Query 005993
Match_columns 666
No_of_seqs 178 out of 274
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 16:49:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 100.0 1.7E-53 3.8E-58 481.1 16.2 558 7-652 166-767 (775)
2 KOG1845 MORC family ATPases [C 100.0 7.8E-32 1.7E-36 305.8 3.8 272 29-352 1-278 (775)
3 PF13589 HATPase_c_3: Histidin 99.1 2.2E-11 4.8E-16 113.3 0.7 78 10-88 17-96 (137)
4 PRK05218 heat shock protein 90 99.0 3.1E-09 6.7E-14 121.4 15.0 65 300-367 282-347 (613)
5 PRK14083 HSP90 family protein; 98.5 1.5E-06 3.2E-11 99.6 15.2 62 25-87 60-128 (601)
6 COG0326 HtpG Molecular chapero 97.6 7.1E-05 1.5E-09 85.8 5.5 63 26-89 72-145 (623)
7 PTZ00130 heat shock protein 90 97.6 7.2E-05 1.6E-09 88.2 5.4 62 26-88 133-205 (814)
8 PRK00095 mutL DNA mismatch rep 97.4 0.0013 2.8E-08 75.9 12.7 74 10-88 37-116 (617)
9 PTZ00272 heat shock protein 83 97.4 0.00024 5.2E-09 83.1 6.0 61 27-88 71-141 (701)
10 TIGR00585 mutl DNA mismatch re 96.8 0.0015 3.2E-08 69.1 4.6 71 13-86 38-114 (312)
11 KOG0019 Molecular chaperone (H 96.2 0.0031 6.6E-08 72.3 2.9 63 25-88 99-172 (656)
12 COG1389 DNA topoisomerase VI, 96.1 0.025 5.4E-07 63.6 9.2 63 25-88 70-139 (538)
13 PF12325 TMF_TATA_bd: TATA ele 95.4 0.19 4.2E-06 47.4 11.1 89 557-649 19-117 (120)
14 PF10267 Tmemb_cc2: Predicted 95.4 0.55 1.2E-05 52.3 16.3 76 563-638 221-315 (395)
15 PRK14868 DNA topoisomerase VI 95.4 0.051 1.1E-06 64.5 8.8 62 27-88 81-148 (795)
16 COG1579 Zn-ribbon protein, pos 95.2 0.21 4.6E-06 52.1 11.8 95 558-652 56-173 (239)
17 PF07888 CALCOCO1: Calcium bin 95.2 0.22 4.8E-06 57.3 12.7 80 559-638 155-237 (546)
18 KOG0020 Endoplasmic reticulum 95.1 0.015 3.2E-07 65.6 3.0 62 26-88 140-216 (785)
19 KOG3850 Predicted membrane pro 94.9 0.66 1.4E-05 51.4 14.7 67 563-629 262-353 (455)
20 PF09726 Macoilin: Transmembra 94.7 0.1 2.2E-06 61.7 8.7 39 560-598 459-497 (697)
21 COG2433 Uncharacterized conser 94.5 0.28 6.1E-06 56.8 11.3 86 574-659 421-512 (652)
22 PRK04184 DNA topoisomerase VI 94.1 0.065 1.4E-06 61.5 5.3 63 26-88 73-141 (535)
23 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.7 1.7 3.7E-05 41.0 13.2 93 562-654 25-124 (132)
24 PF02518 HATPase_c: Histidine 93.4 0.038 8.2E-07 48.5 1.5 69 17-86 27-98 (111)
25 PF06705 SF-assemblin: SF-asse 93.0 1.2 2.6E-05 46.0 11.9 47 607-653 125-171 (247)
26 TIGR01052 top6b DNA topoisomer 92.6 0.17 3.6E-06 57.7 5.4 61 28-88 65-131 (488)
27 PF11559 ADIP: Afadin- and alp 92.0 1.5 3.2E-05 42.0 10.3 49 589-637 94-149 (151)
28 PF04156 IncA: IncA protein; 91.9 3.1 6.7E-05 40.9 12.6 63 560-622 87-149 (191)
29 PRK10884 SH3 domain-containing 91.2 2.1 4.5E-05 43.9 10.9 56 557-615 89-144 (206)
30 PF14362 DUF4407: Domain of un 90.9 1.5 3.2E-05 46.3 9.9 100 560-659 141-256 (301)
31 PF10186 Atg14: UV radiation r 90.8 4.4 9.5E-05 41.7 13.1 68 560-627 26-108 (302)
32 PRK11637 AmiB activator; Provi 90.4 3.9 8.5E-05 45.4 13.1 79 571-649 176-254 (428)
33 KOG0161 Myosin class II heavy 90.4 2.5 5.3E-05 55.3 12.8 92 560-651 1089-1183(1930)
34 PF04156 IncA: IncA protein; 89.8 6.5 0.00014 38.6 12.8 88 566-653 79-169 (191)
35 PF15254 CCDC14: Coiled-coil d 89.4 3.7 8E-05 49.2 12.2 94 563-656 389-522 (861)
36 KOG0243 Kinesin-like protein [ 89.4 4.2 9E-05 50.2 13.1 99 562-661 449-565 (1041)
37 PF12128 DUF3584: Protein of u 89.2 4 8.7E-05 51.3 13.3 98 562-659 772-886 (1201)
38 KOG0977 Nuclear envelope prote 89.0 3 6.4E-05 48.4 11.0 94 558-655 110-217 (546)
39 KOG0250 DNA repair protein RAD 88.9 3.4 7.4E-05 51.0 11.8 88 560-647 364-462 (1074)
40 COG0323 MutL DNA mismatch repa 88.5 0.47 1E-05 55.7 4.3 74 10-88 38-117 (638)
41 PF07200 Mod_r: Modifier of ru 88.3 5 0.00011 38.2 10.5 62 560-621 33-94 (150)
42 smart00387 HATPase_c Histidine 88.1 0.42 9.2E-06 39.5 2.7 67 16-83 26-95 (111)
43 COG4026 Uncharacterized protei 88.0 3.8 8.3E-05 42.9 9.9 68 569-640 129-203 (290)
44 TIGR03185 DNA_S_dndD DNA sulfu 87.9 3.9 8.4E-05 47.9 11.2 56 589-644 230-285 (650)
45 PRK04778 septation ring format 87.8 3.7 7.9E-05 47.6 10.9 79 563-645 350-428 (569)
46 COG3290 CitA Signal transducti 87.7 0.38 8.3E-06 55.2 2.9 67 15-86 450-519 (537)
47 TIGR02169 SMC_prok_A chromosom 87.4 6.2 0.00013 48.0 13.0 24 26-51 23-46 (1164)
48 PRK10604 sensor protein RstB; 87.1 0.82 1.8E-05 49.9 5.0 62 26-87 348-412 (433)
49 PF00038 Filament: Intermediat 87.1 7.4 0.00016 40.9 11.9 80 563-649 211-290 (312)
50 TIGR03185 DNA_S_dndD DNA sulfu 87.1 6.2 0.00014 46.3 12.3 87 573-659 207-293 (650)
51 KOG1962 B-cell receptor-associ 86.1 2.3 4.9E-05 44.1 7.1 45 567-611 150-194 (216)
52 PRK11637 AmiB activator; Provi 86.1 9.1 0.0002 42.6 12.4 17 563-579 49-65 (428)
53 PF15294 Leu_zip: Leucine zipp 86.0 7.9 0.00017 41.6 11.3 45 559-603 130-174 (278)
54 TIGR03752 conj_TIGR03752 integ 85.6 7.7 0.00017 44.4 11.5 85 554-652 56-140 (472)
55 PF03962 Mnd1: Mnd1 family; I 85.5 12 0.00025 37.8 11.8 62 560-621 68-135 (188)
56 PRK11100 sensory histidine kin 85.4 0.54 1.2E-05 50.2 2.4 71 15-86 388-461 (475)
57 PF10473 CENP-F_leu_zip: Leuci 85.0 16 0.00034 35.7 11.9 91 563-657 12-102 (140)
58 PRK14867 DNA topoisomerase VI 85.0 1 2.2E-05 53.2 4.6 60 28-87 73-138 (659)
59 cd00075 HATPase_c Histidine ki 84.6 1.2 2.6E-05 36.1 3.6 60 25-86 31-93 (103)
60 KOG0804 Cytoplasmic Zn-finger 84.5 13 0.00028 42.4 12.5 66 589-654 382-447 (493)
61 KOG2129 Uncharacterized conser 84.5 3.4 7.4E-05 46.5 8.0 80 561-640 136-227 (552)
62 TIGR02449 conserved hypothetic 84.4 8.8 0.00019 33.0 8.7 61 592-656 3-63 (65)
63 PF15236 CCDC66: Coiled-coil d 84.3 33 0.00072 34.2 13.9 42 604-645 88-129 (157)
64 KOG4360 Uncharacterized coiled 84.3 15 0.00032 42.6 12.9 99 562-660 203-307 (596)
65 PRK05431 seryl-tRNA synthetase 84.2 8 0.00017 43.4 11.0 97 563-662 4-106 (425)
66 KOG0612 Rho-associated, coiled 84.2 5.8 0.00013 49.6 10.4 69 584-652 503-584 (1317)
67 PRK04863 mukB cell division pr 84.1 3.2 6.8E-05 53.4 8.6 100 558-657 989-1117(1486)
68 PF06785 UPF0242: Uncharacteri 84.1 6.4 0.00014 43.3 9.7 86 563-648 101-221 (401)
69 PLN02320 seryl-tRNA synthetase 83.9 13 0.00028 43.0 12.5 97 563-662 69-170 (502)
70 PF07888 CALCOCO1: Calcium bin 83.6 15 0.00032 42.9 12.8 90 563-652 145-237 (546)
71 PF13851 GAS: Growth-arrest sp 83.5 14 0.0003 37.6 11.4 81 562-646 49-139 (201)
72 PHA02562 46 endonuclease subun 83.4 13 0.00028 42.1 12.4 22 27-50 28-49 (562)
73 PRK00409 recombination and DNA 83.4 12 0.00027 45.2 12.7 20 145-164 30-49 (782)
74 TIGR01069 mutS2 MutS2 family p 83.3 10 0.00023 45.7 12.0 14 150-163 35-48 (771)
75 PRK09470 cpxA two-component se 83.3 0.89 1.9E-05 48.7 3.0 70 17-86 373-445 (461)
76 PF09789 DUF2353: Uncharacteri 83.2 6.6 0.00014 42.9 9.4 71 585-655 22-113 (319)
77 PRK10884 SH3 domain-containing 83.2 9.1 0.0002 39.3 9.9 45 567-611 85-133 (206)
78 PF12128 DUF3584: Protein of u 82.9 11 0.00024 47.5 12.5 60 559-618 734-800 (1201)
79 smart00502 BBC B-Box C-termina 82.9 34 0.00073 30.4 13.4 81 571-651 10-98 (127)
80 KOG1962 B-cell receptor-associ 82.8 8.1 0.00018 40.2 9.4 69 569-637 135-209 (216)
81 TIGR01386 cztS_silS_copS heavy 82.8 1.1 2.4E-05 47.7 3.5 69 16-84 374-445 (457)
82 PRK04778 septation ring format 82.8 15 0.00032 42.7 12.7 103 559-661 315-441 (569)
83 PRK10780 periplasmic chaperone 82.7 15 0.00032 35.9 10.8 81 563-643 45-131 (165)
84 PF08317 Spc7: Spc7 kinetochor 82.4 14 0.0003 40.0 11.5 41 616-656 225-265 (325)
85 PF04949 Transcrip_act: Transc 82.1 14 0.0003 36.6 10.2 72 569-644 85-157 (159)
86 PF02403 Seryl_tRNA_N: Seryl-t 82.0 14 0.00031 33.3 9.8 98 563-662 4-107 (108)
87 PRK09303 adaptive-response sen 81.8 2.1 4.6E-05 46.2 5.1 60 26-87 304-366 (380)
88 KOG1853 LIS1-interacting prote 81.8 17 0.00037 38.9 11.4 63 594-656 57-119 (333)
89 PF04111 APG6: Autophagy prote 81.8 22 0.00047 38.6 12.7 62 591-656 73-134 (314)
90 PF13851 GAS: Growth-arrest sp 81.0 34 0.00073 34.9 13.1 50 562-611 28-77 (201)
91 KOG0971 Microtubule-associated 80.9 8.5 0.00019 47.0 9.8 74 563-654 370-443 (1243)
92 PRK02224 chromosome segregatio 80.8 19 0.00041 43.4 13.0 33 589-621 213-245 (880)
93 PF07334 IFP_35_N: Interferon- 80.7 1.6 3.4E-05 38.6 3.0 25 562-586 1-25 (76)
94 PF12777 MT: Microtubule-bindi 80.5 6.1 0.00013 42.9 8.1 46 589-638 263-308 (344)
95 KOG0971 Microtubule-associated 80.3 5.6 0.00012 48.5 8.1 97 547-645 950-1057(1243)
96 PF12718 Tropomyosin_1: Tropom 80.2 38 0.00081 32.9 12.5 50 563-612 16-65 (143)
97 PRK09039 hypothetical protein; 80.0 15 0.00032 40.3 10.8 45 574-618 115-159 (343)
98 PRK10549 signal transduction h 80.0 1.1 2.3E-05 48.4 2.1 64 24-87 381-447 (466)
99 PF10482 CtIP_N: Tumour-suppre 79.9 10 0.00023 35.9 8.2 74 564-637 45-119 (120)
100 TIGR00606 rad50 rad50. This fa 79.9 15 0.00031 46.8 12.2 60 589-648 895-954 (1311)
101 PF07989 Microtub_assoc: Micro 79.8 9.6 0.00021 33.3 7.5 26 560-585 6-31 (75)
102 PRK09343 prefoldin subunit bet 79.7 41 0.00088 31.7 12.2 83 570-652 9-116 (121)
103 PF14662 CCDC155: Coiled-coil 79.7 29 0.00063 35.7 11.9 62 590-651 75-139 (193)
104 smart00787 Spc7 Spc7 kinetocho 79.6 32 0.00069 37.5 13.1 41 616-656 220-260 (312)
105 PF08317 Spc7: Spc7 kinetochor 79.6 33 0.00072 37.1 13.2 12 225-236 14-25 (325)
106 TIGR02168 SMC_prok_B chromosom 79.5 21 0.00047 43.3 13.0 28 23-52 20-47 (1179)
107 PF13256 DUF4047: Domain of un 79.2 27 0.00059 33.5 10.7 95 554-654 23-119 (125)
108 COG1196 Smc Chromosome segrega 79.2 21 0.00045 44.9 13.1 62 593-654 853-917 (1163)
109 PF05911 DUF869: Plant protein 79.2 6.7 0.00014 47.4 8.5 97 560-656 630-761 (769)
110 KOG0250 DNA repair protein RAD 79.0 22 0.00047 44.4 12.6 56 589-644 295-353 (1074)
111 COG1196 Smc Chromosome segrega 79.0 20 0.00044 45.1 12.9 92 565-656 401-495 (1163)
112 PF00769 ERM: Ezrin/radixin/mo 78.9 26 0.00055 36.8 11.7 39 613-651 88-126 (246)
113 PF04849 HAP1_N: HAP1 N-termin 78.8 30 0.00066 37.8 12.5 68 589-656 234-304 (306)
114 PF15619 Lebercilin: Ciliary p 78.5 39 0.00085 34.4 12.6 21 562-582 62-82 (194)
115 PRK09039 hypothetical protein; 78.5 27 0.00059 38.3 12.3 59 563-621 48-106 (343)
116 smart00787 Spc7 Spc7 kinetocho 78.4 23 0.00049 38.6 11.5 13 645-657 274-286 (312)
117 COG1579 Zn-ribbon protein, pos 78.4 25 0.00055 37.1 11.4 62 591-655 61-123 (239)
118 PRK02224 chromosome segregatio 78.3 13 0.00028 44.7 10.6 40 569-608 259-298 (880)
119 PRK00106 hypothetical protein; 78.2 33 0.00072 40.1 13.3 16 632-647 140-155 (535)
120 PF05911 DUF869: Plant protein 77.7 25 0.00054 42.8 12.5 92 563-654 58-160 (769)
121 TIGR02168 SMC_prok_B chromosom 77.6 27 0.0006 42.4 13.2 8 64-71 44-51 (1179)
122 PF10186 Atg14: UV radiation r 77.6 41 0.00089 34.6 12.7 42 565-606 67-108 (302)
123 PRK10364 sensor protein ZraS; 77.3 2.1 4.6E-05 46.6 3.5 65 16-86 369-436 (457)
124 KOG4673 Transcription factor T 77.3 32 0.0007 41.3 12.8 85 554-642 338-444 (961)
125 KOG1029 Endocytic adaptor prot 77.1 14 0.00031 44.6 10.0 40 607-647 424-463 (1118)
126 PF12718 Tropomyosin_1: Tropom 77.1 53 0.0012 31.8 12.5 15 594-608 54-68 (143)
127 COG4345 Uncharacterized protei 76.7 11 0.00023 38.0 7.6 51 594-655 123-173 (181)
128 PF09755 DUF2046: Uncharacteri 76.0 65 0.0014 35.4 13.9 52 559-617 25-98 (310)
129 PRK05559 DNA topoisomerase IV 76.0 2.3 4.9E-05 50.1 3.4 71 12-88 58-140 (631)
130 PRK09467 envZ osmolarity senso 75.8 2.3 4.9E-05 45.6 3.1 60 25-86 359-421 (435)
131 PRK11006 phoR phosphate regulo 75.6 1.8 3.8E-05 47.0 2.2 62 25-86 347-411 (430)
132 PF07200 Mod_r: Modifier of ru 75.6 19 0.00041 34.3 8.9 93 563-655 43-137 (150)
133 PF05622 HOOK: HOOK protein; 75.2 0.93 2E-05 53.6 0.0 78 563-640 241-327 (713)
134 KOG0239 Kinesin (KAR3 subfamil 75.1 17 0.00037 43.4 10.2 89 560-653 226-318 (670)
135 PF10473 CENP-F_leu_zip: Leuci 74.9 44 0.00096 32.7 11.3 84 563-654 54-138 (140)
136 PF08172 CASP_C: CASP C termin 74.7 13 0.00029 39.1 8.3 84 571-654 2-119 (248)
137 PF09789 DUF2353: Uncharacteri 74.7 30 0.00064 38.0 11.1 88 562-649 31-154 (319)
138 PRK15053 dpiB sensor histidine 74.5 2.5 5.5E-05 46.9 3.2 60 24-86 465-527 (545)
139 PF08614 ATG16: Autophagy prot 74.4 32 0.00068 34.5 10.6 27 589-615 130-156 (194)
140 PF06705 SF-assemblin: SF-asse 74.4 53 0.0012 34.0 12.5 81 570-650 36-139 (247)
141 PF06785 UPF0242: Uncharacteri 74.2 36 0.00077 37.8 11.4 63 589-651 123-185 (401)
142 PRK03918 chromosome segregatio 74.2 40 0.00086 40.5 13.2 24 25-50 22-45 (880)
143 KOG0976 Rho/Rac1-interacting s 74.1 34 0.00073 41.8 12.0 66 560-625 98-163 (1265)
144 PF06005 DUF904: Protein of un 74.0 52 0.0011 28.7 10.4 32 621-652 39-70 (72)
145 PLN02678 seryl-tRNA synthetase 73.9 33 0.00072 39.2 11.7 98 563-662 4-111 (448)
