----------------------------chHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 21 0 0111123456779999999999999999999
Q ss_pred ccccCCCCc------hHHHHHHHHHHhhCChhHHHHHHHHHHh-----hC-CChhHHHHHHHHHHHHHcCChhHHHHHHh
Q 005990 343 LPDMFPDSV------MPLLLQAAVLVRENKAGKAEELLGQFAE-----KL-PDKSKIILLARAQVAAAANHPFIAAESLA 410 (666)
Q Consensus 343 ~~~~~p~~~------~~~~~~a~~~~~~g~~~~A~~~l~~~~~-----~~-p~~~~~~~~~la~~~~~~g~~~~A~~~l~ 410 (666)
++...+... .++..+|.++...|++++|+.+|++++. .+ |.. ..++..+|.++...|++++|+.+++
T Consensus 210 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 288 (383)
T 3ulq_A 210 AYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL-PQAYFLITQIHYKLGKIDKAHEYHS 288 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 987654322 4778899999999999999999999998 45 554 4589999999999999999999999
Q ss_pred cCcCCCC---Ch---hHHHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHH
Q 005990 411 KIPDIQH---MP---ATVATLVALKERAGD---IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASH 481 (666)
Q Consensus 411 ~~~~~~~---~~---~~~~~l~~~~~~~g~---~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 481 (666)
+++++.+ ++ ..+..++.+|...|+ +.+|+.++++. ...+....++..+|.++...|++++|..
T Consensus 289 ~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~--------~~~~~~~~~~~~la~~y~~~g~~~~A~~ 360 (383)
T 3ulq_A 289 KGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK--------MLYADLEDFAIDVAKYYHERKNFQKASA 360 (383)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--------cCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9987643 22 225678999999999 55555555543 1223444577789999999999999999
Q ss_pred HHHHHHHhcCC
Q 005990 482 LFEELVKTHGS 492 (666)
Q Consensus 482 ~~~~~l~~~p~ 492 (666)
+|++++.....
T Consensus 361 ~~~~al~~~~~ 371 (383)
T 3ulq_A 361 YFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHHH
Confidence 99999987643
No 58
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.80 E-value=1.7e-17 Score=169.61 Aligned_cols=242 Identities=12% Similarity=-0.038 Sum_probs=184.0
Q ss_pred HHHHHHcCChhHHHHHHHHhhhc------CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhh
Q 005990 154 VAGLISAGRASEVQKTLDSLRVK------ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEI 227 (666)
Q Consensus 154 ~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 227 (666)
|..+...|++++|+..|++++.. .+....+++++|.+|...|+++.|+.++++++.+.+.. .+...
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--------~~~~~ 179 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH--------PLYSI 179 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--------TTCHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC--------CCchh
Confidence 33334444444444444444332 12346689999999999999999999999999998642 11113
Q ss_pred hhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHh
Q 005990 228 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL 307 (666)
Q Consensus 228 ~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l 307 (666)
..+.++..+|.+|..+|++++|+..|++++...+..
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-------------------------------------------- 215 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI-------------------------------------------- 215 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------------------------------------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--------------------------------------------
Confidence 456799999999999999999999999998643210
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccc-----cCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCC
Q 005990 308 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPD-----MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLP 382 (666)
Q Consensus 308 ~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p 382 (666)
-.......++.+++.++...|++++|+..+++++. .+|....+++.+|.++...|++++|+.++++++...+
T Consensus 216 ---~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 216 ---QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 00111223457779999999999999999999988 6777778889999999999999999999999998753
Q ss_pred C----hhHHHHHHHHHHHHHcCC---hhHHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 005990 383 D----KSKIILLARAQVAAAANH---PFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWL 450 (666)
Q Consensus 383 ~----~~~~~~~~la~~~~~~g~---~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~ 450 (666)
. .....+..++.++...++ +.+|+.++++.........+...+|.+|...|++++|..+|+++++...
T Consensus 293 ~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 293 ARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp TTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 2 112245667788888888 9999999998533222556678999999999999999999999988764
No 59
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.80 E-value=1.3e-17 Score=161.96 Aligned_cols=225 Identities=10% Similarity=-0.034 Sum_probs=150.1
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHH----cCChhHHHHHHHHhhhcCCChHHHHH
Q 005990 112 ENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLIS----AGRASEVQKTLDSLRVKATSSFELAY 185 (666)
Q Consensus 112 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 185 (666)
+.++.+++.+|.+++..|++++|+.+|++++. +++.. .+++.++.. .+++++|+..|++++..+ +..+++
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 34667778888888888888888888888776 33333 777777777 788888888888777664 667788
Q ss_pred HHHHHHHH----hcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 005990 186 NTACSLAE----MNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQL----LGNTQEAFGAYTDII 257 (666)
Q Consensus 186 ~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~~l 257 (666)
++|.+|.. .+++++|+.+|++++.... ..+++.+|.+|.. .|++++|+.+|++++
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-----------------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY-----------------AEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCC-----------------ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 88888887 8888888888888777641 1477778888887 788888888888777
Q ss_pred hhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHH----cCCh
Q 005990 258 KRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLH----ANKM 333 (666)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~----~~~~ 333 (666)
..++.. ...+++.++.. .+++
T Consensus 142 ~~~~~~-------------------------------------------------------a~~~lg~~~~~~~~~~~~~ 166 (273)
T 1ouv_A 142 DLNDGD-------------------------------------------------------GCTILGSLYDAGRGTPKDL 166 (273)
T ss_dssp HTTCHH-------------------------------------------------------HHHHHHHHHHHTSSSCCCH
T ss_pred hcCcHH-------------------------------------------------------HHHHHHHHHHcCCCCCCCH
Confidence 543210 11223555555 6666
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHh----hCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHH----cCChhHH
Q 005990 334 DQARELVAALPDMFPDSVMPLLLQAAVLVR----ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA----ANHPFIA 405 (666)
Q Consensus 334 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~----~g~~~~A 405 (666)
++|+.+++++... ++..+++.+|.++.. .+++++|+.+|+++++..+ ..+++.++.+|.. .+++++|
T Consensus 167 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 167 KKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQA 241 (273)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHH
Confidence 6666666666554 334556666666666 6666666666666666544 2255566666666 6666666
Q ss_pred HHHHhcCcCCCC
Q 005990 406 AESLAKIPDIQH 417 (666)
Q Consensus 406 ~~~l~~~~~~~~ 417 (666)
+.+|+++++..|
T Consensus 242 ~~~~~~a~~~~~ 253 (273)
T 1ouv_A 242 IENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC
Confidence 666666655554
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.80 E-value=5.9e-19 Score=185.39 Aligned_cols=206 Identities=12% Similarity=0.049 Sum_probs=188.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHhhhccch---hhhHHHHHHHHHhCCHHHHHHHHHh
Q 005990 35 EFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNI-DDALSTIQSSQKFTF---DFNYLKAYCLYRQNRLDEALESLKI 110 (666)
Q Consensus 35 ~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~-~~A~~~~~~~~~~~~---~~~~~~a~~~~~~g~~~~A~~~l~~ 110 (666)
.+++++..+++++...|.+..+++.+|.++...|+| ++|+..|+++....+ ..++.+|.+|+..|++++|+..+++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 377888889988888999999999999999999999 999999999976654 6888999999999999999999987
Q ss_pred ----cCCChhHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHc--------CChhHHH
Q 005990 111 ----QENNPATMLLKSQILYRS---------GEMDACVEFYQKLQKSKIDSLE--INFVAGLISA--------GRASEVQ 167 (666)
Q Consensus 111 ----~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~--------g~~~~A~ 167 (666)
.|+ ..++..+|.++... |++++|+..|++++..+|++.. .+++.+|... |++++|+
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 454 78999999999999 9999999999999999999887 8999999998 9999999
Q ss_pred HHHHHhhhcCC---ChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcC
Q 005990 168 KTLDSLRVKAT---SSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLG 244 (666)
Q Consensus 168 ~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 244 (666)
..|++++..+| ++..+++++|.+|...|++++|+..|++++.+.|.. ..++..++.++..+|
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW---------------PEPQQREQQLLEFLS 306 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999999999999542 258999999999999
Q ss_pred ChHHHHHHHHHH
Q 005990 245 NTQEAFGAYTDI 256 (666)
Q Consensus 245 ~~~eA~~~~~~~ 256 (666)
++++|+..+.++
T Consensus 307 ~~~eAi~~~~~~ 318 (474)
T 4abn_A 307 RLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHHhccc
Confidence 999999877654
No 61
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.80 E-value=1.7e-17 Score=156.49 Aligned_cols=202 Identities=9% Similarity=-0.009 Sum_probs=170.9
Q ss_pred CCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHH
Q 005990 17 PPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNP-SDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCL 95 (666)
Q Consensus 17 p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~ 95 (666)
+.++..++..+..++..|+|++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++...
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------ 71 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK------------ 71 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------------
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh------------
Confidence 34568999999999999999999999999999998 88999999999999999999999999998433
Q ss_pred HHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChh-------H--HHHHHHHHHcCChhHH
Q 005990 96 YRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSL-------E--INFVAGLISAGRASEV 166 (666)
Q Consensus 96 ~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~--~~l~~~~~~~g~~~~A 166 (666)
.|.+..++..+|.++...|++++|+..|++++...|++. . .++|.++...|++++|
T Consensus 72 ---------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 136 (228)
T 4i17_A 72 ---------------NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKA 136 (228)
T ss_dssp ---------------TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------------CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHH
Confidence 456678899999999999999999999999999999876 2 7889999999999999
Q ss_pred HHHHHHhhhcCCC--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcC
Q 005990 167 QKTLDSLRVKATS--SFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLG 244 (666)
Q Consensus 167 ~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 244 (666)
+..|++++..+|+ +..+++++|.+|+..|+ ..++++..+.... .....+......+
T Consensus 137 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~-----------------~~~~~~~~~~~~~ 194 (228)
T 4i17_A 137 EENYKHATDVTSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLASSN-----------------KEKYASEKAKADA 194 (228)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTTTC-----------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcccCC-----------------HHHHHHHHHHHHH
Confidence 9999999999999 88999999999987654 4455555554221 2223344556678
Q ss_pred ChHHHHHHHHHHHhhCCCCHhHH
Q 005990 245 NTQEAFGAYTDIIKRNLADESSF 267 (666)
Q Consensus 245 ~~~eA~~~~~~~l~~~~~~~~~~ 267 (666)
.+++|+..|+++++.+|++....
T Consensus 195 ~~~~A~~~~~~a~~l~p~~~~~~ 217 (228)
T 4i17_A 195 AFKKAVDYLGEAVTLSPNRTEIK 217 (228)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCHHHH
Confidence 89999999999999999987544
No 62
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.80 E-value=3.2e-18 Score=178.63 Aligned_cols=344 Identities=12% Similarity=0.003 Sum_probs=239.8
Q ss_pred cHHHHHHHHHHHhhhccH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHhhhcc-chhhhH
Q 005990 19 PIEDLFTSLNRHIERSEF---EQAVKVADQVLSTNPSDEDAMRCKVVALIKAD-----NIDDALSTIQSSQKF-TFDFNY 89 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~---~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g-----~~~~A~~~~~~~~~~-~~~~~~ 89 (666)
++.+++..+..+...|++ ++|+..|+++++. ++.+++.+|.++...+ ++++|+.+|+++... .+...+
T Consensus 34 ~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~ 110 (452)
T 3e4b_A 34 YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLI 110 (452)
T ss_dssp CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHH
T ss_pred CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHH
Confidence 344566677777778888 9999999999976 6789999999877776 889999999999654 456888
Q ss_pred HHHHHHHHhCCHHH---HHHHHHh--cCCChhHHHHHHHHHHHcCCHHHHHHH----HHHHHhhCCChhHHHHHHHHHHc
Q 005990 90 LKAYCLYRQNRLDE---ALESLKI--QENNPATMLLKSQILYRSGEMDACVEF----YQKLQKSKIDSLEINFVAGLISA 160 (666)
Q Consensus 90 ~~a~~~~~~g~~~~---A~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~----~~~~l~~~p~~~~~~l~~~~~~~ 160 (666)
.++.+|...+..++ +.+.+.. ...++.+++.+|.+|...+.+++++.. ++.+...+|+ ...+++.+|...
T Consensus 111 ~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~-a~~~Lg~~~~~~ 189 (452)
T 3e4b_A 111 PLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI-CYVELATVYQKK 189 (452)
T ss_dssp HHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT-HHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHc
Confidence 99999988766444 3444443 234788999999999999966655554 4444444444 338999999999
Q ss_pred C---ChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHH
Q 005990 161 G---RASEVQKTLDSLRVKATSSFELAYNTACSLAEM----NKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIA 233 (666)
Q Consensus 161 g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (666)
| ++++|+..|+++....+.....++++|.+|... +++++|+.+|+++. +.. ..++
T Consensus 190 g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~---------------~~a~ 251 (452)
T 3e4b_A 190 QQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY---------------PASW 251 (452)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS---------------THHH
T ss_pred CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC---------------HHHH
Confidence 9 999999999999999999988889999999766 79999999999997 221 2588
Q ss_pred HHHHHH-H--HHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcC
Q 005990 234 VQLAYV-Q--QLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 310 (666)
Q Consensus 234 ~~la~~-~--~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~ 310 (666)
+.+|.+ + ...|++++|+.+|+++.... +. .
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~--------------------~------------------------- 284 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QP--------------------R------------------------- 284 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CH--------------------H-------------------------
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CH--------------------H-------------------------
Confidence 999998 4 46899999999999988543 21 1
Q ss_pred CCHHHHHHHHHHHHHHHHHcC-----ChHHHHHHHHhccccCCCCchHHHHHHHHHHh----hCChhHHHHHHHHHHhhC
Q 005990 311 LSPKQREAIYANRVLLLLHAN-----KMDQARELVAALPDMFPDSVMPLLLQAAVLVR----ENKAGKAEELLGQFAEKL 381 (666)
Q Consensus 311 ~~~~q~~~~~~~~a~~~~~~~-----~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~l~~~~~~~ 381 (666)
..++++.+|. .| ++++|+.+|+++. ++++.+.+.+|.+|.. ..++++|+.+|+++.+..
T Consensus 285 --------A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 285 --------AELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp --------HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred --------HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 1234466665 55 9999999999998 8899999999988877 449999999999998754
Q ss_pred CChhHHHHHHHHHHHHH----cCChhHHHHHHhcCcCCCCChhHHHHHHHHHHHc--CChhHHHHHHHHHHH
Q 005990 382 PDKSKIILLARAQVAAA----ANHPFIAAESLAKIPDIQHMPATVATLVALKERA--GDIDGAAAVLDSAIK 447 (666)
Q Consensus 382 p~~~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~l~~a~~ 447 (666)
. .. +.+.++.+|.. ..++.+|..+|+++.+..+ +.....+..+.... ++..+|..++++...
T Consensus 353 ~--~~-A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 353 Q--NS-ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp C--TT-HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred h--HH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3 23 78889999875 4689999999999988665 33344445443322 234455555554443
No 63
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.80 E-value=1.3e-17 Score=156.64 Aligned_cols=209 Identities=11% Similarity=-0.027 Sum_probs=167.8
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHH
Q 005990 112 ENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTAC 189 (666)
Q Consensus 112 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 189 (666)
|.+..++..+|.+++..|++++|+.+|++++...|++.. ..++.++...|++++|+..|++++...|.+..+++.+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 446678888899999999999999999999888887766 778888888899999999999888888888888899999
Q ss_pred HHHHh-cCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHH
Q 005990 190 SLAEM-NKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA 268 (666)
Q Consensus 190 ~~~~~-g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~ 268 (666)
++... |++++|+.+|++++. .+.. +. ...+++.+|.++...|++++|+..|++++...|.+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~-------~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--- 148 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTY-------PT-----PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP--- 148 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTC-------SC-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCC-------cc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch---
Confidence 99999 999999999988887 2111 11 2257888889999999999999999888887775531
Q ss_pred HHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCC
Q 005990 269 VAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFP 348 (666)
Q Consensus 269 ~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p 348 (666)
.+.+++.++...|++++|...+++++...|
T Consensus 149 --------------------------------------------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 149 --------------------------------------------------AFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred --------------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 113337777888888888888888888888
Q ss_pred -CCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhH
Q 005990 349 -DSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK 386 (666)
Q Consensus 349 -~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 386 (666)
++...+...+.++...|++++|..+++.+....|++..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 179 VLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 77777777777888888888888888888888887654
No 64
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.7e-18 Score=172.52 Aligned_cols=366 Identities=8% Similarity=-0.023 Sum_probs=172.2
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhc
Q 005990 32 ERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQ 111 (666)
Q Consensus 32 ~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 111 (666)
..|++++|..+++++ +++++|..+|.++...|++++|++.|.++ .++..+...+.++...|++++|+.+++..
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 557789999999888 34569999999999999999999999886 34456677778888888888888877764
Q ss_pred CC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHH
Q 005990 112 EN---NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNT 187 (666)
Q Consensus 112 ~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 187 (666)
.. ++.+...++.+|.+.|++.++.++|+ .|+... .++|..+...|.+++|...|.++ ..|..+
T Consensus 88 rk~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~L 154 (449)
T 1b89_A 88 RKKARESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRL 154 (449)
T ss_dssp ---------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHT--------TCHHHH
T ss_pred HHhCccchhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHH
Confidence 32 34667778888888888888877774 243333 78888888888888888888876 367778
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHH
Q 005990 188 ACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSF 267 (666)
Q Consensus 188 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~ 267 (666)
|.++..+|+|++|++.++++. ++ .+|.....++...|+++.|..+...+. ..|++
T Consensus 155 A~~L~~Lg~yq~AVea~~KA~--~~------------------~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~---- 209 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKAN--ST------------------RTWKEVCFACVDGKEFRLAQMCGLHIV-VHADE---- 209 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHHT--CH------------------HHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHH----
T ss_pred HHHHHHhccHHHHHHHHHHcC--Cc------------------hhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhh----
Confidence 888888888888888888882 21 377888888888888888855443311 11100
Q ss_pred HHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccC
Q 005990 268 AVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF 347 (666)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 347 (666)
+ ...+.+|...|++++|+.+++.++...
T Consensus 210 ----------------------l------------------------------~~lv~~Yek~G~~eEai~lLe~aL~le 237 (449)
T 1b89_A 210 ----------------------L------------------------------EELINYYQDRGYFEELITMLEAALGLE 237 (449)
T ss_dssp ----------------------H------------------------------HHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred ----------------------H------------------------------HHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence 0 112677889999999999999999999
Q ss_pred CCCchHHHHHHHHHHh--hCChhHHHHHHHHHHhhCC-----ChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCC-----
Q 005990 348 PDSVMPLLLQAAVLVR--ENKAGKAEELLGQFAEKLP-----DKSKIILLARAQVAAAANHPFIAAESLAKIPDI----- 415 (666)
Q Consensus 348 p~~~~~~~~~a~~~~~--~g~~~~A~~~l~~~~~~~p-----~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~----- 415 (666)
+.+...+..++.++.+ -++..+.++.|...+...| ++. .+|..++.+|...++++.|+..+-.....
T Consensus 238 ~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~-~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~ 316 (449)
T 1b89_A 238 RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQA-HLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEG 316 (449)
T ss_dssp TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTT-TCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHH-HHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhH
Confidence 8888888888877765 5677777777765554444 323 37889999999999999999888776544
Q ss_pred -------CC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHH
Q 005990 416 -------QH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELV 487 (666)
Q Consensus 416 -------~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 487 (666)
.+ +.++++..+..|. +....++..|..++.- . .+. .....++.+.|+..-...+++.+.
T Consensus 317 ~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~---~--ld~------~r~v~~~~~~~~l~l~~~yl~~v~ 383 (449)
T 1b89_A 317 QFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSP---R--LDH------TRAVNYFSKVKQLPLVKPYLRSVQ 383 (449)
T ss_dssp HHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGG---G--CCH------HHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred HHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHh---c--cCc------HHHHHHHHHcCCcHHHHHHHHHHH
Confidence 23 5667777777776 3444555555544421 0 111 122334445555555555554444
Q ss_pred ---------------HhcCChHHHHHHHHhhccCCh
Q 005990 488 ---------------KTHGSIEALVGLVTTSAHVDV 508 (666)
Q Consensus 488 ---------------~~~p~~~~l~~l~~~~~~~d~ 508 (666)
-..-|...|...|.+|..+|.
T Consensus 384 ~~n~~~vnealn~l~ieeed~~~lr~si~~~~nfd~ 419 (449)
T 1b89_A 384 NHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDN 419 (449)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHCCCSCH
T ss_pred HhhHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcCH
Confidence 333344455555666666665
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.79 E-value=3.5e-18 Score=186.21 Aligned_cols=174 Identities=14% Similarity=0.122 Sum_probs=163.7
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYC 94 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~ 94 (666)
..|+++.++...+..+...|++++|+..|+++++++|++..+++.+|.+|.++|++++|+..|+++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----------- 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI----------- 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------
Confidence 357899999999999999999999999999999999999999999999999999999999999998443
Q ss_pred HHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHH
Q 005990 95 LYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDS 172 (666)
Q Consensus 95 ~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~ 172 (666)
.|++..+++.+|.++..+|++++|++.|+++++.+|++.+ .++|.+|...|++++|+..|++
T Consensus 73 ----------------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 136 (723)
T 4gyw_A 73 ----------------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136 (723)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5678899999999999999999999999999999999888 9999999999999999999999
Q ss_pred hhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhc
Q 005990 173 LRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETL 215 (666)
Q Consensus 173 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~ 215 (666)
+++.+|++.++++++|.++...|++++|++.|++++++.++..
T Consensus 137 Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 137 ALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179 (723)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHH
Confidence 9999999999999999999999999999999999999986654
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.79 E-value=3e-18 Score=179.93 Aligned_cols=214 Identities=15% Similarity=-0.016 Sum_probs=170.1
Q ss_pred CCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCCh-hHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Q 005990 129 GEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRA-SEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLL 205 (666)
Q Consensus 129 g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 205 (666)
+.+++++..++.+....|++.. ..+|.++...|++ ++|+..|++++..+|++.++++++|.+|...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3467888888888887887766 8899999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHc---------CChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhh
Q 005990 206 TARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLL---------GNTQEAFGAYTDIIKRNLADESSFAVAVNNLVA 276 (666)
Q Consensus 206 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~ 276 (666)
+++++.+. ..++..+|.++..+ |++++|+..|++++..+|.+...+
T Consensus 162 ~al~~~p~----------------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--------- 216 (474)
T 4abn_A 162 GALTHCKN----------------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSW--------- 216 (474)
T ss_dssp HHHTTCCC----------------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH---------
T ss_pred HHHhhCCC----------------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHH---------
Confidence 99999843 15899999999999 999999999999999999775221
Q ss_pred ccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHc--------CChHHHHHHHHhccccCC
Q 005990 277 LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHA--------NKMDQARELVAALPDMFP 348 (666)
Q Consensus 277 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~--------~~~~~A~~~~~~~~~~~p 348 (666)
++++.++... |++++|+..|++++...|
T Consensus 217 --------------------------------------------~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 217 --------------------------------------------YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred --------------------------------------------HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 2335555555 667777777777777777
Q ss_pred ---CCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcC
Q 005990 349 ---DSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKI 412 (666)
Q Consensus 349 ---~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 412 (666)
++..+++.+|.++...|++++|+..|++++..+|++.. ++..++.++...|++++|+..+.++
T Consensus 253 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE-PQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66677777777777777777777777777777776544 6666666666666666666655543
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=4e-17 Score=161.51 Aligned_cols=217 Identities=10% Similarity=0.053 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHhhhc-cch---hhhHHHHHHHHHh
Q 005990 37 EQAVKVADQVLSTNPSDEDAMRCKVVALIK-------ADNI-------DDALSTIQSSQK-FTF---DFNYLKAYCLYRQ 98 (666)
Q Consensus 37 ~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~---~~~~~~a~~~~~~ 98 (666)
++|+..|++++..+|+++++|+.+|..+.. .|++ ++|+..|+++.. +.| .+++.++.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999998874 5886 999999999987 554 5778999999999
Q ss_pred CCHHHHHHHHHh----cCCChh-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHH---cCChhHHHHHH
Q 005990 99 NRLDEALESLKI----QENNPA-TMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLIS---AGRASEVQKTL 170 (666)
Q Consensus 99 g~~~~A~~~l~~----~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~---~g~~~~A~~~~ 170 (666)
|++++|..+|++ .|.+.. +|..+|.++.+.|++++|+.+|++++...|......++.++.. .|++++|+.+|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999988 455665 8999999999999999999999999999888766444544443 79999999999
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHH
Q 005990 171 DSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAF 250 (666)
Q Consensus 171 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~ 250 (666)
++++..+|++..+|.++|.++...|++++|+.+|++++..++-. |+ ....+|..++.++...|++++|.
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~-------p~----~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP-------PE----KSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC-------GG----GCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC-------HH----HHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999964110 11 12258889999999999999999
Q ss_pred HHHHHHHhhCCCCH
Q 005990 251 GAYTDIIKRNLADE 264 (666)
Q Consensus 251 ~~~~~~l~~~~~~~ 264 (666)
.+++++++..|.+.
T Consensus 262 ~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 262 KVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHTTTTT
T ss_pred HHHHHHHHHccccc
Confidence 99999999999754
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.4e-17 Score=165.01 Aligned_cols=229 Identities=14% Similarity=0.113 Sum_probs=175.9
Q ss_pred CCCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch
Q 005990 14 SQPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLST--------NPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF 85 (666)
Q Consensus 14 ~~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 85 (666)
+.+|..+..++..+..+...|++++|+.+++++++. .|....++..+|.++...|++++|+..++++.....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999985 566688999999999999999999999998833210
Q ss_pred hhhHHHHHHHHHhCCHHHHHHHHHh-cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CChhH-----HHHH
Q 005990 86 DFNYLKAYCLYRQNRLDEALESLKI-QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSK-----IDSLE-----INFV 154 (666)
Q Consensus 86 ~~~~~~a~~~~~~g~~~~A~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~-----~~l~ 154 (666)
..+.. .+....++..+|.++...|++++|+.+|++++... ++... .+++
T Consensus 101 --------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 101 --------------------KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp --------------------HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred --------------------HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 00000 12245677888888888888888888888887653 22222 7788
Q ss_pred HHHHHcCChhHHHHHHHHhhhc--------CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCC--------
Q 005990 155 AGLISAGRASEVQKTLDSLRVK--------ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDD-------- 218 (666)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~-------- 218 (666)
.++...|++++|+..|++++.. .|....+++.+|.++...|++++|+.+|++++.+.+......
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 8888889999999988888776 666777899999999999999999999999998764321000
Q ss_pred ------------------CC--------ChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005990 219 ------------------NF--------AEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA 262 (666)
Q Consensus 219 ------------------~~--------~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~ 262 (666)
.. .-....+....++..+|.+|..+|++++|+.+|++++++.|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 00 000011445578999999999999999999999999987663
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.78 E-value=4e-18 Score=185.70 Aligned_cols=172 Identities=12% Similarity=0.074 Sum_probs=158.8
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHc
Q 005990 49 TNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRS 128 (666)
Q Consensus 49 ~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~ 128 (666)
..|+++++++.+|.+|..+|++++|+..|+++.++ .|++..+++.+|.+|..+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---------------------------~P~~~~a~~nLg~~l~~~ 56 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV---------------------------FPEFAAAHSNLASVLQQQ 56 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------CSCCHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------------CCCCHHHHHHHHHHHHHc
Confidence 46888999999999999999999999999998433 677889999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 005990 129 GEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLT 206 (666)
Q Consensus 129 g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 206 (666)
|++++|+..|+++++.+|++.+ .++|.++...|++++|+..|+++++.+|++.++++++|.+|...|++++|+..|++
T Consensus 57 g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 136 (723)
T 4gyw_A 57 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136 (723)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999888 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005990 207 ARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA 262 (666)
Q Consensus 207 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~ 262 (666)
+++++|+ ...++.++|.++..+|++++|++.|++++++.+.
T Consensus 137 Al~l~P~---------------~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 137 ALKLKPD---------------FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHCSC---------------CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHhCCC---------------ChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 9999954 2369999999999999999999999999987653
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.77 E-value=1.3e-16 Score=150.31 Aligned_cols=215 Identities=13% Similarity=0.069 Sum_probs=169.0
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-ChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHH
Q 005990 113 NNPATMLLKSQILYRSGEMDACVEFYQKLQKSKI-DSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTAC 189 (666)
Q Consensus 113 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 189 (666)
.++..++.+|.+++..|++++|+..|++++...| .+.. .++|.++...|++++|+..|++++..+|++..+++++|.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4678999999999999999999999999999987 5555 789999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHhHH
Q 005990 190 SLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA--DESSF 267 (666)
Q Consensus 190 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~--~~~~~ 267 (666)
++...|++++|+..|++++.+.|.. ......++.+++.+|.++..+|++++|+..|++++..+|. +...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~- 155 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGN--------ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA- 155 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTC--------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH-
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCc--------HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH-
Confidence 9999999999999999999999652 2223445578999999999999999999999999999886 3211
Q ss_pred HHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccC
Q 005990 268 AVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF 347 (666)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 347 (666)
+.+++.++...| ...++.+....
T Consensus 156 ----------------------------------------------------~~~l~~~~~~~~-----~~~~~~a~~~~ 178 (228)
T 4i17_A 156 ----------------------------------------------------LYSLGVLFYNNG-----ADVLRKATPLA 178 (228)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHH-----HHHHHHHGGGT
T ss_pred ----------------------------------------------------HHHHHHHHHHHH-----HHHHHHHHhcc
Confidence 122344444333 22334444444
Q ss_pred CCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHH
Q 005990 348 PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 396 (666)
Q Consensus 348 p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~ 396 (666)
+.+.. ...+......+.+++|+.+|+++++.+|++.. +...++++.
T Consensus 179 ~~~~~--~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~-~~~~l~~i~ 224 (228)
T 4i17_A 179 SSNKE--KYASEKAKADAAFKKAVDYLGEAVTLSPNRTE-IKQMQDQVK 224 (228)
T ss_dssp TTCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHH
T ss_pred cCCHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH-HHHHHHHHH
Confidence 43322 23344455677789999999999999998754 666666553
No 71
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.77 E-value=1.2e-17 Score=161.04 Aligned_cols=201 Identities=10% Similarity=0.030 Sum_probs=161.1
Q ss_pred CCCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHH
Q 005990 14 SQPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSD---EDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYL 90 (666)
Q Consensus 14 ~~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 90 (666)
..+|.+...++..+..++..|+|++|+..|++++..+|++ ..+++.+|.+++.+|+|++|+..|+++....|.
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~---- 84 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI---- 84 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC----
Confidence 3567889999999999999999999999999999999998 899999999999999999999999998554221
Q ss_pred HHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCChhH------------
Q 005990 91 KAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYR--------SGEMDACVEFYQKLQKSKIDSLE------------ 150 (666)
Q Consensus 91 ~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~p~~~~------------ 150 (666)
.+....+++.+|.+++. .|++++|+..|++++...|++..
T Consensus 85 --------------------~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 85 --------------------DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR 144 (261)
T ss_dssp --------------------CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred --------------------CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence 11123455666666666 67777777777777766665432
Q ss_pred -------HHHHHHHHHcCChhHHHHHHHHhhhcCCC---hHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHh
Q 005990 151 -------INFVAGLISAGRASEVQKTLDSLRVKATS---SFELAYNTACSLAEM----------NKYTEAEQLLLTARRI 210 (666)
Q Consensus 151 -------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~----------g~~~~A~~~l~~a~~~ 210 (666)
.++|.+|...|++++|+..|++++...|+ ..++++.+|.+|... |++++|+..|++++..
T Consensus 145 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 145 AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 46788899999999999999999998887 678999999999987 9999999999999999
Q ss_pred hhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHH
Q 005990 211 GQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAF 250 (666)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~ 250 (666)
.|++ +....+...++.++..+++++++.
T Consensus 225 ~p~~------------~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 225 FPDS------------PLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp CTTC------------THHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCC------------hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9753 223356777788887777766543
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.77 E-value=9.5e-17 Score=163.98 Aligned_cols=246 Identities=14% Similarity=0.016 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 005990 182 ELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNL 261 (666)
Q Consensus 182 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~ 261 (666)
..++.+|..++..|++++|+.+|++++.+.... +++ +..+.+++.+|.+|..+|++++|+..+++++...+
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~--~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 172 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV-------SDD--IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ 172 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-------CCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC-------CCh--HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999987542 111 34567999999999999999999999999987654
Q ss_pred CCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 005990 262 ADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVA 341 (666)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~ 341 (666)
.... .......+..+++.++...|++++|+..+.
T Consensus 173 ~~~~----------------------------------------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 206 (378)
T 3q15_A 173 NHPL----------------------------------------------YSIRTIQSLFVIAGNYDDFKHYDKALPHLE 206 (378)
T ss_dssp TSTT----------------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCC----------------------------------------------chhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3210 001112244667999999999999999999
Q ss_pred hccccCC---C---CchHHHHHHHHHHhhCChhHHHHHHHHHHh-----hCCChhHHHHHHHHHHHHHcCChhHHHHHHh
Q 005990 342 ALPDMFP---D---SVMPLLLQAAVLVRENKAGKAEELLGQFAE-----KLPDKSKIILLARAQVAAAANHPFIAAESLA 410 (666)
Q Consensus 342 ~~~~~~p---~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~-----~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~ 410 (666)
+++...+ + ...++..+|.++...|++++|+.+|++++. .+|.. ..++..+|.++...|++++|+.+++
T Consensus 207 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~ 285 (378)
T 3q15_A 207 AALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIE 285 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9887532 2 125678889999999999999999999998 67776 5589999999999999999999999
Q ss_pred cCcCCCC---C---hhHHHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHH
Q 005990 411 KIPDIQH---M---PATVATLVALKERAGD---IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASH 481 (666)
Q Consensus 411 ~~~~~~~---~---~~~~~~l~~~~~~~g~---~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 481 (666)
+++++.+ + ...+..++.+|...++ +.+|+.++++. ...+....++..+|.+|...|++++|..
T Consensus 286 ~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~--------~~~~~~~~~~~~la~~y~~~g~~~~A~~ 357 (378)
T 3q15_A 286 EGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK--------NLHAYIEACARSAAAVFESSCHFEQAAA 357 (378)
T ss_dssp HHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC--------CChhHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9877543 2 2235677888888888 55555555542 1223344577789999999999999999
Q ss_pred HHHHHHHhcC
Q 005990 482 LFEELVKTHG 491 (666)
Q Consensus 482 ~~~~~l~~~p 491 (666)
+|++++....
T Consensus 358 ~~~~al~~~~ 367 (378)
T 3q15_A 358 FYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999997643
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=4.8e-17 Score=160.96 Aligned_cols=222 Identities=11% Similarity=0.059 Sum_probs=189.9
Q ss_pred hHHHHHHHHhhhcCCChHHHHHHHHHHHHH-------hcCH-------HHHHHHHHHHHH-hhhhhccCCCCChhhHhhh
Q 005990 164 SEVQKTLDSLRVKATSSFELAYNTACSLAE-------MNKY-------TEAEQLLLTARR-IGQETLTDDNFAEDDIEIE 228 (666)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~l~~a~~-~~~~~~~~~~~~~~~~~~~ 228 (666)
++|+..|++++..+|.++++|+++|.++.. .|++ ++|+..|++|+. +.|.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~--------------- 97 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK--------------- 97 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT---------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc---------------
Confidence 678899999999999999999999999874 5886 999999999999 6743
Q ss_pred hhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhh
Q 005990 229 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD 308 (666)
Q Consensus 229 ~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~ 308 (666)
...+|..+|.++...|++++|..+|++++...|.+...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~------------------------------------------ 135 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL------------------------------------------ 135 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHH------------------------------------------
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccH------------------------------------------
Confidence 22589999999999999999999999999988865310
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHh-hCChhHHHHHHHHHHhhCCChhHH
Q 005990 309 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR-ENKAGKAEELLGQFAEKLPDKSKI 387 (666)
Q Consensus 309 ~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~ 387 (666)
++.+++.++...|++++|+.+|++++...|.+..+++..+.+... .|++++|+.+|++++..+|++..
T Consensus 136 ----------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~- 204 (308)
T 2ond_A 136 ----------VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE- 204 (308)
T ss_dssp ----------HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH-
T ss_pred ----------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-
Confidence 123346777888999999999999999999887777766655443 79999999999999999999765
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhcCcCC---CC--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 005990 388 ILLARAQVAAAANHPFIAAESLAKIPDI---QH--MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAM 453 (666)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~ 453 (666)
++..++.++...|++++|..+|++++.. .| ...+|..++.++...|+++.|..+++++++.+|++.
T Consensus 205 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 8999999999999999999999999985 33 456788899999999999999999999999987654
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.5e-17 Score=164.81 Aligned_cols=269 Identities=13% Similarity=0.028 Sum_probs=184.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHH-hcCCChhHHHHHHHHHHHc
Q 005990 50 NPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLK-IQENNPATMLLKSQILYRS 128 (666)
Q Consensus 50 ~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~-~~~~~~~~~~~la~~~~~~ 128 (666)
+|.+..++..+|.++...|++++|+.+|+++..... .... ..+....++..+|.++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--------------------~~~~~~~~~~~~~~~~la~~~~~~ 82 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLE--------------------KTSGHDHPDVATMLNILALVYRDQ 82 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------------HHHCSSSHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------------------HHcCCCCHHHHHHHHHHHHHHHHC
Confidence 466688999999999999999999999999833210 0000 0122457788999999999
Q ss_pred CCHHHHHHHHHHHHhhC-----CCh---hH--HHHHHHHHHcCChhHHHHHHHHhhhcC--------CChHHHHHHHHHH
Q 005990 129 GEMDACVEFYQKLQKSK-----IDS---LE--INFVAGLISAGRASEVQKTLDSLRVKA--------TSSFELAYNTACS 190 (666)
Q Consensus 129 g~~~~A~~~~~~~l~~~-----p~~---~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~ 190 (666)
|++++|+.+|++++... ++. .. .+++.++...|++++|+..|++++... +....+++++|.+
T Consensus 83 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 83 NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALL 162 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99999999999998752 222 22 889999999999999999999998763 6677889999999
Q ss_pred HHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHH
Q 005990 191 LAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVA 270 (666)
Q Consensus 191 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~ 270 (666)
+...|++++|+.+|++++.+.......+ .+....++..+|.++..+|++++|+.+|++++...+....
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 230 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPD-------DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF----- 230 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTT-------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-----
Confidence 9999999999999999999854321100 1334478999999999999999999999999875432100
Q ss_pred HhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCC
Q 005990 271 VNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS 350 (666)
Q Consensus 271 ~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 350 (666)
..... ...............+..+...+.+.++...+..+....|..
T Consensus 231 ----~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 277 (311)
T 3nf1_A 231 ----GSVDD-----------------------------ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTV 277 (311)
T ss_dssp ----C-----------------------------------CCHHHHHHHHHHC-------CCSCCCC---------CHHH
T ss_pred ----CCCCc-----------------------------chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchH
Confidence 00000 000000001111222444556677777777777777777777
Q ss_pred chHHHHHHHHHHhhCChhHHHHHHHHHHhhCCC
Q 005990 351 VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD 383 (666)
Q Consensus 351 ~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~ 383 (666)
..++..+|.++...|++++|+.+|+++++..|.
T Consensus 278 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 278 TTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 788888888888888888888888888876653
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.76 E-value=4.5e-16 Score=158.75 Aligned_cols=317 Identities=14% Similarity=0.006 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHH
Q 005990 55 DAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDAC 134 (666)
Q Consensus 55 ~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A 134 (666)
.++..++.+++..|++++|+..++++....+..... ....++..+|.++...|++++|
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------~~~~~~~~l~~~~~~~g~~~~A 72 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY----------------------SRIVATSVLGEVLHCKGELTRS 72 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH----------------------HHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchh----------------------HHHHHHHHHHHHHHhcCcHHHH
Confidence 455666777777777777777777763321100000 0113567788888888888888
Q ss_pred HHHHHHHHhhCCCh--h-H-----HHHHHHHHHcCChhHHHHHHHHhhhcC--------CChHHHHHHHHHHHHHhcCHH
Q 005990 135 VEFYQKLQKSKIDS--L-E-----INFVAGLISAGRASEVQKTLDSLRVKA--------TSSFELAYNTACSLAEMNKYT 198 (666)
Q Consensus 135 ~~~~~~~l~~~p~~--~-~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~ 198 (666)
+..|++++...+.. . . .+++.++...|++++|+..|++++... |....++.++|.++...|+++
T Consensus 73 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (373)
T 1hz4_A 73 LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 152 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHH
Confidence 88888887653321 1 1 677888888899999988888887643 345567888999999999999
Q ss_pred HHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhcc
Q 005990 199 EAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALK 278 (666)
Q Consensus 199 ~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 278 (666)
+|+.++++++.+.+... + +....++..+|.++...|++++|..++++++...+...
