BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005991
(666 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 131/522 (25%), Positives = 208/522 (39%), Gaps = 85/522 (16%)
Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
++Y E+ A + + L+ GLQ G R+ E L++ A + +PL
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
+ Y + AE + + C P + + + ++ VG E L P G
Sbjct: 89 LHELDYFITDAEPKIVVCDPSKRDGIAAIAAK---------VGATVETLG--PDGRG--- 134
Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
L + G S +D+A I YTSGTTG KGA L+H NL SN +
Sbjct: 135 --SLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWR 192
Query: 294 FYPSDIYMSYLPLAHIYER--ANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVP 351
F P D+ + LP+ H + A+ + G + + D K++D A + T+ VP
Sbjct: 193 FTPDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXA--RATVLXGVP 250
Query: 352 RLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGG 411
Y R+ Q+P ++ + G
Sbjct: 251 TFYTRLL--------------------------------QSP----------RLTKETTG 268
Query: 412 RVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPA 471
R SG++PL D G V+E YG TET+ S GD + G VG P
Sbjct: 269 HXRLFISGSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALPG 328
Query: 472 CEIKLVDVPEMNYTSEDQPHPRGEIC---VRGPIVFQGYYKNEVQTREVIDGDGWLHTGD 528
++ D PE + PRG+I V+GP VF+GY++ +T+ DG+ TGD
Sbjct: 329 VSARVTD-PETG-----KELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGD 382
Query: 529 IGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCL 585
+G G + I+ R K++ + G V P++IE+ V++ + G F +
Sbjct: 383 LGKIDERGYVHILGRGKDLV-ITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGV 441
Query: 586 VAIVAVDPDVLKDWAASQGIKVIYCFS-----FRANSHVIFI 622
A+V D D A +V++ F+ VIF+
Sbjct: 442 TAVVVRDKGATIDEA-----QVLHGLDGQLAKFKXPKKVIFV 478
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 122/460 (26%), Positives = 198/460 (43%), Gaps = 64/460 (13%)
Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
TY +V ++I + G+ + + L L N PE+++ A S + P
Sbjct: 90 TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149
Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234
+ + + I + ++ I + + +V+V D S+P G
Sbjct: 150 AEIAKQAKASNTKLIITEARYVDK----IKPLQNDDGVVIVCIDDNE--SVPIPEGCLRF 203
Query: 235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA----GFSL 290
+ L + S P+D+ + Y+SGTTG PKG +LTH L+++VA G +
Sbjct: 204 TELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENP 263
Query: 291 MVQFYPSDIYMSYLPLAHIYE-RANQIVSVYYGVAVGFYQGDNLKLMDDL-AVLKPTIFP 348
+ F+ D+ + LP+ HIY + + + G A+ + L+ +L K T+ P
Sbjct: 264 NLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAP 323
Query: 349 SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRER 408
VP + I K+S T + L +
Sbjct: 324 MVPPIVLAI-------AKSSETEKYDLSS------------------------------- 345
Query: 409 LGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIIS-----AIDKGDNLS 462
+R + SGA+PL ++ D + F ++ +GYGMTE +++ A + S
Sbjct: 346 ----IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKS 401
Query: 463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDG 522
G G+ E+K+VD + S +QP GEIC+RG + +GY N T E ID DG
Sbjct: 402 GACGTVVRNAEMKIVDPDTGDSLSRNQP---GEICIRGHQIMKGYLNNPAATAETIDKDG 458
Query: 523 WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 562
WLHTGDIGL L I+DR K + K +G VAP ++E
Sbjct: 459 WLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELE 497
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 148/333 (44%), Gaps = 57/333 (17%)
Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV---QFYPSDIYMSYLPLAHIY 310
+ E +A I +SG+TG PKG LTH N+++ + + Q P ++ +P H +
Sbjct: 190 RKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGF 249
Query: 311 ERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
+ + G V F + LK + D + P++ + N+
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNK---------- 299
Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
S++ ++ + + E + SG +PLS +
Sbjct: 300 ---------------------------SELLNKYDLSNLVE--------IASGGAPLSKE 324
Query: 427 VMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT 485
V + + F V +GYG+TET+ I +GD+ G G P + K++D ++
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVID---LDTK 381
Query: 486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK 545
P+ RGE+CV+GP++ +GY N T+E+ID +GWLHTGDIG + I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
++ K +G V P ++E+V + + + G
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAG 473
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 148/333 (44%), Gaps = 57/333 (17%)
Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV---QFYPSDIYMSYLPLAHIY 310
+ E +A I +SG+TG PKG LTH N+++ + + Q P ++ +P H +
Sbjct: 190 RKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGF 249
Query: 311 ERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
+ + G V F + LK + D + P++ + N+
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNK---------- 299
Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
S++ ++ + + E + SG +PLS +
Sbjct: 300 ---------------------------SELLNKYDLSNLVE--------IASGGAPLSKE 324
Query: 427 VMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT 485
V + + F V +GYG+TET+ I +GD+ G G P + K++D ++
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVID---LDTK 381
Query: 486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK 545
P+ RGE+CV+GP++ +GY N T+E+ID +GWLHTGDIG + I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
++ K +G V P ++E+V + + + G
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAG 473
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 148/333 (44%), Gaps = 57/333 (17%)
Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMV---QFYPSDIYMSYLPLAHIY 310
+ E +A I +SG+TG PKG LTH N+++ + + Q P ++ +P H +
Sbjct: 190 RKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGF 249
Query: 311 ERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
+ + G V F + LK + D + P++ + N+
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNK---------- 299
Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
S++ ++ + + E + SG +PLS +
Sbjct: 300 ---------------------------SELLNKYDLSNLVE--------IASGGAPLSKE 324
Query: 427 VMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT 485
V + + F V +GYG+TET+ I +GD+ G G P + K++D ++
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVID---LDTK 381
Query: 486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK 545
P+ RGE+CV+GP++ +GY N T+E+ID +GWLHTGDIG + I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
++ K +G V P ++E+V + + + G
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAG 473
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 124/475 (26%), Positives = 197/475 (41%), Gaps = 102/475 (21%)
Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
TY +V + + SGL G+Q+G I L+L + PE+++ LG
Sbjct: 51 TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLA----------------FLGA 94
Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234
++ A P + L+ ++ L++ E + S VK++
Sbjct: 95 SHRGAIITAAN-------PFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVM 147
Query: 235 S---------YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNV 285
+ +Q + P P+D+ + Y+SGTTG PKG +LTH LI++V
Sbjct: 148 CVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSV 207
Query: 286 A----GFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVG--------FYQGDNL 333
A G + + F+ D+ + LP+ HIY N I+ G+ VG F G L
Sbjct: 208 AQQVDGDNPNLYFHSEDVILCVLPMFHIYA-LNSIM--LCGLRVGAPILIMPKFEIGSLL 264
Query: 334 KLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP 393
L++ V +I P VP + I ++P
Sbjct: 265 GLIEKYKV---SIAPVVPPVMMSI--------------------------------AKSP 289
Query: 394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETS--- 449
D+ + +R + SG +PL ++ D ++ F ++ +GYGMTE
Sbjct: 290 D--LDKHDLSSLR--------MIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVL 339
Query: 450 --CIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGY 507
C+ A + D G G+ E+K+VD +QP GEIC+RG + +GY
Sbjct: 340 AMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP---GEICIRGDQIMKGY 396
Query: 508 YKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 562
+ T ID +GWLHTGDIG L I+DR K + K +G VAP ++E
Sbjct: 397 LNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELE 450