146 PF15619 Lebercilin: Ciliary p 73.7 67 0.0015 32.8 12.7 67 589-655 82-152 (194)
147 PF09421 FRQ: Frequency clock 73.6 16 0.00036 45.0 9.7 45 552-598 128-172 (989)
148 PF03938 OmpH: Outer membrane 73.3 63 0.0014 30.6 11.9 27 562-588 37-63 (158)
149 PRK11360 sensory histidine kin 72.6 2.7 5.8E-05 45.8 2.8 64 17-86 522-589 (607)
150 TIGR02966 phoR_proteo phosphat 72.6 2.5 5.5E-05 42.4 2.4 61 26-86 260-323 (333)
151 PF13118 DUF3972: Protein of u 72.4 4.6 0.0001 38.7 3.9 39 563-601 87-125 (126)
152 KOG0804 Cytoplasmic Zn-finger 72.4 37 0.00081 38.9 11.4 37 573-609 387-423 (493)
153 KOG0963 Transcription factor/C 72.3 30 0.00066 40.9 11.0 93 560-655 248-344 (629)
154 PF09755 DUF2046: Uncharacteri 72.1 24 0.00053 38.5 9.6 31 608-638 172-202 (310)
155 PRK09835 sensor kinase CusS; P 71.8 4.9 0.00011 43.5 4.5 69 17-85 397-468 (482)
156 PRK10755 sensor protein BasS/P 71.7 2.7 5.9E-05 44.0 2.5 67 17-87 269-338 (356)
157 KOG1979 DNA mismatch repair pr 71.4 5.2 0.00011 46.8 4.7 65 24-88 53-121 (694)
158 PF10168 Nup88: Nuclear pore c 71.1 50 0.0011 39.9 12.8 66 589-654 586-665 (717)
159 PF05529 Bap31: B-cell recepto 70.6 19 0.00042 35.7 8.1 60 594-656 130-189 (192)
160 TIGR01055 parE_Gneg DNA topois 70.6 4.3 9.4E-05 47.8 4.0 71 12-88 51-133 (625)
161 PF00038 Filament: Intermediat 70.5 83 0.0018 33.2 13.2 66 590-655 217-289 (312)
162 COG0419 SbcC ATPase involved i 70.4 45 0.00098 40.9 12.6 42 580-621 313-354 (908)
163 PRK03918 chromosome segregatio 70.3 63 0.0014 38.8 13.6 35 622-656 399-433 (880)
164 PF12329 TMF_DNA_bd: TATA elem 70.1 25 0.00054 30.6 7.6 40 599-638 32-71 (74)
165 COG0642 BaeS Signal transducti 69.8 4.7 0.0001 39.5 3.5 40 27-70 259-298 (336)
166 PRK10547 chemotaxis protein Ch 69.5 7 0.00015 46.5 5.4 61 25-86 427-511 (670)
167 PF04111 APG6: Autophagy prote 69.4 44 0.00096 36.3 11.0 21 563-583 52-72 (314)
168 TIGR01843 type_I_hlyD type I s 69.3 70 0.0015 34.5 12.6 17 638-654 249-265 (423)
169 KOG0982 Centrosomal protein Nu 69.0 65 0.0014 36.9 12.3 75 564-638 246-349 (502)
170 PF00261 Tropomyosin: Tropomyo 69.0 97 0.0021 32.0 13.0 67 589-655 134-203 (237)
171 smart00433 TOP2c Topoisomerase 68.8 4.4 9.5E-05 47.4 3.5 69 12-88 22-104 (594)
172 PF06160 EzrA: Septation ring 68.5 33 0.00072 39.9 10.5 81 560-644 312-423 (560)
173 TIGR02894 DNA_bind_RsfA transc 68.5 24 0.00052 35.3 8.0 35 589-623 118-152 (161)
174 PRK11073 glnL nitrogen regulat 68.5 7.8 0.00017 40.2 5.0 53 28-86 281-336 (348)
175 PF03962 Mnd1: Mnd1 family; I 68.4 30 0.00066 34.9 8.9 25 621-645 103-127 (188)
176 PF05384 DegS: Sensor protein 68.4 1.3E+02 0.0028 30.1 13.0 49 559-607 18-66 (159)
177 PF00261 Tropomyosin: Tropomyo 68.4 96 0.0021 32.1 12.8 86 563-652 143-235 (237)
178 TIGR00414 serS seryl-tRNA synt 68.4 36 0.00077 38.3 10.4 98 563-662 4-109 (418)
179 PRK09174 F0F1 ATP synthase sub 67.4 94 0.002 31.8 12.3 47 571-617 80-126 (204)
180 PF04012 PspA_IM30: PspA/IM30 67.4 88 0.0019 31.6 12.1 89 564-652 26-136 (221)
181 PF12329 TMF_DNA_bd: TATA elem 67.3 54 0.0012 28.5 9.1 58 562-619 13-70 (74)
182 TIGR02938 nifL_nitrog nitrogen 67.3 5.6 0.00012 42.4 3.7 66 17-85 413-481 (494)
183 COG0172 SerS Seryl-tRNA synthe 67.3 45 0.00098 38.0 10.8 90 562-654 3-101 (429)
184 PF10174 Cast: RIM-binding pro 67.0 69 0.0015 39.2 12.9 94 562-655 309-405 (775)
185 KOG3990 Uncharacterized conser 67.0 69 0.0015 34.4 11.3 23 562-584 226-248 (305)
186 PRK01156 chromosome segregatio 66.7 54 0.0012 39.9 12.1 25 24-50 21-45 (895)
187 PF00435 Spectrin: Spectrin re 66.7 75 0.0016 26.5 11.9 79 565-650 5-95 (105)
188 PF01025 GrpE: GrpE; InterPro 65.8 38 0.00083 32.5 8.8 87 562-651 19-108 (165)
189 TIGR01069 mutS2 MutS2 family p 65.6 60 0.0013 39.5 12.1 13 572-584 508-520 (771)
190 TIGR03495 phage_LysB phage lys 65.4 77 0.0017 30.9 10.6 78 566-654 17-94 (135)
191 TIGR02231 conserved hypothetic 65.2 56 0.0012 37.4 11.3 44 613-656 130-173 (525)
192 PF05335 DUF745: Protein of un 65.2 1.6E+02 0.0036 30.1 13.4 95 560-654 66-163 (188)
193 PF07798 DUF1640: Protein of u 65.1 1.2E+02 0.0026 30.1 12.2 59 594-652 85-144 (177)
194 PRK07353 F0F1 ATP synthase sub 65.0 1.2E+02 0.0027 28.3 11.8 47 573-619 34-80 (140)
195 PRK10476 multidrug resistance 64.6 66 0.0014 34.6 11.1 62 553-614 78-139 (346)
196 TIGR00606 rad50 rad50. This fa 64.5 66 0.0014 41.1 12.8 35 16-55 21-58 (1311)
197 KOG0963 Transcription factor/C 64.5 67 0.0015 38.2 11.7 80 568-647 121-208 (629)
198 PF05701 WEMBL: Weak chloropla 64.4 69 0.0015 37.1 11.9 65 591-655 283-350 (522)
199 PF13870 DUF4201: Domain of un 64.2 65 0.0014 31.7 10.2 67 563-629 44-124 (177)
200 PRK11086 sensory histidine kin 64.2 6.7 0.00014 43.1 3.7 64 17-86 457-523 (542)
201 TIGR03785 marine_sort_HK prote 64.1 5.5 0.00012 47.1 3.2 70 17-86 619-691 (703)
202 PF08614 ATG16: Autophagy prot 63.8 97 0.0021 31.1 11.5 46 605-650 135-180 (194)
203 KOG4403 Cell surface glycoprot 63.8 44 0.00096 38.2 9.8 17 628-644 309-325 (575)
204 PF00769 ERM: Ezrin/radixin/mo 63.2 83 0.0018 33.1 11.2 87 567-653 4-100 (246)
205 COG4585 Signal transduction hi 63.1 2.6 5.6E-05 45.2 0.2 59 12-86 295-353 (365)
206 KOG1899 LAR transmembrane tyro 63.1 41 0.00089 40.1 9.6 67 571-648 149-215 (861)
207 CHL00118 atpG ATP synthase CF0 63.0 1.5E+02 0.0033 28.7 12.4 50 573-622 51-100 (156)
208 TIGR01059 gyrB DNA gyrase, B s 62.9 7 0.00015 46.2 3.7 70 12-88 51-133 (654)
209 PRK13729 conjugal transfer pil 62.6 24 0.00053 40.6 7.7 25 630-654 99-123 (475)
210 PF10211 Ax_dynein_light: Axon 62.4 1.3E+02 0.0027 30.5 12.0 24 560-583 83-106 (189)
211 PRK07352 F0F1 ATP synthase sub 62.3 1.3E+02 0.0028 29.6 11.9 47 573-619 48-94 (174)
212 PF01920 Prefoldin_2: Prefoldi 62.2 99 0.0021 27.2 10.1 42 612-653 60-101 (106)
213 PF05557 MAD: Mitotic checkpoi 61.8 15 0.00032 43.9 6.1 60 562-621 567-631 (722)
214 COG3850 NarQ Signal transducti 61.8 4.6 0.0001 46.8 1.9 61 10-88 497-558 (574)
215 PRK05759 F0F1 ATP synthase sub 61.4 1.5E+02 0.0032 28.2 11.8 44 575-618 35-78 (156)
216 PF06637 PV-1: PV-1 protein (P 61.4 93 0.002 35.2 11.5 88 559-651 290-379 (442)
217 PF04871 Uso1_p115_C: Uso1 / p 61.4 67 0.0014 31.0 9.4 17 606-622 80-96 (136)
218 PRK10337 sensor protein QseC; 61.4 8.4 0.00018 41.6 3.7 55 29-86 382-439 (449)
219 PRK14473 F0F1 ATP synthase sub 61.3 1.6E+02 0.0035 28.5 12.4 43 575-617 39-81 (164)
220 PRK14939 gyrB DNA gyrase subun 61.1 8.6 0.00019 46.4 4.1 70 12-88 58-140 (756)
221 PF02646 RmuC: RmuC family; I 61.0 40 0.00086 36.3 8.7 83 558-640 3-85 (304)
222 PRK12705 hypothetical protein; 60.9 43 0.00093 38.9 9.4 48 563-610 72-119 (508)
223 PF09787 Golgin_A5: Golgin sub 60.8 92 0.002 35.9 12.0 92 563-655 276-382 (511)
224 PRK14143 heat shock protein Gr 60.7 57 0.0012 34.5 9.5 21 563-583 76-96 (238)
225 KOG0933 Structural maintenance 60.7 61 0.0013 40.6 10.8 35 614-648 857-891 (1174)
226 PF11544 Spc42p: Spindle pole 60.0 30 0.00064 30.8 6.1 42 566-611 3-44 (76)
227 PF15254 CCDC14: Coiled-coil d 60.0 74 0.0016 38.8 11.1 85 559-651 460-555 (861)
228 PRK01156 chromosome segregatio 59.9 74 0.0016 38.7 11.6 29 171-203 5-33 (895)
229 PRK11107 hybrid sensory histid 59.8 11 0.00025 44.5 4.8 68 29-98 446-516 (919)
230 PF10168 Nup88: Nuclear pore c 59.7 61 0.0013 39.2 10.7 14 631-644 649-662 (717)
231 TIGR00998 8a0101 efflux pump m 59.6 1E+02 0.0022 32.5 11.3 68 552-619 71-138 (334)
232 KOG0161 Myosin class II heavy 59.6 96 0.0021 41.5 13.0 21 325-345 444-465 (1930)
233 TIGR01843 type_I_hlyD type I s 59.1 1.5E+02 0.0032 32.1 12.6 25 629-653 247-271 (423)
234 PF10153 DUF2361: Uncharacteri 59.1 56 0.0012 30.9 8.2 63 591-655 30-95 (114)
235 PF14282 FlxA: FlxA-like prote 58.9 29 0.00062 32.0 6.2 51 562-612 20-74 (106)
236 PF11932 DUF3450: Protein of u 58.8 1.9E+02 0.0042 30.0 13.0 44 609-652 72-115 (251)
237 PF09325 Vps5: Vps5 C terminal 58.8 80 0.0017 31.6 9.9 70 569-638 143-213 (236)
238 PRK10361 DNA recombination pro 58.5 89 0.0019 36.2 11.2 62 575-636 60-121 (475)
239 PRK05644 gyrB DNA gyrase subun 58.5 10 0.00022 45.0 4.0 58 29-88 70-140 (638)
240 PF14182 YgaB: YgaB-like prote 58.4 51 0.0011 29.5 7.3 32 573-604 6-39 (79)
241 TIGR02977 phageshock_pspA phag 58.4 89 0.0019 32.0 10.3 86 570-655 33-126 (219)
242 PF11577 NEMO: NF-kappa-B esse 58.4 30 0.00065 30.0 5.8 18 563-580 8-25 (68)
243 TIGR03007 pepcterm_ChnLen poly 58.0 98 0.0021 34.9 11.5 27 562-588 162-188 (498)
244 PF10174 Cast: RIM-binding pro 58.0 93 0.002 38.1 11.8 48 600-647 433-484 (775)
245 PRK06231 F0F1 ATP synthase sub 57.9 1.5E+02 0.0033 30.2 11.9 51 574-624 78-128 (205)
246 PF06160 EzrA: Septation ring 57.8 1.4E+02 0.0031 34.9 13.0 6 135-140 29-34 (560)
247 PRK04863 mukB cell division pr 57.8 1.1E+02 0.0024 40.0 13.1 24 561-584 307-330 (1486)
248 TIGR03017 EpsF chain length de 57.7 74 0.0016 35.2 10.3 26 563-588 173-198 (444)
249 smart00502 BBC B-Box C-termina 57.6 1.4E+02 0.003 26.4 11.9 24 605-628 63-86 (127)
250 PF09728 Taxilin: Myosin-like 57.5 1.2E+02 0.0026 33.1 11.5 69 583-651 54-126 (309)
251 PF07798 DUF1640: Protein of u 57.5 93 0.002 30.9 10.0 21 619-639 129-149 (177)
252 PF07795 DUF1635: Protein of u 57.3 62 0.0013 33.8 8.9 58 598-655 3-60 (214)
253 TIGR02916 PEP_his_kin putative 57.2 7.3 0.00016 45.5 2.6 64 17-86 601-668 (679)
254 KOG4552 Vitamin-D-receptor int 56.9 98 0.0021 32.5 10.1 44 613-656 73-123 (272)
255 TIGR03007 pepcterm_ChnLen poly 56.7 1.1E+02 0.0024 34.4 11.7 62 594-655 315-382 (498)
256 PRK14153 heat shock protein Gr 56.6 84 0.0018 32.3 9.7 13 596-608 40-52 (194)
257 KOG2002 TPR-containing nuclear 56.5 71 0.0015 39.8 10.5 56 585-640 809-873 (1018)
258 PF09731 Mitofilin: Mitochondr 56.3 1.7E+02 0.0037 33.9 13.3 23 617-639 367-389 (582)
259 PF15188 CCDC-167: Coiled-coil 56.3 22 0.00048 32.1 4.8 53 563-615 7-62 (85)
260 PF07106 TBPIP: Tat binding pr 56.2 88 0.0019 30.5 9.5 20 563-582 74-93 (169)
261 PF09787 Golgin_A5: Golgin sub 56.2 3.5E+02 0.0076 31.3 15.7 76 563-638 118-204 (511)
262 PF07106 TBPIP: Tat binding pr 56.0 52 0.0011 32.1 7.8 49 562-610 80-137 (169)
263 PF10146 zf-C4H2: Zinc finger- 56.0 1.6E+02 0.0035 30.9 11.8 11 620-630 73-83 (230)
264 PRK13837 two-component VirA-li 55.8 12 0.00026 44.8 4.1 55 26-86 606-663 (828)
265 COG2433 Uncharacterized conser 55.8 49 0.0011 39.3 8.7 25 560-584 428-452 (652)
266 KOG3433 Protein involved in me 55.7 1.2E+02 0.0026 31.4 10.3 9 634-642 157-165 (203)
267 PRK13455 F0F1 ATP synthase sub 55.7 1.9E+02 0.0041 28.7 11.8 48 572-619 55-102 (184)
268 TIGR03321 alt_F1F0_F0_B altern 55.7 1.9E+02 0.0042 30.0 12.4 44 574-617 35-78 (246)
269 TIGR01554 major_cap_HK97 phage 55.5 43 0.00093 36.6 8.0 52 564-615 2-53 (378)
270 PF13870 DUF4201: Domain of un 55.3 51 0.0011 32.4 7.7 22 624-645 155-176 (177)
271 PF05266 DUF724: Protein of un 55.1 1.9E+02 0.004 29.6 11.8 55 557-612 93-147 (190)
272 PF04849 HAP1_N: HAP1 N-termin 54.9 63 0.0014 35.4 8.9 39 589-627 248-286 (306)
273 KOG0996 Structural maintenance 54.9 91 0.002 39.7 11.1 30 24-55 106-137 (1293)
274 PRK15347 two component system 54.7 10 0.00022 45.0 3.2 49 17-69 534-582 (921)
275 PF12072 DUF3552: Domain of un 54.5 2.5E+02 0.0054 28.5 13.3 8 576-583 86-93 (201)
276 COG5124 Protein predicted to b 54.4 56 0.0012 33.5 7.8 66 584-656 77-148 (209)
277 TIGR02473 flagell_FliJ flagell 54.3 1.8E+02 0.0039 26.8 12.2 48 559-606 4-51 (141)
278 PRK08475 F0F1 ATP synthase sub 54.2 2.2E+02 0.0047 28.1 11.9 48 573-620 51-98 (167)
279 COG4026 Uncharacterized protei 54.2 46 0.001 35.2 7.4 12 627-638 176-187 (290)
280 TIGR02449 conserved hypothetic 54.1 32 0.00069 29.7 5.2 40 563-609 16-55 (65)
281 PRK13461 F0F1 ATP synthase sub 53.8 2.1E+02 0.0046 27.5 11.9 44 574-617 35-78 (159)
282 TIGR02680 conserved hypothetic 53.8 1.5E+02 0.0032 38.4 13.3 31 23-53 21-53 (1353)
283 KOG1978 DNA mismatch repair pr 53.5 7.9 0.00017 45.9 2.0 70 12-87 35-113 (672)
284 PF13874 Nup54: Nucleoporin co 53.4 33 0.00071 32.9 5.9 21 625-645 104-124 (141)
285 PF04859 DUF641: Plant protein 53.2 38 0.00082 32.8 6.2 78 562-647 50-127 (131)
286 PF12072 DUF3552: Domain of un 53.0 2.6E+02 0.0057 28.3 13.1 14 602-615 95-108 (201)
287 PF01025 GrpE: GrpE; InterPro 52.9 27 0.00057 33.6 5.2 16 563-578 13-28 (165)
288 PRK10815 sensor protein PhoQ; 52.8 16 0.00035 41.1 4.3 57 26-86 407-466 (485)
289 KOG3433 Protein involved in me 52.8 1.3E+02 0.0028 31.0 10.1 57 554-610 39-102 (203)
290 PF05667 DUF812: Protein of un 52.8 1.6E+02 0.0034 35.1 12.4 29 625-653 444-472 (594)
291 COG3074 Uncharacterized protei 52.7 79 0.0017 28.0 7.4 28 589-616 32-59 (79)
