Query 005991
Match_columns 666
No_of_seqs 483 out of 3142
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 13:04:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 1.8E-80 6.1E-85 688.9 43.1 492 76-640 19-532 (536)
2 3g7s_A Long-chain-fatty-acid-- 100.0 4E-80 1.4E-84 688.1 43.9 496 77-641 17-540 (549)
3 1v25_A Long-chain-fatty-acid-C 100.0 1.6E-79 5.3E-84 681.8 48.1 492 78-640 17-533 (541)
4 3rix_A Luciferase, luciferin 4 100.0 4.4E-80 1.5E-84 687.9 41.1 500 77-641 18-539 (550)
5 3etc_A AMP-binding protein; ad 100.0 3.8E-79 1.3E-83 682.7 47.5 496 76-640 53-576 (580)
6 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.1E-79 3.9E-84 682.6 39.1 486 78-640 24-528 (539)
7 3o83_A Peptide arylation enzym 100.0 2E-79 6.7E-84 681.4 40.1 491 77-640 28-537 (544)
8 3r44_A Fatty acyl COA syntheta 100.0 2.8E-79 9.5E-84 675.9 40.6 487 75-640 12-510 (517)
9 4fuq_A Malonyl COA synthetase; 100.0 1.6E-79 5.5E-84 675.5 37.1 482 83-640 4-497 (503)
10 2d1s_A Luciferase, luciferin 4 100.0 8.2E-79 2.8E-83 676.7 40.0 494 77-640 23-540 (548)
11 3ivr_A Putative long-chain-fat 100.0 4.3E-78 1.5E-82 666.0 39.6 483 77-642 4-500 (509)
12 3c5e_A Acyl-coenzyme A synthet 100.0 1.8E-77 6E-82 668.3 44.9 492 77-640 36-559 (570)
13 1t5h_X 4-chlorobenzoyl COA lig 100.0 8E-78 2.7E-82 662.8 41.5 477 78-640 1-501 (504)
14 1pg4_A Acetyl-COA synthetase; 100.0 7.9E-78 2.7E-82 681.3 41.7 508 76-642 73-620 (652)
15 4gr5_A Non-ribosomal peptide s 100.0 3.3E-78 1.1E-82 675.4 36.6 470 76-640 72-568 (570)
16 1amu_A GRSA, gramicidin synthe 100.0 2.2E-77 7.4E-82 666.6 39.4 470 76-640 36-526 (563)
17 4dg8_A PA1221; ANL superfamily 100.0 1.2E-77 4.2E-82 674.2 36.2 468 76-640 24-510 (620)
18 2v7b_A Benzoate-coenzyme A lig 100.0 4.3E-77 1.5E-81 661.2 39.2 490 77-639 22-528 (529)
19 1ry2_A Acetyl-coenzyme A synth 100.0 5.9E-77 2E-81 674.3 40.6 510 75-641 78-635 (663)
20 3rg2_A Enterobactin synthase c 100.0 2.8E-76 9.7E-81 665.6 41.2 489 77-640 25-531 (617)
21 3e7w_A D-alanine--poly(phospho 100.0 2.8E-76 9.5E-81 651.6 40.1 472 79-640 1-500 (511)
22 3fce_A D-alanine--poly(phospho 100.0 8.5E-77 2.9E-81 656.2 34.2 470 79-640 1-501 (512)
23 3tsy_A Fusion protein 4-coumar 100.0 2.1E-76 7.3E-81 700.6 39.5 499 75-640 57-579 (979)
24 3nyq_A Malonyl-COA ligase; A/B 100.0 6.4E-77 2.2E-81 654.8 29.1 471 76-639 19-504 (505)
25 2vsq_A Surfactin synthetase su 100.0 1.1E-75 3.7E-80 711.6 42.3 521 4-641 415-958 (1304)
26 3l8c_A D-alanine--poly(phospho 100.0 3.2E-76 1.1E-80 653.2 33.2 473 78-641 3-510 (521)
27 3ipl_A 2-succinylbenzoate--COA 100.0 4.9E-76 1.7E-80 648.6 30.8 481 80-640 2-494 (501)
28 3ite_A SIDN siderophore synthe 100.0 1.1E-73 3.9E-78 638.5 32.4 485 76-640 17-540 (562)
29 3kxw_A Saframycin MX1 syntheta 100.0 2.6E-73 9E-78 640.0 31.1 488 77-640 9-564 (590)
30 3gqw_A Fatty acid AMP ligase; 100.0 6.1E-72 2.1E-76 627.4 36.9 486 75-640 17-560 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 2.1E-62 7.3E-67 537.3 30.9 400 77-543 22-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 2.8E-53 9.5E-58 444.7 15.4 303 255-640 36-351 (358)
33 2y4o_A Phenylacetate-coenzyme 100.0 2.6E-49 8.9E-54 428.4 19.4 339 234-640 73-441 (443)
34 3qov_A Phenylacetate-coenzyme 100.0 1.7E-48 5.7E-53 421.2 20.1 323 252-640 81-434 (436)
35 2y27_A Phenylacetate-coenzyme 100.0 4.4E-48 1.5E-52 418.0 18.8 337 234-639 71-435 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 1.1E-30 3.9E-35 275.2 16.8 238 253-555 88-369 (369)
37 3lax_A Phenylacetate-coenzyme 99.1 1.5E-11 5.1E-16 104.1 0.6 87 542-635 1-102 (109)
38 3gxs_A Phenylacetate-coenzyme 99.0 2.3E-11 7.9E-16 102.8 0.2 88 542-636 1-103 (109)
39 4eql_A 4-substituted benzoates 98.9 1.2E-08 4.3E-13 110.2 13.9 133 413-568 302-447 (581)
40 4b2g_A GH3-1 auxin conjugating 98.9 1.1E-07 3.7E-12 103.0 20.5 131 413-566 307-457 (609)
41 4epl_A Jasmonic acid-amido syn 98.7 3.4E-07 1.2E-11 98.8 18.4 147 411-580 302-474 (581)
42 2y27_A Phenylacetate-coenzyme 92.9 1.5 5E-05 46.0 14.9 123 92-217 88-220 (437)
43 2y4o_A Phenylacetate-coenzyme 92.8 1.6 5.5E-05 45.7 14.9 122 93-217 91-222 (443)
44 3qov_A Phenylacetate-coenzyme 91.7 1.5 5.1E-05 45.9 13.0 121 94-217 86-216 (436)
45 1mdb_A 2,3-dihydroxybenzoate-A 82.2 26 0.00088 37.5 15.9 120 92-217 180-308 (539)
46 3ipl_A 2-succinylbenzoate--COA 80.1 30 0.001 36.4 15.5 118 92-215 161-282 (501)
47 2d1s_A Luciferase, luciferin 4 78.4 14 0.00048 39.7 12.2 119 94-216 192-318 (548)
48 3o83_A Peptide arylation enzym 78.3 25 0.00084 37.6 14.2 120 92-217 189-317 (544)
49 3r44_A Fatty acyl COA syntheta 76.3 33 0.0011 36.3 14.3 118 93-217 169-294 (517)
50 3rg2_A Enterobactin synthase c 74.3 55 0.0019 35.5 15.8 119 93-217 183-312 (617)
51 3hgu_A EHPF; phenazine, antibi 74.3 14 0.00048 37.2 10.2 105 92-200 89-220 (369)
52 1t5h_X 4-chlorobenzoyl COA lig 72.7 23 0.00079 37.4 11.9 119 92-216 151-281 (504)
53 3rix_A Luciferase, luciferin 4 70.8 26 0.00088 37.5 11.9 121 94-217 190-317 (550)
54 4gs5_A Acyl-COA synthetase (AM 68.8 20 0.00068 36.0 9.8 124 85-216 28-157 (358)
55 3c5e_A Acyl-coenzyme A synthet 68.5 43 0.0015 36.0 13.1 121 92-217 204-332 (570)
56 3e7w_A D-alanine--poly(phospho 68.4 43 0.0015 35.3 12.9 120 92-216 141-269 (511)
57 3fce_A D-alanine--poly(phospho 67.1 24 0.00082 37.4 10.5 120 92-216 142-270 (512)
58 3ivr_A Putative long-chain-fat 66.5 79 0.0027 33.2 14.5 117 92-215 158-280 (509)
59 1v25_A Long-chain-fatty-acid-C 66.5 36 0.0012 36.2 11.9 122 92-216 174-302 (541)
60 3kxw_A Saframycin MX1 syntheta 65.5 39 0.0013 36.4 12.1 120 92-216 165-298 (590)
61 1pg4_A Acetyl-COA synthetase; 64.8 37 0.0013 37.3 11.8 121 93-217 255-388 (652)
62 2cvi_A 75AA long hypothetical 63.2 13 0.00044 28.2 5.4 45 558-603 15-59 (83)
63 3ni2_A 4-coumarate:COA ligase; 59.9 38 0.0013 36.1 10.5 98 254-359 35-137 (536)
64 4dg8_A PA1221; ANL superfamily 59.9 57 0.0019 35.5 12.0 120 92-217 162-286 (620)
65 3etc_A AMP-binding protein; ad 58.5 47 0.0016 35.8 11.0 121 92-217 223-351 (580)
66 1ry2_A Acetyl-coenzyme A synth 57.7 43 0.0015 36.8 10.7 121 93-217 261-394 (663)
67 3g7s_A Long-chain-fatty-acid-- 57.3 62 0.0021 34.5 11.7 103 254-359 32-140 (549)
68 2zbc_A 83AA long hypothetical 57.1 15 0.00051 27.6 4.9 44 559-603 16-59 (83)
69 3ite_A SIDN siderophore synthe 55.8 46 0.0016 35.6 10.4 122 94-217 175-304 (562)
70 4gr5_A Non-ribosomal peptide s 53.9 72 0.0025 34.1 11.5 120 92-217 212-336 (570)
71 2djw_A Probable transcriptiona 48.6 18 0.00062 28.0 4.1 45 558-603 15-59 (92)
72 3nyq_A Malonyl-COA ligase; A/B 48.5 1.4E+02 0.0049 31.1 12.7 103 92-201 153-259 (505)
73 3t5a_A Long-chain-fatty-acid-- 48.3 1.1E+02 0.0039 31.5 11.8 102 254-359 37-148 (480)
74 2v7b_A Benzoate-coenzyme A lig 48.3 67 0.0023 33.9 10.0 95 254-358 36-135 (529)
75 1amu_A GRSA, gramicidin synthe 45.8 1E+02 0.0035 32.9 11.1 92 254-355 52-148 (563)
76 4fuq_A Malonyl COA synthetase; 42.2 1.1E+02 0.0038 32.0 10.5 82 275-357 28-114 (503)
77 3l8c_A D-alanine--poly(phospho 42.1 1.8E+02 0.0063 30.3 12.3 120 93-215 144-272 (521)
78 2cg4_A Regulatory protein ASNC 36.2 76 0.0026 27.0 6.6 47 558-606 82-128 (152)
79 3tsy_A Fusion protein 4-coumar 35.6 80 0.0027 36.5 8.7 96 254-357 74-174 (979)
80 3tbh_A O-acetyl serine sulfhyd 35.2 1.4E+02 0.0048 29.4 9.3 66 129-194 61-127 (334)
81 3ezx_A MMCP 1, monomethylamine 33.5 1.3E+02 0.0046 27.4 8.1 43 307-349 104-149 (215)
82 3nra_A Aspartate aminotransfer 31.9 2E+02 0.0067 28.6 10.2 53 135-191 123-185 (407)
83 2vsq_A Surfactin synthetase su 31.7 1.2E+02 0.0042 36.3 9.6 120 92-217 605-730 (1304)
84 2p5v_A Transcriptional regulat 29.9 1E+02 0.0034 26.5 6.4 45 558-603 85-129 (162)
85 3ffh_A Histidinol-phosphate am 28.6 4.1E+02 0.014 25.7 13.6 78 135-217 105-194 (363)
86 3i4p_A Transcriptional regulat 26.9 88 0.003 27.0 5.5 45 558-603 79-123 (162)
87 3euc_A Histidinol-phosphate am 26.6 4.4E+02 0.015 25.4 13.5 55 135-192 106-164 (367)
88 2dbb_A Putative HTH-type trans 26.1 1.3E+02 0.0044 25.4 6.3 44 559-603 83-127 (151)
89 2jgn_A DBX, DDX3, ATP-dependen 25.1 3.4E+02 0.012 23.6 9.5 89 122-217 32-123 (185)
90 3gqw_A Fatty acid AMP ligase; 24.8 2.7E+02 0.0094 29.3 10.2 84 273-357 47-142 (576)
91 2cfx_A HTH-type transcriptiona 24.7 1.6E+02 0.0056 24.5 6.7 44 558-602 78-121 (144)
92 3na5_A Phosphoglucomutase; iso 24.5 2.7E+02 0.0093 29.7 9.8 103 77-185 39-155 (570)
93 3sr3_A Microcin immunity prote 24.4 2E+02 0.0068 28.4 8.1 16 134-149 9-24 (336)
94 3ju7_A Putative PLP-dependent 24.2 1.6E+02 0.0055 29.4 7.6 61 129-192 69-136 (377)
95 3vc3_A Beta-cyanoalnine syntha 22.9 2.4E+02 0.0083 27.7 8.5 69 126-194 74-142 (344)
96 4h1h_A LMO1638 protein; MCCF-l 22.8 1.8E+02 0.0062 28.5 7.4 15 134-148 8-22 (327)
97 3tla_A MCCF; serine protease, 22.4 2.1E+02 0.0072 28.6 7.8 16 134-149 39-54 (371)
98 2rb4_A ATP-dependent RNA helic 22.0 3.7E+02 0.013 22.9 9.6 88 122-217 21-111 (175)
99 4e5s_A MCCFLIKE protein (BA_56 21.0 2.2E+02 0.0075 28.0 7.6 16 134-149 8-23 (331)
100 1t5i_A C_terminal domain of A 20.4 3.4E+02 0.012 23.2 8.2 87 122-216 18-107 (172)
101 2hjv_A ATP-dependent RNA helic 20.2 3.9E+02 0.013 22.5 8.5 87 123-217 23-112 (163)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.8e-80 Score=688.85 Aligned_cols=492 Identities=26% Similarity=0.376 Sum_probs=419.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991 76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD 155 (666)
Q Consensus 76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (666)
|...|+.++|.++++++||++|+++. ++ .+++||+||+++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus 19 p~~~~l~~~l~~~a~~~p~~~a~~~~---~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 91 (536)
T 3ni2_A 19 PKNLPLHSYVLENLSNHSSKPCLING---AN----GDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAF 91 (536)
T ss_dssp CSSCCHHHHHTTTGGGSTTSEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHhhcCCCceEEEEC---CC----CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 44589999999999999999999753 21 256999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991 156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235 (666)
Q Consensus 156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (666)
|||+++|++++|+++.++.+++.+++++++++++|++....+.+.+..... .++ ++.++.... ....
T Consensus 92 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~-----------~~~~ 158 (536)
T 3ni2_A 92 LGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DVK-VMCVDSAPD-----------GCLH 158 (536)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TCE-EEESSCCCT-----------TCEE
T ss_pred HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cce-EEEecCCCC-----------CccC
Confidence 999999999999999999999999999999999999988777766554332 233 444443211 1245
Q ss_pred hHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccc----ccccCCCcEEEEcCChHHHHH
Q 005991 236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL----MVQFYPSDIYMSYLPLAHIYE 311 (666)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~~ 311 (666)
++++...... ..+....+++|+++|+|||||||.||||++||+++++.+..... .+++.++|++++.+|++|.++
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 237 (536)
T 3ni2_A 159 FSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYA 237 (536)
T ss_dssp THHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHH
T ss_pred HHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHH
Confidence 6666544322 22334567899999999999999999999999999887765433 356789999999999999999
Q ss_pred HHH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005991 312 RAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS 389 (666)
Q Consensus 312 ~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~ 389 (666)
+.. ++.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+...
T Consensus 238 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------- 290 (536)
T 3ni2_A 238 LNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--------------------------- 290 (536)
T ss_dssp HHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC---------------------------
T ss_pred HHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc---------------------------
Confidence 966 678899999999987 799999999999999999999999988765210
Q ss_pred CCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhcc-----CCCCCCCC
Q 005991 390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAI-----DKGDNLSG 463 (666)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~-----~~~~~~~~ 463 (666)
.+. ...+++|.+++||+++++++.+++++.+ ++++++.||+||++.+++.. .......+
T Consensus 291 -------~~~--------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 355 (536)
T 3ni2_A 291 -------LDK--------HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPG 355 (536)
T ss_dssp -------GGG--------SCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTT
T ss_pred -------ccc--------CCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCC
Confidence 000 0114899999999999999999999988 89999999999998765433 22235678
Q ss_pred CccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEcc
Q 005991 464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR 543 (666)
Q Consensus 464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (666)
++|+|+++++++|+|++++..++.++ .|||||+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 356 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR 432 (536)
T 3ni2_A 356 ACGTVVRNAEMKIVDPETGASLPRNQ---PGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDR 432 (536)
T ss_dssp CCCEECSSCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CeeEeCCCcEEEEEeCCCCcCCCCCC---ccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEec
Confidence 99999999999999977777777665 899999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccc
Q 005991 544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFR 614 (666)
Q Consensus 544 ~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~ 614 (666)
+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++. .++++++++++ ++ .|+
T Consensus 433 ~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~-l~-----~~~ 505 (536)
T 3ni2_A 433 LKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQ-VI-----FYK 505 (536)
T ss_dssp CSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTT-SC-----GGG
T ss_pred ccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHHHHHHHh-cc-----CCc
Confidence 9999998 8999999999999999999999999986543 5789999863 47899999998 98 999
Q ss_pred cCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991 615 ANSHVIFIA-LIHNLCQLYSSKELFRS 640 (666)
Q Consensus 615 ~p~~i~~v~-~~~~~~gK~~r~~l~~~ 640 (666)
+|+.+.+++ +|++.+||++|++|++.
T Consensus 506 ~p~~i~~v~~lP~t~~GKi~R~~L~~~ 532 (536)
T 3ni2_A 506 RIKRVFFIEAIPKAPSGKILRKNLKEK 532 (536)
T ss_dssp CCSEEEECSCCCBCTTSCBCHHHHHTC
T ss_pred cccEEEEEecCCCCCCCCeeHHHHHHH
Confidence 999999995 88888899999999875
No 2
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=4e-80 Score=688.06 Aligned_cols=496 Identities=22% Similarity=0.318 Sum_probs=395.3
Q ss_pred CCCCHHHHHHHHHHhCCCCceEEEEEeccCc--cCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005991 77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGT--VGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV 154 (666)
Q Consensus 77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~--~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~ 154 (666)
+..|+.++|.++++++||++|+++. ++. .+..+++||+||+++++++|++|.+.|+++||+|+|+++|+++|+++
T Consensus 17 ~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 93 (549)
T 3g7s_A 17 PKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMT 93 (549)
T ss_dssp CCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence 4578999999999999999999886 421 22346799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEE
Q 005991 155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234 (666)
Q Consensus 155 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (666)
+|||+++|+++|||++.++.+++.+++++++++++|++....+.+.......+ ++.++..+.. ..
T Consensus 94 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------~~ 158 (549)
T 3g7s_A 94 IYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE--------------VN 158 (549)
T ss_dssp HHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS--------------SS
T ss_pred HHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC--------------Cc
Confidence 99999999999999999999999999999999999999988887777665554 5556655431 13
Q ss_pred ehHHHHhcCCCCCCCCCCCCC-CCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHH
Q 005991 235 SYLQLQSQGCSSPQPFCPPKP-EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA 313 (666)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~ 313 (666)
++.++...+.... +.....+ +|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++.
T Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~ 237 (549)
T 3g7s_A 159 SLSEVMDSGSEDF-ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFG 237 (549)
T ss_dssp CHHHHHHHSCSCC-CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHH
T ss_pred CHHHHHhcCcccc-ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHH
Confidence 5666665543322 2223334 8999999999999999999999999999998888888999999999999999999998
Q ss_pred HHHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005991 314 NQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT 392 (666)
Q Consensus 314 ~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~ 392 (666)
..+.++..|+++++.+ +++..+++.|+++++|+++++|+++..|.+.......
T Consensus 238 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------------- 291 (549)
T 3g7s_A 238 LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK-------------------------- 291 (549)
T ss_dssp HHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC--------------------------
T ss_pred HHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc--------------------------
Confidence 8778999999999987 7999999999999999999999999998774321100
Q ss_pred CChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHH----hC---CccccCcccchhhhhhhccCCCC-CCCCC
Q 005991 393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVC----FG---CQVMEGYGMTETSCIISAIDKGD-NLSGH 464 (666)
Q Consensus 393 ~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~----~~---~~v~~~YG~TE~~~~~~~~~~~~-~~~~~ 464 (666)
. ...+++|.+++||+++++++.+.+.+. ++ +++++.||+||++.+++...... ...++
T Consensus 292 ~--------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 357 (549)
T 3g7s_A 292 T--------------YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTT 357 (549)
T ss_dssp C--------------CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTS
T ss_pred c--------------CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCC
Confidence 0 001489999999999999999999887 56 88999999999998776655433 56788
Q ss_pred ccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccC--CCC--eeecccEEEEecCCcEEE
Q 005991 465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID--GDG--WLHTGDIGLWLPGGRLKI 540 (666)
Q Consensus 465 vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~--~~g--w~~TGDlg~~~~dG~l~i 540 (666)
+|+|+++++++|+|+++++.++.|+ .|||||+|++++.|||++|+.|+++|. .+| ||+|||+|++|+||+|+|
T Consensus 358 ~G~p~~~~~~~i~d~~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~ 434 (549)
T 3g7s_A 358 QGVPMSDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHF 434 (549)
T ss_dssp CCEECTTCEEEEECSSSCCEECTTC---CEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEE
T ss_pred ccccCCCCEEEEEeCCCCcCCCCCC---ceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEE
Confidence 9999999999999977778777765 899999999999999999999999983 567 999999999999999999
Q ss_pred EccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC--------hhHHHHHHHHcCCCccc
Q 005991 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD--------PDVLKDWAASQGIKVIY 609 (666)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~--------~~~l~~~~~~~~l~~~~ 609 (666)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++ .++++++++++ |+
T Consensus 435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~-L~--- 509 (549)
T 3g7s_A 435 QDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRER-IS--- 509 (549)
T ss_dssp EEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTT-CC---
T ss_pred eccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHh-cc---
Confidence 9999999997 8999999999999999999999999997654 5788999863 46899999998 98
Q ss_pred ccccccCcchhHHH-HHHHHhhhhhhhhhccch
Q 005991 610 CFSFRANSHVIFIA-LIHNLCQLYSSKELFRSR 641 (666)
Q Consensus 610 ~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~ 641 (666)
.|++|+.|.+++ +|++.+||++|++|++..
T Consensus 510 --~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~ 540 (549)
T 3g7s_A 510 --GYKRVREVEFVEELPRTASGKLLRRLLREKE 540 (549)
T ss_dssp -------CCCCEEEECC----------------
T ss_pred --CcccceEEEEeccCCCCCCcCEeHHHHHHHh
Confidence 999999999995 899999999999998874
No 3
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.6e-79 Score=681.75 Aligned_cols=492 Identities=22% Similarity=0.305 Sum_probs=388.7
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991 78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA 157 (666)
Q Consensus 78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (666)
..|+.++|.++++++||++|+.+. +. ++.+++||+||+++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999764 21 2356799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehH
Q 005991 158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL 237 (666)
Q Consensus 158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (666)
|+++|+++||+++.++.+++.+++++++++++|++....+.+......++.++.++.++..... ...+++
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 161 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE----------GYLAYE 161 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT----------TCEEHH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCc----------ccccHH
Confidence 9999999999999999999999999999999999998887777777777777777776543210 124566
Q ss_pred HHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhh--cccccccCCCcEEEEcCChHHHHHHHHH
Q 005991 238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAG--FSLMVQFYPSDIYMSYLPLAHIYERANQ 315 (666)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~--~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (666)
++...... .....++++++|+|||||||.||||++||+++++.... ....++++++|++++++|++|.+++...
T Consensus 162 ~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~ 237 (541)
T 1v25_A 162 EALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLP 237 (541)
T ss_dssp HHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHH
T ss_pred HHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHH
Confidence 66543322 13456789999999999999999999999999877655 2345678899999999999999999777
Q ss_pred HHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005991 316 IVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP 393 (666)
Q Consensus 316 ~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~ 393 (666)
+.+++.|+++++.+ .++..+++.++++++|+++++|+++..|.+......
T Consensus 238 ~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------- 289 (541)
T 1v25_A 238 YAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG---------------------------- 289 (541)
T ss_dssp HHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT----------------------------
T ss_pred HHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC----------------------------
Confidence 88999999999986 599999999999999999999999999876432110
Q ss_pred ChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCC-----------CCC
Q 005991 394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-----------NLS 462 (666)
Q Consensus 394 ~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-----------~~~ 462 (666)
...+++|.+++||+++++++.+++ +.+|+++++.||+||++.+++...... ...
T Consensus 290 --------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (541)
T 1v25_A 290 --------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLK 354 (541)
T ss_dssp --------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHH
T ss_pred --------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCcccccccc
Confidence 001489999999999999999999 568999999999999987666543321 134
Q ss_pred CCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEc
Q 005991 463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID 542 (666)
Q Consensus 463 ~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G 542 (666)
+++|+|+|+++++|+| ++++.++.+. ++.|||+|+||+++.|||++|+.|+++|..+|||+|||+|++|+||+|+|+|
T Consensus 355 ~~~G~p~~~~~~~i~d-~~g~~~~~~~-~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~G 432 (541)
T 1v25_A 355 AKTGLPIPLVRLRVAD-EEGRPVPKDG-KALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKD 432 (541)
T ss_dssp TSCBEECTTCEEEEEC-TTSCBCCSSS-CCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEE
T ss_pred CCCCCcCCCcEEEEEC-CCCCCCCCCC-CcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEee
Confidence 7899999999999999 5556555321 1379999999999999999999999999879999999999999999999999
Q ss_pred cCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC-----hhHHHHHHHH-cCCCccccccc
Q 005991 543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD-----PDVLKDWAAS-QGIKVIYCFSF 613 (666)
Q Consensus 543 R~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~l~~~~~~-~~l~~~~~~~~ 613 (666)
|+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++ .+++++++++ + |+ .|
T Consensus 433 R~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~~~~~~-L~-----~~ 505 (541)
T 1v25_A 433 RLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAG-FA-----KW 505 (541)
T ss_dssp ESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------C-CC-----TT
T ss_pred cccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCCCHHHHHHHHHhcc-Cc-----cc
Confidence 99999997 8999999999999999999999999997654 5789999863 3578888888 5 88 99
Q ss_pred ccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991 614 RANSHVIFIA-LIHNLCQLYSSKELFRS 640 (666)
Q Consensus 614 ~~p~~i~~v~-~~~~~~gK~~r~~l~~~ 640 (666)
++|+.+++++ +|++.+||++|++|++.
T Consensus 506 ~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 533 (541)
T 1v25_A 506 QLPDAYVFAEEIPRTSAGKFLKRALREQ 533 (541)
T ss_dssp TSCSBC--------------CCTTHHHH
T ss_pred cCCcEEEEeCCCCCCCccCeeHHHHHHH
Confidence 9999999995 88888899999999875
No 4
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=4.4e-80 Score=687.94 Aligned_cols=500 Identities=24% Similarity=0.331 Sum_probs=342.7
Q ss_pred CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991 77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH 156 (666)
Q Consensus 77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (666)
+..|+.++|.++++++||++|++... ++ ...+++||+||+++++++|++|+++|+++||+|+|+++|+++|++++|
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~a~~a~~--~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 93 (550)
T 3rix_A 18 EDGTAGEQLHKAMKRYALVPGTIAFT--DA--HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL 93 (550)
T ss_dssp CCSCHHHHHHHHHHHHHTSTTCEEEE--ET--TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCCceEEEee--ec--CCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHH
Confidence 45799999999999999999976321 21 112579999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991 157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY 236 (666)
Q Consensus 157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (666)
||+++|++++|+++.++.+++.+++++++++++|++......+......++.++.++.++..... ....++
T Consensus 94 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 164 (550)
T 3rix_A 94 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY---------QGFQSM 164 (550)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB---------TTBCBH
T ss_pred HHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccc---------cCcccH
Confidence 99999999999999999999999999999999999999888888888888888888887653211 012355
Q ss_pred HHHHhcCCCC------CCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc---cccCCCcEEEEcCChH
Q 005991 237 LQLQSQGCSS------PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLA 307 (666)
Q Consensus 237 ~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~ 307 (666)
.++....... ..+.....++++++|+|||||||.||||++||+++.+.+...... .++.++|++++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 244 (550)
T 3rix_A 165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFH 244 (550)
T ss_dssp HHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred HHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHH
Confidence 5554432211 111122346889999999999999999999999998887766554 5678999999999999
Q ss_pred HHHHHHHHHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 005991 308 HIYERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQA 386 (666)
Q Consensus 308 h~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~ 386 (666)
|.+++...+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..|.+....
T Consensus 245 ~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------- 301 (550)
T 3rix_A 245 HGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI----------------------- 301 (550)
T ss_dssp SHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGG-----------------------
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccc-----------------------
Confidence 9999988888999999999987 7999999999999999999999999988652100
Q ss_pred HHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCc-cccCcccchhhhhhhccCCCCCCCCCc
Q 005991 387 IVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGHV 465 (666)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~-v~~~YG~TE~~~~~~~~~~~~~~~~~v 465 (666)
+. ...+++|.+++||+++++++.+++.+.++.. +++.||+||+++.++.........+++
T Consensus 302 -----------~~--------~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~v 362 (550)
T 3rix_A 302 -----------DK--------YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAV 362 (550)
T ss_dssp -----------GG--------SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEE
T ss_pred -----------cc--------cCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCc
Confidence 00 0014899999999999999999999988875 899999999998877776666778999
Q ss_pred cCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCC
Q 005991 466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK 545 (666)
Q Consensus 466 G~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~ 545 (666)
|+|+|+++++|+|++++..++.++ .|||||+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+|
T Consensus 363 G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~d 439 (550)
T 3rix_A 363 GKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLK 439 (550)
T ss_dssp EEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----
T ss_pred ccccCCcEEEEEeCCCCcCCCCCC---CeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecch
Confidence 999999999999977777777665 89999999999999999999999999999999999999999999999999999
Q ss_pred CeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccc-c
Q 005991 546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFR-A 615 (666)
Q Consensus 546 d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~-~ 615 (666)
|+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++. +++++++++++ ++ .++ +
T Consensus 440 d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~-l~-----~~~~~ 512 (550)
T 3rix_A 440 SLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQ-VT-----TAKKL 512 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred heeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHh-cc-----ccccc
Confidence 99997 8999999999999999999999999987654 5788888864 35788888888 76 664 5
Q ss_pred CcchhHHH-HHHHHhhhhhhhhhccch
Q 005991 616 NSHVIFIA-LIHNLCQLYSSKELFRSR 641 (666)
Q Consensus 616 p~~i~~v~-~~~~~~gK~~r~~l~~~~ 641 (666)
|..|++++ +|++.+||++|++|++.-
T Consensus 513 ~~~i~~v~~lP~t~~GKi~r~~L~~~~ 539 (550)
T 3rix_A 513 RGGVVFVDEVPKGLTGKLDARKIREIL 539 (550)
T ss_dssp ---------------------------
T ss_pred CCceEEEeecCCCCCcceeHHHHHHHH
Confidence 55688885 888888999999998873
No 5
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=3.8e-79 Score=682.66 Aligned_cols=496 Identities=20% Similarity=0.250 Sum_probs=407.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991 76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD 155 (666)
Q Consensus 76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (666)
...+..+++|+++|+++||++|+++. +. .++.+++||+||.++++++|++|+++|+++||+|+|+++|+++|++++
T Consensus 53 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~ 128 (580)
T 3etc_A 53 ENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM 128 (580)
T ss_dssp SSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred ccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 34566679999999999999999876 32 244678999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH--HHHHHhhhcCCCc-eEEEEeCCCCCCCCCCCCCCCcE
Q 005991 156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL--NTLLSFISEIPSV-HLIVVVGGKDEHLPSLPSTSGVK 232 (666)
Q Consensus 156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~ 232 (666)
|||+++|+++||+++.++.+++.+++++++++++|++.+.. ..+.+....++.+ ..++.++.... ..