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 118/472 (25%), Positives = 188/472 (39%), Gaps = 91/472 (19%)
Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
TY EV + + GL G+ G R+ N L A + L P
Sbjct: 49 TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSP 108
Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234
+ Y++NHAE + + P L + + E+ +V VV+ DE P
Sbjct: 109 KEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVM---DEKAPE---------- 155
Query: 235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM--V 292
YL + P P+ + YT+GTTG PKG V +H L+ + SL+
Sbjct: 156 GYLAYEEALGEEADPVRVPE-RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT 214
Query: 293 QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPR 352
D+ + +P+ H+ N Y VG Q + P PR
Sbjct: 215 ALSEKDVVLPVVPMFHV----NAWCLPYAATLVGAKQ----------------VLPG-PR 253
Query: 353 LYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGR 412
L A + G FTA + +W L E G R
Sbjct: 254 LDP---ASLVELFDGEGVT----FTAGVPT-------------VW--LALADYLESTGHR 291
Query: 413 VRFM-----GSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCII---------SAIDKG 458
++ + G A+P S + F ++ G +V +GYG+TETS ++ ++ +
Sbjct: 292 LKTLRRLVVGGSAAPRS-LIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEE 348
Query: 459 DNLS--GHVGSPNPACEIKLVDVPEMNYTSEDQPHPR-----GEICVRGPIVFQGYYKNE 511
+ L+ G P P +++ D E +P P+ GE+ ++GP + GYY NE
Sbjct: 349 EKLTLKAKTGLPIPLVRLRVAD-------EEGRPVPKDGKALGEVQLKGPWITGGYYGNE 401
Query: 512 VQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
TR + DG+ TGDI +W G ++I DR K++ K + GE+++ +EN
Sbjct: 402 EATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWISSVDLEN 452
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 101/198 (51%), Gaps = 14/198 (7%)
Query: 416 MGSGASPLSPDVMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEI 474
+ SG +PLS +V + + F + +GYG+TET+ I +GD+ G VG P E
Sbjct: 312 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEA 371
Query: 475 KLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP 534
K+VD+ +Q RGE+CVRGP++ GY N T +ID DGWLH+GDI W
Sbjct: 372 KVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE 428
Query: 535 GGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAV 591
I+DR K++ K +G VAP ++E++ + + + G D A+V +
Sbjct: 429 DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487
Query: 592 D------PDVLKDWAASQ 603
+ + D+ ASQ
Sbjct: 488 EHGKTMTEKEIVDYVASQ 505
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 101/198 (51%), Gaps = 14/198 (7%)
Query: 416 MGSGASPLSPDVMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEI 474
+ SG +PLS +V + + F + +GYG+TET+ I +GD+ G VG P E
Sbjct: 312 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEA 371
Query: 475 KLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP 534
K+VD+ +Q RGE+CVRGP++ GY N T +ID DGWLH+GDI W
Sbjct: 372 KVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE 428
Query: 535 GGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAV 591
I+DR K++ K +G VAP ++E++ + + + G D A+V +
Sbjct: 429 DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487
Query: 592 D------PDVLKDWAASQ 603
+ + D+ ASQ
Sbjct: 488 EHGKTMTEKEIVDYVASQ 505
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 101/198 (51%), Gaps = 14/198 (7%)
Query: 416 MGSGASPLSPDVMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEI 474
+ SG +PLS +V + + F + +GYG+TET+ I +GD+ G VG P E
Sbjct: 317 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEA 376
Query: 475 KLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP 534
K+VD+ +Q RGE+CVRGP++ GY N T +ID DGWLH+GDI W
Sbjct: 377 KVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE 433
Query: 535 GGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAV 591
I+DR K++ K +G VAP ++E++ + + + G D A+V +
Sbjct: 434 DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 492
Query: 592 D------PDVLKDWAASQ 603
+ + D+ ASQ
Sbjct: 493 EHGKTMTEKEIVDYVASQ 510
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 108/448 (24%), Positives = 187/448 (41%), Gaps = 85/448 (18%)
Query: 181 VNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK-LISYLQL 239
+N ++ +F + L +L+ ++P + I+++ K ++ G + + +++
Sbjct: 123 MNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY-------QGFQSMYTFVTS 175
Query: 240 QSQGCSSPQPFCPP---KPEDIATICYTSGTTGTPKGAVLTHGNL---ISNVAGFSLMVQ 293
+ F P + + IA I +SG+TG PKG L H L S+ Q
Sbjct: 176 HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFGNQ 235
Query: 294 FYPSDIYMSYLPLAH---IYERANQIVSVYYGVAV-GFYQGDNLKLMDDL----AVLKPT 345
P +S +P H ++ ++S + V + F + L+ + D A+L PT
Sbjct: 236 IAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPT 295
Query: 346 IFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKI 405
+F + + S + D+ + +
Sbjct: 296 LFSFLAK-----------------------------------------STLIDKYDLSNL 314
Query: 406 RERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGH 464
E + SG +PLS +V + + F + +GYG+TET+ I KGD+ G
Sbjct: 315 HE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPKGDDKPGA 366
Query: 465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWL 524
VG P E K+VD+ +Q RGE+ VRGP++ GY N T +ID DGWL
Sbjct: 367 VGKVVPFFEAKVVDLDTGKTLGVNQ---RGELSVRGPMIMSGYVNNPEATNALIDKDGWL 423
Query: 525 HTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSF 581
H+GDI W I+DR K++ K +G VAP ++E++ + + + G D
Sbjct: 424 HSGDIAYWDEDEHFFIVDRLKSLIKY-KGCQVAPAELESILLQHPNIFDAGVAGLPDDDA 482
Query: 582 NSCLVAIVAVD------PDVLKDWAASQ 603
A+V ++ + D+ ASQ
Sbjct: 483 GELPAAVVVLEHGKTMTEKEIVDYVASQ 510
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/402 (22%), Positives = 168/402 (41%), Gaps = 67/402 (16%)
Query: 189 IFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQ 248
+FC + L +L ++P + IV++ +++++ + S+++ +
Sbjct: 160 VFCSKRALQKILGVQKKLPIIQKIVILDSREDYM------GKQSMYSFIESHLPAGFNEY 213
Query: 249 PFCPP---KPEDIATICYTSGTTGTPKGAVLTHGNL---ISNVAGFSLMVQFYPSDIYMS 302
+ P + A I +SG+TG PKG LTH N+ S+ Q P ++
Sbjct: 214 DYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILT 273
Query: 303 YLPLAHIYERANQIVSVYYGVAV----GFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIY 358
+P H + + + G + F + L+ + D + + P++ + +
Sbjct: 274 VIPFHHGFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAK-- 331
Query: 359 AGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGS 418
S + D+ + + E + S
Sbjct: 332 -----------------------------------STLVDKYDLSNLHE--------IAS 348
Query: 419 GASPLSPDVMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPACEIKL 476
G +PL+ +V + + F + +GYG+TET+ I +G D+ G G P K+
Sbjct: 349 GGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVVPFFSAKI 408
Query: 477 VDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGG 536
VD+ +Q RGE+CV+GP++ +GY N T +ID DGWLH+GDI + G
Sbjct: 409 VDLDTGKTLGVNQ---RGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDG 465
Query: 537 RLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
I+DR K++ K +G V P ++E++ + F+ + G
Sbjct: 466 YFFIVDRLKSLIKY-KGYQVPPAELESILLQHPFIFDAGVAG 506
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 142/353 (40%), Gaps = 59/353 (16%)
Query: 256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER--A 313
+D+A I YTSGTTG GA+L+H NL SN +F P D+ + LP+ H + A
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
+ + G + D ++D +A + T+ VP Y R+
Sbjct: 215 SNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRLL--------------- 257
Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKV 433
Q+P ++ G +R SG++PL D
Sbjct: 258 -----------------QSP----------RLTXETTGHMRLFISGSAPLLADTHREWSA 290
Query: 434 CFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR 493
G V+E YGMTET+ S GD + G VG P ++ D PE PR
Sbjct: 291 XTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD-PETG-----XELPR 344
Query: 494 GEIC---VRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL 550
G+I V GP VF GY++ T DG+ TGD+G G + I+ R ++ +
Sbjct: 345 GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLV-I 403
Query: 551 AQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAVDPDVLKDWA 600
G V P +IE+ V++ + G F + A+V D D A
Sbjct: 404 TGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDXGATIDEA 456
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 134/328 (40%), Gaps = 56/328 (17%)