T Consensus 153 ~A~~~~~~al~~~~~~~------~----~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~-------------- 208 (373)
T 1hz4_A 153 EAEASARSGIEVLSSYQ------P----QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK-------------- 208 (373)
T ss_dssp HHHHHHHHHHHHTTTSC------G----GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC--------------
T ss_pred HHHHHHHHHHHHhhccC------c----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC--------------
Confidence 99999999999986421 1 11346888999999999999999999999986533210
Q ss_pred CCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCc----hHH
Q 005990 279 GPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV----MPL 354 (666)
Q Consensus 279 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~ 354 (666)
...... ..+....+.++...|++++|...+..+....+... ..+
T Consensus 209 ---~~~~~~-----------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 209 ---YHSDWI-----------------------------SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp ---CCHHHH-----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred ---cchhHH-----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 000000 00011224557788999999999999887665432 133
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcC
Q 005990 355 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAG 433 (666)
Q Consensus 355 ~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g 433 (666)
..++.++...|++++|+..++.++...+.. |. .+ ...++..++.++...|
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~---------------~~--------------~~~~~~~~~~la~~~~~~g 307 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSL---------------RL--------------MSDLNRNLLLLNQLYWQAG 307 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------------TC--------------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhC---------------cc--------------hhhHHHHHHHHHHHHHHhC
Confidence 455666666666666666666655432110 00 00 1124456677777888
Q ss_pred ChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC
Q 005990 434 DIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 434 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
++++|...|++++...+.... ..++...| .....+++.++...|-
T Consensus 308 ~~~~A~~~l~~al~~~~~~g~------------~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 308 RKSDAQRVLLDALKLANRTGF------------ISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC------------CHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHHhccccH------------HHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 888888888888777643211 12222333 5566677777776663
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.76 E-value=1.3e-15 Score=155.18 Aligned_cols=295 Identities=13% Similarity=0.042 Sum_probs=211.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhc
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMN 195 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 195 (666)
.++..+|.++...|++++|+..+++++...|..... ....++.++|.++...|
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------------~~~~~~~~l~~~~~~~g 67 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY---------------------------SRIVATSVLGEVLHCKG 67 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH---------------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchh---------------------------HHHHHHHHHHHHHHhcC
Confidence 344555666666666666666666655443321100 01236788899999999
Q ss_pred CHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhh
Q 005990 196 KYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLV 275 (666)
Q Consensus 196 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~ 275 (666)
++++|+..|++++.+.+.. .+. .....++..+|.++..+|++++|+..|++++...+...
T Consensus 68 ~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~----------- 127 (373)
T 1hz4_A 68 ELTRSLALMQQTEQMARQH--------DVW-HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH----------- 127 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHT--------TCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------
T ss_pred cHHHHHHHHHHHHHHHHhc--------CcH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc-----------
Confidence 9999999999999988652 111 12335678999999999999999999999986542110
Q ss_pred hccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCC-----
Q 005990 276 ALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS----- 350 (666)
Q Consensus 276 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----- 350 (666)
............+++.++...|++++|...+.+++...+..
T Consensus 128 ----------------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 128 ----------------------------------LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp ----------------------------------CTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred ----------------------------------cccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 00000111234556889999999999999999988766542
Q ss_pred chHHHHHHHHHHhhCChhHHHHHHHHHHhhCCC--hhHHHH----HHHHHHHHHcCChhHHHHHHhcCcCCCC-C----h
Q 005990 351 VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD--KSKIIL----LARAQVAAAANHPFIAAESLAKIPDIQH-M----P 419 (666)
Q Consensus 351 ~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~--~~~~~~----~~la~~~~~~g~~~~A~~~l~~~~~~~~-~----~ 419 (666)
...+..++.++...|++++|+.++++++...+. ...... ..++.++...|++++|..++++++...+ . .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 246778899999999999999999999876322 111111 1345568899999999999999988665 2 2
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC
Q 005990 420 ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
..+..++.++...|++++|...+++++...+.... ......++..+|.++...|++++|...|++++...+.
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRL-MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 23578899999999999999999999988765321 1222336667899999999999999999999987653
No 77
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.76 E-value=2.1e-15 Score=162.28 Aligned_cols=427 Identities=10% Similarity=0.052 Sum_probs=297.6
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHhhhccc---hhhh
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADN---IDDALSTIQSSQKFT---FDFN 88 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~---~~~A~~~~~~~~~~~---~~~~ 88 (666)
.+|.++..+...+......++++.+..+|++++...|.....|...+....+.+. ++.+..+|+++.... +.+.
T Consensus 61 ~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 61 EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 6788899999999988889999999999999999999999999999999999999 999999999996654 4444
Q ss_pred HHHHHHHH--HhCCH----HHHH----HHHHh--------cCCChhHHHHHHHHHH---------HcCCHHHHHHHHHHH
Q 005990 89 YLKAYCLY--RQNRL----DEAL----ESLKI--------QENNPATMLLKSQILY---------RSGEMDACVEFYQKL 141 (666)
Q Consensus 89 ~~~a~~~~--~~g~~----~~A~----~~l~~--------~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~ 141 (666)
+...|+-+ +.+.. +++. ++|+. .+....+|........ ..++++.+..+|+++
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 44444433 33332 2232 34443 3445667766666543 244577889999999
Q ss_pred HhhCCChhH------HHHHH--------HH--HHcCChhHHHHHHHHh------hhc-CCC-------------------
Q 005990 142 QKSKIDSLE------INFVA--------GL--ISAGRASEVQKTLDSL------RVK-ATS------------------- 179 (666)
Q Consensus 142 l~~~p~~~~------~~l~~--------~~--~~~g~~~~A~~~~~~~------~~~-~~~------------------- 179 (666)
+.......+ ..... -. ....+|+.|...+... +.. .|.
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 864222222 00000 00 0012334444444331 111 111
Q ss_pred hHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHH-H
Q 005990 180 SFELAYNTACSLAEMN-------KYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAF-G 251 (666)
Q Consensus 180 ~~~~~~~la~~~~~~g-------~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~-~ 251 (666)
....|..........+ ........|++++..++. ...+|+..+..+...|+.++|. .
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~---------------~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF---------------APEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT---------------CHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC---------------CHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1234444433322221 134456789999998854 2359999999999999999997 9
Q ss_pred HHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcC
Q 005990 252 AYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHAN 331 (666)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~ 331 (666)
+|++++...|.+..++ ...+.+....|
T Consensus 366 il~rAi~~~P~s~~Lw-----------------------------------------------------l~~a~~ee~~~ 392 (679)
T 4e6h_A 366 YLKLGQQCIPNSAVLA-----------------------------------------------------FSLSEQYELNT 392 (679)
T ss_dssp HHHHHHHHCTTCHHHH-----------------------------------------------------HHHHHHHHHTT
T ss_pred HHHHHHHhCCCCHHHH-----------------------------------------------------HHHHHHHHHhC
Confidence 9999999888664221 22255555667
Q ss_pred ChHHHHHHHHhccccC-----------CC-----------CchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHH
Q 005990 332 KMDQARELVAALPDMF-----------PD-----------SVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL 389 (666)
Q Consensus 332 ~~~~A~~~~~~~~~~~-----------p~-----------~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~ 389 (666)
+++.|..+|+.++... |. ...+|...+.+..+.|..+.|..+|.++++..|.....++
T Consensus 393 ~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~ly 472 (679)
T 4e6h_A 393 KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIY 472 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHH
Confidence 7777777777766532 42 2346777777888889999999999999887333223366
Q ss_pred HHHHHHHHHcC-ChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 005990 390 LARAQVAAAAN-HPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAA 467 (666)
Q Consensus 390 ~~la~~~~~~g-~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~ 467 (666)
...|.+....+ +++.|..+|+.+++..| ++.+|...+.+....|+.+.|..+|++++...+. ......+|....
T Consensus 473 i~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~----~~~~~~lw~~~~ 548 (679)
T 4e6h_A 473 LENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD----SHLLKMIFQKVI 548 (679)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS----TTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC----HHHHHHHHHHHH
Confidence 66677766665 48999999999999888 8888888888999999999999999999876531 124456888888
Q ss_pred HHHHhCCChhhHHHHHHHHHHhcCChHHHHHHHHhhccCChhhHHH
Q 005990 468 SFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDKAES 513 (666)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~l~~l~~~~~~~d~~~a~~ 513 (666)
.+-...|+.+.+..+++++.+..|+...+..++.-|...+......
T Consensus 549 ~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~~~~~~~i~~ 594 (679)
T 4e6h_A 549 FFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYKVLDVNYLQR 594 (679)
T ss_dssp HHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTCBTTBCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCcchhHHH
Confidence 9999999999999999999999999777777888887666655444
No 78
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=9.4e-17 Score=159.97 Aligned_cols=360 Identities=14% Similarity=0.064 Sum_probs=186.5
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccc--hhhhHHHHHHHHHh
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFT--FDFNYLKAYCLYRQ 98 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~a~~~~~~ 98 (666)
..+...+..+...|++++|+..|.++ .|+.++..++.++...|+|++|+.+++.+.+.. +.....+++||.++
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Kl 107 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 107 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHh
Confidence 47778899999999999999999764 567799999999999999999999998885432 34566899999999
Q ss_pred CCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCC
Q 005990 99 NRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKAT 178 (666)
Q Consensus 99 g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 178 (666)
|+++++.++++. | +...|..+|..++..|+|++|..+|..+ +.-..++.++...|++++|++.++++
T Consensus 108 g~l~e~e~f~~~-p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a------~n~~~LA~~L~~Lg~yq~AVea~~KA----- 174 (449)
T 1b89_A 108 NRLAELEEFING-P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKA----- 174 (449)
T ss_dssp -CHHHHTTTTTC-C-----------------CTTTHHHHHHHT------TCHHHHHHHHHTTTCHHHHHHHHHHH-----
T ss_pred CCHHHHHHHHcC-C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh------hhHHHHHHHHHHhccHHHHHHHHHHc-----
Confidence 999999988864 3 3459999999999999999999999976 11278999999999999999999998
Q ss_pred ChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005990 179 SSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 179 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~ 258 (666)
.++.+|.....+++..|+|+.|..+.... ... |++ ...+..+|...|++++|+.+++.++.
T Consensus 175 ~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-~~~----------ad~--------l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 175 NSTRTWKEVCFACVDGKEFRLAQMCGLHI-VVH----------ADE--------LEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-TTC----------HHH--------HHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHcCcHHHHHHHHHHH-HhC----------Hhh--------HHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 36789999999999999999997766642 233 333 22578889999999999999999999
Q ss_pred hCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHH------HHHHHHHHHHHHHHcCC
Q 005990 259 RNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQ------REAIYANRVLLLLHANK 332 (666)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q------~~~~~~~~a~~~~~~~~ 332 (666)
.++.....+..+. .+.+........+.++.+ ..+...+. ...++..+..+|...++
T Consensus 236 le~ah~~~ftel~-il~~ky~p~k~~ehl~~~-----------------~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e 297 (449)
T 1b89_A 236 LERAHMGMFTELA-ILYSKFKPQKMREHLELF-----------------WSRVNIPKVLRAAEQAHLWAELVFLYDKYEE 297 (449)
T ss_dssp STTCCHHHHHHHH-HHHHTTCHHHHHHHHHHH-----------------STTSCHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHH-HHHHhcCHHHHHHHHHHH-----------------HHHhcCcHHHHHHHHHHHHHHHHHHHHhhch
Confidence 9987766554432 222222222223333333 12222211 12245667889999999
Q ss_pred hHHHHHHHHhcccc------------CCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcC
Q 005990 333 MDQARELVAALPDM------------FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN 400 (666)
Q Consensus 333 ~~~A~~~~~~~~~~------------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g 400 (666)
|+.|...+-+.... .+.+.++++.....|. +....++..|..++.-.-++ ...+.++...|
T Consensus 298 ~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~-----~r~v~~~~~~~ 370 (449)
T 1b89_A 298 YDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDH-----TRAVNYFSKVK 370 (449)
T ss_dssp HHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCH-----HHHHHHHHHTT
T ss_pred HHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCc-----HHHHHHHHHcC
Confidence 99998877665433 3445555555544444 55666677777666332222 22455667888
Q ss_pred ChhHHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHH
Q 005990 401 HPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLD 443 (666)
Q Consensus 401 ~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 443 (666)
+..-...+|+.+... .+..+...+-.+|....+++.-....+
T Consensus 371 ~l~l~~~yl~~v~~~-n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 371 QLPLVKPYLRSVQNH-NNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp CTTTTHHHHHHHHTT-CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 888888888776543 256677888899999999975444433
No 79
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.74 E-value=3.8e-17 Score=151.31 Aligned_cols=179 Identities=15% Similarity=0.143 Sum_probs=137.7
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHh
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQ 98 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~ 98 (666)
++..++..+..++..|+|++|+..|++++..+|+++.+++..+. . ......+.+.+.+|.++...
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~----------~~~~~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----D----------KNSEISSKLATELALAYKKN 67 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----C----------TTSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----c----------chhhhhHHHHHHHHHHHHHC
Confidence 67899999999999999999999999999999999998888221 0 00111122333455555555
Q ss_pred CCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCC--hhHHHHHH
Q 005990 99 NRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGR--ASEVQKTL 170 (666)
Q Consensus 99 g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~--~~~A~~~~ 170 (666)
|++++|+..+++ .|++..++..+|.++...|++++|+..|++++..+|++.. .++|.+|...|+ ...+...+
T Consensus 68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 147 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDY 147 (208)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 555555554443 6788999999999999999999999999999999999888 888888876654 45567777
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 171 DSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 171 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
.+++...|. ..+++++|.++...|+|++|+.+|++++++.|.
T Consensus 148 ~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 148 KKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp C---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 777654433 347889999999999999999999999999964
No 80
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.74 E-value=1e-16 Score=154.59 Aligned_cols=214 Identities=14% Similarity=0.086 Sum_probs=159.3
Q ss_pred CCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCCh---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCC
Q 005990 145 KIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSS---FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDN 219 (666)
Q Consensus 145 ~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~ 219 (666)
.|++.. +.+|..+...|++++|+..|++++...|++ .++++.+|.+++..|++++|+..|++++.+.|.+
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~----- 85 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID----- 85 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC-----
Confidence 344444 667777777777777777777777777776 8899999999999999999999999999998643
Q ss_pred CChhhHhhhhhhHHHHHHHHHHH--------cCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhH
Q 005990 220 FAEDDIEIELAPIAVQLAYVQQL--------LGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLD 291 (666)
Q Consensus 220 ~~~~~~~~~~~~~~~~la~~~~~--------~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~ 291 (666)
+....+++.+|.++.. +|++++|+..|++++...|++.... .+...+.
T Consensus 86 -------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-----------------~a~~~~~ 141 (261)
T 3qky_A 86 -------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD-----------------DATQKIR 141 (261)
T ss_dssp -------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH-----------------HHHHHHH
T ss_pred -------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH-----------------HHHHHHH
Confidence 2233689999999999 9999999999999999999875322 2222221
Q ss_pred HHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCc---hHHHHHHHHHHhh----
Q 005990 292 RIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRE---- 364 (666)
Q Consensus 292 ~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~---- 364 (666)
.+. .......++++.++...|++++|+..|++++..+|++. .+++.+|.++...
T Consensus 142 ~~~-------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~ 202 (261)
T 3qky_A 142 ELR-------------------AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQS 202 (261)
T ss_dssp HHH-------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTS
T ss_pred HHH-------------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccc
Confidence 110 00111246668888999999999999999988888853 5778888888866
Q ss_pred ------CChhHHHHHHHHHHhhCCChh--HHHHHHHHHHHHHcCChhHHH
Q 005990 365 ------NKAGKAEELLGQFAEKLPDKS--KIILLARAQVAAAANHPFIAA 406 (666)
Q Consensus 365 ------g~~~~A~~~l~~~~~~~p~~~--~~~~~~la~~~~~~g~~~~A~ 406 (666)
|++++|+..|++++..+|++. ..+...++.++...++++.+.
T Consensus 203 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 203 VRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 888899999999999888864 234555666666666555443
No 81
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.73 E-value=3.8e-17 Score=179.32 Aligned_cols=172 Identities=11% Similarity=0.054 Sum_probs=138.2
Q ss_pred hhhccHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHH
Q 005990 31 IERSEFEQAVKVADQVL--------STNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLD 102 (666)
Q Consensus 31 ~~~~~~~~A~~~~~~~l--------~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 102 (666)
+..|++++|+..+++++ +.+|++..+++.+|.+++.+|++++|+..|+++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-------------------- 461 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE-------------------- 461 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--------------------
Confidence 55666666666666666 66666666666666666666666666666666522
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCCh
Q 005990 103 EALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSS 180 (666)
Q Consensus 103 ~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 180 (666)
..|++..+++.+|.+++..|++++|+..|+++++.+|++.. .+++.++...|++++ +..|++++..+|++
T Consensus 462 -------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~ 533 (681)
T 2pzi_A 462 -------RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV 533 (681)
T ss_dssp -------HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC
T ss_pred -------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch
Confidence 26778899999999999999999999999999999998877 899999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCC
Q 005990 181 FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGN 245 (666)
Q Consensus 181 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 245 (666)
..+++++|.++...|++++|+..|++++++++. ...+++.+|.++...|+
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---------------~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH---------------FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT---------------HHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc---------------cHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999998843 23688999999877665
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.71 E-value=1.4e-15 Score=148.92 Aligned_cols=206 Identities=9% Similarity=-0.035 Sum_probs=150.3
Q ss_pred HHHHcCChhHHHHHHHHhhhcC------CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhh
Q 005990 156 GLISAGRASEVQKTLDSLRVKA------TSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIEL 229 (666)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 229 (666)
+|...|++++|+..|++++... +....++.++|.+|...|++++|+.+|++++.+.+.. .+. ...
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--------g~~-~~~ 116 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--------GQF-RRG 116 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------TCH-HHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--------CCH-HHH
Confidence 3445555555555555555432 1235688999999999999999999999999998642 111 223
Q ss_pred hhHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhh
Q 005990 230 APIAVQLAYVQQLL-GNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD 308 (666)
Q Consensus 230 ~~~~~~la~~~~~~-g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~ 308 (666)
+.++..+|.+|... |++++|+..|++++.+.|.+. +
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~-----------------~-------------------------- 153 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ-----------------S-------------------------- 153 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-----------------C--------------------------
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC-----------------C--------------------------
Confidence 46899999999996 999999999999998765321 0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCch-------HHHHHHHHHHhhCChhHHHHHHHHHHhhC
Q 005990 309 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM-------PLLLQAAVLVRENKAGKAEELLGQFAEKL 381 (666)
Q Consensus 309 ~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~~a~~~~~~g~~~~A~~~l~~~~~~~ 381 (666)
......++.+++.++...|++++|+..+++++...|++.. .++.++.++...|++++|+..|++++..+
T Consensus 154 ----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 154 ----VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred ----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 0001123456689999999999999999999998887643 46778899999999999999999999988
Q ss_pred CChhHH----HHHHHHHHHH--HcCChhHHHHHHhcCcCCCC
Q 005990 382 PDKSKI----ILLARAQVAA--AANHPFIAAESLAKIPDIQH 417 (666)
Q Consensus 382 p~~~~~----~~~~la~~~~--~~g~~~~A~~~l~~~~~~~~ 417 (666)
|..... .+..++..+. ..+++++|+..|++++.++|
T Consensus 230 p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 230 PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp --------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 874321 2333444443 45779999999999988887
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.70 E-value=2.3e-16 Score=154.57 Aligned_cols=206 Identities=10% Similarity=0.028 Sum_probs=153.1
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccc---------hhhhHHHHHHHHHhCCHHHHH
Q 005990 35 EFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFT---------FDFNYLKAYCLYRQNRLDEAL 105 (666)
Q Consensus 35 ~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~a~~~~~~g~~~~A~ 105 (666)
++++|+..|+++ |.+|...|+|++|+..|.++..+. ...+..+|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 367777776665 456777788888888777774431 235567777777888888777
Q ss_pred HHHHhcC-------C---ChhHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCh------hH--HHHHHHHHHcCChhHH
Q 005990 106 ESLKIQE-------N---NPATMLLKSQILYRS-GEMDACVEFYQKLQKSKIDS------LE--INFVAGLISAGRASEV 166 (666)
Q Consensus 106 ~~l~~~~-------~---~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~--~~l~~~~~~~g~~~~A 166 (666)
..+++.. + ...++..+|.+|... |++++|+.+|++++...|.. .. .++|.++...|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 7776621 1 145788999999996 99999999999999876643 11 7889999999999999
Q ss_pred HHHHHHhhhcCCChHH-------HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHH
Q 005990 167 QKTLDSLRVKATSSFE-------LAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYV 239 (666)
Q Consensus 167 ~~~~~~~~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 239 (666)
+..|++++...|++.. +++++|.++...|++++|+.+|++++.+.|.... ......+..++..
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~----------~~~~~~l~~l~~~ 247 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD----------SRESNFLKSLIDA 247 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC----------cHHHHHHHHHHHH
Confidence 9999999998876532 6889999999999999999999999998865321 1111345556665
Q ss_pred HH--HcCChHHHHHHHHHHHhhCCCCH
Q 005990 240 QQ--LLGNTQEAFGAYTDIIKRNLADE 264 (666)
Q Consensus 240 ~~--~~g~~~eA~~~~~~~l~~~~~~~ 264 (666)
+. ..+++++|+..|++++.++|...
T Consensus 248 ~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 248 VNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp HHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 54 46789999999999988877554
No 84
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.70 E-value=7.9e-16 Score=144.47 Aligned_cols=207 Identities=11% Similarity=0.039 Sum_probs=155.6
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhhccch------hhhH
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSD---EDAMRCKVVALIKADNIDDALSTIQSSQKFTF------DFNY 89 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~ 89 (666)
+...++..+..++..|+|++|+..|++++..+|.+ ..+++.+|.+++.+|+|++|+..|+++....| ..++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 46789999999999999999999999999999876 47999999999999999999999999965543 2567
Q ss_pred HHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHH
Q 005990 90 LKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKT 169 (666)
Q Consensus 90 ~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~ 169 (666)
.+|.+++.+|.. ....+..++.++...|++++|+..|+++++..|++.....+...
T Consensus 83 ~~g~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~------------ 138 (225)
T 2yhc_A 83 MRGLTNMALDDS------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKR------------ 138 (225)
T ss_dssp HHHHHHHHHHC--------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHH------------
T ss_pred HHHHHHHhhhhh------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHH------------
Confidence 778887776532 12234456777777899999999999999999987652111100
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHH
Q 005990 170 LDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEA 249 (666)
Q Consensus 170 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA 249 (666)
+..+ ........+.+|.+|+..|++++|+..|+++++..|.+ +....+++.+|.++..+|++++|
T Consensus 139 l~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------------~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 139 LVFL---KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDT------------QATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTS------------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCC------------CccHHHHHHHHHHHHHcCCcHHH
Confidence 0000 01112345788999999999999999999999998653 12336899999999999999999
Q ss_pred HHHHHHHHhhCCCCH
Q 005990 250 FGAYTDIIKRNLADE 264 (666)
Q Consensus 250 ~~~~~~~l~~~~~~~ 264 (666)
+..++.+....|.+.
T Consensus 204 ~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 204 EKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHCCSCCC
T ss_pred HHHHHHHHhhCCCch
Confidence 999999998888663
No 85
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.70 E-value=2.8e-15 Score=145.12 Aligned_cols=238 Identities=11% Similarity=0.033 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHhhhccH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHhhhccch---hhhHHHHH
Q 005990 20 IEDLFTSLNRHIERSEF-EQAVKVADQVLSTNPSDEDAMRCKVVALIKAD--NIDDALSTIQSSQKFTF---DFNYLKAY 93 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~-~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g--~~~~A~~~~~~~~~~~~---~~~~~~a~ 93 (666)
...++.........|++ ++|+.+++++|.++|++..+|+.++.++..+| ++++++.+++.+...+| .++..++.
T Consensus 32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~ 111 (306)
T 3dra_A 32 YKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQL 111 (306)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 35667777777777877 58999999999999999999999999999999 99999999999977665 57778888
Q ss_pred HH----HHh---CCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCChhH--HHHHHHHH
Q 005990 94 CL----YRQ---NRLDEALESLKI----QENNPATMLLKSQILYRSGEMD--ACVEFYQKLQKSKIDSLE--INFVAGLI 158 (666)
Q Consensus 94 ~~----~~~---g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~~l~~~p~~~~--~~l~~~~~ 158 (666)
++ ..+ +++++++.++++ .|.+..+|+..+.++...|.++ ++++++.+++..+|.+.. .+.+.++.
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 88 667 789999988876 7889999999999999999999 999999999999999888 66777777
Q ss_pred HcCC------hhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHhhhhhccCCCCChhhHhhhhhh
Q 005990 159 SAGR------ASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTE-AEQLLLTARRIGQETLTDDNFAEDDIEIELAP 231 (666)
Q Consensus 159 ~~g~------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 231 (666)
..+. ++++++.+.+++..+|.+..+|+.++.++...|+... ...++.+++.+... .+....
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~------------~~~s~~ 259 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD------------QVTSSF 259 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT------------EESCHH
T ss_pred hccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC------------CCCCHH
Confidence 7776 8999999999999999999999999999999998555 44566666554410 012235
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh-hCCCCHhHHHH
Q 005990 232 IAVQLAYVQQLLGNTQEAFGAYTDIIK-RNLADESSFAV 269 (666)
Q Consensus 232 ~~~~la~~~~~~g~~~eA~~~~~~~l~-~~~~~~~~~~~ 269 (666)
++..++.+|...|+.++|+++|+.+.. .+|.....+..
T Consensus 260 al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 260 ALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHH
Confidence 889999999999999999999999996 79977655543
No 86
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.69 E-value=1.5e-15 Score=137.48 Aligned_cols=168 Identities=15% Similarity=0.115 Sum_probs=150.7
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHh
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQ 98 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~ 98 (666)
....++..+..+...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------------- 71 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--------------- 71 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------
Confidence 35667788888889999999999999999999988889999999999999999999988887332
Q ss_pred CCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhc
Q 005990 99 NRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVK 176 (666)
Q Consensus 99 g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 176 (666)
.|.+..++..+|.++...|++++|+.+|++++...|++.. ..++.++...|++++|+..|++++..
T Consensus 72 ------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 72 ------------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp ------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 4567788899999999999999999999999999888777 88899999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 177 ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 177 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
.|.+..+++.+|.++...|++++|+.+|++++.+.+.
T Consensus 140 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 140 RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999865
No 87
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.69 E-value=5.4e-16 Score=143.54 Aligned_cols=184 Identities=11% Similarity=0.064 Sum_probs=145.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHH
Q 005990 53 DEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMD 132 (666)
Q Consensus 53 ~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~ 132 (666)
+.+.++..|.+++..|+|++|+..|+++....|.... ++......... .....+...+|.++...|+++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~ 71 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE--MYYWTNVDKNS---------EISSKLATELALAYKKNRNYD 71 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH--HHHHHHSCTTS---------HHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH--HHHHhhhcchh---------hhhHHHHHHHHHHHHHCCCHH
Confidence 5678888999999999999999999998766553211 11111111100 002344556999999999999
Q ss_pred HHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcC--HHHHHHHHHHHH
Q 005990 133 ACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNK--YTEAEQLLLTAR 208 (666)
Q Consensus 133 ~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~l~~a~ 208 (666)
+|+..|+++++.+|++.. .++|.++...|++++|+..|++++..+|++.++++++|.+|+..|+ ...+...|.+++
T Consensus 72 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 72 KAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 999999999999999888 9999999999999999999999999999999999999999987765 455667777765
Q ss_pred HhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 005990 209 RIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLAD 263 (666)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~ 263 (666)
... +.. .+++.+|.++...|++++|+..|++++.++|+.
T Consensus 152 ~~~----------~~~------~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 152 SPT----------KMQ------YARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp CCC----------HHH------HHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred CCC----------chh------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 333 222 377889999999999999999999999999975
No 88
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.69 E-value=3.3e-13 Score=145.23 Aligned_cols=419 Identities=11% Similarity=0.118 Sum_probs=275.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccc---hhhhHHHHHHHHHhCC---HHHHHHHHH
Q 005990 36 FEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFT---FDFNYLKAYCLYRQNR---LDEALESLK 109 (666)
Q Consensus 36 ~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~a~~~~~~g~---~~~A~~~l~ 109 (666)
..+.+..+++.+..+|.|...|..++..+...+.++.+..+|+++...- ..+|...+....+.+. ++.+..+|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 4556778899999999999999999999999999999999999996543 4566677777777888 999999999
Q ss_pred h----cC--CChhHHHHHHHHHHHcCCH----HHH----HHHHHHHHhh----CCChhH--HHHHHHHH---------Hc
Q 005990 110 I----QE--NNPATMLLKSQILYRSGEM----DAC----VEFYQKLQKS----KIDSLE--INFVAGLI---------SA 160 (666)
Q Consensus 110 ~----~~--~~~~~~~~la~~~~~~g~~----~~A----~~~~~~~l~~----~p~~~~--~~l~~~~~---------~~ 160 (666)
+ .+ .+..+|........+.++. +++ ..+|+.++.. +++... ..+..... ..
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 8 32 4667777777766666554 333 4788888763 343333 12221111 23
Q ss_pred CChhHHHHHHHHhhhcCCChHHHHHHHHHHHH--------------HhcCHHHHHHHHHHHHHhhhhhccCC--------
Q 005990 161 GRASEVQKTLDSLRVKATSSFELAYNTACSLA--------------EMNKYTEAEQLLLTARRIGQETLTDD-------- 218 (666)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~--------------~~g~~~~A~~~l~~a~~~~~~~~~~~-------- 218 (666)
++.+.+..+|++++.......+-++..-..+. ...+|..|...+......... +...
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~-l~r~~p~~~~~~ 286 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKG-LKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCCCCCSSSTTC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHh-Hhhccccccccc
Confidence 45677889999999764444433322111111 112344444444333222211 0000
Q ss_pred ---CCCh-hhHhhhhhhHHHHHHHHHHHcCC---------hHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhH
Q 005990 219 ---NFAE-DDIEIELAPIAVQLAYVQQLLGN---------TQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVND 285 (666)
Q Consensus 219 ---~~~~-~~~~~~~~~~~~~la~~~~~~g~---------~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (666)
..++ ..........|.. ++.+...+ ......+|++++...|....
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~--yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~-------------------- 344 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLE--WIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPE-------------------- 344 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHH--HHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHH--------------------
T ss_pred hhccCCCCchhHHHHHHHHHH--HHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHH--------------------
Confidence 0000 0000011122222 22222221 12234455555555554332
Q ss_pred HHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHH-HHHHhccccCCCCchHHHHHHHHHHhh
Q 005990 286 SLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQAR-ELVAALPDMFPDSVMPLLLQAAVLVRE 364 (666)
Q Consensus 286 a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~-~~~~~~~~~~p~~~~~~~~~a~~~~~~ 364 (666)
+++..+..+...|+.++|+ .+|+.++...|.+..+++..+.+....
T Consensus 345 ---------------------------------lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~ 391 (679)
T 4e6h_A 345 ---------------------------------IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELN 391 (679)
T ss_dssp ---------------------------------HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred ---------------------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 3344466677788888997 999999999999988899999999999
Q ss_pred CChhHHHHHHHHHHhhC-----------CC----------hhHHHHHHHHHHHHHcCChhHHHHHHhcCcCC-CC-ChhH
Q 005990 365 NKAGKAEELLGQFAEKL-----------PD----------KSKIILLARAQVAAAANHPFIAAESLAKIPDI-QH-MPAT 421 (666)
Q Consensus 365 g~~~~A~~~l~~~~~~~-----------p~----------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-~~-~~~~ 421 (666)
|++++|..+|++++... |. ....+|...+.+..+.|+.+.|..+|.+++.. .+ ...+
T Consensus 392 ~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~l 471 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDI 471 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHH
Confidence 99999999999998752 42 12236888888888999999999999999876 33 4566
Q ss_pred HHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC---hHHHH
Q 005990 422 VATLVALKERAG-DIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS---IEALV 497 (666)
Q Consensus 422 ~~~l~~~~~~~g-~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~l~ 497 (666)
+...+.+....+ +++.|..+|+.+++.+++.. .+|...+.+....|+.+.|..+|++++...|+ ...+-
T Consensus 472 yi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~-------~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw 544 (679)
T 4e6h_A 472 YLENAYIEYHISKDTKTACKVLELGLKYFATDG-------EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIF 544 (679)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 666666766665 48999999999999985443 26778888899999999999999999999884 33333
Q ss_pred HHHHhh--ccCChhhHHHHHhc
Q 005990 498 GLVTTS--AHVDVDKAESYEKR 517 (666)
Q Consensus 498 ~l~~~~--~~~d~~~a~~~~~~ 517 (666)
.....+ .+++.+.+..+.++
T Consensus 545 ~~~~~fE~~~G~~~~~~~v~~R 566 (679)
T 4e6h_A 545 QKVIFFESKVGSLNSVRTLEKR 566 (679)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 333333 56778777776554
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.69 E-value=1.3e-15 Score=167.09 Aligned_cols=205 Identities=14% Similarity=0.073 Sum_probs=173.1
Q ss_pred hcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHH--------HhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCCh
Q 005990 175 VKATSSFELAYNTACSLAEMNKYTEAEQLLLTAR--------RIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNT 246 (666)
Q Consensus 175 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 246 (666)
..+|+++.+++..| +..|++++|+..|++++ ...+. ...+++.+|.++..+|++
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~---------------~~~~~~~~a~~~~~~g~~ 449 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSE---------------SVELPLMEVRALLDLGDV 449 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTT---------------CSHHHHHHHHHHHHHTCH
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhccccccccccc---------------chhHHHHHHHHHHhcCCH
Confidence 45678888887777 88999999999999999 55532 236999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHH
Q 005990 247 QEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLL 326 (666)
Q Consensus 247 ~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~ 326 (666)
++|+..|+++++.+|.+.. .+++++.+
T Consensus 450 ~~A~~~~~~al~~~p~~~~-----------------------------------------------------a~~~lg~~ 476 (681)
T 2pzi_A 450 AKATRKLDDLAERVGWRWR-----------------------------------------------------LVWYRAVA 476 (681)
T ss_dssp HHHHHHHHHHHHHHCCCHH-----------------------------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHhccCcchHH-----------------------------------------------------HHHHHHHH
Confidence 9999999999999997741 22455889
Q ss_pred HHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHH
Q 005990 327 LLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAA 406 (666)
Q Consensus 327 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~ 406 (666)
+...|++++|+..|++++..+|++..+++.+|.++...|++++ +..|+++++.+|++.. +++.++.++...|++++|+
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~-a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVIS-AAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHH-HHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999999999999999 9999999999999766 8999999999999999999
Q ss_pred HHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHH-HHHHHHHHHHHHHh
Q 005990 407 ESLAKIPDIQH-MPATVATLVALKERAGDIDGA-AAVLDSAIKWWLNA 452 (666)
Q Consensus 407 ~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A-~~~l~~a~~~~~~~ 452 (666)
..|+++++++| ++..+..++.++...++.+++ ...+++|+......
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 99999999999 778889999999887775555 56666776665443
No 90
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.67 E-value=2.4e-14 Score=138.53 Aligned_cols=228 Identities=9% Similarity=0.034 Sum_probs=194.3
Q ss_pred HHHHHHHHHcCCh-hHHHHHHHHhhhcCCChHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhhhhhccCCCCChhhHhh
Q 005990 151 INFVAGLISAGRA-SEVQKTLDSLRVKATSSFELAYNTACSLAEMN--KYTEAEQLLLTARRIGQETLTDDNFAEDDIEI 227 (666)
Q Consensus 151 ~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 227 (666)
..........|.+ ++|+.++..++..+|+++.+|+..+.++...| ++++++.++..++..+|++.
T Consensus 36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y------------ 103 (306)
T 3dra_A 36 MGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY------------ 103 (306)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC------------
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH------------
Confidence 3334444455555 58999999999999999999999999999999 99999999999999996543
Q ss_pred hhhhHHHHHHHHH----HHc---CChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhh
Q 005990 228 ELAPIAVQLAYVQ----QLL---GNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQN 300 (666)
Q Consensus 228 ~~~~~~~~la~~~----~~~---g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~ 300 (666)
.+|+..+.++ ... +++++++.++++++..+|.+...+
T Consensus 104 ---~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW--------------------------------- 147 (306)
T 3dra_A 104 ---QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVW--------------------------------- 147 (306)
T ss_dssp ---HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHH---------------------------------
T ss_pred ---HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHH---------------------------------
Confidence 6999999999 667 799999999999999999775322
Q ss_pred hhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChH--HHHHHHHhccccCCCCchHHHHHHHHHHhhCC------hhHHHH
Q 005990 301 FQLARVLDLRLSPKQREAIYANRVLLLLHANKMD--QARELVAALPDMFPDSVMPLLLQAAVLVRENK------AGKAEE 372 (666)
Q Consensus 301 ~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~------~~~A~~ 372 (666)
.++..++...|.++ ++++++++++..+|.+..++..++.++...+. +++++.
T Consensus 148 --------------------~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~ 207 (306)
T 3dra_A 148 --------------------SYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELN 207 (306)
T ss_dssp --------------------HHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHH
T ss_pred --------------------HHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHH
Confidence 22355556667777 99999999999999999999999999988887 999999
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHHHHcCChhH-HHHHHhcCcCCC---C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005990 373 LLGQFAEKLPDKSKIILLARAQVAAAANHPFI-AAESLAKIPDIQ---H-MPATVATLVALKERAGDIDGAAAVLDSAIK 447 (666)
Q Consensus 373 ~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~-A~~~l~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~ 447 (666)
++.+++..+|.+.. ++..+..++...|+... ...+++++++.. + ++..+..++.+|...|+.++|+++|+.+.+
T Consensus 208 ~~~~aI~~~p~n~S-aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 208 YVKDKIVKCPQNPS-TWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHCSSCHH-HHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcc-HHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999999876 88888889988888554 667888888765 5 778899999999999999999999999876
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.67 E-value=1.1e-15 Score=148.98 Aligned_cols=208 Identities=13% Similarity=0.053 Sum_probs=155.5
Q ss_pred hhccHHHHHHHHHHHHhc-------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHH
Q 005990 32 ERSEFEQAVKVADQVLST-------N-PSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDE 103 (666)
Q Consensus 32 ~~~~~~~A~~~~~~~l~~-------~-p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 103 (666)
..|++++|+.+++++++. + |....++..+|.++...|++++|+..|+++.....
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------------ 74 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIRE------------------ 74 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH------------------
Confidence 445556666666665552 3 55688999999999999999999999999833210
Q ss_pred HHHHH-HhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CC---hhH--HHHHHHHHHcCChhHHHHHHHH
Q 005990 104 ALESL-KIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSK-----ID---SLE--INFVAGLISAGRASEVQKTLDS 172 (666)
Q Consensus 104 A~~~l-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~---~~~--~~l~~~~~~~g~~~~A~~~~~~ 172 (666)
..+ ...+....++..+|.++...|++++|+.+|++++... ++ ... .+++.++...|++++|+..|++
T Consensus 75 --~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 152 (283)
T 3edt_B 75 --KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRR 152 (283)
T ss_dssp --HHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred --HHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 000 0012245678889999999999999999999988752 32 222 8889999999999999999999
Q ss_pred hhhc--------CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCC-----------------------
Q 005990 173 LRVK--------ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFA----------------------- 221 (666)
Q Consensus 173 ~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~----------------------- 221 (666)
++.. .|....+++++|.++...|++++|+.+|++++.+.+.........
T Consensus 153 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (283)
T 3edt_B 153 ALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA 232 (283)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH
Confidence 9887 677788999999999999999999999999999864421100000
Q ss_pred -----------hhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005990 222 -----------EDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 222 -----------~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~ 259 (666)
.....+....++..+|.+|..+|++++|+.+|+++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 233 PYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ----------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 00001344578999999999999999999999999864
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.67 E-value=6.3e-15 Score=143.45 Aligned_cols=236 Identities=17% Similarity=0.092 Sum_probs=169.8
Q ss_pred cCChhHHHHHHHHhhh--------cCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhh
Q 005990 160 AGRASEVQKTLDSLRV--------KATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAP 231 (666)
Q Consensus 160 ~g~~~~A~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 231 (666)
.|++++|+..|++++. .+|....+++.+|.++...|++++|+.+|++++.+.......+ .+....