T Consensus 129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 198 (580)
T 3etc_A 129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVL----------EG 198 (580)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCC----------TT
T ss_pred HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccc----------cc
Confidence 99999999999999999999999999999999999987654 5565555555555 45555543211 11
Q ss_pred EEehHHHHhcCCCCCCCC---CCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHH
Q 005991 233 LISYLQLQSQGCSSPQPF---CPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHI 309 (666)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 309 (666)
..++.+............ ....++|+++|+|||||||.||||+++|.+++..+.......++.+++++++.+|++|.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (580)
T 3etc_A 199 WIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWG 278 (580)
T ss_dssp CEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTST
T ss_pred cccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHH
Confidence 356666665443322111 24678999999999999999999999999998887766666788999999999999999
Q ss_pred HHHHH-HHHHHHhCcEEEEec---CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 005991 310 YERAN-QIVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQ 385 (666)
Q Consensus 310 ~~~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~ 385 (666)
.+.+. ++.++..|+++++.+ +++..+++.|+++++|+++++|+++..|.+...
T Consensus 279 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~----------------------- 335 (580)
T 3etc_A 279 KCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL----------------------- 335 (580)
T ss_dssp HHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC-----------------------
T ss_pred HHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc-----------------------
Confidence 88876 677899999998873 799999999999999999999999988765200
Q ss_pred HHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCc
Q 005991 386 AIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV 465 (666)
Q Consensus 386 ~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~v 465 (666)
.....+++|.+++||+++++++.++|.+.+|++++++||+||++..++..+......+++
T Consensus 336 --------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~ 395 (580)
T 3etc_A 336 --------------------SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSI 395 (580)
T ss_dssp -----------------------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCC
T ss_pred --------------------ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCcc
Confidence 000114899999999999999999999989999999999999987766665556778999
Q ss_pred cCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeC-----CCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEE
Q 005991 466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG-----PIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540 (666)
Q Consensus 466 G~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g-----~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i 540 (666)
|+|+|+++++|+| ++++.++.|+ .|||+|+| ++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|
T Consensus 396 G~p~~~~~v~ivd-~~g~~~~~g~---~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~ 470 (580)
T 3etc_A 396 GKPTPGYKIELMD-RDGRLCEVGE---EGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWF 470 (580)
T ss_dssp BEECTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEE
T ss_pred ccCCCCCEEEEEC-CCCCCCCCCC---ceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEE
Confidence 9999999999999 5677776665 89999997 789999999999999999 699999999999999999999
Q ss_pred EccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh---------hHHHHHHHHcCCCcc
Q 005991 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP---------DVLKDWAASQGIKVI 608 (666)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~~~~~~l~~~ 608 (666)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.+ ++++++++++ ++
T Consensus 471 ~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~-l~-- 546 (580)
T 3etc_A 471 VGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNV-TA-- 546 (580)
T ss_dssp EEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHH-SC--
T ss_pred EecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhh-CC--
Confidence 9999999998 7999999999999999999999999997654 57889998643 4788999998 88
Q ss_pred cccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991 609 YCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS 640 (666)
Q Consensus 609 ~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~ 640 (666)
.|++|+.|.+++ +|++.+||++|++|++.
T Consensus 547 ---~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~ 576 (580)
T 3etc_A 547 ---PYKYPRIIEFVPELPKTISGKIRRVEIRDK 576 (580)
T ss_dssp ---GGGCCSEEEEECC-----------------
T ss_pred ---CccCCeEEEEeCCCCCCCCcCCcHHHHHhH
Confidence 999999999985 89999999999999875
No 6
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.1e-79 Score=682.56 Aligned_cols=486 Identities=21% Similarity=0.266 Sum_probs=411.9
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991 78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA 157 (666)
Q Consensus 78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (666)
..|+.++|.++++++||++|+.+. + +++||+||+++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999753 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH-----HHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcE
Q 005991 158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK 232 (666)
Q Consensus 158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (666)
|+++|+++||+++.++.+++.+++++++++++|++.... ..+......++.++.++..++..
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 999999999999999999999999999999999987532 23333444556666666554321
Q ss_pred EEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHH
Q 005991 233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER 312 (666)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 312 (666)
.+.++...... +.+.....++|+++|+|||||||.||||++||+++.+.+......++++++|++++++|++|.+++
T Consensus 162 --~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (539)
T 1mdb_A 162 --EFLPLEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL 238 (539)
T ss_dssp --TSEEGGGCCCC-CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred --chhhhhhcccc-ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchh
Confidence 11122221111 112234578999999999999999999999999999998887777889999999999999999998
Q ss_pred HH--HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005991 313 AN--QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS 389 (666)
Q Consensus 313 ~~--~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~ 389 (666)
.. ++.+++.|+++++.+ +++..+++.|+++++|++.++|+++..+.+......
T Consensus 239 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------ 294 (539)
T 1mdb_A 239 SSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR------------------------ 294 (539)
T ss_dssp HSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC------------------------
T ss_pred hHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC------------------------
Confidence 74 778999999999987 799999999999999999999999998876421100
Q ss_pred CCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC-CCCCCCccCC
Q 005991 390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSP 468 (666)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p 468 (666)
...+++|.+++||+++++++.+++++.+|+++++.||+||++..++..... ....+++|+|
T Consensus 295 ------------------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p 356 (539)
T 1mdb_A 295 ------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKP 356 (539)
T ss_dssp ------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEE
T ss_pred ------------------CCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcc
Confidence 001489999999999999999999998999999999999965433221111 1234689999
Q ss_pred ccC-cEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCe
Q 005991 469 NPA-CEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNI 547 (666)
Q Consensus 469 ~~~-~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ 547 (666)
+++ .+++|+| ++++.++.|+ .|||+|+|+++++|||++|+.|+++|..+|||+|||+|++|+||+|+|+||+||+
T Consensus 357 ~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ 432 (539)
T 1mdb_A 357 MSPYDESRVWD-DHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQ 432 (539)
T ss_dssp SSTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGC
T ss_pred cCCCceEEEEC-CCCCCCcCCC---cceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccce
Confidence 976 5899999 5667676665 8999999999999999999999999988999999999999999999999999999
Q ss_pred EEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC-----hhHHHHHHHHcCCCcccccccccCcch
Q 005991 548 FKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD-----PDVLKDWAASQGIKVIYCFSFRANSHV 619 (666)
Q Consensus 548 ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~l~~~~~~~~l~~~~~~~~~~p~~i 619 (666)
||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++ .+++++++++++|+ .|++|+.|
T Consensus 433 ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~l~~~~L~-----~~~~P~~i 506 (539)
T 1mdb_A 433 INR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLA-----AYKIPDRV 506 (539)
T ss_dssp EEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHTTCC-----GGGSCSEE
T ss_pred EEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCCCCHHHHHHHHHhCCCC-----cccCCCEE
Confidence 996 8999999999999999999999999997654 5789999864 47899999987688 99999999
Q ss_pred hHHH-HHHHHhhhhhhhhhccc
Q 005991 620 IFIA-LIHNLCQLYSSKELFRS 640 (666)
Q Consensus 620 ~~v~-~~~~~~gK~~r~~l~~~ 640 (666)
.+++ +|++.+||++|++|++.
T Consensus 507 ~~v~~lP~t~~GKi~r~~L~~~ 528 (539)
T 1mdb_A 507 EFVESFPQTGVGKVSKKALREA 528 (539)
T ss_dssp EECSSCCBCTTSCBCHHHHHHH
T ss_pred EEeccCCCCCCcCEeHHHHHHH
Confidence 9995 88888899999999876
No 7
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2e-79 Score=681.41 Aligned_cols=491 Identities=18% Similarity=0.220 Sum_probs=339.3
Q ss_pred CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991 77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH 156 (666)
Q Consensus 77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (666)
...|+.++|.++++++||++|+.+. .+.+||+||+++++++|++|+++|+++||+|+|+++|+++|++++|
T Consensus 28 ~~~tl~~~l~~~a~~~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 98 (544)
T 3o83_A 28 IDQPLTRILTVGVQSHPHSLAIICG---------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF 98 (544)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcC---------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
Confidence 3478999999999999999999753 2569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH-----HHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCc
Q 005991 157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGV 231 (666)
Q Consensus 157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (666)
||+++|++++|+++.++.+++.+++++++++++|++.... ..+.......+....++.++....
T Consensus 99 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 167 (544)
T 3o83_A 99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT----------- 167 (544)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT-----------
T ss_pred HHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc-----------
Confidence 9999999999999999999999999999999999987653 333444445556666666654211
Q ss_pred EEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHH
Q 005991 232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYE 311 (666)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~ 311 (666)
...+.++.........+.....++++++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.++
T Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 246 (544)
T 3o83_A 168 -DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFM 246 (544)
T ss_dssp -SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred -ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEee
Confidence 0245555544333222334567899999999999999999999999999999988888889999999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005991 312 RAN--QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV 388 (666)
Q Consensus 312 ~~~--~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~ 388 (666)
+.. ++.++..|+++++.+ +++..+++.++++++|++.++|+++..+++......
T Consensus 247 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------- 303 (544)
T 3o83_A 247 LSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK----------------------- 303 (544)
T ss_dssp HHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-----------------------
T ss_pred cchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-----------------------
Confidence 875 778899999999987 799999999999999999999999998876421100
Q ss_pred cCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCC-CCCCCccC
Q 005991 389 SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-NLSGHVGS 467 (666)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (666)
...+++|.+++||+++++++.+++.+.+|+++++.||+||++..++...... ...+++|+
T Consensus 304 -------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~ 364 (544)
T 3o83_A 304 -------------------DQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGR 364 (544)
T ss_dssp -------------------HHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCE
T ss_pred -------------------ccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCce
Confidence 0004899999999999999999999989999999999999875444322211 23468999
Q ss_pred Cc-cCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCC
Q 005991 468 PN-PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN 546 (666)
Q Consensus 468 p~-~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d 546 (666)
|+ ++++++|+| ++++.++.|+ .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+||
T Consensus 365 p~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd 440 (544)
T 3o83_A 365 PISSDDEIKIVD-EQYREVPEGE---IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKD 440 (544)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-
T ss_pred ecCCCcEEEEEC-CCCCCCCCCC---eeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCC
Confidence 96 899999999 6777777665 899999999999999999999999999999999999999999999999999999
Q ss_pred eEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC-----hhHHHHHHHHcCCCcccccccccCcc
Q 005991 547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD-----PDVLKDWAASQGIKVIYCFSFRANSH 618 (666)
Q Consensus 547 ~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~l~~~~~~~~l~~~~~~~~~~p~~ 618 (666)
+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++. .+++++++++..++ .|++|+.
T Consensus 441 ~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~~~~l~-----~~~~P~~ 514 (544)
T 3o83_A 441 QINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELGIA-----QYKLPDQ 514 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHHHHhCCCC-----cccCCcE
Confidence 9996 8999999999999999999999999987654 5788998864 35677888873377 9999999
Q ss_pred hhHHH-HHHHHhhhhhhhhhccc
Q 005991 619 VIFIA-LIHNLCQLYSSKELFRS 640 (666)
Q Consensus 619 i~~v~-~~~~~~gK~~r~~l~~~ 640 (666)
|.+++ +|++.+||++|++|++.
T Consensus 515 i~~v~~lP~t~~GKi~r~~L~~~ 537 (544)
T 3o83_A 515 IKLIESLPLTAVGKVDKKQLRSI 537 (544)
T ss_dssp -----------------------
T ss_pred EEEeccCCCCCCCCCcHHHHHHH
Confidence 99995 88888899999999875
No 8
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2.8e-79 Score=675.93 Aligned_cols=487 Identities=20% Similarity=0.255 Sum_probs=411.2
Q ss_pred CCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005991 75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV 154 (666)
Q Consensus 75 ~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~ 154 (666)
.+...|+.++|.++++++||++|+++. + ..+++||+||+++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~---~----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 84 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEP---S----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL 84 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEG---G----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeC---C----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHH
Confidence 456789999999999999999999764 2 235799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEE
Q 005991 155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234 (666)
Q Consensus 155 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (666)
+|||+++|+++||+++.++.+++.+++++++++++|++......+.......+....++.... ..
T Consensus 85 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 149 (517)
T 3r44_A 85 FYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG---------------AD 149 (517)
T ss_dssp HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE---------------HH
T ss_pred HHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC---------------cc
Confidence 999999999999999999999999999999999999999887777665544332221111100 01
Q ss_pred ehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH
Q 005991 235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314 (666)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~ 314 (666)
++.+....... ..+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++..
T Consensus 150 ~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 228 (517)
T 3r44_A 150 SLAERLRSAAA-DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTT 228 (517)
T ss_dssp HHHHHHHHCCC-CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHH
T ss_pred cHHHHhhccCc-CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHH
Confidence 23333333222 22334567899999999999999999999999999999988888889999999999999999999988
Q ss_pred HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005991 315 QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP 393 (666)
Q Consensus 315 ~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~ 393 (666)
.+.+++.|+++++.+ +++..+++.++++++|++.++|+++..|.+....
T Consensus 229 ~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------ 278 (517)
T 3r44_A 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEF------------------------------ 278 (517)
T ss_dssp HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHH------------------------------
T ss_pred HHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc------------------------------
Confidence 666666999999887 7999999999999999999999999988663110
Q ss_pred ChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC--CCCCCCccCCccC
Q 005991 394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG--DNLSGHVGSPNPA 471 (666)
Q Consensus 394 ~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~ 471 (666)
.....+++|.+++||+++++++.+.+... +++++++||+||+++.++..... ....+++|+|.++
T Consensus 279 ------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~ 345 (517)
T 3r44_A 279 ------------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMF 345 (517)
T ss_dssp ------------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTT
T ss_pred ------------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCC
Confidence 11112589999999999999999999886 99999999999998766654433 3567899999999
Q ss_pred cEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcC
Q 005991 472 CEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLA 551 (666)
Q Consensus 472 ~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~ 551 (666)
++++|+| +++...+.+ .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+||+||+
T Consensus 346 ~~~~i~d-~~~~~~~~g----~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 418 (517)
T 3r44_A 346 TDVAVRG-DDGVIREHG----EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIIS- 418 (517)
T ss_dssp EEEEEEC-TTSCEESSE----EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEE-
T ss_pred eEEEEEC-CCCCCCCCC----CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEE-
Confidence 9999999 454444433 69999999999999999999999999 7999999999999999999999999999997
Q ss_pred CeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc-----ChhHHHHHHHHcCCCcccccccccCcchhHHH
Q 005991 552 QGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV-----DPDVLKDWAASQGIKVIYCFSFRANSHVIFIA 623 (666)
Q Consensus 552 ~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~ 623 (666)
+|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+. ++++++++++++ |+ .|++|+.|.+++
T Consensus 419 ~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~-L~-----~~~~P~~i~~v~ 492 (517)
T 3r44_A 419 GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTR-LA-----RYKLPKKVIFAE 492 (517)
T ss_dssp TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTCCHHHHHHHHHHH-SC-----GGGSCSEEEECS
T ss_pred CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCCCCHHHHHHHHHHh-CC-----CCCCCCEEEEEC
Confidence 8999999999999999999999999987654 467777753 357899999999 98 999999999995
Q ss_pred -HHHHHhhhhhhhhhccc
Q 005991 624 -LIHNLCQLYSSKELFRS 640 (666)
Q Consensus 624 -~~~~~~gK~~r~~l~~~ 640 (666)
+|++.+||++|++|++.
T Consensus 493 ~lP~t~~GKi~R~~L~~~ 510 (517)
T 3r44_A 493 AIPRNPTGKILKTVLREQ 510 (517)
T ss_dssp CCCBCTTCCBCHHHHHHH
T ss_pred CCCCCCCcCccHHHHHHH
Confidence 88888899999999875
No 9
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.6e-79 Score=675.53 Aligned_cols=482 Identities=26% Similarity=0.354 Sum_probs=407.1
Q ss_pred HHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcC
Q 005991 83 DNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYS 162 (666)
Q Consensus 83 ~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 162 (666)
++|.+.++++||++|+... +. ..+++||+||+++++++|++|+++|+++||+|+|+++|+++|++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~---~~---~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIE---TA---AGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEE---ET---TCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEe---cC---CCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 5788999999999999764 11 12469999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhc
Q 005991 163 YISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQ 242 (666)
Q Consensus 163 ~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+++||+++.++.+++.+++++++++++|++....+.+......... .++.++.... ..+.+....
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~ 142 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGR-------------GSLTDAAAG 142 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSC-------------SHHHHHHHT
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCcc-------------cccchhhhc
Confidence 9999999999999999999999999999998765544443333221 2333332110 112222221
Q ss_pred CCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH-HHHHHHh
Q 005991 243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QIVSVYY 321 (666)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~ 321 (666)
. ....+.....++|+++|+|||||||.||||++||+++.+.+......++++++|++++.+|++|.+++.. .+.+++.
T Consensus 143 ~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 221 (503)
T 4fuq_A 143 A-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFA 221 (503)
T ss_dssp S-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHT
T ss_pred C-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHh
Confidence 1 1122334567899999999999999999999999999999988888889999999999999999999765 6678999
Q ss_pred CcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHH
Q 005991 322 GVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRL 400 (666)
Q Consensus 322 G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~ 400 (666)
|+++++.+ +++..+++.++ ++|+++++|+++..+++....
T Consensus 222 g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~------------------------------------- 262 (503)
T 4fuq_A 222 RGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRL------------------------------------- 262 (503)
T ss_dssp TCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTC-------------------------------------
T ss_pred CCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCc-------------------------------------
Confidence 99999887 79999999998 899999999999988652100
Q ss_pred hhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEEEEecC
Q 005991 401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVP 480 (666)
Q Consensus 401 ~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~ 480 (666)
.....+++|.+++||+++++++.+.|.+.+|++++|.||+||++..++.........+++|+|+++++++|+|++
T Consensus 263 -----~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 337 (503)
T 4fuq_A 263 -----TKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPE 337 (503)
T ss_dssp -----STTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTT
T ss_pred -----cccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECC
Confidence 000114899999999999999999999999999999999999987655444445667899999999999999977
Q ss_pred CCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHH
Q 005991 481 EMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEK 560 (666)
Q Consensus 481 ~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~e 560 (666)
+++.++.|+ .|||+|+|++++.|||++|+.|+++|..+|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|
T Consensus 338 ~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~e 413 (503)
T 4fuq_A 338 TGKELPRGD---IGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT-GGFNVYPKE 413 (503)
T ss_dssp TCCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-TTEEECHHH
T ss_pred CCCCCcCCC---ceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-CCEEECHHH
Confidence 778777775 8999999999999999999999999988999999999999999999999999999997 899999999
Q ss_pred HHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhh
Q 005991 561 IENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQ 630 (666)
Q Consensus 561 IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~g 630 (666)
||++|.+||+|.+|+|++.++. +.++|+|+++ .++++++++++ |+ .|++|+.|.+++ +|++.+|
T Consensus 414 IE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~-L~-----~~~~P~~i~~v~~lP~t~~G 487 (503)
T 4fuq_A 414 IESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQ-LA-----KFKMPKKVIFVDDLPRNTMG 487 (503)
T ss_dssp HHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTT-BC-----GGGCCSEEEEESCCCBCTTS
T ss_pred HHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhh-cc-----cCCCCCEEEEECCCCCCccc
Confidence 9999999999999999987643 5788999864 46899999988 88 999999999995 8888889
Q ss_pred hhhhhhhccc
Q 005991 631 LYSSKELFRS 640 (666)
Q Consensus 631 K~~r~~l~~~ 640 (666)
|++|++|++.
T Consensus 488 Ki~R~~L~~~ 497 (503)
T 4fuq_A 488 KVQKNVLRET 497 (503)
T ss_dssp CBCHHHHHHH
T ss_pred ceeHHHHHHH
Confidence 9999999876
No 10
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=8.2e-79 Score=676.67 Aligned_cols=494 Identities=23% Similarity=0.298 Sum_probs=418.7
Q ss_pred CCCCHHH-HHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991 77 EIGTLHD-NFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD 155 (666)
Q Consensus 77 ~~~tl~~-~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (666)
...|+.+ +|.++++++ |++|+++. + ..+++||+||+++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus 23 ~~~~l~~~~l~~~~~~~-~~~A~~~~---~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 94 (548)
T 2d1s_A 23 GSAGTQLRKYMERYAKL-GAIAFTNA---V----TGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPV 94 (548)
T ss_dssp SCHHHHHHHHHHHHHHH-TCEEEEET---T----TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHH
T ss_pred CcCcHHHHHHHhhhccc-CCceEEEc---C----CCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Confidence 3458999 899999999 99999752 1 1256999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991 156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235 (666)
Q Consensus 156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (666)
|||+++|++++|+++.++.+++.+++++++++++|++....+.+......++....++.++..... . ...+
T Consensus 95 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~ 165 (548)
T 2d1s_A 95 IAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDY-------R--GYQC 165 (548)
T ss_dssp HHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCB-------T--TBCB
T ss_pred HHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccc-------c--cccc
Confidence 999999999999999999999999999999999999998877776666566655666665432100 0 1235
Q ss_pred hHHHHhcCCCCCCCCCCCC-----C-CCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc---cccCCCcEEEEcCCh
Q 005991 236 YLQLQSQGCSSPQPFCPPK-----P-EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPL 306 (666)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl 306 (666)
|+++...+.....+..... + +++++|+|||||||.||||++||+++.+.+...... +++.++|++++++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 245 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPF 245 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccH
Confidence 6666554322101111122 4 899999999999999999999999999888776665 678899999999999
Q ss_pred HHHHHHHH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005991 307 AHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK 384 (666)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~ 384 (666)
+|.+++.. ++.++ .|+++++.+ +++..+++.|+++++|+++++|+++..|.+...
T Consensus 246 ~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 302 (548)
T 2d1s_A 246 HHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL---------------------- 302 (548)
T ss_dssp TSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC----------------------
T ss_pred HHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc----------------------
Confidence 99999987 45566 999999887 799999999999999999999999998865200
Q ss_pred HHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCCCCCCC
Q 005991 385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGDNLSG 463 (666)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~ 463 (666)
.+. ...+++|.+++||+++++++.+++.+.+ ++.+++.||+||++..++.........+
T Consensus 303 ------------~~~--------~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 362 (548)
T 2d1s_A 303 ------------LNK--------YDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPG 362 (548)
T ss_dssp ------------GGG--------SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTT
T ss_pred ------------ccc--------ccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCC
Confidence 000 0014899999999999999999999988 6889999999999877666544446678
Q ss_pred CccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEcc
Q 005991 464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR 543 (666)
Q Consensus 464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (666)
++|+|+|+++++|+|+++++.++.|+ .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 363 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR 439 (548)
T 2d1s_A 363 ASGKVVPLFKAKVIDLDTKKSLGPNR---RGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDR 439 (548)
T ss_dssp CCBEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEE
T ss_pred CCCccCCCceEEEEeCCcCccCCCCC---CeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEecc
Confidence 99999999999999977777777665 899999999999999999999999998899999999999999999999999
Q ss_pred CCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccc
Q 005991 544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFR 614 (666)
Q Consensus 544 ~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~ 614 (666)
+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++ .++++++++++ |+ .|+
T Consensus 440 ~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~-l~-----~~~ 512 (548)
T 2d1s_A 440 LKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQ-VS-----NAK 512 (548)
T ss_dssp GGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTT-SC-----GGG
T ss_pred ccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHh-cc-----ccc
Confidence 9999997 8999999999999999999999999997654 5789999863 46899999988 88 999
Q ss_pred cCc-chhHHH-HHHHHhhhhhhhhhccc
Q 005991 615 ANS-HVIFIA-LIHNLCQLYSSKELFRS 640 (666)
Q Consensus 615 ~p~-~i~~v~-~~~~~~gK~~r~~l~~~ 640 (666)
+|+ .|.+++ +|++.+||++|++|++.
T Consensus 513 ~p~~~i~~v~~lP~t~~GKi~r~~L~~~ 540 (548)
T 2d1s_A 513 RLRGGVRFVDEVPKGLTGKIDGRAIREI 540 (548)
T ss_dssp SCTTCEEECSSCCBCTTSCBCHHHHHHH
T ss_pred cccccEEEccCCCCCCcchhHHHHHHHH
Confidence 999 898885 88888899999999875
No 11
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=4.3e-78 Score=666.03 Aligned_cols=483 Identities=20% Similarity=0.301 Sum_probs=331.7
Q ss_pred CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991 77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH 156 (666)
Q Consensus 77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (666)
...|+.++|+++++++||++|+.+. + +++||+||+++++++|++|+++|+++||+|+|+++|+++|++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD---G------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC---C------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3479999999999999999999753 2 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEeh
Q 005991 157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY 236 (666)
Q Consensus 157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (666)
||+++|+++||+++.++.+++.+++++++++++|++......+......++.++.++.+++... .+
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 140 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG--------------PF 140 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS--------------SC
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc--------------Ch
Confidence 9999999999999999999999999999999999999888776666677777888877664211 12
Q ss_pred HHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHH
Q 005991 237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI 316 (666)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 316 (666)
.++.........+.....++|+++|+|||||||.||||++||+++.+.+.+....+++.++|++++++|++|.+++...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 220 (509)
T 3ivr_A 141 APFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML 220 (509)
T ss_dssp EEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHH
T ss_pred hhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHH
Confidence 22222122222334456789999999999999999999999999999998888888999999999999999999998877
Q ss_pred HHHHhCcEEEE-ecCCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCCh
Q 005991 317 VSVYYGVAVGF-YQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSK 395 (666)
Q Consensus 317 ~~l~~G~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~ 395 (666)
.++..|++.++ ..+++..+++.|+++++|++.++|+++..+++... .
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-----~--------------------------- 268 (509)
T 3ivr_A 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA-----P--------------------------- 268 (509)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC-----G---------------------------
T ss_pred HHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc-----c---------------------------
Confidence 65555555444 44899999999999999999999999999876310 0
Q ss_pred hhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEE
Q 005991 396 MWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEI 474 (666)
Q Consensus 396 ~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v 474 (666)
...+++|.++.||++ ++.+.+.+.+ ++++++.||+||++++++.....+ ...++|+|++++++
T Consensus 269 ------------~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~G~p~~~~~~ 332 (509)
T 3ivr_A 269 ------------AQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRD-RPKSAGRPLFWRTV 332 (509)
T ss_dssp ------------GGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGG-STTSCCEECTTCEE
T ss_pred ------------cchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCcccc-CCCcccccCCCcEE
Confidence 000489999999987 7788888877 999999999999998766554332 34569999999999
Q ss_pred EEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccC--CCeEEcCC
Q 005991 475 KLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK--KNIFKLAQ 552 (666)
Q Consensus 475 ~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~--~d~ikl~~ 552 (666)
+|+| +++..++.|+ .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+ ||+||+ +
T Consensus 333 ~i~d-~~~~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~-~ 406 (509)
T 3ivr_A 333 AVVD-AEDRPLPPGE---VGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKT-G 406 (509)
T ss_dssp EEEC-TTSCBCCTTC---CEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEEC----------
T ss_pred EEEC-CCCCCCCCCC---ceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCCCCcceeEEE-C
Confidence 9999 5567776665 89999999999999999999999999 5999999999999999999999999 999996 8
Q ss_pred eeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCcccccccccCcchhHHH
Q 005991 553 GEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCFSFRANSHVIFIA 623 (666)
Q Consensus 553 G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~ 623 (666)
|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++. .++++++++++ |+ .|++|+.|.+++
T Consensus 407 G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~-L~-----~~~~P~~i~~v~ 480 (509)
T 3ivr_A 407 GENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASL-IA-----RYKKPKHVVFVE 480 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhh-Cc-----ccCCCcEEEEec
Confidence 999999999999999999999999987654 5688888863 36788999988 88 999999999995
Q ss_pred -HHHHHhhhhhhhhhccchh
Q 005991 624 -LIHNLCQLYSSKELFRSRC 642 (666)
Q Consensus 624 -~~~~~~gK~~r~~l~~~~~ 642 (666)
+|++.+||++|++|++...
T Consensus 481 ~lP~t~~GKidr~~Lr~~~~ 500 (509)
T 3ivr_A 481 ALPKDAKGAIDRAAVKTAHG 500 (509)
T ss_dssp --------------------
T ss_pred CCCCCCCCCccHHHHHHHHh
Confidence 8888889999999998743
No 12
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.8e-77 Score=668.30 Aligned_cols=492 Identities=18% Similarity=0.242 Sum_probs=420.4
Q ss_pred CCCCHHHHHHHHHHh-----CCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCHh
Q 005991 77 EIGTLHDNFIYAVEN-----YPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPE 150 (666)
Q Consensus 77 ~~~tl~~~~~~~a~~-----~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e 150 (666)
..+++.++|++++++ +||++|+.+. ++. ++.+++||+||.++++++|++|.+. |+++||+|+|+++|+++
T Consensus 36 ~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e 111 (570)
T 3c5e_A 36 KFNFASDVLDHWADMEKAGKRPPSPALWWV---NGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE 111 (570)
T ss_dssp BCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH
T ss_pred cccHHHHHHHHHHhhccccCCCCceEEEEE---cCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH
Confidence 456678999999999 9999999875 321 2347899999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCC
Q 005991 151 WLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSG 230 (666)
Q Consensus 151 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~ 230 (666)
|++++|||+++|+++||+++.++.+++.+++++++++++|++....+.+......++.++.++.++.... .+
T Consensus 112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 183 (570)
T 3c5e_A 112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC--------DG 183 (570)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCC--------TT
T ss_pred HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCc--------cc
Confidence 9999999999999999999999999999999999999999999888877777677777777777654211 01
Q ss_pred cEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHH--HHhhcccccccCCCcEEEEcCChHH
Q 005991 231 VKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS--NVAGFSLMVQFYPSDIYMSYLPLAH 308 (666)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~--~~~~~~~~~~~~~~d~~l~~~pl~h 308 (666)
..+++++....... .+.....++|+++|+|||||||.||||++||+ ++. ..... ..+++.++|++++++|++|
T Consensus 184 --~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~ 258 (570)
T 3c5e_A 184 --WLNFKKLLNEASTT-HHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGW 258 (570)
T ss_dssp --SEEHHHHHHHSCSC-CCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTS
T ss_pred --cccHHHHhhccccc-ccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHH
Confidence 24566666543321 22234578999999999999999999999999 444 44444 5678899999999999999
Q ss_pred HHHHHH-HHHHHHhCcEEEEec---CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005991 309 IYERAN-QIVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK 384 (666)
Q Consensus 309 ~~~~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~ 384 (666)
.+++.. ++.++..|+++++.+ +++..+++.|+++++|+++++|+++..|.+.. .