Query: 256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER--A 313
+D+A I YTSGTTG GA+L+H NL SN +F P D+ + LP+ H + A
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
+ + G + D ++D +A + T+ VP Y R+
Sbjct: 215 SNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRLL--------------- 257
Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKV 433
Q+P ++ G +R SG++PL D
Sbjct: 258 -----------------QSP----------RLTXETTGHMRLFISGSAPLLADTHREWSA 290
Query: 434 CFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR 493
G V+E YGMTET+ S GD + G VG P ++ D PE PR
Sbjct: 291 XTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD-PETG-----XELPR 344
Query: 494 GEIC---VRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL 550
G+I V GP VF GY++ T DG+ TGD+G G + I+ R ++ +
Sbjct: 345 GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLV-I 403
Query: 551 AQGEYVAPEKIENVYAKCKFVLQCFIYG 578
G V P +IE+ V++ + G
Sbjct: 404 TGGFNVYPXEIESEIDAMPGVVESAVIG 431
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 134/328 (40%), Gaps = 56/328 (17%)
Query: 256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER--A 313
+D+A I YTSGTTG GA+L+H NL SN +F P D+ + LP+ H + A
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
+ + G + D ++D +A + T+ VP Y R+
Sbjct: 215 SNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRLL--------------- 257
Query: 374 KLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKV 433
Q+P ++ G +R SG++PL D
Sbjct: 258 -----------------QSP----------RLTXETTGHMRLFISGSAPLLADTHREWSA 290
Query: 434 CFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPR 493
G V+E YGMTET+ S GD + G VG P ++ D PE PR
Sbjct: 291 XTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD-PETGXEL-----PR 344
Query: 494 GEIC---VRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKL 550
G+I V GP VF GY++ T DG+ TGD+G G + I+ R ++ +
Sbjct: 345 GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLV-I 403
Query: 551 AQGEYVAPEKIENVYAKCKFVLQCFIYG 578
G V P +IE+ V++ + G
Sbjct: 404 TGGFNVYPXEIESEIDAMPGVVESAVIG 431
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 138/339 (40%), Gaps = 49/339 (14%)
Query: 257 DIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI 316
D A + YTSGTTG PKGAV+ L + + + Q+ D+ + LPL H++ I
Sbjct: 156 DPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGI 215
Query: 317 VS-VYYGVAVG----FYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTL 371
+ + G +V F + ++D A T+ VP +Y+RI + A L
Sbjct: 216 LGPLRRGGSVRHLGRFSTEGAARELNDGA----TMLFGVPTMYHRI----AETLPADPEL 267
Query: 372 REKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFL 431
+ L A R + SG++ L + +
Sbjct: 268 AKALAGA-----------------------------------RLLVSGSAALPVHDHERI 292
Query: 432 KVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPH 491
G +V+E YGMTET S G+ +G VG P P E++LV+ + D
Sbjct: 293 AAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDG-E 351
Query: 492 PRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLA 551
GEI VRGP +F Y T DG+ TGD+ + P G ++I+ RK +
Sbjct: 352 SVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKS 411
Query: 552 QGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVA 590
G + +IEN + V + + G+ IVA
Sbjct: 412 GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVA 450
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 109/483 (22%), Positives = 190/483 (39%), Gaps = 68/483 (14%)
Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
MTY +++A L G+ KG R+ L + N E+ + + + ++VP+ L
Sbjct: 44 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
V ++++ + + + I PS +I + + + ++ G
Sbjct: 104 APEVSFILSDSGSKVV-------------IYGAPSAPVIDAIRAQADPPGTVTDWIGADS 150
Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
++ +L+S P C +D I YTSGTTG PKG V TH ++ S + ++ +
Sbjct: 151 LAE-RLRSAAADEPAVEC--GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 207
Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYGVA-VGFYQGDNLKLMDDLAVLKPTIFPSVPR 352
D + LP+ H+ I S GV + Q D K+ + + I +VP
Sbjct: 208 VRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPA 267
Query: 353 LYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGR 412
+ N + Q P + E
Sbjct: 268 ILNFMR--------------------------------QVP----------EFAELDAPD 285
Query: 413 VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPAC 472
R+ +G +P+ P+ + + +V++GY +TE SC + ++ GS A
Sbjct: 286 FRYFITGGAPM-PEALIKIYAAKNIEVVQGYALTE-SCGGGTLLLSEDALRKAGSAGRAT 343
Query: 473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLW 532
DV + H GE+ ++ I+ + Y+ TR+ D +GW TGDIG
Sbjct: 344 --MFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEI 400
Query: 533 LPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIV 589
G L I DR K++ ++ GE V P +IE+V V + + G + + AIV
Sbjct: 401 DDEGYLYIKDRLKDMI-ISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV 459
Query: 590 AVD 592
D
Sbjct: 460 VAD 462
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 136/323 (42%), Gaps = 44/323 (13%)
Query: 256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQ 315
+DIA Y+SG+TG PKG V TH NL ++ +++Y P+ I E N
Sbjct: 183 DDIAFWLYSSGSTGKPKGTVHTHANL------------YWTAELYAK--PILGIAE--ND 226
Query: 316 IVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKL 375
+V + + G+ L FP + G T + A + +
Sbjct: 227 VVFSAAKLFFAYGLGNGLT------------FP--------LSVGATAILMAERPTADAI 266
Query: 376 FTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF 435
F A + + V P+ + LV + R +R S L ++ + F
Sbjct: 267 F--ARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF 324
Query: 436 GCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGE 495
GC++++G G TE I + G G G P P EI+L D E + D G+
Sbjct: 325 GCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRD--EAGHAVPDG--EVGD 380
Query: 496 ICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY 555
+ ++GP Y+ N ++R G+ W+ +GD LP G R ++ K++ G+Y
Sbjct: 381 LYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPNGCYVYAGRSDDMLKVS-GQY 438
Query: 556 VAPEKIENVYAKCKFVLQCFIYG 578
V+P ++E V + VL+ + G
Sbjct: 439 VSPVEVEMVLVQHDAVLEAAVVG 461
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/418 (21%), Positives = 161/418 (38%), Gaps = 64/418 (15%)
Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
MTY +++A L G+ KG R+ L + N E+ + + + ++VP+ L
Sbjct: 30 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 89
Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
V ++++ + + + I PS +I + + + ++ G
Sbjct: 90 APEVSFILSDSGSKVV-------------IYGAPSAPVIDAIRAQADPPGTVTDWIGADS 136
Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQ 293
++ +L+S P C +D I YTSGTTG PKG V TH ++ S + ++ +
Sbjct: 137 LAE-RLRSAAADEPAVEC--GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 193
Query: 294 FYPSDIYMSYLPLAHIYERANQIVSVYYGVA-VGFYQGDNLKLMDDLAVLKPTIFPSVPR 352
D + LP+ H+ I S GV + Q D K+ + + I +VP
Sbjct: 194 VRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPA 253
Query: 353 LYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGR 412
+ N + Q P + E
Sbjct: 254 ILNFMR--------------------------------QVP----------EFAELDAPD 271
Query: 413 VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPAC 472
R+ +G +P+ P+ + + +V++GY +TE SC + ++ GS A
Sbjct: 272 FRYFITGGAPM-PEALIKIYAAKNIEVVQGYALTE-SCGGGTLLLSEDALRKAGSAGRAT 329
Query: 473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIG 530
DV + H GE+ ++ I+ + Y+ TR+ D +GW TGDIG
Sbjct: 330 --MFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIG 384
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 93/392 (23%), Positives = 156/392 (39%), Gaps = 71/392 (18%)
Query: 188 AIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSP 247
A+F LNT F++E S+ ++ ++ EH LQ
Sbjct: 133 ALFSGDDFLNT---FVTEHSSIRVVQLLNDSGEH----------------NLQDAINHPA 173
Query: 248 QPF-CPPKPED-IATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLP 305
+ F P P D +A + GTTGTPK TH + +V + QF Y+ +P
Sbjct: 174 EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIP 233
Query: 306 LAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAV 365
AH Y ++ G F G + L D + FP + + + A + AV
Sbjct: 234 AAHNYAMSSP------GSLGVFLAGGTVVLAADPSAT--LCFPLIEKHQVNVTALVPPAV 285
Query: 366 KASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSP 425
L+ QA++ G++ +++ ++ + G + LS