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~ 86 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAA 86 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHH
Confidence 4556666666665554 2366788999999999999999999999999999874432110 133457
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCC
Q 005990 232 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL 311 (666)
Q Consensus 232 ~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~ 311 (666)
++..+|.++..+|++++|+.+|++++...... ...
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------------------------------------~~~ 121 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKV---------------------------------------------LGK 121 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH---------------------------------------------HCT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH---------------------------------------------cCC
Confidence 99999999999999999999999998652100 000
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHhcccc--------CCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhC--
Q 005990 312 SPKQREAIYANRVLLLLHANKMDQARELVAALPDM--------FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL-- 381 (666)
Q Consensus 312 ~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~-- 381 (666)
.......++.+++.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.+|++++...
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 00112234566799999999999999999999876 45556788899999999999999999999999862
Q ss_pred -------CChhHHHHHHHHHHHHHcCC------hhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005990 382 -------PDKSKIILLARAQVAAAANH------PFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIK 447 (666)
Q Consensus 382 -------p~~~~~~~~~la~~~~~~g~------~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~ 447 (666)
+.... ++..++.++...+. +.++...++.+....+ .+.++..++.+|...|++++|..+|+++++
T Consensus 202 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKP-IWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCC-HHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33222 55556655554443 4445555555554445 566789999999999999999999999875
Q ss_pred H
Q 005990 448 W 448 (666)
Q Consensus 448 ~ 448 (666)
.
T Consensus 281 ~ 281 (283)
T 3edt_B 281 N 281 (283)
T ss_dssp T
T ss_pred h
Confidence 4
No 93
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.66 E-value=2.5e-15 Score=136.04 Aligned_cols=167 Identities=18% Similarity=0.131 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHH
Q 005990 318 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 397 (666)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~ 397 (666)
.++..++.++...|++++|+..+++++..+|++..++..+|.++...|++++|+.++++++...|.+.. ++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK-VATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHH
Confidence 345677899999999999999999999999999999999999999999999999999999999998655 8899999999
Q ss_pred HcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCCh
Q 005990 398 AANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGRE 476 (666)
Q Consensus 398 ~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 476 (666)
..|++++|+.++++++...| ++.++..++.++...|++++|..+|++++...+.. ..++..+|.++...|++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE-------GKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc-------hHHHHHHHHHHHHcCCH
Confidence 99999999999999999888 88889999999999999999999999999875332 24778899999999999
Q ss_pred hhHHHHHHHHHHhcCC
Q 005990 477 EDASHLFEELVKTHGS 492 (666)
Q Consensus 477 ~~A~~~~~~~l~~~p~ 492 (666)
++|..+|++++..+|+
T Consensus 161 ~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 161 EEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999999887
No 94
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.65 E-value=1.3e-15 Score=136.98 Aligned_cols=166 Identities=13% Similarity=0.085 Sum_probs=133.8
Q ss_pred CCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHH
Q 005990 17 PPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLY 96 (666)
Q Consensus 17 p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~ 96 (666)
|..+..++..+..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++....|
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p----------- 71 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ----------- 71 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-----------
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-----------
Confidence 344567899999999999999999999999999999999999999999999999999999999865533
Q ss_pred HhCCHHHHHHHHHhcCCChhHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHh
Q 005990 97 RQNRLDEALESLKIQENNPATMLLKSQILY-RSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSL 173 (666)
Q Consensus 97 ~~g~~~~A~~~l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 173 (666)
++..+..++.+.+ ..+...+|+..|++++..+|++.. .+++.++...|++++|+..|+++
T Consensus 72 -----------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 72 -----------------DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNI 134 (176)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------------ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2222222222211 222334578889999999998877 88899999999999999999999
Q ss_pred hhcCCCh--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 005990 174 RVKATSS--FELAYNTACSLAEMNKYTEAEQLLLTARRI 210 (666)
Q Consensus 174 ~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 210 (666)
+..+|+. ..+++++|.++...|++++|+..|++++..
T Consensus 135 l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 135 LKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 9888864 568999999999999999999999988753
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.64 E-value=4.9e-15 Score=139.04 Aligned_cols=203 Identities=11% Similarity=0.107 Sum_probs=126.9
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChh---H--HHHHHHHHHcCChhHHHHHHHHhhhcCCChH---HHHH
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSL---E--INFVAGLISAGRASEVQKTLDSLRVKATSSF---ELAY 185 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~ 185 (666)
++..++.+|..++..|++++|+..|++++...|++. . ..+|.++...|++++|+..|++++..+|++. .+++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 356778888888888888888888888888777653 2 7778888888888888888888888777654 3677
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHh
Q 005990 186 NTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADES 265 (666)
Q Consensus 186 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~ 265 (666)
.+|.++...|.. .+ ..+..++.++..+|++++|+..|++++...|++..
T Consensus 83 ~~g~~~~~~~~~-----~~--------------------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 131 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL--------------------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY 131 (225)
T ss_dssp HHHHHHHHHHC---------------------------------------------CCHHHHHHHHHHHHHHTTCTTCTT
T ss_pred HHHHHHHhhhhh-----hh--------------------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh
Confidence 888877765531 00 13345566667789999999999999999998753
Q ss_pred HHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccc
Q 005990 266 SFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPD 345 (666)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 345 (666)
.. .+...+..+... .....+.++.+++..|++++|+..+++++.
T Consensus 132 a~-----------------~a~~~l~~~~~~-------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 175 (225)
T 2yhc_A 132 TT-----------------DATKRLVFLKDR-------------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLR 175 (225)
T ss_dssp HH-----------------HHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HH-----------------HHHHHHHHHHHH-------------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 22 222222111000 000113345566666666666666666666
Q ss_pred cCCCCc---hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCC
Q 005990 346 MFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPD 383 (666)
Q Consensus 346 ~~p~~~---~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~ 383 (666)
.+|+++ .+++.++.++...|++++|+..++.+....|+
T Consensus 176 ~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 176 DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 666654 44566666666666666666666666555554
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.64 E-value=9.4e-16 Score=133.48 Aligned_cols=143 Identities=11% Similarity=0.007 Sum_probs=124.2
Q ss_pred HHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHH
Q 005990 27 LNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALE 106 (666)
Q Consensus 27 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 106 (666)
+..+...|++++|+..+++++..+|+++.+++.+|.+|+..|+|++|+..|+++...
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~----------------------- 60 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV----------------------- 60 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------
Confidence 455667888888888888888888888888888888888889988888888887333
Q ss_pred HHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHH-HHHhhhcCCChHHH
Q 005990 107 SLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKT-LDSLRVKATSSFEL 183 (666)
Q Consensus 107 ~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~ 183 (666)
.|++..+++.+|.++...|++++|+..|+++++.+|++.. .+++.++...|++++|... ++++++.+|+++.+
T Consensus 61 ----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 61 ----QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred ----CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 6778999999999999999999999999999999999888 8999999999999887765 58999999999999
Q ss_pred HHHHHHHHHHhcC
Q 005990 184 AYNTACSLAEMNK 196 (666)
Q Consensus 184 ~~~la~~~~~~g~ 196 (666)
+..++.++...|+
T Consensus 137 ~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 137 YKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCc
Confidence 9999999888875
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.64 E-value=6.7e-16 Score=134.42 Aligned_cols=132 Identities=7% Similarity=-0.076 Sum_probs=108.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHH
Q 005990 121 KSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYT 198 (666)
Q Consensus 121 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 198 (666)
||.++...|++++|+..|++++...|+... +++|.+|...|++++|+..|++++..+|+++++++++|.+|...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 677777888899999999988877776665 888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHH-HHHHHhhCCCCHhHH
Q 005990 199 EAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGA-YTDIIKRNLADESSF 267 (666)
Q Consensus 199 ~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~-~~~~l~~~~~~~~~~ 267 (666)
+|+..|+++++++|.. ..+++.+|.+|..+|++++|... ++++++++|.++.++
T Consensus 83 ~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQ---------------KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp HHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHH
Confidence 9999999999988542 25888999999999998877665 588999999887554
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.63 E-value=8.1e-15 Score=142.96 Aligned_cols=167 Identities=11% Similarity=0.024 Sum_probs=137.2
Q ss_pred CCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHH
Q 005990 17 PPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLY 96 (666)
Q Consensus 17 p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~ 96 (666)
|.+...++..+..+...|++++|+..|++++..+|++..+++.+|.++...|++++|+..|+++....+
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p----------- 182 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ----------- 182 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-----------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-----------
Confidence 566778888888888888888888888888888888888888888888888888888888888755433
Q ss_pred HhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhh
Q 005990 97 RQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLR 174 (666)
Q Consensus 97 ~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 174 (666)
+........+..+...++.++|+..|++++..+|++.+ .+++.++...|++++|+..|.+++
T Consensus 183 ----------------~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l 246 (287)
T 3qou_A 183 ----------------DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHL 246 (287)
T ss_dssp ----------------SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22333445555567777888888889988888888877 888888888999999999999998
Q ss_pred hcCCCh--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 005990 175 VKATSS--FELAYNTACSLAEMNKYTEAEQLLLTARRI 210 (666)
Q Consensus 175 ~~~~~~--~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 210 (666)
..+|++ ..++.+++.++...|+.++|...|++++..
T Consensus 247 ~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 247 RXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 888887 788999999999999999999999888764
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.61 E-value=2.4e-14 Score=139.63 Aligned_cols=169 Identities=15% Similarity=0.166 Sum_probs=146.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcC
Q 005990 50 NPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSG 129 (666)
Q Consensus 50 ~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g 129 (666)
.|++.++++.+|..+...|++++|+..|+++. ...|++..+++.+|.++...|
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al---------------------------~~~P~~~~a~~~la~~~~~~g 165 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAW---------------------------QLSNQNGEIGLLLAETLIALN 165 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------------HHTTSCHHHHHHHHHHHHHTT
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHH---------------------------HhCCcchhHHHHHHHHHHHCC
Confidence 36677777777777777777777777777762 336788999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 005990 130 EMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTA 207 (666)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 207 (666)
++++|+..|++++..+|+... ...+..+...++.++|+..|++++..+|++.++++++|.++...|++++|+..|.++
T Consensus 166 ~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~ 245 (287)
T 3qou_A 166 RSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGH 245 (287)
T ss_dssp CHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 999999999999999996655 666666778889999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005990 208 RRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~ 258 (666)
+...|.. . -..++..++.++...|+.++|...|++++.
T Consensus 246 l~~~p~~--------~-----~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 246 LRXDLTA--------A-----DGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHCTTG--------G-----GGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred Hhccccc--------c-----cchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999652 1 125899999999999999999999999874
No 100
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.61 E-value=1.2e-14 Score=137.04 Aligned_cols=192 Identities=14% Similarity=0.116 Sum_probs=165.9
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHhhhccch------
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCK-------VVALIKADNIDDALSTIQSSQKFTF------ 85 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~-------~~~~~~~g~~~~A~~~~~~~~~~~~------ 85 (666)
.+..+|..+.-+ ..+++..|+..|.+++..+|+..++|..+ +.++...+++.+++..+.+...+.+
T Consensus 6 ~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~ 84 (282)
T 4f3v_A 6 RLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNAR 84 (282)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCE
T ss_pred HHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Confidence 356788888886 68999999999999999999999999999 8999999999999999988855322
Q ss_pred ------------------hhhHHHHHHHHHhCCHHHHHHHHHhc----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005990 86 ------------------DFNYLKAYCLYRQNRLDEALESLKIQ----ENNPATMLLKSQILYRSGEMDACVEFYQKLQK 143 (666)
Q Consensus 86 ------------------~~~~~~a~~~~~~g~~~~A~~~l~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 143 (666)
++.+..+.+|...|+|++|.++|... |.+. ..+.+|.++++.++|++|+..|+.++.
T Consensus 85 ~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~ 163 (282)
T 4f3v_A 85 IAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGK 163 (282)
T ss_dssp EECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred hccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence 34456889999999999999999873 3355 899999999999999999999997765
Q ss_pred hCCCh-----hHHHHHHHHHHcCChhHHHHHHHHhhhcC--CC-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 144 SKIDS-----LEINFVAGLISAGRASEVQKTLDSLRVKA--TS-SFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 144 ~~p~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
.. +. ..+++|.++...|++++|+..|++++... |. ..++++++|.++..+|+.++|...|++++...|.
T Consensus 164 ~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 164 WP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp CS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred cC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 42 22 12999999999999999999999997544 55 7789999999999999999999999999999853
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.61 E-value=9.1e-15 Score=144.32 Aligned_cols=201 Identities=12% Similarity=0.053 Sum_probs=158.2
Q ss_pred hhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHH
Q 005990 31 IERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIK-ADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLK 109 (666)
Q Consensus 31 ~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ 109 (666)
+..|++++|..+++++.+..+.. ++. .++|++|+..|.++ +.+|...|++++|+..+.
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHH
Confidence 46789999999999988876642 112 47788888877765 456677788877777776
Q ss_pred hcC-------C---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--hhH------HHHHHHHHHcCChhHHHHHHH
Q 005990 110 IQE-------N---NPATMLLKSQILYRSGEMDACVEFYQKLQKSKID--SLE------INFVAGLISAGRASEVQKTLD 171 (666)
Q Consensus 110 ~~~-------~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~------~~l~~~~~~~g~~~~A~~~~~ 171 (666)
+.- + ...++..+|.+|...|++++|+.+|++++...+. +.. .+++.+|.. |++++|+..|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 521 1 2457889999999999999999999999876432 111 788999988 99999999999
Q ss_pred HhhhcCCCh------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCC
Q 005990 172 SLRVKATSS------FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGN 245 (666)
Q Consensus 172 ~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 245 (666)
+++...+.. ..++.++|.+|..+|+|++|+.+|++++.+.+... . ......+++.+|.++..+|+
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------~-~~~~~~~~~~~g~~~~~~g~ 210 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME--------N-YPTCYKKCIAQVLVQLHRAD 210 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------C-HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--------C-hhHHHHHHHHHHHHHHHcCC
Confidence 998866532 57899999999999999999999999999986421 0 12234588899999999999
Q ss_pred hHHHHHHHHHHHhhCCCC
Q 005990 246 TQEAFGAYTDIIKRNLAD 263 (666)
Q Consensus 246 ~~eA~~~~~~~l~~~~~~ 263 (666)
+++|+..|++++ .+|..
T Consensus 211 ~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 211 YVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHHh-CCCCC
Confidence 999999999999 88854
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.60 E-value=7.8e-15 Score=131.77 Aligned_cols=156 Identities=16% Similarity=0.171 Sum_probs=122.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHH-HHHcC
Q 005990 89 YLKAYCLYRQNRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAG-LISAG 161 (666)
Q Consensus 89 ~~~a~~~~~~g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~-~~~~g 161 (666)
+..|..+...|++++|+..+++ .|++..+++.+|.++...|++++|+..|++++...| +.. ..++.+ +...+
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhc
Confidence 3444444444444444444433 577899999999999999999999999999999888 555 222322 22333
Q ss_pred ChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHH
Q 005990 162 RASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQ 241 (666)
Q Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 241 (666)
...+|+..|++++..+|++..+++++|.++...|++++|+..|++++...|.. .+ ..++..++.++.
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--------~~-----~~a~~~l~~~~~ 155 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA--------QD-----GEVKKTFMDILS 155 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT--------TT-----THHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc--------Ch-----HHHHHHHHHHHH
Confidence 44568999999999999999999999999999999999999999999998642 11 148899999999
Q ss_pred HcCChHHHHHHHHHHHh
Q 005990 242 LLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 242 ~~g~~~eA~~~~~~~l~ 258 (666)
.+|++++|+..|++++.
T Consensus 156 ~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 156 ALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHCSSCHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHH
Confidence 99999999999999874
No 103
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.57 E-value=1e-12 Score=127.64 Aligned_cols=234 Identities=14% Similarity=0.137 Sum_probs=179.5
Q ss_pred HHHHHHHHhhhccHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHhhhccchhhhHHH
Q 005990 23 LFTSLNRHIERSEFE-QAVKVADQVLSTNPSDEDAMRCKVVALIKADN----------IDDALSTIQSSQKFTFDFNYLK 91 (666)
Q Consensus 23 l~~~~~~~~~~~~~~-~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~ 91 (666)
+...+......|+++ +|+.+++.+|..+|.+..+|+.++.++..++. +++++.+++.+
T Consensus 32 ~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~----------- 100 (331)
T 3dss_A 32 ATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESC----------- 100 (331)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHH-----------
Confidence 344444556677776 89999999999999999999999999988765 33333333333
Q ss_pred HHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCC-hhHH
Q 005990 92 AYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGE--MDACVEFYQKLQKSKIDSLE--INFVAGLISAGR-ASEV 166 (666)
Q Consensus 92 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~-~~~A 166 (666)
+...|.+..+|+..+.++...|+ +++++.++.+++..+|.+.. .+.+.++...|. ++++
T Consensus 101 ----------------L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~ee 164 (331)
T 3dss_A 101 ----------------LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE 164 (331)
T ss_dssp ----------------HHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred ----------------HHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHH
Confidence 34478899999999999999994 89999999999999999888 677777778888 5899
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhH
Q 005990 167 QKTLDSLRVKATSSFELAYNTACSLAEM--------------NKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPI 232 (666)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (666)
++.+.+++..+|.+..+|.+++.++... +.++++++++.+++..+|. +. .+
T Consensus 165 l~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~----------d~-----Sa 229 (331)
T 3dss_A 165 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN----------DQ-----SA 229 (331)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT----------CH-----HH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC----------CH-----HH
Confidence 9999999999999999999999999887 5689999999999999954 32 58
Q ss_pred HHHHHHHHHHc-----------CChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhh
Q 005990 233 AVQLAYVQQLL-----------GNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDM 298 (666)
Q Consensus 233 ~~~la~~~~~~-----------g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~ 298 (666)
|+.+..++... +.++++++.++++++..|++.............+.......+....+.++++.+|
T Consensus 230 W~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 230 WFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 87776666555 4589999999999999998854332222111122233333455566666665554
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.54 E-value=6.4e-13 Score=131.03 Aligned_cols=237 Identities=13% Similarity=0.091 Sum_probs=143.4
Q ss_pred hcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhh
Q 005990 194 MNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNN 273 (666)
Q Consensus 194 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~ 273 (666)
.|++++|.++++++.+..+..+.. .. .+. .+....+...|.+|...|++++|+..|.+++...+...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~--~~-~~~-~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--------- 70 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMK--WK-PDY-DSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--------- 70 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSS--CS-CCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------
T ss_pred cchHHHHHHHHHHHHHHccccccC--CC-CCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC---------
Confidence 456666666666666654422110 00 011 12223455556778888999999999988875432110
Q ss_pred hhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchH
Q 005990 274 LVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMP 353 (666)
Q Consensus 274 l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 353 (666)
+ .......+.+.+.++...|++++|+.++++++..++.
T Consensus 71 --------~------------------------------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~---- 108 (307)
T 2ifu_A 71 --------S------------------------------LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE---- 108 (307)
T ss_dssp --------C------------------------------HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT----
T ss_pred --------C------------------------------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----
Confidence 0 0011112234455566666666666666555433211
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-------ChhHHHHHH
Q 005990 354 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-------MPATVATLV 426 (666)
Q Consensus 354 ~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-------~~~~~~~l~ 426 (666)
.|+. .....++..++.+|.. |++++|+.+|++++++.+ ...++..++
T Consensus 109 ----------~g~~---------------~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 109 ----------NGTP---------------DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp ----------TTCH---------------HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------cCCH---------------HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 1110 0112244455556655 666666666666655443 134567889
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC------hHHHHHHH
Q 005990 427 ALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS------IEALVGLV 500 (666)
Q Consensus 427 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~l~~l~ 500 (666)
.+|..+|++++|+.+|++++...+.... .......+..+|.+++..|++++|+..|++++ .+|+ ...+..++
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~ 240 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMEN-YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLL 240 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999998876542 22233466788999999999999999999999 8886 12355666
Q ss_pred HhhccCChhhHHH
Q 005990 501 TTSAHVDVDKAES 513 (666)
Q Consensus 501 ~~~~~~d~~~a~~ 513 (666)
.++...|.+....
T Consensus 241 ~~~~~~d~~~~~~ 253 (307)
T 2ifu_A 241 QAYDEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHhcCHHHHHH
Confidence 6776677666655
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.53 E-value=1.2e-14 Score=125.57 Aligned_cols=114 Identities=12% Similarity=0.149 Sum_probs=93.1
Q ss_pred HHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 136 EFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 136 ~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
..|++++..+|++.+ .++|.++...|++++|+..|++++..+|+++.+|+++|.++...|+|++|+..|++++.++|.
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 345666667777766 788888888888888888888888888888888888888888888888888888888888854
Q ss_pred hccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 005990 214 TLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADE 264 (666)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~ 264 (666)
. ..+++.+|.+|..+|++++|+..|++++...|++.
T Consensus 103 ~---------------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 D---------------YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp C---------------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred C---------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 2 25888888888888888888888888888887653
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.53 E-value=1.5e-13 Score=148.40 Aligned_cols=154 Identities=8% Similarity=0.020 Sum_probs=122.9
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcC
Q 005990 33 RSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQE 112 (666)
Q Consensus 33 ~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~ 112 (666)
.|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++... .|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------------------~p 54 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---------------------------HP 54 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---------------------------ST
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------------CC
Confidence 478999999999999999999999999999999999999999999998544 45
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHH
Q 005990 113 NNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACS 190 (666)
Q Consensus 113 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 190 (666)
++..++..+|.++...|++++|+..|+++++.+|++.. .+++.++...|++++|+..|++++..+|++..+++++|.+
T Consensus 55 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 134 (568)
T 2vsy_A 55 GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNW 134 (568)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 67788899999999999999999999999999998877 8899999999999999999999999999999999999999
Q ss_pred HHHh---cCHHHHHHHHHHHHHhhhh
Q 005990 191 LAEM---NKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 191 ~~~~---g~~~~A~~~l~~a~~~~~~ 213 (666)
+... |++++|+..|+++++.++.
T Consensus 135 ~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 135 RRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHhhccccHHHHHHHHHHHHhcCCc
Confidence 9999 9999999999999998864
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.53 E-value=1.1e-13 Score=115.99 Aligned_cols=108 Identities=14% Similarity=0.074 Sum_probs=83.0
Q ss_pred hhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCC
Q 005990 143 KSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNF 220 (666)
Q Consensus 143 ~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 220 (666)
.++|+..+ .++|..++..|++++|+..|++++..+|.+..+++++|.++..+|++++|+..|++++++++..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------ 80 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF------ 80 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh------
Confidence 34555544 6677777777777777777777777788888888888888888888888888888888887432
Q ss_pred ChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHh
Q 005990 221 AEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADES 265 (666)
Q Consensus 221 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~ 265 (666)
..+++.+|.++..+|++++|+..|+++++++|++..
T Consensus 81 ---------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 81 ---------IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp ---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ---------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHH
Confidence 257888888888888888888888888888887764
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.52 E-value=1.1e-13 Score=116.19 Aligned_cols=103 Identities=13% Similarity=0.106 Sum_probs=97.0
Q ss_pred cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHH
Q 005990 111 QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTA 188 (666)
Q Consensus 111 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 188 (666)
.|+....+..+|..+++.|+|++|+..|+++++.+|++.. .++|.++...|++++|+..|++++..+|++..+++++|
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 3455678889999999999999999999999999999888 89999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 189 CSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 189 ~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
.++..+|++++|+..|+++++++|.
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999954
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.52 E-value=5.4e-13 Score=123.54 Aligned_cols=172 Identities=10% Similarity=0.022 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-chhhhHHHHHHHHHhC----CHHHHHHHHHh-
Q 005990 37 EQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKF-TFDFNYLKAYCLYRQN----RLDEALESLKI- 110 (666)
Q Consensus 37 ~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~a~~~~~~g----~~~~A~~~l~~- 110 (666)
.+|+..|+++.+. +++.+++.+|.+|...+++++|+.+|+++... .+...+.++.+|.. + ++++|+.++++
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 3577888888876 78899999999999999999999999998654 45788889999888 7 89999999988
Q ss_pred -cCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC--hhH--HHHHHHHHH----cCChhHHHHHHHHhhhcC
Q 005990 111 -QENNPATMLLKSQILYR----SGEMDACVEFYQKLQKSKID--SLE--INFVAGLIS----AGRASEVQKTLDSLRVKA 177 (666)
Q Consensus 111 -~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~--~~~--~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 177 (666)
.+.++.+++.+|.+|.. .+++++|+.+|++++...+. ... .+|+.+|.. .+++++|+..|+++...
T Consensus 80 ~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~- 158 (212)
T 3rjv_A 80 VEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL- 158 (212)
T ss_dssp HHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-
T ss_pred HHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-
Confidence 45689999999999988 89999999999999988874 233 999999999 88999999999999887
Q ss_pred CChHHHHHHHHHHHHHh-c-----CHHHHHHHHHHHHHhhh
Q 005990 178 TSSFELAYNTACSLAEM-N-----KYTEAEQLLLTARRIGQ 212 (666)
Q Consensus 178 ~~~~~~~~~la~~~~~~-g-----~~~~A~~~l~~a~~~~~ 212 (666)
+.+..+++++|.+|... | ++++|+.+|+++.+...
T Consensus 159 ~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 159 SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 55677999999999864 3 89999999999999873
No 110
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.51 E-value=3.9e-12 Score=123.61 Aligned_cols=244 Identities=15% Similarity=0.066 Sum_probs=177.2
Q ss_pred HcCCHH-HHHHHHHHHHhhCCChhH--HHHHHHHHHcCC----------hhHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 005990 127 RSGEMD-ACVEFYQKLQKSKIDSLE--INFVAGLISAGR----------ASEVQKTLDSLRVKATSSFELAYNTACSLAE 193 (666)
Q Consensus 127 ~~g~~~-~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 193 (666)
..|.+. +|+.++..++..+|++.. ...+.++...+. +++++..++.++..+|.++.+|+..+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 455554 788888888888888877 333444443333 6789999999999999999999999999999
Q ss_pred hcC--HHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCCHhHHHHH
Q 005990 194 MNK--YTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGN-TQEAFGAYTDIIKRNLADESSFAVA 270 (666)
Q Consensus 194 ~g~--~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~eA~~~~~~~l~~~~~~~~~~~~~ 270 (666)
.|+ +++++.++.++++.++.+ ..+|...+.+....|. ++++++++.+++..+|.+...+...
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprN---------------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R 185 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERN---------------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYR 185 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 994 899999999999999543 2699999999999999 5999999999999999987655333
Q ss_pred HhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCC
Q 005990 271 VNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS 350 (666)
Q Consensus 271 ~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 350 (666)
...+..+....... . ... ...+.++++++++.+++..+|++
T Consensus 186 ~~ll~~l~~~~~~~---------------------~-~~~-----------------~~~~~~~eEle~~~~ai~~~P~d 226 (331)
T 3dss_A 186 SCLLPQLHPQPDSG---------------------P-QGR-----------------LPENVLLKELELVQNAFFTDPND 226 (331)
T ss_dssp HHHHHHHSCCC----------------------------C-----------------CCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHhhhccccc---------------------c-ccc-----------------cchHHHHHHHHHHHHHHHhCCCC
Confidence 22221111100000 0 000 00134678999999999999999
Q ss_pred chHHHHHHHHHHhh-----------CChhHHHHHHHHHHhhCCChhHHHHHHHHHHHH---HcCChhHHHHHHhcCcCCC
Q 005990 351 VMPLLLQAAVLVRE-----------NKAGKAEELLGQFAEKLPDKSKIILLARAQVAA---AANHPFIAAESLAKIPDIQ 416 (666)
Q Consensus 351 ~~~~~~~a~~~~~~-----------g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~---~~g~~~~A~~~l~~~~~~~ 416 (666)
..+++++..++... +.+++++..+.++++..|++.. .+..++.+.. ..|..++...+|.++.+++
T Consensus 227 ~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w-~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 227 QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccch-HHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 99997665555554 4578999999999999999743 4444443322 3577788888888888888
Q ss_pred C-ChhHHHHH
Q 005990 417 H-MPATVATL 425 (666)
Q Consensus 417 ~-~~~~~~~l 425 (666)
| ..+.+..+
T Consensus 306 p~r~~~y~d~ 315 (331)
T 3dss_A 306 PMRAAYLDDL 315 (331)
T ss_dssp GGGHHHHHHH
T ss_pred cchhhHHHHH
Confidence 8 55555444
No 111
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.50 E-value=7.1e-12 Score=122.24 Aligned_cols=233 Identities=7% Similarity=-0.022 Sum_probs=179.4
Q ss_pred cCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHH
Q 005990 160 AGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMN-KYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAY 238 (666)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 238 (666)
.+..++|+..+++++..+|+++.+|+..+.++...| .+++++.+++.++..+|++ ..+|...+.
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn---------------y~aW~hR~w 131 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS---------------YQVWHHRLL 131 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC---------------HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc---------------HHHHHHHHH
Confidence 445568999999999999999999999999999999 5999999999999999653 269999999
Q ss_pred HHHHc-C-ChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHH
Q 005990 239 VQQLL-G-NTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQR 316 (666)
Q Consensus 239 ~~~~~-g-~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~ 316 (666)
++... + +++++++++.+++..+|.+...+....
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~--------------------------------------------- 166 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLH--------------------------------------------- 166 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHH---------------------------------------------
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHH---------------------------------------------
Confidence 99988 8 899999999999999998864442221
Q ss_pred HHHHHHHHHHHHHcCC--------hHHHHHHHHhccccCCCCchHHHHHHHHHHhhCC-------hhHHHHHHHHHHhhC
Q 005990 317 EAIYANRVLLLLHANK--------MDQARELVAALPDMFPDSVMPLLLQAAVLVRENK-------AGKAEELLGQFAEKL 381 (666)
Q Consensus 317 ~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~-------~~~A~~~l~~~~~~~ 381 (666)
.++...|. +.++++++++++..+|.+..++..++.++...+. +++++.++.+++..+
T Consensus 167 --------wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~ 238 (349)
T 3q7a_A 167 --------WLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI 238 (349)
T ss_dssp --------HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC
T ss_pred --------HHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC
Confidence 11111122 2488999999999999999999999999988886 789999999999999
Q ss_pred CChhHHHHHHHHHHHHHcCCh--------------------hHHHHHHhcCcCCC------C-ChhHHHHHHHHHHHcCC
Q 005990 382 PDKSKIILLARAQVAAAANHP--------------------FIAAESLAKIPDIQ------H-MPATVATLVALKERAGD 434 (666)
Q Consensus 382 p~~~~~~~~~la~~~~~~g~~--------------------~~A~~~l~~~~~~~------~-~~~~~~~l~~~~~~~g~ 434 (666)
|.+.. ++..+..++...|+. ..-.+....+.... + .+..+..|+.+|...|+
T Consensus 239 P~n~S-aW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~ 317 (349)
T 3q7a_A 239 PHNVS-AWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNR 317 (349)
T ss_dssp TTCHH-HHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTC
T ss_pred CCCHH-HHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCC
Confidence 99876 777777777776654 44555555555443 2 67788999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 005990 435 IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAA 467 (666)
Q Consensus 435 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~ 467 (666)
.++|.++++.+.+.+ ++.....|...+
T Consensus 318 ~~~a~~~~~~l~~~~------dpir~~yw~~~~ 344 (349)
T 3q7a_A 318 VDDAAKVFEKLSSEY------DQMRAGYWEFRR 344 (349)
T ss_dssp HHHHHHHHHHHHHTT------CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh------ChHHHHHHHHHH
Confidence 999999999875432 344444665443
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.48 E-value=6.1e-13 Score=143.55 Aligned_cols=154 Identities=14% Similarity=0.040 Sum_probs=130.8
Q ss_pred CCHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHH
Q 005990 99 NRLDEALESLKI----QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDS 172 (666)
Q Consensus 99 g~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~ 172 (666)
|++++|+..+++ .|.+..++..+|.++...|++++|+..|+++++.+|++.. .+++.++...|++++|+..|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555555544 5678899999999999999999999999999999999877 8999999999999999999999
Q ss_pred hhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHc---CChHHH
Q 005990 173 LRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLL---GNTQEA 249 (666)
Q Consensus 173 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~eA 249 (666)
++..+|++..+++++|.++...|++++|+..|++++++.+.. ..++..+|.++..+ |++++|
T Consensus 83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~g~~~~A 147 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE---------------PYITAQLLNWRRRLCDWRALDVL 147 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhccccHHHH
Confidence 999999999999999999999999999999999999998542 25889999999999 999999
Q ss_pred HHHHHHHHhhCCCCHhHH
Q 005990 250 FGAYTDIIKRNLADESSF 267 (666)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~ 267 (666)
+..|++++..+|.+...+
T Consensus 148 ~~~~~~al~~~p~~~~~~ 165 (568)
T 2vsy_A 148 SAQVRAAVAQGVGAVEPF 165 (568)
T ss_dssp HHHHHHHHHHTCCCSCHH
T ss_pred HHHHHHHHhcCCcccChH
Confidence 999999999999875433
No 113
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.47 E-value=8.2e-15 Score=146.28 Aligned_cols=132 Identities=10% Similarity=0.075 Sum_probs=119.0
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChh---------------H--HHHHHHHHHcCChhHHHHHHHHhh
Q 005990 112 ENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSL---------------E--INFVAGLISAGRASEVQKTLDSLR 174 (666)
Q Consensus 112 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---------------~--~~l~~~~~~~g~~~~A~~~~~~~~ 174 (666)
|.+..++..+|.+++..|++++|+..|++++...|++. . .+++.++...|++++|+..|++++
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567889999999999999999999999999988872 3 899999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHH-HHHH
Q 005990 175 VKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEA-FGAY 253 (666)
Q Consensus 175 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA-~~~~ 253 (666)
..+|++..+++++|.+|..+|++++|+..|++++.+.|.. ..++..++.++..+|++++| ...|
T Consensus 224 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---------------~~a~~~l~~~~~~~~~~~~a~~~~~ 288 (336)
T 1p5q_A 224 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN---------------KAAKTQLAVCQQRIRRQLAREKKLY 288 (336)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999542 25899999999999999999 5677
Q ss_pred HHHHh
Q 005990 254 TDIIK 258 (666)
Q Consensus 254 ~~~l~ 258 (666)
.+++.
T Consensus 289 ~~~~~ 293 (336)
T 1p5q_A 289 ANMFE 293 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.47 E-value=1.1e-12 Score=113.40 Aligned_cols=107 Identities=11% Similarity=0.089 Sum_probs=48.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccch---hhhHHHHHHHHHhCCHHHHHHHHH----hcCCC
Q 005990 42 VADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTF---DFNYLKAYCLYRQNRLDEALESLK----IQENN 114 (666)
Q Consensus 42 ~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~a~~~~~~g~~~~A~~~l~----~~~~~ 114 (666)
.+++++.++|++.++++.+|.++++.|+|++|+..|+++...+| ..++.+|.|+..+|++++|+..|+ ..|++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 34445555555555555555555555555555555555422211 111111111111111111111111 13455
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCh
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDS 148 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 148 (666)
+.+++.+|.+|..+|++++|+..|++++...|+.
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 5556666666666666666666666665555554
No 115
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.47 E-value=2e-12 Score=109.74 Aligned_cols=132 Identities=20% Similarity=0.208 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAE 193 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 193 (666)
.+++.+|.++...|++++|+.+|++++...|++.. ..++.++...|++++|+..|++++...|.+..+++.+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46788999999999999999999999988887766 7788889999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005990 194 MNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA 262 (666)
Q Consensus 194 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~ 262 (666)
.|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++..+|.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999999987431 247889999999999999999999999988774
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.46 E-value=4.4e-13 Score=130.12 Aligned_cols=193 Identities=10% Similarity=0.071 Sum_probs=148.3
Q ss_pred CCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHH
Q 005990 17 PPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLY 96 (666)
Q Consensus 17 p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~ 96 (666)
|.+...++..+..++..|+|++|+..|++++..+|++..+++.+|.+|..+|+|++|+..++++...
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------- 67 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------------- 67 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------------
Confidence 4578899999999999999999999999999999999999999999999999999999999998554
Q ss_pred HhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-----HHHHHHHHHcCChhHHHHHHH
Q 005990 97 RQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-----INFVAGLISAGRASEVQKTLD 171 (666)
Q Consensus 97 ~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~l~~~~~~~g~~~~A~~~~~ 171 (666)
.|++..+++.+|.++..+|++++|+..|++++..+|++.. +........ +.....
T Consensus 68 --------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~------~~~~~~ 127 (281)
T 2c2l_A 68 --------------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK------KKRWNS 127 (281)
T ss_dssp --------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH------HHHHHH
T ss_pred --------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHH------HHHHHH
Confidence 4567789999999999999999999999999998776532 222111111 111112
Q ss_pred HhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHc-CChHHHH
Q 005990 172 SLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLL-GNTQEAF 250 (666)
Q Consensus 172 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~eA~ 250 (666)
......+.+..+...++.++ .|++++|++.|++++++.+. +. .+...++.++... +.+++|.
T Consensus 128 ~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~----------~~-----~~~~~l~~~~~~~~~~~~~a~ 190 (281)
T 2c2l_A 128 IEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHED----------DG-----HIRAQQACIEAKHDKYMADMD 190 (281)
T ss_dssp HHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSC----------HH-----HHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccc----------hh-----hhhhHHHHHHHHHHHHHHHHH
Confidence 22234455555666666654 79999999999999988743 21 3455556666655 7788999
Q ss_pred HHHHHHHhh
Q 005990 251 GAYTDIIKR 259 (666)
Q Consensus 251 ~~~~~~l~~ 259 (666)
.+|.++...
T Consensus 191 ~~f~~a~~~ 199 (281)
T 2c2l_A 191 ELFSQVDEK 199 (281)
T ss_dssp HHHHHSSCT
T ss_pred HHHHhhhcc
Confidence 999988754
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.45 E-value=2e-13 Score=128.71 Aligned_cols=219 Identities=13% Similarity=0.032 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHH-------HHHHHHcCChHHHHHHHH
Q 005990 182 ELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQL-------AYVQQLLGNTQEAFGAYT 254 (666)
Q Consensus 182 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~eA~~~~~ 254 (666)
..+|..|..+ ..+++..|...|.+++.++|. ++.+|+.+ +.++...+++.+++..+.
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~---------------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~ 71 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNYDES---------------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLS 71 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHH
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChh---------------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHH
Confidence 3455666666 689999999999999999944 45799999 899999999999999999
Q ss_pred HHHhhCCCCHhHHHHHHhhhhhccCC-CChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHcCCh
Q 005990 255 DIIKRNLADESSFAVAVNNLVALKGP-KDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKM 333 (666)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~l~~~~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~~~~~~~~ 333 (666)
+.+.+.|..... .+.+.+. .+ -.+...+...+...++.++...|+|
T Consensus 72 ~~l~l~p~~l~a-------~~~~~g~y~~--------------------------~~~~v~~r~dl~LayA~~L~~~g~y 118 (282)
T 4f3v_A 72 GSVQISMSTLNA-------RIAIGGLYGD--------------------------ITYPVTSPLAITMGFAACEAAQGNY 118 (282)
T ss_dssp HTTTCCGGGGCC-------EEECCTTTCC--------------------------CEEECSSHHHHHHHHHHHHHHHTCH
T ss_pred HHhcCChhhhhh-------hhccCCcccc--------------------------cccccCCHhHHHHHHHHHHHHCCCH
Confidence 999888855310 0000000 00 0111123334556668999999999
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhC-CChhHHHHHHHHHHHHHcCChhHHHHHHhcC
Q 005990 334 DQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL-PDKSKIILLARAQVAAAANHPFIAAESLAKI 412 (666)
Q Consensus 334 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~-p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 412 (666)
++|.+.|..+....|++. ..+.++.++.+.++|++|+..|+.+.... |.....+++.++.++...|++++|+..|+++
T Consensus 119 ~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a 197 (282)
T 4f3v_A 119 ADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEA 197 (282)
T ss_dssp HHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999888 89999999999999999999999776542 1112347899999999999999999999999
Q ss_pred cCCC--C--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 005990 413 PDIQ--H--MPATVATLVALKERAGDIDGAAAVLDSAIKWWL 450 (666)
Q Consensus 413 ~~~~--~--~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~ 450 (666)
..-. | .+..++.++.++..+|+.++|...|++++...|
T Consensus 198 ~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 198 NDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred hcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 7543 4 445778999999999999999999999988753
No 118
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.45 E-value=1e-11 Score=118.62 Aligned_cols=246 Identities=13% Similarity=0.091 Sum_probs=174.3
Q ss_pred HHHHHhhhccHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHH
Q 005990 26 SLNRHIERSEFEQAVKVADQVLSTNPSD-EDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEA 104 (666)
Q Consensus 26 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 104 (666)
.+...+-.|+|..++.... +..|.+ ......+..+|+.+|+|.... ...+.......+.-|..+. |
T Consensus 19 ~ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~~~~~~~a~~~la~~~~~~---a 85 (310)
T 3mv2_B 19 NIKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD-------PTSKLGKVLDLYVQFLDTK---N 85 (310)
T ss_dssp HHHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC-------SSSTTHHHHHHHHHHHTTT---C
T ss_pred HHHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC-------CCCHHHHHHHHHHHHhccc---H
Confidence 5677788999999998543 444544 456677889999999987421 1122221222222222333 6
Q ss_pred HHHHHhc----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--ChhH--HHHHHHHHHcCChhHHHHHHHHhhhc
Q 005990 105 LESLKIQ----ENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKI--DSLE--INFVAGLISAGRASEVQKTLDSLRVK 176 (666)
Q Consensus 105 ~~~l~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 176 (666)
+..|++. +.+...+..+|.++...|++++|+.++.+.+..+| ++.+ ..++.++...|+.+.|.+.++++...