T Consensus 259 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~------------------- 316 (570)
T 3c5e_A 259 ILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---L------------------- 316 (570)
T ss_dssp HHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---T-------------------
T ss_pred HHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---c-------------------
Confidence 999875 778899999999885 69999999999999999999999999886520 0
Q ss_pred HHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCC
Q 005991 385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGH 464 (666)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~ 464 (666)
.. ...+++|.+++||+++++++.+.|.+.+|+++++.||+||++..++.........++
T Consensus 317 -------~~--------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~ 375 (570)
T 3c5e_A 317 -------SS--------------YKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGY 375 (570)
T ss_dssp -------TT--------------CCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTC
T ss_pred -------cc--------------cccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCc
Confidence 00 001489999999999999999999998899999999999998766555444566789
Q ss_pred ccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEe-----CCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEE
Q 005991 465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVR-----GPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLK 539 (666)
Q Consensus 465 vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~-----g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~ 539 (666)
+|+|+++++++|+| ++++.++.|+ .|||+|+ |++++.|||++|+.|++.| .+|||+|||+|++|+||+|+
T Consensus 376 vG~p~~~~~v~i~d-~~g~~~~~G~---~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~ 450 (570)
T 3c5e_A 376 MGTAASCYDVQIID-DKGNVLPPGT---EGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQ 450 (570)
T ss_dssp CCEECTTCCEEEEC-TTSCBCCTTC---CEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEE
T ss_pred ccccCCCceEEEEC-CCCCCCCCCC---CCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEE
Confidence 99999999999999 5677777665 8999999 9999999999999999999 58999999999999999999
Q ss_pred EEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh-----------hHHHHHHHHcCC
Q 005991 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP-----------DVLKDWAASQGI 605 (666)
Q Consensus 540 i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-----------~~l~~~~~~~~l 605 (666)
|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.+ ++++++++++ +
T Consensus 451 ~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~-L 528 (570)
T 3c5e_A 451 FMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSV-T 528 (570)
T ss_dssp EEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHH-S
T ss_pred EEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhh-C
Confidence 99999999997 8999999999999999999999999987653 57889998642 4678889888 8
Q ss_pred CcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991 606 KVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS 640 (666)
Q Consensus 606 ~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~ 640 (666)
+ .|++|+.|.+++ +|++.+||++|++|++.
T Consensus 529 ~-----~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 559 (570)
T 3c5e_A 529 A-----PYKYPRKIEFVLNLPKTVTGKIQRAKLRDK 559 (570)
T ss_dssp C-----GGGSCSEEEEESCCCBCTTCCBCHHHHHHH
T ss_pred c-----cccCCcEEEEeccCCCCCCcCCcHHHHHHH
Confidence 8 999999999995 88888899999999875
No 13
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=8e-78 Score=662.78 Aligned_cols=477 Identities=19% Similarity=0.257 Sum_probs=397.0
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991 78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA 157 (666)
Q Consensus 78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (666)
++|+.++|.++++++||++|+.+. ++ .+++||+||+++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---AR----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TT----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CC----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 468999999999999999999753 11 25799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEE--ccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991 158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC--IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235 (666)
Q Consensus 158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (666)
|+++|+++||+++.++.+++.+++++++++++|+ +....+.+.. ..+.++ ++ .
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~---------------------~ 128 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ---SGSGAR-II---------------------F 128 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHH---HCCCCE-EE---------------------E
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhh---ccccce-eE---------------------E
Confidence 9999999999999999999999999999999999 6655444311 122222 22 2
Q ss_pred hHHHHhcCC----CCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccccccc--CCCcEEEEcCChHHH
Q 005991 236 YLQLQSQGC----SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF--YPSDIYMSYLPLAHI 309 (666)
Q Consensus 236 ~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~h~ 309 (666)
++++...+. ....+.....++++++|+|||||||.||||++||+++.+.+......+++ .++|++++.+|++|.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 208 (504)
T 1t5h_X 129 LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208 (504)
T ss_dssp GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSH
T ss_pred ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhc
Confidence 233222110 11111234578999999999999999999999999999888877766777 789999999999999
Q ss_pred HHHHH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Q 005991 310 YERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAI 387 (666)
Q Consensus 310 ~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~ 387 (666)
+++.. ++.++..|+++++.+ +++..+++.|+++++|+++++|+++..|.+......
T Consensus 209 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 266 (504)
T 1t5h_X 209 VGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG---------------------- 266 (504)
T ss_dssp HHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------------
T ss_pred chHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------------
Confidence 99854 778999999999987 799999999999999999999999998876310000
Q ss_pred HcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccC
Q 005991 388 VSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGS 467 (666)
Q Consensus 388 ~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~ 467 (666)
.. ...+++|.+++||+++++++.+++++.+++.+++.||+||++. +.. .. ....+++|.
T Consensus 267 ----~~--------------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~-~~-~~~~~~~g~ 325 (504)
T 1t5h_X 267 ----SS--------------LKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLY-MR-QPKTGTEMA 325 (504)
T ss_dssp ----CC--------------CCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEE-EE-SCSSSSEEB
T ss_pred ----cc--------------ccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccc-cc-CCCCCcccc
Confidence 00 0014899999999999999999999999999999999999932 222 11 345688999
Q ss_pred CccCcEEEEEecCCC--CCCCCCCCCCccEEEEe-CCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccC
Q 005991 468 PNPACEIKLVDVPEM--NYTSEDQPHPRGEICVR-GPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK 544 (666)
Q Consensus 468 p~~~~~v~ivd~~~~--~~~~~~~~~~~GEl~v~-g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~ 544 (666)
|.++++++|+|.++. +.++.| +.|||+|+ |++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+
T Consensus 326 p~~~~~~~i~~~~~~~~~~~~~g---~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~ 401 (504)
T 1t5h_X 326 PGFFSEVRIVRIGGGVDEIVANG---EEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRV 401 (504)
T ss_dssp CCTTCCEEEECTTSCTTCBCCTT---CCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEG
T ss_pred CCCCCceeEEeccCCCCCcCCCC---CcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcc
Confidence 999999999994331 445544 48999999 9999999999999999999 7899999999999999999999999
Q ss_pred CCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHH-cCCCcccccccc
Q 005991 545 KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAAS-QGIKVIYCFSFR 614 (666)
Q Consensus 545 ~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~-~~l~~~~~~~~~ 614 (666)
||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++ .+++++++++ + |+ .|+
T Consensus 402 dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~-L~-----~~~ 474 (504)
T 1t5h_X 402 DDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSE-LA-----DFK 474 (504)
T ss_dssp GGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHTSS-CC-----GGG
T ss_pred cCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhhcc-Cc-----ccc
Confidence 999997 8999999999999999999999999998764 5799999964 4689999998 6 88 999
Q ss_pred cCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991 615 ANSHVIFIA-LIHNLCQLYSSKELFRS 640 (666)
Q Consensus 615 ~p~~i~~v~-~~~~~~gK~~r~~l~~~ 640 (666)
+|+.|.+++ +|++.+||++|++|++.
T Consensus 475 ~P~~i~~v~~lP~t~~GKi~r~~L~~~ 501 (504)
T 1t5h_X 475 RPKRYFILDQLPKNALNKVLRRQLVQQ 501 (504)
T ss_dssp SCSEEEECSCCCBCTTSCBCHHHHHHH
T ss_pred cceEEEEhhhCCCCCCCCEeHHHHHHH
Confidence 999999995 88888899999999863
No 14
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=7.9e-78 Score=681.28 Aligned_cols=508 Identities=16% Similarity=0.232 Sum_probs=420.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991 76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD 155 (666)
Q Consensus 76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (666)
...++++++|+++++++||++|+++. +...++.+.+||+||+++++++|++|+++|+++||+|+|+++|++++++++
T Consensus 73 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~ 149 (652)
T 1pg4_A 73 GTLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149 (652)
T ss_dssp CEECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHH
T ss_pred CChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34577899999999999999999875 322334678999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH---------HHHHHhhhcCC--CceEEEEeCCCCCCCCC
Q 005991 156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL---------NTLLSFISEIP--SVHLIVVVGGKDEHLPS 224 (666)
Q Consensus 156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~l~~ii~~~~~~~~~~~ 224 (666)
|||+++|++++|+++.++++++.+++++++++++|+++... ..+.+.....+ .++.+++++.......
T Consensus 150 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~- 228 (652)
T 1pg4_A 150 LACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID- 228 (652)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC-
T ss_pred HHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc-
Confidence 99999999999999999999999999999999999986532 33444443332 4566777654321110
Q ss_pred CCCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHh-hcccccccCCCcEEEEc
Q 005991 225 LPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA-GFSLMVQFYPSDIYMSY 303 (666)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~ 303 (666)
.. .....+|+++...... ..+.....++|+++|+|||||||.||||++||++++..+. .....+++.++|+++++
T Consensus 229 ~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~ 304 (652)
T 1pg4_A 229 WQ---EGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT 304 (652)
T ss_dssp CC---BTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred cc---CCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEc
Confidence 00 1123568887754332 1223345689999999999999999999999999876653 34455788999999999
Q ss_pred CChHHHHHHHH-HHHHHHhCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHH
Q 005991 304 LPLAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFT 377 (666)
Q Consensus 304 ~pl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~ 377 (666)
+|++|+++... ++.+|+.|+++++++ .++..+++.|+++++|+++++|+++..|.+......
T Consensus 305 ~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------ 372 (652)
T 1pg4_A 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI------------ 372 (652)
T ss_dssp SCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT------------
T ss_pred cCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcccc------------
Confidence 99999999854 778999999999987 388999999999999999999999998865211000
Q ss_pred HHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC---CccccCcccchhhhhhhc
Q 005991 378 AAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCIISA 454 (666)
Q Consensus 378 ~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~~~~~ 454 (666)
.....++||.+++||+++++++.+++.+.+| +++++.||+||+++.++.
T Consensus 373 ----------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~ 424 (652)
T 1pg4_A 373 ----------------------------EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT 424 (652)
T ss_dssp ----------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBC
T ss_pred ----------------------------ccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceec
Confidence 0001158999999999999999999998888 899999999999876665
Q ss_pred cCCC--CCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeC--CCcCccccCChhhhhhccC--CCCeeeccc
Q 005991 455 IDKG--DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVID--GDGWLHTGD 528 (666)
Q Consensus 455 ~~~~--~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~~--~~gw~~TGD 528 (666)
..+. ....+++|+|++|++++|+| ++++.++.+. .|||+|+| |++++|||++|+.+.+.|. .+|||+|||
T Consensus 425 ~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~---~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGD 500 (652)
T 1pg4_A 425 PLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGAT---EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGD 500 (652)
T ss_dssp CCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSE---EEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEE
T ss_pred CCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCc---eEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCc
Confidence 4432 35678999999999999999 5666666554 89999999 7999999999999988762 489999999
Q ss_pred EEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh---------hHH
Q 005991 529 IGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP---------DVL 596 (666)
Q Consensus 529 lg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l 596 (666)
+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|+|.+++ +.++|+|++++ +++
T Consensus 501 lg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l 579 (652)
T 1pg4_A 501 GARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEV 579 (652)
T ss_dssp EEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHH
T ss_pred EEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHH
Confidence 9999999999999999999998 8999999999999999999999999997643 57999999742 578
Q ss_pred HHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccchh
Q 005991 597 KDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRSRC 642 (666)
Q Consensus 597 ~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~~ 642 (666)
+++++++ |+ .|++|+.|++++ +|++.+||++|++|++.-.
T Consensus 580 ~~~l~~~-l~-----~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 620 (652)
T 1pg4_A 580 RNWVRKE-IG-----PLATPDVLHWTDSLPKTRSGKIMRRILRKIAA 620 (652)
T ss_dssp HHHHHHH-TC-----GGGCCSEEEECSCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHHh-CC-----CCcCCeEEEEcCCCCCCCCccchHHHHHHHHh
Confidence 8999998 88 999999999995 8888889999999998733
No 15
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=3.3e-78 Score=675.36 Aligned_cols=470 Identities=18% Similarity=0.224 Sum_probs=319.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991 76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD 155 (666)
Q Consensus 76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (666)
+...+++++|+++++++||++|+.+. + +.+||+||+++++++|++|+++|+++||+|+|+++|+++|++++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45679999999999999999999753 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991 156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235 (666)
Q Consensus 156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (666)
|||+++|+++||+++.++.+++.+++++++++++|++..... .++....++..+...
T Consensus 143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~---------------- 199 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSG-------RLTGTTTLYVEDEAA---------------- 199 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTT-------SSCSSEEEECCC-------------------
T ss_pred HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhh-------cccCCcceeeecccc----------------
Confidence 999999999999999999999999999999999999875432 223333332211100
Q ss_pred hHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHH
Q 005991 236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQ 315 (666)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (666)
.............++|+++|+|||||||.||||++||+++.+.+.. ...+++.++|++++++|++|..+...+
T Consensus 200 ------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 272 (570)
T 4gr5_A 200 ------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLEL 272 (570)
T ss_dssp ----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHH
T ss_pred ------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHH
Confidence 0001111223457899999999999999999999999999877665 445678899999999999998777778
Q ss_pred HHHHHhCcEEEEec---CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005991 316 IVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT 392 (666)
Q Consensus 316 ~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~ 392 (666)
+.+++.|+++++.+ .++..+++.|+++++|++.++|+++..|.+.....
T Consensus 273 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------------------- 324 (570)
T 4gr5_A 273 FGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEA---------------------------- 324 (570)
T ss_dssp HHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGG----------------------------
T ss_pred HHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhh----------------------------
Confidence 88999999999976 68999999999999999999999999887531100
Q ss_pred CChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCC----CCCCCCccC
Q 005991 393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG----DNLSGHVGS 467 (666)
Q Consensus 393 ~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~ 467 (666)
.+++|.+++||+++++++.+.+.+.+ +++++++||+||++++++..... .....++|+
T Consensus 325 -----------------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 387 (570)
T 4gr5_A 325 -----------------FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387 (570)
T ss_dssp -----------------GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBE
T ss_pred -----------------CCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccce
Confidence 14899999999999999998888776 89999999999998766543321 234567999
Q ss_pred CccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCC--------CCeeecccEEEEecCCcEE
Q 005991 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG--------DGWLHTGDIGLWLPGGRLK 539 (666)
Q Consensus 468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~--------~gw~~TGDlg~~~~dG~l~ 539 (666)
|+++++++|+| +++..++.|+ .|||||+|++++.|||++|+.|+++|.. +|||+|||+|++|+||+|+
T Consensus 388 p~~~~~v~i~d-~~~~~~~~G~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~ 463 (570)
T 4gr5_A 388 PLAGKRAYVLD-DDLKPAANGA---LGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLE 463 (570)
T ss_dssp ECTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEE
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---cEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEE
Confidence 99999999999 6677777665 8999999999999999999999999843 3799999999999999999
Q ss_pred EEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC-------hhHHHHHHHHcCCCccc
Q 005991 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD-------PDVLKDWAASQGIKVIY 609 (666)
Q Consensus 540 i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-------~~~l~~~~~~~~l~~~~ 609 (666)
|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++ +.++|+|++. .++++++++++ |+
T Consensus 464 ~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~-l~--- 538 (570)
T 4gr5_A 464 YVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEA-LP--- 538 (570)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhh-Cc---
Confidence 99999999997 8999999999999999999999999997643 5788998863 35788999988 88
Q ss_pred ccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991 610 CFSFRANSHVIFIA-LIHNLCQLYSSKELFRS 640 (666)
Q Consensus 610 ~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~ 640 (666)
.|++|+.+++++ +|++.+||++|++|++.
T Consensus 539 --~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 539 --AYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp --------------------------------
T ss_pred --cccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 999999999995 88888899999999874
No 16
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2.2e-77 Score=666.59 Aligned_cols=470 Identities=19% Similarity=0.276 Sum_probs=396.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991 76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD 155 (666)
Q Consensus 76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (666)
+...|+.++|.++++++||++|+.+. + +++||+||+++++++|++|.++|+++||+|+|+++|+++|++++
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 106 (563)
T 1amu_A 36 PRDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 106 (563)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34579999999999999999999753 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991 156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235 (666)
Q Consensus 156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (666)
|||+++|+++||+++.++.+++.+++++++++++|++......+.. +.....+..++...
T Consensus 107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~----~~~~~~~~~~~~~~---------------- 166 (563)
T 1amu_A 107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN----IQFNGQVEIFEEDT---------------- 166 (563)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT----SCCCSEEEECCCST----------------
T ss_pred HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhh----ccccCceeeecchh----------------
Confidence 9999999999999999999999999999999999999876544322 11112233222110
Q ss_pred hHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHH
Q 005991 236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQ 315 (666)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (666)
+... .......+..++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++..+
T Consensus 167 ---~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 241 (563)
T 1amu_A 167 ---IKIR--EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 241 (563)
T ss_dssp ---TTTS--CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred ---hccc--cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence 0000 00111234568999999999999999999999999999888877777889999999999999999999888
Q ss_pred HHHHHhCcEEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCC
Q 005991 316 IVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQ 391 (666)
Q Consensus 316 ~~~l~~G~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~ 391 (666)
+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+...
T Consensus 242 ~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------------- 290 (563)
T 1amu_A 242 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------------------------------- 290 (563)
T ss_dssp HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------------------------------
T ss_pred HHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------------------------------
Confidence 88999999999886 5899999999999999999999998765320
Q ss_pred CCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCC---CCCCCccCC
Q 005991 392 TPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD---NLSGHVGSP 468 (666)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p 468 (666)
...++|.+++||+++++++.+.|.+ .++++++||+||++.+++...... ....++|+|
T Consensus 291 -----------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p 351 (563)
T 1amu_A 291 -----------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAP 351 (563)
T ss_dssp -----------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEE
T ss_pred -----------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCCCCcccce
Confidence 0148999999999999999999876 478999999999987665543322 345789999
Q ss_pred ccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccC------CCCeeecccEEEEecCCcEEEEc
Q 005991 469 NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID------GDGWLHTGDIGLWLPGGRLKIID 542 (666)
Q Consensus 469 ~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~------~~gw~~TGDlg~~~~dG~l~i~G 542 (666)
+++++++|+| ++++.++.|+ .|||||+|++++.|||++|+.|+++|. ++|||+|||+|++|+||+|+|+|
T Consensus 352 ~~~~~v~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~G 427 (563)
T 1amu_A 352 IQNTQIYIVD-ENLQLKSVGE---AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLG 427 (563)
T ss_dssp CTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEE
T ss_pred eCCCEEEEEC-CCcCCCCCCC---cEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEec
Confidence 9999999999 6667776665 899999999999999999999999984 34699999999999999999999
Q ss_pred cCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc----ChhHHHHHHHHcCCCccccccccc
Q 005991 543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV----DPDVLKDWAASQGIKVIYCFSFRA 615 (666)
Q Consensus 543 R~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~l~~~~~~~~l~~~~~~~~~~ 615 (666)
|+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. +.++|+|++ +.++++++++++ |+ .|++
T Consensus 428 R~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~-L~-----~y~~ 500 (563)
T 1amu_A 428 RIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEE-LP-----TYMI 500 (563)
T ss_dssp EGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCCHHHHHHHHHHH-SC-----GGGS
T ss_pred cccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCCCHHHHHHHHHhh-Cc-----hhhC
Confidence 99999997 8999999999999999999999999987653 578999986 357899999998 98 9999
Q ss_pred CcchhHHH-HHHHHhhhhhhhhhccc
Q 005991 616 NSHVIFIA-LIHNLCQLYSSKELFRS 640 (666)
Q Consensus 616 p~~i~~v~-~~~~~~gK~~r~~l~~~ 640 (666)
|+.|++++ +|++.+||++|++|++.
T Consensus 501 P~~i~~v~~lP~t~~GKi~r~~L~~~ 526 (563)
T 1amu_A 501 PSYFIQLDKMPLTSNGKIDRKQLPEP 526 (563)
T ss_dssp CSEEEECSSCCBCTTSSBCGGGSCCC
T ss_pred CcEEEEecccCCCCCcChhHHhcCCc
Confidence 99999995 88888899999999876
No 17
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.2e-77 Score=674.19 Aligned_cols=468 Identities=18% Similarity=0.148 Sum_probs=391.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005991 76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD 155 (666)
Q Consensus 76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (666)
....|+.++|+++++++||++|+.+. + +.+||+||+++++++|++|+++|+++||+|+|+++|+++|++++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~ 94 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL 94 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 35679999999999999999999764 2 45999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991 156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235 (666)
Q Consensus 156 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (666)
|||+++|+++|||++.++.+++.++++++++++++++...... ...+.. ..
T Consensus 95 lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~-------~~~~~~----------------------~~ 145 (620)
T 4dg8_A 95 LAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTP-------ANGLPC----------------------VP 145 (620)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCC-------CTTSCE----------------------EE
T ss_pred HHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccc-------ccCCce----------------------ee
Confidence 9999999999999999999999999999999999976532110 001111 11
Q ss_pred hHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHH
Q 005991 236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQ 315 (666)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (666)
....... ..........++++++|+|||||||.||||+++|+++.+.+.. ...+++.++|++++++|++|++++..+
T Consensus 146 ~~~~~~~--~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 222 (620)
T 4dg8_A 146 VRHLPAA--PASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEI 222 (620)
T ss_dssp GGGCCCC--CCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHH
T ss_pred eccCCcC--CccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHH
Confidence 1111000 1111222356899999999999999999999999999887765 455788999999999999999999999
Q ss_pred HHHHHhCcEEEEec---CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005991 316 IVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT 392 (666)
Q Consensus 316 ~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~ 392 (666)
+.+++.|+++++.+ .++..+++.|+++++|++.++|+++..+.+....
T Consensus 223 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----------------------------- 273 (620)
T 4dg8_A 223 WGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPD----------------------------- 273 (620)
T ss_dssp HHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGG-----------------------------
T ss_pred HHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChh-----------------------------
Confidence 99999999999865 6999999999999999999999999988652000
Q ss_pred CChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCC----CCCCCCccC
Q 005991 393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG----DNLSGHVGS 467 (666)
Q Consensus 393 ~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~ 467 (666)
..+++|.+++||++++++..+.+...+ +++++|.||+||++.+++..... .....++|+
T Consensus 274 ----------------~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 337 (620)
T 4dg8_A 274 ----------------CLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGK 337 (620)
T ss_dssp ----------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBE
T ss_pred ----------------hCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCcee
Confidence 014899999999999998888776655 89999999999998876644322 245678999
Q ss_pred CccCcEEEEEecCCCCC-CCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCC-------CeeecccEEEEecCCcEE
Q 005991 468 PNPACEIKLVDVPEMNY-TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGD-------GWLHTGDIGLWLPGGRLK 539 (666)
Q Consensus 468 p~~~~~v~ivd~~~~~~-~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~-------gw~~TGDlg~~~~dG~l~ 539 (666)
|++|++++|+|. ++.. ++.|. .|||||+|+++++|||++|+.|+++|..+ +||+|||+|++++||+|+
T Consensus 338 p~~~~~~~i~d~-~~~~~~~~g~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~ 413 (620)
T 4dg8_A 338 AIAGTAVLLLDE-HGQEIAEPDR---AGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLR 413 (620)
T ss_dssp ECTTEEEEEECT-TSCBCCSSSC---CEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEE
T ss_pred cccCcEEEEECc-cCCCCCCCCC---ceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEE
Confidence 999999999994 4443 55554 89999999999999999999999999543 799999999999999999
Q ss_pred EEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC--CeEEEEEEcChhHHHHHHHHcCCCcccccccccCc
Q 005991 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN--SCLVAIVAVDPDVLKDWAASQGIKVIYCFSFRANS 617 (666)
Q Consensus 540 i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~--~~~va~vv~~~~~l~~~~~~~~l~~~~~~~~~~p~ 617 (666)
|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.++. ..++++++.+.+.++++++++ |+ .|++|+
T Consensus 414 ~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~~~~~l~~~-Lp-----~y~~P~ 486 (620)
T 4dg8_A 414 FIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASPQALLRQ-LP-----TWQRPH 486 (620)
T ss_dssp EEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCHHHHHH-SC-----GGGSCS
T ss_pred EEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHHHHHHHHHh-Ch-----hhcCCc
Confidence 99999999998 8999999999999999999999999986644 466777777777888888888 88 999999
Q ss_pred chhHHH-HHHHHhhhhhhhhhccc
Q 005991 618 HVIFIA-LIHNLCQLYSSKELFRS 640 (666)
Q Consensus 618 ~i~~v~-~~~~~~gK~~r~~l~~~ 640 (666)
.+++++ +|++.+||++|++|++.
T Consensus 487 ~~~~v~~lP~t~~GKidR~~L~~~ 510 (620)
T 4dg8_A 487 ACVRVEALPLTAHGKLDRAALLRR 510 (620)
T ss_dssp EEEECSSCCCC----CCHHHHHHH
T ss_pred EEEEECcCCCCcccCHhHHHHhhc
Confidence 999995 88999999999999764
No 18
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=4.3e-77 Score=661.25 Aligned_cols=490 Identities=21% Similarity=0.295 Sum_probs=402.7
Q ss_pred CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991 77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH 156 (666)
Q Consensus 77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (666)
.++++.++|.++++ +||++|+++. + +.+||+||+++++++|++|+++|+++||+|+|+++|+++|++++|
T Consensus 22 ~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 22 LFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred ceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 34568999999999 9999999743 1 459999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCc-eEEEEeCCCCCCCCCCCCCCCcEEEe
Q 005991 157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSV-HLIVVVGGKDEHLPSLPSTSGVKLIS 235 (666)
Q Consensus 157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (666)
||+++|+++||+++.++.+++.+++++++++++|++......+.......+.+ ..++.++..... +.....
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 163 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESE--------PRLAPL 163 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC--------------CCCB
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccc--------cccccc
Confidence 99999999999999999999999999999999999988777766655544544 455554432110 001124
Q ss_pred hHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHH-HHHHhhcccccccCCCcEEEEcCChHHHHHHHH
Q 005991 236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNL-ISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314 (666)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~ 314 (666)
++++...... ..+.....++|+++|+|||||||.||||++||+++ .+........+++.++|++++++|++|.+++..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 242 (529)
T 2v7b_A 164 FEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGN 242 (529)
T ss_dssp HHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHH
T ss_pred hhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHH
Confidence 6666553222 12233467899999999999999999999999999 666666666678899999999999999999876
Q ss_pred -HHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCC
Q 005991 315 -QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQ 391 (666)
Q Consensus 315 -~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~ 391 (666)
.+.++..|+++++.+ +++..+++.++++++|++.++|+++..++....
T Consensus 243 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------- 293 (529)
T 2v7b_A 243 GLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN----------------------------- 293 (529)
T ss_dssp HTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT-----------------------------
T ss_pred HHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc-----------------------------
Confidence 567899999999873 799999999999999999999999988764200
Q ss_pred CCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccC
Q 005991 392 TPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPA 471 (666)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~ 471 (666)
.+ ...+ .++|.+++||+++++++.+++++.+|++++++||+||++.+++.........+++|+|+++
T Consensus 294 ~~-~~~~------------~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~ 360 (529)
T 2v7b_A 294 LP-ARAD------------VAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPG 360 (529)
T ss_dssp CC-CGGG------------CCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTT
T ss_pred cc-cccC------------CceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCC
Confidence 00 0000 3799999999999999999999989999999999999976655554445677899999999
Q ss_pred cEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcC
Q 005991 472 CEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLA 551 (666)
Q Consensus 472 ~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~ 551 (666)
++++|+| ++++.++.|+ .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++++||+|+|+||+||+||+
T Consensus 361 ~~~~i~d-~~g~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~- 434 (529)
T 2v7b_A 361 YEIELRD-EAGHAVPDGE---VGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKV- 434 (529)
T ss_dssp CEEEEEC-TTSCBCCTTS---CEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCBC--
T ss_pred CEEEEEC-CCCCCCCCCC---ccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCccCCeEEE-
Confidence 9999999 6677777665 89999999999999999999999999 5899999999999999999999999999997
Q ss_pred CeeeeccHHHHHHHhcCcCcceEEEEEeCC--CCeEEEEEEcCh---------hHHHHHHHHcCCCcccccccccCcchh
Q 005991 552 QGEYVAPEKIENVYAKCKFVLQCFIYGDSF--NSCLVAIVAVDP---------DVLKDWAASQGIKVIYCFSFRANSHVI 620 (666)
Q Consensus 552 ~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~~---------~~l~~~~~~~~l~~~~~~~~~~p~~i~ 620 (666)
+|++|+|.|||++|.+||+|.+|+|++... .+.++|+|++.+ ++++++++++ |+ .|++|+.+.
T Consensus 435 ~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~-L~-----~~~~P~~i~ 508 (529)
T 2v7b_A 435 SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDR-LA-----PHKYPRDIV 508 (529)
T ss_dssp ---CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTT-SC-----TTTSCSEEE
T ss_pred CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhh-cc-----hhhCCeEEE
Confidence 899999999999999999999999998732 257889998632 4688899987 88 999999999
Q ss_pred HHH-HHHHHhhhhhhhhhcc
Q 005991 621 FIA-LIHNLCQLYSSKELFR 639 (666)
Q Consensus 621 ~v~-~~~~~~gK~~r~~l~~ 639 (666)
+++ +|++.+||++|++|++
T Consensus 509 ~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 509 FVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EESCCCBCTTSCBCHHHHHC
T ss_pred EeccCCCCCccchhHHhHhh
Confidence 995 8888889999999986
No 19
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=5.9e-77 Score=674.33 Aligned_cols=510 Identities=16% Similarity=0.203 Sum_probs=421.7
Q ss_pred CCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCCHhHHH
Q 005991 75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLL-FHGLQKGVRIGLYLINRPEWLI 153 (666)
Q Consensus 75 ~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~i~~~n~~e~~~ 153 (666)
....++++++|+++++++||++|+++. +...++.+++||+||.++++++|++|+ ++|+++||+|+|+++|++|+++
T Consensus 78 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~ 154 (663)
T 1ry2_A 78 NGQLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAII 154 (663)
T ss_dssp TCEECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHH
T ss_pred CCCccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHH
Confidence 345678999999999999999999875 322344678999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH---------HHHHHhhhcCCCceEEEEeCCCCCCCCC
Q 005991 154 VDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL---------NTLLSFISEIPSVHLIVVVGGKDEHLPS 224 (666)
Q Consensus 154 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~l~~ii~~~~~~~~~~~ 224 (666)
++|||+++|++++|+++.++.+++.++|++++++++|+++... ..+.+....++.++.+++++........