Sbjct: 286 S--------LWL-------QALIEGESRAQL--------------ASLKLLQVGGARLSA 316
Query: 426 DVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV-GSPN-PACEIKLVDVPEMN 483
+ + GCQ+ + +GM E + +D H G P P E+ + D
Sbjct: 317 TLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVAD----- 371
Query: 484 YTSEDQPHPRGEI---CVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540
+E P P+GE+ RGP F+GYYK+ D +G+ +GD+ P G + +
Sbjct: 372 --AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITV 429
Query: 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVL 572
R+K+ GE +A E+IEN+ + V+
Sbjct: 430 QGREKDQINRG-GEKIAAEEIENLLLRHPAVI 460
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 104/459 (22%), Positives = 177/459 (38%), Gaps = 73/459 (15%)
Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
+Y E+ + +G G+Q+ R+ + L N E+ V A + V +
Sbjct: 52 SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRS 111
Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTL------LSFISEIPSVHLIVVVGGKDEHLPSLPST 228
+ Y AE A + IP + S++P++ I+V G +E LP
Sbjct: 112 SEITYFCEFAEA-AAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLP----- 165
Query: 229 SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
L ++ P+ K D+A + + G+TG K TH + I ++
Sbjct: 166 -------LEDLHTEPVKLPEV----KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRS 214
Query: 289 SLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFP 348
+ S +Y++ LP+AH Y ++ GV Y G + VL P+ P
Sbjct: 215 VEVCWLDHSTVYLAALPMAHNYPLSSP------GVLGVLYAGGRV-------VLSPSPSP 261
Query: 349 --SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIR 406
+ P L R IT V + + A +S++ + S Q
Sbjct: 262 DDAFP-LIEREKVTITALVPPLAMV----WMDAASSRRDDLSSLQV-------------- 302
Query: 407 ERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV- 465
+ G + S + +K FGC + + +GM E + +D + + +
Sbjct: 303 ---------LQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQ 353
Query: 466 GSP-NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWL 524
G P +P E ++ D ++ + +P G + RGP +GYYK E DG+
Sbjct: 354 GKPMSPYDESRVWD----DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFY 409
Query: 525 HTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
TGDI G + + R K+ GE VA E++EN
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRG-GEKVAAEEVEN 447
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/480 (22%), Positives = 193/480 (40%), Gaps = 84/480 (17%)
Query: 118 EVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAV 177
E+ K++ SG+ G++KG +G+ + N +++ +A + VP+ +
Sbjct: 57 EICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFEL 116
Query: 178 KYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL 237
++++N +E + L + E V + VVGG+ L + SG + +
Sbjct: 117 EHILNDSEA-TTLVVHSXLYENFKPVLEKTGVERVFVVGGEVNSLSEV-XDSGSEDFENV 174
Query: 238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPS 297
++ + ED+A I YT GTTG PKG LTH NL +N ++
Sbjct: 175 KVNPE-------------EDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHX 221
Query: 298 DIYMSYLPLAHIYERANQIVSVYYG---VAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLY 354
D + P H E + V G V G + + L +++ K T +VP
Sbjct: 222 DTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQE--XLAENIEKYKGTFSWAVPPAL 279
Query: 355 NRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVR 414
N + N +++S K + +Y ++
Sbjct: 280 NV----LVNTLESSN----KTYDWSY--------------------------------LK 299
Query: 415 FMGSGASPLSPDVMDFL-----KVCFGCQVMEG--YGMTETSCIISA-----IDKGDNLS 462
+GA P++P +++ L + C ++ +G TE ++ +DK S
Sbjct: 300 VFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVTTNPPLRLDK----S 355
Query: 463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI---- 518
G P E+K++ + + + GEI +RGP +F+GY+K E + +E
Sbjct: 356 TTQGVPXSDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKENQECWWYDE 412
Query: 519 DGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG 578
G + TGD+G G L DR K + K +G +AP ++E + K + V + G
Sbjct: 413 KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLXKHEAVXDVAVIG 471
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 121/526 (23%), Positives = 193/526 (36%), Gaps = 114/526 (21%)
Query: 122 ARKEIGSG-LLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG------- 173
AR E G+ LL L+KG R+ L E++ AC ++VPL G
Sbjct: 56 ARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXGVGQRDSW 115
Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKL 233
++ ++ + AI + L + + + P +H++ +LP
Sbjct: 116 SAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVL-----SHAWFKALPEAD---- 166
Query: 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL-MV 292
+ LQ P P DIA + YTSG+T P+G ++TH + +N+ S +
Sbjct: 167 ---VALQR-----------PVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGI 212
Query: 293 QFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPR 352
+ P D +S+LP H +V D L+ D F P
Sbjct: 213 KLRPGDRCVSWLPFYH----DXGLVGFLLTPVATQLSVDYLRTQD---------FAXRPL 259
Query: 353 LYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGR 412
+ ++ + V + +L N K A + W
Sbjct: 260 QWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLA----ELDLSCW--------------- 300
Query: 413 VRFMGSGASPLSPDVMDFLKVCFGCQVMEG------YGMTETSCIISAIDKG-------- 458
R G GA P+S + + CF + YG+ E + +S D+
Sbjct: 301 -RVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGLAENALAVSFSDEASGVVVNEV 359
Query: 459 --DNLSGHVGSPNPACEIKLVD--------VPEMNYTSEDQP------HPRGEICVRGPI 502
D L + P E + V +PE ++ G IC+ GP
Sbjct: 360 DRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGXPVAERVVGHICISGPS 419
Query: 503 VFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG-----GRLK--IIDRKKNIFKLAQGEY 555
+ GY+ ++V E I GWL TGD+G L G GR+K II R +NI+ EY
Sbjct: 420 LXSGYFGDQVSQDE-IAATGWLDTGDLGYLLDGYLYVTGRIKDLIIIRGRNIWP-QDIEY 477
Query: 556 VAPEK--------IENVYAKCKFVL--QCFIYGDSFNSCLVAIVAV 591
+A ++ I V A+ K +L QC I + L+ +A
Sbjct: 478 IAEQEPEIHSGDAIAFVTAQEKIILQIQCRISDEERRGQLIHALAA 523
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 103/459 (22%), Positives = 175/459 (38%), Gaps = 73/459 (15%)
Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
+Y E+ + +G G+Q+ R+ + L N E+ V A + V +
Sbjct: 52 SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRS 111
Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTL------LSFISEIPSVHLIVVVGGKDEHLPSLPST 228
+ Y AE A + IP + S++P++ I+V G +E LP
Sbjct: 112 SEITYFCEFAEA-AAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLP----- 165
Query: 229 SGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF 288
L ++ P+ K D+A + + G+TG K TH + I ++
Sbjct: 166 -------LEDLHTEPVKLPEV----KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRS 214
Query: 289 SLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFP 348
+ S +Y++ LP AH Y ++ GV Y G + VL P+ P
Sbjct: 215 VEVCWLDHSTVYLAALPXAHNYPLSSP------GVLGVLYAGGRV-------VLSPSPSP 261
Query: 349 --SVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIR 406
+ P L R IT V + + A +S++ + S Q
Sbjct: 262 DDAFP-LIEREKVTITALVPPLAXV----WXDAASSRRDDLSSLQV-------------- 302
Query: 407 ERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV- 465
+ G + S + +K FGC + + +G E + +D + + +
Sbjct: 303 ---------LQVGGAKFSAEAARRVKAVFGCTLQQVFGXAEGLVNYTRLDDPEEIIVNTQ 353
Query: 466 GSP-NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWL 524
G P +P E ++ D ++ + +P G + RGP +GYYK E DG+
Sbjct: 354 GKPXSPYDESRVWD----DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFY 409
Query: 525 HTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
TGDI G + + R K+ GE VA E++EN
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRG-GEKVAAEEVEN 447
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 112/518 (21%), Positives = 200/518 (38%), Gaps = 91/518 (17%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
K T+ ++ + + + HG+ KG + L L +R ++ I+VP
Sbjct: 85 KIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHM 144
Query: 172 LGPDAVKYVVNHAEIEAIFCI-----PQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLP 226
L + Y + A ++ I CI P+ ++ + +IP VGG
Sbjct: 145 LKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKK--AKVGGD-------V 195
Query: 227 STSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA 286
+ L+ S P K EDI + ++SGT G PK ++ H N +
Sbjct: 196 LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPK--MVEHDN--TYPL 251