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6666652 34566778999999999999999999999988876 5666 77888999999999999999999888
Q ss_pred CCC----hHHHHHHH--HHHHHHhc--CHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHH
Q 005990 177 ATS----SFELAYNT--ACSLAEMN--KYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQE 248 (666)
Q Consensus 177 ~~~----~~~~~~~l--a~~~~~~g--~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~e 248 (666)
+|+ +-.++.++ |.+.+..| ++.+|..+|+++....+.. ......+. ++..+|++++
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~---------------~~~~lLln-~~~~~g~~~e 229 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTW---------------KTQLGLLN-LHLQQRNIAE 229 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH---------------HHHHHHHH-HHHHHTCHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc---------------ccHHHHHH-HHHHcCCHHH
Confidence 883 22344554 44466667 9999999999987766420 01222223 8999999999
Q ss_pred HHHHHHHHHhhC----------CCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHH
Q 005990 249 AFGAYTDIIKRN----------LADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREA 318 (666)
Q Consensus 249 A~~~~~~~l~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~ 318 (666)
|...++.+++.. |.++ .
T Consensus 230 Ae~~L~~l~~~~p~~~~k~~~~p~~~-----------------------------------------------------~ 256 (310)
T 3mv2_B 230 AQGIVELLLSDYYSVEQKENAVLYKP-----------------------------------------------------T 256 (310)
T ss_dssp HHHHHHHHHSHHHHTTTCHHHHSSHH-----------------------------------------------------H
T ss_pred HHHHHHHHHHhcccccccccCCCCCH-----------------------------------------------------H
Confidence 999999887664 3222 1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHH
Q 005990 319 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLL 355 (666)
Q Consensus 319 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 355 (666)
...|.+.+....|+ +|.+++.++...+|+++.+.-
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 22455666667776 788999999999999876543
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.44 E-value=1.9e-11 Score=119.23 Aligned_cols=245 Identities=9% Similarity=0.008 Sum_probs=186.2
Q ss_pred HHHHHHHHHHhhhccH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhhhccch---hhhHHHHHHH
Q 005990 21 EDLFTSLNRHIERSEF-EQAVKVADQVLSTNPSDEDAMRCKVVALIKAD-NIDDALSTIQSSQKFTF---DFNYLKAYCL 95 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~-~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~---~~~~~~a~~~ 95 (666)
..++.........+.+ ++|+.+++++|..+|.+..+|+.++.++..+| .+++++.+++.+...+| .++..++.++
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL 133 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4445555555555544 68999999999999999999999999999999 59999999999976655 5778999999
Q ss_pred HHh-C-CHHHHHHHHHh----cCCChhHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCChhH--HHHHHHHHH
Q 005990 96 YRQ-N-RLDEALESLKI----QENNPATMLLKSQILYRSGEMD--------ACVEFYQKLQKSKIDSLE--INFVAGLIS 159 (666)
Q Consensus 96 ~~~-g-~~~~A~~~l~~----~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~l~~~p~~~~--~~l~~~~~~ 159 (666)
..+ + +++++++++++ .|.+..+|...+.++...|.++ ++++.+.+++..+|.+.. .+.+.++..
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 998 8 89999998887 6779999999999999998888 999999999999999888 777777777
Q ss_pred cCC-------hhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHH------------HHH-HHHHHHHhhhhhccCCC
Q 005990 160 AGR-------ASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTE------------AEQ-LLLTARRIGQETLTDDN 219 (666)
Q Consensus 160 ~g~-------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~------------A~~-~l~~a~~~~~~~~~~~~ 219 (666)
.+. ++++++.+.+++..+|++..+|+++..++...|+-.. .+. .+......+..-....+
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPL 293 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CC
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccc
Confidence 776 6899999999999999999999999988888776400 000 01111222211111000
Q ss_pred CChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHH-hhCCCCHhHH
Q 005990 220 FAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDII-KRNLADESSF 267 (666)
Q Consensus 220 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l-~~~~~~~~~~ 267 (666)
+++.......++..|+.+|...|+.++|+++|+.+. +.+|-....+
T Consensus 294 --~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw 340 (349)
T 3q7a_A 294 --PEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYW 340 (349)
T ss_dssp --CSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred --ccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHH
Confidence 001112233588899999999999999999999987 5677554433
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.44 E-value=4.1e-13 Score=116.27 Aligned_cols=116 Identities=12% Similarity=0.031 Sum_probs=101.0
Q ss_pred HHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhh
Q 005990 135 VEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQ 212 (666)
Q Consensus 135 ~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 212 (666)
-..|++++..+|++.. .+++.++...|++++|+..|++++..+|.+..+|+++|.++...|++++|+..|++++.+.|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3467888888888777 88888999999999999999999999999999999999999999999999999999999985
Q ss_pred hhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHh
Q 005990 213 ETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADES 265 (666)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~ 265 (666)
.. ..+++.+|.+|..+|++++|+..|++++...|.++.
T Consensus 87 ~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 87 XE---------------PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp TC---------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred CC---------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 42 258899999999999999999999999998887653
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.44 E-value=4.1e-12 Score=117.59 Aligned_cols=174 Identities=12% Similarity=0.038 Sum_probs=147.1
Q ss_pred HHHHHHHHhhhcc-chhhhHHHHHHHHHhCCHHHHHHHHHh--cCCChhHHHHHHHHHHHcC----CHHHHHHHHHHHHh
Q 005990 71 DDALSTIQSSQKF-TFDFNYLKAYCLYRQNRLDEALESLKI--QENNPATMLLKSQILYRSG----EMDACVEFYQKLQK 143 (666)
Q Consensus 71 ~~A~~~~~~~~~~-~~~~~~~~a~~~~~~g~~~~A~~~l~~--~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~~l~ 143 (666)
.+|+..|+++... ++...+.++.+|+..+++++|+.+|++ ...++.+++.+|.+|.. + ++++|+.+|++++.
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 3577788887544 568899999999999999999999998 34589999999999988 7 99999999999976
Q ss_pred hCCChhHHHHHHHHHH----cCChhHHHHHHHHhhhcCC--ChHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhhhh
Q 005990 144 SKIDSLEINFVAGLIS----AGRASEVQKTLDSLRVKAT--SSFELAYNTACSLAE----MNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 144 ~~p~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~~~~ 213 (666)
........+++.+|.. .+++++|+..|+++....+ .++.+++++|.+|.. .+++++|+.+|+++.++...
T Consensus 82 ~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 161 (212)
T 3rjv_A 82 AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRT 161 (212)
T ss_dssp TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCT
T ss_pred CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 4322222899999987 8899999999999999887 458999999999999 88999999999999988211
Q ss_pred hccCCCCChhhHhhhhhhHHHHHHHHHHHc-C-----ChHHHHHHHHHHHhhCC
Q 005990 214 TLTDDNFAEDDIEIELAPIAVQLAYVQQLL-G-----NTQEAFGAYTDIIKRNL 261 (666)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~eA~~~~~~~l~~~~ 261 (666)
..+++.||.+|... | ++++|+.+|+++.+...
T Consensus 162 ----------------~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 162 ----------------GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp ----------------THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred ----------------HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 14889999999874 3 89999999999998754
No 122
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.42 E-value=1.8e-11 Score=116.97 Aligned_cols=249 Identities=11% Similarity=0.095 Sum_probs=166.3
Q ss_pred HHHHhCCHHHHHHHHHhc-CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHH
Q 005990 94 CLYRQNRLDEALESLKIQ-EN-NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLD 171 (666)
Q Consensus 94 ~~~~~g~~~~A~~~l~~~-~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~ 171 (666)
-.+-+|+|..++.-+.+. +. .......+.+.|..+|++.... ...|....+.+-..|.. + .|+..|+
T Consensus 22 n~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~~~~~~~a~~~la~~~~-~---~a~~~l~ 90 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD-------PTSKLGKVLDLYVQFLD-T---KNIEELE 90 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC-------SSSTTHHHHHHHHHHHT-T---TCCHHHH
T ss_pred HHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC-------CCCHHHHHHHHHHHHhc-c---cHHHHHH
Confidence 344456666666654442 12 3345566667777777766311 11111111333333333 2 2788888
Q ss_pred HhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHH
Q 005990 172 SLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFG 251 (666)
Q Consensus 172 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~ 251 (666)
+++...+.+...++.+|.++...|++++|+.++.+.+..++. .. ...++..++.++..+|+.+.|.+
T Consensus 91 ~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~--------~~-----~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 91 NLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA--------EG-----TTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp HTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS--------TT-----HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--------cC-----cHHHHHHHHHHHHHCCCHHHHHH
Confidence 888765555667789999999999999999999998776631 01 22588899999999999999999
Q ss_pred HHHHHHhhCCC-----CHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHHHHHHHHHHHHHH
Q 005990 252 AYTDIIKRNLA-----DESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLL 326 (666)
Q Consensus 252 ~~~~~l~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~q~~~~~~~~a~~ 326 (666)
.++++.+.+|+ +.... ....+.+
T Consensus 158 ~l~~~~~~~~d~~~~~d~~l~----------------------------------------------------~Laea~v 185 (310)
T 3mv2_B 158 IFDNYTNAIEDTVSGDNEMIL----------------------------------------------------NLAESYI 185 (310)
T ss_dssp HHHHHHHHSCHHHHHHHHHHH----------------------------------------------------HHHHHHH
T ss_pred HHHHHHhcCccccccchHHHH----------------------------------------------------HHHHHHH
Confidence 99999888872 21100 0111333
Q ss_pred HHHcC--ChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhh----------CCChhHHHHHHHHH
Q 005990 327 LLHAN--KMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK----------LPDKSKIILLARAQ 394 (666)
Q Consensus 327 ~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~----------~p~~~~~~~~~la~ 394 (666)
.+..| ++.+|..+|+++...+|+......++. ++...|++++|...++.+++. +|+++. ++..++.
T Consensus 186 ~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~-~LaN~i~ 263 (310)
T 3mv2_B 186 KFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT-FLANQIT 263 (310)
T ss_dssp HHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH-HHHHHHH
T ss_pred HHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH-HHHHHHH
Confidence 44444 888999999998888886222223333 788899999999999877766 366554 6767777
Q ss_pred HHHHcCChhHHHHHHhcCcCCCC-ChhHH
Q 005990 395 VAAAANHPFIAAESLAKIPDIQH-MPATV 422 (666)
Q Consensus 395 ~~~~~g~~~~A~~~l~~~~~~~~-~~~~~ 422 (666)
+....|+ +|.++++++.+..| +|.+.
T Consensus 264 l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 264 LALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 7777887 88899999998888 66543
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.41 E-value=9.6e-12 Score=121.74 Aligned_cols=159 Identities=13% Similarity=0.121 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhccch---------hhhHHHHHHHHHhCCHHHHHHHHHhc----CC------C
Q 005990 54 EDAMRCKVVALIKADNIDDALSTIQSSQKFTF---------DFNYLKAYCLYRQNRLDEALESLKIQ----EN------N 114 (666)
Q Consensus 54 ~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~a~~~~~~g~~~~A~~~l~~~----~~------~ 114 (666)
...+...+..++..|+|++|+..+.++....+ ...+.++.++...|++++|+..+++. +. .
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34445555556666666666666555432211 12234455555556666666655541 11 1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCChh----H--HHHHHHHHHcCChhHHHHHHHHhhhcCCC------
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQ---KSKIDSL----E--INFVAGLISAGRASEVQKTLDSLRVKATS------ 179 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l---~~~p~~~----~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------ 179 (666)
..+++.+|.+|...|++++|+.+|++++ ...+++. . .++|.+|...|++++|+..|++++...++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4578899999999999999999999998 4455532 1 88999999999999999999998875432
Q ss_pred hHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHhhh
Q 005990 180 SFELAYNTACSLAEMNKYTEA-EQLLLTARRIGQ 212 (666)
Q Consensus 180 ~~~~~~~la~~~~~~g~~~~A-~~~l~~a~~~~~ 212 (666)
...+++++|.+|...|++++| ..+|++++.+..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 377899999999999999999 888999998874
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.41 E-value=5.8e-13 Score=115.30 Aligned_cols=107 Identities=12% Similarity=0.087 Sum_probs=55.4
Q ss_pred CCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHH
Q 005990 16 PPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCL 95 (666)
Q Consensus 16 ~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~ 95 (666)
+|.++..++..+..++..|+|++|+..|++++..+|+++.+|+.+|.++..+|+|++|+..|+++..
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------- 83 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV------------- 83 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------------
Confidence 3444444455555555555555555555555555555555555555555555555555555444421
Q ss_pred HHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChh
Q 005990 96 YRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSL 149 (666)
Q Consensus 96 ~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 149 (666)
..|+++.+++.+|.++...|++++|+..|++++...|++.
T Consensus 84 --------------l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 84 --------------MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp --------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred --------------cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 1345555566666666666666666666666655555443
No 125
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.41 E-value=3.9e-13 Score=134.08 Aligned_cols=168 Identities=10% Similarity=-0.011 Sum_probs=140.5
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhc
Q 005990 32 ERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQ 111 (666)
Q Consensus 32 ~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 111 (666)
..+++++|+..+++++...|.+..+++.+|.+++..|+|++|+..|+++..+.+.... . ..+.+... .
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~-~~~~~~~~---~ 192 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------F-SNEEAQKA---Q 192 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------C-CSHHHHHH---H
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc--------C-ChHHHHHH---H
Confidence 4567888888888888888999999999999999999999999999999665443210 0 00111111 1
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHH
Q 005990 112 ENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTAC 189 (666)
Q Consensus 112 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 189 (666)
+....++..+|.+++.+|++++|+..|++++..+|++.. .+++.+|...|++++|+..|++++..+|++..++++++.
T Consensus 193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 113578999999999999999999999999999999887 999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHH-HHHHHHHHHhh
Q 005990 190 SLAEMNKYTEA-EQLLLTARRIG 211 (666)
Q Consensus 190 ~~~~~g~~~~A-~~~l~~a~~~~ 211 (666)
++...|++++| ...|.+++...
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 55777777654
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.40 E-value=1.6e-11 Score=120.13 Aligned_cols=165 Identities=13% Similarity=0.080 Sum_probs=132.4
Q ss_pred hhhHHHHHHHHHhCCHHHHHHHHHh----cCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCh------h
Q 005990 86 DFNYLKAYCLYRQNRLDEALESLKI----QENN------PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDS------L 149 (666)
Q Consensus 86 ~~~~~~a~~~~~~g~~~~A~~~l~~----~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~ 149 (666)
......+..++..|++++|++.+.. .+.. ...++.+|.++...|++++|+..|++++...+.. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445778899999999999998875 2222 2345678899999999999999999999754332 1
Q ss_pred H--HHHHHHHHHcCChhHHHHHHHHhh---hcCCCh----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCC
Q 005990 150 E--INFVAGLISAGRASEVQKTLDSLR---VKATSS----FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNF 220 (666)
Q Consensus 150 ~--~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~----~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 220 (666)
. .++|.+|...|++++|+..|++++ ...+++ ..+++++|.+|...|+|++|+.+|++++.+....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~------ 229 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI------ 229 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc------
Confidence 1 789999999999999999999998 444442 2689999999999999999999999999998431
Q ss_pred ChhhHhhhhhhHHHHHHHHHHHcCChHHH-HHHHHHHHhh
Q 005990 221 AEDDIEIELAPIAVQLAYVQQLLGNTQEA-FGAYTDIIKR 259 (666)
Q Consensus 221 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA-~~~~~~~l~~ 259 (666)
.+ ...++.+++.+|.+|..+|++++| ..+|++++.+
T Consensus 230 --~~-~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 230 --NS-MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp --TB-CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred --Cc-HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 00 122457899999999999999999 8889998754
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.40 E-value=1.8e-12 Score=125.74 Aligned_cols=101 Identities=12% Similarity=0.055 Sum_probs=73.2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHH
Q 005990 113 NNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACS 190 (666)
Q Consensus 113 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 190 (666)
.+...+..+|.+++..|++++|+..|++++..+|++.. .++|.++...|++++|+..|++++..+|++..+++++|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34566777777777778888887777777777776655 6677777777777777777777777777777777777777
Q ss_pred HHHhcCHHHHHHHHHHHHHhhhh
Q 005990 191 LAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 191 ~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
+...|++++|+..|++++.+.|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc
Confidence 77777777777777777776653
No 128
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.40 E-value=4.4e-12 Score=106.49 Aligned_cols=105 Identities=15% Similarity=0.062 Sum_probs=91.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELA 230 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 230 (666)
.++|.++...|++++|+..|++++..+|++..+++++|.+|+.+|+|++|+..|++++++.+.... + ...++
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~-------~-~~~~a 83 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA-------D-YKLIA 83 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------C-HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch-------h-hHHHH
Confidence 567888888888888888888888889999999999999999999999999999999999976321 1 13456
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 005990 231 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLAD 263 (666)
Q Consensus 231 ~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~ 263 (666)
.++..+|.++..+|++++|+..|++++...|+.
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 789999999999999999999999999988754
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.38 E-value=1.1e-11 Score=113.93 Aligned_cols=156 Identities=15% Similarity=0.060 Sum_probs=120.1
Q ss_pred HHhCCHHHHHH---HHHhcC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---ChhH-----HHHHHHHHHcCCh
Q 005990 96 YRQNRLDEALE---SLKIQE-NNPATMLLKSQILYRSGEMDACVEFYQKLQKSKI---DSLE-----INFVAGLISAGRA 163 (666)
Q Consensus 96 ~~~g~~~~A~~---~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~-----~~l~~~~~~~g~~ 163 (666)
+..|++++|.+ .+...+ ....++..+|.++...|++++|+..|++++.... +... .+++.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45677777777 555544 3567888999999999999999999999887321 2111 7888999999999
Q ss_pred hHHHHHHHHhhhc---CC----ChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHH
Q 005990 164 SEVQKTLDSLRVK---AT----SSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQL 236 (666)
Q Consensus 164 ~~A~~~~~~~~~~---~~----~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 236 (666)
++|+..|++++.. .+ ....+++++|.++...|++++|+.+|++++.+.... .+. .....++..+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~~~l 153 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--------DDQ-VAIACAFRGL 153 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--------TCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--------cch-HHHHHHHHHH
Confidence 9999999988775 33 235678999999999999999999999999987542 111 2234678999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhC
Q 005990 237 AYVQQLLGNTQEAFGAYTDIIKRN 260 (666)
Q Consensus 237 a~~~~~~g~~~eA~~~~~~~l~~~ 260 (666)
|.++...|++++|+..|++++...
T Consensus 154 a~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 154 GDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999998653
No 130
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.8e-10 Score=119.72 Aligned_cols=210 Identities=10% Similarity=0.085 Sum_probs=155.6
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHhhhcc
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDE-----------------DAMRCKVVALIKADNIDDALSTIQSSQKF 83 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-----------------~a~~~~~~~~~~~g~~~~A~~~~~~~~~~ 83 (666)
.+.+..+..+...|+|++|++.|.++++..|... .++..+|.+|...|+|++|++++.++...
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999987643 35777888888888888888888877332
Q ss_pred chhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---h---hH--HHHHH
Q 005990 84 TFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKID---S---LE--INFVA 155 (666)
Q Consensus 84 ~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~---~~--~~l~~ 155 (666)
.+...-. .....+...++.++...|++++|+.+|+.++...+. . .. .+++.
T Consensus 85 ~~~~~~~---------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 143 (434)
T 4b4t_Q 85 MMQFAKS---------------------KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLAT 143 (434)
T ss_dssp HHTSCHH---------------------HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHH
T ss_pred HHHccch---------------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 1111000 001234556677777778888888888877653211 1 11 67788
Q ss_pred HHHHcCChhHHHHHHHHhhhc------CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhh
Q 005990 156 GLISAGRASEVQKTLDSLRVK------ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIEL 229 (666)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 229 (666)
++...|++++|+..++++... .+...+++.+++.+|...|+|++|..+|++++...+.... +. ...
T Consensus 144 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~---~~~ 215 (434)
T 4b4t_Q 144 LHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC-----PT---QTV 215 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-----CH---HHH
T ss_pred HHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC-----ch---HHH
Confidence 888888888888888777542 3446778999999999999999999999999998754211 11 224
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005990 230 APIAVQLAYVQQLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 230 ~~~~~~la~~~~~~g~~~eA~~~~~~~l~~ 259 (666)
+.++..+|.++...|++.+|...|..++..
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 568889999999999999999999988754
No 131
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.38 E-value=1.8e-11 Score=103.65 Aligned_cols=131 Identities=20% Similarity=0.215 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHH
Q 005990 55 DAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDAC 134 (666)
Q Consensus 55 ~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A 134 (666)
.+++.+|.++...|++++|+..++++.. ..|.+..++..+|.++...|++++|
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------------------~~~~~~~~~~~~a~~~~~~~~~~~A 54 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALE---------------------------LDPRSAEAWYNLGNAYYKQGDYDEA 54 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------------------HCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHH---------------------------cCCcchhHHHHHHHHHHHhcCHHHH
Confidence 3556666666666666666666666522 1455678888999999999999999
Q ss_pred HHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhh
Q 005990 135 VEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQ 212 (666)
Q Consensus 135 ~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 212 (666)
+.+|++++...|.+.. ..++.++...|++++|+..|++++...|.+..+++.+|.++...|++++|+.+|++++...+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 55 IEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 9999999998888766 78899999999999999999999999999999999999999999999999999999998875
No 132
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.38 E-value=4e-09 Score=110.34 Aligned_cols=372 Identities=8% Similarity=-0.040 Sum_probs=224.2
Q ss_pred CcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHhhhccchhhhHHHHHHHH
Q 005990 18 PPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADN-IDDALSTIQSSQKFTFDFNYLKAYCLY 96 (666)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~a~~~~ 96 (666)
..+...|..+...+-.++++.+..+|++++...| +.+.|...+....+.+. .+.....|
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~f------------------- 71 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVY------------------- 71 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHH-------------------
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHH-------------------
Confidence 3456666666666666777777777777777666 66666666655555442 11122222
Q ss_pred HhCCHHHHHHHHHhcCCChhHHHHHHHHHH----HcCCHHHHHHHHHHHHhhCCChhH---HHHHHH-------------
Q 005990 97 RQNRLDEALESLKIQENNPATMLLKSQILY----RSGEMDACVEFYQKLQKSKIDSLE---INFVAG------------- 156 (666)
Q Consensus 97 ~~g~~~~A~~~l~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~~p~~~~---~~l~~~------------- 156 (666)
+.|+..+...+.+..+|...+..+. ..|+.+.+..+|++++...+...+ ..+...
T Consensus 72 -----e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 72 -----EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp -----HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred -----HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHH
Confidence 2333333323445566666555543 345667777778877774222222 000000
Q ss_pred HHHcCChhHHHHHHHHhhhcCCC-hHHHHHHHHHHHHHh--c-----CHHHHHHHHHHHHHhhhhhccCCCCChhhHhhh
Q 005990 157 LISAGRASEVQKTLDSLRVKATS-SFELAYNTACSLAEM--N-----KYTEAEQLLLTARRIGQETLTDDNFAEDDIEIE 228 (666)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~--g-----~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 228 (666)
-.....+..|...|+.+....+. +...|......-... | ........|++++..++..
T Consensus 147 ~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~-------------- 212 (493)
T 2uy1_A 147 GDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYA-------------- 212 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC--------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCC--------------
Confidence 00112333445445444432221 334554433332221 1 1345678999999988542
Q ss_pred hhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhhHHh-
Q 005990 229 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL- 307 (666)
Q Consensus 229 ~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l- 307 (666)
..+|+..+..+...|+.++|..+|++++.. |.+..++... ..+ .... .....+.+.... .+..
T Consensus 213 -~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y-~~~---~e~~---~~~~~l~~~~~~-------~~~~~ 276 (493)
T 2uy1_A 213 -EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYY-GLV---MDEE---AVYGDLKRKYSM-------GEAES 276 (493)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHH-HHH---TTCT---HHHHHHHHHTC-------------
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHH-Hhh---cchh---HHHHHHHHHHHh-------hccch
Confidence 258999999999999999999999999999 8876443321 111 1111 111111110000 0000
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCC-CchHHHHHHHHHHhhC-ChhHHHHHHHHHHhhCCChh
Q 005990 308 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD-SVMPLLLQAAVLVREN-KAGKAEELLGQFAEKLPDKS 385 (666)
Q Consensus 308 ~~~~~~~q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g-~~~~A~~~l~~~~~~~p~~~ 385 (666)
...........++...+......+..+.|+.+|..+ . .|. ....+...|.+....+ +.+.|..+|+.+++..|+.+
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~ 354 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST 354 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH
Confidence 000012223345666677777788899999999999 3 343 3355555566666555 69999999999999999865
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 005990 386 KIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWL 450 (666)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~ 450 (666)
. .+...+......|+.+.|..+|+++.. ...+|.....+-...|+.+.+..++++++....
T Consensus 355 ~-~~~~yid~e~~~~~~~~aR~l~er~~k---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 355 L-LKEEFFLFLLRIGDEENARALFKRLEK---TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp H-HHHHHHHHHHHHTCHHHHHHHHHHSCC---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 4 667778888899999999999999832 566788888888888999999999999988665
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.38 E-value=1.4e-11 Score=108.93 Aligned_cols=133 Identities=9% Similarity=-0.001 Sum_probs=116.2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSL 191 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 191 (666)
....+..+|.+++..|++++|+..|++++...|++.. .+++.++...|++++|+..|++++..+|.+..+++++|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3567889999999999999999999999999998877 88999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005990 192 AEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 192 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~ 259 (666)
...|++++|+.+|++++.+.+.. . .....+.++..+...|++++|+..+..+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~----------~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHD----------K---DAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTC----------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCC----------H---HHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999999999998542 1 0123355666688899999999999987643
No 134
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.37 E-value=7.6e-12 Score=116.01 Aligned_cols=147 Identities=9% Similarity=-0.024 Sum_probs=116.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHh
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEM 194 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 194 (666)
..++.+|.+++..|++++|+..|++++ .|.... .++|.++...|++++|+..|++++..+|++..+++++|.++...
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 346778888888999999999888875 332222 88888899999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhhhhhccCCCC-ChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 005990 195 NKYTEAEQLLLTARRIGQETLTDDNF-AEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADE 264 (666)
Q Consensus 195 g~~~~A~~~l~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~ 264 (666)
|++++|+..|++++.+.+......-. ......+....+++.+|.++..+|++++|+..|++++...|.+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 99999999999999987642100000 00001122346899999999999999999999999999998653
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.37 E-value=1.9e-11 Score=103.44 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=100.2
Q ss_pred CCCCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHH
Q 005990 13 PSQPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKA 92 (666)
Q Consensus 13 ~~~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a 92 (666)
.+..|.++.+++..+..+...|++++|+..+++++..+|.+..+++.+|.++...|++++|+..++++...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------- 79 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--------- 79 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---------
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---------
Confidence 34567889999999999999999999999999999999999999999999999999999999999988433
Q ss_pred HHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcC
Q 005990 93 YCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAG 161 (666)
Q Consensus 93 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g 161 (666)
.|.+..+++.+|.++...|++++|+.+|++++..+|.+.. ..++.++...|
T Consensus 80 ------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 80 ------------------EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred ------------------CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 3456677788888888888888888888888777666544 55555554443
No 136
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.37 E-value=2.1e-12 Score=111.02 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=89.9
Q ss_pred HHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 136 EFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 136 ~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
..|++++..+|++.. ..++.++...|++++|+..|++++..+|++..+++++|.++...|++++|+.+|++++.++|.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 356666667776666 777888888888888888888888888888888888888888888888888888888888854
Q ss_pred hccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 005990 214 TLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADE 264 (666)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~ 264 (666)
. ..+++.+|.++..+|++++|+..|++++..+|.++
T Consensus 85 ~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 85 E---------------PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp C---------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred C---------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 2 24788888888888888888888888888877665
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.36 E-value=2.4e-11 Score=118.88 Aligned_cols=161 Identities=15% Similarity=0.116 Sum_probs=122.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHhc----CCCh------hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--hh------HH
Q 005990 90 LKAYCLYRQNRLDEALESLKIQ----ENNP------ATMLLKSQILYRSGEMDACVEFYQKLQKSKID--SL------EI 151 (666)
Q Consensus 90 ~~a~~~~~~g~~~~A~~~l~~~----~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~------~~ 151 (666)
..+..++..|++++|+..+++. +..+ ..+..+|.++...|++++|+..|++++...+. +. -.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3455566667777776666651 1111 23345788888888999999999999874322 11 17
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhh-------cCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhh
Q 005990 152 NFVAGLISAGRASEVQKTLDSLRV-------KATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDD 224 (666)
Q Consensus 152 ~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 224 (666)
++|.+|...|++++|+..|++++. ..+....+++++|.+|...|+|++|+.++++++.+.+... +
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~--------~ 231 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN--------S 231 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------B
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC--------c
Confidence 888999999999999999998884 2234556899999999999999999999999999986421 1
Q ss_pred HhhhhhhHHHHHHHHHHHcCC-hHHHHHHHHHHHhh
Q 005990 225 IEIELAPIAVQLAYVQQLLGN-TQEAFGAYTDIIKR 259 (666)
Q Consensus 225 ~~~~~~~~~~~la~~~~~~g~-~~eA~~~~~~~l~~ 259 (666)
...++.+++.+|.+|..+|+ +++|+..|++++.+
T Consensus 232 -~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 232 -MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp -CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 12345799999999999995 69999999999864
No 138
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.36 E-value=1.5e-11 Score=113.91 Aligned_cols=128 Identities=13% Similarity=0.079 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHH
Q 005990 56 AMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACV 135 (666)
Q Consensus 56 a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 135 (666)
.++.+|.++...|+|++|+..|+++... +..+++.+|.++...|++++|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~------------------------------~~~~~~~lg~~~~~~g~~~~A~ 57 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDP------------------------------HSRICFNIGCMYTILKNMTEAE 57 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSC------------------------------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCC------------------------------ChHHHHHHHHHHHHcCCHHHHH
Confidence 4555666666666666666666665322 3455566666666666666666
Q ss_pred HHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCC----------------ChHHHHHHHHHHHHHhcCH
Q 005990 136 EFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKAT----------------SSFELAYNTACSLAEMNKY 197 (666)
Q Consensus 136 ~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------------~~~~~~~~la~~~~~~g~~ 197 (666)
..|++++..+|++.. .++|.++...|++++|+..|++++...| ....+++++|.++...|++
T Consensus 58 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (213)
T 1hh8_A 58 KAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137 (213)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH
Confidence 666666665555544 5566666666666666666666655444 4559999999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 005990 198 TEAEQLLLTARRIGQE 213 (666)
Q Consensus 198 ~~A~~~l~~a~~~~~~ 213 (666)
++|+..|++++.+.+.
T Consensus 138 ~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 138 KKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHcCcc
Confidence 9999999999999854
No 139
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.5e-11 Score=103.17 Aligned_cols=100 Identities=16% Similarity=0.130 Sum_probs=94.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSL 191 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 191 (666)
....+..+|..++..|++++|+..|++++..+|++.. .+++.++...|++++|+..|++++..+|++..+++++|.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3467889999999999999999999999999999877 99999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhhhh
Q 005990 192 AEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 192 ~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
...|++++|+..|++++.+.|.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~ 104 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAE 104 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999943
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.34 E-value=1.5e-11 Score=103.22 Aligned_cols=110 Identities=9% Similarity=-0.044 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 005990 388 ILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEA 466 (666)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l 466 (666)
++..+|..+...|++++|+..|+++++++| ++.++..+|.+|..+|++++|+..|+++++..|...........++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 566788888888888888888888888888 7788889999999999999999999999999887665445555678899
Q ss_pred HHHHHhCCChhhHHHHHHHHHHhcCChHHHH
Q 005990 467 ASFKLRHGREEDASHLFEELVKTHGSIEALV 497 (666)
Q Consensus 467 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~l~ 497 (666)
|.++...|++++|+..|++++..+|+.+.+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence 9999999999999999999999999865543
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.34 E-value=3.3e-11 Score=101.05 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=90.4
Q ss_pred CCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHH
Q 005990 17 PPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLY 96 (666)
Q Consensus 17 p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~ 96 (666)
|.....++..+..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|+|++|+..|+++...
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------- 67 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------------- 67 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------------
Confidence 3456788999999999999999999999999999999999999999999999999999999988433
Q ss_pred HhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 005990 97 RQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSK 145 (666)
Q Consensus 97 ~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 145 (666)
.|++..+++.+|.++...|++++|+..|++++..+
T Consensus 68 --------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 68 --------------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp --------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------------CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 45677888999999999999999999999998887
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=3.4e-11 Score=127.97 Aligned_cols=183 Identities=14% Similarity=0.146 Sum_probs=158.1
Q ss_pred HHHHHHHhhhccH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHhhhccchhhhHHHH
Q 005990 24 FTSLNRHIERSEF-EQAVKVADQVLSTNPSDEDAMRCKVVALIKADN----------IDDALSTIQSSQKFTFDFNYLKA 92 (666)
Q Consensus 24 ~~~~~~~~~~~~~-~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~a 92 (666)
..........|++ ++|+..+++++..+|++..+|+.++.++..+|+ +++++..++++
T Consensus 32 ~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~------------ 99 (567)
T 1dce_A 32 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESC------------ 99 (567)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHH------------
Confidence 3444444556665 588999999999999999999999999999988 78888887776
Q ss_pred HHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcC-ChhHHH
Q 005990 93 YCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSG--EMDACVEFYQKLQKSKIDSLE--INFVAGLISAG-RASEVQ 167 (666)
Q Consensus 93 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g-~~~~A~ 167 (666)
++..|++..+|+..+.++...| +++++++.+.++++.+|.+.. .+.+.++...| .+++++
T Consensus 100 ---------------l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el 164 (567)
T 1dce_A 100 ---------------LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEEL 164 (567)
T ss_dssp ---------------HHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred ---------------HHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHH
Confidence 3347788899999999999999 779999999999999999888 77777788888 899999
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHH
Q 005990 168 KTLDSLRVKATSSFELAYNTACSLAEM--------------NKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIA 233 (666)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (666)
+.+.+++..+|.+..+|++++.++... +.+++|++++.+|+.++|.. ..+|
T Consensus 165 ~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~---------------~saW 229 (567)
T 1dce_A 165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND---------------QSAW 229 (567)
T ss_dssp HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC---------------SHHH
T ss_pred HHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCC---------------ccHH
Confidence 999999999999999999999998885 67899999999999999542 2599
Q ss_pred HHHHHHHHHcCChHH
Q 005990 234 VQLAYVQQLLGNTQE 248 (666)
Q Consensus 234 ~~la~~~~~~g~~~e 248 (666)
+.++.++...+++++
T Consensus 230 ~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 230 FYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHSCCCCCSC
T ss_pred HHHHHHHhcCCCccc
Confidence 999999999888666
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.33 E-value=8.8e-12 Score=107.15 Aligned_cols=115 Identities=15% Similarity=0.037 Sum_probs=103.5
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC
Q 005990 338 ELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH 417 (666)
Q Consensus 338 ~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 417 (666)
..|.+++...|++...++.+|.++...|++++|+..|++++..+|.+.. +++.++.++...|++++|+..|++++.++|
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR-YFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH-HHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4677888888999899999999999999999999999999999999765 899999999999999999999999999999
Q ss_pred -ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 005990 418 -MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAM 453 (666)
Q Consensus 418 -~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~ 453 (666)
++..+..+|.+|...|++++|+..|++++...|.+.
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 888999999999999999999999999999987543
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.32 E-value=6.2e-12 Score=112.81 Aligned_cols=125 Identities=10% Similarity=0.010 Sum_probs=106.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHH-HHHhcCH--HH
Q 005990 125 LYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACS-LAEMNKY--TE 199 (666)
Q Consensus 125 ~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~--~~ 199 (666)
+...|++++|+..|++++..+|++.. ..++.++...|++++|+..|++++..+|++..+++++|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 35678889999999999998888777 8888999999999999999999999999999999999999 8899998 99
Q ss_pred HHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 005990 200 AEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADE 264 (666)
Q Consensus 200 A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~ 264 (666)
|+.+|++++...+.. ..+++.+|.++...|++++|+..|++++..+|.+.
T Consensus 100 A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 100 TRAMIDKALALDSNE---------------ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 999999999988532 25888999999999999999999999999998775
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.32 E-value=2.9e-11 Score=102.29 Aligned_cols=119 Identities=13% Similarity=0.048 Sum_probs=108.1
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHH
Q 005990 112 ENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTAC 189 (666)
Q Consensus 112 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 189 (666)
+.+...++.+|.+++..|++++|+..|++++...|++.. .+++.++...|++++|+..|++++..+|++..+++++|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 346788999999999999999999999999999998877 889999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCC
Q 005990 190 SLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGN 245 (666)
Q Consensus 190 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 245 (666)
++...|++++|+.+|++++.+.+.. ..++..++.++..+|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSC---------------KEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGG---------------THHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHHhcC
Confidence 9999999999999999999998542 2588889999888774
No 146
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.32 E-value=2.1e-11 Score=103.68 Aligned_cols=99 Identities=15% Similarity=0.084 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------hhH-------HHHHHHHHHcCChhHHHHHHHHhhhc----
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQKSKID-------SLE-------INFVAGLISAGRASEVQKTLDSLRVK---- 176 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~-------~~l~~~~~~~g~~~~A~~~~~~~~~~---- 176 (666)
...+..+|..++..|+|++|+..|++++..+|+ +.. .|++.++...|++++|+..|++++..
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 356788999999999999999999999999888 321 89999999999999999999999999
Q ss_pred ---CCChHHHH----HHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 177 ---ATSSFELA----YNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 177 ---~~~~~~~~----~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
+|++..+| +++|.++..+|++++|+..|++++++.|+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999 99999999999999999999999999965
No 147
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.31 E-value=1.1e-10 Score=114.21 Aligned_cols=169 Identities=8% Similarity=-0.062 Sum_probs=136.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHhccccCCCCch------HHHHHHHHHHhhCChhHHHHHHHHHHhhCCCh-----hHHHH
Q 005990 321 ANRVLLLLHANKMDQARELVAALPDMFPDSVM------PLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-----SKIIL 389 (666)
Q Consensus 321 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~-----~~~~~ 389 (666)
.+.+..++..|++++|...++++....+.... .+..++.++...|++++|+.+|++++...+.. ...++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34467789999999999999999887766543 22346777888899999999999999864331 13368
Q ss_pred HHHHHHHHHcCChhHHHHHHhcCcC-------CCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHH
Q 005990 390 LARAQVAAAANHPFIAAESLAKIPD-------IQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSV 461 (666)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~l~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 461 (666)
..+|.+|...|++++|+.+|+++++ ..+ ...++..+|.+|...|++++|+.+++++++..+.... ......
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~-~~~~~~ 237 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-MALIGQ 237 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-CTTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc-HHHHHH
Confidence 8899999999999999999999983 222 3446789999999999999999999999999866532 334456
Q ss_pred HHHHHHHHHHhCCC-hhhHHHHHHHHHHhc
Q 005990 462 IMQEAASFKLRHGR-EEDASHLFEELVKTH 490 (666)
Q Consensus 462 ~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~ 490 (666)
++..+|.++...|+ +++|+..|++++.+.
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 88899999999995 699999999999764
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.31 E-value=1.3e-11 Score=110.64 Aligned_cols=129 Identities=6% Similarity=0.118 Sum_probs=94.0
Q ss_pred HHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHH
Q 005990 26 SLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEAL 105 (666)
Q Consensus 26 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 105 (666)
.+..+...|++++|+..+++++..+|++..+++.+|.++...|++++|+..|+++...