292 COG4942 Membrane-bound metallo 52.6 1.1E+02 0.0024 34.9 10.6 66 584-649 43-108 (420)
293 PRK13557 histidine kinase; Pro 52.3 20 0.00042 39.2 4.7 56 27-86 324-382 (540)
294 PF12777 MT: Microtubule-bindi 52.1 28 0.0006 38.0 5.8 72 563-645 216-287 (344)
295 CHL00019 atpF ATP synthase CF0 51.9 2.4E+02 0.0051 28.0 11.9 46 573-618 53-98 (184)
296 PF04012 PspA_IM30: PspA/IM30 51.9 2.7E+02 0.0058 28.1 13.1 29 589-617 91-119 (221)
297 COG3883 Uncharacterized protei 51.8 1.5E+02 0.0033 31.9 11.0 70 562-635 149-218 (265)
298 PF06818 Fez1: Fez1; InterPro 51.7 1.7E+02 0.0036 30.5 10.8 38 617-654 69-106 (202)
299 PF05667 DUF812: Protein of un 51.6 1.6E+02 0.0034 35.1 12.1 19 635-653 447-465 (594)
300 COG1340 Uncharacterized archae 51.4 2.3E+02 0.005 31.1 12.3 53 589-652 41-93 (294)
301 KOG1760 Molecular chaperone Pr 51.3 1.4E+02 0.003 29.0 9.5 77 576-652 27-119 (131)
302 KOG0243 Kinesin-like protein [ 51.1 1.8E+02 0.0039 36.8 12.8 82 560-641 403-500 (1041)
303 PF08687 ASD2: Apx/Shroom doma 50.7 2.4E+02 0.0052 30.5 12.2 50 571-620 157-218 (264)
304 PF09728 Taxilin: Myosin-like 50.5 2.6E+02 0.0057 30.5 12.8 38 564-601 131-174 (309)
305 PF06657 Cep57_MT_bd: Centroso 50.4 38 0.00083 29.9 5.3 58 558-615 14-76 (79)
306 PRK07720 fliJ flagellar biosyn 50.3 2.3E+02 0.005 26.9 12.5 50 558-607 6-55 (146)
307 PRK13411 molecular chaperone D 50.2 1.1E+02 0.0024 36.3 10.7 64 589-652 529-600 (653)
308 PF02841 GBP_C: Guanylate-bind 50.2 1.7E+02 0.0037 31.2 11.2 19 589-607 236-254 (297)
309 COG5185 HEC1 Protein involved 50.1 66 0.0014 37.3 8.3 55 585-639 486-544 (622)
310 KOG3119 Basic region leucine z 50.0 57 0.0012 34.7 7.6 43 571-616 193-235 (269)
311 COG1730 GIM5 Predicted prefold 50.0 2.7E+02 0.0058 27.5 11.9 84 571-654 9-134 (145)
312 PF13747 DUF4164: Domain of un 49.9 2E+02 0.0043 26.0 9.9 17 633-649 72-88 (89)
313 PF13863 DUF4200: Domain of un 49.9 2.1E+02 0.0045 26.2 12.7 36 621-656 74-109 (126)
314 COG4477 EzrA Negative regulato 49.9 1.1E+02 0.0025 35.9 10.3 35 593-627 379-417 (570)
315 COG3883 Uncharacterized protei 49.8 3.1E+02 0.0066 29.7 12.8 26 559-584 78-103 (265)
316 PRK14158 heat shock protein Gr 49.8 1.2E+02 0.0025 31.3 9.4 86 563-651 49-136 (194)
317 KOG4403 Cell surface glycoprot 49.7 2E+02 0.0044 33.2 11.9 93 563-655 254-374 (575)
318 cd07643 I-BAR_IMD_MIM Inverse 49.3 3.3E+02 0.0071 29.0 12.7 91 562-654 98-223 (231)
319 PRK11519 tyrosine kinase; Prov 49.3 84 0.0018 37.6 9.6 29 563-591 269-297 (719)
320 PRK14141 heat shock protein Gr 49.3 2.1E+02 0.0045 29.9 11.2 92 557-651 34-134 (209)
321 PRK04069 serine-protein kinase 49.3 8.9 0.00019 36.9 1.4 26 24-49 74-99 (161)
322 PHA02675 ORF104 fusion protein 49.2 65 0.0014 29.3 6.5 43 571-613 33-75 (90)
323 PRK11466 hybrid sensory histid 49.1 19 0.00041 43.0 4.3 41 25-69 590-630 (914)
324 PF09177 Syntaxin-6_N: Syntaxi 49.0 68 0.0015 28.7 6.9 54 584-638 40-94 (97)
325 PHA00728 hypothetical protein 48.9 14 0.0003 35.6 2.5 26 561-586 5-30 (151)
326 PF15070 GOLGA2L5: Putative go 48.7 1.7E+02 0.0038 34.9 11.9 87 564-650 111-231 (617)
327 KOG0996 Structural maintenance 48.5 1.3E+02 0.0029 38.3 11.1 17 301-317 217-233 (1293)
328 COG1340 Uncharacterized archae 48.4 2.8E+02 0.0061 30.4 12.4 16 594-609 67-82 (294)
329 CHL00094 dnaK heat shock prote 48.3 1.2E+02 0.0026 35.6 10.6 83 569-651 506-597 (621)
330 cd07627 BAR_Vps5p The Bin/Amph 48.1 1.2E+02 0.0027 30.8 9.4 41 589-629 143-183 (216)
331 PRK13169 DNA replication intia 48.0 83 0.0018 29.7 7.4 48 589-640 8-55 (110)
332 PRK06568 F0F1 ATP synthase sub 48.0 2.9E+02 0.0063 27.4 11.8 45 573-617 33-77 (154)
333 TIGR03017 EpsF chain length de 47.9 2.2E+02 0.0048 31.5 12.1 28 627-654 341-368 (444)
334 PF06156 DUF972: Protein of un 47.9 92 0.002 29.1 7.7 50 589-642 8-57 (107)
335 PF14712 Snapin_Pallidin: Snap 47.9 1.8E+02 0.0038 25.5 9.2 31 595-625 13-43 (92)
336 KOG4674 Uncharacterized conser 47.7 1.8E+02 0.0039 38.9 12.5 66 589-654 798-863 (1822)
337 PRK13453 F0F1 ATP synthase sub 47.6 2.9E+02 0.0063 27.3 11.8 29 589-617 63-91 (173)
338 PRK14155 heat shock protein Gr 47.4 2.5E+02 0.0054 29.2 11.5 93 557-652 16-114 (208)
339 PRK14140 heat shock protein Gr 47.4 2.9E+02 0.0064 28.3 11.8 90 561-652 37-135 (191)
340 PF05701 WEMBL: Weak chloropla 46.1 2.1E+02 0.0045 33.3 11.8 80 562-656 173-263 (522)
341 KOG1029 Endocytic adaptor prot 46.1 2E+02 0.0044 35.5 11.7 9 337-345 186-194 (1118)
342 KOG0241 Kinesin-like protein [ 45.9 35 0.00076 42.4 5.7 44 562-611 365-408 (1714)
343 PF14197 Cep57_CLD_2: Centroso 45.9 1.7E+02 0.0036 25.4 8.4 21 635-655 40-60 (69)
344 COG4477 EzrA Negative regulato 45.7 1.5E+02 0.0032 35.0 10.4 88 562-653 317-407 (570)
345 PRK14474 F0F1 ATP synthase sub 45.6 3.4E+02 0.0075 28.6 12.4 30 589-618 50-79 (250)
346 PF14915 CCDC144C: CCDC144C pr 45.4 3.4E+02 0.0074 29.9 12.4 48 611-658 254-301 (305)
347 PF10779 XhlA: Haemolysin XhlA 45.2 94 0.002 26.5 6.8 39 572-610 3-41 (71)
348 TIGR01005 eps_transp_fam exopo 45.0 97 0.0021 37.0 9.3 37 627-663 375-414 (754)
349 PF05377 FlaC_arch: Flagella a 45.0 20 0.00043 30.1 2.5 29 558-586 11-39 (55)
350 PRK14141 heat shock protein Gr 45.0 1.3E+02 0.0028 31.3 8.9 42 594-635 36-77 (209)
351 PRK10361 DNA recombination pro 45.0 3.1E+02 0.0068 31.9 12.8 38 589-626 60-97 (475)
352 KOG2701 Uncharacterized conser 44.8 2.5E+02 0.0053 33.6 12.0 82 580-661 311-400 (608)
353 PRK14472 F0F1 ATP synthase sub 44.7 3.2E+02 0.0069 26.9 12.3 45 574-618 48-92 (175)
354 TIGR02338 gimC_beta prefoldin, 44.3 2.4E+02 0.0052 25.8 9.8 33 616-648 76-108 (110)
355 PRK11546 zraP zinc resistance 44.2 88 0.0019 30.8 7.2 64 560-630 53-116 (143)
356 PF09731 Mitofilin: Mitochondr 44.2 3.3E+02 0.0071 31.6 13.1 32 623-654 366-397 (582)
357 PRK14154 heat shock protein Gr 43.6 1.5E+02 0.0033 30.9 9.2 58 560-620 58-116 (208)
358 PF07246 Phlebovirus_NSM: Phle 43.6 1.9E+02 0.0041 31.3 10.1 17 365-381 42-58 (264)
359 PF06810 Phage_GP20: Phage min 43.4 1.5E+02 0.0033 29.1 8.9 18 593-610 31-48 (155)
360 PF05837 CENP-H: Centromere pr 43.3 2.7E+02 0.0059 25.7 10.4 45 562-606 4-48 (106)
361 TIGR00219 mreC rod shape-deter 43.2 37 0.0008 36.3 5.0 23 563-585 68-90 (283)
362 PRK09841 cryptic autophosphory 43.1 2.8E+02 0.0061 33.4 12.7 54 563-616 269-331 (726)
363 PF08657 DASH_Spc34: DASH comp 43.1 83 0.0018 33.6 7.5 44 571-614 176-219 (259)
364 KOG0993 Rab5 GTPase effector R 43.0 90 0.0019 35.7 7.9 46 566-611 119-170 (542)
365 PF05565 Sipho_Gp157: Siphovir 43.0 2.9E+02 0.0063 27.2 10.7 95 565-662 5-101 (162)
366 KOG0992 Uncharacterized conser 42.9 2.4E+02 0.0053 33.2 11.4 29 560-588 196-224 (613)
367 COG4942 Membrane-bound metallo 42.8 3.2E+02 0.0069 31.4 12.2 23 593-615 214-236 (420)
368 KOG4593 Mitotic checkpoint pro 42.7 4E+02 0.0087 32.5 13.4 26 621-646 147-172 (716)
369 KOG2185 Predicted RNA-processi 42.6 56 0.0012 37.2 6.3 58 559-616 411-471 (486)
370 KOG4809 Rab6 GTPase-interactin 42.5 1.4E+02 0.003 35.4 9.5 62 560-629 256-328 (654)
371 TIGR02971 heterocyst_DevB ABC 42.3 4.4E+02 0.0096 27.9 12.9 9 586-594 118-126 (327)
372 TIGR00414 serS seryl-tRNA synt 42.3 1E+02 0.0022 34.8 8.4 27 629-655 84-110 (418)
373 PF09403 FadA: Adhesion protei 41.9 1.4E+02 0.003 28.8 8.0 14 631-644 92-105 (126)
374 PF10267 Tmemb_cc2: Predicted 41.8 5.8E+02 0.013 29.1 16.8 87 561-650 212-309 (395)
375 PF06428 Sec2p: GDP/GTP exchan 41.5 29 0.00064 32.0 3.4 25 631-655 54-78 (100)
376 PRK13454 F0F1 ATP synthase sub 41.4 3.8E+02 0.0081 26.8 11.9 14 599-612 86-99 (181)
377 cd07596 BAR_SNX The Bin/Amphip 41.2 3.1E+02 0.0068 26.6 10.7 51 589-639 145-196 (218)
378 PF10458 Val_tRNA-synt_C: Valy 40.9 89 0.0019 26.3 5.9 47 562-608 5-65 (66)
379 KOG2891 Surface glycoprotein [ 40.9 1.9E+02 0.0042 31.7 9.7 78 559-655 285-391 (445)
380 PTZ00009 heat shock 70 kDa pro 40.6 2.5E+02 0.0055 33.3 11.7 65 589-653 539-614 (653)
381 PRK14151 heat shock protein Gr 40.6 1.5E+02 0.0032 30.0 8.4 92 558-652 24-119 (176)
382 PRK10841 hybrid sensory kinase 40.5 29 0.00064 42.6 4.2 45 25-69 591-635 (924)
383 PRK13428 F0F1 ATP synthase sub 40.5 3E+02 0.0066 31.4 11.9 13 604-616 61-73 (445)
384 COG0419 SbcC ATPase involved i 40.3 3.3E+02 0.0071 33.7 12.9 19 28-48 27-45 (908)
385 PF01576 Myosin_tail_1: Myosin 40.2 9.4 0.0002 46.6 0.0 83 552-640 25-114 (859)
386 PRK13460 F0F1 ATP synthase sub 40.0 3.8E+02 0.0081 26.4 12.3 50 573-622 45-94 (173)
387 KOG4593 Mitotic checkpoint pro 39.9 2.8E+02 0.006 33.8 11.6 86 559-644 195-298 (716)
388 PF02994 Transposase_22: L1 tr 39.9 98 0.0021 34.4 7.8 12 563-574 107-118 (370)
389 PF02841 GBP_C: Guanylate-bind 39.9 4.1E+02 0.0089 28.4 12.2 22 352-373 96-117 (297)
390 KOG3915 Transcription regulato 39.5 4.4E+02 0.0094 31.0 12.5 50 584-633 537-593 (641)
391 PRK10618 phosphotransfer inter 39.4 39 0.00085 41.6 5.0 61 26-87 598-661 (894)
392 KOG0995 Centromere-associated 39.3 4.2E+02 0.0091 31.6 12.7 32 621-652 353-384 (581)
393 PRK10490 sensor protein KdpD; 38.8 22 0.00049 43.4 2.8 60 25-86 808-870 (895)
394 PRK14139 heat shock protein Gr 38.8 3.2E+02 0.0069 28.0 10.5 88 560-650 38-126 (185)
395 PRK14155 heat shock protein Gr 38.8 1.8E+02 0.004 30.1 9.0 12 571-582 16-27 (208)
396 TIGR01924 rsbW_low_gc serine-p 38.7 19 0.00041 34.8 1.8 64 17-83 67-130 (159)
397 TIGR00634 recN DNA repair prot 38.7 3.4E+02 0.0074 31.6 12.2 24 26-51 22-45 (563)
398 PF13166 AAA_13: AAA domain 38.7 4E+02 0.0086 31.5 12.9 26 26-51 16-42 (712)
399 PF08397 IMD: IRSp53/MIM homol 38.6 1.2E+02 0.0027 30.8 7.8 35 594-628 143-178 (219)
400 COG2972 Predicted signal trans 38.5 21 0.00046 40.0 2.4 43 25-77 384-426 (456)
401 TIGR01005 eps_transp_fam exopo 38.3 2.9E+02 0.0063 33.1 11.8 8 331-338 154-161 (754)
402 PF02403 Seryl_tRNA_N: Seryl-t 38.3 1.6E+02 0.0034 26.5 7.6 65 589-654 29-93 (108)
403 PF15265 FAM196: FAM196 family 38.3 2.3E+02 0.005 33.3 10.5 36 568-603 388-423 (514)
404 PF09726 Macoilin: Transmembra 38.2 8.3E+02 0.018 29.9 21.7 39 614-652 506-544 (697)
405 KOG0447 Dynamin-like GTP bindi 38.2 66 0.0014 38.2 6.1 55 567-622 225-291 (980)
406 PLN02939 transferase, transfer 38.1 2.7E+02 0.0058 35.2 11.6 24 561-584 226-249 (977)
407 PF03961 DUF342: Protein of un 37.9 1.3E+02 0.0028 34.0 8.4 28 611-638 372-399 (451)
408 COG1842 PspA Phage shock prote 37.6 3.2E+02 0.0068 28.7 10.5 43 564-606 27-69 (225)
409 TIGR00019 prfA peptide chain r 37.6 2.6E+02 0.0056 31.4 10.5 18 604-621 54-71 (360)
410 TIGR00570 cdk7 CDK-activating 37.5 2.9E+02 0.0064 30.5 10.6 23 573-595 118-140 (309)
411 TIGR01730 RND_mfp RND family e 37.5 1.8E+02 0.0039 30.1 8.8 33 622-654 103-135 (322)
412 PRK14147 heat shock protein Gr 37.4 2.1E+02 0.0045 28.8 8.9 59 558-619 22-81 (172)
413 PF01486 K-box: K-box region; 37.3 93 0.002 28.0 5.9 45 563-607 21-67 (100)
414 PRK14151 heat shock protein Gr 37.2 4.1E+02 0.0089 26.9 11.0 46 590-635 21-66 (176)
415 cd04779 HTH_MerR-like_sg4 Heli 37.1 1.9E+02 0.0041 27.8 8.2 83 562-648 48-131 (134)
416 PF11577 NEMO: NF-kappa-B esse 37.0 2.1E+02 0.0046 24.9 7.7 45 600-647 20-64 (68)
417 KOG4809 Rab6 GTPase-interactin 37.0 4.8E+02 0.01 31.2 12.6 99 559-658 330-458 (654)
418 PF07160 DUF1395: Protein of u 36.9 87 0.0019 33.0 6.4 53 556-608 17-69 (243)
419 KOG0978 E3 ubiquitin ligase in 36.9 2.9E+02 0.0063 33.7 11.3 51 613-663 593-650 (698)
420 TIGR02350 prok_dnaK chaperone 36.8 2.3E+02 0.005 33.0 10.5 18 589-606 525-542 (595)
421 PRK14147 heat shock protein Gr 36.8 4.3E+02 0.0093 26.6 11.0 11 593-603 43-53 (172)
422 PRK14162 heat shock protein Gr 36.8 2.3E+02 0.0051 29.1 9.3 89 560-651 45-136 (194)
423 PTZ00400 DnaK-type molecular c 36.7 2.4E+02 0.0052 33.7 10.8 64 589-652 568-637 (663)
424 COG3851 UhpB Signal transducti 36.7 17 0.00036 41.0 1.2 31 11-42 425-456 (497)
425 PRK06569 F0F1 ATP synthase sub 36.7 4.5E+02 0.0097 26.3 11.1 83 577-659 39-124 (155)
426 KOG0249 LAR-interacting protei 36.6 2.1E+02 0.0045 35.1 9.9 33 551-585 97-129 (916)
427 TIGR01000 bacteriocin_acc bact 36.5 2.6E+02 0.0057 31.5 10.6 60 593-652 247-315 (457)
428 PRK09959 hybrid sensory histid 36.3 36 0.00078 42.2 4.1 57 28-86 865-924 (1197)
429 TIGR01144 ATP_synt_b ATP synth 36.3 3.7E+02 0.0081 25.3 12.4 44 574-617 25-68 (147)
430 PF05103 DivIVA: DivIVA protei 36.3 13 0.00029 34.1 0.4 44 561-604 32-75 (131)
431 PF11559 ADIP: Afadin- and alp 36.1 3.9E+02 0.0085 25.5 13.1 69 565-633 45-117 (151)
432 PF15463 ECM11: Extracellular 36.1 1.9E+02 0.0042 27.7 8.2 58 590-647 77-134 (139)
433 PF09738 DUF2051: Double stran 36.1 2.5E+02 0.0055 30.7 9.9 36 589-624 119-154 (302)