T Consensus 155 a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 234 (663)
T 1ry2_A 155 TLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA 234 (663)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC
T ss_pred HHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc
Confidence 9999999999999999999999999999999999999987542 3444555566777777777643210000
Q ss_pred CCCCCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHh-hcccccccCCCcEEEEc
Q 005991 225 LPSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA-GFSLMVQFYPSDIYMSY 303 (666)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~ 303 (666)
. ......+|.++...... ..+..+.+++|+++|+|||||||.||||++||++++..+. .....+++.++|+++++
T Consensus 235 ~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~ 310 (663)
T 1ry2_A 235 F---HAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTA 310 (663)
T ss_dssp C---CSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEEC
T ss_pred c---CCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 0 01123578777654322 1233445789999999999999999999999999876654 34445788999999999
Q ss_pred CChHHHHHHHH-HHHHHHhCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHH
Q 005991 304 LPLAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFT 377 (666)
Q Consensus 304 ~pl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~ 377 (666)
+|++|+++... ++.+|+.|+++++++ .++..+++.|+++++|+++++|+++..|.+....
T Consensus 311 ~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-------------- 376 (663)
T 1ry2_A 311 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS-------------- 376 (663)
T ss_dssp SCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT--------------
T ss_pred CCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc--------------
Confidence 99999999854 778999999999986 3789999999999999999999999887542100
Q ss_pred HHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC---CccccCcccchhhhhhhc
Q 005991 378 AAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCIISA 454 (666)
Q Consensus 378 ~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~YG~TE~~~~~~~ 454 (666)
.. + ....++||.+++||+++++++.+++.+.+| +++++.||+||+++.++.
T Consensus 377 ---------------~~---~--------~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~ 430 (663)
T 1ry2_A 377 ---------------YI---E--------NHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVT 430 (663)
T ss_dssp ---------------SS---S--------SCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEE
T ss_pred ---------------cc---c--------cCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeec
Confidence 00 0 000158999999999999999999999888 899999999999876655
Q ss_pred cCC---CCCCCCCccCCccCcEEEEEecCCCCCCCC-CCCCCccEEEEeC--CCcCccccCChhhhhhccC--CCCeeec
Q 005991 455 IDK---GDNLSGHVGSPNPACEIKLVDVPEMNYTSE-DQPHPRGEICVRG--PIVFQGYYKNEVQTREVID--GDGWLHT 526 (666)
Q Consensus 455 ~~~---~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~-~~~~~~GEl~v~g--~~v~~GY~~~~~~t~~~~~--~~gw~~T 526 (666)
..+ .....+++|+|++|++++|+|.++++.++. + +.|||+|+| |+++.|||++|+.|.+.|. .+|||+|
T Consensus 431 ~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g---~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~T 507 (663)
T 1ry2_A 431 PLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSH---AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFT 507 (663)
T ss_dssp CCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSS---CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEE
T ss_pred cCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCC---cceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEc
Confidence 433 235678999999999999999546666655 4 389999999 5899999999999998873 3899999
Q ss_pred ccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh----------
Q 005991 527 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP---------- 593 (666)
Q Consensus 527 GDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------- 593 (666)
||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++ +.++|+|++++
T Consensus 508 GDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~ 586 (663)
T 1ry2_A 508 GDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDD 586 (663)
T ss_dssp EEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC-----------
T ss_pred CCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccch
Confidence 999999999999999999999997 8999999999999999999999999997653 57999998632
Q ss_pred ------hHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccch
Q 005991 594 ------DVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRSR 641 (666)
Q Consensus 594 ------~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~ 641 (666)
++++++++++ |+ .|++|+.|++++ +|++.+||++|++|++.-
T Consensus 587 ~~~~l~~~l~~~l~~~-L~-----~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~ 635 (663)
T 1ry2_A 587 ELQDIKKHLVFTVRKD-IG-----PFAAPKLIILVDDLPKTRSGKIMRRILRKIL 635 (663)
T ss_dssp -CCSHHHHHHHHHHHH-TC-----TTTSCSEEEECSCCCBCTTSCBCHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHh-CC-----CCcCCeEEEEcCCCCCCCccCchHHHHHHHH
Confidence 4577888888 88 999999999995 888889999999999863
No 20
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.8e-76 Score=665.62 Aligned_cols=489 Identities=20% Similarity=0.254 Sum_probs=415.5
Q ss_pred CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991 77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH 156 (666)
Q Consensus 77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (666)
...|+.++|+++++ ||++|+.+. + +.+||+||+++++++|++|++.|+++||+|+++++|+++|++++|
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 45789999999987 999999753 2 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccH-----HHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCc
Q 005991 157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGV 231 (666)
Q Consensus 157 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (666)
||+++|+++||+++.++.+++.++++++++++++++.... ..+.......+.++.+...+....
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 9999999999999999999999999999999999987653 333344445566666666544211
Q ss_pred EEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHH
Q 005991 232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYE 311 (666)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~ 311 (666)
..+.+....... .....+..++++++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.++
T Consensus 163 --~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 239 (617)
T 3rg2_A 163 --HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYA 239 (617)
T ss_dssp --TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHH
T ss_pred --cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhh
Confidence 123444433222 12234457899999999999999999999999999999988888889999999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005991 312 RAN--QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV 388 (666)
Q Consensus 312 ~~~--~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~ 388 (666)
+.. .+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+.+.......
T Consensus 240 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------- 297 (617)
T 3rg2_A 240 MSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES---------------------- 297 (617)
T ss_dssp HHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC----------------------
T ss_pred hhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc----------------------
Confidence 875 788999999999987 7999999999999999999999999988764321100
Q ss_pred cCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCC-CCCCCccC
Q 005991 389 SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-NLSGHVGS 467 (666)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (666)
+. ..+++|.+++||+++++++.+++.+.++++++|.||+||++..++...... ....++|+
T Consensus 298 ----~~--------------~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 359 (617)
T 3rg2_A 298 ----RA--------------QLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGY 359 (617)
T ss_dssp ----TT--------------TTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCE
T ss_pred ----cc--------------cCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCc
Confidence 00 014899999999999999999999989999999999999986544322211 23457899
Q ss_pred Cc-cCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCC
Q 005991 468 PN-PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN 546 (666)
Q Consensus 468 p~-~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d 546 (666)
|+ ++++++|+| ++++.++.|. .|||||+|+++++|||++|+.|+++|..+|||+|||+|++++||+|+|+||+||
T Consensus 360 p~~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd 435 (617)
T 3rg2_A 360 PMCPDDEVWVAD-AEGNPLPQGE---VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKD 435 (617)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSS
T ss_pred cCCCCceEEEEC-CCCCCCCCCC---ceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCC
Confidence 97 788999999 6777777775 899999999999999999999999999999999999999999999999999999
Q ss_pred eEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC----hhHHHHHHHHcCCCcccccccccCcch
Q 005991 547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD----PDVLKDWAASQGIKVIYCFSFRANSHV 619 (666)
Q Consensus 547 ~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~----~~~l~~~~~~~~l~~~~~~~~~~p~~i 619 (666)
+||+ +|+||+|.|||++|.+||+|.+|+|++.+++ +.++|+|++. .++++++++++.++ .|++|..+
T Consensus 436 ~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~~lp-----~~~vP~~~ 509 (617)
T 3rg2_A 436 QINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIA-----EFKLPDRV 509 (617)
T ss_dssp EEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHTTTCC-----GGGSCSEE
T ss_pred EEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCCCHHHHHHHHHhCCCc-----cccCCcEE
Confidence 9997 8999999999999999999999999986543 5788998863 57899999985488 99999999
Q ss_pred hHHH-HHHHHhhhhhhhhhccc
Q 005991 620 IFIA-LIHNLCQLYSSKELFRS 640 (666)
Q Consensus 620 ~~v~-~~~~~~gK~~r~~l~~~ 640 (666)
++++ +|++.+||++|++|++.
T Consensus 510 ~~v~~lP~t~~GKidR~~L~~~ 531 (617)
T 3rg2_A 510 ECVDSLPLTAVGKVDKKQLRQW 531 (617)
T ss_dssp EECSCCCBCTTSSBCHHHHHHH
T ss_pred EEecccCCCCCCCCcHHHHHHH
Confidence 9995 88999999999999876
No 21
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.8e-76 Score=651.65 Aligned_cols=472 Identities=18% Similarity=0.195 Sum_probs=404.0
Q ss_pred CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCHhHHHHHHH
Q 005991 79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPEWLIVDHA 157 (666)
Q Consensus 79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e~~~~~lA 157 (666)
.|+.++|+++++++||++|+.+. .+++||+||+++++++|++|.+. |.++|++|+++++|+++|++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~---------~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ---------GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC---------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 37899999999999999999753 25699999999999999999885 888999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehH
Q 005991 158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL 237 (666)
Q Consensus 158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (666)
|+++|++++|+++.++.+++.+++++++++++|++...... .. .......+++
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~---------------------~~~~~~~~~~ 124 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AV---------------------GQQIQTVSAE 124 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CC---------------------CCSSCEEEHH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------hc---------------------ccccceecHh
Confidence 99999999999999999999999999999999996542100 00 0112345666
Q ss_pred HHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHH
Q 005991 238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIV 317 (666)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~ 317 (666)
++...............++++++|+|||||||.||||++||+++.+.+.+....+++.++|++++++|++|.+++...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 204 (511)
T 3e7w_A 125 ELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP 204 (511)
T ss_dssp HHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHH
T ss_pred hhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHH
Confidence 66654433323333457899999999999999999999999999999988888889999999999999999999988889
Q ss_pred HHHhCcEEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005991 318 SVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP 393 (666)
Q Consensus 318 ~l~~G~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~ 393 (666)
++..|+++++.+ .++..+++.++++++|++.++|+++..++.....
T Consensus 205 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------ 254 (511)
T 3e7w_A 205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF------------------------------ 254 (511)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC------------------------------
T ss_pred HHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc------------------------------
Confidence 999999999987 4899999999999999999999999887642000
Q ss_pred ChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCC-----CCCCCCccC
Q 005991 394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG-----DNLSGHVGS 467 (666)
Q Consensus 394 ~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~ 467 (666)
.....+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++..... .....++|+
T Consensus 255 ------------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 322 (511)
T 3e7w_A 255 ------------SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGF 322 (511)
T ss_dssp ------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE
T ss_pred ------------ccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcc
Confidence 000114899999999999999999999988 89999999999998776644322 234567999
Q ss_pred CccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccC---CCCeeecccEEEEecCCcEEEEccC
Q 005991 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID---GDGWLHTGDIGLWLPGGRLKIIDRK 544 (666)
Q Consensus 468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~---~~gw~~TGDlg~~~~dG~l~i~GR~ 544 (666)
|+++++++|+| +++..++.|+ .|||+|+|++++.|||++|+.|++.|. +++||+|||+|++ +||+|+|+||+
T Consensus 323 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~ 397 (511)
T 3e7w_A 323 AKPDMNIFIMD-EEGQPLPEGE---KGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRL 397 (511)
T ss_dssp ECTTCEEEEEC-TTSCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEES
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---ceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccc
Confidence 99999999999 5677777665 899999999999999999999999982 2237999999999 59999999999
Q ss_pred CCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh----------hHHHHHHHHcCCCccccc
Q 005991 545 KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP----------DVLKDWAASQGIKVIYCF 611 (666)
Q Consensus 545 ~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----------~~l~~~~~~~~l~~~~~~ 611 (666)
||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++++ ++++++++++ |+
T Consensus 398 ~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~-L~----- 470 (511)
T 3e7w_A 398 DFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAAS-LP----- 470 (511)
T ss_dssp SSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHH-SC-----
T ss_pred cCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhh-Cc-----
Confidence 999998 8999999999999999999999999987643 58999999753 4688999998 88
Q ss_pred ccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991 612 SFRANSHVIFIA-LIHNLCQLYSSKELFRS 640 (666)
Q Consensus 612 ~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~ 640 (666)
.|++|+.+.+++ +|++.+||++|++|++.
T Consensus 471 ~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~ 500 (511)
T 3e7w_A 471 AYMIPRKFIYQDHIQMTANGKIDRKRIGEE 500 (511)
T ss_dssp GGGSCSEEEECSCCCBCTTSCBCHHHHHHH
T ss_pred hhhCCeeEEEeccCCCCCCcCccHHHHHhH
Confidence 999999999995 88888899999999886
No 22
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=8.5e-77 Score=656.15 Aligned_cols=470 Identities=19% Similarity=0.235 Sum_probs=397.7
Q ss_pred CCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005991 79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC 158 (666)
Q Consensus 79 ~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (666)
.|+.++|+++++++||++|+.+. + +++||+||+++++++|++|.++|+++||+|+++++|+++|++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 37899999999999999999764 2 45999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEe---
Q 005991 159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS--- 235 (666)
Q Consensus 159 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~--- 235 (666)
+++|+++||+++.++.+++.+++++++++++|++..... ..+. .....
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~---------~~~~--------------------~~~~~~~~ 122 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV---------TDLP--------------------VRIVSEDN 122 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS---------SCCS--------------------SEEEETHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc---------cccc--------------------cceechhh
Confidence 999999999999999999999999999999999753210 0000 11112
Q ss_pred hHHHHhc-CCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH
Q 005991 236 YLQLQSQ-GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314 (666)
Q Consensus 236 ~~~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~ 314 (666)
+.++... ......+.....++++++|+|||||||.||||++||+++.+.+.+....+++.++|++++++|++|.+++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 202 (512)
T 3fce_A 123 LKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMD 202 (512)
T ss_dssp HHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHH
T ss_pred hhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHH
Confidence 1222211 111122333467899999999999999999999999999999988888889999999999999999999988
Q ss_pred HHHHHHhCcEEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005991 315 QIVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG 390 (666)
Q Consensus 315 ~~~~l~~G~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~ 390 (666)
++.+++.|+++++.+ .++..+++.++++++|++.++|+++..++.....
T Consensus 203 ~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------- 255 (512)
T 3fce_A 203 IYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASF--------------------------- 255 (512)
T ss_dssp HHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTC---------------------------
T ss_pred HHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccc---------------------------
Confidence 889999999999987 4899999999999999999999999877542000
Q ss_pred CCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCCC-----CCCCC
Q 005991 391 QTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD-----NLSGH 464 (666)
Q Consensus 391 ~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~-----~~~~~ 464 (666)
.....+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++...... ....+
T Consensus 256 ---------------~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~ 320 (512)
T 3fce_A 256 ---------------SESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLP 320 (512)
T ss_dssp ---------------STTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCC
T ss_pred ---------------cchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCc
Confidence 000114899999999999999999999988 899999999999987766443322 35678
Q ss_pred ccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhcc---CCCCeeecccEEEEecCCcEEEE
Q 005991 465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI---DGDGWLHTGDIGLWLPGGRLKII 541 (666)
Q Consensus 465 vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i~ 541 (666)
+|+|.++++++|+| +++..++.++ .|||+|+||+++.|||++|+.|++.| +++|||+|||+|++ +||+|+|+
T Consensus 321 ~G~~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~ 395 (512)
T 3fce_A 321 VGYCKSDCRLLIMK-EDGTIAPDGE---KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYN 395 (512)
T ss_dssp CEEECTTCEEEEEC-SSSCBCCTTS---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEE
T ss_pred cccccCCcEEEEEC-CCCCCCCCCC---eEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEe
Confidence 99999999999999 6677776665 89999999999999999999999998 46789999999999 79999999
Q ss_pred ccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh----------hHHHHHHHHcCCCcc
Q 005991 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP----------DVLKDWAASQGIKVI 608 (666)
Q Consensus 542 GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----------~~l~~~~~~~~l~~~ 608 (666)
||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. +.++|+|++++ ++++++++++ |+
T Consensus 396 GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~-L~-- 471 (512)
T 3fce_A 396 GRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNER-LP-- 471 (512)
T ss_dssp EEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTT-SC--
T ss_pred cccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhh-Cc--
Confidence 999999998 8999999999999999999999999986544 57899999753 3688999988 88
Q ss_pred cccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991 609 YCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS 640 (666)
Q Consensus 609 ~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~ 640 (666)
.|++|+.+.+++ +|++.+||++|++|++.
T Consensus 472 ---~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~ 501 (512)
T 3fce_A 472 ---NYMIPRKFMYQSSIPMTPNGKVDRKKLLSE 501 (512)
T ss_dssp ---GGGSCSEEEECSCCCBCTTSSBCHHHHHHH
T ss_pred ---hhcCCeEEEEecccCCCCCcChHHHHHHhh
Confidence 999999999995 88888899999999877
No 23
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.1e-76 Score=700.64 Aligned_cols=499 Identities=25% Similarity=0.356 Sum_probs=342.5
Q ss_pred CCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005991 75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV 154 (666)
Q Consensus 75 ~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~ 154 (666)
.|...|++++|.++++++||++|+++. +. .+++||+||+++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus 57 ~p~~~tl~~~l~~~a~~~pd~~Al~~~---~~----~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~ 129 (979)
T 3tsy_A 57 IPNHLSLHDYIFQNISEFATKPCLING---PT----GHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLS 129 (979)
T ss_dssp CCTTSCHHHHHTTTGGGTTTSEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEEC---CC----CcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHH
Confidence 345689999999999999999999763 21 25699999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEE
Q 005991 155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234 (666)
Q Consensus 155 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (666)
+|||+++|+++||+++.++++++.+++++++++++|++....+.+....... .+ .++.++..... . ......
T Consensus 130 ~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~-~-----~~~~~~ 201 (979)
T 3tsy_A 130 FLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDDNESV-P-----IPEGCL 201 (979)
T ss_dssp HHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCCCTTS-C-----CCTTEE
T ss_pred HHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCCcccc-c-----CCcccc
Confidence 9999999999999999999999999999999999999987766555544332 22 34444432110 0 011235
Q ss_pred ehHHHHhcCCCC--CCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccc----ccccCCCcEEEEcCChHH
Q 005991 235 SYLQLQSQGCSS--PQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL----MVQFYPSDIYMSYLPLAH 308 (666)
Q Consensus 235 ~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h 308 (666)
+|.++....... ..+.....++|+++|+|||||||.||||++||+++++.+..... .+++.++|++++++|++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 281 (979)
T 3tsy_A 202 RFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFH 281 (979)
T ss_dssp EGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSS
T ss_pred cHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHH
Confidence 666655433221 12334567899999999999999999999999999988765433 356789999999999999
Q ss_pred HHHHHH-HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 005991 309 IYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQA 386 (666)
Q Consensus 309 ~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~ 386 (666)
.+++.. ++.++..|+++++.+ +++..+++.|+++++|++.++|+++..|.+.....
T Consensus 282 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------- 339 (979)
T 3tsy_A 282 IYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETE---------------------- 339 (979)
T ss_dssp HHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGG----------------------
T ss_pred HHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcccc----------------------
Confidence 999966 677899999999987 79999999999999999999999998886521100
Q ss_pred HHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccC-----CCCC
Q 005991 387 IVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAID-----KGDN 460 (666)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~-----~~~~ 460 (666)
....+++|.+++||+++++++.+++.+.+ +++++|.||+||++.+++... +...
T Consensus 340 --------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~ 399 (979)
T 3tsy_A 340 --------------------KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPV 399 (979)
T ss_dssp --------------------TSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCC
T ss_pred --------------------CCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCcccc
Confidence 00014899999999999999999999888 899999999999987654431 2234
Q ss_pred CCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEE
Q 005991 461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540 (666)
Q Consensus 461 ~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i 540 (666)
..+++|+|+++++++|+|+++++.++.++ .|||||+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|
T Consensus 400 ~~~~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~ 476 (979)
T 3tsy_A 400 KSGACGTVVRNAEMKIVDPDTGDSLSRNQ---PGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFI 476 (979)
T ss_dssp CTTCCCEECSSCEEEEECTTSCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred CCCCcCcccCCcEEEEEeCCCCCCCCCCC---ccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEE
Confidence 67899999999999999977777777765 899999999999999999999999999999999999999999999999
Q ss_pred EccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcC------hhHHHHHHHHcCCCccccc
Q 005991 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVD------PDVLKDWAASQGIKVIYCF 611 (666)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~l~~~~~~ 611 (666)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++. +++++++++++ |+
T Consensus 477 ~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~-l~----- 549 (979)
T 3tsy_A 477 VDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQ-VV----- 549 (979)
T ss_dssp EEESCC--------------------------------------------------------------------------
T ss_pred ecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCCCHHHHHHHHHHh-cc-----
Confidence 9999999998 8999999999999999999999999987653 5789999863 46789999988 88
Q ss_pred ccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991 612 SFRANSHVIFIA-LIHNLCQLYSSKELFRS 640 (666)
Q Consensus 612 ~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~ 640 (666)
.|++|+.+++++ +|++.+||++|++|++.
T Consensus 550 ~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~ 579 (979)
T 3tsy_A 550 FYKRINKVFFTESIPKAPSGKILRKDLRAK 579 (979)
T ss_dssp ------------------------------
T ss_pred cccCCeEEEEeCCcCcCCCCCeeHHHHHHH
Confidence 999999999995 88888899999999876
No 24
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=6.4e-77 Score=654.78 Aligned_cols=471 Identities=23% Similarity=0.306 Sum_probs=378.6
Q ss_pred CCCCCHHHHHHHHHHhCCC-CceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005991 76 PEIGTLHDNFIYAVENYPD-YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV 154 (666)
Q Consensus 76 ~~~~tl~~~~~~~a~~~pd-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~ 154 (666)
.++.|+.++|.++++++|+ ++|+.+. + +.+||+||.++++++|++|. .|++|+++++|+++|+++
T Consensus 19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~ 84 (505)
T 3nyq_A 19 SHMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA 84 (505)
T ss_dssp -----CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred cccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence 3567888999999999987 9999753 2 46999999999999998874 388999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEE
Q 005991 155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234 (666)
Q Consensus 155 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (666)
+|||+++|+++|||++.++.+++.+++++++++++|++.... .......+..+. ++..
T Consensus 85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~-~~~~---------------- 142 (505)
T 3nyq_A 85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE-----LPPALGALERVD-VDVR---------------- 142 (505)
T ss_dssp HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCC-----CCGGGTTSEEEE-CCTT----------------
T ss_pred HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccc-----cchhhccccccc-cccc----------------
Confidence 999999999999999999999999999999999999986421 001112222221 1110
Q ss_pred ehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHH
Q 005991 235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314 (666)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~ 314 (666)
.....+....+++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++..
T Consensus 143 ---------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~ 213 (505)
T 3nyq_A 143 ---------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVL 213 (505)
T ss_dssp ---------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTT
T ss_pred ---------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHH
Confidence 00112223457899999999999999999999999999999988888889999999999999999999875
Q ss_pred -HHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005991 315 -QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT 392 (666)
Q Consensus 315 -~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~ 392 (666)
++.++..|+++++.+ +++..+++.+ ++++|+++++|+++..+.+.+..... .
T Consensus 214 ~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~----~--------------------- 267 (505)
T 3nyq_A 214 GILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE----L--------------------- 267 (505)
T ss_dssp TTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH----H---------------------
T ss_pred HHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch----h---------------------
Confidence 778999999999887 7999999999 88999999999999988763211100 0
Q ss_pred CChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCc
Q 005991 393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPAC 472 (666)
Q Consensus 393 ~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ 472 (666)
.. ..+++|.+++||+++++++.+++.+.++++++|.||+||++..++.........+++|+|++++
T Consensus 268 -------------~~-~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ 333 (505)
T 3nyq_A 268 -------------AK-ALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGV 333 (505)
T ss_dssp -------------HH-HHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTC
T ss_pred -------------hc-ccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCC
Confidence 00 0037899999999999999999999899999999999999887766655566778999999999
Q ss_pred EEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccC-CCeEEcC
Q 005991 473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK-KNIFKLA 551 (666)
Q Consensus 473 ~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~-~d~ikl~ 551 (666)
+++|+| +++..++...+++.|||+|+|++++.|||++|+.|+++|..+|||+|||+|++++||+|+|+||+ ||+||+
T Consensus 334 ~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~- 411 (505)
T 3nyq_A 334 ELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKS- 411 (505)
T ss_dssp EEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEE-
T ss_pred EEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEe-
Confidence 999999 55565555333458999999999999999999999999988999999999999999999999998 599997
Q ss_pred CeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh-------hHHHHHHHHcCCCcccccccccCcchhH
Q 005991 552 QGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP-------DVLKDWAASQGIKVIYCFSFRANSHVIF 621 (666)
Q Consensus 552 ~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-------~~l~~~~~~~~l~~~~~~~~~~p~~i~~ 621 (666)
+|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.+ ++++++++++ |+ .|++|+.|.+
T Consensus 412 ~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~-L~-----~~~~P~~i~~ 485 (505)
T 3nyq_A 412 GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAAR-LA-----PHKRPRVVRY 485 (505)
T ss_dssp TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHH-TC-----GGGSCSEEEE
T ss_pred CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhh-CC-----CCcCccEEEE
Confidence 8999999999999999999999999987653 58999999743 6899999999 98 9999999999
Q ss_pred HH-HHHHHhhhhhhhhhcc
Q 005991 622 IA-LIHNLCQLYSSKELFR 639 (666)
Q Consensus 622 v~-~~~~~~gK~~r~~l~~ 639 (666)
++ +|++.+||++|++|+|
T Consensus 486 v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 486 LDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp CSCCCC-------------
T ss_pred ECCCCCCCCcCeeHHhhcc
Confidence 95 8888899999999987
No 25
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.1e-75 Score=711.61 Aligned_cols=521 Identities=19% Similarity=0.245 Sum_probs=433.0
Q ss_pred hHHHhhHHHHhhccccCCcCCCccccCCCCccccccCCCceEEcCCCCCCCcCccccCCCCCCcccccCCCCCCCCCHHH
Q 005991 4 SSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLHD 83 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~ 83 (666)
..++++|.++|++++++|+.+++++++..+.... .+...+... ..+. ...++++
T Consensus 415 ~~l~~~~~~lL~~l~~~p~~~~~~~~~l~~~e~~-------------------~~~~~~~~~------~~~~-~~~~l~~ 468 (1304)
T 2vsq_A 415 LRLKSQLLTAIQQLIQNPDQPVSTINLVDDRERE-------------------FLLTGLNPP------AQAH-ETKPLTY 468 (1304)
T ss_dssp HHHHHHHHHHHHHHHHSTTSBGGGCCCCCHHHHH-------------------HHHTTTSCC------CCCC-CCCCHHH
T ss_pred HHHHHHHHHHHHHhccCccccccccCCCCHHHHH-------------------HHHHhcCCC------CCCC-CCCCHHH
Confidence 4678999999999999999999999987654210 000111100 0111 2378999
Q ss_pred HHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 005991 84 NFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSY 163 (666)
Q Consensus 84 ~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~ 163 (666)
+|+++++++||++|+.+. + +.+||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|+
T Consensus 469 ~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~ 539 (1304)
T 2vsq_A 469 WFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGA 539 (1304)
T ss_dssp HHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCC
Confidence 999999999999999753 2 3599999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehHHHHhcC
Q 005991 164 ISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQG 243 (666)
Q Consensus 164 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
++|||+|.++.+++.++++++++++++++......+ ..++.....+.+++.. .. ..
T Consensus 540 ~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~----~~~~~~~~~~~~~~~~------------------~~-~~- 595 (1304)
T 2vsq_A 540 AYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQA----AELPYTGTTLFIDDQT------------------RF-EE- 595 (1304)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTS----TTCCCCSEEEESSCGG------------------GG-GS-
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhh----hccCCCCcEEEecccc------------------cc-cc-
Confidence 999999999999999999999999999987643321 1223223333332210 00 00
Q ss_pred CCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHhCc
Q 005991 244 CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGV 323 (666)
Q Consensus 244 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~ 323 (666)
....+.....++++|||+|||||||.||||+++|+++.+. .+....++++++|+++++.|++|+.+...++.+++.|+
T Consensus 596 -~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~ 673 (1304)
T 2vsq_A 596 -QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAA 673 (1304)
T ss_dssp -CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTC
T ss_pred -ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCC
Confidence 1112233457899999999999999999999999999876 44556678899999999999999999888999999999
Q ss_pred EEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhH
Q 005991 324 AVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDR 399 (666)
Q Consensus 324 ~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~ 399 (666)
++++.+ .++..+.+.|+++++|++.++|+++..+.+.....
T Consensus 674 ~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~----------------------------------- 718 (1304)
T 2vsq_A 674 RLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDW----------------------------------- 718 (1304)
T ss_dssp EEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH-----------------------------------
T ss_pred EEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhc-----------------------------------
Confidence 999987 58999999999999999999999999886520000
Q ss_pred HhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCC----CCCCCCccCCccCcEE
Q 005991 400 LVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG----DNLSGHVGSPNPACEI 474 (666)
Q Consensus 400 ~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~p~~~~~v 474 (666)
+ +++|.+++||+++++++.+.|.+.+ +++++|+||+||++++++..... .....++|+|++|+++
T Consensus 719 --~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~ 788 (1304)
T 2vsq_A 719 --M--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASV 788 (1304)
T ss_dssp --H--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEE
T ss_pred --C--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEE
Confidence 0 2799999999999999999888777 47899999999999877654332 2345689999999999
Q ss_pred EEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccC------CCCeeecccEEEEecCCcEEEEccCCCeE
Q 005991 475 KLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID------GDGWLHTGDIGLWLPGGRLKIIDRKKNIF 548 (666)
Q Consensus 475 ~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~------~~gw~~TGDlg~~~~dG~l~i~GR~~d~i 548 (666)
+|+| ++++.++.|. .|||||+|+++++||+|+|+.|+++|. +++||||||+|++++||.|+|+||+||+|
T Consensus 789 ~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qv 864 (1304)
T 2vsq_A 789 YILN-EQSQLQPFGA---VGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQV 864 (1304)
T ss_dssp EEEC-TTSCBCCTTC---CEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEE
T ss_pred EEEC-CCcCCCCCCC---ceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEE
Confidence 9999 6667777665 899999999999999999999999993 35699999999999999999999999999
Q ss_pred EcCCeeeeccHHHHHHHhcCcCcceEEEEEeCC---CCeEEEEEEc----ChhHHHHHHHHcCCCcccccccccCcchhH
Q 005991 549 KLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAV----DPDVLKDWAASQGIKVIYCFSFRANSHVIF 621 (666)
Q Consensus 549 kl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~----~~~~l~~~~~~~~l~~~~~~~~~~p~~i~~ 621 (666)
|+ +|+||+|.|||++|.+||+|.+|+|++.++ .+.++|+|++ +.++++++++++ |+ .|++|..+++
T Consensus 865 ki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~~~~~l~~~l~~~-Lp-----~ymvP~~~~~ 937 (1304)
T 2vsq_A 865 KI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAEDVKAHLKKQ-LP-----AYMVPQTFTF 937 (1304)
T ss_dssp EE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSSCHHHHHHHHHHH-SC-----GGGSCSEEEE
T ss_pred EE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCCCHHHHHHHHHHh-Ch-----HhhhccEEEE
Confidence 98 899999999999999999999999998764 3689999996 357899999999 98 9999999999
Q ss_pred HH-HHHHHhhhhhhhhhccch
Q 005991 622 IA-LIHNLCQLYSSKELFRSR 641 (666)
Q Consensus 622 v~-~~~~~~gK~~r~~l~~~~ 641 (666)
++ +|.+.+||++|++|.+..