Query: 287 GFSLMVQFYPS--DIYMSYLPLAHIYERA------NQIVSVYYGVAVGFYQGDNLK---L 335
G L +++ + D + Y + + Q ++ G AV Y D + +
Sbjct: 252 GHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIA---GCAVFVYDYDRFEAKNM 308
Query: 336 MDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK 395
++ + T F + P +Y + ++E L +++ K A+V+G+
Sbjct: 309 LEKASKYGVTTFCAPPTIYRFL-------------IKEDLSHYNFSTLKYAVVAGE---- 351
Query: 396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAI 455
PL+P+V + G ++MEG+G TET I+
Sbjct: 352 --------------------------PLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATF 385
Query: 456 DKGDNLSGHVGSPNPACEIKLVDVP-EMNYTSEDQPHPRGEICVR----GPIVFQGYYKN 510
+ G +G P P +I+L+D + E+ GEI + P+ +Y
Sbjct: 386 PWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEE-----GEIVINTMEGKPVGLFVHYGK 440
Query: 511 EVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKF 570
+ + E DG+ HTGD+ G L + R +I K + G V P ++E+ +
Sbjct: 441 DPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTS-GYKVGPFEVESALIQHPA 499
Query: 571 VLQCFIYG--DSFNSCLVAIVAVDPDVLKDWAASQGIK 606
VL+C I G D ++ V + KD+ S +K
Sbjct: 500 VLECAITGVPDPVRGQVIKATIV---LTKDYTPSDSLK 534
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/335 (22%), Positives = 140/335 (41%), Gaps = 60/335 (17%)
Query: 251 CPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIY 310
P K D+A + YTSGTTG PKG +L H G S + F+ + + ++
Sbjct: 177 VPSKSTDLAYVIYTSGTTGNPKGTMLEH-------KGISNLKVFFENSLNVTE------K 223
Query: 311 ERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGT 370
+R Q S+ + SV ++ + G + + T
Sbjct: 224 DRIGQFASISFDA-------------------------SVWEMFMALLTGASLYIILKDT 258
Query: 371 LREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDF 430
+ + + Y ++K+ V P+ V + ER+ ++ + + S SP +++
Sbjct: 259 INDFVKFEQYINQKEITVITLPPT-----YVVHLDPERILS-IQTLITAGSATSPSLVNK 312
Query: 431 LKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGH---VGSPNPACEIKLVDVPEMNYTSE 487
K + YG TET+ + GH +G+P +I +VD + S
Sbjct: 313 WKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSV 369
Query: 488 DQPHPRGEICVRGPIVFQGYYKN-EVQTREVID-----GDGWLHTGDIGLWLPGGRLKII 541
+ GE+C+ G + +GY+K E+ +++ +D G+ TGD WL G ++ +
Sbjct: 370 GEA---GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYL 426
Query: 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI 576
R N K+ +G V E++E++ K ++ + +
Sbjct: 427 GRIDNQVKI-RGHRVELEEVESILLKHMYISETAV 460
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 121/493 (24%), Positives = 178/493 (36%), Gaps = 93/493 (18%)
Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLI----VDHACSAYSYISVPLY 169
++Y E+ I L HG KG + LY E +I V A +AY +P+
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAY----LPVD 545
Query: 170 DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTS 229
L D + Y++ + A C+ + E LP T
Sbjct: 546 PKLPEDRISYMLADS---AAACL--------------------LTHQEMKEQAAELPYT- 581
Query: 230 GVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS 289
G L Q + + +S P P D A I YTSGTTG PKG + TH N+ V
Sbjct: 582 GTTLFIDDQTRFEEQAS-DPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVD 640
Query: 290 LMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPS 349
M F D ++S VS Y A F ++ L +
Sbjct: 641 YMA-FSDQDTFLS--------------VSNYAFDAFTFDFYASMLNAARLIIADEHTLLD 685
Query: 350 VPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERL 409
RL + I N + A+ L L A + K
Sbjct: 686 TERLTDLILQENVNVMFATTALFNLLTDAGEDWMK------------------------- 720
Query: 410 GGR-VRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAI---DKGDNLSG-H 464
G R + F G AS P V L++ +++ YG TE + +A D D++S
Sbjct: 721 GLRCILFGGERAS--VPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLP 778
Query: 465 VGSPNPACEIKLVDVPEMNYTSEDQPH-PRGEICVRGPIVFQGYYKNEVQTREVI----- 518
+G P I V +N S+ QP GE+C+ G V +GY T+E
Sbjct: 779 IGKP-----ISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPF 833
Query: 519 -DGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY 577
G+ TGD+ WLP G ++ R + K+ +G + E+IE + V +
Sbjct: 834 KPGETLYRTGDLARWLPDGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVV 892
Query: 578 GDSFNSCLVAIVA 590
D S +I A
Sbjct: 893 ADRHESGDASINA 905
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 97/442 (21%), Positives = 170/442 (38%), Gaps = 79/442 (17%)
Query: 172 LGPDAVKYVVNHAEIEAIFCIPQTLNTLL--SFISEI---PSVHLIVVVGGKDEHLPSLP 226
+ P++ V+ + + +P LN L + ++E+ + V+ G+
Sbjct: 60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ 119
Query: 227 STSGVKLISYLQLQSQGCSSPQPFCPP------KPEDIATICYTSGTTGTPKGAVLTHGN 280
S SG ++I L G P + PP +P A I YTSGTTG PK A++
Sbjct: 120 SGSGARIIFLGDLVRDG--EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177
Query: 281 LISNVAGFSLMVQFYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKL-MD 337
S V S V ++ + +PL H+ VGF+ L +D
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD 222
Query: 338 DLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW 397
V+ P V A ++++ T+ + + +
Sbjct: 223 GTYVVVEEFRP----------------VDALQLVQQEQVTSLFATPTHLDALAAAAAHAG 266
Query: 398 DRLVFNKIRERLGGRVRFMGSGASPLSPD-VMDFLKVCFGCQVMEGYGMTETSCIISAID 456
L + +R V F G+ PD V++ + + + GYG TE ++++
Sbjct: 267 SSLKLDSLRH-----VTFAGA----TMPDAVLETVHQHLPGEKVNGYGTTEA---MNSLY 314
Query: 457 KGDNLSGHVGSPNPACEIKLV----DVPEMNYTSEDQPHPRGEICVRGP-IVFQGYYKNE 511
+G +P E+++V V E+ E+ GE+ V F GY
Sbjct: 315 MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE-----GELIVAASDSAFVGYLNQP 369
Query: 512 VQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFV 571
T E + DGW T D+ +W P G ++I+ R ++ ++ GE + P +IE V V
Sbjct: 370 QATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGV 427
Query: 572 LQCFI-------YGDSFNSCLV 586
+ + +G S +C+V
Sbjct: 428 TEVVVIGLADQRWGQSVTACVV 449
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 22/161 (13%)
Query: 434 CFGCQVMEGYGMTETSCIISAIDKGD-NLSGHVGSP-NPACEIKLVDVPEMNYTSEDQPH 491
C++ + +GM E + +D D + G P + EIK+VD + +
Sbjct: 330 VLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVD-------EQYREV 382
Query: 492 PRGEI---CVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIF 548
P GEI RGP F GYY++ +V D D + ++GD+ P G L+++ R K+
Sbjct: 383 PEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQI 442
Query: 549 KLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFNSCLVAIV 589
GE +A E+IE K +L ++ + ++ LVAIV
Sbjct: 443 NRG-GEKIASEEIE------KLIL---LHPEVMHAALVAIV 473
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 31/214 (14%)
Query: 424 SPDVMD-FLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEM 482
+P+ ++ F C +G +ETS + S + G P + +VD
Sbjct: 282 TPETIERFEATCPNATFWATFGQSETSGL-STFAPYRDRPKSAGRPLFWRTVAVVD---- 336
Query: 483 NYTSEDQPHPRGE---ICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK 539
+ED+P P GE I +RGP VF+GY+ N T+ +GW HTGD+G + G L
Sbjct: 337 ---AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDADGYLF 392
Query: 540 IIDR--KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYG---DSFNSCLVAIVAVDP- 593
R +K + K GE V P ++E + + + G ++ + A+ P
Sbjct: 393 YAGRAPEKELIKTG-GENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPG 451
Query: 594 -----DVLKDWAASQGIKVIYCFSFRANSHVIFI 622
D L ++ AS ++ HV+F+
Sbjct: 452 ESIAADALAEFVAS------LIARYKKPKHVVFV 479
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 83/207 (40%), Gaps = 36/207 (17%)
Query: 114 MTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLG 173
+T+ + A + + SGLL G+ G R+ + N E + + A + I +P+ L
Sbjct: 32 LTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLN 91
Query: 174 PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEH---LPSLPSTSG 230
D + +V+ PSV VV G D LPS G
Sbjct: 92 ADEIAFVLGDGA---------------------PSV----VVAGTDYRDIVAGVLPSLGG 126
Query: 231 VKLISYLQLQS------QGCSSPQPFCPPK--PEDIATICYTSGTTGTPKGAVLTHGNLI 282
VK + S + +S PF P+ D I +T+ G P+GA+++ GNL+
Sbjct: 127 VKKAYAIGDGSGPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLL 186
Query: 283 SNVAGFSLMVQFYPSDIYMSYLPLAHI 309
+ + +D+ + LPL H+
Sbjct: 187 IAQSSLVDAWRLTEADVNLGMLPLFHV 213
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 96/442 (21%), Positives = 169/442 (38%), Gaps = 79/442 (17%)
Query: 172 LGPDAVKYVVNHAEIEAIFCIPQTLNTLL--SFISEI---PSVHLIVVVGGKDEHLPSLP 226
+ P++ V+ + + +P LN L + ++E+ + V+ G+