434 TIGR01554 major_cap_HK97 phage 35.9 1.3E+02 0.0029 32.9 7.9 13 563-575 8-20 (378)
435 PF11068 YlqD: YlqD protein; 35.9 3.4E+02 0.0074 26.3 9.7 28 612-639 58-85 (131)
436 cd07647 F-BAR_PSTPIP The F-BAR 35.8 4.7E+02 0.01 27.0 11.5 17 628-644 153-169 (239)
437 PF13935 Ead_Ea22: Ead/Ea22-li 35.7 2.4E+02 0.0052 27.1 8.7 45 560-605 67-113 (139)
438 PF04420 CHD5: CHD5-like prote 35.7 45 0.00098 32.8 3.9 47 564-612 43-89 (161)
439 PLN02381 valyl-tRNA synthetase 35.6 93 0.002 39.3 7.4 31 147-177 494-532 (1066)
440 PRK14139 heat shock protein Gr 35.6 2.5E+02 0.0055 28.7 9.2 35 569-603 33-67 (185)
441 PRK14148 heat shock protein Gr 35.4 2E+02 0.0043 29.7 8.5 58 592-651 43-100 (195)
442 PF06936 Selenoprotein_S: Sele 35.4 2.2E+02 0.0047 29.3 8.8 53 593-658 80-132 (190)
443 PF09744 Jnk-SapK_ap_N: JNK_SA 35.3 4.2E+02 0.0092 26.4 10.5 94 559-652 62-155 (158)
444 TIGR01000 bacteriocin_acc bact 35.3 3.5E+02 0.0075 30.6 11.3 35 552-586 88-122 (457)
445 PF14073 Cep57_CLD: Centrosome 35.0 5.2E+02 0.011 26.5 11.2 29 589-617 71-99 (178)
446 KOG4787 Uncharacterized conser 35.0 3.4E+02 0.0075 32.6 11.1 47 607-656 438-487 (852)
447 KOG4603 TBP-1 interacting prot 35.0 1.6E+02 0.0035 30.1 7.6 47 571-617 82-130 (201)
448 PF06273 eIF-4B: Plant specifi 34.9 51 0.0011 38.1 4.6 21 564-584 369-389 (492)
449 TIGR02231 conserved hypothetic 34.8 3.9E+02 0.0084 30.7 11.7 22 563-584 73-94 (525)
450 PRK14144 heat shock protein Gr 34.8 1.8E+02 0.0039 30.1 8.1 41 594-634 50-90 (199)
451 KOG1977 DNA mismatch repair pr 34.8 33 0.00072 41.5 3.2 73 10-88 36-114 (1142)
452 PF02346 Vac_Fusion: Chordopox 34.7 1.2E+02 0.0026 25.6 5.6 41 571-611 4-44 (57)
453 cd07623 BAR_SNX1_2 The Bin/Amp 34.7 3.1E+02 0.0068 28.2 9.9 68 569-638 131-199 (224)
454 PF08537 NBP1: Fungal Nap bind 34.6 67 0.0014 35.5 5.3 39 563-601 177-222 (323)
455 KOG0994 Extracellular matrix g 34.6 2.4E+02 0.0051 36.5 10.2 28 596-624 1654-1681(1758)
456 KOG4438 Centromere-associated 34.5 3.3E+02 0.0071 31.4 10.6 55 570-624 154-208 (446)
457 PRK14148 heat shock protein Gr 34.5 2.7E+02 0.0059 28.7 9.3 87 560-651 46-137 (195)
458 KOG0980 Actin-binding protein 34.4 4.7E+02 0.01 32.8 12.5 10 78-87 28-37 (980)
459 KOG0240 Kinesin (SMY1 subfamil 34.3 4.1E+02 0.0088 31.8 11.6 8 166-173 81-88 (607)
460 KOG2991 Splicing regulator [RN 34.3 4.8E+02 0.01 28.5 11.2 104 552-655 168-308 (330)
461 COG1382 GimC Prefoldin, chaper 34.2 4.3E+02 0.0094 25.4 11.9 35 576-610 14-48 (119)
462 TIGR02680 conserved hypothetic 34.1 4.6E+02 0.01 34.2 13.3 12 37-48 61-72 (1353)
463 PRK09173 F0F1 ATP synthase sub 33.6 4.4E+02 0.0096 25.4 12.3 47 573-619 31-77 (159)
464 PF08826 DMPK_coil: DMPK coile 33.5 1.5E+02 0.0032 25.4 6.0 43 566-608 16-58 (61)
465 KOG0946 ER-Golgi vesicle-tethe 33.4 3E+02 0.0066 34.2 10.6 19 356-374 494-513 (970)
466 PF05010 TACC: Transforming ac 33.4 5.8E+02 0.012 26.6 12.4 102 553-654 1-137 (207)
467 COG4741 Predicted secreted end 33.3 1.5E+02 0.0032 29.9 6.9 47 583-640 26-75 (175)
468 KOG1937 Uncharacterized conser 33.3 2.4E+02 0.0052 32.8 9.4 23 616-638 354-376 (521)
469 KOG0612 Rho-associated, coiled 33.1 3.9E+02 0.0084 34.7 11.8 11 239-249 203-213 (1317)
470 PRK03947 prefoldin subunit alp 33.0 4.2E+02 0.0092 24.9 11.8 37 617-653 97-133 (140)
471 TIGR02338 gimC_beta prefoldin, 33.0 3.9E+02 0.0084 24.5 12.0 37 574-610 9-45 (110)
472 KOG0240 Kinesin (SMY1 subfamil 33.0 3.2E+02 0.007 32.6 10.5 6 305-310 216-221 (607)
473 PRK14160 heat shock protein Gr 32.8 3.3E+02 0.0071 28.5 9.7 16 619-634 91-106 (211)
474 PRK00290 dnaK molecular chaper 32.8 2.7E+02 0.0058 32.8 10.2 64 589-652 527-596 (627)
475 PF01442 Apolipoprotein: Apoli 32.7 4.2E+02 0.0092 24.9 12.2 6 633-638 160-165 (202)
476 PRK13410 molecular chaperone D 32.7 3.2E+02 0.0069 32.8 10.9 64 589-652 529-602 (668)
477 KOG0979 Structural maintenance 32.6 2.7E+02 0.0059 35.2 10.3 98 549-646 813-913 (1072)
478 PF09766 FimP: Fms-interacting 32.5 2.3E+02 0.0049 31.4 9.0 54 584-648 96-152 (355)
479 PF10359 Fmp27_WPPW: RNA pol I 32.4 1.3E+02 0.0028 34.5 7.4 21 589-609 170-190 (475)
480 KOG4005 Transcription factor X 32.4 1.6E+02 0.0034 31.6 7.3 25 589-613 118-142 (292)
481 PF10211 Ax_dynein_light: Axon 32.3 4.1E+02 0.0089 26.9 10.2 34 589-622 127-160 (189)
482 PF06005 DUF904: Protein of un 32.2 2.4E+02 0.0052 24.6 7.3 13 590-602 19-31 (72)
483 cd07624 BAR_SNX7_30 The Bin/Am 32.2 1.9E+02 0.0042 29.1 7.9 40 584-623 128-168 (200)
484 COG4191 Signal transduction hi 32.2 38 0.00082 40.1 3.1 35 15-49 519-553 (603)
485 PRK14160 heat shock protein Gr 32.1 5.5E+02 0.012 26.8 11.2 43 561-603 54-96 (211)
486 KOG4762 DNA replication factor 31.9 1.5E+02 0.0032 34.7 7.6 94 562-662 361-459 (498)
487 PF15290 Syntaphilin: Golgi-lo 31.9 2.9E+02 0.0063 30.3 9.3 127 457-621 1-142 (305)
488 PF05622 HOOK: HOOK protein; 31.9 15 0.00033 43.6 0.0 102 554-655 452-567 (713)
489 PF04977 DivIC: Septum formati 31.8 1.6E+02 0.0034 24.6 6.1 48 590-637 18-65 (80)
490 PF10234 Cluap1: Clusterin-ass 31.8 3.3E+02 0.0071 29.5 9.7 82 577-658 139-220 (267)
491 PRK13923 putative spore coat p 31.7 1.9E+02 0.0041 29.3 7.5 69 563-631 64-160 (170)
492 COG0576 GrpE Molecular chapero 31.7 5.8E+02 0.012 26.1 11.3 84 563-650 45-133 (193)
493 PF10828 DUF2570: Protein of u 31.7 3.6E+02 0.0078 24.9 8.9 59 582-640 28-86 (110)
494 KOG1850 Myosin-like coiled-coi 31.5 6E+02 0.013 28.6 11.7 83 565-650 134-216 (391)
495 cd00632 Prefoldin_beta Prefold 31.5 4E+02 0.0086 24.1 12.0 86 571-656 2-105 (105)
496 COG0711 AtpF F0F1-type ATP syn 31.4 5.1E+02 0.011 25.4 12.3 81 573-653 35-124 (161)
497 COG3096 MukB Uncharacterized p 31.3 5.2E+02 0.011 32.2 11.9 89 565-656 977-1101(1480)
498 PRK00591 prfA peptide chain re 31.2 4.6E+02 0.01 29.5 11.1 93 556-648 1-102 (359)
499 PF08826 DMPK_coil: DMPK coile 30.9 2.5E+02 0.0054 24.0 7.0 48 578-625 14-61 (61)
500 cd00890 Prefoldin Prefoldin is 30.9 4.1E+02 0.0089 24.1 11.9 87 568-654 2-127 (129)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.7e-53 Score=481.13 Aligned_cols=558 Identities=37% Similarity=0.554 Sum_probs=406.3
Q ss_pred cccccccchhcccCCCCCCCcceEEEE-----ECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccccccCCeEE
Q 005993 7 GLFSNSKMLQLCSNLPSLWSFHCICFA-----DNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVI 81 (666)
Q Consensus 7 ~~~~~a~a~n~~i~~~~~~G~~~L~I~-----DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgSMRLGkdvi 81 (666)
++|+..+-+|-+.|. -.+.++|+ |||+||+++-+..||.+|++++......+|||||||||++||||++++
T Consensus 166 ~tf~~vd~I~p~~d~----~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfktst~rlGa~~i 241 (775)
T KOG1845|consen 166 ATFVRVDYINPVMDI----FIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKTSTMRLGADAI 241 (775)
T ss_pred cceEEeeeecccccc----cceeEEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhccccccchhhhcccee
Confidence 577666666666553 26788888 679999999999999999999975578999999999999999999999
Q ss_pred EEeeecCCCCCCCceeEeehhhhhhhhcCCCceEEee----eeeccCccceeeeeccchhhHHHHHHH-----HhhcCCC
Q 005993 82 VFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPM----LDYEGSQQEWKKIIRSSLDDWNRNVET-----IVQWSPF 152 (666)
Q Consensus 82 VfSK~~g~~~~~~t~SigLLS~TFL~~~g~deIvVPm----vswdld~~~~~~ii~~~~~dw~~nL~i-----IlkySPF 152 (666)
||+|..+..|...+++|||||||||+.++.++++||| ..++...+.|.+|++.+..+|..|+.+ +++|+||
T Consensus 242 ~~~R~~~~~~~kstqsiglls~tfL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~~i~~~~~~L~w~p~ 321 (775)
T KOG1845|consen 242 VFSRCESRRGLKSTQSIGLLSYTFLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNLEIEVTERFLKWSPY 321 (775)
T ss_pred EeehhhhhccCCcceeEEEEEEeeeccccCCceeEecchhhhhhhcccccccceeeccccccceeeeeHHHHHHhhcCcc
Confidence 9999877789999999999999999999999999999 889988888999998889999999998 9999999
Q ss_pred CCHHHHHHH---------------HhhcCCCeeEEEEEcc--ccccCCceeecCCCCCCceeecCCcchhhhhhhhcCCC
Q 005993 153 SSEADLLHQ---------------FNLMKDHGTRIIIYNL--WEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYP 215 (666)
Q Consensus 153 ~sE~eLl~Q---------------fd~Ig~~GT~III~NL--~r~~~G~~ELDFdtD~~DI~I~g~~~d~k~~q~a~~~P 215 (666)
.++.+++.| |+.+..+||.||+||+ |+.+.|.+|+||+.++++|.
T Consensus 322 ~~~~~~l~q~~v~~~~~~~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~------------------ 383 (775)
T KOG1845|consen 322 SHLLDLLGQNSVQYSKDFPEFGHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIP------------------ 383 (775)
T ss_pred ccHHHHhhhhhhhhccccchhcchhhhccCCCceeeeechhhhcccccceeeccccCccccc------------------
Confidence 999999999 8888999999999999 99899999999999999985
Q ss_pred CccchhhhHhhHHHHHHHhhccCCCCeEEEEcCeeeccccccccccccceEEeecCCCCCCCCccccceeeEEEeeecCc
Q 005993 216 NSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDA 295 (666)
Q Consensus 216 ~~~h~~~~~ySLRaYLSILYLr~pprmrIiLrGkkVe~~~~~~dL~~~e~i~YkPq~~~~~lp~~l~~~v~vtiGflk~a 295 (666)
..+.++++.|.+|||+..+++++++++|.++.|+.+..+++..+.++|+|+....+.+ .-.+.+....||.+.+
T Consensus 384 -----~~~~~~~~s~~sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~-~~~~~~~~~~~~~~~~ 457 (775)
T KOG1845|consen 384 -----WTYCHSHLSEASILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGK-QRLIKLSPKPGFVKDA 457 (775)
T ss_pred -----ccchhhhhhcccccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCcc-chhhcccCCCCccccc
Confidence 1356889999999999999999999999999999999999999999999995432211 1134445689999999
Q ss_pred cccccccceeEEecCcccc----chhhcccCCCCCCcceeEEEecccccccccccccchhHHHHHHHHHHHHHHHHHhhh
Q 005993 296 KHHIDVQGFNVYHKNRLIK----PFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNN 371 (666)
Q Consensus 296 ~~~~~~qGf~VYhkNRLIk----~y~rVg~~~~s~GrGVIGVvEanflePtHNKQdFe~t~ly~rLe~rL~q~~~eYW~~ 371 (666)
+++++++|++|||++|||+ |+||.++..++.+++|++++.+||++|+|++|+|+++...++.+.++.++++.||..
T Consensus 458 ~~~~~~~~~nV~~~~~lie~~~~~~~k~~n~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~ 537 (775)
T KOG1845|consen 458 PRPIDVQQFNVSHGPRLIEHGCRPFVKIDNATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASSESRDKQSLNTYEEK 537 (775)
T ss_pred CCCCCccCCccccCCcchhhcccceeeecCCCccccccccceecccccccCCCccccccccccccchhhhhhcccccccc
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccc--ccccccCCCCCCCCCcccCCCCCCCcccccccccccccCCCCCCcccCCCCCCCCCCCcc
Q 005993 372 NCHEIGYAPRRYKKYIKD--SYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYGDRKGHESSKG 449 (666)
Q Consensus 372 ~c~~iGy~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (666)
.|++++|.+....+..+. ++.++..| +.. |. + .++.-++ -. +.+.-.
T Consensus 538 ~~~~i~~~~~q~~~~~~~~~~~~Ke~~~--~~~--~~---~-~~~~~~~------~~------~~~~~~----------- 586 (775)
T KOG1845|consen 538 KCLRIDEAGRQLQKERESTTTVVKEEKP--ENN--HL---S-SSKRTQR------RK------STGRAI----------- 586 (775)
T ss_pred cccccCccchhhhhhhcccceeeccccc--ccc--hh---c-chhcccc------cc------cccccc-----------
Confidence 999999999776666543 23333333 211 10 0 1111000 00 000000
Q ss_pred cccccCCccccCCCcccCCCCCCCCCCCcccchhhhccccCCCCcccccccccccCCCCCCcCCCCccccccccccCCCC
Q 005993 450 KYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLVDSESQQDGAS 529 (666)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (666)
..++-....++...|.+. ..+|+.-. .+....+..-.+.+.. ..++.-..+..-+ ..|-||+.
T Consensus 587 ----~~~~~~~~~~~~~~~~~~--------~~~v~sq~---~~~~~e~e~~k~~~~~-~~~a~~~~~~~~~-~~~~~~~~ 649 (775)
T KOG1845|consen 587 ----SVAVEKFNLRSGPNGRGQ--------IDMVESQE---TPLLKEVERLKKKRRR-AALALEVQSSKNE-EEQSDDDE 649 (775)
T ss_pred ----ccchhhhccccccCCcCC--------cccccccc---chhhhHHHHhhhhhhh-hhhhhhhccccch-hhhhccch
Confidence 000000011111111110 00000000 0000000000001110 0000000000001 11333333
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCccCccccchhhhhhhhhhhHHHHHHHHhHH-------hHHHHHHhhhcHHHHHHHHH
Q 005993 530 GGSSVRPFMPSQSKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRLEKKEG-------ELQEERERCRSLEAQLKVMQ 602 (666)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-------~~~~e~~~~~~l~~~~~~~~ 602 (666)
---++...-... .- .....+ . .+-+|++.+.+.-+++..... ++.++.+..+.|+.++++..
T Consensus 650 ~~~~e~~~~~~~-~~-------~~~~~~--~-~~~~l~~~~~~~l~~~~~~~~t~~~q~~~~n~~~~~~~~~~~~~k~~~ 718 (775)
T KOG1845|consen 650 DSLNEVRRKSAK-LK-------SEQKQK--K-TLVELEETRKKWLRSMLNQSLTAGEQLKSLNQQEDFDKTLEVELKESR 718 (775)
T ss_pred hhhhHHhhhccc-cc-------hhhccc--H-HHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccccccchHHHHHHHH
Confidence 211111100000 00 001112 2 377777777777666654333 24555588999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 603 QTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 603 ~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
.+|..+.+.|+++.+.|..||.+|+.||..+|.||..+ .+.++++..+.