T Consensus 938 l~~lP~t~~GKidR~~L~~~~ 958 (1304)
T 2vsq_A 938 LDELPLTTNGKVNKRLLPKPD 958 (1304)
T ss_dssp ESCCCCCSSCSSCCSCCCCCC
T ss_pred ecccCCCCCcccCHhhcCCcc
Confidence 95 888989999999998763
No 26
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=3.2e-76 Score=653.25 Aligned_cols=473 Identities=20% Similarity=0.209 Sum_probs=392.1
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005991 78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA 157 (666)
Q Consensus 78 ~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (666)
+.|+.++|++.++++||++|+.+. + +++||+||+++++++|++|.+.|+++||+|+++++|+++|++++||
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL---G------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 468999999999999999999753 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEEehH
Q 005991 158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL 237 (666)
Q Consensus 158 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (666)
|+++|+++||+++.++.+++.+++++++++++|++.+.... + .+.....+.
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~-------~----------------------~~~~~~~~~ 124 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLT-------I----------------------EGISLVSLS 124 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSC-------C----------------------TTSEEEEHH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccc-------c----------------------ccCcccchh
Confidence 99999999999999999999999999999999998653211 0 112233444
Q ss_pred HHHhcC--CCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc--cccCCCcEEEEcCChHHHHHHH
Q 005991 238 QLQSQG--CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM--VQFYPSDIYMSYLPLAHIYERA 313 (666)
Q Consensus 238 ~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~~pl~h~~~~~ 313 (666)
++.... ...........++|+++|+|||||||.||||++||+++.+.+.+.... +++.+++++++.+|++|.+++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 204 (521)
T 3l8c_A 125 EIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM 204 (521)
T ss_dssp HHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH
T ss_pred hhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH
Confidence 332211 111122334678999999999999999999999999999887766554 6778899999999999999988
Q ss_pred HHHHHHHhCcEEEEec----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005991 314 NQIVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS 389 (666)
Q Consensus 314 ~~~~~l~~G~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~ 389 (666)
..+.++..|+++++.+ .++..+++.+.++++|++.++|+++..+......
T Consensus 205 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------- 258 (521)
T 3l8c_A 205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF-------------------------- 258 (521)
T ss_dssp HHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTC--------------------------
T ss_pred HHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc--------------------------
Confidence 8888999999999887 3899999999999999999999999876541000
Q ss_pred CCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh-CCccccCcccchhhhhhhccCCCC-----CCCC
Q 005991 390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD-----NLSG 463 (666)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~-----~~~~ 463 (666)
. ....+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++...... ...+
T Consensus 259 --~--------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 322 (521)
T 3l8c_A 259 --C--------------QAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRL 322 (521)
T ss_dssp --S--------------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSC
T ss_pred --c--------------cccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCcc
Confidence 0 00014899999999999999999998887 899999999999987665443221 3557
Q ss_pred CccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhcc---CCCCeeecccEEEEecCCcEEE
Q 005991 464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI---DGDGWLHTGDIGLWLPGGRLKI 540 (666)
Q Consensus 464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i 540 (666)
++|+|+++++++|+| +++..++.++ .|||+|+||+++.|||++|+.|++.| +++|||+|||+|++|+||+|+|
T Consensus 323 ~vG~p~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~ 398 (521)
T 3l8c_A 323 PIGYPKPDSPTYIID-EDGKELSSGE---QGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLY 398 (521)
T ss_dssp EEEEECTTSCEEEEC-TTSCBCCTTC---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEE
T ss_pred ccccccCCCEEEEEC-CCcCCCCCCC---ceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEE
Confidence 899999999999999 6667676665 89999999999999999999999998 6788999999999999999999
Q ss_pred EccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC----CeEEEEEEcCh-------------hHHHHHHHHc
Q 005991 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN----SCLVAIVAVDP-------------DVLKDWAASQ 603 (666)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~----~~~va~vv~~~-------------~~l~~~~~~~ 603 (666)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. +.++|+|++++ ++++++++++
T Consensus 399 ~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~ 477 (521)
T 3l8c_A 399 GGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDH 477 (521)
T ss_dssp EEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGG
T ss_pred eCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhh
Confidence 9999999997 8999999999999999999999999986532 56889998753 4677888888
Q ss_pred CCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccch
Q 005991 604 GIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRSR 641 (666)
Q Consensus 604 ~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~~ 641 (666)
|+ .|++|+.|.+++ +|++.+||++|++|++.-
T Consensus 478 -l~-----~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~ 510 (521)
T 3l8c_A 478 -MM-----SYMMPSKFLYRDSLPLTPNGKIDIKTLINEV 510 (521)
T ss_dssp -SC-----GGGSCSEEEECSSCCBCTTSSBCHHHHHHHT
T ss_pred -Cc-----cccCCeEEEEecccCCCCCcCccHHHHhhhh
Confidence 87 999999999995 888889999999998873
No 27
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=4.9e-76 Score=648.56 Aligned_cols=481 Identities=19% Similarity=0.240 Sum_probs=376.1
Q ss_pred CHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 005991 80 TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACS 159 (666)
Q Consensus 80 tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (666)
||.++|.++++++||++|+.+. + +++||+||+++++++|++|.+. +||+|+|+++|+++|++++|||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 5678899999999999999753 2 4699999999999999999987 89999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEE-ehHH
Q 005991 160 AYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI-SYLQ 238 (666)
Q Consensus 160 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~ 238 (666)
++|++++|+++.++.+++.+++++++++++|++........... ....+..+........... ........ ..+.
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 145 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIV-SLDDIEFAGRDITTNGLLD---NTMGIQYDTSNET 145 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEE-ETTC-------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccc-ccccceeeeeecccccccc---cccccccccchhh
Confidence 99999999999999999999999999999999876533221111 0111111111000000000 00000000 0011
Q ss_pred HHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHH
Q 005991 239 LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVS 318 (666)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~ 318 (666)
...............+++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 225 (501)
T 3ipl_A 146 VVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRA 225 (501)
T ss_dssp ----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHH
T ss_pred ccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHH
Confidence 11101000112234578999999999999999999999999999999888888899999999999999999999988899
Q ss_pred HHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhh
Q 005991 319 VYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW 397 (666)
Q Consensus 319 l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~ 397 (666)
++.|+++++.+ +++..+++.++++++|++.++|+++..|.+....
T Consensus 226 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------- 271 (501)
T 3ipl_A 226 VIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------------- 271 (501)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------------
T ss_pred HHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------------
Confidence 99999999987 7999999999999999999999999988663100
Q ss_pred hHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCC--CCCCCCccCCccCcEEE
Q 005991 398 DRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG--DNLSGHVGSPNPACEIK 475 (666)
Q Consensus 398 d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~ 475 (666)
...++|.+++||+++++++.+.+.+ +++++++.||+||+++.++..... ....+++|+|+++++++
T Consensus 272 -----------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 339 (501)
T 3ipl_A 272 -----------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVK 339 (501)
T ss_dssp -----------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEE
T ss_pred -----------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEE
Confidence 0027999999999999999999987 699999999999998755443332 24668899999999999
Q ss_pred EEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeee
Q 005991 476 LVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY 555 (666)
Q Consensus 476 ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~ 555 (666)
|+|.+ .+ +.|||+|+|+++++|||++|+.|.+ | .+|||+|||+|++|+||+|+|+||+||+||+ +|++
T Consensus 340 i~d~~------~~---~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~ 407 (501)
T 3ipl_A 340 IKNPN------KE---GHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIIS-GGEN 407 (501)
T ss_dssp EESCC------SS---CCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEEC-SSCE
T ss_pred EecCC------CC---CccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEE-CCEE
Confidence 99943 22 3799999999999999999999988 6 6899999999999999999999999999996 8999
Q ss_pred eccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEc----ChhHHHHHHHHcCCCcccccccccCcchhHHH-HHHH
Q 005991 556 VAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAV----DPDVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHN 627 (666)
Q Consensus 556 v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~ 627 (666)
|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++ +.++++++++++ |+ .|++|+.|.+++ +|++
T Consensus 408 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~l~~~l~~~-L~-----~~~~P~~i~~v~~lP~t 481 (501)
T 3ipl_A 408 IYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYLSKH-LA-----KYKVPKHFEKVDTLPYT 481 (501)
T ss_dssp ECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHHH-SC-----GGGSCSEEEECSSCC--
T ss_pred ECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCCCHHHHHHHHHhh-Cc-----cccCCCEEEEecccCCC
Confidence 999999999999999999999987654 467888886 457999999999 98 999999999995 8899
Q ss_pred Hhhhhhhhhhccc
Q 005991 628 LCQLYSSKELFRS 640 (666)
Q Consensus 628 ~~gK~~r~~l~~~ 640 (666)
.+||++|++|++.
T Consensus 482 ~~GKi~R~~l~~~ 494 (501)
T 3ipl_A 482 STGKLQRNKLYRE 494 (501)
T ss_dssp -------------
T ss_pred CCCCEeHHHHhhc
Confidence 9999999999987
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.1e-73 Score=638.50 Aligned_cols=485 Identities=16% Similarity=0.166 Sum_probs=315.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCceEEEEEe-ccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005991 76 PEIGTLHDNFIYAVENYPDYKYLGTRVR-VDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV 154 (666)
Q Consensus 76 ~~~~tl~~~~~~~a~~~pd~~al~~~~~-~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~ 154 (666)
.+..|+.++|+++++++||++|+.+... .+......+++||+||+++++++|++|.+.|+ +||+|+++++|+++|+++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~ 95 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAI 95 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHH
Confidence 3457899999999999999999987611 01111234789999999999999999999999 799999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCCCCCcEEE
Q 005991 155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234 (666)
Q Consensus 155 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (666)
+|||+++|+++||+++.++.+++.+++++++++++|++......+ ..+....++..+. .
T Consensus 96 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~----------------~ 154 (562)
T 3ite_A 96 IVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTKN----------------Q 154 (562)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETTC----------------H
T ss_pred HHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecccc----------------h
Confidence 999999999999999999999999999999999999986543211 1111112221110 1
Q ss_pred ehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc--------cccCCCcEEEEcCCh
Q 005991 235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM--------VQFYPSDIYMSYLPL 306 (666)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--------~~~~~~d~~l~~~pl 306 (666)
.+.+....... ........++++++|+|||||||.||||++||+++.+.+..+... ..+...+++++..|+
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (562)
T 3ite_A 155 SFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASR 233 (562)
T ss_dssp HHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCT
T ss_pred hhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCc
Confidence 22222222211 122234567889999999999999999999999998877654332 457788999999999
Q ss_pred HHHHHHHHHHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005991 307 AHIYERANQIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK 384 (666)
Q Consensus 307 ~h~~~~~~~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~ 384 (666)
+|..++...+.++..|+++++.+ ..+..+.+.++++++|++.++|+++..+...
T Consensus 234 ~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~------------------------ 289 (562)
T 3ite_A 234 AFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV------------------------ 289 (562)
T ss_dssp TSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC------------------------
T ss_pred hhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC------------------------
Confidence 99999888889999999999876 3457788999999999999999987654210
Q ss_pred HHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCC-CCCCCC
Q 005991 385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDK-GDNLSG 463 (666)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~ 463 (666)
+ ...+++|.+++||+++++++.++|++.+++++++.||+||++..++.... .....+
T Consensus 290 --------~--------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 347 (562)
T 3ite_A 290 --------P--------------EDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTR 347 (562)
T ss_dssp --------G--------------GGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTT
T ss_pred --------c--------------cccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCc
Confidence 0 00148999999999999999999998889999999999999876665443 235567
Q ss_pred CccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCC--eeecccEEEEecCCcEEEE
Q 005991 464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDG--WLHTGDIGLWLPGGRLKII 541 (666)
Q Consensus 464 ~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g--w~~TGDlg~~~~dG~l~i~ 541 (666)
++|+|+++++++|+|.+++..++.|+ .|||||+|++++.|||++|+.|+..+ .+| ||+|||+|++|+||+|+|+
T Consensus 348 ~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l~~~ 423 (562)
T 3ite_A 348 CIGHPLGDSVAHVLAPGSNEHVKKGM---AGELVIEGSLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSILFL 423 (562)
T ss_dssp EEEEECTTCEEEEECTTSSCBCCTTS---CEEEEEESTTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCEEEE
T ss_pred cccccCCCCeEEEEeCCCCCCCCCCC---ceEEEEeccccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeEEEE
Confidence 89999999999999976666676665 89999999999999999999998776 344 9999999999999999999
Q ss_pred ccCCCeEEcCCeeeeccHHHHHHHhcC-cCcceEEEEEeCCC---C-eEEEEEEcCh------------------hHHHH
Q 005991 542 DRKKNIFKLAQGEYVAPEKIENVYAKC-KFVLQCFIYGDSFN---S-CLVAIVAVDP------------------DVLKD 598 (666)
Q Consensus 542 GR~~d~ikl~~G~~v~p~eIE~~l~~~-p~V~~~~V~g~~~~---~-~~va~vv~~~------------------~~l~~ 598 (666)
||+||+||+ +|+||+|.|||++|.+| |.|.+++|++.+++ + .+++++.... +++++
T Consensus 424 GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~ 502 (562)
T 3ite_A 424 GRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQ 502 (562)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred ccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHH
Confidence 999999997 89999999999999988 88888888876543 2 3445554321 37889
Q ss_pred HHHHcCCCcccccccccCcchhHHH-HHHH-Hhhhhhhhhhccc
Q 005991 599 WAASQGIKVIYCFSFRANSHVIFIA-LIHN-LCQLYSSKELFRS 640 (666)
Q Consensus 599 ~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~-~~gK~~r~~l~~~ 640 (666)
+|+++ |+ .|++|+.|.+++ +|++ .+||++|++|++.
T Consensus 503 ~~~~~-L~-----~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~ 540 (562)
T 3ite_A 503 ACEQT-LP-----AYMVPDFIIPISFIPLRDTSAKTDAKALEHM 540 (562)
T ss_dssp --------------------------------------------
T ss_pred HHHhh-CC-----cccCCcEEEEeccCCCCCCCCcchHHHHHHH
Confidence 99988 88 999999999996 6657 7799999999987
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.6e-73 Score=640.01 Aligned_cols=488 Identities=21% Similarity=0.251 Sum_probs=395.0
Q ss_pred CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991 77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH 156 (666)
Q Consensus 77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (666)
...|+.++|.++++++||++|+.+. ++ +..+++||+||.++++++|++|+++|+++||+|+++++|+++|++++|
T Consensus 9 ~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 83 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFL 83 (590)
T ss_dssp TCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHH
Confidence 4679999999999999999999876 32 234679999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCC---CHHHHHHHHHhcCceEEEEccccHHHHHHhh-hcCCCceEEEEeCCCCCCCCCCCCCCCcE
Q 005991 157 ACSAYSYISVPLYDTL---GPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI-SEIPSVHLIVVVGGKDEHLPSLPSTSGVK 232 (666)
Q Consensus 157 A~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (666)
||+++|+++||+++.+ +.+++.++++++++++++++......+.... ...+.+..+ .
T Consensus 84 A~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-------------------~ 144 (590)
T 3kxw_A 84 GCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKI-------------------P 144 (590)
T ss_dssp HHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTE-------------------E
T ss_pred HHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccc-------------------c
Confidence 9999999999999988 4578999999999999999987655543221 112211111 1
Q ss_pred EEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHH
Q 005991 233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER 312 (666)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 312 (666)
....+.+.... ..........++|+++|+|||||||.||||++||+++++.+.+....+++.++|++++++|++|++++
T Consensus 145 ~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~ 223 (590)
T 3kxw_A 145 AIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGL 223 (590)
T ss_dssp EEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH
T ss_pred eeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhh
Confidence 12222221111 11122335678999999999999999999999999999999988888999999999999999999999
Q ss_pred HH-HHHHHHhCcEEEEec-C----CHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 005991 313 AN-QIVSVYYGVAVGFYQ-G----DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQA 386 (666)
Q Consensus 313 ~~-~~~~l~~G~~~~~~~-~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~ 386 (666)
.. ++.+++.|+++++.+ + ++..+++.|+++++|++.++|.++..+.+.+......
T Consensus 224 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~------------------- 284 (590)
T 3kxw_A 224 IGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKE------------------- 284 (590)
T ss_dssp HTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGT-------------------
T ss_pred HHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhcc-------------------
Confidence 87 778999999999987 2 8999999999999999999999998887632111000
Q ss_pred HHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC------CccccCcccchhhhhhhccCCC--
Q 005991 387 IVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG------CQVMEGYGMTETSCIISAIDKG-- 458 (666)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v~~~YG~TE~~~~~~~~~~~-- 458 (666)
....+++|.+++||+++++++.+.|.+.++ +++++.||+||++++++.....
T Consensus 285 --------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~ 344 (590)
T 3kxw_A 285 --------------------GLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSS 344 (590)
T ss_dssp --------------------TCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSC
T ss_pred --------------------CCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCC
Confidence 001158999999999999999999998873 4799999999999876654321
Q ss_pred -------------------------CCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhh
Q 005991 459 -------------------------DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQ 513 (666)
Q Consensus 459 -------------------------~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~ 513 (666)
....+++|+|+++ ++|+|.+++..++.++ .|||||+||+++.|||++|+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~ 419 (590)
T 3kxw_A 345 YKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQ---VGEIWVQSNSVAKGYWNQPEE 419 (590)
T ss_dssp CCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTB---CEEEEEESTTSCCCBTTCHHH
T ss_pred ceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCC---EEEEEEeCCcccccccCChhH
Confidence 1234678999998 8889966677776665 899999999999999999999
Q ss_pred hhhccCC------CC--eeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHH-hcCcCcc--eEEEEEeCC-
Q 005991 514 TREVIDG------DG--WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVY-AKCKFVL--QCFIYGDSF- 581 (666)
Q Consensus 514 t~~~~~~------~g--w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l-~~~p~V~--~~~V~g~~~- 581 (666)
|+++|.. +| ||+|||+|++| ||.|+|+||+||+||+ +|+||+|.|||++| ..+|.|. +|+|++.++
T Consensus 420 t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~ 497 (590)
T 3kxw_A 420 TRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEE 497 (590)
T ss_dssp HHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEET
T ss_pred HHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEEEEEecCC
Confidence 9999943 24 99999999999 9999999999999998 89999999999999 8999998 788887554
Q ss_pred -CCeEEEEEEcC--------hhHHHHHHHHcCCCcccccccccCc-chhHH---HHHHHHhhhhhhhhhccc
Q 005991 582 -NSCLVAIVAVD--------PDVLKDWAASQGIKVIYCFSFRANS-HVIFI---ALIHNLCQLYSSKELFRS 640 (666)
Q Consensus 582 -~~~~va~vv~~--------~~~l~~~~~~~~l~~~~~~~~~~p~-~i~~v---~~~~~~~gK~~r~~l~~~ 640 (666)
.+.+++++++. .+++.++++++ ++ ..+++|. .+.++ ++|++.+||++|++|++.
T Consensus 498 ~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~-l~----~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~ 564 (590)
T 3kxw_A 498 HEYKLTVMCEVKNRFMDDVAQDNLFNEIFEL-VY----ENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKH 564 (590)
T ss_dssp TEEEEEEEEEESCTTCCHHHHHHHHHHHHHH-HH----HHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHH
T ss_pred CCceEEEEEEeccccccchhHHHHHHHHHHH-HH----HHcCCceeEEEEECCCccCcCCCcHHHHHHHHHH
Confidence 35777887753 25677888887 64 1377775 55565 489999999999999876
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=6.1e-72 Score=627.35 Aligned_cols=486 Identities=21% Similarity=0.317 Sum_probs=397.5
Q ss_pred CCCCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005991 75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV 154 (666)
Q Consensus 75 ~~~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~ 154 (666)
.+...|+.++|+++++++|+.+++. ...+..+++||+||+++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus 17 ~~~~~tl~~~l~~~a~~~p~~~~~~------~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 90 (576)
T 3gqw_A 17 YADFPTLVDALDYAALSSAGMNFYD------RRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEA 90 (576)
T ss_dssp CSCCSSHHHHHHHHTTSSCEEEEEC------TTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHH
T ss_pred cCCCCcHHHHHHHHhhCCCCeEEeC------CCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHH
Confidence 4567899999999999999988773 2223347799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCC-------HHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCCCCCCCCCCCC
Q 005991 155 DHACSAYSYISVPLYDTLG-------PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPS 227 (666)
Q Consensus 155 ~lA~~~~G~~~vpl~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~ 227 (666)
+|||+++|+++||+++.++ .+++.+++++++++++|++.+....+.......+.+..+
T Consensus 91 ~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~--------------- 155 (576)
T 3gqw_A 91 FFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVL--------------- 155 (576)
T ss_dssp HHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEE---------------
T ss_pred HHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceec---------------
Confidence 9999999999999999999 899999999999999999998877776665554433221
Q ss_pred CCCcEEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc-cccCCCcEEEEcCCh
Q 005991 228 TSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM-VQFYPSDIYMSYLPL 306 (666)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~d~~l~~~pl 306 (666)
......... ..........++++++|+|||||||.||||++||+++++.+...... +++.++|++++++|+
T Consensus 156 -------~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 227 (576)
T 3gqw_A 156 -------SHAWFKALP-EADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPF 227 (576)
T ss_dssp -------EHHHHHTSC-CCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCT
T ss_pred -------chhhhhccc-ccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCc
Confidence 111111111 11223334578999999999999999999999999999888776544 788999999999999
Q ss_pred HHHHHHHH-HHHHHHhCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 005991 307 AHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAY 380 (666)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 380 (666)
+|++++.. .+.++..|+++++.+ .++..+++.++++++|++.++|+++..+.+.....
T Consensus 228 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~---------------- 291 (576)
T 3gqw_A 228 YHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEK---------------- 291 (576)
T ss_dssp TSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHH----------------
T ss_pred cccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhccc----------------
Confidence 99999977 556788999998876 48899999999999999999999998775421111
Q ss_pred HHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHh------CCccccCcccchhhhhhhc
Q 005991 381 NSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF------GCQVMEGYGMTETSCIISA 454 (666)
Q Consensus 381 ~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~------~~~v~~~YG~TE~~~~~~~ 454 (666)
.......+++|.+++||+++++++.++|.+.+ ++.+++.||+||++.+++.
T Consensus 292 -----------------------~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 348 (576)
T 3gqw_A 292 -----------------------DLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSF 348 (576)
T ss_dssp -----------------------HHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEE
T ss_pred -----------------------ccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeec
Confidence 00001125899999999999999999999887 6889999999999887665
Q ss_pred cCCCCC----------------------------CCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCcc
Q 005991 455 IDKGDN----------------------------LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQG 506 (666)
Q Consensus 455 ~~~~~~----------------------------~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~G 506 (666)
...... ...++|+|+++++++|+| +++..++.++ .|||+|+|+++++|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~~~~g 424 (576)
T 3gqw_A 349 SDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAERV---VGHICISGPSLMSG 424 (576)
T ss_dssp CCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTTB---CEEEEEESTTSCCC
T ss_pred ccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCCC---eEEEEEeCcccccc
Confidence 432210 112799999999999999 6777777665 89999999999999
Q ss_pred ccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC-CeE
Q 005991 507 YYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN-SCL 585 (666)
Q Consensus 507 Y~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~-~~~ 585 (666)
||++|+.|++.+ .+|||+|||+|++ +||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+++|++.... +.+
T Consensus 425 Y~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~ 501 (576)
T 3gqw_A 425 YFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKI 501 (576)
T ss_dssp BTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSSCCTTSEEEEECTTSCE
T ss_pred ccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCcccccccEEEEEcCCccE
Confidence 999999998877 7999999999999 79999999999999998 8999999999999999999998777764332 344
Q ss_pred EEEEEc--Ch----hHHHHHHHHcCCCcccccccccCcchhHHH---HHHHHhhhhhhhhhccc
Q 005991 586 VAIVAV--DP----DVLKDWAASQGIKVIYCFSFRANSHVIFIA---LIHNLCQLYSSKELFRS 640 (666)
Q Consensus 586 va~vv~--~~----~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~---~~~~~~gK~~r~~l~~~ 640 (666)
+++++. .. +++.++++++ +. ..+++|..+.+++ +|++.+||++|++|++.
T Consensus 502 ~~~~~~~~~~~~~~~~l~~~l~~~-l~----~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~ 560 (576)
T 3gqw_A 502 ILQIQCRISDEERRGQLIHALAAR-IQ----SEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKR 560 (576)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHH-HH----HHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHH
T ss_pred EEEEEEecCchhHHHHHHHHHHHH-HH----HHhCCceeEEEECCCCcCcCCCccchHHHHHHH
Confidence 444443 22 4566777776 51 2789999888874 88999999999999987
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.1e-62 Score=537.34 Aligned_cols=400 Identities=19% Similarity=0.206 Sum_probs=317.4
Q ss_pred CCCCHHHHHHHHHHhCCCCceEEEEEeccCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005991 77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH 156 (666)
Q Consensus 77 ~~~tl~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (666)
...|+.++|.++++++||++|+++....++..+..+++||+||.++++++|++|+++|+ +||+|+|+++|+++|++++|
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 35799999999999999999998862111223345789999999999999999999996 99999999999999999999
Q ss_pred HHHhcCCeEEecCC---CCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCc--eEEEEeCCCCCCCCCCCCCCCc
Q 005991 157 ACSAYSYISVPLYD---TLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSV--HLIVVVGGKDEHLPSLPSTSGV 231 (666)
Q Consensus 157 A~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l--~~ii~~~~~~~~~~~~~~~~~~ 231 (666)
||+++|+++|||++ .++.+++.+++++++++++|++......+.+.....+.. ..++.++...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 788999999999999999999998877776654433321 1233322211
Q ss_pred EEEehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCC------CcEEEEcCC
Q 005991 232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYP------SDIYMSYLP 305 (666)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~------~d~~l~~~p 305 (666)
.. .....+.....++++++|+|||||||.||||++||+++.+.+.+....+.+.. +|++++++|
T Consensus 169 ---------~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 238 (480)
T 3t5a_A 169 ---------LD-APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLP 238 (480)
T ss_dssp ---------TT-CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCC
T ss_pred ---------cc-cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCC
Confidence 10 01112233457899999999999999999999999999998887777777766 999999999
Q ss_pred hHHHHHHHH-HHHHHHhCcEEEEec-----CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 005991 306 LAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAA 379 (666)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 379 (666)
++|++++.. ++.+++.|+++++.+ .++..+++.++++++| +..+|+++..++.......
T Consensus 239 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~-------------- 303 (480)
T 3t5a_A 239 FYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDD-------------- 303 (480)
T ss_dssp TTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTG--------------
T ss_pred CcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcc--------------
Confidence 999999765 678999999999986 3899999999999999 8899999887765311000
Q ss_pred HHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhC------CccccCcccchhhhhhh
Q 005991 380 YNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG------CQVMEGYGMTETSCIIS 453 (666)
Q Consensus 380 ~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v~~~YG~TE~~~~~~ 453 (666)
.......++||.+++||+++++++.++|.+.++ +.+++.||+||++.+++
T Consensus 304 ------------------------~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 359 (480)
T 3t5a_A 304 ------------------------DMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVA 359 (480)
T ss_dssp ------------------------GGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEE
T ss_pred ------------------------cccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEe
Confidence 000001158999999999999999999998874 47999999999998776
Q ss_pred ccCCCC-------------------------CCCCCccCCccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCcccc
Q 005991 454 AIDKGD-------------------------NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYY 508 (666)
Q Consensus 454 ~~~~~~-------------------------~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~ 508 (666)
...... ...+++|+|++ ++++|+|.+++..++.|+ .|||||+|++++.|||
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~---~GEl~v~g~~v~~GY~ 435 (480)
T 3t5a_A 360 TSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGT---VGEIWVHGDNVANGYW 435 (480)
T ss_dssp ECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTB---CEEEEEESTTSCCCBT
T ss_pred ecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCC---EEEEEEeCCccccccc
Confidence 654321 23458999999 999999966677777665 8999999999999999
Q ss_pred CChhhhhhccC-----------CCCeeecccEEEEecCCcEEEEcc
Q 005991 509 KNEVQTREVID-----------GDGWLHTGDIGLWLPGGRLKIIDR 543 (666)
Q Consensus 509 ~~~~~t~~~~~-----------~~gw~~TGDlg~~~~dG~l~i~GR 543 (666)
++|+.|+++|+ .+|||||||+|+++ ||+|+|+||
T Consensus 436 ~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 436 QKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999995 57899999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=2.8e-53 Score=444.70 Aligned_cols=303 Identities=15% Similarity=0.164 Sum_probs=260.7
Q ss_pred CCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccccccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCCHHH
Q 005991 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLK 334 (666)
Q Consensus 255 ~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~ 334 (666)
.|+++||+|||||||.||||++||+++.+.+......++++++|++++++|++|++++..++.++..|+++++.+.. ..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~-~~ 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT-AN 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC-SC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc-cc
Confidence 37899999999999999999999999999999888889999999999999999999999988999999999887632 23
Q ss_pred HHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHHHHHhCCceE
Q 005991 335 LMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVR 414 (666)
Q Consensus 335 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~lr 414 (666)
.++.++++++|++.++|+++..|++.... ..+ .+++|
T Consensus 115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~~--------------------------------~~~-----------l~~lr 151 (358)
T 4gs5_A 115 PLAGLDHADFDFVAMVPMQLQSILENSAT--------------------------------SGQ-----------VDRLG 151 (358)
T ss_dssp TTTTCSSCCCSEEEECHHHHHHHHHCTTT--------------------------------GGG-----------GGGGC
T ss_pred HHHHHHHhCCeEEEcChHHHHHhhccccc--------------------------------ccc-----------CCcce
Confidence 46678899999999999999988752100 000 14899
Q ss_pred EEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEEEEecCCCCCCCCCCCCCcc
Q 005991 415 FMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRG 494 (666)
Q Consensus 415 ~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~~~~~~~~~G 494 (666)
.+++||+++++++.+++++ ++++++++||+||++..++.........+.+|.+.||+++.+.+ .|
T Consensus 152 ~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~--------------~G 216 (358)
T 4gs5_A 152 KVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE--------------RG 216 (358)
T ss_dssp SEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT--------------TS
T ss_pred EEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeeccCCCeEEEecC--------------cC
Confidence 9999999999999999987 69999999999999988887777777788999999999988744 69
Q ss_pred EEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeeccHHHHHHH---hcCcCc
Q 005991 495 EICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVY---AKCKFV 571 (666)
Q Consensus 495 El~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~eIE~~l---~~~p~V 571 (666)
||+++|+.. .+|||+|||+|++|+|| ++|+||+||+||+ +|+||+|.|||++| .+||+|
T Consensus 217 el~~~g~~~----------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~p~V 278 (358)
T 4gs5_A 217 CLHISGAVT----------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAAVFHHLNI 278 (358)
T ss_dssp EEEEESGGG----------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHHHHTC
T ss_pred ceEEecccc----------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHHhccCCCc
Confidence 999998632 58999999999999988 7778999999997 89999999999887 468999
Q ss_pred ceEEEE-EeCCC---CeEEEEEEcCh-----hHHHHHHHHcCCCcccccccccCcchhHHH-HHHHHhhhhhhhhhccc
Q 005991 572 LQCFIY-GDSFN---SCLVAIVAVDP-----DVLKDWAASQGIKVIYCFSFRANSHVIFIA-LIHNLCQLYSSKELFRS 640 (666)
Q Consensus 572 ~~~~V~-g~~~~---~~~va~vv~~~-----~~l~~~~~~~~l~~~~~~~~~~p~~i~~v~-~~~~~~gK~~r~~l~~~ 640 (666)
.+|+|+ +.+++ +.++|+|++.. ++++++++++ |+ .|++|+.|++++ +|++.+||++|++|++.