Sbjct: 60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ 119
Query: 227 STSGVKLISYLQLQSQGCSSPQPFCPP------KPEDIATICYTSGTTGTPKGAVLTHGN 280
S SG ++I L G P + PP +P A I YTSGTTG PK A++
Sbjct: 120 SGSGARIIFLGDLVRDG--EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177
Query: 281 LISNVAGFSLMVQFYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKL-MD 337
S V S V ++ + +PL H+ VGF+ L +D
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD 222
Query: 338 DLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW 397
V+ P V A ++++ T+ + + +
Sbjct: 223 GTYVVVEEFRP----------------VDALQLVQQEQVTSLFATPTHLDALAAAAAHAG 266
Query: 398 DRLVFNKIRERLGGRVRFMGSGASPLSPD-VMDFLKVCFGCQVMEGYGMTETSCIISAID 456
L + +R V F G+ PD V++ + + + YG TE ++++
Sbjct: 267 SSLKLDSLRH-----VTFAGA----TMPDAVLETVHQHLPGEKVNAYGTTEA---MNSLY 314
Query: 457 KGDNLSGHVGSPNPACEIKLV----DVPEMNYTSEDQPHPRGEICVRGP-IVFQGYYKNE 511
+G +P E+++V V E+ E+ GE+ V F GY
Sbjct: 315 MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE-----GELIVAASDSAFVGYLNQP 369
Query: 512 VQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFV 571
T E + DGW T D+ +W P G ++I+ R ++ ++ GE + P +IE V V
Sbjct: 370 QATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGV 427
Query: 572 LQCFI-------YGDSFNSCLV 586
+ + +G S +C+V
Sbjct: 428 TEVVVIGLADQRWGQSVTACVV 449
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 119/517 (23%), Positives = 196/517 (37%), Gaps = 121/517 (23%)
Query: 115 TYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGP 174
TY ++ K I + L G + G R+ L + C I+VP+Y P
Sbjct: 42 TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIY----P 97
Query: 175 DAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234
A + +++ A+ P + + I + + + L + P + I
Sbjct: 98 PAQEKLLDKAQRIVTNSKPVIVLXIADHIKKFTA-----------DELNTNPKFLKIPAI 146
Query: 235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF 294
+ ++ SS QP K DIA + YTSG+T PKG ++H NL+ N+ + F
Sbjct: 147 ALESIELNRSSSWQP-TSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLN--KIFTSF 203
Query: 295 YPSD--IYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPR 352
+ +D I S+LP H D ++ + P
Sbjct: 204 HXNDETIIFSWLPPHH-----------------------------DXGLIGCILTP---- 230
Query: 353 LYNRIYAGITNAVKAS--GTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLG 410
IY GI A+ S L+ L + +K +A +SG +P+ +D V +IRE
Sbjct: 231 ----IYGGI-QAIXXSPFSFLQNPLSWLKHITKYKATISG-SPNFAYDYCV-KRIREEKK 283
Query: 411 GRVRFMG-----SGASPLSPDVMD-----FLKVCFGCQVM-EGYGMTETSCIISAIDKG- 458
+ +GA P+ + + F + F + YG+ E + +++ G
Sbjct: 284 EGLDLSSWVTAFNGAEPVREETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGS 343
Query: 459 ---------------------DNLSGH---VGSPNPACEIKLVDVPEMNYTSEDQPHPRG 494
DN G V S NP E+K++D + DQ G
Sbjct: 344 SYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQ---VG 400
Query: 495 EICVRGPIVFQGYYKNEVQTREVIDGD--------GWLHTGDIGLWLPGGRLKIIDRKKN 546
EI V+ V +GY+ +TR G +L TGD+G +L L + R K+
Sbjct: 401 EIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLG-FLHENELYVTGRIKD 459
Query: 547 IFKLAQGEYVAPEKIE---------NVYAKC-KFVLQ 573
+ + G+ P+ IE +V KC FV+Q
Sbjct: 460 LI-IIYGKNHYPQDIEFSLXHSPLHHVLGKCAAFVIQ 495
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 143/382 (37%), Gaps = 74/382 (19%)
Query: 227 STSGVKLISYLQLQSQGCSSPQPFCPP------KPEDIATICYTSGTTGTPKGAVLTHGN 280
S SG ++I L G P + PP +P A I YTSGTTG PK A++
Sbjct: 120 SGSGARIIFLGDLVRDG--EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177
Query: 281 LISNVAGFSLMVQFYPS--DIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKL-MD 337
S V S V ++ + PL H+ VGF+ L +D
Sbjct: 178 AESRVLFXSTQVGLRHGRHNVVLGLXPLYHV---------------VGFFAVLVAALALD 222
Query: 338 DLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW 397
V+ P V A ++++ T+ + + +
Sbjct: 223 GTYVVVEEFRP----------------VDALQLVQQEQVTSLFATPTHLDALAAAAAHAG 266
Query: 398 DRLVFNKIRERLGGRVRFMGSGASPLSPD-VMDFLKVCFGCQVMEGYGMTETSCIISAID 456
L + +R V F G+ PD V++ + + + YG TE +++
Sbjct: 267 SSLKLDSLRH-----VTFAGA----TXPDAVLETVHQHLPGEKVNIYGTTEAX---NSLY 314
Query: 457 KGDNLSGHVGSPNPACEIKLV----DVPEMNYTSEDQPHPRGEICVRGP-IVFQGYYKNE 511
+G +P E+++V V E+ E+ GE+ V F GY
Sbjct: 315 XRQPKTGTEXAPGFFSEVRIVRIGGGVDEIVANGEE-----GELIVAASDSAFVGYLNQP 369
Query: 512 VQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFV 571
T E + DGW T D+ +W P G ++I+ R + ++ GE + P +IE V V
Sbjct: 370 QATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDXI-ISGGENIHPSEIERVLGTAPGV 427
Query: 572 LQCFI-------YGDSFNSCLV 586
+ + +G S +C+V
Sbjct: 428 TEVVVIGLADQRWGQSVTACVV 449
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 99/442 (22%), Positives = 174/442 (39%), Gaps = 92/442 (20%)
Query: 140 RIGLYLINRPEWLIVDHACSAYSYISVPLYDT-LGPDAVKYVVNHAEIEAIFC-IPQTLN 197
R+GLY+ N + +I+ HAC + I + + +T L P+ + + +++ IFC +P L
Sbjct: 50 RVGLYIDNSIQSIILIHAC-WLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELR 108
Query: 198 TLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKP-- 255
+I S+ I G L +T G+ Q +S + P +
Sbjct: 109 GF-----QIVSLDDIEFAGRDITTNGLLDNTMGI----------QYDTSNETVVPKESPS 153
Query: 256 ---------EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPL 306
+DIA+I +TSGTTG K T N ++ G + F ++S LP+
Sbjct: 154 NILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPI 213
Query: 307 AHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVK 366
HI + + +V G V D L ++K N I+ +
Sbjct: 214 YHISGLSVLLRAVIEGFTVRIV--DKFNAEQILTMIK-----------NERITHISLVPQ 260
Query: 367 ASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPD 426
L ++ YN +K + G + LS
Sbjct: 261 TLNWLMQQGLHEPYNLQKILL-------------------------------GGAKLSAT 289
Query: 427 VMDFLKVCFGCQVMEGYGMTET-SCIISAIDKGDNLS-GHVGSPNPACEIKLVDVPEMNY 484
+++ + + + +GMTET S ++A + + VG P+ ++K+
Sbjct: 290 MIE-TALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKI-------- 340
Query: 485 TSEDQPHPRGEICVRGPIVFQGY-YKNEVQ-TREVIDGDGWLHTGDIGLWLPGGRLKIID 542
GE+ ++G V GY Y ++ T E +G+ +TGDI G + I D
Sbjct: 341 -KNPNKEGHGELMIKGANVMNGYLYPTDLTGTFE----NGYFNTGDIAEIDHEGYVMIYD 395
Query: 543 RKKNIFKLAQGEYVAPEKIENV 564
R+K++ ++ GE + P +IE V
Sbjct: 396 RRKDLI-ISGGENIYPYQIETV 416
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 96/455 (21%), Positives = 171/455 (37%), Gaps = 75/455 (16%)
Query: 134 GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIP 193
GLQ+G R+ + L PEW +V C I +P + + Y + ++ +AI
Sbjct: 95 GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD 154
Query: 194 QTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPP 253
+ + + + SE PS+ + ++V K S G +++ +L ++ S+
Sbjct: 155 EVIQEVDTVASECPSLRIKLLVSEK--------SCDG--WLNFKKLLNE-ASTTHHCVET 203
Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA 313
++ + I +TSGT+G PK A ++ +L + SDI + I
Sbjct: 204 GSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNIL 263
Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
++ + A F L D L +LK S P I + + + L++
Sbjct: 264 CSLMEPWALGACTFVH--LLPKFDPLVILK--TLSSYP-----IKSMMGAPIVYRMLLQQ 314
Query: 374 KLFTAAYNSKKQAIVSGQT--PSKM--WDRLVFNKIRERLGGR---VRFMGSGASPLSPD 426
L + + + + G++ P + W IRE G + M S + P
Sbjct: 315 DLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPG 374
Query: 427 VMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTS 486
M C+ Q+++ DKG+ L
Sbjct: 375 YMGTAASCYDVQIID--------------DKGNVLP------------------------ 396
Query: 487 EDQPHPRGEICVR-GPI----VFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKII 541
P G+I +R PI +F GY N +T I GD WL GD G+ G + +
Sbjct: 397 ---PGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFM 452
Query: 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI 576
R +I + G + P ++EN + V++ +
Sbjct: 453 GRADDIIN-SSGYRIGPSEVENALMEHPAVVETAV 486
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 96/455 (21%), Positives = 171/455 (37%), Gaps = 75/455 (16%)
Query: 134 GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIP 193
GLQ+G R+ + L PEW +V C I +P + + Y + ++ +AI
Sbjct: 95 GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD 154
Query: 194 QTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPP 253
+ + + + SE PS+ + ++V K S G +++ +L ++ S+
Sbjct: 155 EVIQEVDTVASECPSLRIKLLVSEK--------SCDG--WLNFKKLLNE-ASTTHHCVET 203
Query: 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA 313
++ + I +TSGT+G PK A ++ +L + SDI + I