T Consensus 719 n~l~~~~~~~~s~~~~~~~~~~~~~~e~~l~~~k~~~~-~~~~~~~~~~~ 767 (775)
T KOG1845|consen 719 NKLQNLRNKLQSLADMFIQERADRDKEEDLQRFKLPVS-GTLEKVLKDIE 767 (775)
T ss_pred HHHHHHHHHHHhcchhhhhHHHhhhhhhhhhhhcccch-hhHHHHhhhhH
Confidence 99999999999999999999999999999999999754 45556655544
No 2
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=7.8e-32 Score=305.83 Aligned_cols=272 Identities=24% Similarity=0.321 Sum_probs=217.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccccccCCeEEEEeeecCCCCCCCceeEeehhhhhhhh
Q 005993 29 CICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRS 108 (666)
Q Consensus 29 ~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g~~~~~~t~SigLLS~TFL~~ 108 (666)
||++.|||.||+++++.++.+|+.. ...||+||||+|+++||+|+++++||+..+ +++++|+|+||++.
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~~-----~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~------~~s~~~~sqt~~e~ 69 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAVG-----LYGIGDYGNGLKSGSMRIGKDFILFTKKES------TMSCLFLSQTFHES 69 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhccc-----ccccccccCcccccccccCcccceeecccc------ccceeeeecccccc
Confidence 6899999999999999999999533 347999999999999999999999999764 89999999999999
Q ss_pred cCCCceEEeeeeeccCccceeeeeccchhhHHHHHHHHhhcCCCCCHHHHHHHHhhc-CCCe-eEEEEEccccccCCcee
Q 005993 109 TGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLM-KDHG-TRIIIYNLWEDDQGLLE 186 (666)
Q Consensus 109 ~g~deIvVPmvswdld~~~~~~ii~~~~~dw~~nL~iIlkySPF~sE~eLl~Qfd~I-g~~G-T~III~NL~r~~~G~~E 186 (666)
+..+.++||+++|+..++. + ..+.+..+|++|+.+|||.++++++.+++.| +.+| |.+||+|+.+...|.++
T Consensus 70 ~~~~~vvvP~~t~~~~~~~---~---~~~k~~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnats 143 (775)
T KOG1845|consen 70 EADDAVVVPCPTFNPRTRE---I---VTEKFAFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATS 143 (775)
T ss_pred cccccceeccccccccccc---c---cccccccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcc
Confidence 9999999999999988743 2 2277888999999999999999999999998 6665 99999999999999999
Q ss_pred ecCCCCCCceeecCCcchhhhhhhhcCCCCccchhhhHhhHHHHHHHhhccCCCCeEEEEcCeeeccccccccc--cccc
Q 005993 187 LDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDM--MLSK 264 (666)
Q Consensus 187 LDFdtD~~DI~I~g~~~d~k~~q~a~~~P~~~h~~~~~ySLRaYLSILYLr~pprmrIiLrGkkVe~~~~~~dL--~~~e 264 (666)
+||..|+.||++.++.- + +| .+. .|+.++|+. |+|.|++++..|++.+++.+. |.++
T Consensus 144 hk~a~~a~aeLldnalD-E--------i~-------~~~---tf~~vd~I~--p~~d~~i~a~~v~~~~~s~~gg~~~~~ 202 (775)
T KOG1845|consen 144 HKWAKGAIAELLDNALD-E--------IT-------NGA---TFVRVDYIN--PVMDIFIRALVVQLKRISDDGGGMKPE 202 (775)
T ss_pred cccccChhhhhcccccc-c--------cc-------ccc---ceEEeeeec--ccccccceeEEeeccceeccccccCHH
Confidence 99999999999876432 1 12 122 449999997 999999999999999877663 2222
Q ss_pred eEEeecCCCC--CCCCccccceeeEEEeeecCccccccccceeEEecCccccchhhcccCCCCCCcceeEEEeccccccc
Q 005993 265 KVTYRPQPGA--SGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPA 342 (666)
Q Consensus 265 ~i~YkPq~~~--~~lp~~l~~~v~vtiGflk~a~~~~~~qGf~VYhkNRLIk~y~rVg~~~~s~GrGVIGVvEanflePt 342 (666)
.+ =+....+ ... +-...+.+...||.+.... -|..+|+-+|. -...+.++.+.||++..+||++|
T Consensus 203 ~i-~~~m~l~~~~k~-e~~~tv~q~~~gfktst~r----lGa~~i~~~R~-------~~~~~~kstqsiglls~tfL~~t 269 (775)
T KOG1845|consen 203 VI-RKCMSLGYSSKK-EANSTVGQYGNGFKTSTMR----LGADAIVFSRC-------ESRRGLKSTQSIGLLSYTFLRKT 269 (775)
T ss_pred HH-HHHHHhhhhhhh-hhhhhhhhhccccccchhh----hccceeEeehh-------hhhccCCcceeEEEEEEeeeccc
Confidence 11 0111000 000 0012334557888877763 39999999998 11335678899999999999999
Q ss_pred ccccccchhH
Q 005993 343 HDKQGFERTT 352 (666)
Q Consensus 343 HNKQdFe~t~ 352 (666)
+ |+||....
T Consensus 270 ~-~~d~iv~~ 278 (775)
T KOG1845|consen 270 G-KRDFIVPM 278 (775)
T ss_pred c-CCceeEec
Confidence 9 99998766
No 3
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.08 E-value=2.2e-11 Score=113.32 Aligned_cols=78 Identities=26% Similarity=0.440 Sum_probs=61.9
Q ss_pred ccccchhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCC--ccccccccCCcccccccccCCeEEEEeeec
Q 005993 10 SNSKMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSK--AANTIGQYGNGFKTSTMRLGADVIVFSCCC 87 (666)
Q Consensus 10 ~~a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~--~~~~IGrYGnGfKTgSMRLGkdviVfSK~~ 87 (666)
|+|..+.+.|+..+ .+...|.|.|||.||+++++..++.+|.+.+.. ....+|+||.|||.|.+.+|+.+.|.|+..
T Consensus 17 A~a~~I~I~i~~~~-~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~ 95 (137)
T PF13589_consen 17 AGATNIKISIDEDK-KGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLAIFSLGDRVEVISKTN 95 (137)
T ss_dssp HHHHHEEEEEEEET-TTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGGGGGTEEEEEEEEEST
T ss_pred ccCCEEEEEEEcCC-CCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHHHHHhcCEEEEEEEEC
Confidence 34444455555433 577899999999999999999999999998852 356899999999999999999999999987
Q ss_pred C
Q 005993 88 G 88 (666)
Q Consensus 88 g 88 (666)
+
T Consensus 96 ~ 96 (137)
T PF13589_consen 96 G 96 (137)
T ss_dssp T
T ss_pred C
Confidence 6
No 4
>PRK05218 heat shock protein 90; Provisional
Probab=99.02 E-value=3.1e-09 Score=121.39 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=50.9
Q ss_pred cccceeEEecCccccchhh-cccCCCCCCcceeEEEecccccccccccccchhHHHHHHHHHHHHHHHH
Q 005993 300 DVQGFNVYHKNRLIKPFWR-LWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKD 367 (666)
Q Consensus 300 ~~qGf~VYhkNRLIk~y~r-Vg~~~~s~GrGVIGVvEanflePtHNKQdFe~t~ly~rLe~rL~q~~~e 367 (666)
..+|+.+|-|+|+|.---+ +.|. --+=|-||||++-|-|+.+-..|.+...++++.+.|.+.+.+
T Consensus 282 ~~~~~~lyvn~v~I~d~~~~lLP~---wl~Fv~GVVDs~dLplnvSRE~lq~~~~l~~i~~~l~~kv~~ 347 (613)
T PRK05218 282 RKGGLKLYVKRVFIMDDAEELLPE---YLRFVKGVIDSEDLPLNVSREILQEDRVVKKIRKAITKKVLD 347 (613)
T ss_pred ccccEEEEECcEEeeCchhhhchH---HHhheEEEeecCCCCCccCHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4579999999999987543 4443 335567899999999999999999998888777777665543
No 5
>PRK14083 HSP90 family protein; Provisional
Probab=98.51 E-value=1.5e-06 Score=99.57 Aligned_cols=62 Identities=21% Similarity=0.408 Sum_probs=52.1
Q ss_pred CCcceEEEEECCCCCCHHHHHHH-HhcCCCCCCCc------cccccccCCcccccccccCCeEEEEeeec
Q 005993 25 WSFHCICFADNGGGMNPDKMRHC-MSLGYSAKSKA------ANTIGQYGNGFKTSTMRLGADVIVFSCCC 87 (666)
Q Consensus 25 ~G~~~L~I~DDG~GMd~~el~~~-msfG~s~k~~~------~~~IGrYGnGfKTgSMRLGkdviVfSK~~ 87 (666)
.+...|.|.|||.||+.+++.+. +.+|.|.+... ...||+||.||.++ |.+|..|.|.||+.
T Consensus 60 ~~~~~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~-F~vad~v~V~Tr~~ 128 (601)
T PRK14083 60 AGGGTLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSC-FLVADEIVVVSRSA 128 (601)
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEE-EEecCEEEEEeccC
Confidence 35678999999999999999986 48888777432 24699999999976 67999999999975
No 6
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=7.1e-05 Score=85.79 Aligned_cols=63 Identities=29% Similarity=0.512 Sum_probs=49.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC----------CccccccccCCcccccccccCCeEEEEeeecCC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 89 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~----------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g~ 89 (666)
.+..|.|.|||.||+.+|+++-| ..+.|... ++..-|||||.||=||.| .+..|.|.||+.|.
T Consensus 72 ~~kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~ 145 (623)
T COG0326 72 DNKTLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGE 145 (623)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheee-eeeeEEEEeccCCC
Confidence 34689999999999999999988 34443321 224459999999998876 89999999998763
No 7
>PTZ00130 heat shock protein 90; Provisional
Probab=97.57 E-value=7.2e-05 Score=88.17 Aligned_cols=62 Identities=24% Similarity=0.442 Sum_probs=48.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC----------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~----------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
....|.|.|||.||+.+++.+-+ ..|+|... ....-|||||.||=|+.| .+..|.|.||+.+
T Consensus 133 ~~~tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~Trs~~ 205 (814)
T PTZ00130 133 EKNILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNN 205 (814)
T ss_pred CCCEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheee-ecCEEEEEEcCCC
Confidence 34589999999999999998776 55554311 123579999999987654 8999999999754
No 8
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=97.41 E-value=0.0013 Score=75.95 Aligned_cols=74 Identities=14% Similarity=0.220 Sum_probs=53.2
Q ss_pred ccccchhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCcc------ccccccCCcccccccccCCeEEEE
Q 005993 10 SNSKMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAA------NTIGQYGNGFKTSTMRLGADVIVF 83 (666)
Q Consensus 10 ~~a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~------~~IGrYGnGfKTgSMRLGkdviVf 83 (666)
|.|..+.+.|. -.|...+.|.|||.||+++++..++....+.|.... ...|..|.||-+.+ .+ ..+.|.
T Consensus 37 Agat~I~v~i~---~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~-~v-s~l~i~ 111 (617)
T PRK00095 37 AGATRIDIEIE---EGGLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGFRGEALPSIA-SV-SRLTLT 111 (617)
T ss_pred CCCCEEEEEEE---eCCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcchhHHHhhh-hc-eEEEEE
Confidence 34554555542 346678999999999999999999876666665331 35788888886555 44 479999
Q ss_pred eeecC
Q 005993 84 SCCCG 88 (666)
Q Consensus 84 SK~~g 88 (666)
||+.+
T Consensus 112 s~~~~ 116 (617)
T PRK00095 112 SRTAD 116 (617)
T ss_pred EecCC
Confidence 99764
No 9
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=97.35 E-value=0.00024 Score=83.06 Aligned_cols=61 Identities=25% Similarity=0.345 Sum_probs=47.0
Q ss_pred cceEEEEECCCCCCHHHHHHHH-hcCCCCCC---------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993 27 FHCICFADNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 27 ~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~---------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
...|.|.|||.||+.++|.+.+ ..|.|... .....|||||.||-|+. -+|..|.|.||+.+
T Consensus 71 ~~~L~I~DnGiGMt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~F-mvad~V~V~Srs~~ 141 (701)
T PTZ00272 71 NKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAY-LVADRVTVTSKNNS 141 (701)
T ss_pred CCEEEEEECCCCCCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEE-EeccEEEEEEecCC
Confidence 4579999999999999988877 45554221 11347999999998765 58899999999753
No 10
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.75 E-value=0.0015 Score=69.14 Aligned_cols=71 Identities=13% Similarity=0.214 Sum_probs=50.5
Q ss_pred cchhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCc------cccccccCCcccccccccCCeEEEEeee
Q 005993 13 KMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKA------ANTIGQYGNGFKTSTMRLGADVIVFSCC 86 (666)
Q Consensus 13 ~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~------~~~IGrYGnGfKTgSMRLGkdviVfSK~ 86 (666)
.|.++.|.+. ..|...|.|.|||.||+++++..+..-+++.|... ....|..|.|| +++.....|.|.||.
T Consensus 38 ~a~~I~i~~~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG~al--~si~~~s~~~i~S~~ 114 (312)
T TIGR00585 38 GATRIDVEIE-EGGLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRGEAL--ASISSVSRLTITTKT 114 (312)
T ss_pred CCCEEEEEEE-eCCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccchHH--HHHHhhCcEEEEEee
Confidence 3445555542 24445699999999999999998886666555422 13578888888 445555689999997
No 11
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.0031 Score=72.26 Aligned_cols=63 Identities=29% Similarity=0.414 Sum_probs=47.7
Q ss_pred CCcceEEEEECCCCCCHHHHHHHH----hcCCCC-----C--CCccccccccCCcccccccccCCeEEEEeeecC
Q 005993 25 WSFHCICFADNGGGMNPDKMRHCM----SLGYSA-----K--SKAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 25 ~G~~~L~I~DDG~GMd~~el~~~m----sfG~s~-----k--~~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
.....|.|.|.|.||+.++|.+++ +=|.+. + ..+.+.|||||.||.++.| .+..|.|+||...
T Consensus 99 k~~~tlti~DtGIGMTk~dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~ 172 (656)
T KOG0019|consen 99 KDKRTITIQDTGIGMTKEDLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPA 172 (656)
T ss_pred CCcceEEEEecCCCcCHHHHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhh-hhheeEEeeccCC
Confidence 456689999999999999999998 222211 1 1223589999999998865 6788999999764
No 12
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=96.08 E-value=0.025 Score=63.56 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=50.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHH---hcCCCCCCCccccccccCCcccc----cccccCCeEEEEeeecC
Q 005993 25 WSFHCICFADNGGGMNPDKMRHCM---SLGYSAKSKAANTIGQYGNGFKT----STMRLGADVIVFSCCCG 88 (666)
Q Consensus 25 ~G~~~L~I~DDG~GMd~~el~~~m---sfG~s~k~~~~~~IGrYGnGfKT----gSMRLGkdviVfSK~~g 88 (666)
.+...+.|.|||.|+.++++-++. -||++-. .....-||||.|.+. |-|..|+-|.|+|++.+
T Consensus 70 ~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh-~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~ 139 (538)
T COG1389 70 KDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFH-RNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGD 139 (538)
T ss_pred CceEEEEEecCCCCCChhHhHHHHHHHhccchhh-hhhhccccccccHHHHHHHHHhcCCCceEEEecCCC
Confidence 566789999999999999998875 4554432 234578999999996 45889999999999864
No 13
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.41 E-value=0.19 Score=47.38 Aligned_cols=89 Identities=29% Similarity=0.516 Sum_probs=70.9
Q ss_pred cccchhhhhhhhhhhHHHHHHHHhHHh---HHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993 557 CSLGANLGQLKQENHELKKRLEKKEGE---LQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRR 626 (666)
Q Consensus 557 ~~~~~~~~~~~~e~~~~~~~~~~~~~~---~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~ 626 (666)
..+.+.|+++.-|...|+++|.+++.. +..|+ +..+.+..++..++++++++++..+++..+|.| +
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE----K 94 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE----K 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----h
Confidence 346677999999999999999988776 44444 777888999999999999999999999999998 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005993 627 EREEENLRKKIKDASDTIQDLLD 649 (666)
Q Consensus 627 ~~e~~~lr~kl~~~~~~i~~~~~ 649 (666)
..+.|.||.-+.|--.-..+.++
T Consensus 95 ~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 95 SEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888877765544444443
No 14
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=95.40 E-value=0.55 Score=52.32 Aligned_cols=76 Identities=33% Similarity=0.397 Sum_probs=42.1
Q ss_pred hhhhhhhhhHHHHHHHHhHHh-----------HHHHHHhhhcHHHHHHHHHH--HHHHHHHHHH-----HHHHHHHHHHh
Q 005993 563 LGQLKQENHELKKRLEKKEGE-----------LQEERERCRSLEAQLKVMQQ--TIEELNKEQE-----SLIDIFAEERD 624 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~-----------~~~e~~~~~~l~~~~~~~~~--~~~~~~keq~-----~li~~f~eer~ 624 (666)
+..++++...|.+.+.++++. |+.|+.|+..||+||.|+-+ |-|-.|=.|+ .=++--+.||.
T Consensus 221 l~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRa 300 (395)
T PF10267_consen 221 LREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERA 300 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444444444443 57778899999999977654 3333333333 23455778887
Q ss_pred hhHHHH-HHHHHHHH
Q 005993 625 RREREE-ENLRKKIK 638 (666)
Q Consensus 625 ~~~~e~-~~lr~kl~ 638 (666)
|-=+|. |+...|+.
T Consensus 301 Rdi~E~~Es~qtRis 315 (395)
T PF10267_consen 301 RDIWEVMESCQTRIS 315 (395)
T ss_pred hHHHHHHHHHHHHHH
Confidence 644332 44444443
No 15
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=95.39 E-value=0.051 Score=64.47 Aligned_cols=62 Identities=23% Similarity=0.405 Sum_probs=47.0
Q ss_pred cceEEEEECCCCCCHHHHHHHH-hcCCCCCCCc-cccccccCCcccccc----cccCCeEEEEeeecC
Q 005993 27 FHCICFADNGGGMNPDKMRHCM-SLGYSAKSKA-ANTIGQYGNGFKTST----MRLGADVIVFSCCCG 88 (666)
Q Consensus 27 ~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~~~-~~~IGrYGnGfKTgS----MRLGkdviVfSK~~g 88 (666)
...|.|.|||.||+++++..+. +|.+.+|... ....|+.|.||.++. |..|..+.|-|+..+
T Consensus 81 ~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~ 148 (795)
T PRK14868 81 YYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQG 148 (795)
T ss_pred EEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCC
Confidence 3579999999999999999988 4655554322 245799999998655 334888999999754
No 16
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.24 E-value=0.21 Score=52.13 Aligned_cols=95 Identities=33% Similarity=0.464 Sum_probs=75.2
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhHHhH------------HHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHH------
Q 005993 558 SLGANLGQLKQENHELKKRLEKKEGEL------------QEER----ERCRSLEAQLKVMQQTIEELNKEQESL------ 615 (666)
Q Consensus 558 ~~~~~~~~~~~e~~~~~~~~~~~~~~~------------~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~l------ 615 (666)
++++-+.++..|..++++|+.+.|..+ .+|. ++..+|+.+|.++...++.+.+++++|
T Consensus 56 ~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~ 135 (239)
T COG1579 56 DLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLER 135 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557788889999999998888764 4444 677788888877777777776666554
Q ss_pred -HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 616 -IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 616 -i~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
-.-|+|.|.+-+.|.+.++.+....++.+..|.++++
T Consensus 136 ~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 136 LEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4568999999999999999999999999988888776
No 17
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.18 E-value=0.22 Score=57.29 Aligned_cols=80 Identities=35% Similarity=0.446 Sum_probs=65.1
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHH
Q 005993 559 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRERE---EENLRK 635 (666)
Q Consensus 559 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e---~~~lr~ 635 (666)
|.....+|++|+.+|++++.+++.+|..+.++|..|..+.+++....+.+.+|.+.|..-.++-+.|-.+= -..|..