T Consensus 16 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------------------- 73 (177)
T 2e2e_A 16 PLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---------------------- 73 (177)
T ss_dssp TTCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------
T ss_pred hhhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------------
Confidence 3344577899999999999999999999999999999999999999999999998443
Q ss_pred HHHHhcCCChhHHHHHHHH-HHHcCCH--HHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCCh
Q 005990 106 ESLKIQENNPATMLLKSQI-LYRSGEM--DACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSS 180 (666)
Q Consensus 106 ~~l~~~~~~~~~~~~la~~-~~~~g~~--~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 180 (666)
.|.+..++..+|.+ ++..|++ ++|+.+|++++..+|++.. .+++.++...|++++|+..|++++..+|++
T Consensus 74 -----~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 74 -----RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp -----HCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred -----CCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 34455666667776 5666776 7777777777766666555 666666666677777777776666666655
Q ss_pred H
Q 005990 181 F 181 (666)
Q Consensus 181 ~ 181 (666)
.
T Consensus 149 ~ 149 (177)
T 2e2e_A 149 I 149 (177)
T ss_dssp S
T ss_pred c
Confidence 4
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.30 E-value=5.5e-12 Score=115.48 Aligned_cols=129 Identities=9% Similarity=0.092 Sum_probs=100.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChh----------------H--HHHHHHHHHcCChhHHHHHHHHhhh
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSL----------------E--INFVAGLISAGRASEVQKTLDSLRV 175 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------~--~~l~~~~~~~g~~~~A~~~~~~~~~ 175 (666)
....+..+|.+++..|+|++|+..|++++...|.+. . .+++.++...|++++|+..|++++.
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456778889999999999999999999998777654 3 7788888888999999999999988
Q ss_pred cCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHH-HHHH
Q 005990 176 KATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAF-GAYT 254 (666)
Q Consensus 176 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~-~~~~ 254 (666)
.+|++..+++++|.++...|++++|+..|++++.+.|.. ..++..++.++...|+..++. ..|.
T Consensus 117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~~~~~~~~ 181 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN---------------LDIRNSYELCVNKLKEARKKDKLTFG 181 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHHHHHHC-------
T ss_pred hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999999999998888432 257788888888888777776 4455
Q ss_pred HHH
Q 005990 255 DII 257 (666)
Q Consensus 255 ~~l 257 (666)
.++
T Consensus 182 ~~f 184 (198)
T 2fbn_A 182 GMF 184 (198)
T ss_dssp ---
T ss_pred HHh
Confidence 444
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.30 E-value=5.5e-11 Score=104.99 Aligned_cols=109 Identities=15% Similarity=0.182 Sum_probs=98.0
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYC 94 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~ 94 (666)
.++.....++..+..++..|+|++|+.+|++++..+|++..+++.+|.+|+.+|+|++|+..|+++...
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------- 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV----------- 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------
Confidence 345678899999999999999999999999999999999999999999999999999999999998443
Q ss_pred HHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH
Q 005990 95 LYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE 150 (666)
Q Consensus 95 ~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 150 (666)
.|++..+++.+|.+++.+|++++|+..|++++..+|++..
T Consensus 75 ----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 75 ----------------DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred ----------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 4567888999999999999999999999999998888765
No 151
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.30 E-value=1.1e-10 Score=103.10 Aligned_cols=132 Identities=8% Similarity=0.053 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHH
Q 005990 54 EDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDA 133 (666)
Q Consensus 54 ~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~ 133 (666)
...++.+|.+++..|++++|+..|+++... .|.+..++..+|.++...|++++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------------------------~~~~~~~~~~~a~~~~~~~~~~~ 65 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL---------------------------NPSNAIYYGNRSLAYLRTECYGY 65 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------STTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------------------CCCChHHHHHHHHHHHHcCCHHH
Confidence 345666666777777777777766665222 46678899999999999999999
Q ss_pred HHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHH--HHHHhcCHHHHHHHHHHHHH
Q 005990 134 CVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTAC--SLAEMNKYTEAEQLLLTARR 209 (666)
Q Consensus 134 A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~l~~a~~ 209 (666)
|+..|++++...|++.. .+++.++...|++++|+..|++++..+|.+..++..++. .+...|++++|+..+.++..
T Consensus 66 A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 66 ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999998877 889999999999999999999999999998888855444 48889999999999999887
Q ss_pred hhh
Q 005990 210 IGQ 212 (666)
Q Consensus 210 ~~~ 212 (666)
+..
T Consensus 146 ~~~ 148 (166)
T 1a17_A 146 VVD 148 (166)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.29 E-value=6e-11 Score=104.77 Aligned_cols=100 Identities=9% Similarity=0.054 Sum_probs=95.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSL 191 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 191 (666)
+...++.+|.+++..|+|++|+.+|++++..+|++.. .+++.++...|++++|+..|++++..+|++..+++++|.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5678899999999999999999999999999999877 89999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhhhh
Q 005990 192 AEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 192 ~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
...|++++|+.+|++++.+.+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999965
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.28 E-value=8.1e-11 Score=99.02 Aligned_cols=121 Identities=17% Similarity=0.145 Sum_probs=88.0
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYC 94 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~ 94 (666)
.+|.....++..+..+...|++++|+..+++++..+|++..++..+|.++...|++++|+..++++...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------- 75 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI----------- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----------
Confidence 445667788888888888888888888888888888888888888888888888888888888877332
Q ss_pred HHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCC
Q 005990 95 LYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGR 162 (666)
Q Consensus 95 ~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~ 162 (666)
.|.+..+++.+|.++...|++++|+.+|++++...|++.. ..++.++...|+
T Consensus 76 ----------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 76 ----------------DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred ----------------CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 3445566677777777777777777777777666665544 445555544444
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.28 E-value=8.8e-11 Score=98.80 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=107.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSL 191 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 191 (666)
+...+..+|.+++..|++++|+..|++++...|++.. ..++.++...|++++|+..+++++...|++..+++.+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 5678899999999999999999999999999988776 88999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCCh
Q 005990 192 AEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNT 246 (666)
Q Consensus 192 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 246 (666)
...|++++|+.+|++++.+.+.. ..++..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDN---------------ETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccc---------------hHHHHHHHHHHHHHhcC
Confidence 99999999999999999998532 25888999999998876
No 155
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.28 E-value=2.1e-11 Score=103.61 Aligned_cols=106 Identities=14% Similarity=0.052 Sum_probs=90.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCCC-------hHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCC
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKATS-------SFE-----LAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDD 218 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~-----~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~ 218 (666)
.+.|..+...|++++|+..|++++..+|+ +.. +|+++|.++..+|+|++|+..|++++++.......
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~- 93 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL- 93 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC-
Confidence 67889999999999999999999999998 444 99999999999999999999999999991110000
Q ss_pred CCChhhHhhhhhhHH----HHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 005990 219 NFAEDDIEIELAPIA----VQLAYVQQLLGNTQEAFGAYTDIIKRNLADE 264 (666)
Q Consensus 219 ~~~~~~~~~~~~~~~----~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~ 264 (666)
.|+ ...+| +++|.++..+|++++|+..|+++++++|.+.
T Consensus 94 --~pd-----~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 94 --NQD-----EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp --TST-----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred --CCc-----hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 022 33688 9999999999999999999999999999774
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.27 E-value=9.3e-11 Score=107.54 Aligned_cols=163 Identities=10% Similarity=0.057 Sum_probs=126.6
Q ss_pred HHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhC-----CChhHHHHHHHHHHHHHcCCh
Q 005990 328 LHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL-----PDKSKIILLARAQVAAAANHP 402 (666)
Q Consensus 328 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~-----p~~~~~~~~~la~~~~~~g~~ 402 (666)
+..|++++|...++.+....+....++..+|.++...|++++|+.++++++... +.....++..++.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 568999999994444433223456788999999999999999999999998832 112344788899999999999
Q ss_pred hHHHHHHhcCcCC---CC-C----hhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCC
Q 005990 403 FIAAESLAKIPDI---QH-M----PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHG 474 (666)
Q Consensus 403 ~~A~~~l~~~~~~---~~-~----~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 474 (666)
++|+..++++++. .+ + ..++..++.++...|++++|..++++++...+.... ......++..+|.++...|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD-QVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHCc
Confidence 9999999999876 22 2 234688999999999999999999999998755432 2233445678999999999
Q ss_pred ChhhHHHHHHHHHHhcC
Q 005990 475 REEDASHLFEELVKTHG 491 (666)
Q Consensus 475 ~~~~A~~~~~~~l~~~p 491 (666)
++++|..+|++++....
T Consensus 162 ~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIFA 178 (203)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998753
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.27 E-value=2.6e-11 Score=100.73 Aligned_cols=98 Identities=14% Similarity=0.050 Sum_probs=68.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELA 230 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 230 (666)
..++.++...|++++|+..|++++..+|++.++++.+|.++...|++++|+..|++++.++|.. .
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---------------~ 85 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---------------I 85 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------H
Confidence 5666677777777777777777777777777777777777777777777777777777777432 2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 005990 231 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLAD 263 (666)
Q Consensus 231 ~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~ 263 (666)
.+++.+|.++...|++++|+..|++++..+|.+
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 477777777777777777777777777777654
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.26 E-value=9.6e-11 Score=99.80 Aligned_cols=102 Identities=12% Similarity=0.055 Sum_probs=97.3
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHH
Q 005990 112 ENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTAC 189 (666)
Q Consensus 112 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 189 (666)
+.+...++.+|.+++..|++++|+..|++++..+|++.. .+++.++...|++++|+..|++++..+|++..+++++|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 457889999999999999999999999999999999877 999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 190 SLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 190 ~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
++...|++++|+..|++++.+.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999999965
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.26 E-value=9.2e-12 Score=113.97 Aligned_cols=166 Identities=7% Similarity=0.054 Sum_probs=110.4
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhh-HHHHHHHHHhCCHHHHHHHHHh
Q 005990 32 ERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFN-YLKAYCLYRQNRLDEALESLKI 110 (666)
Q Consensus 32 ~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~a~~~~~~g~~~~A~~~l~~ 110 (666)
..|+|+.|.+.++......+.....+..+|.+++..|+|++|+..|.++....+... +... . ...-...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----~---~~~~~~~~-- 86 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ----I---LLDKKKNI-- 86 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH----H---HHHHHHHH--
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh----h---HHHHHHHH--
Confidence 345555555555544444444556677777777777777777777777644322110 0000 0 00000000
Q ss_pred cCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHH
Q 005990 111 QENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTA 188 (666)
Q Consensus 111 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 188 (666)
...++..+|.+++..|++++|+..|++++..+|++.. .++|.++...|++++|+..|++++..+|++..++..++
T Consensus 87 ---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 87 ---EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 1378899999999999999999999999999998877 89999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHH-HHHHHHHH
Q 005990 189 CSLAEMNKYTEAE-QLLLTARR 209 (666)
Q Consensus 189 ~~~~~~g~~~~A~-~~l~~a~~ 209 (666)
.++...++..++. ..|.+++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 164 LCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999888877 44555444
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.25 E-value=4.1e-11 Score=99.48 Aligned_cols=98 Identities=7% Similarity=-0.007 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAE 193 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 193 (666)
..++.+|.+++..|++++|+..|++++..+|++.. ..+|.++...|++++|+..|++++..+|++.++++++|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999888 8999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHhhhh
Q 005990 194 MNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 194 ~g~~~~A~~~l~~a~~~~~~ 213 (666)
.|++++|+..|++++++.|.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCcC
Confidence 99999999999999998854
No 161
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=1.1e-10 Score=124.23 Aligned_cols=191 Identities=10% Similarity=0.019 Sum_probs=160.4
Q ss_pred HHcCCh-hHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHhhhhhccCCCCChhhHh
Q 005990 158 ISAGRA-SEVQKTLDSLRVKATSSFELAYNTACSLAEMNK----------YTEAEQLLLTARRIGQETLTDDNFAEDDIE 226 (666)
Q Consensus 158 ~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 226 (666)
...|.+ ++|+..+++++..+|+++.+|+..+.++...|+ +++|+.++++++..+|++
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~------------ 106 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS------------ 106 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC------------
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC------------
Confidence 344444 578999999999999999999999999999998 999999999999999653
Q ss_pred hhhhhHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCCCChhHHHHHhHHHhhhhhhhhhhh
Q 005990 227 IELAPIAVQLAYVQQLLG--NTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLA 304 (666)
Q Consensus 227 ~~~~~~~~~la~~~~~~g--~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~ 304 (666)
..+|...+.++...| +++++++.++++++.+|.+...+
T Consensus 107 ---y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW------------------------------------- 146 (567)
T 1dce_A 107 ---YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCW------------------------------------- 146 (567)
T ss_dssp ---HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHH-------------------------------------
T ss_pred ---HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHH-------------------------------------
Confidence 269999999999999 66999999999999999774222
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHhccccCCCCchHHHHHHHHHHhh--------------CChhH
Q 005990 305 RVLDLRLSPKQREAIYANRVLLLLHAN-KMDQARELVAALPDMFPDSVMPLLLQAAVLVRE--------------NKAGK 369 (666)
Q Consensus 305 ~~l~~~~~~~q~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~--------------g~~~~ 369 (666)
.+++.+....| .++++++++.+++..+|.+..+|..++.++... +.+++
T Consensus 147 ----------------~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~e 210 (567)
T 1dce_A 147 ----------------DYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK 210 (567)
T ss_dssp ----------------HHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHH
T ss_pred ----------------HHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHH
Confidence 22245555667 889999999999999999999999999988774 66899
Q ss_pred HHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhH------------HHHHHhcCcCCCC
Q 005990 370 AEELLGQFAEKLPDKSKIILLARAQVAAAANHPFI------------AAESLAKIPDIQH 417 (666)
Q Consensus 370 A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~------------A~~~l~~~~~~~~ 417 (666)
|++++.+++..+|++.. +|+.+..++...+.+++ |+..|.+++.+.|
T Consensus 211 el~~~~~ai~~~P~~~s-aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~ 269 (567)
T 1dce_A 211 ELELVQNAFFTDPNDQS-AWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGS 269 (567)
T ss_dssp HHHHHHHHHHHCSSCSH-HHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTB
T ss_pred HHHHHHHHHhhCCCCcc-HHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccc
Confidence 99999999999999776 88888888888888666 5555666665554
No 162
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.22 E-value=1.8e-10 Score=101.04 Aligned_cols=137 Identities=15% Similarity=0.088 Sum_probs=110.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCh---hH-----HHHHHHHHHcCChhHHHHHHHHhhhcCCC------h
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDS---LE-----INFVAGLISAGRASEVQKTLDSLRVKATS------S 180 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~ 180 (666)
..++..+|.+++..|++++|+..|++++...+.. .. .+++.++...|++++|+..|++++...+. .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 3567888889999999999999999887753321 11 77888888899999999999888765432 2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 005990 181 FELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRN 260 (666)
Q Consensus 181 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~ 260 (666)
..+++++|.++...|++++|+.+|++++.+..... + ......++..+|.++...|++++|+..+++++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--------~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--------D-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------C-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--------c-hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999875421 1 13345789999999999999999999999998754
No 163
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.22 E-value=1.2e-11 Score=128.92 Aligned_cols=165 Identities=8% Similarity=-0.046 Sum_probs=130.5
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhc
Q 005990 32 ERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQ 111 (666)
Q Consensus 32 ~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 111 (666)
..++|++|+..++..+...|.+..+++.+|.+++..|+|++|+..|+++..+.+.... . ..++..+ ..
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~-~~~~~~~---~~ 313 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--------L-SEKESKA---SE 313 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--------C-CHHHHHH---HH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--------C-ChHHHHH---HH
Confidence 4456778888888888888888999999999999999999999999999655433210 0 0000000 01
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHH
Q 005990 112 ENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTAC 189 (666)
Q Consensus 112 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 189 (666)
+....+++.+|.+|+.+|+|++|+..|++++..+|++.. .+++.+|...|++++|+..|++++..+|++..++.+++.
T Consensus 314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 113578899999999999999999999999999999877 999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHH-HHHHH
Q 005990 190 SLAEMNKYTEAEQL-LLTAR 208 (666)
Q Consensus 190 ~~~~~g~~~~A~~~-l~~a~ 208 (666)
++...+++++|... |.+++
T Consensus 394 ~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999988753 44433
No 164
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.21 E-value=4.3e-10 Score=93.58 Aligned_cols=115 Identities=19% Similarity=0.231 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLA 192 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 192 (666)
..+++.+|.++...|++++|+.+|++++...|++.. ..++.++...|++++|+..|++++...|.+..+++.+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 577889999999999999999999999998888766 888999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcC
Q 005990 193 EMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLG 244 (666)
Q Consensus 193 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 244 (666)
..|++++|+.+|++++...+.. ..++..++.++..+|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNN---------------AEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHhcc
Confidence 9999999999999999988532 247788888877654
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=6.8e-10 Score=95.73 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=96.9
Q ss_pred CCCCCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhh
Q 005990 12 SPSQPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSD---EDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFN 88 (666)
Q Consensus 12 ~~~~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 88 (666)
....+|.+...++..+..++..|+|++|+..++++++.+|++ ..++..+|.++...|+|++|+..++++...
T Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----- 94 (148)
T 2dba_A 20 PATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK----- 94 (148)
T ss_dssp CCCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CCccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----
Confidence 334567889999999999999999999999999999999987 889999999999999999999999887332
Q ss_pred HHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH
Q 005990 89 YLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE 150 (666)
Q Consensus 89 ~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 150 (666)
.|.+..+++.+|.+++..|++++|+.+|++++..+|++..
T Consensus 95 ----------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 95 ----------------------DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134 (148)
T ss_dssp ----------------------TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred ----------------------CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4566778888888888999999999999988888887665
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.20 E-value=1.5e-10 Score=102.00 Aligned_cols=99 Identities=14% Similarity=0.146 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CCChhH--HHHHHHHHHcCChhHHHHHHHHhh
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQKS------------------KIDSLE--INFVAGLISAGRASEVQKTLDSLR 174 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 174 (666)
...+..+|..++..|+|++|+..|.+++.. .|.... .+++.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 467789999999999999999999999987 444434 899999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 175 VKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 175 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
..+|++..+++.+|.+|..+|++++|+..|++++.++|.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999965
No 167
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.19 E-value=7.9e-10 Score=91.94 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=97.4
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHc
Q 005990 50 NPSD-EDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRS 128 (666)
Q Consensus 50 ~p~~-~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~ 128 (666)
+|.+ ..+++.+|.++...|++++|+..|+++... .|.+..+++.+|.++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------------------------~~~~~~~~~~la~~~~~~ 56 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---------------------------DPNNAEAWYNLGNAYYKQ 56 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------CTTCHHHHHHHHHHHHHT
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------------------CcCcHHHHHHHHHHHHHh
Confidence 4544 677888888888888888888888877322 355677888899999999
Q ss_pred CCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhc
Q 005990 129 GEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMN 195 (666)
Q Consensus 129 g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 195 (666)
|++++|+.+|++++...|++.. .+++.++...|++++|+..|++++..+|++..++.+++.++...|
T Consensus 57 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 57 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999988887766 788889999999999999999999999999999999998887654
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.18 E-value=3.2e-10 Score=96.52 Aligned_cols=106 Identities=12% Similarity=0.166 Sum_probs=93.8
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHH
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYC 94 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~ 94 (666)
.+|.+...++..+..++..|+|++|+..+++++..+|++..+++.+|.++..+|++++|+..|+++...
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------- 72 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL----------- 72 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------
Confidence 346778899999999999999999999999999999999999999999999999999999999988433
Q ss_pred HHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 005990 95 LYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKID 147 (666)
Q Consensus 95 ~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 147 (666)
.|.+..+++.+|.++...|++++|+..|++++...|+
T Consensus 73 ----------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 ----------------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----------------CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 4567788999999999999999999999999887665
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.15 E-value=1.9e-10 Score=119.75 Aligned_cols=131 Identities=13% Similarity=0.134 Sum_probs=114.5
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCh---------------hH--HHHHHHHHHcCChhHHHHHHHHhh
Q 005990 112 ENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDS---------------LE--INFVAGLISAGRASEVQKTLDSLR 174 (666)
Q Consensus 112 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~--~~l~~~~~~~g~~~~A~~~~~~~~ 174 (666)
|.....++.+|.+++..|+|++|+..|++++...|.+ .. .+++.+|...|++++|+..|++++
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3456788999999999999999999999999988876 23 899999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHH-HH
Q 005990 175 VKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFG-AY 253 (666)
Q Consensus 175 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~-~~ 253 (666)
..+|++..+++++|.+|..+|++++|+..|+++++++|.. ..++..++.++..+|++++|.. .|
T Consensus 345 ~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~---------------~~a~~~l~~~~~~~~~~~~a~~~~~ 409 (457)
T 1kt0_A 345 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN---------------KAARLQISMCQKKAKEHNERDRRIY 409 (457)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998542 2589999999999999988764 44
Q ss_pred HHHH
Q 005990 254 TDII 257 (666)
Q Consensus 254 ~~~l 257 (666)
.+++
T Consensus 410 ~~~f 413 (457)
T 1kt0_A 410 ANMF 413 (457)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 4444
No 170
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.14 E-value=9.6e-10 Score=90.39 Aligned_cols=99 Identities=13% Similarity=0.039 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLA 192 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 192 (666)
...++.+|.+++..|++++|+..|++++...|++.. .+++.++...|++++|+..+++++..+|++..+++++|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 467888999999999999999999999999988777 888999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHHhhhh
Q 005990 193 EMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 193 ~~g~~~~A~~~l~~a~~~~~~ 213 (666)
..|++++|+..|++++...+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT
T ss_pred HHhhHHHHHHHHHHHHHcCCC
Confidence 999999999999999998854
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.14 E-value=1e-09 Score=92.15 Aligned_cols=98 Identities=11% Similarity=0.013 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChh---H--HHHHHHHHHcCChhHHHHHHHHhhhcCCCh---HHHHHHH
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSL---E--INFVAGLISAGRASEVQKTLDSLRVKATSS---FELAYNT 187 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 187 (666)
..++.+|.+++..|++++|+..|++++...|++. . ..+|.++...|++++|+..|++++...|++ .++++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4577889999999999999999999999888776 3 888999999999999999999999999988 8899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 188 ACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 188 a~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
|.++...|++++|+..|++++...|.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999854
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.13 E-value=1.9e-09 Score=111.81 Aligned_cols=136 Identities=13% Similarity=0.010 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--------HHHHHHHHHcCChhHHHHHHHHhhhc------CCChH
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--------INFVAGLISAGRASEVQKTLDSLRVK------ATSSF 181 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~ 181 (666)
.++..+|.+|...|++++|+++|.+++...+.... .+++.++...|++++|+..++.++.. .+...
T Consensus 56 ~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (434)
T 4b4t_Q 56 TSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH 135 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 35678999999999999999999999875333211 45566666689999999999888653 23456
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 005990 182 ELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRN 260 (666)
Q Consensus 182 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~ 260 (666)
.++.++|.+|...|+|.+|+.++++++....... + .+....++..++.+|...|++++|..+|++++...
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLD--------D-KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS--------C-STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc--------c-chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999998875421 1 13455799999999999999999999999988543
No 173
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.13 E-value=5.3e-10 Score=98.38 Aligned_cols=99 Identities=11% Similarity=0.007 Sum_probs=91.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhc------------------CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVK------------------ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQ 212 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 212 (666)
...|..++..|++++|+..|.+++.. +|....+++++|.+|+..|+|++|+..+++++.++|
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 67889999999999999999999988 777889999999999999999999999999999985
Q ss_pred hhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 005990 213 ETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADE 264 (666)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~ 264 (666)
.. ..+++.+|.+|..+|++++|+..|++++.++|.+.
T Consensus 95 ~~---------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 95 TN---------------EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp TC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cc---------------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 42 36999999999999999999999999999999886
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=8.2e-10 Score=95.23 Aligned_cols=102 Identities=10% Similarity=0.110 Sum_probs=95.1
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCh---hH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHH
Q 005990 112 ENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDS---LE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYN 186 (666)
Q Consensus 112 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 186 (666)
+.+...++.+|..++..|++++|+.+|++++...|++ .. .+++.++...|++++|+..|++++..+|++..++++
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 4477889999999999999999999999999999986 33 889999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 187 TACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 187 la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
+|.++...|++++|+.+|++++.+.+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999854
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.12 E-value=7.5e-11 Score=117.54 Aligned_cols=136 Identities=15% Similarity=0.158 Sum_probs=86.2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChh------------------H-HHHHHHHHHcCChhHHHHHHHHhh
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSL------------------E-INFVAGLISAGRASEVQKTLDSLR 174 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------------------~-~~l~~~~~~~g~~~~A~~~~~~~~ 174 (666)
....+..+|.+++..|+|++|+..|++++...|++. . .+++.+|...|++++|+..|++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356788999999999999999999999999888764 2 788899999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHH-HHHcCChHHHHHHH
Q 005990 175 VKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYV-QQLLGNTQEAFGAY 253 (666)
Q Consensus 175 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~eA~~~~ 253 (666)
..+|++..+++++|.+|..+|++++|+..|++++.+.|.. ..++..++.+ ....+..+++...|
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~---------------~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD---------------KAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888542 2477777777 44566778888899
Q ss_pred HHHHhhCCCCH
Q 005990 254 TDIIKRNLADE 264 (666)
Q Consensus 254 ~~~l~~~~~~~ 264 (666)
.+++...|.+.
T Consensus 323 ~~~l~~~p~~~ 333 (338)
T 2if4_A 323 KGIFKGKDEGG 333 (338)
T ss_dssp -----------
T ss_pred HHhhCCCCCCC
Confidence 99988887654
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.11 E-value=1.3e-09 Score=91.43 Aligned_cols=103 Identities=13% Similarity=0.043 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCCChH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKATSSF---ELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEI 227 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 227 (666)
+.++.++...|++++|+..|++++...|++. .+++.+|.++...|++++|+..|++++...|.. +
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~------------~ 73 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH------------D 73 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS------------T
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC------------c
Confidence 5678889999999999999999999888877 899999999999999999999999999998642 1
Q ss_pred hhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHh
Q 005990 228 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADES 265 (666)
Q Consensus 228 ~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~ 265 (666)
....+++.+|.++..+|++++|+..|++++...|++..
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 12358999999999999999999999999999998763
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.11 E-value=2.8e-11 Score=126.58 Aligned_cols=124 Identities=8% Similarity=0.023 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAE 193 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 193 (666)
..+..+|.+++..|++++|+..|+++++.+|++.. .+++.++...|++++|+..|++++..+|++..+++++|.+|..
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45667788889999999999999999999999877 9999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHH--HHHcCChHHHHHHHH
Q 005990 194 MNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYV--QQLLGNTQEAFGAYT 254 (666)
Q Consensus 194 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~eA~~~~~ 254 (666)
+|++++|+..|++++++.+.. ..++..++.+ +..+|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHD---------------KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTC---------------TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999998542 1467777777 888999999999999
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.11 E-value=3.3e-10 Score=92.31 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=95.2
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCC--hHHHHHHH
Q 005990 112 ENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATS--SFELAYNT 187 (666)
Q Consensus 112 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l 187 (666)
|++..++..+|.+++..|++++|+..|++++...|.+.. .+++.++...|++++|+..|++++...|. +..+++++
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 567788999999999999999999999999999998777 88999999999999999999999999999 99999999
Q ss_pred HHHHHHh-cCHHHHHHHHHHHHHhhhh
Q 005990 188 ACSLAEM-NKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 188 a~~~~~~-g~~~~A~~~l~~a~~~~~~ 213 (666)
|.++... |++++|+.+|++++...+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999999 9999999999999988754
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.09 E-value=5.9e-10 Score=93.70 Aligned_cols=98 Identities=11% Similarity=0.092 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCCh-------HHHHH
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSS-------FELAY 185 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~ 185 (666)
...++.+|.+++..|++++|+.+|++++...|++.. .+++.++...|++++|+..|++++...|.+ ..+++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 467888999999999999999999999999888777 888999999999999999999999887766 88999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhh
Q 005990 186 NTACSLAEMNKYTEAEQLLLTARRIGQ 212 (666)
Q Consensus 186 ~la~~~~~~g~~~~A~~~l~~a~~~~~ 212 (666)
++|.++...|++++|+.+|++++...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999874
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.09 E-value=1.6e-10 Score=120.69 Aligned_cols=126 Identities=15% Similarity=0.202 Sum_probs=101.2
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHh
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQ 98 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~ 98 (666)
....++..+..+...|+|++|+..++++++.+|++..++..+|.+|..+|+|++|+..++++...
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------------- 69 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------------- 69 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------------
Confidence 34456667788899999999999999999999999999999999999999999999999998544
Q ss_pred CCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHH--HHHcCChhHHHHHHH
Q 005990 99 NRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAG--LISAGRASEVQKTLD 171 (666)
Q Consensus 99 g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~--~~~~g~~~~A~~~~~ 171 (666)
.|.+..+++.+|.+|..+|++++|+..|+++++..|++.. .+++.+ +...|++++|+..++
T Consensus 70 ------------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 70 ------------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp ------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred ------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4556777888888888888888888888888888777665 555555 677788888888887
No 181
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.08 E-value=1.7e-07 Score=97.92 Aligned_cols=111 Identities=10% Similarity=0.085 Sum_probs=60.6
Q ss_pred hc-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhc
Q 005990 33 RS-EFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQ 111 (666)
Q Consensus 33 ~~-~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 111 (666)
.| +...|..+|++++...|. |+++.+..+|+++....|.+-+...|+
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~----------------- 54 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSYNLDLWMLYI----------------- 54 (493)
T ss_dssp -----CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHH-----------------
T ss_pred cCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCCCHHHHHHHH-----------------
Confidence 45 367788888888887775 778888888888855433333333333
Q ss_pred CCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHhh---CCChhH--HHHHHHHH----HcCChhHHHHHHHHhhhcCCChH
Q 005990 112 ENNPATMLLKSQILYRSGE-MDACVEFYQKLQKS---KIDSLE--INFVAGLI----SAGRASEVQKTLDSLRVKATSSF 181 (666)
Q Consensus 112 ~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~---~p~~~~--~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~ 181 (666)
....+.+. .+.....|+.++.. ++.+.. ..++..+. ..++.+.+..+|++++.....+.
T Consensus 55 -----------~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~ 123 (493)
T 2uy1_A 55 -----------EYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSL 123 (493)
T ss_dssp -----------HHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTH
T ss_pred -----------HHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhH
Confidence 33222221 23445677777653 344433 22222211 23567789999999998655554
Q ss_pred HHHHH
Q 005990 182 ELAYN 186 (666)
Q Consensus 182 ~~~~~ 186 (666)
+-++.
T Consensus 124 ~~lw~ 128 (493)
T 2uy1_A 124 SELWK 128 (493)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 182
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.08 E-value=5.4e-10 Score=90.97 Aligned_cols=106 Identities=12% Similarity=-0.043 Sum_probs=94.1
Q ss_pred CCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCCh
Q 005990 145 KIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAE 222 (666)
Q Consensus 145 ~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 222 (666)
+|++.. ..++.++...|++++|+..|++++...|.+..+++++|.++...|++++|+.+|++++...+..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-------- 73 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE-------- 73 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT--------
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc--------
Confidence 344444 7889999999999999999999999999999999999999999999999999999999988430
Q ss_pred hhHhhhhhhHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCC
Q 005990 223 DDIEIELAPIAVQLAYVQQLL-GNTQEAFGAYTDIIKRNLAD 263 (666)
Q Consensus 223 ~~~~~~~~~~~~~la~~~~~~-g~~~eA~~~~~~~l~~~~~~ 263 (666)
....++..+|.++... |++++|+..+++++...|.+
T Consensus 74 -----~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 74 -----YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp -----TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred -----chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 0125899999999999 99999999999999998865
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.08 E-value=8.5e-10 Score=111.06 Aligned_cols=123 Identities=16% Similarity=0.156 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------hCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhc
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQK----------------SKIDSLE--INFVAGLISAGRASEVQKTLDSLRVK 176 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~----------------~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 176 (666)
...+..+|..++..|++++|+..|++++. ..|.... .+++.++...|++++|+..+++++..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688899999999999999999999998 3344333 89999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHH
Q 005990 177 ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGA 252 (666)
Q Consensus 177 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~ 252 (666)
+|++..+++++|.+|..+|++++|+..|++++++.+.. ..++..++.++..+++++++...
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~---------------~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED---------------KAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998542 25888899999998888877643
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.07 E-value=3.4e-10 Score=93.40 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=72.1
Q ss_pred cCChhHHHHHHHHhhhc---CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHH
Q 005990 160 AGRASEVQKTLDSLRVK---ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQL 236 (666)
Q Consensus 160 ~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 236 (666)
.|++++|+..|++++.. +|++..+++++|.++...|++++|+.+|++++.+.|.. ..+++.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l 67 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---------------QALRVFY 67 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------hHHHHHH
Confidence 57788888888888887 57788888888888888888888888888888887432 2578888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCHhH
Q 005990 237 AYVQQLLGNTQEAFGAYTDIIKRNLADESS 266 (666)
Q Consensus 237 a~~~~~~g~~~eA~~~~~~~l~~~~~~~~~ 266 (666)
|.++..+|++++|+..|++++...|.+...
T Consensus 68 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 68 AMVLYNLGRYEQGVELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 888888888888888888888888877643
No 185
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.07 E-value=1.7e-09 Score=88.92 Aligned_cols=110 Identities=15% Similarity=0.020 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHH
Q 005990 319 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA 398 (666)
Q Consensus 319 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~ 398 (666)
.++..+..+...|++++|+..+++++..+|++..+++.+|.++...|++++|+..+++++...|.+.. ++..++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK-GYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH-HHHHHHHHHHH
Confidence 34666888999999999999999999999999999999999999999999999999999999998655 88899999999
Q ss_pred cCChhHHHHHHhcCcCCCC-ChhHHHHHHHHH
Q 005990 399 ANHPFIAAESLAKIPDIQH-MPATVATLVALK 429 (666)
Q Consensus 399 ~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~ 429 (666)
.|++++|+..++++++..| ++.++..++.+.
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999988 777777666654
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.06 E-value=1.1e-10 Score=116.30 Aligned_cols=150 Identities=9% Similarity=0.072 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHH
Q 005990 54 EDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDA 133 (666)
Q Consensus 54 ~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~ 133 (666)
...++.+|.+++..|+|++|+..|+++....+... .+...|++.++...+. ..+++.+|.+|+.+|+|++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~-----~~~~~nla~~~~~~g~~~~ 248 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK-----NPCHLNIAACLIKLKRYDE 248 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH-----THHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH-----HHHHHHHHHHHHHcCCHHH
Confidence 45566677777777777777777777654433321 1223344444444432 2488999999999999999
Q ss_pred HHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHh
Q 005990 134 CVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACS-LAEMNKYTEAEQLLLTARRI 210 (666)
Q Consensus 134 A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~l~~a~~~ 210 (666)
|+..|++++..+|++.. .+++.+|...|++++|+..|++++..+|++..++.+++.+ ....+..+.+...|.+++..
T Consensus 249 A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 249 AIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999998877 8999999999999999999999999999999999999988 55567788899999999988
Q ss_pred hhh
Q 005990 211 GQE 213 (666)
Q Consensus 211 ~~~ 213 (666)
.+.
T Consensus 329 ~p~ 331 (338)
T 2if4_A 329 KDE 331 (338)
T ss_dssp ---
T ss_pred CCC
Confidence 854
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.03 E-value=1.8e-09 Score=94.50 Aligned_cols=139 Identities=9% Similarity=-0.121 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHhhCChhHHHHHHHHHHhhCCCh-----hHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-------Ch
Q 005990 352 MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-----SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-------MP 419 (666)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~-----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-------~~ 419 (666)
.++..+|.++...|++++|+.++++++...+.. ...++..++.++...|++++|+.+++++++..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 355666777777777777777777777654321 113667788888888888888888888766443 13
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcC
Q 005990 420 ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG 491 (666)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 491 (666)
.++..++.++...|++++|..++++++...+... .......++..+|.++...|++++|...|+++++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc-chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999998875543 2234455777899999999999999999999987654
No 188
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.03 E-value=6.2e-10 Score=94.36 Aligned_cols=91 Identities=9% Similarity=0.005 Sum_probs=80.1
Q ss_pred HcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhhhhhccCCCCChhhHhhh
Q 005990 159 SAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKY----------TEAEQLLLTARRIGQETLTDDNFAEDDIEIE 228 (666)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 228 (666)
+.+.|++|+..+++++..+|++.++|+++|.++...+++ ++|+..|++|++++|+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~--------------- 78 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK--------------- 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---------------
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---------------
Confidence 345688899999999999999999999999999988875 5999999999999954
Q ss_pred hhhHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhhCCCCH
Q 005990 229 LAPIAVQLAYVQQLLG-----------NTQEAFGAYTDIIKRNLADE 264 (666)
Q Consensus 229 ~~~~~~~la~~~~~~g-----------~~~eA~~~~~~~l~~~~~~~ 264 (666)
...+++++|.+|..+| ++++|+.+|+++++++|++.
T Consensus 79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 2369999999999885 89999999999999999885
No 189
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.02 E-value=4.1e-09 Score=88.43 Aligned_cols=109 Identities=12% Similarity=0.099 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 005990 388 ILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEA 466 (666)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l 466 (666)
.++.++.++...|++++|+.+|++++...| ++.++..++.+|...|++++|+.+|++++...+...........++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 677788888888888888888888888777 7778889999999999999999999999998876533322234578899
Q ss_pred HHHHHhCCChhhHHHHHHHHHHhcCChHHH
Q 005990 467 ASFKLRHGREEDASHLFEELVKTHGSIEAL 496 (666)
Q Consensus 467 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~l 496 (666)
|.++...|++++|...|++++...|+....
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 115 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHRTPDVL 115 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999999999974443
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.01 E-value=5e-10 Score=94.93 Aligned_cols=88 Identities=10% Similarity=0.029 Sum_probs=79.6
Q ss_pred HHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCCh----------hHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 005990 126 YRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRA----------SEVQKTLDSLRVKATSSFELAYNTACSLAE 193 (666)
Q Consensus 126 ~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 193 (666)
-+.+.|++|+..|++++..+|++.+ ++++.++...+++ ++|+..|++++.++|+..++++++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4556789999999999999999888 8899999888765 599999999999999999999999999998
Q ss_pred hc-----------CHHHHHHHHHHHHHhhhh
Q 005990 194 MN-----------KYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 194 ~g-----------~~~~A~~~l~~a~~~~~~ 213 (666)
+| ++++|+.+|++|++++|+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 85 899999999999999964
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.99 E-value=7.1e-10 Score=91.39 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=76.6
Q ss_pred HcCCHHHHHHHHHHHHhhC---CChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHH
Q 005990 127 RSGEMDACVEFYQKLQKSK---IDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAE 201 (666)
Q Consensus 127 ~~g~~~~A~~~~~~~l~~~---p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 201 (666)
..|++++|+.+|++++..+ |++.. .++|.++...|++++|+..|++++..+|++..+++++|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4689999999999999984 55555 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 005990 202 QLLLTARRIGQE 213 (666)
Q Consensus 202 ~~l~~a~~~~~~ 213 (666)
..|++++...+.
T Consensus 82 ~~~~~al~~~p~ 93 (117)
T 3k9i_A 82 ELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhCCC
Confidence 999999999854
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.94 E-value=5.2e-09 Score=105.31 Aligned_cols=90 Identities=7% Similarity=-0.004 Sum_probs=66.6
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSL 191 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 191 (666)
+..++..+|.+++.+|++++|+..|++++..+|++.. .+++.+|...|++++|+..|++++..+|++..++..++.++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456677777777777777777777777777776665 67777777777777777777777777777777778888888
Q ss_pred HHhcCHHHHHHH
Q 005990 192 AEMNKYTEAEQL 203 (666)
Q Consensus 192 ~~~g~~~~A~~~ 203 (666)
...++++++...
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 777777776543
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.92 E-value=1.5e-08 Score=104.97 Aligned_cols=131 Identities=8% Similarity=-0.094 Sum_probs=111.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-----CCChhH-----HHHHHHHHHcCChhHHHHHHHHhhh--------cCCChHH
Q 005990 121 KSQILYRSGEMDACVEFYQKLQKS-----KIDSLE-----INFVAGLISAGRASEVQKTLDSLRV--------KATSSFE 182 (666)
Q Consensus 121 la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~ 182 (666)
.+..+..+|+|++|+.+|++++.. .++++. .+|+.+|..+|++++|+.++++++. .+|+...