Sbjct: 204 GSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNIL 263
Query: 314 NQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLRE 373
++ + A F L D L +LK S P I + + + L++
Sbjct: 264 CSLMEPWALGACTFVH--LLPKFDPLVILK--TLSSYP-----IKSMMGAPIVYRMLLQQ 314
Query: 374 KLFTAAYNSKKQAIVSGQT--PSKM--WDRLVFNKIRERLGGR---VRFMGSGASPLSPD 426
L + + + + G++ P + W IRE G + M S + P
Sbjct: 315 DLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPG 374
Query: 427 VMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTS 486
M C+ Q+++ DKG+ L
Sbjct: 375 YMGTAASCYDVQIID--------------DKGNVLP------------------------ 396
Query: 487 EDQPHPRGEICVR-GPI----VFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKII 541
P G+I +R PI +F GY N +T I GD WL GD G+ G + +
Sbjct: 397 ---PGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFM 452
Query: 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI 576
R +I + G + P ++EN + V++ +
Sbjct: 453 GRADDIIN-SSGYRIGPSEVENALMEHPAVVETAV 486
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 437 CQVMEGYGMTETSCIISAIDKGDNLSGH-----VGSPNPACEIKLVDVPEMNYTSEDQPH 491
+++ YG TE + +SAI+ + + +G P P ++D +S +Q
Sbjct: 291 AKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ-- 348
Query: 492 PRGEICVRGPIVFQGYYKNEVQTRE---VIDGDGWLHTGDIG------LWLPGGRL 538
GEI V GP V +GY N +T E G HTGDIG + L GGRL
Sbjct: 349 --GEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRL 402
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 203 ISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQGCSSPQPF---CPPKPEDIA 259
I EI LI+ + E P + G+ L+S +++S + P+ K +D
Sbjct: 96 IIEIAKPSLIIAI----EEFPL--TIEGISLVSLSEIESAKLAE-MPYERTHSVKGDDNY 148
Query: 260 TICYTSGTTGTPKGAVLTHGNLIS 283
I +TSGTTG PKG ++H NL+S
Sbjct: 149 YIIFTSGTTGQPKGVQISHDNLLS 172
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 504 FQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
F GY T E + DGW T D+ +W P G ++I+ R ++ ++ GE + P +IE
Sbjct: 362 FVGYLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIER 419
Query: 564 VYAKCKFVLQCFI-------YGDSFNSCLV 586
V V + + +G S +C+V
Sbjct: 420 VLGTAPGVTEVVVIGLADQRWGQSVTACVV 449
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 227 STSGVKLISYLQLQSQGCSSPQPFCPP------KPEDIATICYTSGTTGTPKGAVLTHGN 280
S SG ++I L G P + PP +P A I YTSGTTG PK A++
Sbjct: 120 SGSGARIIFLGDLVRDG--EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177
Query: 281 LISNVAGFSLMVQFYPS--DIYMSYLPLAHI 309
S V S V ++ + +PL H+
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 504 FQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
F GY T E + DGW T D+ +W P G ++I+ R ++ ++ GE + P +IE
Sbjct: 362 FVGYLNQPEATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIER 419
Query: 564 VYAKCKFVLQCFI-------YGDSFNSCLV 586
V V + + +G S +C+V
Sbjct: 420 VLGTAPGVTEVVVIGLADQRWGQSVTACVV 449
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 227 STSGVKLISYLQLQSQGCSSPQPFCPP------KPEDIATICYTSGTTGTPKGAVLTHGN 280
S SG ++I L G P + PP +P A I YTSGTTG PK A++
Sbjct: 120 SGSGARIIFLGDLVRDG--EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177
Query: 281 LISNVAGFSLMVQFYPS--DIYMSYLPLAHI 309
S V S V ++ + +PL H+
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 504 FQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIEN 563
F GY T E + DGW T D+ +W P G ++I+ R ++ ++ GE + P +IE
Sbjct: 362 FVGYLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVPDMI-ISGGENIHPSEIER 419
Query: 564 VYAKCKFVLQCFI-------YGDSFNSCLV 586
V V + + +G S +C+V
Sbjct: 420 VLGTAPGVTEVVVIGLADQRWGQSVTACVV 449
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 227 STSGVKLISYLQLQSQGCSSPQPFCPP------KPEDIATICYTSGTTGTPKGAVLTHGN 280
S SG ++I L G P + PP +P A I YTSGTTG PK A++
Sbjct: 120 SGSGARIIFLGDLVRDG--EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177
Query: 281 LISNVAGFSLMVQFYPS--DIYMSYLPLAHI 309
S V S V ++ + +PL H+
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 253 PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLA 307
P ED+A + YTSGTTG PKG + H N+++ +AG + F D ++ + L+
Sbjct: 172 PGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLS 226
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
K ++Y E+ + LL G++KG + +Y+ PE + AC+ + ++
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
P+AV + V+ E + A IP N + + + SV ++V+ G
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
D + G L + L + QP ED I YTSG+TG PKG + T
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIY 300
G L+ F + ++P DIY
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 133/355 (37%), Gaps = 60/355 (16%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
K ++Y E+ + LL G++KG + +Y+ PE + AC+ + ++
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
P+AV + V+ E + A IP N + + + SV ++V+ G
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
D + G L + L + QP ED I YTSG+TG PKG + T
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMD 337
G L+ F + ++P DIY + VG+ G + L
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY-------------------WCTADVGWVTGHSYLLYG 319
Query: 338 DLAVLKPTI-FPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM 396
LA T+ F VP + + + + A + + + G
Sbjct: 320 PLACGATTLMFEGVPN-----WPTPARMCQVVDKHQVNILYTAPTAIRALMAEG------ 368
Query: 397 WDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTET 448
D+ + R L R +GS P++P+ ++ G C V++ + TET
Sbjct: 369 -DKAIEGTDRSSL----RILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET 418
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
K ++Y E+ + LL G++KG + +Y+ PE + AC+ + ++
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
P+AV + V+ E + A IP N + + + SV ++V+ G
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
D + G L + L + QP ED I YTSG+TG PKG + T
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIY 300
G L+ F + ++P DIY
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
K ++Y E+ + LL G++KG + +Y+ PE + AC+ + ++
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
P+AV + V+ E + A IP N + + + SV ++V+ G
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
D + G L + L + QP ED I YTSG+TG PKG + T
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIY 300
G L+ F + ++P DIY
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
K ++Y E+ + LL G++KG + +Y+ PE + AC+ + ++
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
P+AV + V+ E + A IP N + + + SV ++V+ G
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
D + G L + L + QP ED I YTSG+TG PKG + T
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIY 300
G L+ F + ++P DIY
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
K ++Y E+ + LL G++KG + +Y+ PE + AC+ + ++
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
P+AV + V+ E + A IP N + + + SV ++V+ G
Sbjct: 166 FSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
D + G L + L + QP ED I YTSG+TG PKG + T
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIY 300
G L+ F + ++P DIY
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY 301
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 112 KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDT 171
K ++Y E+ + LL G++KG + +Y+ PE + AC+ + ++
Sbjct: 106 KHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 172 LGPDAV---------KYVVNHAE-IEAIFCIPQTLNTLLSFIS-EIPSVHLIVVVG--GK 218
P+AV + V+ E + A IP N + + + SV ++V+ G
Sbjct: 166 FSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS 225
Query: 219 DEHLPSLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTH 278
D + G L + L + QP ED I YTSG+TG PKG + T
Sbjct: 226 D-----IDWQEGRDLW-WRDLIEKASPEHQPEAM-NAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 279 GN-LISNVAGFSLMVQFYPSDIY 300
G L+ F + ++P DIY
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIY 301
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 88/378 (23%), Positives = 148/378 (39%), Gaps = 63/378 (16%)
Query: 245 SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS----NVAGFSLMVQFYPSDIY 300
++P P K ++ I YTSG+TG PKG +T+ L+S V F+L ++
Sbjct: 133 NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQT----GQVF 188
Query: 301 MSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAG 360
++ P + +L +MD I+PS+ + G
Sbjct: 189 LNQAPFSF-----------------------DLSVMD--------IYPSL------VTGG 211