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~q 234 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQ 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44457789999999999999999999999999999999999999999999999999988888777664332 234455
Q ss_pred HHH
Q 005993 636 KIK 638 (666)
Q Consensus 636 kl~ 638 (666)
|.+
T Consensus 235 k~~ 237 (546)
T PF07888_consen 235 KEK 237 (546)
T ss_pred HHH
Confidence 553
No 18
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.015 Score=65.61 Aligned_cols=62 Identities=24% Similarity=0.359 Sum_probs=44.8
Q ss_pred CcceEEEEECCCCCCHHHHHHHH----hcCCCCC-------CC----ccccccccCCcccccccccCCeEEEEeeecC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCM----SLGYSAK-------SK----AANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~m----sfG~s~k-------~~----~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
.+..|.|.|-|.||++++|++-+ .=|.+.- .. ..+.|||||.||=+| |-.+..|+|.||++.
T Consensus 140 e~klLhi~DtGiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsA-fLVAD~vvVtsKhNd 216 (785)
T KOG0020|consen 140 EKKLLHITDTGIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSA-FLVADRVVVTSKHND 216 (785)
T ss_pred hhCeeeEecccCCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhh-hhhcceEEEEeccCC
Confidence 45689999999999999999877 2222211 00 124699999999876 457788888888754
No 19
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=94.89 E-value=0.66 Score=51.39 Aligned_cols=67 Identities=34% Similarity=0.410 Sum_probs=45.1
Q ss_pred hhhhhhhhhHHHHHHHHhHHh------------------HHHHHHhhhcHHHHHHHHH----HHHHHHHHHHHHH---HH
Q 005993 563 LGQLKQENHELKKRLEKKEGE------------------LQEERERCRSLEAQLKVMQ----QTIEELNKEQESL---ID 617 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~------------------~~~e~~~~~~l~~~~~~~~----~~~~~~~keq~~l---i~ 617 (666)
+..+..|..|.|+-...++++ ||.|+=+|..||+||-++- ..|-.|+.||.+. |+
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeerva 341 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVA 341 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666655555554 5888889999999996553 3566666777654 56
Q ss_pred HHHHHHhhhHHH
Q 005993 618 IFAEERDRRERE 629 (666)
Q Consensus 618 ~f~eer~~~~~e 629 (666)
--+-||.|-=||
T Consensus 342 YQsyERaRdIqE 353 (455)
T KOG3850|consen 342 YQSYERARDIQE 353 (455)
T ss_pred HHHHHHHHHHHH
Confidence 677788765444
No 20
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.70 E-value=0.1 Score=61.72 Aligned_cols=39 Identities=31% Similarity=0.509 Sum_probs=21.7
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQL 598 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~ 598 (666)
...|.||++||.+|..||..+.-..++|+.-..+||.+|
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL 497 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRL 497 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666666666666666665555555554444444444
No 21
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.28 Score=56.81 Aligned_cols=86 Identities=27% Similarity=0.426 Sum_probs=51.0
Q ss_pred HHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-----hhhHHHHHHHHHHHHHHHHHHHHH
Q 005993 574 KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF-AEER-----DRREREEENLRKKIKDASDTIQDL 647 (666)
Q Consensus 574 ~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f-~eer-----~~~~~e~~~lr~kl~~~~~~i~~~ 647 (666)
.+++.+.++-+++=...++.|+..++++++.||.+..+-+.+..-. .+.| ..+|.+-+.|+++|.+....|.+|
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333444555555555555555544444443221 1122 235667789999999999999999
Q ss_pred HHHHhhhhhcCC
Q 005993 648 LDKIKLLEKMKT 659 (666)
Q Consensus 648 ~~~~~~~~~~~~ 659 (666)
-.+|+.+++|..
T Consensus 501 ~~~l~~l~k~~~ 512 (652)
T COG2433 501 ERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHh
Confidence 999998887653
No 22
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=94.11 E-value=0.065 Score=61.53 Aligned_cols=63 Identities=29% Similarity=0.453 Sum_probs=46.5
Q ss_pred CcceEEEEECCCCCCHHHHHHHH-hcCCCCCCCc-cccccccCCcccccc----cccCCeEEEEeeecC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKSKA-ANTIGQYGNGFKTST----MRLGADVIVFSCCCG 88 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~~~-~~~IGrYGnGfKTgS----MRLGkdviVfSK~~g 88 (666)
+...|.|.|||.||+++++..++ .|-+..+... ....|.+|.||..+. +..|..+.|.|+..+
T Consensus 73 ~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~ 141 (535)
T PRK04184 73 DHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGG 141 (535)
T ss_pred cEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCC
Confidence 34679999999999999999886 3434444322 346799999998753 445778999998754
No 23
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.72 E-value=1.7 Score=41.04 Aligned_cols=93 Identities=27% Similarity=0.384 Sum_probs=76.4
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLR 634 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr 634 (666)
-+..++++.....++....+....+|+ .....|.++++.++.++.++..+=++....+.+.+..=..+++-|.
T Consensus 25 ~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le 104 (132)
T PF07926_consen 25 QLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLE 104 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455666666666666666666667777 6677788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 005993 635 KKIKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 635 ~kl~~~~~~i~~~~~~~~~~ 654 (666)
+-+.++-..|.||-+|=+.|
T Consensus 105 ~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 105 KELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988774443
No 24
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=93.42 E-value=0.038 Score=48.46 Aligned_cols=69 Identities=17% Similarity=0.262 Sum_probs=47.3
Q ss_pred cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccccccc---ccCCeEEEEeee
Q 005993 17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTM---RLGADVIVFSCC 86 (666)
Q Consensus 17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgSM---RLGkdviVfSK~ 86 (666)
+.|.+....+...|.|.|||.||+++++..+..-+++.+. .....+.+|.||..+.. ++|-++.+-+..
T Consensus 27 I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~ 98 (111)
T PF02518_consen 27 IDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIVKQIAERHGGELTIESSE 98 (111)
T ss_dssp EEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEET
T ss_pred EEEEEEEecCeEEEEEEeccccccccccccchhhcccccc-cccccCCCChHHHHHHHHHHHCCCEEEEEEcC
Confidence 3344434457789999999999999999999875555443 34567779999964432 345555555553
No 25
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=92.99 E-value=1.2 Score=45.98 Aligned_cols=47 Identities=34% Similarity=0.581 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005993 607 ELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKL 653 (666)
Q Consensus 607 ~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~ 653 (666)
++-++-..|..+|-+||.-|.+.|+++.+||.+....|++-++.=+.
T Consensus 125 ~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~ 171 (247)
T PF06705_consen 125 ELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKN 171 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677889999999999999999999999999998777765443
No 26
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=92.61 E-value=0.17 Score=57.69 Aligned_cols=61 Identities=25% Similarity=0.330 Sum_probs=46.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHh-cCCCCCCC-ccccccccCCcccccc----cccCCeEEEEeeecC
Q 005993 28 HCICFADNGGGMNPDKMRHCMS-LGYSAKSK-AANTIGQYGNGFKTST----MRLGADVIVFSCCCG 88 (666)
Q Consensus 28 ~~L~I~DDG~GMd~~el~~~ms-fG~s~k~~-~~~~IGrYGnGfKTgS----MRLGkdviVfSK~~g 88 (666)
..|.|.|||.||+++++..++. |-+++|.. .....|..|.||.++. +..|..+.|.|+..|
T Consensus 65 ~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g 131 (488)
T TIGR01052 65 YKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGG 131 (488)
T ss_pred EEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEecCC
Confidence 4799999999999999998873 55555543 2345799999999553 455777999999765
No 27
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.04 E-value=1.5 Score=41.96 Aligned_cols=49 Identities=29% Similarity=0.508 Sum_probs=26.7
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLI-------DIFAEERDRREREEENLRKKI 637 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li-------~~f~eer~~~~~e~~~lr~kl 637 (666)
.+.+.|+.++..++.++.....|-..|. --+.-|..|+|+|-+.|+++|
T Consensus 94 ~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 94 EKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555554444443333333 234556667777777666665
No 28
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.87 E-value=3.1 Score=40.87 Aligned_cols=63 Identities=25% Similarity=0.398 Sum_probs=31.6
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 622 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ee 622 (666)
...+.+|.+|...+.+++...+..+....+....+.+.++.++.++..++..-+.+...|.+=
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666666666666666666655544443333333444444444444444444444444433
No 29
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.22 E-value=2.1 Score=43.89 Aligned_cols=56 Identities=16% Similarity=0.303 Sum_probs=33.0
Q ss_pred cccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 005993 557 CSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL 615 (666)
Q Consensus 557 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l 615 (666)
|+....+.+|++|..+|+.+|.....+...+ ...|...++++.++++++++|...|
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~---~~~l~~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQR---TAEMQQKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566678888888888888887776654422 2223344444444555544444444
No 30
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=90.87 E-value=1.5 Score=46.32 Aligned_cols=100 Identities=18% Similarity=0.288 Sum_probs=73.6
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHH------------hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEERE------------RCRSLEAQLKVMQQTIEELNKEQESLIDIFA----EER 623 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~------------~~~~l~~~~~~~~~~~~~~~keq~~li~~f~----eer 623 (666)
.+-++.|+.|+.++..++.+.+..+..|.. .++...++++.++++++++.++..+.+.... .++
T Consensus 141 ~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~ 220 (301)
T PF14362_consen 141 DAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALDAQIAARK 220 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Confidence 455888999999999999999999988882 3788889999999999999998888887777 444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 005993 624 DRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKT 659 (666)
Q Consensus 624 ~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~~~ 659 (666)
.+.+...+.....-....+.-..+|+++.++.....
T Consensus 221 ~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~L~~ 256 (301)
T PF14362_consen 221 ARLDEARQAKVAEFQAIISANDGFLARLEALWELTK 256 (301)
T ss_pred HHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHHHHh
Confidence 444443333333333333445779999999887663
No 31
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.85 E-value=4.4 Score=41.70 Aligned_cols=68 Identities=31% Similarity=0.496 Sum_probs=46.6
Q ss_pred chhhhhhhhhhhHHHHHHHHhHH-----h----------HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 560 GANLGQLKQENHELKKRLEKKEG-----E----------LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~-----~----------~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~ 624 (666)
..-|.+++.++..|+.++...-+ . +.+..+++..|..+++.+++.+++..++-+.+-+.....|.
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33477888888888888877654 2 22233777777777777777777777777777776666665
Q ss_pred hhH
Q 005993 625 RRE 627 (666)
Q Consensus 625 ~~~ 627 (666)
.-+
T Consensus 106 ~l~ 108 (302)
T PF10186_consen 106 RLS 108 (302)
T ss_pred HHH
Confidence 433
No 32
>PRK11637 AmiB activator; Provisional
Probab=90.42 E-value=3.9 Score=45.41 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=54.6
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 571 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLD 649 (666)
Q Consensus 571 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~ 649 (666)
...++.|.....+++.++...+.+..+++..+++|+...+|+..+++-+..++..++++.+.|+...+.....|.+|..
T Consensus 176 ~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~ 254 (428)
T PRK11637 176 KQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAER 254 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666666666777777777888888888888888888888777777777766666666665543
No 33
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=90.40 E-value=2.5 Score=55.30 Aligned_cols=92 Identities=26% Similarity=0.394 Sum_probs=65.5
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL---IDIFAEERDRREREEENLRKK 636 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l---i~~f~eer~~~~~e~~~lr~k 636 (666)
...+.+|.+...+|..|+..++++|+.|+..+..++.+..++...+++++++.+-. +..-.|-+.+|+.|...||..
T Consensus 1089 ~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~ 1168 (1930)
T KOG0161|consen 1089 QAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRD 1168 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888899999999999998888777777777777777777777665544 444556677777777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 005993 637 IKDASDTIQDLLDKI 651 (666)
Q Consensus 637 l~~~~~~i~~~~~~~ 651 (666)
|+++..+-...++.+
T Consensus 1169 leee~~~~e~~~~~l 1183 (1930)
T KOG0161|consen 1169 LEEETLDHEAQIEEL 1183 (1930)
T ss_pred HHHHHHhHHHHHHHH
Confidence 776655444444333
No 34
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.84 E-value=6.5 Score=38.63 Aligned_cols=88 Identities=28% Similarity=0.490 Sum_probs=52.2
Q ss_pred hhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993 566 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN---KEQESLIDIFAEERDRREREEENLRKKIKDASD 642 (666)
Q Consensus 566 ~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~---keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~ 642 (666)
+..|-.+++.+|...++++..+.+++..++.++...+....... +.=++-++.|.++.....+|-..|++++++.-.
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 158 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSRE 158 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666777777777776666666666666665554443333 333444566666666666666666666665555
Q ss_pred HHHHHHHHHhh
Q 005993 643 TIQDLLDKIKL 653 (666)
Q Consensus 643 ~i~~~~~~~~~ 653 (666)
.++++...+..
T Consensus 159 ~~~~~~~~~~~ 169 (191)
T PF04156_consen 159 EVQELRSQLER 169 (191)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 35
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=89.44 E-value=3.7 Score=49.20 Aligned_cols=94 Identities=27% Similarity=0.413 Sum_probs=63.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHH-HH------------------HhhhcHHHHHHHHHHHHHHHHHHHHHHHH------
Q 005993 563 LGQLKQENHELKKRLEKKEGELQE-ER------------------ERCRSLEAQLKVMQQTIEELNKEQESLID------ 617 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~-e~------------------~~~~~l~~~~~~~~~~~~~~~keq~~li~------ 617 (666)
+.-|+-||..|+.||.-+...|+. |+ -.|.+|+.||+|..+.+|.+...+|.|+.
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK 468 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence 777999999999999888887743 44 24567788887766665555544444433
Q ss_pred --------HHH-------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 618 --------IFA-------EERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 618 --------~f~-------eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
+|- |-+.-.|.|-.+++.-+++|.-..+.+-=+|.+.|+
T Consensus 469 ~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sek 522 (861)
T PF15254_consen 469 EENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEK 522 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 322 224455666667777777888888887777776664
No 36
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=89.42 E-value=4.2 Score=50.22 Aligned_cols=99 Identities=19% Similarity=0.356 Sum_probs=68.6
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD----------------- 624 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~----------------- 624 (666)
-|++|+.|...++++|..+++.+..+++-++.|.++++..+.+|..-++|-+++-.-|.+-+.
T Consensus 449 ~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~ 528 (1041)
T KOG0243|consen 449 QIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEE 528 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388888898999999999988887677666666666666666665555555544444333222
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 005993 625 -RREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTPS 661 (666)
Q Consensus 625 -~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~~~~~ 661 (666)
.+|+ ...||.-+++|..-++.|.++|....+.-.+|
T Consensus 529 ~l~~~-a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n 565 (1041)
T KOG0243|consen 529 KLVDR-ATKLRRSLEESQDDLSSLFEKLDRKDRLDDDN 565 (1041)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Confidence 3344 56788889999999999999988665544433
No 37
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=89.25 E-value=4 Score=51.25 Aligned_cols=98 Identities=30% Similarity=0.440 Sum_probs=79.8
Q ss_pred hhhhhhhhhhHHHHHHHHhHHh----------HHHHHH-------hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 562 NLGQLKQENHELKKRLEKKEGE----------LQEERE-------RCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~----------~~~e~~-------~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~ 624 (666)
.|.+|+++...|.++|...++. ++.+.. ....|.+++.++++++.++..+...++..+...|.
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 851 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRK 851 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888889999999988888776 233334 48899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 005993 625 RREREEENLRKKIKDASDTIQDLLDKIKLLEKMKT 659 (666)
Q Consensus 625 ~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~~~ 659 (666)
+-+++...+++.++.+...+..|..-+..+.....
T Consensus 852 ~le~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~ 886 (1201)
T PF12128_consen 852 ELEEELKALEEQLEQLEEQLRRLRDLLEKLAELSE 886 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 99999999999998888777765555554444433
No 38
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.03 E-value=3 Score=48.42 Aligned_cols=94 Identities=29% Similarity=0.467 Sum_probs=68.2
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q 005993 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKV--------------MQQTIEELNKEQESLIDIFAEER 623 (666)
Q Consensus 558 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~--------------~~~~~~~~~keq~~li~~f~eer 623 (666)
.++-.|.+|++|+.+||.++.+.+..+...+++-+.++..|-+ ++-.+..+.+|+.-|.+-+..-|
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3455699999999999999999998877666555544444333 33344556778888888888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005993 624 DRREREEENLRKKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 624 ~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~ 655 (666)
...|+|- .||. |+.+.+|+|++.|+-+.
T Consensus 190 ~~ld~Et-llr~---d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 190 KQLDDET-LLRV---DLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHH-HHHH---HHHhHHHHHHHHHHHHH
Confidence 8888774 3332 67789999999988654
No 39
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.87 E-value=3.4 Score=50.98 Aligned_cols=88 Identities=28% Similarity=0.460 Sum_probs=61.2
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhH----H---HHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGEL----Q---EER-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRR---ER 628 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~----~---~e~-~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~---~~ 628 (666)
...|.++|++-..|++.+...++++ . .|+ +|.+.|+.+++.++-++..|..|++-+..-..++..++ ..