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 344567899999999999999873 556555 8999999999999999999999876 3455667
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005990 183 LAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 183 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~ 258 (666)
.++++|.+|..+|+|++|+.+|++|+.+....++.+. +....+...++.++..+|.+++|...|.++.+
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H-------p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH-------PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999877765332 55667889999999999999999999998864
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.83 E-value=2e-08 Score=82.32 Aligned_cols=82 Identities=10% Similarity=-0.065 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 005990 132 DACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARR 209 (666)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 209 (666)
++|+..|++++..+|++.. .++|.++...|++++|+..|++++..+|++..+++++|.++...|++++|+..|++++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3678899999999998877 89999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh
Q 005990 210 IGQE 213 (666)
Q Consensus 210 ~~~~ 213 (666)
+.+.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 9864
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.79 E-value=4.5e-09 Score=85.43 Aligned_cols=92 Identities=12% Similarity=0.088 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCCh------HHHHHH
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSS------FELAYN 186 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~ 186 (666)
...+..+|.+++..|++++|+..|++++...|++.. .++|.++...|++++|+..|++++..+|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 467889999999999999999999999999998877 899999999999999999999999999998 889999
Q ss_pred HHHHHHHhcCHHHHHHHHHH
Q 005990 187 TACSLAEMNKYTEAEQLLLT 206 (666)
Q Consensus 187 la~~~~~~g~~~~A~~~l~~ 206 (666)
+|.++...|+++.|+..|++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 99999999988877665543
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.79 E-value=6e-09 Score=84.66 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=75.0
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchh---------hhH
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFD---------FNY 89 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~ 89 (666)
+...++..+..++..|+|++|+..+++++..+|+++.+++.+|.++..+|++++|+..|+++....+. .++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999766443 344
Q ss_pred HHHHHHHHhCCHHHHHHHHHh
Q 005990 90 LKAYCLYRQNRLDEALESLKI 110 (666)
Q Consensus 90 ~~a~~~~~~g~~~~A~~~l~~ 110 (666)
.++.++..+|++++|+..++.
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 555555555555555444443
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.78 E-value=2e-08 Score=82.21 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=76.9
Q ss_pred hHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHc
Q 005990 164 SEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLL 243 (666)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 243 (666)
++|+..|++++..+|++..+++++|.++...|++++|+.+|++++.+.+. ...+++.+|.++..+
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT---------------YSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---------------cHHHHHHHHHHHHHc
Confidence 46888999999999999999999999999999999999999999999853 235899999999999
Q ss_pred CChHHHHHHHHHHHhhCCC
Q 005990 244 GNTQEAFGAYTDIIKRNLA 262 (666)
Q Consensus 244 g~~~eA~~~~~~~l~~~~~ 262 (666)
|++++|+..|++++...|.
T Consensus 67 g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 67 GDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccc
Confidence 9999999999999988764
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.70 E-value=2.4e-07 Score=95.93 Aligned_cols=101 Identities=14% Similarity=0.044 Sum_probs=85.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhc--------CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChh
Q 005990 152 NFVAGLISAGRASEVQKTLDSLRVK--------ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAED 223 (666)
Q Consensus 152 ~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 223 (666)
..+..+...|++++|+..+++++.. +|+....+.++|.+|..+|+|++|+.++++++.+....++.+
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~----- 388 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN----- 388 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-----
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-----
Confidence 3344566799999999999988762 345667899999999999999999999999999987766532
Q ss_pred hHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005990 224 DIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 224 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~ 259 (666)
.++++..+++||.+|..+|++++|+.+|++++.+
T Consensus 389 --Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 389 --NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp --CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2677889999999999999999999999999854
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.70 E-value=1.3e-07 Score=73.31 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=75.2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSL 191 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 191 (666)
+..+++.+|.+++..|++++|+..|++++...|++.. .+++.++...|++++|+..|++++..+|++..+++++|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4568889999999999999999999999999998777 88999999999999999999999999999999999999998
Q ss_pred HHhc
Q 005990 192 AEMN 195 (666)
Q Consensus 192 ~~~g 195 (666)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 8765
No 200
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.65 E-value=8.5e-07 Score=92.64 Aligned_cols=178 Identities=11% Similarity=0.002 Sum_probs=134.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhccccC-CCCchHHHHHHHHHHhhC---------ChhHHHHHHHHHHhhCCChhHHHH
Q 005990 320 YANRVLLLLHANKMDQARELVAALPDMF-PDSVMPLLLQAAVLVREN---------KAGKAEELLGQFAEKLPDKSKIIL 389 (666)
Q Consensus 320 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g---------~~~~A~~~l~~~~~~~p~~~~~~~ 389 (666)
+.+....+.+.|++++|.++|+++.... .-+...+..+..++...+ ..++|..+|+.+....-......+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445677889999999999999998763 223444544445555443 368899999998876422224478
Q ss_pred HHHHHHHHHcCChhHHHHHHhcCcCC--CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 005990 390 LARAQVAAAANHPFIAAESLAKIPDI--QHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAA 467 (666)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~ 467 (666)
..+...|.+.|++++|..+|+.+... .|+...+..+...|.+.|+.++|..+|+.+.+.. ..++. ..+..+.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G---~~Pd~---~ty~~Li 182 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE---VVPEE---PELAALL 182 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CCCCH---HHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCCH---HHHHHHH
Confidence 88999999999999999999998764 4577788999999999999999999999987532 22232 2566788
Q ss_pred HHHHhCCChhhHHHHHHHHHHhc--CChHHHHHHHHhh
Q 005990 468 SFKLRHGREEDASHLFEELVKTH--GSIEALVGLVTTS 503 (666)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~l~~~--p~~~~l~~l~~~~ 503 (666)
..+.+.|+.++|.++|+++.+.. |+..+...++..+
T Consensus 183 ~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 99999999999999999998755 7755554444443
No 201
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.62 E-value=3.3e-06 Score=88.14 Aligned_cols=153 Identities=14% Similarity=0.074 Sum_probs=107.9
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC---------HHHHHHHHHhhhcc----chhhh
Q 005990 23 LFTSLNRHIERSEFEQAVKVADQVLSTN-PSDEDAMRCKVVALIKADN---------IDDALSTIQSSQKF----TFDFN 88 (666)
Q Consensus 23 l~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~a~~~~~~~~~~~g~---------~~~A~~~~~~~~~~----~~~~~ 88 (666)
+...+..+.+.|++++|+.+|+++.+.. .-|..+|..+..++...+. +++|.++|+++... +...+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4555777889999999999999998763 3367788888877776554 67888888887432 22344
Q ss_pred HHHHHHHHHhCCHHHHHHHHHhc-----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCChhH-HHHHHHHHHc
Q 005990 89 YLKAYCLYRQNRLDEALESLKIQ-----ENNPATMLLKSQILYRSGEMDACVEFYQKLQKS--KIDSLE-INFVAGLISA 160 (666)
Q Consensus 89 ~~~a~~~~~~g~~~~A~~~l~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~-~~l~~~~~~~ 160 (666)
..+...|.+.|++++|+++++.. ..+...+..+...|.+.|++++|.++|+++... .|+... ..+..+|...
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 46666777777777777777652 226667777777777777777777777777653 455544 6666677777
Q ss_pred CChhHHHHHHHHhhh
Q 005990 161 GRASEVQKTLDSLRV 175 (666)
Q Consensus 161 g~~~~A~~~~~~~~~ 175 (666)
|+.++|..+|+++..
T Consensus 189 g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 189 KNADKVYKTLQRLRD 203 (501)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777777654
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.61 E-value=1.2e-07 Score=75.18 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=63.4
Q ss_pred CCCCcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc
Q 005990 15 QPPPPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKF 83 (666)
Q Consensus 15 ~~p~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~ 83 (666)
.+|.+...++..+..+...|+|++|+..|+++++.+|++..+++.+|.+|..+|++++|+..|+++..+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 368899999999999999999999999999999999999999999999999999999999999998554
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.60 E-value=4.5e-07 Score=70.19 Aligned_cols=66 Identities=17% Similarity=0.267 Sum_probs=61.1
Q ss_pred CcHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc
Q 005990 18 PPIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKF 83 (666)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~ 83 (666)
.+...++..+..+...|++++|+..+++++..+|++..+++.+|.++...|++++|+..|+++...
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 457788999999999999999999999999999999999999999999999999999999998544
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.59 E-value=2.6e-07 Score=73.23 Aligned_cols=69 Identities=9% Similarity=0.071 Sum_probs=52.6
Q ss_pred CCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 145 KIDSLE--INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 145 ~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
+|++.. .++|.++...|++++|+..|++++..+|++..+++++|.+|...|++++|+..|++++.+.+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 344444 666666666677777777777777777888889999999999999999999999999988754
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.58 E-value=7.7e-07 Score=75.30 Aligned_cols=112 Identities=12% Similarity=0.008 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHH----hcCHHHHHHHH
Q 005990 129 GEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAE----MNKYTEAEQLL 204 (666)
Q Consensus 129 g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l 204 (666)
+++++|+.+|+++.+...... . ++.+|...+.+++|+..|+++... .+..+++++|.+|.. .+++++|+.+|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a-~-lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFG-C-LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH-H-HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhh-h-HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 467889999999887653333 3 888888888888899999988776 578899999999998 89999999999
Q ss_pred HHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC
Q 005990 205 LTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQL----LGNTQEAFGAYTDIIKRNL 261 (666)
Q Consensus 205 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~~l~~~~ 261 (666)
+++.+... ..+++.||.+|.. .+++++|+.+|+++.+...
T Consensus 85 ~~Aa~~g~-----------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 85 SKACGLND-----------------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHTTC-----------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCC-----------------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99988752 2588999999999 8999999999999987643
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.55 E-value=1e-07 Score=75.38 Aligned_cols=90 Identities=10% Similarity=0.184 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCCChHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKATSSFE-LAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIEL 229 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 229 (666)
++.+.++...|++++|+..|++++..+|++.. +++++|.++...|++++|+..|++++.++|...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-------------- 69 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP-------------- 69 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH--------------
Confidence 35566777777888888888888888888887 888888888888888888888888888875421
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 005990 230 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLAD 263 (666)
Q Consensus 230 ~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~ 263 (666)
.++.. +.+.+++..|++++..+|++
T Consensus 70 -~~~~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 70 -ALQAR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -HHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred -HHHHH--------HHHHHHHHHHHHHhccCccc
Confidence 22211 55667777777766665544
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.52 E-value=2.8e-06 Score=78.91 Aligned_cols=179 Identities=12% Similarity=0.011 Sum_probs=126.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---------------------CHHHHHHHHHhhhccchhhhHH--H
Q 005990 35 EFEQAVKVADQVLSTNPSDEDAMRCKVVALIKAD---------------------NIDDALSTIQSSQKFTFDFNYL--K 91 (666)
Q Consensus 35 ~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g---------------------~~~~A~~~~~~~~~~~~~~~~~--~ 91 (666)
-..-.+.+++-++..+|+|...+...+..|..-+ .+..|..++.++.......... .
T Consensus 47 ~~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~ 126 (301)
T 3u64_A 47 SLPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYP 126 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred hccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3556788889999999999766665554443321 2445566666652221111110 1
Q ss_pred HHH-HHHhCCHHHHHHHHHh-cCCChhHHHHHHHHHHH---c--C------CHHHHHHHHHHHHhhCCChhH----HHHH
Q 005990 92 AYC-LYRQNRLDEALESLKI-QENNPATMLLKSQILYR---S--G------EMDACVEFYQKLQKSKIDSLE----INFV 154 (666)
Q Consensus 92 a~~-~~~~g~~~~A~~~l~~-~~~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~~l~~~p~~~~----~~l~ 154 (666)
+.| -.+.++..+-.+.+.. .++++..+++.|.+... . | ....|...++++++++|.... ..++
T Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG 206 (301)
T 3u64_A 127 GFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLT 206 (301)
T ss_dssp THHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred cHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHH
Confidence 122 3345554444445544 45677777777776643 1 3 256889999999999999554 8888
Q ss_pred HHHHHc-----CChhHHHHHHHHhhhcCCCh-HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhhhh
Q 005990 155 AGLISA-----GRASEVQKTLDSLRVKATSS-FELAYNTACSLAEM-NKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 155 ~~~~~~-----g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~-g~~~~A~~~l~~a~~~~~~ 213 (666)
.+|... |+.++|..+|++++.++|+. .+.++..|..++.. |++++|..+|++++...+.
T Consensus 207 ~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 207 KFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 888884 99999999999999999975 99999999999884 9999999999999999865
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.51 E-value=4.6e-06 Score=81.04 Aligned_cols=146 Identities=15% Similarity=0.037 Sum_probs=106.6
Q ss_pred HHHHHHHhcCCChhHH--HHHHHHHHHcCC---HHHHHHHHHHHHhhCCChhH--HHHHHHHHH---cC-ChhHHHH---
Q 005990 103 EALESLKIQENNPATM--LLKSQILYRSGE---MDACVEFYQKLQKSKIDSLE--INFVAGLIS---AG-RASEVQK--- 168 (666)
Q Consensus 103 ~A~~~l~~~~~~~~~~--~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~---~g-~~~~A~~--- 168 (666)
+........|.+..+| ++.|..++..+. +.+|+.+|+++++.+|+... ..++.++.. .+ .......
T Consensus 182 e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~ 261 (372)
T 3ly7_A 182 MQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALN 261 (372)
T ss_dssp HHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHH
Confidence 3334445566665554 566777766554 47899999999999999876 333333322 11 1111111
Q ss_pred -HHHH--hhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCC
Q 005990 169 -TLDS--LRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGN 245 (666)
Q Consensus 169 -~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 245 (666)
.+.. .+..+|.++.++..++..++..|++++|+..+++|+.+++. ...+..+|.++...|+
T Consensus 262 ~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s----------------~~a~~llG~~~~~~G~ 325 (372)
T 3ly7_A 262 TEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS----------------WLNYVLLGKVYEMKGM 325 (372)
T ss_dssp HHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHHCCC
Confidence 2222 23466888989999999999999999999999999999843 1477899999999999
Q ss_pred hHHHHHHHHHHHhhCCCCH
Q 005990 246 TQEAFGAYTDIIKRNLADE 264 (666)
Q Consensus 246 ~~eA~~~~~~~l~~~~~~~ 264 (666)
+++|++.|.+++.++|...
T Consensus 326 ~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 326 NREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHHHHhcCCCcC
Confidence 9999999999999999775
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.49 E-value=2.4e-07 Score=73.20 Aligned_cols=63 Identities=22% Similarity=0.294 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHhhhccch
Q 005990 23 LFTSLNRHIERSEFEQAVKVADQVLSTNPSDED-AMRCKVVALIKADNIDDALSTIQSSQKFTF 85 (666)
Q Consensus 23 l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 85 (666)
.+..+..++..|++++|+..++++++.+|++.. +++.+|.++...|++++|+..|+++....+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 367888889999999999999999999999998 999999999999999999999999865544
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.43 E-value=2e-06 Score=72.69 Aligned_cols=107 Identities=8% Similarity=-0.078 Sum_probs=80.9
Q ss_pred HHHHHHHHHhc--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHH----cCChhHHHHHHHHhh
Q 005990 101 LDEALESLKIQ--ENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLIS----AGRASEVQKTLDSLR 174 (666)
Q Consensus 101 ~~~A~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 174 (666)
+++|+..+++. ..++.+. +|.+|...+.+++|+.+|+++.+........+++.+|.. .+++++|+..|+++.
T Consensus 11 ~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 88 (138)
T 1klx_A 11 LKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC 88 (138)
T ss_dssp HHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 44555555441 1244444 888888778888888888888776322222888888887 788888888888887
Q ss_pred hcCCChHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhh
Q 005990 175 VKATSSFELAYNTACSLAE----MNKYTEAEQLLLTARRIG 211 (666)
Q Consensus 175 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~~ 211 (666)
+. .+..+++++|.+|.. .+++++|+.+|+++.+..
T Consensus 89 ~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 89 GL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 65 568899999999999 899999999999998886
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.39 E-value=1.3e-06 Score=88.88 Aligned_cols=93 Identities=13% Similarity=0.042 Sum_probs=79.7
Q ss_pred cCChhHHHHHHHHhhhc--------CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhh
Q 005990 160 AGRASEVQKTLDSLRVK--------ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAP 231 (666)
Q Consensus 160 ~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 231 (666)
.|++++|+..+++++.. +|.....+.++|.+|..+|+|++|+.++++++.+....++.+. ++++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H-------p~~a~ 383 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS-------LNVAS 383 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC-------HHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC-------hHHHH
Confidence 57889999999888762 3445677899999999999999999999999999877665332 67788
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005990 232 IAVQLAYVQQLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 232 ~~~~la~~~~~~g~~~eA~~~~~~~l~~ 259 (666)
.+++||.+|..+|++++|+.+|++++.+
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999864
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.37 E-value=8.2e-06 Score=79.30 Aligned_cols=142 Identities=11% Similarity=0.054 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhhh---ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHH
Q 005990 20 IEDLFTSLNRHIER---SEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLY 96 (666)
Q Consensus 20 ~~~l~~~~~~~~~~---~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~ 96 (666)
...++-++..++.. .++.+|+.+|+++++.+|++..++..++.||+.. .... ..... ...
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-------~~~~---~~~~~-~~~------ 258 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-------HSQH---PLDEK-QLA------ 258 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------HHHS---CCCHH-HHH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------hccC---CCchh-hHH------
Confidence 44566667776554 4568999999999999999999999999888711 1000 00000 000
Q ss_pred HhCCHHHHHH---HHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-HHHHHHHHHcCChhHHHHHHHH
Q 005990 97 RQNRLDEALE---SLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-INFVAGLISAGRASEVQKTLDS 172 (666)
Q Consensus 97 ~~g~~~~A~~---~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~ 172 (666)
....++. .+...+.++.++..++.++...|++++|+..+++++..+|+... ..+|.++...|++++|++.|++
T Consensus 259 ---~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 259 ---ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp ---HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0112222 22335678888888888888889999999999999988876444 6778888889999999999999
Q ss_pred hhhcCCChH
Q 005990 173 LRVKATSSF 181 (666)
Q Consensus 173 ~~~~~~~~~ 181 (666)
++.++|...
T Consensus 336 AlrL~P~~~ 344 (372)
T 3ly7_A 336 AFNLRPGAN 344 (372)
T ss_dssp HHHHSCSHH
T ss_pred HHhcCCCcC
Confidence 999888765
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.34 E-value=6e-06 Score=84.21 Aligned_cols=114 Identities=11% Similarity=-0.074 Sum_probs=91.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh-----CCChhH-----HHHHHHHHHcCChhHHHHHHHHhhh--------cCCChHHH
Q 005990 122 SQILYRSGEMDACVEFYQKLQKS-----KIDSLE-----INFVAGLISAGRASEVQKTLDSLRV--------KATSSFEL 183 (666)
Q Consensus 122 a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~ 183 (666)
..-+...|+|++|+..|++++.. .+++.. .+++.+|...|+|++|+.++++++. .+|+....
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34457889999999999999863 455554 8899999999999999999999875 33556677
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHH
Q 005990 184 AYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQL 242 (666)
Q Consensus 184 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 242 (666)
++++|.+|..+|++++|+.+|++|+.+....++.+. +....+...|+.+...
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H-------p~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH-------SLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999877665332 4445566666666543
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.30 E-value=4.5e-06 Score=84.91 Aligned_cols=92 Identities=8% Similarity=-0.075 Sum_probs=78.9
Q ss_pred HHcCCHHHHHHHHHHHHhh-----CCChhH-----HHHHHHHHHcCChhHHHHHHHHhhh--------cCCChHHHHHHH
Q 005990 126 YRSGEMDACVEFYQKLQKS-----KIDSLE-----INFVAGLISAGRASEVQKTLDSLRV--------KATSSFELAYNT 187 (666)
Q Consensus 126 ~~~g~~~~A~~~~~~~l~~-----~p~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l 187 (666)
...|+|++|+.+|++++.. .|+++. .+++.+|..+|+|++|+.++++++. .+|+....++++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3468899999999999873 566655 8899999999999999999999876 245666789999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhhhhccC
Q 005990 188 ACSLAEMNKYTEAEQLLLTARRIGQETLTD 217 (666)
Q Consensus 188 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~ 217 (666)
|.+|..+|+|++|+.+|++|+.+....++.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~ 418 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGK 418 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999998776653
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.29 E-value=9.1e-06 Score=82.87 Aligned_cols=99 Identities=7% Similarity=-0.076 Sum_probs=83.9
Q ss_pred HHHHHHcCChhHHHHHHHHhhhc--------CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhH
Q 005990 154 VAGLISAGRASEVQKTLDSLRVK--------ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDI 225 (666)
Q Consensus 154 ~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 225 (666)
..-+...|++++|+..+++++.. +|....++.++|.+|..+|+|++|+.++++++.+....++.+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~------- 366 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS------- 366 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-------
Confidence 34456789999999999998763 344567889999999999999999999999999987665432
Q ss_pred hhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005990 226 EIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 226 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~ 259 (666)
.++++..+++||.+|..+|++++|+.+|++++.+
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2677889999999999999999999999999864
No 216
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.25 E-value=4.8e-06 Score=69.92 Aligned_cols=107 Identities=10% Similarity=0.139 Sum_probs=82.6
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHhhhccc-----
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSD---------EDAMRCKVVALIKADNIDDALSTIQSSQKFT----- 84 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---------~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~----- 84 (666)
+.-.++..+..++..+.|+.|+-+.+.++....++ ..++..+|.+++..++|..|...|+++....
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 44578999999999999999999999987764333 3488999999999999999999999972210
Q ss_pred -----------------------hhhhHHHHHHHHHhCCHHHHHHHHHhcCC---ChhHHHHHHHHH
Q 005990 85 -----------------------FDFNYLKAYCLYRQNRLDEALESLKIQEN---NPATMLLKSQIL 125 (666)
Q Consensus 85 -----------------------~~~~~~~a~~~~~~g~~~~A~~~l~~~~~---~~~~~~~la~~~ 125 (666)
.++.|..+.||..++++++|+.+++..|. .+.+...||.+|
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 14667778888888888888888877654 666777777664
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.25 E-value=4.6e-06 Score=64.43 Aligned_cols=71 Identities=11% Similarity=0.015 Sum_probs=63.5
Q ss_pred CCCcHHHHHHHHHHHhhhcc---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchh
Q 005990 16 PPPPIEDLFTSLNRHIERSE---FEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFD 86 (666)
Q Consensus 16 ~p~~~~~l~~~~~~~~~~~~---~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 86 (666)
+|.++..++..+..++..++ .++|...++++|+.+|+++.+++.+|..+++.|+|++|+..++++....+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57888999999999865555 799999999999999999999999999999999999999999999666543
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.23 E-value=7.8e-06 Score=63.14 Aligned_cols=73 Identities=16% Similarity=0.069 Sum_probs=63.5
Q ss_pred CCChHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHH
Q 005990 177 ATSSFELAYNTACSLAEMNK---YTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAY 253 (666)
Q Consensus 177 ~~~~~~~~~~la~~~~~~g~---~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~ 253 (666)
+|+++++++.+|.+++..++ .++|..+|++++.++|.. ..+++.+|.+++..|+|++|+.+|
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~---------------~rA~~~lg~~~~~~g~y~~Ai~~w 66 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN---------------EAALSLIANDHFISFRFQEAIDTW 66 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC---------------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 57889999999999977666 799999999999999543 368999999999999999999999
Q ss_pred HHHHhhCCCCH
Q 005990 254 TDIIKRNLADE 264 (666)
Q Consensus 254 ~~~l~~~~~~~ 264 (666)
++++..+|.++
T Consensus 67 ~~~l~~~p~~~ 77 (93)
T 3bee_A 67 VLLLDSNDPNL 77 (93)
T ss_dssp HHHHTCCCTTC
T ss_pred HHHHhhCCCCc
Confidence 99999988743
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.20 E-value=7.4e-06 Score=65.13 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005990 180 SFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 180 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~ 259 (666)
+++-++.+|..++..|+|..|+..|+.|+...+.... .......++..+|.++..+|++++|+.++++++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~--------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI--------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC--------CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4667899999999999999999999999998643210 00123468999999999999999999999999999
Q ss_pred CCCCHh
Q 005990 260 NLADES 265 (666)
Q Consensus 260 ~~~~~~ 265 (666)
.|++..
T Consensus 76 ~P~~~~ 81 (104)
T 2v5f_A 76 DPEHQR 81 (104)
T ss_dssp CTTCHH
T ss_pred CCCCHH
Confidence 999864
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.16 E-value=3.3e-05 Score=71.83 Aligned_cols=84 Identities=11% Similarity=0.034 Sum_probs=64.6
Q ss_pred hhHHHHHHhcCcCCCCC---hhHHHHHHHHHHHc-----CChhHHHHHHHHHHHHHHHh-ccCcchHHHHHHHHHHHHHh
Q 005990 402 PFIAAESLAKIPDIQHM---PATVATLVALKERA-----GDIDGAAAVLDSAIKWWLNA-MTEDNKLSVIMQEAASFKLR 472 (666)
Q Consensus 402 ~~~A~~~l~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 472 (666)
...|...++++++++|+ ...+..+|.+|... |+.++|..+|++|+++.|+. .. .+...|.+++.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id-------~~v~YA~~l~~ 251 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPD-------HHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSH-------HHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCch-------HHHHHHHHHHH
Confidence 35677788888888883 55678888888884 89999999999999887543 22 45566888877
Q ss_pred -CCChhhHHHHHHHHHHhcCC
Q 005990 473 -HGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 473 -~g~~~~A~~~~~~~l~~~p~ 492 (666)
.|++++|..++++++...|.
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGG
T ss_pred hcCCHHHHHHHHHHHHcCCCC
Confidence 48899999999999987765
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.16 E-value=2.6e-05 Score=65.18 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=73.4
Q ss_pred hHHHHHHHHhhhcCCChHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhh-hhhccCCCCChhhHhhhhhhHHHHHHHH
Q 005990 164 SEVQKTLDSLRVKATSSFELAYNTACSLAEMN---KYTEAEQLLLTARRIG-QETLTDDNFAEDDIEIELAPIAVQLAYV 239 (666)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~l~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~ 239 (666)
..+...|.+.+..++.+.++.|++|++++..+ ++++++.+|+..+... |. .-...++.||..
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~--------------~~rd~lY~LAv~ 80 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--------------EQRDYVFYLAVG 80 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--------------chHHHHHHHHHH
Confidence 45566677777777888999999999999988 7779999999999876 31 112588999999
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHh
Q 005990 240 QQLLGNTQEAFGAYTDIIKRNLADES 265 (666)
Q Consensus 240 ~~~~g~~~eA~~~~~~~l~~~~~~~~ 265 (666)
+.++|+|++|+.+++.+++.+|.+..
T Consensus 81 ~~kl~~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 81 NYRLKEYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 99999999999999999999998863
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.08 E-value=4.6e-05 Score=60.44 Aligned_cols=77 Identities=9% Similarity=0.030 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCChHH
Q 005990 419 PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEA 495 (666)
Q Consensus 419 ~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 495 (666)
+.-.+.+|..+...|++..|+..|+.|+...+...........++..+|.++.+.|+++.|+..++++++.+|++..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 44567899999999999999999999999876543223455678899999999999999999999999999999533
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.04 E-value=2e-05 Score=65.93 Aligned_cols=83 Identities=11% Similarity=0.075 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhhCCChhH--HHHHHHHHHcC---ChhHHHHHHHHhhhcC-C-ChHHHHHHHHHHHHHhcCHHHHHHH
Q 005990 131 MDACVEFYQKLQKSKIDSLE--INFVAGLISAG---RASEVQKTLDSLRVKA-T-SSFELAYNTACSLAEMNKYTEAEQL 203 (666)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~ 203 (666)
...+.+.|.+.+..++.+.+ ++++.+++..+ ++.+++.+|+.++..+ | +..+.+|++|..++..|+|++|..+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34566777777776665555 89999999987 6679999999999887 6 5789999999999999999999999
Q ss_pred HHHHHHhhhh
Q 005990 204 LLTARRIGQE 213 (666)
Q Consensus 204 l~~a~~~~~~ 213 (666)
+++++++.|.
T Consensus 94 ~~~lL~ieP~ 103 (152)
T 1pc2_A 94 VRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHhcCCC
Confidence 9999999964
No 224
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.76 E-value=0.00014 Score=61.15 Aligned_cols=110 Identities=17% Similarity=0.106 Sum_probs=85.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHhcccc---CCCC------chHHHHHHHHHHhhCChhHHHHHHHHHHhhC------CC--
Q 005990 321 ANRVLLLLHANKMDQARELVAALPDM---FPDS------VMPLLLQAAVLVRENKAGKAEELLGQFAEKL------PD-- 383 (666)
Q Consensus 321 ~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~------p~-- 383 (666)
+.....++..+.|+.|+-+...++.. +|+- ..+++..|.+++..++|..|...|++++... +.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 34466678899999998877765544 2331 1467888999999999999999999986532 10
Q ss_pred ----------------hhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCCChhHHHHHHHHHH
Q 005990 384 ----------------KSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKE 430 (666)
Q Consensus 384 ----------------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~ 430 (666)
.+.++.+.++.||...+++++|+.+++.+......|.+...||.+|.
T Consensus 104 ~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 104 PSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp -------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred ccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHhc
Confidence 12357889999999999999999999998766668889999998873
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.44 E-value=0.0014 Score=52.50 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=68.3
Q ss_pred hHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHH
Q 005990 164 SEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTE---AEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQ 240 (666)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 240 (666)
..+...|......++.+.++.|++|++++...+... ++.+|+..+.... |+ .--...+.||..+
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~---------p~----~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS---------KE----EQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC---------HH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC---------cc----hHHHHHHHHHHHH
Confidence 345556666666667788899999999999887766 8888887766541 11 1125889999999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHh
Q 005990 241 QLLGNTQEAFGAYTDIIKRNLADES 265 (666)
Q Consensus 241 ~~~g~~~eA~~~~~~~l~~~~~~~~ 265 (666)
++.|+|++|+.+++.+++..|.+..
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999998864
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.44 E-value=0.0028 Score=51.90 Aligned_cols=125 Identities=16% Similarity=0.143 Sum_probs=86.2
Q ss_pred cCCChhHHHHHHHHHHHcCCH------HHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHH
Q 005990 111 QENNPATMLLKSQILYRSGEM------DACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFELA 184 (666)
Q Consensus 111 ~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 184 (666)
.|.++..|.......-..|+. +.-+++|++++..-|.... +.+ ....-+|
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~----------~~w--------------rrYI~LW 64 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKY----------GQN--------------ESFARIQ 64 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGG----------TTC--------------HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcccc----------ccH--------------HHHHHHH
Confidence 355666666666666666666 5666666666554333211 000 0112244
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 005990 185 YNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADE 264 (666)
Q Consensus 185 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~ 264 (666)
...|.. ...++.++|.+.|+.++.++. .++.+|...|....++|+...|.+++.+++...|.+.
T Consensus 65 IrYA~~-~ei~D~d~aR~vy~~a~~~hK---------------kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 65 VRFAEL-KAIQEPDDARDYFQMARANCK---------------KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHHHH-HHHHCGGGCHHHHHHHHHHCT---------------TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHHH-HHhcCHHHHHHHHHHHHHHhH---------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 555544 456899999999999999853 2467999999999999999999999999999999888
Q ss_pred hHHHHHHhhhh
Q 005990 265 SSFAVAVNNLV 275 (666)
Q Consensus 265 ~~~~~~~~~l~ 275 (666)
..+..+..|+-
T Consensus 129 ~~le~a~~nl~ 139 (161)
T 4h7y_A 129 EMLEIALRNLN 139 (161)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 77777666654
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.42 E-value=0.0039 Score=51.10 Aligned_cols=55 Identities=13% Similarity=0.052 Sum_probs=45.5
Q ss_pred HcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 159 SAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
..++.++|..+|+.++..+..-.-+|...|...+++|+...|.+.+.+|+.+++.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3467777788887776666666778889999999999999999999999999965
No 228
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.39 E-value=0.034 Score=55.04 Aligned_cols=161 Identities=15% Similarity=0.098 Sum_probs=101.9
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHhhC-----CChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCC----CChhH----H
Q 005990 356 LQAAVLVRENKAGKAEELLGQFAEKL-----PDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ----HMPAT----V 422 (666)
Q Consensus 356 ~~a~~~~~~g~~~~A~~~l~~~~~~~-----p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~----~~~~~----~ 422 (666)
.++.+|+..|+|.+|..++.++.... +....+++....++|...+|+.++...+.++.... ++|.+ .
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 56778888888888888887776642 22345567777888888889888888887774322 23332 3
Q ss_pred HHHHHHHH-HcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHH-HH-HH-hcCChHHHHH
Q 005990 423 ATLVALKE-RAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFE-EL-VK-THGSIEALVG 498 (666)
Q Consensus 423 ~~l~~~~~-~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~-l~-~~p~~~~l~~ 498 (666)
..-|.++. ..++|..|...|-+++..+... ..+....++..++-+.+..++..+-...+. .. .. .+|+...+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~--~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSV--DSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhccccc--ccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHH
Confidence 44566677 7899999998888887665322 123333455556666666666544433222 11 11 2355556677
Q ss_pred HHHhhccCChhhHHHHHhcC
Q 005990 499 LVTTSAHVDVDKAESYEKRL 518 (666)
Q Consensus 499 l~~~~~~~d~~~a~~~~~~l 518 (666)
++.++...|+......+...
T Consensus 262 L~~a~~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 262 VAEASHKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 88888888887666655543
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.25 E-value=0.00086 Score=53.80 Aligned_cols=87 Identities=11% Similarity=-0.080 Sum_probs=62.1
Q ss_pred HHHHHHhccccCCCCchHHHHHHHHHHhhCChhH---HHHHHHHHHhhC-CChhHHHHHHHHHHHHHcCChhHHHHHHhc
Q 005990 336 ARELVAALPDMFPDSVMPLLLQAAVLVRENKAGK---AEELLGQFAEKL-PDKSKIILLARAQVAAAANHPFIAAESLAK 411 (666)
Q Consensus 336 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~---A~~~l~~~~~~~-p~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 411 (666)
+...+.......+.+..+.+.+|.++.+..+... ++.+|+.++... |.....+++.+|..+.+.|+|++|..+++.
T Consensus 20 ~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~ 99 (126)
T 1nzn_A 20 FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 99 (126)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3334444434445566777888888887776555 888888888776 545566888888888888888888888888
Q ss_pred CcCCCC-ChhHH
Q 005990 412 IPDIQH-MPATV 422 (666)
Q Consensus 412 ~~~~~~-~~~~~ 422 (666)
+++..| +....
T Consensus 100 lL~~eP~n~QA~ 111 (126)
T 1nzn_A 100 LLQTEPQNNQAK 111 (126)
T ss_dssp HHHHCTTCHHHH
T ss_pred HHHhCCCCHHHH
Confidence 888888 55544
No 230
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.16 E-value=0.43 Score=52.43 Aligned_cols=95 Identities=11% Similarity=-0.005 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhh-CCChhHHHHHHHHHHHH
Q 005990 319 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK-LPDKSKIILLARAQVAA 397 (666)
Q Consensus 319 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~-~p~~~~~~~~~la~~~~ 397 (666)
..+.++.+++-.|+-+....++..+.....++..-...+|..+...|+.+.+..+++.+... +|.......+.++..|.
T Consensus 492 AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAya 571 (963)
T 4ady_A 492 AALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYA 571 (963)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 34455666777777766666666554433222233344444455667776666666554432 22222233445566677
Q ss_pred HcCChhHHHHHHhcCc
Q 005990 398 AANHPFIAAESLAKIP 413 (666)
Q Consensus 398 ~~g~~~~A~~~l~~~~ 413 (666)
..|+...-..+|..+.
T Consensus 572 GTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 572 GTGNNSAVKRLLHVAV 587 (963)
T ss_dssp TSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc
Confidence 7787655444666554
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.13 E-value=0.026 Score=63.08 Aligned_cols=100 Identities=14% Similarity=0.128 Sum_probs=73.1
Q ss_pred HHHhhhccHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHH
Q 005990 28 NRHIERSEFEQAVK-VADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALE 106 (666)
Q Consensus 28 ~~~~~~~~~~~A~~-~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 106 (666)
......+++++|.. ++ ..-| +...+...+..+...|.+++|+...+.. ...| .....+|++++|.+
T Consensus 607 ~~~~~~~~~~~a~~~~l----~~i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~-----~~~f---~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVL----PNVE-GKDSLTKIARFLEGQEYYEEALNISPDQ-----DQKF---ELALKVGQLTLARD 673 (814)
T ss_dssp HHHHHTTCHHHHHHHTG----GGCC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH-----HHHH---HHHHHHTCHHHHHH
T ss_pred hHHHHhCCHHHHHHHHH----hcCC-chHHHHHHHHHHHhCCChHHheecCCCc-----chhe---ehhhhcCCHHHHHH
Confidence 34456889998876 44 1112 0223366667788899999999876532 2223 34567899999999
Q ss_pred HHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005990 107 SLKIQENNPATMLLKSQILYRSGEMDACVEFYQKL 141 (666)
Q Consensus 107 ~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 141 (666)
+.+.. ++...|..+|+.+...|+++.|+.+|.++
T Consensus 674 ~~~~~-~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 674 LLTDE-SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhh-CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 98654 46789999999999999999999999875
No 232
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.07 E-value=0.28 Score=48.54 Aligned_cols=65 Identities=22% Similarity=0.080 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005990 185 YNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 185 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~ 258 (666)
..+|.+|+..|+|.+|..++.+...-+... ++ ...+..++.....+|...|++.++...|.++..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--------dd-~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKL--------DD-KNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--------SC-THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--------cc-chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 478999999999999999999999988541 11 145667888899999999999999999998864
No 233
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.87 E-value=0.62 Score=49.31 Aligned_cols=315 Identities=11% Similarity=0.058 Sum_probs=162.1
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHhhhccch--hhhHHHHHHHH
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKAD--NIDDALSTIQSSQKFTF--DFNYLKAYCLY 96 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g--~~~~A~~~~~~~~~~~~--~~~~~~a~~~~ 96 (666)
...|..+...++.|++..+..+...+ .-+|-. .+...-.....++ ...+...++.+-..... .+.......+.
T Consensus 7 ~~~~~~a~~a~~~~~~~~~~~l~~~l-~~~pL~--~yl~y~~l~~~l~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 7 RSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPLY--PYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTTH--HHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhh-cCCCcH--HHHHHHHHHhCcccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHH
Confidence 46688888899999998777765542 334432 2222222222223 57777777776533321 22233445566
Q ss_pred HhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CChhHHHHHHHHHH--------------
Q 005990 97 RQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSK---IDSLEINFVAGLIS-------------- 159 (666)
Q Consensus 97 ~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~l~~~~~~-------------- 159 (666)
+.+++...+..+...|.+.......+...+..|+-.+|....+.+-... |+..+ .+...+..
T Consensus 84 ~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~-~l~~~~~~~g~lt~~~~~~R~~ 162 (618)
T 1qsa_A 84 RREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACD-KLFSVWRASGKQDPLAYLERIR 162 (618)
T ss_dssp HTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHH-HHHHHHHHTTCSCHHHHHHHHH
T ss_pred hCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHH-HHHHHHHHCCCCCHHHHHHHHH
Confidence 6888998888777667777777888888889999888888777775432 33222 22222222
Q ss_pred ----cCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHH
Q 005990 160 ----AGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQ 235 (666)
Q Consensus 160 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (666)
.|+...|..+...+ .++ ...+.. +.+-+. .+.......... .. +... ..-.+.
T Consensus 163 ~al~~~~~~~a~~l~~~l---~~~-~~~~a~-~~~al~-~~p~~~~~~~~~---~~----------~~~~----~~~~~~ 219 (618)
T 1qsa_A 163 LAMKAGNTGLVTVLAGQM---PAD-YQTIAS-AIISLA-NNPNTVLTFART---TG----------ATDF----TRQMAA 219 (618)
T ss_dssp HHHHTTCHHHHHHHHHTC---CGG-GHHHHH-HHHHHH-HCGGGHHHHHHH---SC----------CCHH----HHHHHH
T ss_pred HHHHCCCHHHHHHHHHhC---CHH-HHHHHH-HHHHHH-hChHhHHHHHhc---cC----------CChh----hHHHHH
Confidence 23333222222111 011 100000 000000 000011100000 00 1111 112333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhh-hccCCCChhHHHHHhHHHhhhhhhhhhhhHHhhcCCCHH
Q 005990 236 LAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLV-ALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPK 314 (666)
Q Consensus 236 la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~-~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 314 (666)
++.......+.+.|...+........-+..........+. ..........+...+.... .......
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 286 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI-------------MRSQSTS 286 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH-------------HTCCCHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc-------------ccCCChH
Confidence 3444445558888888888776543333332222222221 1111110112333332211 1111111
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHh
Q 005990 315 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAE 379 (666)
Q Consensus 315 q~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~ 379 (666)
. . .-.+...+..|++..|...|..+...........+.+|.++...|+.++|..+|+.+..