Query: 361 ITNAVKASGTLREK-LFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVR-FMGS 418
A+ R K LF + S Q S TPS L+ E + ++ F+
Sbjct: 212 TLWAIDKDMIARPKDLFASLEQSDIQVWTS--TPSFAEMCLMEASFSESMLPNMKTFLFC 269
Query: 419 GASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN-LSGHVGSPNPAC--EIK 475
G + ++ +M YG TE + ++ I + L + P C + +
Sbjct: 270 GEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCR 329
Query: 476 LVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTRE---VIDGDGWLHTGDIGLW 532
L+ + E + D +GEI + GP V GY + T + +IDG+ TGD G +
Sbjct: 330 LLIMKEDGTIAPD--GEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAG-Y 386
Query: 533 LPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY----GDSFNSCLVAI 588
+ G L R KL G + E+IE+ C +V I G+ ++ L +
Sbjct: 387 VENGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVV 445
Query: 589 VAVDPDVLKDWAASQGIK 606
V + K++ + IK
Sbjct: 446 VPGEHSFEKEFKLTSAIK 463
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 88/378 (23%), Positives = 148/378 (39%), Gaps = 63/378 (16%)
Query: 245 SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS----NVAGFSLMVQFYPSDIY 300
++P P K ++ I YTSG+TG PKG +T+ L+S V F+L ++
Sbjct: 133 NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQT----GQVF 188
Query: 301 MSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAG 360
++ P + +L +MD I+PS+ + G
Sbjct: 189 LNQAPFSF-----------------------DLSVMD--------IYPSL------VTGG 211
Query: 361 ITNAVKASGTLREK-LFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVR-FMGS 418
A+ R K LF + S Q S TPS L+ E + ++ F+
Sbjct: 212 TLWAIDKDMIARPKDLFASLEQSDIQVWTS--TPSFAEMCLMEASFSESMLPNMKTFLFC 269
Query: 419 GASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDN-LSGHVGSPNPAC--EIK 475
G + ++ +M YG TE + ++ I + L + P C + +
Sbjct: 270 GEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCR 329
Query: 476 LVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTRE---VIDGDGWLHTGDIGLW 532
L+ + E + D +GEI + GP V GY + T + +IDG+ TGD G +
Sbjct: 330 LLIMKEDGTIAPD--GEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAG-Y 386
Query: 533 LPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY----GDSFNSCLVAI 588
+ G L R KL G + E+IE+ C +V I G+ ++ L +
Sbjct: 387 VENGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVV 445
Query: 589 VAVDPDVLKDWAASQGIK 606
V + K++ + IK
Sbjct: 446 VPGEHSFEKEFKLTSAIK 463
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLA 307
PED+A + +TSG+TG PKG + H L G F P ++++ P++
Sbjct: 213 PEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQD-YAGFGPDEVFLQCSPVS 264
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLA 307
PED+A + +TSG+TG PKG + H L G F P ++++ P++
Sbjct: 213 PEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQD-YAGFGPDEVFLQCSPVS 264
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 123/332 (37%), Gaps = 57/332 (17%)
Query: 256 EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQ 315
+ IA I ++SGTTG PK TH + G S + F P ++ PL+ ++ A
Sbjct: 164 DQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLA-FAPQMRFLVNSPLS--FDAAT- 219
Query: 316 IVSVYYGVAVGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKL 375
+ ++ + G +++DL L P G LR+ +
Sbjct: 220 -LEIWGALLNG-----GCCVLNDLGPLDP------------------------GVLRQLI 249
Query: 376 FTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF 435
++ S + +++ LV + + LGG + + G P V L
Sbjct: 250 -------GERGADSAWLTASLFNTLV-DLDPDCLGGLRQLLTGGDILSVPHVRRALLRHP 301
Query: 436 GCQVMEGYGMTE----TSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPH 491
++ GYG TE T C + D + +G + L+D D+
Sbjct: 302 RLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRA- 360
Query: 492 PRGEICVRGPIVFQGYYKNEVQTREV---IDGDGWL----HTGDIGLWLPGGRLKIIDRK 544
GEI G + QGY + +TR + G L TGD + GRL+ I R
Sbjct: 361 --GEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRG 418
Query: 545 KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFI 576
KL G + +E + + +L C +
Sbjct: 419 DGQVKL-NGYRLDLPALEQRFRRQPGILDCAL 449
>pdb|2QN0|A Chain A, Structure Of Botulinum Neurotoxin Serotype C1 Light Chain
Protease
Length = 430
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 511 EVQTREVIDGDGWLHTGDIG--LWLPGGRLKIIDRKKNIFKLAQGEYVAPE 559
+V+TR+ G+ W+ TG I + + G R IID + + FKL + A E
Sbjct: 137 DVKTRQ---GNNWVKTGSINPSVIITGPRENIIDPETSTFKLTNNTFAAQE 184
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 24/185 (12%)
Query: 437 CQVMEGYGMTETSCIISAIDKGDNL-----SGHVGSPNPACEIKLVDVPEMNYTSEDQPH 491
++ YG TE + +++++ +++ S VG P I ++D E QP
Sbjct: 287 AKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-------EEGQPL 339
Query: 492 P---RGEICVRGPIVFQGYYKNEVQTREVI---DGDGWLHTGDIGLWLPGGRLKIIDRKK 545
P +GEI + GP V +GY T + +G TGD G ++ G++ R
Sbjct: 340 PEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAG-FIQDGQIFCQGRLD 398
Query: 546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY----GDSFNSCLVAIVAVDPDVLKDWAA 601
KL G + E+IE + ++V + + + AIV + + K++
Sbjct: 399 FQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQL 457
Query: 602 SQGIK 606
+ IK
Sbjct: 458 TSAIK 462
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 261 ICYTSGTTGTPKGAVLTHGNLIS 283
I YTSG+TG PKG ++ NL S
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQS 170
>pdb|3DEB|A Chain A, Crystal Structure Of Apo Form (Zinc Removed) Of The
Botulinum Neurotoxin Type C Light Chain
Length = 450
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 511 EVQTREVIDGDGWLHTGDIG--LWLPGGRLKIIDRKKNIFKLAQGEYVAPE 559
+V+TR+ G+ W+ TG I + + G R IID + + FKL + A E
Sbjct: 157 DVKTRQ---GNNWVKTGSINPSVIITGPRENIIDPETSTFKLTNNTFAAQE 204
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 51/263 (19%), Positives = 104/263 (39%), Gaps = 24/263 (9%)
Query: 114 MTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTL 172
+TY E+ ++ L + G++KG + +Y+ PE +I A S I ++
Sbjct: 114 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173
Query: 173 GPDAVKYVVNHAEIEAIFC---------IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLP 223
++++ +N + + + + +T + + E P V ++V + + P
Sbjct: 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVY--RKTNNP 231
Query: 224 SLPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAV-LTHGNLI 282
S+ + L + + + P P ED + YTSG+TG PKG T G L+
Sbjct: 232 SVAFHAPRDLD--WATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLL 289
Query: 283 SNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVS-VYYGVAVGFYQGDN--------L 333
+ + D++ + + I + + YG A ++G
Sbjct: 290 GALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYW 349
Query: 334 KLMDDLAVLKPTIFPSVPRLYNR 356
++D+ V + + P+ RL R
Sbjct: 350 DIIDEHKVTQFYVAPTALRLLKR 372
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 259 ATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFY--------PSDIYMSYLPLAH 308
A + YTSG+T TP G V++H N+ N LM ++ P+ +S+LP H
Sbjct: 186 AYLQYTSGSTRTPAGVVMSHQNVRVNFE--QLMSGYFADTDGIPPPNSALVSWLPFYH 241
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 11/47 (23%)
Query: 255 PEDI-ATICYTSGTTGTPKGAVLTH----------GNLISNVAGFSL 290
PE++ A + YTSG+TGTPKG ++ G LI NVA SL
Sbjct: 173 PENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSL 219
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 259 ATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFY---------PSDIYMSYLPLAH 308
A + YTSG+T TP G V +H N+ N F + Y P+ +S+LP H
Sbjct: 186 AYLQYTSGSTRTPAGVVXSHQNVRVN---FEQLXSGYFADTDGIPPPNSALVSWLPFYH 241
>pdb|2LXF|A Chain A, Solution Nmr Structure Of A Potential Acylphosphatase From
Giardia Lamblia, Seattle Structural Genomics Center For
Infectious Disease Target Gilaa.01396.A
Length = 121
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKG 273
L+ Q+QG S Q P ED+ T+CY TG +G
Sbjct: 12 LEAQTQGPGSMQGSMPSSSEDVTTLCYR--VTGKVQG 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,860,465
Number of Sequences: 62578
Number of extensions: 915219
Number of successful extensions: 1911
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1739
Number of HSP's gapped (non-prelim): 120
length of query: 666
length of database: 14,973,337
effective HSP length: 105
effective length of query: 561
effective length of database: 8,402,647
effective search space: 4713884967
effective search space used: 4713884967
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)