T Consensus 364 ~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~ 443 (1074)
T KOG0250|consen 364 ENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEG 443 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3347777777777777776666654 2 222 88899999999999999999999988887665554444 34
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005993 629 EEENLRKKIKDASDTIQDL 647 (666)
Q Consensus 629 e~~~lr~kl~~~~~~i~~~ 647 (666)
+.-.||+|+..-+.+|++|
T Consensus 444 ~i~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 444 EILQLRKKIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666554
No 40
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=88.45 E-value=0.47 Score=55.72 Aligned_cols=74 Identities=14% Similarity=0.212 Sum_probs=47.8
Q ss_pred ccccchhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccc------cccccCCcccccccccCCeEEEE
Q 005993 10 SNSKMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAAN------TIGQYGNGFKTSTMRLGADVIVF 83 (666)
Q Consensus 10 ~~a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~------~IGrYGnGfKTgSMRLGkdviVf 83 (666)
|+|.-+.+.++ -+|-..|.|.|||+||+++++.-|..=-...|-.... ++|==|--| +|.+--.+++|-
T Consensus 38 AGAt~I~I~ve---~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~~~~DL~~I~TlGFRGEAL--~SIasVsrlti~ 112 (638)
T COG0323 38 AGATRIDIEVE---GGGLKLIRVRDNGSGIDKEDLPLALLRHATSKIASLEDLFRIRTLGFRGEAL--ASIASVSRLTIT 112 (638)
T ss_pred cCCCEEEEEEc---cCCccEEEEEECCCCCCHHHHHHHHhhhccccCCchhHHHHhhccCccHHHH--HHHHhhheeEEE
Confidence 44544444443 5678889999999999999998888433444433322 233333333 555566899999
Q ss_pred eeecC
Q 005993 84 SCCCG 88 (666)
Q Consensus 84 SK~~g 88 (666)
||+.+
T Consensus 113 Srt~~ 117 (638)
T COG0323 113 SRTAE 117 (638)
T ss_pred eecCC
Confidence 99654
No 41
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=88.35 E-value=5 Score=38.17 Aligned_cols=62 Identities=26% Similarity=0.321 Sum_probs=42.6
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 621 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e 621 (666)
...+..|..+|.+|-++...++..|..-+..+..+-..+..++.+..++.++|..+..-|+-
T Consensus 33 ~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~ 94 (150)
T PF07200_consen 33 QQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSP 94 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 44577788899999998888888877777666666677777777777777777776666654
No 42
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=88.12 E-value=0.42 Score=39.47 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=43.5
Q ss_pred hcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccc---cccccCCeEEEE
Q 005993 16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT---STMRLGADVIVF 83 (666)
Q Consensus 16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKT---gSMRLGkdviVf 83 (666)
.+.|....-.+...+.|.|+|.||+++.+..++..+++... .....+++|.||+. -..+++.++.+-
T Consensus 26 ~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~~~~~~~~~g~~~~~ 95 (111)
T smart00387 26 RITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIVKKLVELHGGEISVE 95 (111)
T ss_pred eEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHHHHHHHHcCCEEEEE
Confidence 34444433445678999999999999999988866654432 22345678999873 233355554443
No 43
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.98 E-value=3.8 Score=42.89 Aligned_cols=68 Identities=24% Similarity=0.326 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHhHHhHHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005993 569 ENHELKKRLEKKEGELQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDA 640 (666)
Q Consensus 569 e~~~~~~~~~~~~~~~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~ 640 (666)
+...+||++....+.|+.+. +.+..|+.++++.|..|+.+.+|.- .+-|+++++-.|...|++++.+-
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s----~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS----RLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhchhHHHHHHHHHHHh
Confidence 34456666655555444333 3444455555555556666655554 35688999999999999998754
No 44
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=87.85 E-value=3.9 Score=47.94 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=29.5
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTI 644 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i 644 (666)
+....++.++++++++++++..+..+.--.+.++|+.-..+.+.++..++++...+
T Consensus 230 ~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 230 QEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554444444555666665555555555555444433
No 45
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=87.78 E-value=3.7 Score=47.55 Aligned_cols=79 Identities=23% Similarity=0.415 Sum_probs=43.2
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 642 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~ 642 (666)
..+|.++..+|.+++...++.+.....-...++.+++++.++++++.++|..+.+...+=| .+|...|++|+....
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lr----k~E~eAr~kL~~~~~ 425 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLR----KDELEAREKLERYRN 425 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4444444444444444444444333334556667777777778888888777766655433 334444555554444
Q ss_pred HHH
Q 005993 643 TIQ 645 (666)
Q Consensus 643 ~i~ 645 (666)
++.
T Consensus 426 ~L~ 428 (569)
T PRK04778 426 KLH 428 (569)
T ss_pred HHH
Confidence 443
No 46
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=87.67 E-value=0.38 Score=55.22 Aligned_cols=67 Identities=27% Similarity=0.269 Sum_probs=52.8
Q ss_pred hhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccc---ccccccCCeEEEEeee
Q 005993 15 LQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCC 86 (666)
Q Consensus 15 ~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfK---TgSMRLGkdviVfSK~ 86 (666)
+.+.+-+-+..+.-.+.|.|+|+||+++.+.++...|+|.|. -+.-|+||. ..-=++|-++.|-+..
T Consensus 450 k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~-----~~~rGiGL~Lvkq~V~~~~G~I~~~s~~ 519 (537)
T COG3290 450 KEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN-----TGGRGIGLYLVKQLVERLGGSIEVESEK 519 (537)
T ss_pred cEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHhcCccccC-----CCCCchhHHHHHHHHHHcCceEEEeeCC
Confidence 444444567888889999999999999999999999999884 345588875 5556778888888863
No 47
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=87.41 E-value=6.2 Score=48.05 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=16.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCMSLG 51 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~msfG 51 (666)
++..+.+--||.| -..+..||.|+
T Consensus 23 ~~~~~i~G~NGsG--KS~ildAi~~~ 46 (1164)
T TIGR02169 23 KGFTVISGPNGSG--KSNIGDAILFA 46 (1164)
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHH
Confidence 4456667788888 44567777663
No 48
>PRK10604 sensor protein RstB; Provisional
Probab=87.12 E-value=0.82 Score=49.90 Aligned_cols=62 Identities=16% Similarity=0.300 Sum_probs=43.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccc---ccccccCCeEEEEeeec
Q 005993 26 SFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCCC 87 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfK---TgSMRLGkdviVfSK~~ 87 (666)
+.-.|.|.|||.||+++++.+...-.+.........-|.+|.||- ...-.+|.++.|-+...
T Consensus 348 ~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~ 412 (433)
T PRK10604 348 NQACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDESEL 412 (433)
T ss_pred CEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHHHHHHHHHCCCEEEEEecCC
Confidence 445799999999999999998886544332111223567899984 44556778888877643
No 49
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.11 E-value=7.4 Score=40.93 Aligned_cols=80 Identities=31% Similarity=0.466 Sum_probs=50.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 642 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~ 642 (666)
+..++.|+.+++..+..++.++..=..++.+|+.++.+++..+....+. |...-...+.|-..||..+..-..
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~-------~~~~i~~le~el~~l~~~~~~~~~ 283 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREE-------YQAEIAELEEELAELREEMARQLR 283 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHH-------HHHhhhccchhHHHHHHHHHHHHH
Confidence 5566666666666666666666665566666666666666655543333 333444566667777777777777
Q ss_pred HHHHHHH
Q 005993 643 TIQDLLD 649 (666)
Q Consensus 643 ~i~~~~~ 649 (666)
.-|+||+
T Consensus 284 ey~~Ll~ 290 (312)
T PF00038_consen 284 EYQELLD 290 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777776
No 50
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=87.05 E-value=6.2 Score=46.25 Aligned_cols=87 Identities=22% Similarity=0.316 Sum_probs=58.4
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 573 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 573 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
+.+++...+..+..-..+...++.++..++.+++++.++.+.|-+.|..+--.+.+|.+.|+++++.+-....+...+++
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444345566666777777777777777777777777777777777777888888877777777777776
Q ss_pred hhhhcCC
Q 005993 653 LLEKMKT 659 (666)
Q Consensus 653 ~~~~~~~ 659 (666)
.+-.-..
T Consensus 287 ~l~~~~~ 293 (650)
T TIGR03185 287 ELAADPL 293 (650)
T ss_pred HHhcccC
Confidence 5543333
No 51
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.12 E-value=2.3 Score=44.11 Aligned_cols=45 Identities=29% Similarity=0.485 Sum_probs=20.7
Q ss_pred hhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 005993 567 KQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 611 (666)
Q Consensus 567 ~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke 611 (666)
..||.++++.+.+++++++..-.+.+.++++...+++|.|++++|
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~E 194 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDE 194 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 344444444444444444444444444444444444444444444
No 52
>PRK11637 AmiB activator; Provisional
Probab=86.11 E-value=9.1 Score=42.59 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=7.8
Q ss_pred hhhhhhhhhHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEK 579 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~ 579 (666)
|++++++..+++..|..
T Consensus 49 l~~l~~qi~~~~~~i~~ 65 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQ 65 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 53
>PF15294 Leu_zip: Leucine zipper
Probab=85.97 E-value=7.9 Score=41.61 Aligned_cols=45 Identities=36% Similarity=0.500 Sum_probs=34.8
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH
Q 005993 559 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ 603 (666)
Q Consensus 559 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~ 603 (666)
+..-|..|+.||..||+||+..|...-.=++-...|+.+|.++|.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455699999999999999999998865555555666666666665
No 54
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=85.60 E-value=7.7 Score=44.40 Aligned_cols=85 Identities=20% Similarity=0.286 Sum_probs=53.4
Q ss_pred cCccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005993 554 LSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENL 633 (666)
Q Consensus 554 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~l 633 (666)
-+...|.|++.++ .+++.+|..++.+=..-++.|+.|..|..++-++|.. .++-||.+-.+|.+.|
T Consensus 56 TP~DTlrTlva~~----k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~----------av~~~~~~~~~~~~ql 121 (472)
T TIGR03752 56 TPADTLRTLVAEV----KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ----------AVQSETQELTKEIEQL 121 (472)
T ss_pred CccchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH----------HHHhhhHHHHHHHHHH
Confidence 3444456666554 5677777766655433334444455555444444443 3455677777778888
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 005993 634 RKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 634 r~kl~~~~~~i~~~~~~~~ 652 (666)
...+......|++|..||.
T Consensus 122 ~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 122 KSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888888888899988885
No 55
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=85.50 E-value=12 Score=37.82 Aligned_cols=62 Identities=29% Similarity=0.434 Sum_probs=44.7
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHH------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEER------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 621 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e 621 (666)
...+..|+++..++++++...++.+..+. +.+..|.+++++++++++++.+|-+++.+.=.+
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~ 135 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPE 135 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 44577778888888888887777775544 566677788888888888888887766554333
No 56
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=85.41 E-value=0.54 Score=50.21 Aligned_cols=71 Identities=15% Similarity=0.064 Sum_probs=46.3
Q ss_pred hhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccccc---ccccCCeEEEEeee
Q 005993 15 LQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS---TMRLGADVIVFSCC 86 (666)
Q Consensus 15 ~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTg---SMRLGkdviVfSK~ 86 (666)
..+.|....-.+...|.|.|||.||+++++.+.+.-+++.+.. ...-+..|.||..+ ...+|..+.|.+..
T Consensus 388 ~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~~~~~~~GlGL~i~~~~~~~~~G~i~i~s~~ 461 (475)
T PRK11100 388 GTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFERFYSLPRP-ANGRKSTGLGLAFVREVARLHGGEVTLRNRP 461 (475)
T ss_pred CEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-CCCCCCcchhHHHHHHHHHHCCCEEEEEEcC
Confidence 3445544344567789999999999999999999766554321 12234567887642 23456677777764
No 57
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=85.00 E-value=16 Score=35.70 Aligned_cols=91 Identities=24% Similarity=0.337 Sum_probs=52.6
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 642 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~ 642 (666)
|+.-+.+..+|+.++..+|.+|+-=-...-.++.+.+++++-++++.-+ |...+.+|++-..|-.+||.--+.--.
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~e----l~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEE----LEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566678888888888888887433333444555555555555554433 344455555555555555555555555
Q ss_pred HHHHHHHHHhhhhhc
Q 005993 643 TIQDLLDKIKLLEKM 657 (666)
Q Consensus 643 ~i~~~~~~~~~~~~~ 657 (666)
..|..-++|..|+..
T Consensus 88 ~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 88 ELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555533
No 58
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=84.98 E-value=1 Score=53.21 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=44.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHh-cCCCCCCCc-cccccccCCcccccc----cccCCeEEEEeeec
Q 005993 28 HCICFADNGGGMNPDKMRHCMS-LGYSAKSKA-ANTIGQYGNGFKTST----MRLGADVIVFSCCC 87 (666)
Q Consensus 28 ~~L~I~DDG~GMd~~el~~~ms-fG~s~k~~~-~~~IGrYGnGfKTgS----MRLGkdviVfSK~~ 87 (666)
..|.|.|||.||+++.+..+.. |=..+|... ....|..|.|+.++. +..|..+.|.|+..
T Consensus 73 ~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g 138 (659)
T PRK14867 73 YKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTG 138 (659)
T ss_pred EEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcC
Confidence 4599999999999999999884 333333322 246788999998655 45688888988864
No 59
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=84.61 E-value=1.2 Score=36.13 Aligned_cols=60 Identities=18% Similarity=0.138 Sum_probs=40.7
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccccc---ccccCCeEEEEeee
Q 005993 25 WSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS---TMRLGADVIVFSCC 86 (666)
Q Consensus 25 ~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTg---SMRLGkdviVfSK~ 86 (666)
.+...+.|.|+|.||++..+..+.... .+.......+.+|.||+.+ .-++|..+.+-+..
T Consensus 31 ~~~~~v~i~d~g~g~~~~~~~~~~~~~--~~~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~ 93 (103)
T cd00075 31 GDHLEIRVEDNGPGIPEEDLERIFERF--SDGSRSRKGGGTGLGLSIVKKLVELHGGRIEVESEP 93 (103)
T ss_pred CCEEEEEEEeCCCCCCHHHHHHHhhhh--hcCCCCCCCCccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 345678899999999999988877532 1112234567889999854 23345677776654
No 60
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.55 E-value=13 Score=42.41 Aligned_cols=66 Identities=23% Similarity=0.337 Sum_probs=27.5
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~ 654 (666)
.|+..|.+.+...++++++...+...||.=..--+..-...+|.+.+-+..--..|+||-|||+-+
T Consensus 382 ~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 382 RKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444444444444444433333333333222222222223333222222233467777776643
No 61
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=84.47 E-value=3.4 Score=46.47 Aligned_cols=80 Identities=30% Similarity=0.422 Sum_probs=52.5
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHhHHHHH-HhhhcHHH----------HH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005993 561 ANLGQLKQENHELKKRLEKKEGELQEER-ERCRSLEA----------QL-KVMQQTIEELNKEQESLIDIFAEERDRRER 628 (666)
Q Consensus 561 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~-~~~~~l~~----------~~-~~~~~~~~~~~keq~~li~~f~eer~~~~~ 628 (666)
..++||++|-..|..-|..-+|=+...+ .|.+.||. || .++-+--.++.+|||+|++-+=---|.-++
T Consensus 136 rkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ 215 (552)
T KOG2129|consen 136 RKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQ 215 (552)
T ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3499999888888544443333222222 33333332 22 223333456889999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 005993 629 EEENLRKKIKDA 640 (666)
Q Consensus 629 e~~~lr~kl~~~ 640 (666)
|..-|.+||.+-
T Consensus 216 ekr~Lq~KlDqp 227 (552)
T KOG2129|consen 216 EKRYLQKKLDQP 227 (552)
T ss_pred HHHHHHHHhcCc
Confidence 999999999643
No 62
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=84.44 E-value=8.8 Score=33.02 Aligned_cols=61 Identities=23% Similarity=0.342 Sum_probs=45.6
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 592 RSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 592 ~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
+.|+.+++.+.+-.+++..|...|-.-... -..|-..|..|...|.+-|..++.+|+++|.
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~----~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKT----WREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 467788888888777777777766433222 2234456999999999999999999999885
No 63
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=84.34 E-value=33 Score=34.19 Aligned_cols=42 Identities=29% Similarity=0.471 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005993 604 TIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQ 645 (666)
Q Consensus 604 ~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~ 645 (666)
.-+-+-.|++.|-.-|-+|+.+.-+=|+....|....-.+||
T Consensus 88 EE~Rl~rere~~q~~~E~E~~~~~~KEe~~~~k~~~l~e~~q 129 (157)
T PF15236_consen 88 EEERLAREREELQRQFEEEQRKQREKEEEQTRKTQELYEAMQ 129 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467778888888888887766666666666665555554
No 64
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=84.34 E-value=15 Score=42.61 Aligned_cols=99 Identities=24% Similarity=0.366 Sum_probs=78.5
Q ss_pred hhhhhhhhh---hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHH
Q 005993 562 NLGQLKQEN---HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRER---EEENLRK 635 (666)
Q Consensus 562 ~~~~~~~e~---~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~---e~~~lr~ 635 (666)
++|+|++-| .++.|-|.++..++.+-.+.+-+|..||-++|+|+..+--|-|.|..++.+-.|+.++ |++.|..
T Consensus 203 ~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleD 282 (596)
T KOG4360|consen 203 CVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELED 282 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 388888877 4677888999999988889999999999999999999999999999999888887765 6667777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCC
Q 005993 636 KIKDASDTIQDLLDKIKLLEKMKTP 660 (666)
Q Consensus 636 kl~~~~~~i~~~~~~~~~~~~~~~~ 660 (666)
|.-|-....-+--|.|+.++.--.|
T Consensus 283 kyAE~m~~~~EaeeELk~lrs~~~p 307 (596)
T KOG4360|consen 283 KYAECMQMLHEAEEELKCLRSCDAP 307 (596)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCc
Confidence 7766665555555666666543333
No 65
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=84.22 E-value=8 Score=43.44 Aligned_cols=97 Identities=18% Similarity=0.355 Sum_probs=50.9
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE------ERDRREREEENLRKK 636 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e------er~~~~~e~~~lr~k 636 (666)
++-+++.-...++.|.++. +....|+.-.|..+..+++.+++.+.+|+-.+-..+.. +++.--+|-..|+++
T Consensus 4 ~k~ir~n~~~v~~~l~~R~--~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~ 81 (425)
T PRK05431 4 IKLIRENPEAVKEALAKRG--FPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEE 81 (425)
T ss_pred HHHHHhCHHHHHHHHHhcC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHH
Confidence 4556555556677777762 11224444455555555555555555555544444443 222233344556666
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCc
Q 005993 637 IKDASDTIQDLLDKIKLLEKMKTPSI 662 (666)
Q Consensus 637 l~~~~~~i~~~~~~~~~~~~~~~~~~ 662 (666)
|++.-..+.++-+++..+- ++.||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~-~~iPN~ 106 (425)
T PRK05431 82 IKALEAELDELEAELEELL-LRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 6666666666666665533 555654
No 66
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=84.21 E-value=5.8 Score=49.61 Aligned_cols=69 Identities=26% Similarity=0.430 Sum_probs=42.6
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhh---------HHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 584 LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF----AEERDRR---------EREEENLRKKIKDASDTIQDLLDK 650 (666)
Q Consensus 584 ~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f----~eer~~~---------~~e~~~lr~kl~~~~~~i~~~~~~ 650 (666)
+..|.++.+.|++++.+.+..++.+.+....+-|.. ++.+.-. -.++..||+..++-+..||++++.