T Consensus 279 ~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~~~l~~~-L~-----~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 351 (358)
T 4gs5_A 279 GNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLTAEIRSR-VS-----TYENPKHIYFAKAFAKTQTDKIDKRATFQK 351 (358)
T ss_dssp CCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHHHHHHHH-SC-----GGGSCSCEEEESSCCBCTTSCBCHHHHHHH
T ss_pred cEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHHHHHHhh-CC-----CCCCceEEEEECCcCCCCCCChhHHHHHHH
Confidence 998886 44433 57888888643 6789999998 98 999999999995 88888899999999864
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.6e-49 Score=428.43 Aligned_cols=339 Identities=17% Similarity=0.142 Sum_probs=270.6
Q ss_pred EehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccc---ccccCCCcEEEEcCCh-HHH
Q 005991 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL---MVQFYPSDIYMSYLPL-AHI 309 (666)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl-~h~ 309 (666)
.+.+++.... +.......++++++|+|||||||.||||++||+++...+..... .+++.++|++++.+|+ +|.
T Consensus 73 ~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 149 (443)
T 2y4o_A 73 STKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFT 149 (443)
T ss_dssp BCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSH
T ss_pred CcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccc
Confidence 4556665432 11223456789999999999999999999999998876554332 4678899999999998 578
Q ss_pred HHHHHHHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005991 310 YERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV 388 (666)
Q Consensus 310 ~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~ 388 (666)
.++...+.++..|+++++.+ +++..+++.|+++++|+++++|+++..|++.......
T Consensus 150 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~---------------------- 207 (443)
T 2y4o_A 150 GGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGM---------------------- 207 (443)
T ss_dssp HHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTC----------------------
T ss_pred cHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCC----------------------
Confidence 87777888999999998876 7999999999999999999999999988764321100
Q ss_pred cCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhh-hhccCCCCCCCCCccC
Q 005991 389 SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCI-ISAIDKGDNLSGHVGS 467 (666)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~~~~vG~ 467 (666)
.. ..+++|.+++||+++++++.+++++.+|+++++.||+||+++. ++.... ....+ .+.
T Consensus 208 ---~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~-~~~~g-~~~ 267 (443)
T 2y4o_A 208 ---DP---------------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECV-ETKDG-PVI 267 (443)
T ss_dssp ---CG---------------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECT-TTCCS-EEE
T ss_pred ---Cc---------------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccC-CCCCc-eEE
Confidence 00 0148999999999999999999999899999999999998543 222221 11112 455
Q ss_pred CccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecC-CcE-----EEE
Q 005991 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG-GRL-----KII 541 (666)
Q Consensus 468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d-G~l-----~i~ 541 (666)
|.++++++|+|+++++.++.|+ .|||+|+|. |++.| .++||+|||+|+++++ |++ +|+
T Consensus 268 ~~~~~~~~i~d~~~g~~~~~G~---~Gel~v~~~------------t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~ 331 (443)
T 2y4o_A 268 WEDHFYPEIIDPVTGEVLPDGS---QGELVFTSL------------TKEAM-PVIRYRTRDLTALLPPTARAMRRLAKIT 331 (443)
T ss_dssp CTTTEEEEEECTTTCCBCCTTC---CEEEEEEES------------SCSSS-CCSSEEEEEEECEECCSSSSSCEECCCC
T ss_pred ccCCeEEEEEcCCCCCCCCCCC---ceEEEEeCC------------CcccC-hhheeecCCEEEEcCCCCCCccccCccc
Confidence 6789999999976677777665 899999983 34556 6899999999999999 987 899
Q ss_pred ccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeC---CCCeEEEEEEcCh-----------hHHHHHHHHcCCCc
Q 005991 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS---FNSCLVAIVAVDP-----------DVLKDWAASQGIKV 607 (666)
Q Consensus 542 GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~-----------~~l~~~~~~~~l~~ 607 (666)
||+||+||+ +|++|+|.|||++|.+||+|.+++|++.+ ..+.++|+|++++ ++++++++++ |+
T Consensus 332 GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~-l~- 408 (443)
T 2y4o_A 332 GRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHR-IK- 408 (443)
T ss_dssp EESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHHH-HH-
T ss_pred cccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHHHHHHHH-HH-
Confidence 999999997 89999999999999999999999988743 2367889998875 4678888887 76
Q ss_pred cccccc-ccCcchhHH---HHHHHHhhhhhhhhhccc
Q 005991 608 IYCFSF-RANSHVIFI---ALIHNLCQLYSSKELFRS 640 (666)
Q Consensus 608 ~~~~~~-~~p~~i~~v---~~~~~~~gK~~r~~l~~~ 640 (666)
.+ ++|..|.++ ++|++.+||++|+..+|.
T Consensus 409 ----~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~r~ 441 (443)
T 2y4o_A 409 ----TMVGVSSGVTVLAAGGIPATATGKARRVIDRRQ 441 (443)
T ss_dssp ----HHTCCCCEEEEECTTCSCCCTTSCCCSEEECCC
T ss_pred ----HHhCCceEEEEeCCCcccCccCCcceEEEeccC
Confidence 55 588888777 588888899999877663
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=1.7e-48 Score=421.19 Aligned_cols=323 Identities=16% Similarity=0.160 Sum_probs=259.4
Q ss_pred CCCC-CCcEEEEeccCCCCCccEEEecHHHHHHHHhhccc---ccccCCCcEEEEcCChHHHHHHH-HHHHHHHhCcEEE
Q 005991 252 PPKP-EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL---MVQFYPSDIYMSYLPLAHIYERA-NQIVSVYYGVAVG 326 (666)
Q Consensus 252 ~~~~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~~~~-~~~~~l~~G~~~~ 326 (666)
...+ +++++|+|||||||.||||++||+++.+.+..... .+++.++|++++++|+.|..+.. ..+.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3456 89999999999999999999999999877665533 35788999999999987655544 4677899999999
Q ss_pred Eec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCChhhhHHhhHHH
Q 005991 327 FYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKI 405 (666)
Q Consensus 327 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~ 405 (666)
+.+ +++..+++.|++++||+++++|+++..|++....... .+
T Consensus 161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------------~~------------ 203 (436)
T 3qov_A 161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGI-------------------------DP------------ 203 (436)
T ss_dssp CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTC-------------------------CT------------
T ss_pred eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCC-------------------------Cc------------
Confidence 876 7999999999999999999999999998875322110 00
Q ss_pred HHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhhhhccCCCCCCCCCccCCccCcEEEEEecCCCCCC
Q 005991 406 RERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT 485 (666)
Q Consensus 406 ~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ivd~~~~~~~ 485 (666)
..+++|.+++||+++++++.+++++.+|+++++.||+||+++.++..... .....|.|.++++++|+|++++..+
T Consensus 204 ---~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~g~~~~~~~~~v~i~d~~~g~~~ 278 (436)
T 3qov_A 204 ---RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ--EQNGMHFWEDCYLVEIIDPETGEPV 278 (436)
T ss_dssp ---TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT--TCSSEEECTTTEEEEEECTTTCSBC
T ss_pred ---ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC--CCCeeEEccCceEEEEEECCCCCCC
Confidence 01489999999999999999999999999999999999996542222221 1123677788999999997788888
Q ss_pred CCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecCC------c---EEEEccCCCeEEcCCeeee
Q 005991 486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGG------R---LKIIDRKKNIFKLAQGEYV 556 (666)
Q Consensus 486 ~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG------~---l~i~GR~~d~ikl~~G~~v 556 (666)
+.|+ .|||+|+|. |++.| .++||+|||+|+++++| + ++|+||+||+||+ +|++|
T Consensus 279 ~~g~---~Gel~v~~~------------~~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-~G~~v 341 (436)
T 3qov_A 279 PEGE---IGELVLTTL------------DREMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-KGVNI 341 (436)
T ss_dssp STTC---CEEEEEEES------------SCCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-TTEEE
T ss_pred CCCC---ceEEEEecc------------CcCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-CCEEE
Confidence 7775 899999984 34455 78999999999999998 5 6999999999998 89999
Q ss_pred ccHHHHHHHhcCcCcceEEEEEeCC---CCeEEEEEEcC---------hhHHHHHHHHcCCCccccccc-ccCcchhHHH
Q 005991 557 APEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVD---------PDVLKDWAASQGIKVIYCFSF-RANSHVIFIA 623 (666)
Q Consensus 557 ~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~---------~~~l~~~~~~~~l~~~~~~~~-~~p~~i~~v~ 623 (666)
+|.|||++|.+||+|.+++|++.++ .+.++|+|+++ .++++++++++ ++ .+ ++|..+.+++
T Consensus 342 ~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~-l~-----~~~~~p~~i~~v~ 415 (436)
T 3qov_A 342 FPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELSDLSTDNYIELEKIRRDIIRQ-LK-----DEILVTPKVKLVK 415 (436)
T ss_dssp CHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHH-HH-----HHHSSCCEEEEEC
T ss_pred CHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEcCccccchhhHHHHHHHHHHH-HH-----HhcCCceEEEEeC
Confidence 9999999999999999999988654 46899999975 34688888888 76 66 8899988885
Q ss_pred ---HHHHHhhhhhhhhhccc
Q 005991 624 ---LIHNLCQLYSSKELFRS 640 (666)
Q Consensus 624 ---~~~~~~gK~~r~~l~~~ 640 (666)
+|++. ||++|...+|.
T Consensus 416 ~~~lP~t~-GKi~R~~~~R~ 434 (436)
T 3qov_A 416 KGSLPQSE-GKAVRVKDLRD 434 (436)
T ss_dssp TTCCC--------CEEECSC
T ss_pred CCcccCcC-CcceEEEecCC
Confidence 88888 99999877765
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=4.4e-48 Score=418.03 Aligned_cols=337 Identities=18% Similarity=0.128 Sum_probs=269.2
Q ss_pred EehHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhccc---ccccCCCcEEEEcCCh-HHH
Q 005991 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL---MVQFYPSDIYMSYLPL-AHI 309 (666)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl-~h~ 309 (666)
.+.+++..... .......++++++|+|||||||.||||++||+++...+..... .+++.++|++++.+|+ +|.
T Consensus 71 ~~~~~l~~~~~---~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 147 (437)
T 2y27_A 71 TTKGDLRDSYP---FGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFT 147 (437)
T ss_dssp BCHHHHHHTTT---TTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSH
T ss_pred CCHHHHHhcCC---CccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccc
Confidence 44555554321 1223456799999999999999999999999998876654332 4678899999999998 788
Q ss_pred HHHHHHHHHHHhCcEEEEec-CCHHHHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005991 310 YERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV 388 (666)
Q Consensus 310 ~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~ 388 (666)
.++...+.++..|+++++.+ +++..+++.|++++||+++++|+++..|++.......
T Consensus 148 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~---------------------- 205 (437)
T 2y27_A 148 GGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGL---------------------- 205 (437)
T ss_dssp HHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTC----------------------
T ss_pred cchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCC----------------------
Confidence 88877888999999998776 6999999999999999999999999998774322100
Q ss_pred cCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHhCCccccCcccchhhhh-hhccCCCCCCCCCccC
Q 005991 389 SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCI-ISAIDKGDNLSGHVGS 467 (666)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~~~~vG~ 467 (666)
.. ..+++|.+++||+++++++.+++++.+|+++++.||+||+++. ++..... . ....+.
T Consensus 206 ---~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~-~-~~g~~~ 265 (437)
T 2y27_A 206 ---DP---------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVE-T-KDGPTI 265 (437)
T ss_dssp ---CG---------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTT-T-CSSCEE
T ss_pred ---Cc---------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCC-C-CCceeE
Confidence 00 0148999999999999999999998889999999999998543 3322221 1 112556
Q ss_pred CccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEec-CCcE-----EEE
Q 005991 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP-GGRL-----KII 541 (666)
Q Consensus 468 p~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~-dG~l-----~i~ 541 (666)
|.++++++|+|++++..++.|+ .|||+|+|. |++.| .++||+|||+|++++ +|++ +|+
T Consensus 266 ~~~~~~~~i~d~~~g~~~~~g~---~Gel~v~~~------------t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~ 329 (437)
T 2y27_A 266 WEDHFYPEIIDPETGEVLPDGE---LGELVFTSL------------TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKIT 329 (437)
T ss_dssp CTTTEEEEEECTTTCCBCCTTC---CEEEEEEES------------SCSSS-CCCSEEEEEEECEECCSSSSSCEECCCC
T ss_pred ccCceEEEEEcCCCCCCCCCCC---ccEEEEecC------------CcCCc-hhheeecCCEEEEeCCCCCCccccCccc
Confidence 7789999999976677777665 899999983 44556 689999999999999 6986 999
Q ss_pred ccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeC---CCCeEEEEEEcCh---------hHHHHHHHHcCCCccc
Q 005991 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS---FNSCLVAIVAVDP---------DVLKDWAASQGIKVIY 609 (666)
Q Consensus 542 GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~---------~~l~~~~~~~~l~~~~ 609 (666)
||+||+||+ +|++|+|.+||++|.+||+|.+++|++.+ ..+.++|+|++++ ++++++++++ |+
T Consensus 330 GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~-l~--- 404 (437)
T 2y27_A 330 GRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYD-IK--- 404 (437)
T ss_dssp EEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHH-HH---
T ss_pred cccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHHHHH-HH---
Confidence 999999998 89999999999999999999999888743 2468899998753 4678888887 76
Q ss_pred cccc-ccCcchhHH---HHHHHHhhhhhhhhhcc
Q 005991 610 CFSF-RANSHVIFI---ALIHNLCQLYSSKELFR 639 (666)
Q Consensus 610 ~~~~-~~p~~i~~v---~~~~~~~gK~~r~~l~~ 639 (666)
.+ ++|..|.++ ++|++. ||++|+..+|
T Consensus 405 --~~~~~p~~v~~v~~~~lP~t~-GKi~r~~~~R 435 (437)
T 2y27_A 405 --SLIGVTAVINVLPVNGIERSV-GKARRVVDKR 435 (437)
T ss_dssp --HHHCCCEEEEECCTTCSCCCS-SSCCCEEECC
T ss_pred --HhcCCceEEEEeCCCCccCCC-CcceEEEecC
Confidence 65 688888887 488888 9999988766
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=1.1e-30 Score=275.16 Aligned_cols=238 Identities=16% Similarity=0.182 Sum_probs=175.9
Q ss_pred CCCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhc---ccccccCCCcEEEEcCCh-HHHHHHHHHHHHHHhCcEEEEe
Q 005991 253 PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF---SLMVQFYPSDIYMSYLPL-AHIYERANQIVSVYYGVAVGFY 328 (666)
Q Consensus 253 ~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~pl-~h~~~~~~~~~~l~~G~~~~~~ 328 (666)
..++++++|+|||||||.||||++||+++.+.+.+. ....++.++|++++.+|+ +|.+++...+.++..|+.++..
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 467899999999999999999999999999888743 344678899999999999 9999998888889999944433
Q ss_pred cCCHH-----------------------HHHHHHHhhcCeEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 005991 329 QGDNL-----------------------KLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQ 385 (666)
Q Consensus 329 ~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~ 385 (666)
.+++. .+++.|+++++|++.++|+++..|++.....
T Consensus 168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~--------------------- 226 (369)
T 3hgu_A 168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV--------------------- 226 (369)
T ss_dssp CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH---------------------
T ss_pred cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh---------------------
Confidence 46777 7888999999999999999999887631100
Q ss_pred HHHcCCCCChhhhHHhhHHHHHHhCCceEEEEecCCCCcHHHHHHHH-HHh-CCccccCcccchhhhhhhccCCCCCCCC
Q 005991 386 AIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLK-VCF-GCQVMEGYGMTETSCIISAIDKGDNLSG 463 (666)
Q Consensus 386 ~~~~~~~~~~~~d~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~-~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~ 463 (666)
....+++|.+++||+++++++.++++ +.+ ++++++.||+||+++++..... .
T Consensus 227 ---------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~ 280 (369)
T 3hgu_A 227 ---------------------LQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----T 280 (369)
T ss_dssp ---------------------HHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----C
T ss_pred ---------------------ccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----c
Confidence 00003799999999999999999999 888 8999999999998865533211 1
Q ss_pred CccCC------ccCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecC--
Q 005991 464 HVGSP------NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG-- 535 (666)
Q Consensus 464 ~vG~p------~~~~~v~ivd~~~~~~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d-- 535 (666)
++|+| .++++++|+|+++++.++.|+ .|||+|++.. ++.+ -.+|+|||++.+.+.
T Consensus 281 ~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~---~GEl~vt~l~------------~~~~--l~ry~tgD~~~~~~~~~ 343 (369)
T 3hgu_A 281 SESQQVIYDSFSPFITYDVVDSITAQTVEYGE---RGNVIVTHLS------------PWAF--YPRVAERDTAIRLPGVS 343 (369)
T ss_dssp TTCSSCEEECCTTTEEEEEECTTTCSBCCTTC---EEEEEEEEEE------------TTEE--EEEEEEEEEEEEECCST
T ss_pred cCCCcccccCCCCCeEEEEECCCCCcCCCCCC---ceEEEEEEcC------------cccc--cccccCCceEEEecCCC
Confidence 58999 999999999965788887775 8999999742 1112 234888888877543
Q ss_pred C-------cEEEEccCCCeEEcCCeee
Q 005991 536 G-------RLKIIDRKKNIFKLAQGEY 555 (666)
Q Consensus 536 G-------~l~i~GR~~d~ikl~~G~~ 555 (666)
| .+..++|.++..|| .|.+
T Consensus 344 g~~~d~~~~v~~~~~~~~~~~i-~gv~ 369 (369)
T 3hgu_A 344 GFAGDRLADIEPLKISEGRKVI-EGVY 369 (369)
T ss_dssp TCSSCEEEEEEECC-------------
T ss_pred CCcCcccccceeccccCCCcee-eecC
Confidence 2 35677888888887 5653
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.07 E-value=1.5e-11 Score=104.12 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=60.2
Q ss_pred ccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCCC---CeEEEEEEcCh---------hHHHHHHHHcCCCccc
Q 005991 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN---SCLVAIVAVDP---------DVLKDWAASQGIKVIY 609 (666)
Q Consensus 542 GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~~~~~~l~~~~ 609 (666)
.|.|||||+ +|.||+|.|||++|.+||+|.+++|++.++. +.++++|+..+ +++.++++++ +.
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~-l~--- 75 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQ-LK--- 75 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHH-HH---
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHH-HH---
Confidence 389999998 8999999999999999999999998875533 56777777532 2344444444 32
Q ss_pred ccccccCcchhHHH---HHHHHhhhhhhh
Q 005991 610 CFSFRANSHVIFIA---LIHNLCQLYSSK 635 (666)
Q Consensus 610 ~~~~~~p~~i~~v~---~~~~~~gK~~r~ 635 (666)
..+.+|..+.++. +|++ +||+.|-
T Consensus 76 -~~~gv~~~v~~v~~~~lPrt-sGKi~Rv 102 (109)
T 3lax_A 76 -DEILVTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp -HHHSSCCEEEEECTTCSCCC----CCCE
T ss_pred -HHhCCccceEEEcCCeecCC-CCCcchh
Confidence 1334555666663 6775 6998773
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.04 E-value=2.3e-11 Score=102.80 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=63.2
Q ss_pred ccCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEEeCC---CCeEEEEEEcC---------hhHHHHHHHHcCCCccc
Q 005991 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVD---------PDVLKDWAASQGIKVIY 609 (666)
Q Consensus 542 GR~~d~ikl~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~---------~~~l~~~~~~~~l~~~~ 609 (666)
||.||+||+ +|+||+|.+||+++.+||+|.++++++.++ .+.++++|++. .+++.++++++ +.
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~~~~~~~~~~~~~~l~~~i~~~-l~--- 75 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQ-LK--- 75 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHH-HH---
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEEcCccccchhHHHHHHHHHHHH-HH---
Confidence 899999998 899999999999999999999887766432 25788888752 13455666655 43
Q ss_pred ccccccCcchhHHH---HHHHHhhhhhhhh
Q 005991 610 CFSFRANSHVIFIA---LIHNLCQLYSSKE 636 (666)
Q Consensus 610 ~~~~~~p~~i~~v~---~~~~~~gK~~r~~ 636 (666)
..+.+|..|.+++ +|++ +||+.|..
T Consensus 76 -~~~~~~~~v~~v~~~~lPrt-sGKi~R~~ 103 (109)
T 3gxs_A 76 -DEILVTPRVKLVPKGALPKS-EGKAVRVK 103 (109)
T ss_dssp -HHHSSCCEEEEECTTCSCCC----CCCEE
T ss_pred -HhhCCceEEEEECCCCccCC-CCceEEEE
Confidence 2345555777774 8888 99998764
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.88 E-value=1.2e-08 Score=110.19 Aligned_cols=133 Identities=14% Similarity=0.188 Sum_probs=84.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHh-CCccc-cCcccchhhhhhhccCCCCCCCCCccCC-ccC-cEEEEEecCCCC-----
Q 005991 413 VRFMGSGASPLSPDVMDFLKVCF-GCQVM-EGYGMTETSCIISAIDKGDNLSGHVGSP-NPA-CEIKLVDVPEMN----- 483 (666)
Q Consensus 413 lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~~-~~v~ivd~~~~~----- 483 (666)
+..++.||. ..-...++..+ +.++. ..|++||+. ...+......+...|.. +|+ .-+..++.++.+
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~--~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v 376 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT--FGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVV 376 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE--EEECSCTTSCGGGCCEEECTTSSEEEEEECSTTCCSSCE
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce--eeeccCCCCCcccCceeecCCcEEEEEEeccccCCCcEe
Confidence 666677773 33334455544 67777 999999963 22222111122222322 233 334556543321
Q ss_pred CCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEec----CCcEEEEccCCCeEEcCCeeeeccH
Q 005991 484 YTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP----GGRLKIIDRKKNIFKLAQGEYVAPE 559 (666)
Q Consensus 484 ~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~----dG~l~i~GR~~d~ikl~~G~~v~p~ 559 (666)
...+.+.|..+||.|+..+ |.|+ |++||+.++.. ...+.|+||.++++.+ .|++++++
T Consensus 377 ~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~ 438 (581)
T 4eql_A 377 DLEDVKLGCTYEPVVTNFA---GLYR--------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEE 438 (581)
T ss_dssp EGGGCCTTCEEEEEEECSS---SCCS--------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCEEHH
T ss_pred CHHHcCCCceEEEEEeecc---ceee--------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeECCHH
Confidence 1233345568999998753 4332 99999999986 3579999999999997 89999999
Q ss_pred HHHHHHhcC
Q 005991 560 KIENVYAKC 568 (666)
Q Consensus 560 eIE~~l~~~ 568 (666)
+||+++.+.
T Consensus 439 ~v~~al~~a 447 (581)
T 4eql_A 439 DLFKAVSQA 447 (581)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999999643
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.86 E-value=1.1e-07 Score=103.05 Aligned_cols=131 Identities=12% Similarity=0.145 Sum_probs=83.0
Q ss_pred eEEEEecCCCCcHHHHHHHHHHh-CCccc-cCcccchhhhhhhccCCCCCCCCCccC-CccC-cEEEEEecCCCC-----
Q 005991 413 VRFMGSGASPLSPDVMDFLKVCF-GCQVM-EGYGMTETSCIISAIDKGDNLSGHVGS-PNPA-CEIKLVDVPEMN----- 483 (666)
Q Consensus 413 lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~~v~ivd~~~~~----- 483 (666)
+..++.||. ..-...++..+ +.+++ ..|++||+.. ..+......++..+. .+|+ .-+..++.++..
T Consensus 307 l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~--gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~ 381 (609)
T 4b2g_A 307 LDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECYF--GLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSR 381 (609)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCEE--EECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSCCCS
T ss_pred EEEEccCCh---HHHHHHHHHHcCCCccccCcccccceee--eeecCCCCCcccCceeecCCcEEEEEEecccccccccc
Confidence 556666773 33334455444 66766 8999999632 222211111222222 2333 334455543320
Q ss_pred -------CCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEec----CCcEEEEccCCCeEEcCC
Q 005991 484 -------YTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP----GGRLKIIDRKKNIFKLAQ 552 (666)
Q Consensus 484 -------~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~----dG~l~i~GR~~d~ikl~~ 552 (666)
.+.+.+.|..+||.|+.. .|.|+ |++||+++++. ...+.|+||.+++|.+ .
T Consensus 382 ~~~~~~v~l~eVe~G~~YelViTt~---~GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~-~ 443 (609)
T 4b2g_A 382 DSPPRLVDLAHVEVGKEYELVITTY---AGLYR--------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSI-D 443 (609)
T ss_dssp SSCCCCEEGGGCCTTCEEEEEEECT---TSCCS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred CCCCccccHhHcCCCCeEEEehhhh---hhhhh--------------eecCCEEEEeecCCCCcEEEEEEecCCeEEc-c
Confidence 022334456899999764 35554 99999999974 4689999999999997 8
Q ss_pred eeeeccHHHHHHHh
Q 005991 553 GEYVAPEKIENVYA 566 (666)
Q Consensus 553 G~~v~p~eIE~~l~ 566 (666)
|++|.+.+||+++.
T Consensus 444 Geki~~~~v~~av~ 457 (609)
T 4b2g_A 444 SDKTDEAELQKAVD 457 (609)
T ss_dssp SCCBCHHHHHHHHH
T ss_pred ccCCCHHHHHHHHH
Confidence 99999999999996
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.72 E-value=3.4e-07 Score=98.76 Aligned_cols=147 Identities=16% Similarity=0.121 Sum_probs=88.5
Q ss_pred CceE---EEEecCCCCcHHHHHHHHHHh-CCccc-cCcccchhhhhhhccCCCCCCCCCccC-CccC-cEEEEEecCCCC
Q 005991 411 GRVR---FMGSGASPLSPDVMDFLKVCF-GCQVM-EGYGMTETSCIISAIDKGDNLSGHVGS-PNPA-CEIKLVDVPEMN 483 (666)
Q Consensus 411 ~~lr---~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~~v~ivd~~~~~ 483 (666)
++++ .++.|+. ..-...++..+ +.++. ..|++||+. ...+......++..+. .+|+ .-+..+..++.+
T Consensus 302 Pnl~~i~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~--~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~ 376 (581)
T 4epl_A 302 PNAKYVYGIMTGSM---EPYVPKLRHYAGDLPLVSHDYGSSEGW--IAANVTPRLSPEEATFAVIPNLGYFEFLPVSETG 376 (581)
T ss_dssp TTCCCEEEECSGGG---GGGHHHHHHHHTTSCEEECCEEETTEE--EEECCCTTSCTTTCCEEECTTSCEEEEEEC----
T ss_pred CCCceEEEEeCCCh---HHHHHHHHHHcCCCccccCceecccee--eeeecCCCCCccccceeecCCcEEEEEEeccccc
Confidence 4664 4444543 23334555544 67777 999999963 2222222222222222 2333 223344433211
Q ss_pred -------CCCCCCCCCccEEEEeCCCcCccccCChhhhhhccCCCCeeecccEEEEecC----CcEEEEccCCCeEEcCC
Q 005991 484 -------YTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG----GRLKIIDRKKNIFKLAQ 552 (666)
Q Consensus 484 -------~~~~~~~~~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d----G~l~i~GR~~d~ikl~~ 552 (666)
.+.+.+.|..+||.|+..+ |.|. |++||+.++..- ..+.|+||.++++.+ .
T Consensus 377 ~~~~~~v~l~eve~G~~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~-~ 438 (581)
T 4epl_A 377 EGEEKPVGLTQVKIGEEYEVVITNYA---GLYR--------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI-N 438 (581)
T ss_dssp ---CCCEEGGGCCTTCEEEEEEESTT---SCSS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred CCCCceeeHHHcCCCCeEEEEEeecc---ceee--------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe-e
Confidence 1233445568999998753 4332 999999999742 479999999999998 7
Q ss_pred eeeeccHHHHHHHhc------Cc--CcceEEEEEeC
Q 005991 553 GEYVAPEKIENVYAK------CK--FVLQCFIYGDS 580 (666)
Q Consensus 553 G~~v~p~eIE~~l~~------~p--~V~~~~V~g~~ 580 (666)
|+++++.+||+++.+ .. .|.+-.++.+.