T Consensus 287 ~-~---e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 287 L-I---ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp H-H---HHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred H-H---HHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 1 1 11233445679999999999988765445567788999999999999999999999875
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.71 E-value=0.081 Score=59.05 Aligned_cols=96 Identities=11% Similarity=0.061 Sum_probs=49.3
Q ss_pred HhCCHHHHHH-HHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhh
Q 005990 97 RQNRLDEALE-SLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRV 175 (666)
Q Consensus 97 ~~g~~~~A~~-~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 175 (666)
..+++++|.+ ++...++ .......+..+...|.+++|+...+. . . .........|++++|.++.+.+
T Consensus 611 ~~~~~~~a~~~~l~~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~~-------~-~-~~f~~~l~~~~~~~A~~~~~~~-- 678 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVEG-KDSLTKIARFLEGQEYYEEALNISPD-------Q-D-QKFELALKVGQLTLARDLLTDE-- 678 (814)
T ss_dssp HTTCHHHHHHHTGGGCCC-HHHHHHHHHHHHHTTCHHHHHHHCCC-------H-H-HHHHHHHHHTCHHHHHHHHTTC--
T ss_pred HhCCHHHHHHHHHhcCCc-hHHHHHHHHHHHhCCChHHheecCCC-------c-c-hheehhhhcCCHHHHHHHHHhh--
Confidence 4556666655 4432220 11224455555566666665544421 1 1 1111234456666666654322
Q ss_pred cCCChHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 005990 176 KATSSFELAYNTACSLAEMNKYTEAEQLLLTA 207 (666)
Q Consensus 176 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 207 (666)
++...|..+|..+...|+++.|+.+|.++
T Consensus 679 ---~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 679 ---SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34556667777777777777777666654
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.70 E-value=6.2e-06 Score=81.30 Aligned_cols=173 Identities=16% Similarity=0.098 Sum_probs=89.6
Q ss_pred HHHcCCHHHHHHHHHhhhcc--chhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005990 64 LIKADNIDDALSTIQSSQKF--TFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKL 141 (666)
Q Consensus 64 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 141 (666)
..+.|+|++=+.++..+.+. .+.+-.++++||.+++++.+-.+++.. | +..-....|.-++..|.|+.|.-+|..+
T Consensus 93 A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~~-~-N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 93 ANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING-P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp TTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTSC-C-SSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHcC-C-CcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 33444444444444444221 233444556666666665544333321 1 2222345566666666666665555432
Q ss_pred HhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCC
Q 005990 142 QKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFA 221 (666)
Q Consensus 142 l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 221 (666)
++. ..|+.++...|+|..|.+.-+++ ++..+|-....+++..++|.-|..+--..+-..
T Consensus 171 ----sN~--akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIvha---------- 229 (624)
T 3lvg_A 171 ----SNF--GRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---------- 229 (624)
T ss_dssp ----CCC--TTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS----------
T ss_pred ----ccH--HHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcccH----------
Confidence 110 23344455566666665433332 334455566667777777776655533332211
Q ss_pred hhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHH
Q 005990 222 EDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA 268 (666)
Q Consensus 222 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~ 268 (666)
++. -.+...|...|.|+|-+.+++..+.+.......+.
T Consensus 230 -deL--------~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFT 267 (624)
T 3lvg_A 230 -DEL--------EELINYYQDRGYFEELITMLEAALGLERAHMGMFT 267 (624)
T ss_dssp -SCC--------SGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHH
T ss_pred -HHH--------HHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHH
Confidence 111 12234577889999999999999877666655443
No 236
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.67 E-value=0.2 Score=41.70 Aligned_cols=161 Identities=10% Similarity=0.088 Sum_probs=101.7
Q ss_pred HHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhh----C-------------CChhH
Q 005990 324 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK----L-------------PDKSK 386 (666)
Q Consensus 324 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~----~-------------p~~~~ 386 (666)
..++...|.|..|.-.+... +.....+..+.++...+++..|+..++.++.. + |.+..
T Consensus 40 ~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkE 114 (242)
T 3kae_A 40 SIVLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEE 114 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHH
T ss_pred hhhhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHH
Confidence 56678899999998887654 33466777888889999999999999999832 2 33445
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhHHHHHHHH----------HHHcCChhHHHHHHHHHHH--------
Q 005990 387 IILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVAL----------KERAGDIDGAAAVLDSAIK-------- 447 (666)
Q Consensus 387 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l~~~----------~~~~g~~~~A~~~l~~a~~-------- 447 (666)
..+..+|.++...|+.++|+..+.......+ -+.+-..+..- -...|+-.--.+.+....+
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~ 194 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPS 194 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHH
Confidence 5677888999999999999999887655444 11111111000 0011111111222322222
Q ss_pred ---HHHHhccCcchHH-HHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC
Q 005990 448 ---WWLNAMTEDNKLS-VIMQEAASFKLRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 448 ---~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
.+.+.. +... .+....+..++..|-.++...+|..+.+.+|.
T Consensus 195 ~ikkY~n~i---PGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 195 LVKKYMEHV---PGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHTST---TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhC---CCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 222221 1111 23345677889999999999999999999884
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.55 E-value=0.036 Score=44.53 Aligned_cols=75 Identities=12% Similarity=0.071 Sum_probs=61.3
Q ss_pred CCChHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHH
Q 005990 177 ATSSFELAYNTACSLAEMNKY---TEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAY 253 (666)
Q Consensus 177 ~~~~~~~~~~la~~~~~~g~~---~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~ 253 (666)
..-+..+.|++|++++...+. .+++.+|+..+...+. . -...++.||..+.++|+|++|+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~----------~----~Rd~LYyLAvg~yklgdY~~Ar~y~ 101 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES----------R----RRECLYYLTIGCYKLGEYSMAKRYV 101 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG----------G----HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc----------h----hHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 334678999999999988755 4688888888876632 1 1258899999999999999999999
Q ss_pred HHHHhhCCCCHh
Q 005990 254 TDIIKRNLADES 265 (666)
Q Consensus 254 ~~~l~~~~~~~~ 265 (666)
+.+++..|.+..
T Consensus 102 d~lL~~eP~N~Q 113 (134)
T 3o48_A 102 DTLFEHERNNKQ 113 (134)
T ss_dssp HHHHTTCTTCHH
T ss_pred HHHHhhCCCCHH
Confidence 999999998864
No 238
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.43 E-value=0.33 Score=40.48 Aligned_cols=185 Identities=14% Similarity=0.140 Sum_probs=119.3
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHH
Q 005990 23 LFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLD 102 (666)
Q Consensus 23 l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 102 (666)
+...+...++-.+|+.++-+..-.+. ..++-...++.+++-.|.|..|+-++.... .....+-.+.||.++.++.
T Consensus 5 ~~~kI~Ks~kY~dYdt~~fLsa~L~~---~~~eY~lL~~I~LyyngEY~R~Lf~L~~lN--T~Ts~YYk~LCy~klKdYk 79 (242)
T 3kae_A 5 LIGKICKSIRYRDYETAIFLAACLLP---CKPEYRMLMSIVLYLNGEYTRALFHLHKLN--TCTSKYYESLCYKKKKDYK 79 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC-------CTHHHHHHHHHHTTCHHHHHHHHHTCC--BHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHcc---CChHHHhhhhhhhhhcchHhHHHHHHHhcc--hHHHHHHHHHHHHHHHHHH
Confidence 34455566777899988765544433 334566778889999999999999988762 3456778899999999999
Q ss_pred HHHHHHHh--------cCC-------------C-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH-HHHHH----
Q 005990 103 EALESLKI--------QEN-------------N-PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE-INFVA---- 155 (666)
Q Consensus 103 ~A~~~l~~--------~~~-------------~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~l~~---- 155 (666)
.|+..++. .|+ + ...+.++|.++.+.|+.+||+..|.......|--.. -|+..
T Consensus 80 kA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~v 159 (242)
T 3kae_A 80 KAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKV 159 (242)
T ss_dssp HHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCC
Confidence 99998886 121 2 345678999999999999999999987765543222 11100
Q ss_pred --------HHHH--cC----ChhHHHHH--------HHHhhhcCCChHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHhhh
Q 005990 156 --------GLIS--AG----RASEVQKT--------LDSLRVKATSSFE-LAYNTACSLAEMNKYTEAEQLLLTARRIGQ 212 (666)
Q Consensus 156 --------~~~~--~g----~~~~A~~~--------~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 212 (666)
+... .| .+....+. .++-...-|.-.. ..-+.|..|+..|-.++...+|......+|
T Consensus 160 p~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 160 PQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp CCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred CcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCC
Confidence 0000 00 00011111 1111122233211 234567789999999999999999888775
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.42 E-value=0.022 Score=45.74 Aligned_cols=72 Identities=7% Similarity=0.004 Sum_probs=51.4
Q ss_pred CchHHHHHHHHHHhhCC---hhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhH
Q 005990 350 SVMPLLLQAAVLVRENK---AGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPAT 421 (666)
Q Consensus 350 ~~~~~~~~a~~~~~~g~---~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~ 421 (666)
+....+.+|.++.+..+ ..+++.+|+.++...|....+.++.+|..+.+.|+|++|..+.+.+++..| +...
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 34566677776666544 346778888877777766666777888888888888888888888888777 4443
No 240
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.34 E-value=1.4 Score=46.70 Aligned_cols=117 Identities=10% Similarity=0.078 Sum_probs=68.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhC--CHHHHHHHHHhcCCChhHHHHHHHHH---HHcCCH
Q 005990 57 MRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQN--RLDEALESLKIQENNPATMLLKSQIL---YRSGEM 131 (666)
Q Consensus 57 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g--~~~~A~~~l~~~~~~~~~~~~la~~~---~~~g~~ 131 (666)
.+.-+.-.++.|++..+..+...+....-..+.+.......++ ...+...++...|+.+....+..... .+.+++
T Consensus 9 ~~~~a~~a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w 88 (618)
T 1qsa_A 9 RYAQIKQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDW 88 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCcccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCH
Confidence 3444555667788888777766653222222323333333333 57888888888888776655554443 345566
Q ss_pred HHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHhhhcC
Q 005990 132 DACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSLRVKA 177 (666)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 177 (666)
..-+..|.. .|.+.+ |.+..+....|+..+|......+-...
T Consensus 89 ~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 89 RGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 655554432 245444 777777888888777776666654433
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.26 E-value=0.029 Score=45.75 Aligned_cols=72 Identities=7% Similarity=0.004 Sum_probs=49.6
Q ss_pred CchHHHHHHHHHHhhCC---hhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCC-ChhH
Q 005990 350 SVMPLLLQAAVLVRENK---AGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPAT 421 (666)
Q Consensus 350 ~~~~~~~~a~~~~~~g~---~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~ 421 (666)
+....|.+|.++.+..+ ..+++.+|+.++...|....++++.+|..+.+.|+|++|..+.+.+++..| +...
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 44566667776666554 346777777777777766666777777777777777777777777777777 4443
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.15 Score=43.68 Aligned_cols=128 Identities=13% Similarity=0.061 Sum_probs=84.5
Q ss_pred HHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCCCChhHHHHHHHHHHHcCChhHHH
Q 005990 360 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAA 439 (666)
Q Consensus 360 ~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 439 (666)
+....|+++.|.++.+.+ ++ ...|..++...+..|+++-|..+|.++.+ +..+.-+|.-.|+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~-~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----ND-SITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CC-HHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh-----CC-HHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCCHHHHH
Confidence 346788999998887764 22 34899999999999999999999999765 445666788888887655
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCChHHHHHHHHhhccCChhhHHHHHhcC
Q 005990 440 AVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDKAESYEKRL 518 (666)
Q Consensus 440 ~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~l~~l~~~~~~~d~~~a~~~~~~l 518 (666)
.+.+.+.... . +.....+++..|++++++++|.+.-.. | . .++.+-++...+.|+++...+
T Consensus 81 kla~iA~~~g--------~----~n~af~~~l~lGdv~~~i~lL~~~~r~-~--e---A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTRE--------D----FGSMLLNTFYNNSTKERSSIFAEGGSL-P--L---AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHTT--------C----HHHHHHHHHHHTCHHHHHHHHHHTTCH-H--H---HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc--------c----HHHHHHHHHHcCCHHHHHHHHHHCCCh-H--H---HHHHHHHcCcHHHHHHHHHHh
Confidence 5544442211 1 112234567889999999998654321 1 1 123333455556677776554
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.036 Score=59.75 Aligned_cols=114 Identities=13% Similarity=0.032 Sum_probs=74.3
Q ss_pred cCC-HHHHHHHHHHHHhhCCChhH-HHHHHH--HHHcC-ChhHHHHHHHHhhhc--------C----------CChHHHH
Q 005990 128 SGE-MDACVEFYQKLQKSKIDSLE-INFVAG--LISAG-RASEVQKTLDSLRVK--------A----------TSSFELA 184 (666)
Q Consensus 128 ~g~-~~~A~~~~~~~l~~~p~~~~-~~l~~~--~~~~g-~~~~A~~~~~~~~~~--------~----------~~~~~~~ 184 (666)
.++ ++.|+.+++++...+|.... +..+.+ +...+ +--+|+.++.+.++. . +...+++
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL 340 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLL 340 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHH
Confidence 444 56788888888777775433 111111 11111 122355555444321 1 2224466
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 005990 185 YNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDI 256 (666)
Q Consensus 185 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~ 256 (666)
...+..++..|+|+-|+++-++|+...| .++ ..|+.|+.+|..+|+|+.|+-.++.+
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aP----------seF-----~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELAL----------DSF-----ESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS----------SCH-----HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCc----------hhh-----HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 6677788889999999999999998884 444 58999999999999999999888776
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.11 Score=44.51 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=41.5
Q ss_pred HHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhh
Q 005990 29 RHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQ 81 (666)
Q Consensus 29 ~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~ 81 (666)
..++.|+++.|.++++.+ ++...|..+|...+..|+++-|...|.++.
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 446789999999998876 678899999999999999999999999873
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.65 E-value=2.2 Score=43.27 Aligned_cols=157 Identities=11% Similarity=0.047 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHhhCC-C----hhHHHHHHHHHHHHHcCChhHHHHHHhcCcC----CCCChh---
Q 005990 353 PLLLQAAVLVRENKAGKAEELLGQFAEKLP-D----KSKIILLARAQVAAAANHPFIAAESLAKIPD----IQHMPA--- 420 (666)
Q Consensus 353 ~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p-~----~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~----~~~~~~--- 420 (666)
+...++.++...|++.+|..++..+....- . .-..+++...++|...+++.+|..++.++.. ..+.+.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 345667788888888888888877653211 1 1234677778888888888888888887632 222332
Q ss_pred -HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhc--CChHHHH
Q 005990 421 -TVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH--GSIEALV 497 (666)
Q Consensus 421 -~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~l~ 497 (666)
+....|.++...++|.+|..+|..++........ ......++..+..+.+-.+....-.....++.... ++...+.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d-~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~ 297 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSD-EAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQE 297 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCC-HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHH
Confidence 3467788888899999999999888876533221 11222233333333333332233233333333322 2234455
Q ss_pred HHHHhhccCChhh
Q 005990 498 GLVTTSAHVDVDK 510 (666)
Q Consensus 498 ~l~~~~~~~d~~~ 510 (666)
.++.+|...++..
T Consensus 298 ~L~k~f~~~~L~~ 310 (445)
T 4b4t_P 298 SLVKLFTTNELMR 310 (445)
T ss_dssp HHHHHHHHCCSSS
T ss_pred HHHHHHHhchHhh
Confidence 5666665544433
No 246
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.60 E-value=0.06 Score=59.26 Aligned_cols=102 Identities=8% Similarity=-0.096 Sum_probs=75.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhcccc----CCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHH
Q 005990 320 YANRVLLLLHANKMDQARELVAALPDM----FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV 395 (666)
Q Consensus 320 ~~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~ 395 (666)
+..+...++..|+.++|..+|..+... ..-+...+..+...+++.|++++|.++|.++.+..-......+..+...
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~g 209 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 444566788999999999999775432 2335577777888899999999999999998875422224477778888
Q ss_pred HHHcCCh-hHHHHHHhcCcCCCCChhH
Q 005990 396 AAAANHP-FIAAESLAKIPDIQHMPAT 421 (666)
Q Consensus 396 ~~~~g~~-~~A~~~l~~~~~~~~~~~~ 421 (666)
+++.|+. ++|..+|+.+.+....|..
T Consensus 210 lcK~G~~~e~A~~Ll~EM~~kG~~PD~ 236 (1134)
T 3spa_A 210 MGRQDQDAGTIERCLEQMSQEGLKLQA 236 (1134)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHTCCSHH
T ss_pred HHhCCCcHHHHHHHHHHHHHcCCCCCh
Confidence 8888875 6888999988775544443
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.56 E-value=0.2 Score=40.80 Aligned_cols=72 Identities=8% Similarity=-0.064 Sum_probs=57.2
Q ss_pred CCChhHHHHHHHHHHHcCChh---HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC
Q 005990 416 QHMPATVATLVALKERAGDID---GAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 416 ~~~~~~~~~l~~~~~~~g~~~---~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
.+.+...+.++|.+.+..+.. +++.+|+..+... + .....++..+|..+++.|+|.+|..+.+.+++..|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~---~---~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---E---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC---C---STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---c---cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 357888899999999987765 5777777766532 1 133457778999999999999999999999999998
Q ss_pred h
Q 005990 493 I 493 (666)
Q Consensus 493 ~ 493 (666)
+
T Consensus 110 n 110 (144)
T 1y8m_A 110 N 110 (144)
T ss_dssp C
T ss_pred c
Confidence 4
No 248
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.22 E-value=0.14 Score=56.45 Aligned_cols=95 Identities=8% Similarity=-0.008 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCChhH-HHHHHHHHHcCChhHHHHHHHHhhhcC--CChHHHHHHH
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQK-----SKIDSLE-INFVAGLISAGRASEVQKTLDSLRVKA--TSSFELAYNT 187 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l 187 (666)
..+..+...|.+.|+.++|..+|..+.+ ..|+-.. ..+...|+..|++++|..+|+++.... |+ ...+..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD-vvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD-LLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc-HHHHHHH
Confidence 3456666666666666666666655432 2344444 555556666666666666666665432 33 2245555
Q ss_pred HHHHHHhcCH-HHHHHHHHHHHHhh
Q 005990 188 ACSLAEMNKY-TEAEQLLLTARRIG 211 (666)
Q Consensus 188 a~~~~~~g~~-~~A~~~l~~a~~~~ 211 (666)
..+++..|+. ++|.++|+++...+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 5556666653 55666666665544
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.046 Score=58.90 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhh
Q 005990 22 DLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQ 81 (666)
Q Consensus 22 ~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~ 81 (666)
-|..++.-++..|+|+-|+.++++++...|.+...|+.++.||+.+|+|+.|+-.++.++
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 456677778889999999999999999999999999999999999999999999999984
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.07 E-value=0.2 Score=45.89 Aligned_cols=120 Identities=12% Similarity=0.116 Sum_probs=84.0
Q ss_pred HHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHH
Q 005990 27 LNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALE 106 (666)
Q Consensus 27 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 106 (666)
+..+++.|+.++|+..+...++.+|.|.+....+...|+-.|+|+.|...++.+..+.|..... +..|..+=+-+.+..
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~-a~~yr~lI~aE~~R~ 82 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG-ASQLRHLVKAAQARK 82 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH-HHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999997776644321 111111101111111
Q ss_pred -HHHh--cCC---C---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 005990 107 -SLKI--QEN---N---PATMLLKSQILYRSGEMDACVEFYQKLQKSKID 147 (666)
Q Consensus 107 -~l~~--~~~---~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 147 (666)
+|.. .|. . .....+.+......|+.++|.++-.+++...|.
T Consensus 83 ~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 83 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 2221 221 2 233455666677789999999998888776543
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.68 E-value=1.9 Score=43.80 Aligned_cols=103 Identities=11% Similarity=0.047 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHhcCcC----CCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHH
Q 005990 388 ILLARAQVAAAANHPFIAAESLAKIPD----IQH---MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS 460 (666)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~l~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 460 (666)
+...++.+|...|++.+|..++..+.. ... ..+++.....+|...+++..|..++.++............-..
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 567889999999999999999998642 111 2345677789999999999999999998654433332222234
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHhc
Q 005990 461 VIMQEAASFKLRHGREEDASHLFEELVKTH 490 (666)
Q Consensus 461 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 490 (666)
.++...|.++...++|.+|..+|..++...
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 466778999999999999999999998653
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.56 E-value=1.6 Score=50.47 Aligned_cols=147 Identities=14% Similarity=0.098 Sum_probs=85.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCChhHHHHHHHHHHcCChhHHHH
Q 005990 90 LKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQK-SKIDSLEINFVAGLISAGRASEVQK 168 (666)
Q Consensus 90 ~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~l~~~~~~~g~~~~A~~ 168 (666)
.+...+...+.++-+.++..-.+.++...+++|.++...|++++|..+|+++.. ...++.... .... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~---------~~~~-~~ 886 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA---------VLRE-FQ 886 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCS---------SHHH-HH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhh---------hhcc-cc
Confidence 344456666777777766666677777778888888888888888888877632 111111000 0000 00
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHH
Q 005990 169 TLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQE 248 (666)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~e 248 (666)
.+.............++.+..++...|.++.++++-..|++..... +++. -...|..+-..+...|+|++
T Consensus 887 ~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~-------~~~~---~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 887 EIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD-------DEDL---SIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp HHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC-------CHHH---HHHHHHHHHHHHHHHCCSGG
T ss_pred cccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC-------Chhh---HHHHHHHHHHHHHhhCCHHH
Confidence 0000011111223456666777888888888888888888765221 1111 12356677777788888888
Q ss_pred HHHHHHHH
Q 005990 249 AFGAYTDI 256 (666)
Q Consensus 249 A~~~~~~~ 256 (666)
|...+...
T Consensus 957 Ay~aL~~~ 964 (1139)
T 4fhn_B 957 AHVALMVL 964 (1139)
T ss_dssp GGHHHHHH
T ss_pred HHHHHHhC
Confidence 87666544
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.50 E-value=0.47 Score=43.49 Aligned_cols=120 Identities=16% Similarity=0.034 Sum_probs=82.8
Q ss_pred HHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhH
Q 005990 325 LLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFI 404 (666)
Q Consensus 325 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~ 404 (666)
.-++..|..++|+..+...++..|.+......+.++++-.|+++.|..-++.+.+.+|+....+....-.+.. +.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a-----E~ 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA-----AQ 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----HH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----HH
Confidence 3467789999999999999999999999999999999999999999999999999999865433222111111 11
Q ss_pred HHH-HHhcCcCCCC-----ChhHHHHH--HHHHHHcCChhHHHHHHHHHHHHHHH
Q 005990 405 AAE-SLAKIPDIQH-----MPATVATL--VALKERAGDIDGAAAVLDSAIKWWLN 451 (666)
Q Consensus 405 A~~-~l~~~~~~~~-----~~~~~~~l--~~~~~~~g~~~~A~~~l~~a~~~~~~ 451 (666)
... +|.- ...| .+.....+ +......|+.++|..+-..|++..|.
T Consensus 80 ~R~~vfaG--~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 80 ARKDFAQG--AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHHHTTS--CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcC--CCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 111 1111 1112 22223333 33444579999999999888876543
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.86 E-value=0.27 Score=49.85 Aligned_cols=96 Identities=14% Similarity=0.069 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhhCChhHHHHHHHHHHhhC--CChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCC---CCChhH----H
Q 005990 352 MPLLLQAAVLVRENKAGKAEELLGQFAEKL--PDKSKIILLARAQVAAAANHPFIAAESLAKIPDI---QHMPAT----V 422 (666)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~----~ 422 (666)
.++..+|..++..|++++|.+.|.++.... +.....+++....+++..+++..+...+.++... .+++.. .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 466777888888888888888888776543 3344556777777777777777777777776432 123322 2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH
Q 005990 423 ATLVALKERAGDIDGAAAVLDSAIK 447 (666)
Q Consensus 423 ~~l~~~~~~~g~~~~A~~~l~~a~~ 447 (666)
...|.++...++|..|...|-.++.
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 3334445556667766666665543
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.01 E-value=0.94 Score=45.07 Aligned_cols=62 Identities=16% Similarity=0.089 Sum_probs=55.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 152 NFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 152 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
.++..+...|++.+|+..+..++..+|-+-.++..+..++...|+..+|+..|+++...-.+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~ 237 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD 237 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45566778999999999999999999999999999999999999999999999998776543
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.59 E-value=0.33 Score=48.42 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=39.5
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 005990 25 TSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSS 80 (666)
Q Consensus 25 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~ 80 (666)
..+..+...|++.+|+..+..++..+|-+..++..+..+|...|+..+|+..|+.+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444566677777777777777777777777777777777777777777777765
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.29 E-value=2.3 Score=42.96 Aligned_cols=101 Identities=14% Similarity=-0.009 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhc---CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVK---ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEI 227 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 227 (666)
..+|..|...|+++.|.++|.++... ...-.+.++....+++..++|..+..++.++..+..... .. .
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~------d~---~ 205 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG------DW---E 205 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC------CT---H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC------CH---H
Confidence 55566666666666666666555432 234567888888888899999999999999877653210 11 1
Q ss_pred hhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 005990 228 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRN 260 (666)
Q Consensus 228 ~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~ 260 (666)
.........|.++...++|.+|...|-.++...
T Consensus 206 ~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 206 RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 123456666777888899999999988877544
No 258
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.28 E-value=0.6 Score=47.44 Aligned_cols=126 Identities=9% Similarity=-0.011 Sum_probs=56.9
Q ss_pred HHHHcCChHHHHHHHHhccc--c---------CCCCchHHHHHHHHHHhhCChhHH----------HHHHHHHHh-----
Q 005990 326 LLLHANKMDQARELVAALPD--M---------FPDSVMPLLLQAAVLVRENKAGKA----------EELLGQFAE----- 379 (666)
Q Consensus 326 ~~~~~~~~~~A~~~~~~~~~--~---------~p~~~~~~~~~a~~~~~~g~~~~A----------~~~l~~~~~----- 379 (666)
.++..+++++|.++...+.. . ++-...+|++.+.++...|+.... ...+-.++.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 36678889988877765541 1 122335667777777777765542 222222222
Q ss_pred hCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCC---CC---hhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 005990 380 KLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ---HM---PATVATLVALKERAGDIDGAAAVLDSAIKWWLN 451 (666)
Q Consensus 380 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~---~~---~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~ 451 (666)
.+.+....++..+...|+..+.+++|..+..+..-.. ++ ..+.+.+|.++.-.++|.+|.+.|..|+...|.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 2344334477788899999999999999999974211 12 223577899999999999999999999876543
No 259
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.03 E-value=1.1 Score=45.55 Aligned_cols=119 Identities=11% Similarity=0.047 Sum_probs=52.6
Q ss_pred HhhhccHHHHHHHHHHHHh--c---------CCCCHHHHHHHHHHHHHcCCHHHHHH--------------HHHhh-hcc
Q 005990 30 HIERSEFEQAVKVADQVLS--T---------NPSDEDAMRCKVVALIKADNIDDALS--------------TIQSS-QKF 83 (666)
Q Consensus 30 ~~~~~~~~~A~~~~~~~l~--~---------~p~~~~a~~~~~~~~~~~g~~~~A~~--------------~~~~~-~~~ 83 (666)
++.+++|++|..+...++. . ++-...+|+..+.++-..|+..+.+. .+..+ ...
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 4788999999998876651 1 23345667777777777777655321 11111 111
Q ss_pred c----hhhhHHHHHHHHHhCCHHHHHHHHHh--cCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCh
Q 005990 84 T----FDFNYLKAYCLYRQNRLDEALESLKI--QENN-------PATMLLKSQILYRSGEMDACVEFYQKLQKSKIDS 148 (666)
Q Consensus 84 ~----~~~~~~~a~~~~~~g~~~~A~~~l~~--~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 148 (666)
+ ..++..+...|...+.++.|..++.+ .|.. ...++.+|.++.-.++|.+|.+.+..++...|.+
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 1 24555777888889999999999988 3432 4556788999999999999999999998876643
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.01 E-value=11 Score=35.76 Aligned_cols=86 Identities=10% Similarity=-0.032 Sum_probs=51.7
Q ss_pred HHHHHHhcCcCCCC-ChhHHHHHHHHHHHcCChhHHHHHHH------------HHHHHHHHhc-cCcchHHHHHHHHHHH
Q 005990 404 IAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLD------------SAIKWWLNAM-TEDNKLSVIMQEAASF 469 (666)
Q Consensus 404 ~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~------------~a~~~~~~~~-~~~~~~~~~~~~l~~~ 469 (666)
+|+.+-.+.-+... +|.+...+|..|...|++.+|..+|- -.+++....+ +...+...++.+.+..
T Consensus 118 ~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~ 197 (312)
T 2wpv_A 118 GMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFN 197 (312)
T ss_dssp HHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence 45555554433222 77788888888888888877777552 1223332210 1122333345556667
Q ss_pred HHhCCChhhHHHHHHHHHHh
Q 005990 470 KLRHGREEDASHLFEELVKT 489 (666)
Q Consensus 470 ~~~~g~~~~A~~~~~~~l~~ 489 (666)
|+..|+...|...|+...+.
T Consensus 198 yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 198 YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 78999999999998876543
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.98 E-value=4.7 Score=46.55 Aligned_cols=141 Identities=13% Similarity=-0.009 Sum_probs=96.7
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCcCCC-------------------
Q 005990 356 LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ------------------- 416 (666)
Q Consensus 356 ~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~------------------- 416 (666)
.+...+...+.++-+..+ +...|.++. ..+.+|.+++..|++++|..+|+++..--
T Consensus 817 ~l~~~l~~~~~~~~~~~l----~~~~~~~~~-~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQL----IGWLNSDPI-AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHH----HHHSCCCHH-HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHH----hhhccCCcH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 344456667777665543 344555554 56889999999999999999999873210
Q ss_pred ----C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcch-HHHHHHHHHHHHHhCCChhhHHHHHHHHHHhc
Q 005990 417 ----H-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNK-LSVIMQEAASFKLRHGREEDASHLFEELVKTH 490 (666)
Q Consensus 417 ----~-~~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 490 (666)
. .+.++..++.++.+.|.++.+++....|++... ..+.. ...+|..+-..++..|+|++|-..+-..-...
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~---~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE---TDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCC---SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc---CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 0 123456778888999999999999999987532 12222 22367777788899999999988876554322
Q ss_pred CChHHHHHHHHhhc
Q 005990 491 GSIEALVGLVTTSA 504 (666)
Q Consensus 491 p~~~~l~~l~~~~~ 504 (666)
-....+..||..+.
T Consensus 969 ~r~~cLr~LV~~lc 982 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLT 982 (1139)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 22667777776654
No 262
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=89.82 E-value=2.8 Score=44.41 Aligned_cols=102 Identities=6% Similarity=0.013 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCChhHHHHHHhcCcCCCCChh-HHHHHHHHHHHcC--C---------hhHHHHHHHHHHHHHHHhc----
Q 005990 390 LARAQVAAAANHPFIAAESLAKIPDIQHMPA-TVATLVALKERAG--D---------IDGAAAVLDSAIKWWLNAM---- 453 (666)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~~~l~~~~~~~g--~---------~~~A~~~l~~a~~~~~~~~---- 453 (666)
...|.-....|++++|+.+|.-+-+.+.--. +...|+.+..... + .+.-..+.....+.+..+.
T Consensus 447 ~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~ 526 (661)
T 2qx5_A 447 EQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISR 526 (661)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhh
Confidence 3445566778888888888877655443111 2234444444331 1 0122233333333332210
Q ss_pred cC---cchHHHHHHHHHHHH--HhCCChhhHHHHHHHHHHhcCC
Q 005990 454 TE---DNKLSVIMQEAASFK--LRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 454 ~~---~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
.. ......++..+..++ +..|+++.|++.++++ .+-|-
T Consensus 527 ~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L-~llPl 569 (661)
T 2qx5_A 527 QIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL-DLLPF 569 (661)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT-SCSCC
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Confidence 00 111223444555555 6778888888877773 34454
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.24 E-value=30 Score=38.23 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcC
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNK 196 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 196 (666)
.....+++..++.+.+.++|.++.. .++....|.+|..+.+.+.
T Consensus 234 ~~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~~~ 277 (963)
T 4ady_A 234 LTLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSSAS 277 (963)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhcccc
Confidence 5667778888999999999998864 4466678888888776543
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.94 E-value=19 Score=34.34 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=18.2
Q ss_pred ChHHHHHHHHHHHHHhcCHHHHHHHH
Q 005990 179 SSFELAYNTACSLAEMNKYTEAEQLL 204 (666)
Q Consensus 179 ~~~~~~~~la~~~~~~g~~~~A~~~l 204 (666)
.+++++..+|..|+..+++.+|+.+|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 45667777777777777777776665
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.38 E-value=7.6 Score=29.12 Aligned_cols=81 Identities=16% Similarity=0.070 Sum_probs=57.5
Q ss_pred HHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHH
Q 005990 27 LNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALE 106 (666)
Q Consensus 27 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 106 (666)
+....-...+++|..+.+ .|...++..-+-......++..|+|++|+.+.+... .|++.-..|.|-+++|-.+.+..
T Consensus 13 AL~gTG~H~HqEA~tIAd-wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce~rlGl~s~le~ 89 (115)
T 2uwj_G 13 ALAGSGQHCHEEALCIAE-WLERLGQDEAARLIRISSLANQGRYQEALAFAHGNP--WPALEPWFALCEWHLGLGAALDR 89 (115)
T ss_dssp HHHHHTTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC--CGGGHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHccchHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHHHhcccHHHHHH
Confidence 333344556788877665 456666644455566778999999999998887763 56677778888888888888877
Q ss_pred HHHh
Q 005990 107 SLKI 110 (666)
Q Consensus 107 ~l~~ 110 (666)
.+..
T Consensus 90 rL~~ 93 (115)
T 2uwj_G 90 RLAG 93 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.25 E-value=21 Score=34.06 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=38.0
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHH------------HHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHH
Q 005990 418 MPATVATLVALKERAGDIDGAAAVL------------DSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEE 485 (666)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~~~A~~~l------------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 485 (666)
+|.+...+|.+|...+++.+|...| +-.+++..... ..+...++.+...-|+..++...|...|+.
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~--~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~ 212 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE--SHTAPLYCARAVLPYLLVANVRAANTAYRI 212 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5555556666666655555554433 11122222211 223334555666777888999999887665
Q ss_pred HHH
Q 005990 486 LVK 488 (666)
Q Consensus 486 ~l~ 488 (666)
..+
T Consensus 213 f~~ 215 (336)
T 3lpz_A 213 FTS 215 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 267
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=86.92 E-value=0.00025 Score=70.16 Aligned_cols=81 Identities=21% Similarity=0.241 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLEINFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAE 193 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 193 (666)
.+.+|..+|..++..+...+|++.|-++ .+|.+. .....+....|.+++-+..+.-+.+.-. .+.+-..+..+|..
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y-~eVi~~A~~~~~~edLv~yL~MaRk~~k-e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSY-MEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSS-SHHHHHTTTSSCCTTHHHHHHTTSTTCC-STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccHHHHHHHHHh
Confidence 5677777777777777777777777443 344433 2333334456777777766665544321 12233334455555
Q ss_pred hcCHH
Q 005990 194 MNKYT 198 (666)
Q Consensus 194 ~g~~~ 198 (666)
.+++.
T Consensus 129 ~~rL~ 133 (624)
T 3lvg_A 129 TNRLA 133 (624)
T ss_dssp SCSSS
T ss_pred hCcHH
Confidence 55543
No 268
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=86.32 E-value=4.8 Score=33.25 Aligned_cols=89 Identities=11% Similarity=0.221 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHH-HHHHHHHhhhccchhhhHHHHHHHHHh
Q 005990 22 DLFTSLNRHIERSEFEQAVKVADQVLSTNPSD--EDAMRCKVVALIKADNID-DALSTIQSSQKFTFDFNYLKAYCLYRQ 98 (666)
Q Consensus 22 ~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~a~~~~~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~a~~~~~~ 98 (666)
..+..+...+-..+|...+..++.+ +|.. ..+.+.+|.+|++...+. +-...+-....+..+..+..-+++.-.
T Consensus 10 ~a~i~a~~afl~~dYs~VI~~L~~~---~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde~yL~YWIyiGR 86 (161)
T 2ynq_A 10 EAYIQSTELFLQNKYSDVITTLEDY---APEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDEQYMLYWIYIGR 86 (161)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTTS---CGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcC---ChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCHHHHHHHHHHcC
Confidence 4455666666666777666665443 2322 456666677776665543 223333333333344444444555556
Q ss_pred CCHHHHHHHHHhcCC
Q 005990 99 NRLDEALESLKIQEN 113 (666)
Q Consensus 99 g~~~~A~~~l~~~~~ 113 (666)
|++++|+.+.....+
T Consensus 87 g~~~eAlDiA~~L~D 101 (161)
T 2ynq_A 87 SQSEEALELARTIED 101 (161)
T ss_dssp TCHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHhcCc
Confidence 666666665555443
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.92 E-value=10 Score=28.43 Aligned_cols=83 Identities=17% Similarity=0.092 Sum_probs=60.6
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHH
Q 005990 25 TSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEA 104 (666)
Q Consensus 25 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 104 (666)
..+....-...+++|..+.+ .|...++..-+-......++..|+|++|+.+.+... .|++.-..|.|-+++|-.+.+
T Consensus 12 E~AL~gTG~H~HqEA~tIAd-wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce~rlGl~s~l 88 (116)
T 2p58_C 12 EIALIGTGNHYHEEANCIAE-WLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA--YPDLEPWLALCEYRLGLGSAL 88 (116)
T ss_dssp HHHHHHHTTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC--CGGGHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHccchHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHHHhcccHHHH
Confidence 33444445567888887665 466666644455566778999999999999988764 567777888889999988888
Q ss_pred HHHHHh
Q 005990 105 LESLKI 110 (666)
Q Consensus 105 ~~~l~~ 110 (666)
...+..
T Consensus 89 e~rL~~ 94 (116)
T 2p58_C 89 ESRLNR 94 (116)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877744
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.06 E-value=29 Score=32.80 Aligned_cols=143 Identities=10% Similarity=0.102 Sum_probs=76.8
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHh
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQ 98 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~ 98 (666)
.++..+.+....+..|+|=+|.+.+..+ ..=|.++++|++|++++... +..+.+.
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl--------------~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~ 66 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTI--------------ANRYVRSKSYEHAIELISQG-----------ALSFLKA 66 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHH-----------HHHHHHT
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHH--------------HHHHHHhcCHHHHHHHHHHH-----------HHHHHHC
Confidence 4666677777777777776666655443 34467778888888887665 3334445
Q ss_pred CCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCC-ChhH-HHHHHHHHHcCChhHHHHHHHHhh
Q 005990 99 NRLDEALESLKIQENNPATMLLKSQILYRSGEM--DACVEFYQKLQKSKI-DSLE-INFVAGLISAGRASEVQKTLDSLR 174 (666)
Q Consensus 99 g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p-~~~~-~~l~~~~~~~g~~~~A~~~~~~~~ 174 (666)
|++..|.++. .++.++|-..+.. ++.+.-+.++++.-| ++.. ..+ ...|+..-.+.-
T Consensus 67 ~Q~~sa~DLa----------~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~f---------i~~ai~WS~~~g 127 (312)
T 2wpv_A 67 KQGGSGTDLI----------FYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDV---------ITGMNNWSIKFS 127 (312)
T ss_dssp TCHHHHHHHH----------HHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHH---------HHHHHHHHHHTS
T ss_pred CCcchHHHHH----------HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHH---------HHHHHHHHhhcC
Confidence 5555444332 2222333333221 233333444444322 2221 111 011222222211
Q ss_pred hcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Q 005990 175 VKATSSFELAYNTACSLAEMNKYTEAEQLLL 205 (666)
Q Consensus 175 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 205 (666)
...-.+++++..+|..|...|++.+|..+|-
T Consensus 128 ~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 128 EYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 1123477888889999999898888888775
No 271
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.70 E-value=21 Score=40.19 Aligned_cols=109 Identities=14% Similarity=0.088 Sum_probs=75.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCChhH----HHHHHHHHHcCCh
Q 005990 89 YLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQK-SKIDSLE----INFVAGLISAGRA 163 (666)
Q Consensus 89 ~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~----~~l~~~~~~~g~~ 163 (666)
.++...+...|.++-|.+++.-.|.++...+++|.+|...|++++|..+|+++-. ...+... .....++
T Consensus 814 ~~l~~~L~~~~~~~~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll------ 887 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA------ 887 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHH------
T ss_pred HHHHHHHHHhcHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhcc------
Confidence 3455666778888888887777888888889999999999999999999998742 2111111 1111111
Q ss_pred hHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 005990 164 SEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIG 211 (666)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 211 (666)
.. .+........|.....++...+-++-++++-+.|++..
T Consensus 888 -------~~-~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 888 -------EK-YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp -------HH-TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred -------Cc-ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 00 11111123366778888999999999999999999865
No 272
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=78.93 E-value=15 Score=30.35 Aligned_cols=82 Identities=11% Similarity=0.156 Sum_probs=51.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhh--hccchhhhHHHHHHHHHhCCHHH-HHH-HHHhcCCChhHHHHHHHHHHHcCCHHHHH
Q 005990 60 KVVALIKADNIDDALSTIQSS--QKFTFDFNYLKAYCLYRQNRLDE-ALE-SLKIQENNPATMLLKSQILYRSGEMDACV 135 (666)
Q Consensus 60 ~~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~a~~~~~~g~~~~-A~~-~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 135 (666)
-+...+-..+|...+..++.. ..++....|.+|+.|.+...+.+ ..+ ++....-...-.+++=+++...|++++|+
T Consensus 14 ~a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde~yL~YWIyiGRg~~~eAl 93 (161)
T 2ynq_A 14 QSTELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDEQYMLYWIYIGRSQSEEAL 93 (161)
T ss_dssp HHHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCHHHHHHHHHHcCCchHHHH
Confidence 344555667788888888776 33455677788888887666442 222 23333333344556667777788888888
Q ss_pred HHHHHH
Q 005990 136 EFYQKL 141 (666)
Q Consensus 136 ~~~~~~ 141 (666)
.+-+.+
T Consensus 94 DiA~~L 99 (161)
T 2ynq_A 94 ELARTI 99 (161)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777664
No 273
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=77.17 E-value=25 Score=35.36 Aligned_cols=84 Identities=8% Similarity=-0.047 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhh-----CCC---h---hH-------HHHHHHHHHcCChhHHHHHHHHhhhcC--------C--ChH
Q 005990 130 EMDACVEFYQKLQKS-----KID---S---LE-------INFVAGLISAGRASEVQKTLDSLRVKA--------T--SSF 181 (666)
Q Consensus 130 ~~~~A~~~~~~~l~~-----~p~---~---~~-------~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~--~~~ 181 (666)
..++|..++.++... +++ + .. .++..+|++.++..-+..++..+.... | +-.
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 456777777777653 111 1 11 566788999999999998887654322 1 234
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-hhh
Q 005990 182 ELAYNTACSLAEMNKYTEAEQLLLTARRI-GQE 213 (666)
Q Consensus 182 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~-~~~ 213 (666)
...|.+|.+++..++|.+|.+.|..|+.. |+.
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 56899999999999999999999999999 864
No 274
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=75.10 E-value=15 Score=29.66 Aligned_cols=55 Identities=18% Similarity=0.252 Sum_probs=43.3
Q ss_pred HHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 005990 157 LISAGRASEVQKTLDSLRVKATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIG 211 (666)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 211 (666)
+...|.-++-..++..++...+-+++.++.+|.+|-..|+..+|.+++.+|.+..
T Consensus 101 lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4456777777777777666667778899999999999999999999999987765
No 275
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=74.97 E-value=14 Score=37.84 Aligned_cols=67 Identities=15% Similarity=0.006 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005990 183 LAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA 262 (666)
Q Consensus 183 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~ 262 (666)
.+..+|.+......+..|..+|.+|..+.|. ....+++||.+....|+.-+|+-+|-+++.....
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~---------------~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P 218 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS---------------NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC---------------CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCC
Confidence 5677888888888999999999999999965 3469999999999999999999999999866544
Q ss_pred CH
Q 005990 263 DE 264 (666)
Q Consensus 263 ~~ 264 (666)
.+
T Consensus 219 f~ 220 (497)
T 1ya0_A 219 FP 220 (497)
T ss_dssp CH
T ss_pred Ch
Confidence 43
No 276
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=73.87 E-value=15 Score=37.49 Aligned_cols=78 Identities=8% Similarity=-0.101 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhccccCCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHH
Q 005990 319 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 397 (666)
Q Consensus 319 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~ 397 (666)
....++.+......+..|..+|..+....|++...+..+|.+....|+.-+|+-+|.+++......+. +...+..++.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~-a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA-ASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH-HHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChh-HHHHHHHHHH
Confidence 45667888888888999999999999999999999999999999999999999888888765433333 5555555554
No 277
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=71.80 E-value=29 Score=26.05 Aligned_cols=69 Identities=23% Similarity=0.106 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHH
Q 005990 58 RCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEF 137 (666)
Q Consensus 58 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 137 (666)
..++.++...+. +++..+++ ...+...|+|++|..+.+..+ .+.+--++|-+-.+.|-.+++...
T Consensus 26 ~tIAdwL~~~~~-~E~v~lIR-------------~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce~rlGl~s~le~r 90 (115)
T 2uwj_G 26 LCIAEWLERLGQ-DEAARLIR-------------ISSLANQGRYQEALAFAHGNP-WPALEPWFALCEWHLGLGAALDRR 90 (115)
T ss_dssp HHHHHHHHHTTC-HHHHHHHH-------------HHHHHHTTCHHHHHGGGTTCC-CGGGHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHH-------------HHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHHHhcccHHHHHHH
Confidence 344555555555 55554444 346778899999998887766 677777888888899988887777
Q ss_pred HHHH
Q 005990 138 YQKL 141 (666)
Q Consensus 138 ~~~~ 141 (666)
+.++
T Consensus 91 L~~l 94 (115)
T 2uwj_G 91 LAGL 94 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 278
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.45 E-value=30 Score=26.03 Aligned_cols=69 Identities=19% Similarity=0.146 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHH
Q 005990 58 RCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEF 137 (666)
Q Consensus 58 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 137 (666)
..++.++...+. +++..+++ ...+...|+|++|..+.+..+ .+.+--++|-+-.+.|-.+++...
T Consensus 27 ~tIAdwL~~~~~-~E~v~lIR-------------~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce~rlGl~s~le~r 91 (116)
T 2p58_C 27 NCIAEWLHLKGE-EEAVQLIR-------------LSSLMNRGDYASALQQGNKLA-YPDLEPWLALCEYRLGLGSALESR 91 (116)
T ss_dssp HHHHHHHHHTTC-HHHHHHHH-------------HHHHHHTTCHHHHHHHHTTSC-CGGGHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHH-------------HHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHHHhcccHHHHHHH
Confidence 344555555555 55554444 346778899999999988766 677777788888888888877766
Q ss_pred HHHH
Q 005990 138 YQKL 141 (666)
Q Consensus 138 ~~~~ 141 (666)
+.++
T Consensus 92 L~~l 95 (116)
T 2p58_C 92 LNRL 95 (116)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6444
No 279
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.88 E-value=42 Score=29.18 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=41.1
Q ss_pred cCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcCC
Q 005990 432 AGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 492 (666)
Q Consensus 432 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 492 (666)
.++..++..+|.-+... ..+ ..+..++...|.++...|++.+|.++|+..++....
T Consensus 92 ~~~~~~p~~if~~L~~~---~IG--~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 92 SNNFHESENTFKYMFNK---GIG--TKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp TTCHHHHHHHHHHHHHH---TSS--TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred ccccCCHHHHHHHHHHC---CCc--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 34466788888766543 232 445557778888999999999999999999987643
No 280
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.90 E-value=56 Score=36.66 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=38.8
Q ss_pred HHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcCChhHHHHHHhcCc
Q 005990 357 QAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP 413 (666)
Q Consensus 357 ~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 413 (666)
+...+...|.++-|. .++...|.++. ..+.+|.+|+..|++++|..+|+++.
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~-~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPI-AVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHH-HHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 444556677776443 34566677655 56889999999999999999999885
No 281
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.99 E-value=84 Score=30.87 Aligned_cols=96 Identities=6% Similarity=-0.171 Sum_probs=57.2
Q ss_pred HHHHHHcCChhHHHHHHhcCcCCC----------------CC--hhHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcc
Q 005990 393 AQVAAAANHPFIAAESLAKIPDIQ----------------HM--PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMT 454 (666)
Q Consensus 393 a~~~~~~g~~~~A~~~l~~~~~~~----------------~~--~~~~~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~ 454 (666)
..+.....+.++|++.++.+.... .. -.+...++.+|...|+.+.|..+++++-........
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 334455667777777776542211 01 123456677888888888888888888665544333
Q ss_pred Ccc-hHHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005990 455 EDN-KLSVIMQEAASFKLRHGREEDASHLFEELVK 488 (666)
Q Consensus 455 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 488 (666)
.++ ....++...+..+...+++..+...+-..+.
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 332 2344555566667777777766655554443
No 282
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=59.47 E-value=20 Score=25.26 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=28.3
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHhcCChHHH
Q 005990 465 EAASFKLRHGREEDASHLFEELVKTHGSIEAL 496 (666)
Q Consensus 465 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~l 496 (666)
.+|..+...|++++|...|-+++...|+...+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 66999999999999999999999999985544
No 283
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=59.19 E-value=35 Score=22.36 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=23.1
Q ss_pred hhhccHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 005990 31 IERSEFEQAVKVADQVLSTNPSD-EDAMRCKVVALIKADNIDDAL 74 (666)
Q Consensus 31 ~~~~~~~~A~~~~~~~l~~~p~~-~~a~~~~~~~~~~~g~~~~A~ 74 (666)
.-...+++|..+.+ +|...++. ..+-......+...|+|++|+
T Consensus 17 TG~HcH~EA~tIA~-~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 17 TGHHCHQEAASIAD-WLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HTTTCHHHHHHHHH-HHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred ccchHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 44456788876665 45666654 344456677888999999886
No 284
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=56.56 E-value=28 Score=30.58 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 181 FELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 181 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
....|.+|.+++..++|.+|.+.|..|+..++.
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 456889999999999999999999999999864
No 285
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=55.93 E-value=16 Score=39.08 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADN 69 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~ 69 (666)
...++..+..++..|+|.-|.++++.++..+|+|.++...++.+|.++|.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 46678889999999999999999999999999999999999988877763
No 286
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=55.25 E-value=20 Score=26.03 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=13.5
Q ss_pred HHcCChHHHHHHHHHHHh
Q 005990 241 QLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 241 ~~~g~~~eA~~~~~~~l~ 258 (666)
-..|++++|+.+|..+++
T Consensus 22 D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 356888888888887764
No 287
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.82 E-value=84 Score=25.89 Aligned_cols=51 Identities=20% Similarity=0.115 Sum_probs=39.6
Q ss_pred hhHHHHHHHHhhhc--CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 163 ASEVQKTLDSLRVK--ATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 163 ~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
.+++..+|.-+... .......+...|..+...|++.+|..+|+..++.+..
T Consensus 81 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 34577777776553 3456667777899999999999999999999998744
No 288
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.39 E-value=1.5e+02 Score=28.93 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=12.8
Q ss_pred HHHHHHHhhCChhHHHHHHHHH
Q 005990 356 LQAAVLVRENKAGKAEELLGQF 377 (666)
Q Consensus 356 ~~a~~~~~~g~~~~A~~~l~~~ 377 (666)
..+..+...|+.++|..+++++
T Consensus 132 ~i~~~yl~~~d~~~a~~~l~~~ 153 (393)
T 4b4t_O 132 EIARTYLLKNDLVKARDLLDDL 153 (393)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 3445555666666666666554
No 289
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=50.59 E-value=38 Score=31.92 Aligned_cols=31 Identities=3% Similarity=0.098 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhc
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLST 49 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~ 49 (666)
.+...+..+..++..|.|++|+..|+.+|..
T Consensus 113 ~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~ 143 (325)
T 3mv2_A 113 VVNEKMNEGYKNFKLNKPDIAIECFREAIYR 143 (325)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3455677788889999999999999998875
No 290
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=49.88 E-value=44 Score=23.48 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhH
Q 005990 232 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESS 266 (666)
Q Consensus 232 ~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~ 266 (666)
-...+|..+...|++++|...|-+++...|.-..+
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 34678889999999999999999999998866533
No 291
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.16 E-value=1.2e+02 Score=26.83 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhh--cCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 151 INFVAGLISAGRASEVQKTLDSLRV--KATSSFELAYNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
+.+...|+.. .+++..+|.-+.. +.......|...|..+...|++.+|..+|+..++.+..
T Consensus 120 LklWl~Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 120 LRIWMQYVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp HHHHHHHHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 4444444442 3566677776654 33456667777888999999999999999999998744
No 292
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=47.80 E-value=28 Score=34.99 Aligned_cols=71 Identities=10% Similarity=-0.028 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHH---HhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHh-cCC
Q 005990 422 VATLVALKERAGDIDGAAAVLDSAIKWWL---NAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT-HGS 492 (666)
Q Consensus 422 ~~~l~~~~~~~g~~~~A~~~l~~a~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~ 492 (666)
...+..+|++.|+...+..++...-.... -+.-+..+...+.+.+|.+++..++|.+|.+.|..++.. .|.
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 45667889999999888888864432210 011122345567788999999999999999999999998 553
No 293
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=44.64 E-value=1.3e+02 Score=26.60 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005990 115 PATMLLKSQILYRSGEMDACVEFYQKLQKS 144 (666)
Q Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 144 (666)
...|...|.++...|++.+|..+|+..+..
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 344445555555555555555555555543
No 294
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=43.84 E-value=96 Score=25.82 Aligned_cols=56 Identities=5% Similarity=-0.034 Sum_probs=40.3
Q ss_pred HHHHHHcCChHHHHHHHHhccccCCCC--c----hHHHH---HHHHHHhhCChhHHHHHHHHHHh
Q 005990 324 VLLLLHANKMDQARELVAALPDMFPDS--V----MPLLL---QAAVLVRENKAGKAEELLGQFAE 379 (666)
Q Consensus 324 a~~~~~~~~~~~A~~~~~~~~~~~p~~--~----~~~~~---~a~~~~~~g~~~~A~~~l~~~~~ 379 (666)
+..++..|+|-+|-++++.+-...+.. . ..++. .|..+.+.|+..-|..++.+++.
T Consensus 39 ~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 39 GVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 667788899999999999998776554 2 12222 23345568888888888888765
No 295
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.57 E-value=1.4e+02 Score=24.87 Aligned_cols=32 Identities=6% Similarity=-0.042 Sum_probs=19.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSK 145 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 145 (666)
....|...|.++-..|++.+|.++|+..+...
T Consensus 95 ~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 95 LAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44455566666666666666666666666543
No 296
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=43.37 E-value=54 Score=23.73 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh
Q 005990 234 VQLAYVQQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 234 ~~la~~~~~~g~~~eA~~~~~~~l~ 258 (666)
...|.-.-..|++++|+.+|..+++
T Consensus 23 v~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 23 AINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444445567899999998888774
No 297
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=42.62 E-value=35 Score=25.47 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhhh
Q 005990 185 YNTACSLAEMNKYTEAEQLLLTARRIGQE 213 (666)
Q Consensus 185 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 213 (666)
..+|..++..|+++.|+.+|-+|+..|+.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999999965
No 298
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=42.08 E-value=41 Score=25.01 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=13.4
Q ss_pred HHHcCChHHHHHHHHHHHh
Q 005990 240 QQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 240 ~~~~g~~~eA~~~~~~~l~ 258 (666)
.-..|+|++|+.+|..+++
T Consensus 25 ~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 25 LDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 3456788888888877764
No 299
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=41.69 E-value=87 Score=22.63 Aligned_cols=29 Identities=7% Similarity=0.069 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhc
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLST 49 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~ 49 (666)
..++.+|...-+.|+|++|+.+|..+++.
T Consensus 20 i~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 20 RKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34666777777778888888877776653
No 300
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=41.36 E-value=40 Score=25.13 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=27.8
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHhcCChHHH
Q 005990 465 EAASFKLRHGREEDASHLFEELVKTHGSIEAL 496 (666)
Q Consensus 465 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~l 496 (666)
.+|..++..|+++.|+..|-+++...|....+
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~L 56 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 56 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 56888999999999999999999999985554
No 301
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=40.51 E-value=1e+02 Score=22.35 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhh
Q 005990 181 FELAYNTACSLAEMNKYTEAEQLLLTARRIGQ 212 (666)
Q Consensus 181 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 212 (666)
......-|.-++..++|.+|..+|+++..+..
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te 84 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNLSD 84 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence 44556667778899999999999999987764
No 302
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=40.33 E-value=1.2e+02 Score=26.56 Aligned_cols=39 Identities=15% Similarity=0.018 Sum_probs=22.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhcCCChHHHHHHHHHH
Q 005990 152 NFVAGLISAGRASEVQKTLDSLRVKATSSFELAYNTACS 190 (666)
Q Consensus 152 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 190 (666)
....+++..|.|++|.++|++....++.+-.....|..+
T Consensus 119 qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~I 157 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNI 157 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 334455667777777777777666554444344444443
No 303
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=40.21 E-value=2e+02 Score=27.43 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=47.8
Q ss_pred ChhHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005990 418 MPATVATLVALKERA--GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVK 488 (666)
Q Consensus 418 ~~~~~~~l~~~~~~~--g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 488 (666)
.|..+..||.+-... .....++.+|.+|+...+........+ -+..+|.++++.+++.+|...|..+-.
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvY--PYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIY--PYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSH--HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCcc--chhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 566667777766543 223348899999988766554433333 334668899999999999999987764
No 304
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=39.51 E-value=1e+02 Score=22.27 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHh
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLS 48 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~ 48 (666)
..++.+|...=+.|+|++|+.+|..+++
T Consensus 12 i~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 12 RKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3466667667777788877777776654
No 305
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=37.92 E-value=53 Score=23.83 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=14.3
Q ss_pred HHHcCChHHHHHHHHHHHh
Q 005990 240 QQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 240 ~~~~g~~~eA~~~~~~~l~ 258 (666)
.-..|++++|+.+|..+++
T Consensus 23 ~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 23 LDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3456888888888887764
No 306
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=37.91 E-value=2e+02 Score=24.95 Aligned_cols=86 Identities=8% Similarity=-0.019 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHH
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDED-----AMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYC 94 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~ 94 (666)
+.-.|-.+..++.+++|.+|...+..++...|.+.. ++..+..+-+-+|++.. ..++++.. . ..+..+ ..
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~~~-~--~~y~~L-~~ 88 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKKYH-L--MQFAEV-TR 88 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHHTT-C--GGGHHH-HH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhhCc-h--hHHHHH-HH
Confidence 556778888888889999999999999888776532 23333344455666532 23333321 1 112222 23
Q ss_pred HHHhCCHHHHHHHHHh
Q 005990 95 LYRQNRLDEALESLKI 110 (666)
Q Consensus 95 ~~~~g~~~~A~~~l~~ 110 (666)
.++.|++....+.+++
T Consensus 89 Avr~Gdl~~f~~~l~~ 104 (203)
T 3t5x_A 89 AVSEGNLLLLHEALAK 104 (203)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 4556666555555544
No 307
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=37.33 E-value=1.7e+02 Score=24.01 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=21.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 005990 114 NPATMLLKSQILYRSGEMDACVEFYQKLQKSK 145 (666)
Q Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 145 (666)
....+...|..+...|++.+|.++|+..++..
T Consensus 100 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 100 SSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44556666777777777777777777776653
No 308
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=36.71 E-value=36 Score=24.32 Aligned_cols=28 Identities=14% Similarity=-0.015 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 005990 184 AYNTACSLAEMNKYTEAEQLLLTARRIG 211 (666)
Q Consensus 184 ~~~la~~~~~~g~~~~A~~~l~~a~~~~ 211 (666)
...+|+-|...|+|+.|+.+|+.+++.-
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI 42 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQM 42 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 4567888888999999999999988765
No 309
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=36.44 E-value=36 Score=24.29 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhc
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLST 49 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~ 49 (666)
+..-+..|+.+...|+|+.|+.+|+.+++.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 455677888888888988888888888764
No 310
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.33 E-value=1.6e+02 Score=24.43 Aligned_cols=61 Identities=13% Similarity=0.051 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCC------HHHHHH-HHHH--HHHcCCHHHHHHHHHhh
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSD------EDAMRC-KVVA--LIKADNIDDALSTIQSS 80 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~a~~~-~~~~--~~~~g~~~~A~~~~~~~ 80 (666)
...-+..+..++..|+|=+|=++++.+-...+.. ...+.. ++++ ..+.|+..-|..++.++
T Consensus 32 ~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 32 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4567888888999999999999999998876544 222223 3333 35578999999888887
No 311
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=35.16 E-value=67 Score=23.63 Aligned_cols=28 Identities=18% Similarity=0.091 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005990 461 VIMQEAASFKLRHGREEDASHLFEELVK 488 (666)
Q Consensus 461 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 488 (666)
.+....+..++..|.|++|+++.+++..
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3566778889999999999988777653
No 312
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=34.63 E-value=72 Score=23.46 Aligned_cols=30 Identities=23% Similarity=0.048 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 005990 182 ELAYNTACSLAEMNKYTEAEQLLLTARRIG 211 (666)
Q Consensus 182 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 211 (666)
..+-..|..++..|+|++|+++.+++...-
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa~yL 45 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKATTYL 45 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 345567788888999999999988887654
No 313
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=34.63 E-value=51 Score=24.07 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhc
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLST 49 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~ 49 (666)
...++.++...-..|+|++|+.+|..+++.
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345678888888889999888888887753
No 314
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=33.28 E-value=1.4e+02 Score=21.70 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHhcC-----------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 005990 90 LKAYCLYRQNRLDEALESLKIQE-----------NNPATMLLKSQILYRSGEMDACVEFYQKLQKSK 145 (666)
Q Consensus 90 ~~a~~~~~~g~~~~A~~~l~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 145 (666)
..||-+|--.++......+++.. ...+.....|.-+++.++|.+|..+|+++....
T Consensus 17 ~KAYElYvfs~~~~F~~YV~kn~Lkel~~~ll~e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 17 LKAYELYIFSDYENFENYVKKEGLKIEGMELLKEKKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccccHHHHHHHHHcCcchhhHHHHhhhHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 45666666666666666665521 134556667777888999999999998886554
No 315
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=33.14 E-value=71 Score=24.95 Aligned_cols=11 Identities=18% Similarity=0.138 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 005990 437 GAAAVLDSAIK 447 (666)
Q Consensus 437 ~A~~~l~~a~~ 447 (666)
.|+.++.+|++
T Consensus 17 kAi~lv~~Ave 27 (117)
T 2cpt_A 17 KAIDLASKAAQ 27 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555543
No 316
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=33.03 E-value=2.9e+02 Score=27.00 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005990 418 MPATVATLVALKERAGD--IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVK 488 (666)
Q Consensus 418 ~~~~~~~l~~~~~~~g~--~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 488 (666)
.|..+..|+.+-...-- ...++.+|.+++............+ -+..+|.++++.+++.+|...|..+-.
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvY--PYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIY--PYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSH--HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCcc--ceeecchhhhhcchHHHHHHHHHHHHH
Confidence 55566666666654322 2258889999988766554433332 344668899999999999998887654
No 317
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=32.51 E-value=99 Score=29.09 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCC
Q 005990 19 PIEDLFTSLNRHIERSEFEQAVKVADQVLSTNP 51 (666)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p 51 (666)
.+...+..+..++..|.+++|+..|+.+|..-|
T Consensus 101 ~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~ 133 (320)
T 3mkr_B 101 DLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVP 133 (320)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 355667888888999999999999999987654
No 318
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=36.76 E-value=11 Score=40.34 Aligned_cols=53 Identities=13% Similarity=0.352 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDD 72 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~ 72 (666)
.+.++..+..++..|+|.-|.++++.++..+|+|.++...++.+|.++|.-.+
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 56788889999999999999999999999999999999999999988885543
No 319
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=30.39 E-value=5.1e+02 Score=27.36 Aligned_cols=95 Identities=11% Similarity=0.050 Sum_probs=45.3
Q ss_pred HHHHHHHH-hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccchhhhHHHHHHHHHhCCHHHHHHHHHhcCCChhHH
Q 005990 40 VKVADQVL-STNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKFTFDFNYLKAYCLYRQNRLDEALESLKIQENNPATM 118 (666)
Q Consensus 40 ~~~~~~~l-~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~~~~ 118 (666)
+.-+++.+ +..+.+..+ ....+++-.|+|+.|+.++-+. .....+++.++..+ .|-+..-..++...++.+ .
T Consensus 281 L~~LQ~~I~~yGe~~F~~--lYf~vLlLtgqFE~AI~~L~~~-~~vdAVH~AIaL~~--~gLL~~~~~lls~~~~~~--~ 353 (661)
T 2qx5_A 281 LEDFQNIIISYGPSRFSN--YYLQTLLLSGLYGLAIDYTYTF-SEMDAVHLAIGLAS--LKLFKIDSSTRLTKKPKR--D 353 (661)
T ss_dssp HHHHHHHHHHHCGGGGTT--CHHHHHHHTTCHHHHHHHHHTT-CHHHHHHHHHHHHH--TTC------------------
T ss_pred HHHHHHHHHHhhhhhhhh--HHHHHHHHHhhHHHHHHHHHhc-CchhHHHHHHHHHH--cCCccCCCcccccCCCcc--c
Confidence 34444443 334443333 4667788889999999999876 22223444444444 443332122222222211 2
Q ss_pred HHHHHHH------HHcCCHHHHHHHHHHH
Q 005990 119 LLKSQIL------YRSGEMDACVEFYQKL 141 (666)
Q Consensus 119 ~~la~~~------~~~g~~~~A~~~~~~~ 141 (666)
..++.+. ++..+..+|+++|--+
T Consensus 354 lN~arLI~~Yt~~F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 354 IRFANILANYTKSFRYSDPRVAVEYLVLI 382 (661)
T ss_dssp -CHHHHHHHHHTTTTTTCHHHHHHHHHGG
T ss_pred ccHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 2222222 4567888888887655
No 320
>2kig_A Inositol polyphosphate 5-phosphatase II isoform; OCRL, INPP5B, clathrin, endocytosis, hydrolase; NMR {Mus musculus}
Probab=27.61 E-value=33 Score=27.11 Aligned_cols=21 Identities=43% Similarity=0.918 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCccc
Q 005990 573 PKGFDPANPGPPPDPE-RWLPKRERS 597 (666)
Q Consensus 573 ~k~~~p~~~~~~pdpE-Rwlp~~~Rs 597 (666)
=++|+| ..|||| +||-+...+
T Consensus 134 CPG~sp----~tpdp~f~WLSry~~~ 155 (161)
T 2kig_A 134 CPGFDP----ETRDPEFEWLSRHTCA 155 (161)
T ss_dssp TTTTCT----TCCCCCCTTGGGCCCS
T ss_pred CCCCCC----CCCCcccchhhhhccc
Confidence 367888 589985 699865443
No 321
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=27.38 E-value=4.8e+02 Score=26.08 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=31.1
Q ss_pred HHHHHhCCHHHHHHHHHh--cCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 005990 93 YCLYRQNRLDEALESLKI--QENNPATMLLKSQILYRSGEMDACVEFYQ 139 (666)
Q Consensus 93 ~~~~~~g~~~~A~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 139 (666)
|+.-.+.+.+-|+.+..+ .|.-...+...-+-++..|+|++|..+--
T Consensus 337 yi~~~l~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA 385 (494)
T 1bpo_A 337 YITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAA 385 (494)
T ss_dssp HHHHTTCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhccCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444556677777777665 45555666666677778888888776554
No 322
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=27.23 E-value=3.9e+02 Score=26.48 Aligned_cols=30 Identities=7% Similarity=0.078 Sum_probs=19.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 005990 423 ATLVALKERAGDIDGAAAVLDSAIKWWLNA 452 (666)
Q Consensus 423 ~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~ 452 (666)
...+..+.+.+.|+.|+.+++.++..+...
T Consensus 96 ~~~i~~f~kg~~~E~ai~l~k~L~~~yE~~ 125 (436)
T 2yin_A 96 ETIIGYFDKGKMWEEAISLCKELAEQYEME 125 (436)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 344555566677777777777777666543
No 323
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=27.01 E-value=1.4e+02 Score=22.13 Aligned_cols=64 Identities=20% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHh
Q 005990 423 ATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT 489 (666)
Q Consensus 423 ~~l~~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 489 (666)
...+..++..|+|-+|-+.++.+.... .......-...+....|..+...|+. |...|.+++..
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~-~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~ 68 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKA-TGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEAR 68 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHH
No 324
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=26.84 E-value=69 Score=23.76 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhc
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLST 49 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~~ 49 (666)
..++..|...-..|+|++|+.+|..+++.
T Consensus 16 i~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 16 VAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34666777777778888888877776553
No 325
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=26.60 E-value=5.4e+02 Score=26.44 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 005990 53 DEDAMRCKVVALIKADNIDDALSTIQSS 80 (666)
Q Consensus 53 ~~~a~~~~~~~~~~~g~~~~A~~~~~~~ 80 (666)
++..| .+...++-+|.+++|..++++.
T Consensus 242 Hp~FW-~~v~~LvLRGl~~qA~~~L~~s 268 (570)
T 3f3f_C 242 TQYFW-KLLNQLVLRGLLSQAIGCIERS 268 (570)
T ss_dssp SHHHH-HHHHHHHHTTCHHHHHHHHTTT
T ss_pred CccHH-HHHHHHHHcccHHHHHHHHHhc
Confidence 46666 6677788899999999999865
No 326
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=26.21 E-value=3.6e+02 Score=24.24 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005990 198 TEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 198 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~ 258 (666)
+.|...|+.|..+....+. |... -.+.-++..-...|..+++.++|..+-++++.
T Consensus 148 ~~a~~aY~~A~~iA~~~L~-----pthP-irLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQ-----PTHP-IRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSC-----TTCH-HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCC-----CCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5788899999887754332 3221 11222333333445568999999998888764
No 327
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=26.19 E-value=84 Score=22.72 Aligned_cols=28 Identities=14% Similarity=0.068 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHh
Q 005990 21 EDLFTSLNRHIERSEFEQAVKVADQVLS 48 (666)
Q Consensus 21 ~~l~~~~~~~~~~~~~~~A~~~~~~~l~ 48 (666)
..++..+...-..|+|++|+.+|..+++
T Consensus 14 ~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 14 IELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566656666777777776666654
No 328
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=26.01 E-value=2.6e+02 Score=22.63 Aligned_cols=142 Identities=13% Similarity=0.101 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc---ch-hhhHHHHHHH
Q 005990 20 IEDLFTSLNRHIERSEFEQAVKVADQVLSTNPSDEDAMRCKVVALIKADNIDDALSTIQSSQKF---TF-DFNYLKAYCL 95 (666)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~-~~~~~~a~~~ 95 (666)
+---+..+..++-.|..++.+++..+....++-+..-|+.. -.+..-+-+--.+.++..... ++ .-.-...+|+
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~IC--NiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~ 84 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFIC--NLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECG 84 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHH--HHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeee--ecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHH
Confidence 33445677888889999999999999888765443333332 233334444444555544221 11 1112344555
Q ss_pred HHhCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCChhH--HHHHHHHHHcCChhHHHHHHHHh
Q 005990 96 YRQNRLDEALESLKIQENNPATMLLKSQILYRSGEMDACVEFYQKLQKSKIDSLE--INFVAGLISAGRASEVQKTLDSL 173 (666)
Q Consensus 96 ~~~g~~~~A~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 173 (666)
.+.|.+. ....+.-.++...|+-++--+++..++...+-+.+ +.++.+|...|+..+|.+++.++
T Consensus 85 ~~~n~~s-------------e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 85 VINNTLN-------------EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp HHTTCCC-------------HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcchH-------------HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 5555422 22222233445566666666666665444443344 66677777777777777776666
Q ss_pred hhc
Q 005990 174 RVK 176 (666)
Q Consensus 174 ~~~ 176 (666)
-+.
T Consensus 152 C~k 154 (172)
T 1wy6_A 152 CKK 154 (172)
T ss_dssp HHT
T ss_pred HHh
Confidence 543
No 329
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=25.92 E-value=3.2e+02 Score=23.63 Aligned_cols=68 Identities=12% Similarity=-0.070 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005990 180 SFELAYNTACSLAEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR 259 (666)
Q Consensus 180 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~ 259 (666)
...+|...+..+ ..+...++..+|.-+....-. ..++..|...|..+...|++.+|.++|+..+..
T Consensus 79 YLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG-------------~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 79 FLKIWIWYINLF-LSNNFHESENTFKYMFNKGIG-------------TKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSS-------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCc-------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 344555555443 234466888888877665522 334567778888888999999999999998876
Q ss_pred CC
Q 005990 260 NL 261 (666)
Q Consensus 260 ~~ 261 (666)
.-
T Consensus 145 ~A 146 (202)
T 3esl_A 145 NC 146 (202)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 330
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=25.79 E-value=3.5e+02 Score=23.94 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=41.3
Q ss_pred HHhcCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005990 192 AEMNKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 192 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~ 258 (666)
+..|+.+.|...|+.|..+....+. |... -.+..+++.-...|..+++.++|..+-++++.
T Consensus 136 ~~~g~~e~a~~aY~~A~~iA~~~L~-----pthP-irLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 136 FGLCSLEDSKKIHQDAFTLLCEHPD-----KIEQ-LPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHCGG-----GGGG-SCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHHHHhhCC-----CCCh-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3466788999999999998754322 2221 12333444444566678999999999998875
No 331
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=25.76 E-value=3.8e+02 Score=24.33 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005990 198 TEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 198 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~ 258 (666)
+.|...|+.|..+....+. |... -.+..++..-...|..+|+.++|..+-++++.
T Consensus 152 e~a~~aY~~A~~iA~~~L~-----pthP-irLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELA-----PTHP-IRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSC-----TTCH-HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-----CCCc-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5688899999988754332 2221 11222333333445568999999999888873
No 332
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=25.40 E-value=3.8e+02 Score=24.28 Aligned_cols=30 Identities=3% Similarity=0.230 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 005990 116 ATMLLKSQILYRSGEMDACVEFYQKLQKSK 145 (666)
Q Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 145 (666)
.-+..+|.+..+.++|++.+.+..+++..+
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~ 58 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEAR 58 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 455678899999999999999999998865
No 333
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.18 E-value=3e+02 Score=22.93 Aligned_cols=50 Identities=10% Similarity=0.015 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHHhcC
Q 005990 437 GAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG 491 (666)
Q Consensus 437 ~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 491 (666)
.+..+|.-+... .. -..+..++...|.++...|++.+|.++|+..++...
T Consensus 78 ~p~~if~~L~~~---~I--G~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 78 EPLDMYSYLHNQ---GI--GVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp CHHHHHHHHHHT---TS--STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHC---Cc--chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 345555544332 22 234445777778888888888888888888887663
No 334
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.45 E-value=1.2e+02 Score=23.57 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=23.2
Q ss_pred cCHHHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005990 195 NKYTEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 195 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~ 258 (666)
..+++|..++.+++.++. .|+.++|+.+|++.+.
T Consensus 17 ~~h~~AF~~Is~AL~~DE------------------------------~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDE------------------------------LGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH------------------------------HTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhh------------------------------cCCHHHHHHHHHHHHH
Confidence 345677777777777762 3777777777777653
No 335
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=23.47 E-value=94 Score=24.25 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHh
Q 005990 22 DLFTSLNRHIERSEFEQAVKVADQVLS 48 (666)
Q Consensus 22 ~l~~~~~~~~~~~~~~~A~~~~~~~l~ 48 (666)
.++.++...-..|+|++|+.+|..+++
T Consensus 20 ~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 20 DLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 355555555566777777777666654
No 336
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=23.42 E-value=4.9e+02 Score=25.49 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=45.4
Q ss_pred ChhHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005990 418 MPATVATLVALKERAG--DIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVK 488 (666)
Q Consensus 418 ~~~~~~~l~~~~~~~g--~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 488 (666)
.|..+..||.+-...- ....+..+|.+|+...+.......-+ -+..+|-++.+.+++.+|...|..+-.
T Consensus 261 YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvY--PYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 261 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIY--PYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSH--HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCccc--ceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 4555555665554322 22357789999988766544333222 344678899999999999999987753
No 337
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=23.25 E-value=4e+02 Score=23.72 Aligned_cols=55 Identities=13% Similarity=0.066 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005990 198 TEAEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 198 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~ 258 (666)
+.|...|+.|..+....+. |... -.+.-+...-...|..+|+.++|..+-++++.
T Consensus 147 e~a~~aY~~A~~iA~~~L~-----pthP-irLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELP-----PTHP-IRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSC-----TTCH-HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCC-----CCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5688899999988754332 2221 11222333333445568999999999888764
No 338
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=23.05 E-value=1.2e+02 Score=21.98 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 005990 233 AVQLAYVQQLLGNTQEAFGAYTDIIK 258 (666)
Q Consensus 233 ~~~la~~~~~~g~~~eA~~~~~~~l~ 258 (666)
+...|.-.-..|++++|+.+|..+++
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444445567899999999988874
No 339
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=22.23 E-value=1.7e+02 Score=19.17 Aligned_cols=16 Identities=19% Similarity=-0.027 Sum_probs=4.2
Q ss_pred HHHHHHHHHcCChhHH
Q 005990 390 LARAQVAAAANHPFIA 405 (666)
Q Consensus 390 ~~la~~~~~~g~~~~A 405 (666)
+.....+...|+|++|
T Consensus 44 mIr~~SLmNrG~Yq~A 59 (61)
T 3ph0_C 44 LIRLSSLMNQGDYQRA 59 (61)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHHHccchHhHh
Confidence 3333444445555444
No 340
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=21.97 E-value=2.2e+02 Score=27.20 Aligned_cols=48 Identities=19% Similarity=0.078 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhhhhccCCCCChhhHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005990 200 AEQLLLTARRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDII 257 (666)
Q Consensus 200 A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l 257 (666)
++.+|.+|+......... .-.-.|..+|-.+++.+++.||+..+..+-
T Consensus 276 ~l~L~~~AI~sa~~yY~n----------~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 276 AEELFKEAITVAKREYSD----------HHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp HHHHHHHHHHHHHHHSTT----------CCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc----------CCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 788888888877554432 222467788889999999999999998764
No 341
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=21.95 E-value=9.7e+02 Score=27.77 Aligned_cols=164 Identities=10% Similarity=0.054 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHhHHHHHHhhhhhccCC-------------------------
Q 005990 226 EIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGP------------------------- 280 (666)
Q Consensus 226 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~------------------------- 280 (666)
..++..+...+-......-+.+++.++|+.+++..|++..+......++......
T Consensus 1103 ~~~~~e~~rd~~~~~~~k~~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 1182 (1354)
T 3lxu_X 1103 ADDYAESFRDFQCSQIVKCELEMAEKIYNDVVAAHPKHLQANLLLIQNIESNQLKSQLPLTFVNAQKTSPPEAGESADKQ 1182 (1354)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHSSCCCCHHHHHHTTSCCCSSCTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHCCccHHHHHHHHHhhhhhhhhccccccccccccccccccccccccc
Q ss_pred --------CChhHHHHHhHHHhhhh---------------------------hhhhhhhHHhhcCCCHHHHHHHHHHHHH
Q 005990 281 --------KDVNDSLKKLDRIKEKD---------------------------MQNFQLARVLDLRLSPKQREAIYANRVL 325 (666)
Q Consensus 281 --------~~~~~a~~~l~~~~~~~---------------------------~~~~~~~~~l~~~~~~~q~~~~~~~~a~ 325 (666)
....+.++..+.++... .++..+.+.|..+ ...++.
T Consensus 1183 ~~~~~~~~~~~~~ii~~ad~vi~~id~~~l~~~~g~k~d~~~~a~k~k~~m~~~k~~l~~al~~k---------~~ala~ 1253 (1354)
T 3lxu_X 1183 KEDQKKVRSALERIVKLADKVIQETDSEALLSYYGLKNDTRADAAKIKTNMDKQKNTLIEALSKK---------GIAVAK 1253 (1354)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCHHHHTTTSTTCCSTHHHHCSSSCCHHHHHHHHHHHHHHHHHH---------HHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
Q ss_pred HHHHcCChHHHHHHHHhcccc-----CCCCchHHHHHHHHHHhhCChhHHHHHHHHHHhhCCChhHHHHHHHHHHHHHcC
Q 005990 326 LLLHANKMDQARELVAALPDM-----FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN 400 (666)
Q Consensus 326 ~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~la~~~~~~g 400 (666)
+.......++....|++.... ++.+.....+...-....++|..|++++.++++..|. ...+-.+++++...|
T Consensus 1254 ~~~~~~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~~--~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1254 LAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEKRT--RDHFVELAAINGALG 1331 (1354)
T ss_dssp HHHHHTCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHS
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHcC
Done!