T Consensus 439 Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~ 474 (581)
T 4epl_A 439 IDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDV 474 (581)
T ss_dssp SCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEEC
T ss_pred eeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCC
Confidence 999999999999953 22 36666666543
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=92.95 E-value=1.5 Score=45.95 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=89.9
Q ss_pred CCCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEe
Q 005991 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINR--PEWLIVDHACSAYSYISVP 167 (666)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~vp 167 (666)
.++.++.+.. ..|+++. ...+|.+.+...+..++..+...|+.++|++...++-+ ...+...++++..|+..++
T Consensus 88 ~~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 3456665443 2455553 35689999988888888888889999999999888853 3344567888999999987
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhc------CCCceEEEEeCC
Q 005991 168 LYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISE------IPSVHLIVVVGG 217 (666)
Q Consensus 168 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~------~~~l~~ii~~~~ 217 (666)
+.. ..++.+...+++.++.+++..+.....+.+.... .+.++.+++-++
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 220 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAE 220 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCc
Confidence 765 4788999999999999999998877766554321 246676666443
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=92.76 E-value=1.6 Score=45.71 Aligned_cols=122 Identities=11% Similarity=0.060 Sum_probs=89.4
Q ss_pred CCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEec
Q 005991 93 PDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINR--PEWLIVDHACSAYSYISVPL 168 (666)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~vpl 168 (666)
++.++.+.. ..|.+|. ...+|.+.+...+..++..+...|+.++|++...++-+ ...+...++++..|+..+++
T Consensus 91 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 91 REQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp GGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred hhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 455554433 1565554 34679999988888888888889999999999988863 34445678888999998887
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhh------cCCCceEEEEeCC
Q 005991 169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS------EIPSVHLIVVVGG 217 (666)
Q Consensus 169 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~ 217 (666)
... .++.+...+++.++.+++..+.....+.+... ..+.++.+++-++
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 222 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAE 222 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCC
Confidence 664 78899999999999999999887766655332 1256776666443
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=91.67 E-value=1.5 Score=45.87 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=90.2
Q ss_pred CCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEecC
Q 005991 94 DYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINR--PEWLIVDHACSAYSYISVPLY 169 (666)
Q Consensus 94 d~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~vpl~ 169 (666)
+.+|++.. ..|++|. ...+|.+.+...+..++..+...|+.++|++..+++-+ ...+..+++++..|+..++.+
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 45565443 2455553 45689999999898898889889999999999988753 445557788899999988876
Q ss_pred CCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhc------CCCceEEEEeCC
Q 005991 170 DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISE------IPSVHLIVVVGG 217 (666)
Q Consensus 170 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~------~~~l~~ii~~~~ 217 (666)
.. .++.+...+++.++.+++..+.....+.+.... ++.++.+++-++
T Consensus 164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 216 (436)
T 3qov_A 164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE 216 (436)
T ss_dssp SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence 54 678899999999999999998877766554321 456777766543
No 45
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=82.17 E-value=26 Score=37.46 Aligned_cols=120 Identities=12% Similarity=-0.043 Sum_probs=85.3
Q ss_pred CCCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhH--HH-HHHHHHhcCCeEE
Q 005991 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEW--LI-VDHACSAYSYISV 166 (666)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~--~~-~~lA~~~~G~~~v 166 (666)
.|+.+|++.. ..|.+|. ...+|.+.+...+...... .++.++|++...+|-...+ .. .+++++..|+..+
T Consensus 180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQL--SGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEe--CCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 4677777654 2454443 4578999887776655543 4788999998888866433 33 5788899999988
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhh----cCCCceEEEEeCC
Q 005991 167 PLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS----EIPSVHLIVVVGG 217 (666)
Q Consensus 167 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~l~~ii~~~~ 217 (666)
..+ ...++.+...+++.++.+++..+.....+.+... .++.++.+++-++
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence 765 4678899999999999999998887766654322 4567777776544
No 46
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=80.09 E-value=30 Score=36.39 Aligned_cols=118 Identities=16% Similarity=0.013 Sum_probs=83.2
Q ss_pred CCCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHh-HHHHHHHHHhcCCeEEec
Q 005991 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPE-WLIVDHACSAYSYISVPL 168 (666)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e-~~~~~lA~~~~G~~~vpl 168 (666)
.|+.+|++.. ..|.+|. ...+|.+.+...+..+.. ..++.++|++..++|-... -+..+++++..|+..+..
T Consensus 161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 4677777654 2455443 356899988877666554 4588999999988886533 233467788899988876
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhc-CCCceEEEEe
Q 005991 169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISE-IPSVHLIVVV 215 (666)
Q Consensus 169 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~l~~ii~~ 215 (666)
+ ...++.+...+++.++.+++..+.....+.+.... ...++.+++-
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~g 282 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLG 282 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEEC
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEe
Confidence 5 47889999999999999999998877776654322 1246655553
No 47
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=78.45 E-value=14 Score=39.67 Aligned_cols=119 Identities=9% Similarity=0.036 Sum_probs=82.5
Q ss_pred CCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhH--HHHHHHHHhcCCeEEecC
Q 005991 94 DYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEW--LIVDHACSAYSYISVPLY 169 (666)
Q Consensus 94 d~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~--~~~~lA~~~~G~~~vpl~ 169 (666)
+.+|++.. ..|.+|. ...+|.+.+...+......+...++.++|++..++|-...+ ...+++.+ .|+..+.++
T Consensus 192 ~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMN--SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEEC--CSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEe--CCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 66776554 2454443 45789998877766655443336888999998888865433 33456777 999888775
Q ss_pred CCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhh----cCCCceEEEEeC
Q 005991 170 DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS----EIPSVHLIVVVG 216 (666)
Q Consensus 170 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~l~~ii~~~ 216 (666)
...++.+...+++.++.+++..+.....+.+... .++.++.+++-+
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 318 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGG 318 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECS
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcC
Confidence 5788999999999999999998887776654321 345677666533
No 48
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=78.35 E-value=25 Score=37.65 Aligned_cols=120 Identities=14% Similarity=0.074 Sum_probs=84.0
Q ss_pred CCCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHH---HHHHHHhcCCeEE
Q 005991 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLI---VDHACSAYSYISV 166 (666)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~---~~lA~~~~G~~~v 166 (666)
.|+.+|++.. ..|.+|. ...+|.+.+...+..++.. .++.++|++...+|-...+-. .+++.+..|+..+
T Consensus 189 ~~~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 189 PADEVAFFQL--SGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CTTSEEEEEE--CCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CccceEEEEE--CCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 3566777654 2454443 4568999888777666544 588999999999886554433 4788889999888
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhh----cCCCceEEEEeCC
Q 005991 167 PLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS----EIPSVHLIVVVGG 217 (666)
Q Consensus 167 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~l~~ii~~~~ 217 (666)
... ...+..+...+++.++.+++..+.....+.+... .++.++.+++-++
T Consensus 264 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~ 317 (544)
T 3o83_A 264 MAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGA 317 (544)
T ss_dssp ECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESS
T ss_pred ECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCC
Confidence 765 4578888899999999999998877666554322 3466777776543
No 49
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=76.28 E-value=33 Score=36.34 Aligned_cols=118 Identities=15% Similarity=0.056 Sum_probs=80.1
Q ss_pred CCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHH--HHHHHHhcCCeEEec
Q 005991 93 PDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLI--VDHACSAYSYISVPL 168 (666)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~--~~lA~~~~G~~~vpl 168 (666)
|+.+|++.. ..|.+|. ...+|.+.+...+..++.. .++.++|++...+|-...+-. .+++.+ .|+..+.+
T Consensus 169 ~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMY--TSGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEE--ECC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEE--CCcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 466666544 2455443 3568999888777666554 488999999988887644333 345555 88888766
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhh----hcCCCceEEEEeCC
Q 005991 169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI----SEIPSVHLIVVVGG 217 (666)
Q Consensus 169 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~l~~ii~~~~ 217 (666)
. ...++.+...+++.++.++...+.....+.+.. ..++.++.+++-++
T Consensus 243 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe 294 (517)
T 3r44_A 243 P-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGA 294 (517)
T ss_dssp S-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSS
T ss_pred C-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCC
Confidence 4 578899999999999999999888776665432 13566777766443
No 50
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=74.35 E-value=55 Score=35.54 Aligned_cols=119 Identities=12% Similarity=0.012 Sum_probs=83.4
Q ss_pred CCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhH--HH-HHHHHHhcCCeEEe
Q 005991 93 PDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEW--LI-VDHACSAYSYISVP 167 (666)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~--~~-~~lA~~~~G~~~vp 167 (666)
|+.+|++.. ..|.+|. ...+|.+.+...+...... .++.+++++..++|-...+ .. .+++++..|+..+.
T Consensus 183 ~~~~a~ii~--TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQL--SGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEE--CCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 566776544 2455443 4578999887776665554 3788999999998855433 32 47888889998887
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhh------cCCCceEEEEeCC
Q 005991 168 LYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS------EIPSVHLIVVVGG 217 (666)
Q Consensus 168 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~ 217 (666)
... ..+..+...+++.++.++...+.....+.+... .++.++.+++-++
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe 312 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGA 312 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESS
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCC
Confidence 654 577888889999999999998877666554322 3556777766544
No 51
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=74.29 E-value=14 Score=37.23 Aligned_cols=105 Identities=14% Similarity=0.003 Sum_probs=70.6
Q ss_pred CCCCceEEEEEeccCccCCc--eEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEe
Q 005991 92 YPDYKYLGTRVRVDGTVGGY--KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINR--PEWLIVDHACSAYSYISVP 167 (666)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~vp 167 (666)
.++.++.+.. ..|.++.. ..+|.+.+...+..++..+...|+.++|++..+++-+ .--+...++++..|+++++
T Consensus 89 ~~~~~a~i~~--TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYE--SGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEE--ECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEE--CCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 3455565543 15555543 4578888888888777777788999999999988862 2223344555889996665
Q ss_pred cCCCCCHH-----------------------HHHHHHHhcCceEEEEccccHHHHH
Q 005991 168 LYDTLGPD-----------------------AVKYVVNHAEIEAIFCIPQTLNTLL 200 (666)
Q Consensus 168 l~~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~~ 200 (666)
.. ..+. ++...+++.++.++++.+.....+.
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 43 3444 6667899999999999877665543
No 52
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=72.70 E-value=23 Score=37.39 Aligned_cols=119 Identities=15% Similarity=0.110 Sum_probs=81.8
Q ss_pred CCCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCC--CCCCEEEEEcCCCHhH--HHHHHHHHhcCCeE
Q 005991 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGL--QKGVRIGLYLINRPEW--LIVDHACSAYSYIS 165 (666)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv--~~gd~V~i~~~n~~e~--~~~~lA~~~~G~~~ 165 (666)
.|+.+|++.. ..|.+|. ...+|.+.+...+..++. ..++ .+++++...+|-...+ ...+++++..|+..
T Consensus 151 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~ 225 (504)
T 1t5h_X 151 EPAQPAFIFY--TSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTY 225 (504)
T ss_dssp CTTSEEEEEE--CCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEE
T ss_pred CCCCeEEEEe--CCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceE
Confidence 4677777654 2454443 356888888766655543 3477 7888888888765443 24578889999998
Q ss_pred EecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhh-h-----cCCCceEEEEeC
Q 005991 166 VPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI-S-----EIPSVHLIVVVG 216 (666)
Q Consensus 166 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~-----~~~~l~~ii~~~ 216 (666)
+..+. ..++.+...+++.++.+++..+.....+.+.. . .++.++.+++-+
T Consensus 226 v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG 281 (504)
T 1t5h_X 226 VVVEE-FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAG 281 (504)
T ss_dssp EECSS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECC
T ss_pred EeCCC-CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcC
Confidence 87764 67888999999999999999988877776543 1 245666666543
No 53
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=70.78 E-value=26 Score=37.53 Aligned_cols=121 Identities=9% Similarity=0.048 Sum_probs=80.8
Q ss_pred CCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHh-HHHHHHHHHhcCCeEEecCC
Q 005991 94 DYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPE-WLIVDHACSAYSYISVPLYD 170 (666)
Q Consensus 94 d~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e-~~~~~lA~~~~G~~~vpl~~ 170 (666)
+.+|++.. ..|.+|. ...+|.+.+...+......+...++.+++++..++|-... -+...++++..|+..+.+.
T Consensus 190 ~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 266 (550)
T 3rix_A 190 KTIALIMN--SSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY- 266 (550)
T ss_dssp TSEEEEEE--C-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCEEEEEE--CCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-
Confidence 55666544 2444443 3568888887666554444434578899999888886543 2345677788899888764
Q ss_pred CCCHHHHHHHHHhcCceEEEEccccHHHHHHhhh----cCCCceEEEEeCC
Q 005991 171 TLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS----EIPSVHLIVVVGG 217 (666)
Q Consensus 171 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~l~~ii~~~~ 217 (666)
...++.+...+++.++.++++.+.....+.+... .++.++.+++-++
T Consensus 267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 317 (550)
T 3rix_A 267 RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGA 317 (550)
T ss_dssp SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSS
T ss_pred CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecC
Confidence 5788999999999999999999887776654321 3566777766443
No 54
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=68.84 E-value=20 Score=36.01 Aligned_cols=124 Identities=14% Similarity=0.105 Sum_probs=79.5
Q ss_pred HHHHHHhCCCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHh-HHHHHHHHHhc
Q 005991 85 FIYAVENYPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPE-WLIVDHACSAY 161 (666)
Q Consensus 85 ~~~~a~~~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e-~~~~~lA~~~~ 161 (666)
++...+.+.|.+|++.. ..|.++. ...+|.+.+...+..++. ..++.++|++..++|-... -+..++..+..
T Consensus 28 ~~~~~~w~~d~~a~Il~--TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~ 102 (358)
T 4gs5_A 28 YDFMEKWLGGAREFVLH--TSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMEL 102 (358)
T ss_dssp HHHHHHHHHTCSEEEEE--EECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred hhHhhccCCCCCEEEEE--CCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHh
Confidence 33334445677887654 2455554 357899998877666554 3588999999988886532 23445566777
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhh---cCCCceEEEEeC
Q 005991 162 SYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS---EIPSVHLIVVVG 216 (666)
Q Consensus 162 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~l~~ii~~~ 216 (666)
|+..+...+... ....+++.++..+...+.....+.+... .++.++.+++-+
T Consensus 103 g~~~~~~~~~~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG 157 (358)
T 4gs5_A 103 DWELTVTEPTAN---PLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGG 157 (358)
T ss_dssp TCEEEEECCCSC---TTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECS
T ss_pred CcEEEecCcccc---HHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcc
Confidence 877776665432 2346778899999988877666654322 345566666543
No 55
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=68.50 E-value=43 Score=35.98 Aligned_cols=121 Identities=14% Similarity=0.004 Sum_probs=80.4
Q ss_pred CCCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEEe
Q 005991 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWL--IVDHACSAYSYISVP 167 (666)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~~~vp 167 (666)
.|+.+|++.. ..|.+|. ...+|.+ +....... .....++.++|++..+++-...+- ..+++.+..|+..+.
T Consensus 204 ~~~d~a~i~~--TSGTTG~PKgV~~sh~-~~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~ 278 (570)
T 3c5e_A 204 GSQEASAIYF--TSGTSGLPKMAEHSYS-SLGLKAKM--DAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFV 278 (570)
T ss_dssp BTTSEEEEEE--CCCSSSSCCEEEEEHH-HHHHHHHH--HTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEE
T ss_pred CCCCcEEEEE--CCCCCCCCCEEEechH-HHHhhhhh--hhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEE
Confidence 3566666554 2455443 3467888 44321111 124568899999988888765433 356788888998877
Q ss_pred cCC-CCCHHHHHHHHHhcCceEEEEccccHHHHHHhh---hcCCCceEEEEeCC
Q 005991 168 LYD-TLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI---SEIPSVHLIVVVGG 217 (666)
Q Consensus 168 l~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~l~~ii~~~~ 217 (666)
... ...++.+...+++.++.+++..+.....+.+.. ..++.++.+++-++
T Consensus 279 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe 332 (570)
T 3c5e_A 279 HLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGE 332 (570)
T ss_dssp ECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESS
T ss_pred ecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCC
Confidence 653 678999999999999999999888776665431 12456777666544
No 56
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=68.37 E-value=43 Score=35.31 Aligned_cols=120 Identities=8% Similarity=-0.013 Sum_probs=82.4
Q ss_pred CCCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEec
Q 005991 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEW-LIVDHACSAYSYISVPL 168 (666)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~vpl 168 (666)
.++.+|++.. ..|.+|. ...+|.+.+...+..++. ..++.++|++..++|-+..+ +..+++++..|+..+.+
T Consensus 141 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 141 KEHETFYIIY--TSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CTTSEEEEEE--ECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 3566666544 2555554 356898888776665544 45788999999988876433 34578889999998876
Q ss_pred CCC--CCHHHHHHHHHhcCceEEEEccccHHHHHHhh----hcCCCceEEEEeC
Q 005991 169 YDT--LGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI----SEIPSVHLIVVVG 216 (666)
Q Consensus 169 ~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~l~~ii~~~ 216 (666)
... ..++.+...+++.++.+++..+.....+.... ..++.++.+++-+
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G 269 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCG 269 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECS
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEec
Confidence 543 46788899999999999999887766654322 1234566665543
No 57
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=67.11 E-value=24 Score=37.35 Aligned_cols=120 Identities=13% Similarity=0.043 Sum_probs=80.4
Q ss_pred CCCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEec
Q 005991 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEW-LIVDHACSAYSYISVPL 168 (666)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~vpl 168 (666)
.|+.+|++.. ..|.+|. ...+|.+.+...+..... ..++.++|++..++|-+..+ +..+++++..|+..+.+
T Consensus 142 ~~~d~a~i~~--TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 142 KGDENFYIIY--TSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CTTSEEEEEE--ECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 3566666544 2455443 356899888776655444 45889999999988865432 34578889999998877
Q ss_pred CCC--CCHHHHHHHHHhcCceEEEEccccHHHHHHhhh----cCCCceEEEEeC
Q 005991 169 YDT--LGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS----EIPSVHLIVVVG 216 (666)
Q Consensus 169 ~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~l~~ii~~~ 216 (666)
+.. ..++.+...+++.++.+++..+.....+..... .++.++.+++-+
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G 270 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCG 270 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECS
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEec
Confidence 653 467889999999999999998877655443221 244566666543
No 58
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=66.50 E-value=79 Score=33.17 Aligned_cols=117 Identities=9% Similarity=-0.014 Sum_probs=76.2
Q ss_pred CCCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEEe
Q 005991 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWL--IVDHACSAYSYISVP 167 (666)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~~~vp 167 (666)
.|+.+|++.. ..|.+|. ...+|.+.+...+..+.. ..++.++|++..++|-...+- ..+.+.+..|..+++
T Consensus 158 ~~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~ 232 (509)
T 3ivr_A 158 GAADGFVIIH--TAAVGGRPRGALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA 232 (509)
T ss_dssp CTTSEEEEEE--EEC--CCEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CccccEEEEe--CCCCCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe
Confidence 4566766544 1455443 356899888777666554 458899999999888654332 233334445555444
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhh--hcCCCceEEEEe
Q 005991 168 LYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI--SEIPSVHLIVVV 215 (666)
Q Consensus 168 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~l~~ii~~ 215 (666)
. ...++.+...+++.++.+++..+.....+.+.. ..++.++.++.-
T Consensus 233 -~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~ 280 (509)
T 3ivr_A 233 -A-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGL 280 (509)
T ss_dssp -S-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEE
T ss_pred -c-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheeccc
Confidence 3 678999999999999999998888776665432 234556665543
No 59
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=66.49 E-value=36 Score=36.24 Aligned_cols=122 Identities=11% Similarity=-0.041 Sum_probs=81.7
Q ss_pred CCCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHH-HHHHHHHhcCCeEEec
Q 005991 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWL-IVDHACSAYSYISVPL 168 (666)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~-~~~lA~~~~G~~~vpl 168 (666)
.|+.+|++.. ..|.++. ...+|.+.+...+.... .....++.++|++...+|-...+- ...++++..|+..+..
T Consensus 174 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~ 250 (541)
T 1v25_A 174 PERAACGMAY--TTGTTGLPKGVVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLP 250 (541)
T ss_dssp CTTSEEEEEE--ECSSSSSCEEEEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEEC
T ss_pred CCCCcEEEEE--CCCCCCCCcEeeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEee
Confidence 3566675543 2555554 34678887754433211 112347889999988888643332 2457788889998887
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhh----cCCCceEEEEeC
Q 005991 169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS----EIPSVHLIVVVG 216 (666)
Q Consensus 169 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~l~~ii~~~ 216 (666)
.....++.+...+++.++.+++..+.....+.+... .++.++.+++-+
T Consensus 251 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 302 (541)
T 1v25_A 251 GPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGG 302 (541)
T ss_dssp TTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECS
T ss_pred CCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECC
Confidence 777789999999999999999998887666654322 456677776643
No 60
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=65.50 E-value=39 Score=36.37 Aligned_cols=120 Identities=6% Similarity=-0.168 Sum_probs=83.1
Q ss_pred CCCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEEe
Q 005991 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWL--IVDHACSAYSYISVP 167 (666)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~~~vp 167 (666)
.|+.+|++.. ..|.+|. ...+|.+.+...+..++. ..++.++|++..++|-...+- ..+++.+..|+..+.
T Consensus 165 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQY--TSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEE--CSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEe--CcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 4677777654 2455443 457899988877766654 458899999999988775443 347888999999887
Q ss_pred cCCCC---CHHHHHHHHHhcCceEEEEccccHHHHHHhhh-------cCCCceEEEEeC
Q 005991 168 LYDTL---GPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS-------EIPSVHLIVVVG 216 (666)
Q Consensus 168 l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-------~~~~l~~ii~~~ 216 (666)
+.+.. .++.+...+++.++.++.+.+.....+.+... .++.++.+++-+
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg 298 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGA 298 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECS
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCC
Confidence 76532 56788889999999998887766555544311 345666666543
No 61
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=64.85 E-value=37 Score=37.29 Aligned_cols=121 Identities=12% Similarity=0.016 Sum_probs=81.9
Q ss_pred CCCceEEEEEeccCccCCc--eEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEEec
Q 005991 93 PDYKYLGTRVRVDGTVGGY--KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWL--IVDHACSAYSYISVPL 168 (666)
Q Consensus 93 pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~~~vpl 168 (666)
|+.+|++.. ..|.+|.. ..+|.+.+...+..... ...++.++|++...++-+...- ..+++.+..|++.+..
T Consensus 255 ~~d~a~ily--TSGTTG~PKgV~~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 255 AEDPLFILY--TSGSTGKPKGVLHTTGGYLVYAATTFK--YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp TTSEEEEEE--ECCSSSSCEEEEEESHHHHHHHHHHHH--HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred CCCCEEEEe--ccCCCCCCceEEECchHHHHHHHHHHH--HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 566666544 25555543 45777776544322111 2368899999988887664433 4567899999998877
Q ss_pred CCC---CCHHHHHHHHHhcCceEEEEccccHHHHHHhhh------cCCCceEEEEeCC
Q 005991 169 YDT---LGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS------EIPSVHLIVVVGG 217 (666)
Q Consensus 169 ~~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~ 217 (666)
+.. ..++.+..++++.++.++++.+.....+.+... .+++++.+++-++
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 388 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESS
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecC
Confidence 642 467899999999999999999887777665432 2466777776554
No 62
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=63.19 E-value=13 Score=28.23 Aligned_cols=45 Identities=7% Similarity=0.072 Sum_probs=37.8
Q ss_pred cHHHHHHHhcCcCcceEEEEEeCCCCeEEEEEEcChhHHHHHHHHc
Q 005991 558 PEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQ 603 (666)
Q Consensus 558 p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~~ 603 (666)
..++++.+.+.|.|.+|..+.-+ .++++-+.+++.+++.+++.++
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~-~D~ll~v~~~d~~~l~~~i~~~ 59 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGE-YDLIVKVETDTLKDLDQFITEK 59 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSS-CSEEEEEEESSHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCeeEEEEEccc-CCEEEEEEECCHHHHHHHHHHH
Confidence 37899999999999999887543 5788888889999999998765
No 63
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=59.93 E-value=38 Score=36.07 Aligned_cols=98 Identities=11% Similarity=0.104 Sum_probs=72.4
Q ss_pred CCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc---cccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEec-
Q 005991 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ- 329 (666)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~- 329 (666)
.|+.+|++.. .+| -.+|.+.+...+..+... .++.++|++..++|-... .....+.++..|+..+..+
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEeccCC
Confidence 5677876642 223 358999887766655443 578899999999887533 2344677889999988776
Q ss_pred -CCHHHHHHHHHhhcCeEEeechHHHHHHHH
Q 005991 330 -GDNLKLMDDLAVLKPTIFPSVPRLYNRIYA 359 (666)
Q Consensus 330 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 359 (666)
....++...++..++.+++..+.....+..
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 688889999999999999998877665544
No 64
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=59.87 E-value=57 Score=35.49 Aligned_cols=120 Identities=13% Similarity=0.052 Sum_probs=84.0
Q ss_pred CCCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEec
Q 005991 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEW-LIVDHACSAYSYISVPL 168 (666)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~vpl 168 (666)
.|+.+|++.. ..|.+|. ...+|.+.+...+. .....++.+++++..+++-+... +..+++.+..|+..+..
T Consensus 162 ~~~d~a~iiy--TSGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINF--SSGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEE--EBSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 4677776654 2555554 35678887754332 22345788999999988876543 34578888999988776
Q ss_pred C-CCCCHHHHHHHHHhcCceEEEEccccHHHHHHhh-hcCCCceEEEEeCC
Q 005991 169 Y-DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI-SEIPSVHLIVVVGG 217 (666)
Q Consensus 169 ~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~l~~ii~~~~ 217 (666)
+ ....++.+...+++.++..++..+.....+.+.. ..++.++.+++-++
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe 286 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGD 286 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeC
Confidence 3 3568899999999999999999887776665432 34567888877654
No 65
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=58.51 E-value=47 Score=35.76 Aligned_cols=121 Identities=9% Similarity=-0.128 Sum_probs=78.6
Q ss_pred CCCCceEEEEEeccCccCCce--EEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEEe
Q 005991 92 YPDYKYLGTRVRVDGTVGGYK--WMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWL--IVDHACSAYSYISVP 167 (666)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~~~vp 167 (666)
.|+.+|++.. ..|.+|..+ .+|...+...+ .......++.+++++....+...... ..+++.+..|+..+.
T Consensus 223 ~~~d~a~i~~--TSGTTG~PKgV~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 297 (580)
T 3etc_A 223 KNEDICLVYF--SSGTAGFPKMVEHDNTYPLGHI---LTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFV 297 (580)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEETTHHHHHH---HHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEE
T ss_pred CCCCcEEEEE--eCCCCCCccEEEeccHHHHHHH---HHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEE
Confidence 4566776554 256655544 34554333222 22222358889998888777664433 346888999999887
Q ss_pred cC-CCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhh---cCCCceEEEEeCC
Q 005991 168 LY-DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS---EIPSVHLIVVVGG 217 (666)
Q Consensus 168 l~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~l~~ii~~~~ 217 (666)
.+ ....++.+...+++.++.++++.+.....+.+... .++.++.+++-++
T Consensus 298 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe 351 (580)
T 3etc_A 298 YDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGE 351 (580)
T ss_dssp EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSS
T ss_pred ecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccC
Confidence 75 57789999999999999999998877666554211 2456676665443
No 66
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=57.72 E-value=43 Score=36.82 Aligned_cols=121 Identities=9% Similarity=-0.081 Sum_probs=78.6
Q ss_pred CCCceEEEEEeccCccCCc--eEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEEec
Q 005991 93 PDYKYLGTRVRVDGTVGGY--KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWL--IVDHACSAYSYISVPL 168 (666)
Q Consensus 93 pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~~~vpl 168 (666)
|+.+|++.. ..|.+|.. ..+|.+.+...+.... -...++.++|++...++-+...- ..+++.+..|++.+..
T Consensus 261 ~~d~a~ily--TSGTTG~PKgV~~sh~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~ 336 (663)
T 1ry2_A 261 SEDPLFLLY--TSGSTGAPKGVQHSTAGYLLGALLTM--RYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVF 336 (663)
T ss_dssp TTSCCEEEE--ECCSSSSCEEEEECSHHHHHHHHHHH--HHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEE
T ss_pred CCCceEEEe--ccCCCCCCceEEEchhHHHHHHHHHH--HHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEE
Confidence 466666544 25555543 3566666554332211 12468899999888777654332 4567889999998877
Q ss_pred CCC---CCHHHHHHHHHhcCceEEEEccccHHHHHHhhh------cCCCceEEEEeCC
Q 005991 169 YDT---LGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS------EIPSVHLIVVVGG 217 (666)
Q Consensus 169 ~~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~ 217 (666)
+.. ..++++..++++.++.++++.+.....+.+... .++.++.+++-++
T Consensus 337 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 394 (663)
T 1ry2_A 337 EGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGE 394 (663)
T ss_dssp CSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSS
T ss_pred CCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcC
Confidence 542 467889999999999999998887666654322 2455666665443
No 67
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=57.26 E-value=62 Score=34.45 Aligned_cols=103 Identities=9% Similarity=-0.096 Sum_probs=73.4
Q ss_pred CCCCcEEEEeccCC-CCCccEEEecHHHHHHHHhhcccc---cccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEec
Q 005991 254 KPEDIATICYTSGT-TGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ 329 (666)
Q Consensus 254 ~~~~~a~i~~TSGT-TG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~ 329 (666)
.|+.+|++....+. .+. .-.+|.+.+...+..+... .++.++|++..++|-... .....+.++..|+..+..+
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSID-YVMTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHhCCEEEccC
Confidence 46778876543221 121 2458888887766655443 578899999999886533 2334677889999988876
Q ss_pred --CCHHHHHHHHHhhcCeEEeechHHHHHHHH
Q 005991 330 --GDNLKLMDDLAVLKPTIFPSVPRLYNRIYA 359 (666)
Q Consensus 330 --~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 359 (666)
....++...++..++..++..+.....+..
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 678889999999999999998877665543
No 68
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=57.10 E-value=15 Score=27.64 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=36.5
Q ss_pred HHHHHHHhcCcCcceEEEEEeCCCCeEEEEEEcChhHHHHHHHHc
Q 005991 559 EKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQ 603 (666)
Q Consensus 559 ~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~~ 603 (666)
.++++.+.++|.|.+|..+.-+ .+.++-+.+++.+++.+++.++
T Consensus 16 ~~~~~~l~~~peV~~~~~vtG~-~d~l~~v~~~d~~~l~~~~~~~ 59 (83)
T 2zbc_A 16 DEVFERLKSMSEVTEVHVVYGV-YDIVVKVEADSMDKLKDFVTNT 59 (83)
T ss_dssp HHHHHHHTTCTTEEEEEECSSS-CSEEEEEECSSHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCeEEEEEEecc-CCEEEEEEECCHHHHHHHHHHH
Confidence 7889999999999999887543 4677777788999999998766
No 69
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=55.83 E-value=46 Score=35.57 Aligned_cols=122 Identities=10% Similarity=-0.046 Sum_probs=80.6
Q ss_pred CCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHH-----hCCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeE
Q 005991 94 DYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLL-----FHGLQKGVRIGLYLINRPEW-LIVDHACSAYSYIS 165 (666)
Q Consensus 94 d~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~-----~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~ 165 (666)
+.+|++.. ..|.++. ...+|.+.+...+..++..+. ...+...+++..+.+..... +..++.++..|+..
T Consensus 175 ~~~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 252 (562)
T 3ite_A 175 NLDAYLLY--TSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCA 252 (562)
T ss_dssp TSEEEEEE--ECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEE--CCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEE
Confidence 34455433 2555553 346899999888888777664 23567788888777766543 33467788889888
Q ss_pred EecCCCCCHHHHHHHHHhcCceEEEEccccHHHHHHhhhcCCCceEEEEeCC
Q 005991 166 VPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGG 217 (666)
Q Consensus 166 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~ 217 (666)
+........+.+...+++.++.+++..+.....+......++.++.+++-+.
T Consensus 253 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~~~~~~lr~~~~gG~ 304 (562)
T 3ite_A 253 VTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPEDAPHLVYLGVGGE 304 (562)
T ss_dssp EECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCGGGSTTCCEEEEESS
T ss_pred EecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCccccCceEEEEEecC
Confidence 7665444456777889999999999988766554433445677777776544
No 70
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=53.95 E-value=72 Score=34.14 Aligned_cols=120 Identities=9% Similarity=-0.017 Sum_probs=83.5
Q ss_pred CCCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCH-hHHHHHHHHHhcCCeEEec
Q 005991 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRP-EWLIVDHACSAYSYISVPL 168 (666)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~-e~~~~~lA~~~~G~~~vpl 168 (666)
.|+.+|++.. ..|.++. ...+|.+.+...... ....++.++|++..++|-+. -....+++++..|+..+..
T Consensus 212 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMF--TSGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEEC--CSSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 4677777654 2454443 356888877533221 23347889999998888753 3455678888999988876
Q ss_pred CC-CCCHHHHHHHHHhcCceEEEEccccHHHHHHhh-hcCCCceEEEEeCC
Q 005991 169 YD-TLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI-SEIPSVHLIVVVGG 217 (666)
Q Consensus 169 ~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~l~~ii~~~~ 217 (666)
.. ...+..+...+++.++.++...+.....+.+.. ..++.++.+++-++
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~ 336 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGE 336 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEecc
Confidence 54 567889999999999999999888776665432 34567887776554
No 71
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=48.65 E-value=18 Score=27.98 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=37.2
Q ss_pred cHHHHHHHhcCcCcceEEEEEeCCCCeEEEEEEcChhHHHHHHHHc
Q 005991 558 PEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQ 603 (666)
Q Consensus 558 p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~~ 603 (666)
..++++.+.++|.|.+|..+.-+ .+.++-+.+++.+++.+++.++
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~-~D~ll~v~~~d~~~l~~~l~~~ 59 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGP-YDLVALVRLKDVEELDDVVTQG 59 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSS-SSEEEEEEESSGGGHHHHCCCC
T ss_pred HHHHHHHHhcCCCeEEEEEeecC-CCEEEEEEECCHHHHHHHHHHh
Confidence 47889999999999999887543 5778888889999999998655
No 72
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=48.48 E-value=1.4e+02 Score=31.12 Aligned_cols=103 Identities=8% Similarity=-0.056 Sum_probs=73.6
Q ss_pred CCCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHh--HHHHHHHHHhcCCeEEe
Q 005991 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPE--WLIVDHACSAYSYISVP 167 (666)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e--~~~~~lA~~~~G~~~vp 167 (666)
.|+.+|++.. ..|.+|. ...+|.+.+...+..++..+ ++.++|++...+|-... ++..+++.+..|+..+.
T Consensus 153 ~~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVY--TSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEe--CCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 4567776654 2555553 35789999888877766655 78899998887776432 34457889999999887
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEccccHHHHHH
Q 005991 168 LYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLS 201 (666)
Q Consensus 168 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 201 (666)
+. ...++.+...+ +.++..++..+.....+.+
T Consensus 228 ~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 LG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp CS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 64 56677777777 6789999988877666554
No 73
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=48.33 E-value=1.1e+02 Score=31.48 Aligned_cols=102 Identities=13% Similarity=0.040 Sum_probs=71.7
Q ss_pred CCCCcEEEEecc--CCCCCccEEEecHHHHHHHHhhcccc---cccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEe
Q 005991 254 KPEDIATICYTS--GTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFY 328 (666)
Q Consensus 254 ~~~~~a~i~~TS--GTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~ 328 (666)
.|+.+|++.... +.+| ....+|.+.+...+..+... .+. ++|++..++|-...+ ....+.++..|+..+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEee
Confidence 567788776542 2222 34679999987776655543 344 899999888865332 33467788999998877
Q ss_pred cC-----CHHHHHHHHHhhcCeEEeechHHHHHHHH
Q 005991 329 QG-----DNLKLMDDLAVLKPTIFPSVPRLYNRIYA 359 (666)
Q Consensus 329 ~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 359 (666)
+. ...++...++..++.+++..+.....+..
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 52 46778889999999999998877665543
No 74
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=48.25 E-value=67 Score=33.94 Aligned_cols=95 Identities=13% Similarity=0.036 Sum_probs=69.8
Q ss_pred CCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc---cccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEec-
Q 005991 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ- 329 (666)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~- 329 (666)
.|+.+|++.. | ..+|.+.+...+..+... .++.++|++..++|-...+ ....+.++..|+..+..+
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCc
Confidence 4566776532 1 358998887766655443 5788999999998866432 334677888999988776
Q ss_pred -CCHHHHHHHHHhhcCeEEeechHHHHHHH
Q 005991 330 -GDNLKLMDDLAVLKPTIFPSVPRLYNRIY 358 (666)
Q Consensus 330 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 358 (666)
....++...++..++..++..+.....+.
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 135 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQNVT 135 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHHHHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhhHHH
Confidence 57888999999999999999887665443
No 75
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=45.77 E-value=1e+02 Score=32.87 Aligned_cols=92 Identities=11% Similarity=0.042 Sum_probs=67.4
Q ss_pred CCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc---cccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEec-
Q 005991 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ- 329 (666)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~- 329 (666)
.|+.+|++. . +-.+|.+.+...+..+... .++.++|++..++|-... .....+.++..|+..+..+
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSID-LFIGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEEeCC
Confidence 466777653 1 2368998887766555443 578899999999886632 2334677888999988876
Q ss_pred -CCHHHHHHHHHhhcCeEEeechHHHH
Q 005991 330 -GDNLKLMDDLAVLKPTIFPSVPRLYN 355 (666)
Q Consensus 330 -~~~~~~~~~i~~~~~t~~~~~P~~~~ 355 (666)
....++...++..++.+++..+....
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 57888999999999999998876543
No 76
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=42.20 E-value=1.1e+02 Score=32.01 Aligned_cols=82 Identities=11% Similarity=-0.029 Sum_probs=62.8
Q ss_pred EecHHHHHHHHhhcccc---cccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEec--CCHHHHHHHHHhhcCeEEee
Q 005991 275 VLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPS 349 (666)
Q Consensus 275 ~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~ 349 (666)
.+|.+.+...+..+... .++.++|++..++|-... .....+.++..|+..+..+ ....++...++..++.+++.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVE-ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 58999887776655443 578899999999886632 2334677889999988876 57888999999999999998
Q ss_pred chHHHHHH
Q 005991 350 VPRLYNRI 357 (666)
Q Consensus 350 ~P~~~~~l 357 (666)
.+.....+
T Consensus 107 ~~~~~~~~ 114 (503)
T 4fuq_A 107 DPSKRDGI 114 (503)
T ss_dssp CGGGTTTT
T ss_pred CchhhHHH
Confidence 87655433
No 77
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=42.12 E-value=1.8e+02 Score=30.32 Aligned_cols=120 Identities=8% Similarity=-0.045 Sum_probs=77.3
Q ss_pred CCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEecC
Q 005991 93 PDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEW-LIVDHACSAYSYISVPLY 169 (666)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~vpl~ 169 (666)
|+.+|++.. ..|.+|. ...+|.+.+...+..+.... ..++.+++++....+-+... +..+++++..|+..+.+.
T Consensus 144 ~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 220 (521)
T 3l8c_A 144 GDDNYYIIF--TSGTTGQPKGVQISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALP 220 (521)
T ss_dssp TTSEEEEEE--CCC---CCCEEEEEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECC
T ss_pred CCCcEEEEE--cCCCCCCCCEEEEehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcC
Confidence 456666554 2444443 45789998876554443221 25778888888877765433 445677888999888776
Q ss_pred CC--CCHHHHHHHHHhcCceEEEEccccHHHHHHhhh----cCCCceEEEEe
Q 005991 170 DT--LGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS----EIPSVHLIVVV 215 (666)
Q Consensus 170 ~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~l~~ii~~ 215 (666)
.. ...+.+...+...++.++...+.....+..... .++.++.+++-
T Consensus 221 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~g 272 (521)
T 3l8c_A 221 KELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFD 272 (521)
T ss_dssp GGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEEC
T ss_pred HHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEe
Confidence 54 367888999999999999998877655543221 34556666553
No 78
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=36.16 E-value=76 Score=26.98 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=38.3
Q ss_pred cHHHHHHHhcCcCcceEEEEEeCCCCeEEEEEEcChhHHHHHHHHcCCC
Q 005991 558 PEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQGIK 606 (666)
Q Consensus 558 p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~~~l~ 606 (666)
..++.+.+.++|.|.+|..+.-+ .+.++-+.+.+.+++.+++.+. +.
T Consensus 82 ~~~~~~~l~~~peV~~~~~vtG~-~d~~~~v~~~d~~~l~~~l~~~-l~ 128 (152)
T 2cg4_A 82 YPSALAKLESLDEVTEAYYTTGH-YSIFIKVMCRSIDALQHVLINK-IQ 128 (152)
T ss_dssp HHHHHHHHHTCTTEEEEEEESSS-CSEEEEEEESCHHHHHHHHHHT-TT
T ss_pred HHHHHHHHhCCcCeEEEEEEecc-cCEEEEEEECCHHHHHHHHHHH-hh
Confidence 46889999999999999987432 5677788889999999999766 43
No 79
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=35.57 E-value=80 Score=36.50 Aligned_cols=96 Identities=13% Similarity=0.077 Sum_probs=70.8
Q ss_pred CCCCcEEEEeccCCCCCccEEEecHHHHHHHHhhcccc---cccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEec-
Q 005991 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ- 329 (666)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~- 329 (666)
.|+.+|++.- .+| -.+|.+.+...+..+... .++.++|++..++|-... .....+.++..|+..+..+
T Consensus 74 ~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e-~~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPE-FVLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHH-HHHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHH-HHHHHHHHHHcCCEEEeeCC
Confidence 5778887642 223 358998887766655443 578899999999887632 2334677889999988876
Q ss_pred -CCHHHHHHHHHhhcCeEEeechHHHHHH
Q 005991 330 -GDNLKLMDDLAVLKPTIFPSVPRLYNRI 357 (666)
Q Consensus 330 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l 357 (666)
..+.++...++..++.+++..+.....+
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 6888899999999999999887665443
No 80
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=35.22 E-value=1.4e+02 Score=29.37 Aligned_cols=66 Identities=12% Similarity=-0.012 Sum_probs=46.8
Q ss_pred HHHhCC-CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccc
Q 005991 129 GLLFHG-LQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQ 194 (666)
Q Consensus 129 ~L~~~g-v~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 194 (666)
.+.+.| +++|+.|.+....+---..+.++|...|.-++.+-|...+..-...++..++++++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344555 488888645555677777788888888987665555544455567788999999999754
No 81
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=33.47 E-value=1.3e+02 Score=27.39 Aligned_cols=43 Identities=12% Similarity=-0.132 Sum_probs=32.6
Q ss_pred HHHHHHHHHHH-HHHhCcEEEEec--CCHHHHHHHHHhhcCeEEee
Q 005991 307 AHIYERANQIV-SVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPS 349 (666)
Q Consensus 307 ~h~~~~~~~~~-~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~ 349 (666)
.|..|...+-. .-..|..++... -.+..+.+.+++++|+++..
T Consensus 104 ~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 104 IHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp CCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 47788776444 445777777765 58899999999999997766
No 82
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=31.87 E-value=2e+02 Score=28.62 Aligned_cols=53 Identities=8% Similarity=0.046 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCC----------CCCHHHHHHHHHhcCceEEEE
Q 005991 135 LQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYD----------TLGPDAVKYVVNHAEIEAIFC 191 (666)
Q Consensus 135 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~----------~~~~~~l~~~l~~~~~~~vi~ 191 (666)
+++||.|.+..+.-..+. .++...|+.+++++. ....+.+...++. +.+++++
T Consensus 123 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 185 (407)
T 3nra_A 123 VARGDKVAIVQPDYFANR---KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA-GARVFLF 185 (407)
T ss_dssp CCTTCEEEEEESCCTHHH---HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-TCCEEEE
T ss_pred CCCCCEEEEcCCcccchH---HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh-CCcEEEE
Confidence 568898888777655433 455667776554432 1367788888876 5665543
No 83
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=31.69 E-value=1.2e+02 Score=36.26 Aligned_cols=120 Identities=10% Similarity=0.004 Sum_probs=82.3
Q ss_pred CCCCceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHH-HHHHHHHhcCCeEEec
Q 005991 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWL-IVDHACSAYSYISVPL 168 (666)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~-~~~lA~~~~G~~~vpl 168 (666)
.|+.+|++.. ..|++|. ...+|.+.+... .......++.++|++..+.+-+.+.. ..+++.+..|+..+..
T Consensus 605 ~~~~~ayiiy--TSGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMY--TSGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEe--CCCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 4677776654 2555554 356888877532 22223357889999988888765443 4577888899988877
Q ss_pred CC--CCCHHHHHHHHHhcCceEEEEccccHHHHHHhh-hcCCCceEEEEeCC
Q 005991 169 YD--TLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI-SEIPSVHLIVVVGG 217 (666)
Q Consensus 169 ~~--~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~l~~ii~~~~ 217 (666)
++ ...++.+...+++.++.+++..+.....+.+.. ..++.++.+++-++
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe 730 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGE 730 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESS
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecC
Confidence 65 467889999999999999998887766654421 22456777776554
No 84
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=29.89 E-value=1e+02 Score=26.55 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=36.8
Q ss_pred cHHHHHHHhcCcCcceEEEEEeCCCCeEEEEEEcChhHHHHHHHHc
Q 005991 558 PEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQ 603 (666)
Q Consensus 558 p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~~ 603 (666)
..++++.+.++|.|.+|..+..+ .++++-+.+.+.+++.+++.+.
T Consensus 85 ~~~~~~~l~~~peV~~~~~vtG~-~d~~~~v~~~d~~~l~~~l~~~ 129 (162)
T 2p5v_A 85 REDFAASVRKWPEVLSCFALTGE-TDYLLQAFFTDMNAFSHFVLDT 129 (162)
T ss_dssp HHHHHHHHTTCTTEEEEEEESSS-CSEEEEEEESSHHHHHHHHHHT
T ss_pred HHHHHHHHhcChhhhEeeeecCC-CCEEEEEEECCHHHHHHHHHHH
Confidence 46788889999999999876432 5777777888999999999766
No 85
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=28.56 E-value=4.1e+02 Score=25.67 Aligned_cols=78 Identities=10% Similarity=0.196 Sum_probs=44.8
Q ss_pred CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEec--CC--CCCHHHHHHHHHhcCceEEEEc-cc-------cHHHHHHh
Q 005991 135 LQKGVRIGLYLINRPEWLIVDHACSAYSYISVPL--YD--TLGPDAVKYVVNHAEIEAIFCI-PQ-------TLNTLLSF 202 (666)
Q Consensus 135 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl--~~--~~~~~~l~~~l~~~~~~~vi~~-~~-------~~~~~~~~ 202 (666)
+++||.|.+..+.-..+. .++...|+.++.+ ++ ....+.+...++. +.++|+.. .. ..+.+.++
T Consensus 105 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG~~~~~~~l~~l 180 (363)
T 3ffh_A 105 LDTTTNTVMATPTFVQYR---QNALIEGAEVREIPLLQDGEHDLEGMLNAIDE-KTTIVWICNPNNPTGNYIELADIQAF 180 (363)
T ss_dssp CSTTCEEEEEESSCHHHH---HHHHHHTCEEEEEECCTTSCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred ccCCCEEEEcCCChHHHH---HHHHHcCCEEEEecCCCCCCcCHHHHHHhccc-CCCEEEEeCCCCCcCCCcCHHHHHHH
Confidence 468999988887655533 3445567655544 32 2466788877754 56666543 21 13455555
Q ss_pred hhcCCCceEEEEeCC
Q 005991 203 ISEIPSVHLIVVVGG 217 (666)
Q Consensus 203 ~~~~~~l~~ii~~~~ 217 (666)
...... ...++.|+
T Consensus 181 ~~~~~~-~~~li~De 194 (363)
T 3ffh_A 181 LDRVPS-DVLVVLDE 194 (363)
T ss_dssp HTTSCT-TSEEEEEC
T ss_pred HHhCCC-CcEEEEeC
Confidence 555544 44555554
No 86
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=26.93 E-value=88 Score=26.99 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=35.3
Q ss_pred cHHHHHHHhcCcCcceEEEEEeCCCCeEEEEEEcChhHHHHHHHHc
Q 005991 558 PEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAASQ 603 (666)
Q Consensus 558 p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~~ 603 (666)
..++.+.+.++|.|.+|..+.. ..++++-+.+++.+++.+++.+.
T Consensus 79 ~~~~~~~l~~~peV~~~~~vtG-~~D~~l~v~~~d~~~l~~~l~~~ 123 (162)
T 3i4p_A 79 LKRFSEVVSEFPEVVEFYRMSG-DVDYLLRVVVPDIAAYDAFYKRM 123 (162)
T ss_dssp HHHHHHHHHHCTTEEEEEECCS-SCSEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEeeecCC-CCCEEEEEEECCHHHHHHHHHHH
Confidence 4688889999999999987643 24677777788988888887654
No 87
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=26.61 E-value=4.4e+02 Score=25.45 Aligned_cols=55 Identities=11% Similarity=0.034 Sum_probs=37.2
Q ss_pred CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEe--cCC--CCCHHHHHHHHHhcCceEEEEc
Q 005991 135 LQKGVRIGLYLINRPEWLIVDHACSAYSYISVP--LYD--TLGPDAVKYVVNHAEIEAIFCI 192 (666)
Q Consensus 135 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vp--l~~--~~~~~~l~~~l~~~~~~~vi~~ 192 (666)
+++||.|.+..+.-..+. .++...|+.++. +++ ....+.+...++..++++|++.
T Consensus 106 ~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYA---MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp CCTTCEEEEEESCSCCSC---HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcCCCHHHHH---HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEc
Confidence 578999988877655443 235567876554 444 3578899998887677777663
No 88
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=26.09 E-value=1.3e+02 Score=25.39 Aligned_cols=44 Identities=9% Similarity=0.035 Sum_probs=35.0
Q ss_pred HHHHHHHhcCcCcceEEEEEeCCCCeEEEEEE-cChhHHHHHHHHc
Q 005991 559 EKIENVYAKCKFVLQCFIYGDSFNSCLVAIVA-VDPDVLKDWAASQ 603 (666)
Q Consensus 559 ~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv-~~~~~l~~~~~~~ 603 (666)
.++++.+.++|.|.+|..+.-+ .+.++-+.+ .+.+++.+++.++
T Consensus 83 ~~~~~~l~~~peV~~~~~vtG~-~d~~~~v~~~~d~~~l~~~~~~~ 127 (151)
T 2dbb_A 83 DKVISEISDIEYVKSVEKGVGR-YNIIVRLLLPKDIKDAENLISEF 127 (151)
T ss_dssp HHHHHHHTTCTTEEEEEEEESS-CSEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEeEecCC-CCEEEEEEEcCCHHHHHHHHHHH
Confidence 5888899999999999987543 567777777 8889998888544
No 89
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=25.13 E-value=3.4e+02 Score=23.61 Aligned_cols=89 Identities=8% Similarity=-0.009 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHH---HHHhcCceEEEEccccHHH
Q 005991 122 ARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKY---VVNHAEIEAIFCIPQTLNT 198 (666)
Q Consensus 122 ~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~---~l~~~~~~~vi~~~~~~~~ 198 (666)
+...+...|.+.+ ++..+.|+++.....-...-.+...|..+..++..++.++-.. .++..+.+++|+.+.....
T Consensus 32 K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 109 (185)
T 2jgn_A 32 KRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 109 (185)
T ss_dssp HHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC-----
T ss_pred HHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcC
Confidence 3445555555543 5678889988765544444445567888888988877654333 3455677888876432221
Q ss_pred HHHhhhcCCCceEEEEeCC
Q 005991 199 LLSFISEIPSVHLIVVVGG 217 (666)
Q Consensus 199 ~~~~~~~~~~l~~ii~~~~ 217 (666)
-.+|.+..+|.++.
T Consensus 110 -----ldi~~~~~VI~~d~ 123 (185)
T 2jgn_A 110 -----LDISNVKHVINFDL 123 (185)
T ss_dssp ------CCCSBSEEEESSC
T ss_pred -----CCcccCCEEEEeCC
Confidence 14577777776553
No 90
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=24.85 E-value=2.7e+02 Score=29.30 Aligned_cols=84 Identities=12% Similarity=-0.023 Sum_probs=62.7
Q ss_pred EEEecHHHHHHHHhhcccc---cccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecC--C-------HHHHHHHHH
Q 005991 273 GAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQG--D-------NLKLMDDLA 340 (666)
Q Consensus 273 gV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~--~-------~~~~~~~i~ 340 (666)
+-.+|.+.+...+..+... .++.++|++..++|-... .....+.++..|+..+..+. . ...+...++
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSE-FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 3578999987776655544 578899999999887643 23346778899999887762 2 577888899
Q ss_pred hhcCeEEeechHHHHHH
Q 005991 341 VLKPTIFPSVPRLYNRI 357 (666)
Q Consensus 341 ~~~~t~~~~~P~~~~~l 357 (666)
..++..++........+
T Consensus 126 ~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHCCSEEEECGGGHHHH
T ss_pred hcCCCEEEecHHHHHHH
Confidence 99999999887765544
No 91
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=24.73 E-value=1.6e+02 Score=24.54 Aligned_cols=44 Identities=11% Similarity=0.223 Sum_probs=34.9
Q ss_pred cHHHHHHHhcCcCcceEEEEEeCCCCeEEEEEEcChhHHHHHHHH
Q 005991 558 PEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDVLKDWAAS 602 (666)
Q Consensus 558 p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~ 602 (666)
.+++++.+.++|.|.+|+.+..+ ...++-+.+.+.+++.+++.+
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~tG~-~d~~~~v~~~~~~~l~~~~~~ 121 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIAGA-ACYMLKINAESLEAVEDFINK 121 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEESS-SSEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHhcChhhheeeeeeCC-CCEEEEEEECCHHHHHHHHHH
Confidence 46788889999999999976532 467777778899999888864
No 92
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A {Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Probab=24.54 E-value=2.7e+02 Score=29.72 Aligned_cols=103 Identities=12% Similarity=-0.040 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHhCCCC------ceEEEEEeccCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC-
Q 005991 77 EIGTLHDNFIYAVENYPDY------KYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLIN- 147 (666)
Q Consensus 77 ~~~tl~~~~~~~a~~~pd~------~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n- 147 (666)
...++.+++..--+..||- ..++. +|-.+. ...+|-.-+.+.+..+|.+|.+.|.. ..|.|-.+.
T Consensus 39 ~~~~~~~l~~~~~~~~~~~~~~~~r~~FGT----~GiRG~~~~~~ln~~~v~~i~~A~a~~l~~~~~~--~~VvVG~D~R 112 (570)
T 3na5_A 39 DLINVAQLTAQYYVLKPEAGNAEHAVKFGT----SGHRGSAGRHSFNEPHILAIAQAIAEERAKNGIT--GPCYVGKDTH 112 (570)
T ss_dssp GCCCHHHHHHHHHHCCCCTTCGGGSCCCBT----TBEEECGGGTSSSHHHHHHHHHHHHHHHHHTTCC--SCEEEEECSS
T ss_pred HccChHHHHHHHhccCCCcCCccccceecC----CCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCC--CeEEEEeCCC
Confidence 4567778888777777763 22221 222111 13478888888889999999887643 245554443
Q ss_pred --CHhHHHHHHHH-HhcCCeEEecC--CCCCHHHHHHHHHhcC
Q 005991 148 --RPEWLIVDHAC-SAYSYISVPLY--DTLGPDAVKYVVNHAE 185 (666)
Q Consensus 148 --~~e~~~~~lA~-~~~G~~~vpl~--~~~~~~~l~~~l~~~~ 185 (666)
|.++....++. ...|+-++..+ --.|...+.+.+...+
T Consensus 113 ~~S~~~~~~a~~~L~a~Gi~V~~~~d~g~~PTP~vsfav~~~~ 155 (570)
T 3na5_A 113 ALSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHN 155 (570)
T ss_dssp TTHHHHHHHHHHHHHHTTCCEEEEGGGCCCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCCCEEEEeCCCCccChHHHHHHHHHhC
Confidence 34455444454 44555544332 4566777888776543
No 93
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=24.44 E-value=2e+02 Score=28.36 Aligned_cols=16 Identities=38% Similarity=0.669 Sum_probs=14.1
Q ss_pred CCCCCCEEEEEcCCCH
Q 005991 134 GLQKGVRIGLYLINRP 149 (666)
Q Consensus 134 gv~~gd~V~i~~~n~~ 149 (666)
-+++||+|+|++|.+.
T Consensus 9 ~L~~GD~I~ivaPSs~ 24 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSP 24 (336)
T ss_dssp CCCTTCEEEEECSSSC
T ss_pred CCCCCCEEEEEeCCCC
Confidence 4789999999999884
No 94
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=24.17 E-value=1.6e+02 Score=29.36 Aligned_cols=61 Identities=7% Similarity=-0.064 Sum_probs=40.2
Q ss_pred HHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCC-----CCCHHHHHHHHHhcC--ceEEEEc
Q 005991 129 GLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYD-----TLGPDAVKYVVNHAE--IEAIFCI 192 (666)
Q Consensus 129 ~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~-----~~~~~~l~~~l~~~~--~~~vi~~ 192 (666)
.|...++++||.|.+-.+....+ ..++..+|+.++.++. ....+.+...+...+ .++|+..
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 34455789999998876655443 3456778987665543 247888888774434 6777643
No 95
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=22.94 E-value=2.4e+02 Score=27.75 Aligned_cols=69 Identities=10% Similarity=-0.032 Sum_probs=49.4
Q ss_pred HHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCceEEEEccc
Q 005991 126 IGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQ 194 (666)
Q Consensus 126 lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 194 (666)
+.....+.-+++|.+..+....+---+.+.++|.++|.-++.+-|...+..-...++..++++++++..
T Consensus 74 i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 74 ITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 333333333678876666777777788888999999987766555555556677889999999999754
No 96
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=22.80 E-value=1.8e+02 Score=28.48 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=13.3
Q ss_pred CCCCCCEEEEEcCCC
Q 005991 134 GLQKGVRIGLYLINR 148 (666)
Q Consensus 134 gv~~gd~V~i~~~n~ 148 (666)
-+++||+|+|++|.+
T Consensus 8 ~L~~GD~I~ivaPSs 22 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSR 22 (327)
T ss_dssp CCCTTCEEEEECSSS
T ss_pred CCCCCCEEEEEeCCC
Confidence 478999999999985
No 97
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=22.38 E-value=2.1e+02 Score=28.65 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=14.2
Q ss_pred CCCCCCEEEEEcCCCH
Q 005991 134 GLQKGVRIGLYLINRP 149 (666)
Q Consensus 134 gv~~gd~V~i~~~n~~ 149 (666)
-+++||+|+|++|.+.
T Consensus 39 ~Lk~GD~I~ivaPSs~ 54 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAP 54 (371)
T ss_dssp CCCTTCEEEEECSSCC
T ss_pred CCCCcCEEEEEeCCCC
Confidence 5789999999999874
No 98
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=21.97 E-value=3.7e+02 Score=22.91 Aligned_cols=88 Identities=6% Similarity=-0.072 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHH---hcCceEEEEccccHHH
Q 005991 122 ARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVN---HAEIEAIFCIPQTLNT 198 (666)
Q Consensus 122 ~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~---~~~~~~vi~~~~~~~~ 198 (666)
+...+...|... ++..+.|+++.....-...-.+...|..+..++..++.++-..+++ ..+.+++|+......-
T Consensus 21 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 97 (175)
T 2rb4_A 21 KYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARG 97 (175)
T ss_dssp HHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTT
T ss_pred HHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcC
Confidence 445555555443 4568999998766555555555667888899999998876665554 4567788877533211
Q ss_pred HHHhhhcCCCceEEEEeCC
Q 005991 199 LLSFISEIPSVHLIVVVGG 217 (666)
Q Consensus 199 ~~~~~~~~~~l~~ii~~~~ 217 (666)
-.+|.+..+|.++.
T Consensus 98 -----id~~~~~~Vi~~d~ 111 (175)
T 2rb4_A 98 -----IDVKQVTIVVNFDL 111 (175)
T ss_dssp -----TCCTTEEEEEESSC
T ss_pred -----CCcccCCEEEEeCC
Confidence 14566777776553
No 99
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=20.96 E-value=2.2e+02 Score=27.98 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=14.0
Q ss_pred CCCCCCEEEEEcCCCH
Q 005991 134 GLQKGVRIGLYLINRP 149 (666)
Q Consensus 134 gv~~gd~V~i~~~n~~ 149 (666)
-+++||+|+|++|.+.
T Consensus 8 ~L~~GD~I~ivaPS~~ 23 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCS 23 (331)
T ss_dssp CCCTTCEEEEECSSSC
T ss_pred CCCCcCEEEEEeCCCC
Confidence 4789999999999875
No 100
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=20.41 E-value=3.4e+02 Score=23.18 Aligned_cols=87 Identities=3% Similarity=-0.012 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHH---hcCceEEEEccccHHH
Q 005991 122 ARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVN---HAEIEAIFCIPQTLNT 198 (666)
Q Consensus 122 ~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~---~~~~~~vi~~~~~~~~ 198 (666)
+...+...|... ++..+.|+++.....-...-.+...|..+..++..++.++-..+++ ..+.+++|+.+....-
T Consensus 18 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 94 (172)
T 1t5i_A 18 KNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 94 (172)
T ss_dssp HHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTT
T ss_pred HHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcC
Confidence 344455555554 3557888887765555555555567888899999998876655554 4567788877432211
Q ss_pred HHHhhhcCCCceEEEEeC
Q 005991 199 LLSFISEIPSVHLIVVVG 216 (666)
Q Consensus 199 ~~~~~~~~~~l~~ii~~~ 216 (666)
-.+|.+..+|.++
T Consensus 95 -----ldi~~~~~Vi~~d 107 (172)
T 1t5i_A 95 -----MDIERVNIAFNYD 107 (172)
T ss_dssp -----CCGGGCSEEEESS
T ss_pred -----cchhhCCEEEEEC
Confidence 1335556666544
No 101
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=20.15 E-value=3.9e+02 Score=22.46 Aligned_cols=87 Identities=8% Similarity=0.006 Sum_probs=54.2
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHH---hcCceEEEEccccHHHH
Q 005991 123 RKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVN---HAEIEAIFCIPQTLNTL 199 (666)
Q Consensus 123 ~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~---~~~~~~vi~~~~~~~~~ 199 (666)
...+...|... ++.++.|+++.....-...-.+...|..+..++..++.++-..+++ ..+.+++++.+....
T Consensus 23 ~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~-- 97 (163)
T 2hjv_A 23 FSLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAAR-- 97 (163)
T ss_dssp HHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTT--
T ss_pred HHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhc--
Confidence 33444444442 3457888887765544444555667888999999998876665554 456778887743221
Q ss_pred HHhhhcCCCceEEEEeCC
Q 005991 200 LSFISEIPSVHLIVVVGG 217 (666)
Q Consensus 200 ~~~~~~~~~l~~ii~~~~ 217 (666)
--.+|.+..+|.++.
T Consensus 98 ---Gld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 98 ---GIDIENISLVINYDL 112 (163)
T ss_dssp ---TCCCSCCSEEEESSC
T ss_pred ---CCchhcCCEEEEeCC
Confidence 114566777776553
Done!