T Consensus 503 ~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~ 582 (1317)
T KOG0612|consen 503 LSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEE 582 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhc
Confidence 444557777777777777777777655554443221 1111111 123567888888999999988884
Q ss_pred Hh
Q 005993 651 IK 652 (666)
Q Consensus 651 ~~ 652 (666)
.+
T Consensus 583 ~~ 584 (1317)
T KOG0612|consen 583 NR 584 (1317)
T ss_pred cc
Confidence 43
No 67
>PRK04863 mukB cell division protein MukB; Provisional
Probab=84.15 E-value=3.2 Score=53.38 Aligned_cols=100 Identities=23% Similarity=0.358 Sum_probs=64.7
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHH-------------------HHHHHH
Q 005993 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQ-------------------ESLIDI 618 (666)
Q Consensus 558 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq-------------------~~li~~ 618 (666)
.|+.-|++++++...+++.+.+.+..+.+-..+-+++...+++++++++++..+- +-|-.-
T Consensus 989 ~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~ 1068 (1486)
T PRK04863 989 KLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHAR 1068 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHHH
Confidence 3555667777777777777777666654444444556666665555555554433 333344
Q ss_pred HHHHHhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 005993 619 FAEERDRR----------EREEENLRKKIKDASDTIQDLLDKIKLLEKM 657 (666)
Q Consensus 619 f~eer~~~----------~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~ 657 (666)
++.-|.|| ..|-++|.++|+.+.+.+.++.+.|+.+...
T Consensus 1069 l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~ 1117 (1486)
T PRK04863 1069 LSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAG 1117 (1486)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 3577899999999999999999888876544
No 68
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=84.10 E-value=6.4 Score=43.31 Aligned_cols=86 Identities=29% Similarity=0.360 Sum_probs=44.1
Q ss_pred hhhhhhhhhHHHHHHHHhHHh--------------HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 005993 563 LGQLKQENHELKKRLEKKEGE--------------LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD---- 624 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~--------------~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~---- 624 (666)
.+||+-.|..|++-|-...+. +.+-.+.+..|+-||++++++..|+..|-..|-.-++|++.
T Consensus 101 ~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~ 180 (401)
T PF06785_consen 101 SEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQE 180 (401)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554433332 23333555556666665555555544444444444444433
Q ss_pred -----------------hhHHHHHHHHHHHHHHHHHHHHHH
Q 005993 625 -----------------RREREEENLRKKIKDASDTIQDLL 648 (666)
Q Consensus 625 -----------------~~~~e~~~lr~kl~~~~~~i~~~~ 648 (666)
.|..---+|+.|..|-...|..||
T Consensus 181 L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLL 221 (401)
T PF06785_consen 181 LNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLL 221 (401)
T ss_pred HHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334456667666666666665
No 69
>PLN02320 seryl-tRNA synthetase
Probab=83.95 E-value=13 Score=43.04 Aligned_cols=97 Identities=15% Similarity=0.307 Sum_probs=58.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE-----ERDRREREEENLRKKI 637 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e-----er~~~~~e~~~lr~kl 637 (666)
++.+++.-..+++.|.++--++. +|..-.|.++...++++++++..|+-++..-+.+ ++..--+|...|+++|
T Consensus 69 ~k~ir~n~~~v~~~l~~R~~~~~--vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i 146 (502)
T PLN02320 69 FKWIRDNKEAVAINIRNRNSNAN--LELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGL 146 (502)
T ss_pred HHHHHhCHHHHHHHHHhcCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Confidence 67777766777888887753322 5555556666666666666666666666555554 2222223556666677
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCc
Q 005993 638 KDASDTIQDLLDKIKLLEKMKTPSI 662 (666)
Q Consensus 638 ~~~~~~i~~~~~~~~~~~~~~~~~~ 662 (666)
++.-..++++-+++..+- +..||.
T Consensus 147 ~~le~~~~~~~~~l~~~~-l~iPN~ 170 (502)
T PLN02320 147 VTLEEDLVKLTDELQLEA-QSIPNM 170 (502)
T ss_pred HHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 666666666666666533 555654
No 70
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=83.55 E-value=15 Score=42.92 Aligned_cols=90 Identities=30% Similarity=0.459 Sum_probs=49.2
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL---IDIFAEERDRREREEENLRKKIKD 639 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l---i~~f~eer~~~~~e~~~lr~kl~~ 639 (666)
+....+|+.+|..-...++++...-......|+++|...+++.+.+..+++.+ .+...+|++--..+.+.++.++++
T Consensus 145 lE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~ 224 (546)
T PF07888_consen 145 LEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRE 224 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555443333555556666666555555554444433 344556666655566666666666
Q ss_pred HHHHHHHHHHHHh
Q 005993 640 ASDTIQDLLDKIK 652 (666)
Q Consensus 640 ~~~~i~~~~~~~~ 652 (666)
--..|+.|..++.
T Consensus 225 LEedi~~l~qk~~ 237 (546)
T PF07888_consen 225 LEEDIKTLTQKEK 237 (546)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655553
No 71
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.49 E-value=14 Score=37.61 Aligned_cols=81 Identities=30% Similarity=0.478 Sum_probs=48.5
Q ss_pred hhhhhhhhhhHHHHHHHHhHHh---HHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGE---LQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEE 631 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~---~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~ 631 (666)
.+..+.+||..|+|=|.+.+++ |++++ ...+.+..++..++++|..+..|.+.|-.-|..= .+|-.
T Consensus 49 ~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kl----e~Erd 124 (201)
T PF13851_consen 49 LMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKL----EQERD 124 (201)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 3445555666666666655554 33333 2234567777888888888888888887777643 23334
Q ss_pred HHHHHHHHHHHHHHH
Q 005993 632 NLRKKIKDASDTIQD 646 (666)
Q Consensus 632 ~lr~kl~~~~~~i~~ 646 (666)
.|..|...|...+|.
T Consensus 125 eL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 125 ELYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 466666655555543
No 72
>PHA02562 46 endonuclease subunit; Provisional
Probab=83.41 E-value=13 Score=42.07 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=15.4
Q ss_pred cceEEEEECCCCCCHHHHHHHHhc
Q 005993 27 FHCICFADNGGGMNPDKMRHCMSL 50 (666)
Q Consensus 27 ~~~L~I~DDG~GMd~~el~~~msf 50 (666)
+..+.+-+||.| -..+..||.|
T Consensus 28 g~~~i~G~NG~G--KStll~aI~~ 49 (562)
T PHA02562 28 KKTLITGKNGAG--KSTMLEALTF 49 (562)
T ss_pred CEEEEECCCCCC--HHHHHHHHHH
Confidence 456777788888 4667777753
No 73
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=83.40 E-value=12 Score=45.19 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=11.6
Q ss_pred HHhhcCCCCCHHHHHHHHhh
Q 005993 145 TIVQWSPFSSEADLLHQFNL 164 (666)
Q Consensus 145 iIlkySPF~sE~eLl~Qfd~ 164 (666)
.+...+|+.+..++...++.
T Consensus 30 ~l~~l~P~~~~~~i~~~l~~ 49 (782)
T PRK00409 30 KVLQLDPETDFEEVEELLEE 49 (782)
T ss_pred HHHcCCCCCCHHHHHHHHHH
Confidence 44556677666665555544
No 74
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=83.32 E-value=10 Score=45.74 Aligned_cols=14 Identities=14% Similarity=-0.009 Sum_probs=5.4
Q ss_pred CCCCCHHHHHHHHh
Q 005993 150 SPFSSEADLLHQFN 163 (666)
Q Consensus 150 SPF~sE~eLl~Qfd 163 (666)
.|..+..++...++
T Consensus 35 ~P~~~~~~i~~~l~ 48 (771)
T TIGR01069 35 KPPKSVEESKEIII 48 (771)
T ss_pred CCCCCHHHHHHHHH
Confidence 34444333333333
No 75
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=83.29 E-value=0.89 Score=48.68 Aligned_cols=70 Identities=13% Similarity=0.053 Sum_probs=45.0
Q ss_pred cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccccc---ccccCCeEEEEeee
Q 005993 17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS---TMRLGADVIVFSCC 86 (666)
Q Consensus 17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTg---SMRLGkdviVfSK~ 86 (666)
++|....-.+.-.|.|.|||.||+++.+.+...-.++........-+.+|.||.-+ ...+|..+.|-+..
T Consensus 373 i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~ 445 (461)
T PRK09470 373 IEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSP 445 (461)
T ss_pred EEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHHHHHHHHCCCEEEEEECC
Confidence 34443223345579999999999999998887544443321223456789998642 34567777777664
No 76
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=83.21 E-value=6.6 Score=42.93 Aligned_cols=71 Identities=30% Similarity=0.508 Sum_probs=54.1
Q ss_pred HHHHHhhhcHHHHHH----HHHHHHHHHH--------------HHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHH
Q 005993 585 QEERERCRSLEAQLK----VMQQTIEELN--------------KEQESLIDIFAEERDRR---EREEENLRKKIKDASDT 643 (666)
Q Consensus 585 ~~e~~~~~~l~~~~~----~~~~~~~~~~--------------keq~~li~~f~eer~~~---~~e~~~lr~kl~~~~~~ 643 (666)
+.|+|.-|...+||+ .++++.++++ +++.+|+.++++-|++- ..|.+.||.||.||-.-
T Consensus 22 q~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 22 QSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 666777777777775 4455677777 58889999998877653 45778999999999999
Q ss_pred HHHHHHHHhhhh
Q 005993 644 IQDLLDKIKLLE 655 (666)
Q Consensus 644 i~~~~~~~~~~~ 655 (666)
|+=|-+++...+
T Consensus 102 ~KlLR~~la~~r 113 (319)
T PF09789_consen 102 IKLLREKLARQR 113 (319)
T ss_pred HHHHHHHHHhhh
Confidence 988888887654
No 77
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.15 E-value=9.1 Score=39.30 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=23.7
Q ss_pred hhhhhHHHHHHHHhHHhHHH---HH-HhhhcHHHHHHHHHHHHHHHHHH
Q 005993 567 KQENHELKKRLEKKEGELQE---ER-ERCRSLEAQLKVMQQTIEELNKE 611 (666)
Q Consensus 567 ~~e~~~~~~~~~~~~~~~~~---e~-~~~~~l~~~~~~~~~~~~~~~ke 611 (666)
=....++++||.++|.++.. ++ +-...+..+..++++++++++++
T Consensus 85 Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 133 (206)
T PRK10884 85 LSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSV 133 (206)
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35567888888877766532 22 12222334444455555554433
No 78
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=82.88 E-value=11 Score=47.54 Aligned_cols=60 Identities=15% Similarity=0.366 Sum_probs=41.3
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 559 LGANLGQLKQENHELKKRLEKKEGELQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDI 618 (666)
Q Consensus 559 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~ 618 (666)
|+.+-.++...+.+.++++..++..+..|| +....|..+++.++++|+...+.+.-+++-
T Consensus 734 i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY 800 (1201)
T PF12128_consen 734 IEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEY 800 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334444555566666677777777777777 567778888888888888777776666553
No 79
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=82.85 E-value=34 Score=30.36 Aligned_cols=81 Identities=15% Similarity=0.279 Sum_probs=41.9
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993 571 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTI--------EELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 642 (666)
Q Consensus 571 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~--------~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~ 642 (666)
..|+.++..++..+..=-+.++.|+.+.+.++++| +.++++...|++-+.+++.++-..-......|.....
T Consensus 10 ~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~ 89 (127)
T smart00502 10 TKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQE 89 (127)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333344444444444444333 4456666777777777776666555555555554444
Q ss_pred HHHHHHHHH
Q 005993 643 TIQDLLDKI 651 (666)
Q Consensus 643 ~i~~~~~~~ 651 (666)
.+..+.+-+
T Consensus 90 ~l~~~~~~~ 98 (127)
T smart00502 90 KLSHAINFT 98 (127)
T ss_pred HHHHHHHHH
Confidence 444444443
No 80
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=82.84 E-value=8.1 Score=40.17 Aligned_cols=69 Identities=32% Similarity=0.394 Sum_probs=41.7
Q ss_pred hhhHHHHHHHH---hHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHH
Q 005993 569 ENHELKKRLEK---KEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA---EERDRREREEENLRKKI 637 (666)
Q Consensus 569 e~~~~~~~~~~---~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~---eer~~~~~e~~~lr~kl 637 (666)
||..+|+-+.. +|++.....++-+.|+++++.-+.+||.+++.-++|.--+. -|=||--.|-++||+.+
T Consensus 135 ~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 135 ENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 66677666654 34445555566777888888888888887777666654433 24444444444444443
No 81
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=82.84 E-value=1.1 Score=47.66 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=45.6
Q ss_pred hcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccc---cccCCeEEEEe
Q 005993 16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTST---MRLGADVIVFS 84 (666)
Q Consensus 16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgS---MRLGkdviVfS 84 (666)
.++|.+..-.+...|.|.|||.||+++.+.++..-+++.+......-+..|.||..+. -++|-.+.|-+
T Consensus 374 ~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~~~~~~~~~G~~~~~~ 445 (457)
T TIGR01386 374 TITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAIVRSIMEAHGGRASAES 445 (457)
T ss_pred eEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHHHHHHHHHCCCEEEEEe
Confidence 4566554334556899999999999999999886566544221223455788887432 34566676666
No 82
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=82.80 E-value=15 Score=42.67 Aligned_cols=103 Identities=24% Similarity=0.410 Sum_probs=74.7
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhH---HHHHHhhhcHHHHHHHHHHHHHHHH--------------HHHH---HHHHH
Q 005993 559 LGANLGQLKQENHELKKRLEKKEGEL---QEERERCRSLEAQLKVMQQTIEELN--------------KEQE---SLIDI 618 (666)
Q Consensus 559 ~~~~~~~~~~e~~~~~~~~~~~~~~~---~~e~~~~~~l~~~~~~~~~~~~~~~--------------keq~---~li~~ 618 (666)
+...|.+++++|..|+.-|.++..+. ..|.+..+.++.+++++++.++++. ++.+ .=++.
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee 394 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE 394 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34558999999999999999998882 5667777777777777766665322 2222 23456
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hcCCCC
Q 005993 619 FAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE----KMKTPS 661 (666)
Q Consensus 619 f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~----~~~~~~ 661 (666)
+.+++..-....+.||+.-.+|-+.|+.+-.+|+... ++..|.
T Consensus 395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpg 441 (569)
T PRK04778 395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPG 441 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 6777777778888899998999999988888887554 444554
No 83
>PRK10780 periplasmic chaperone; Provisional
Probab=82.67 E-value=15 Score=35.95 Aligned_cols=81 Identities=19% Similarity=0.309 Sum_probs=38.8
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhh---h-cH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERC---R-SL-EAQLKVMQQTIEELNKEQESLIDIFAEERDRREREE-ENLRKK 636 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~---~-~l-~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~-~~lr~k 636 (666)
-++|+.+.......|++++.+++.+.++- . .| +.+.++.+++|....++.......|.++-.+|.+|+ ..+..|
T Consensus 45 ~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~~~qq~~~~~~~e~~~~i~~k 124 (165)
T PRK10780 45 SKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQAFEQDRRRRSNEERNKILTR 124 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666655444221 1 11 122233344444444444444555655554444443 555555
Q ss_pred HHHHHHH
Q 005993 637 IKDASDT 643 (666)
Q Consensus 637 l~~~~~~ 643 (666)
+.+|...
T Consensus 125 i~~ai~~ 131 (165)
T PRK10780 125 IQTAVKS 131 (165)
T ss_pred HHHHHHH
Confidence 5554443
No 84
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.40 E-value=14 Score=39.95 Aligned_cols=41 Identities=32% Similarity=0.384 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 616 IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 616 i~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
|..+..+-.....|-+.|..++++...-+++++++|+.+++
T Consensus 225 i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 225 IEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555556666666666666666667666666654
No 85
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=82.11 E-value=14 Score=36.58 Aligned_cols=72 Identities=29% Similarity=0.434 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHH
Q 005993 569 ENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLR-KKIKDASDTI 644 (666)
Q Consensus 569 e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr-~kl~~~~~~i 644 (666)
|..-++.++...--+|..=.--|+.-|.++.+|+.+.+|.|||-..|+..+-| --.|-|.|| +||++-|.+|
T Consensus 85 Ev~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~e----Lv~eSE~~rmKKLEELsk~i 157 (159)
T PF04949_consen 85 EVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLME----LVSESERLRMKKLEELSKEI 157 (159)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhc
Confidence 33333444433333333222567777888888889999999998888877766 345555665 6788888776
No 86
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=82.01 E-value=14 Score=33.26 Aligned_cols=98 Identities=22% Similarity=0.397 Sum_probs=55.6
Q ss_pred hhhhhhhhhHHHHHHHHhH--HhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKE--GELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKK 636 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~--~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~k 636 (666)
|+.+++--...++.|.++- ...-.++ ++.+.|..++++++.+-.++.|+=-.+...= ++++.--.|-..|+++
T Consensus 4 ik~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk~~ 82 (108)
T PF02403_consen 4 IKLIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELKEE 82 (108)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHHHH
Confidence 5566665556677777663 1222222 5566666666666665555555433222211 4555566677777888
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCc
Q 005993 637 IKDASDTIQDLLDKIKLLEKMKTPSI 662 (666)
Q Consensus 637 l~~~~~~i~~~~~~~~~~~~~~~~~~ 662 (666)
+++.-..+.++-+++..+- +..||+
T Consensus 83 i~~le~~~~~~e~~l~~~l-~~iPNi 107 (108)
T PF02403_consen 83 IKELEEQLKELEEELNELL-LSIPNI 107 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CTS---
T ss_pred HHHHHHHHHHHHHHHHHHH-HcCCCC
Confidence 8777777777777777654 556654
No 87
>PRK09303 adaptive-response sensory kinase; Validated
Probab=81.81 E-value=2.1 Score=46.16 Aligned_cols=60 Identities=13% Similarity=0.074 Sum_probs=42.7
Q ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccc---ccccccCCeEEEEeeec
Q 005993 26 SFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCCC 87 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfK---TgSMRLGkdviVfSK~~ 87 (666)
+.-.|.|.|||.||+++.+.++..-.++.+. ....+.+|.||- ...-.+|..+.|-|...
T Consensus 304 ~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~ 366 (380)
T PRK09303 304 QKVQVSICDTGPGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPG 366 (380)
T ss_pred CEEEEEEEEcCCCCCHHHHHHHccCceeCCC--CCCCCcccccHHHHHHHHHHcCCEEEEEecCC
Confidence 3457999999999999999988865444332 223456899984 34446788888877643
No 88
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=81.81 E-value=17 Score=38.92 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 594 LEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 594 l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
|++|+.+++..-..|.-||+.+.+-|---|...-+-++.|+.-|-..-..-..|-+.|+.||.
T Consensus 57 ~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 57 LETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444556679999999999999999888888887665433333344445555553
No 89
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.80 E-value=22 Score=38.60 Aligned_cols=62 Identities=18% Similarity=0.313 Sum_probs=32.1
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 591 CRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 591 ~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
+..|+.++.+++.++++++++.+. |-.+++-...|--.+.+.+....+.++-+.++|..|++
T Consensus 73 ~~~l~~el~~le~e~~~l~~eE~~----~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 73 REELDQELEELEEELEELDEEEEE----YWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666666666666554443 33334444444444444555555555555555555543
No 90
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=81.01 E-value=34 Score=34.90 Aligned_cols=50 Identities=32% Similarity=0.434 Sum_probs=35.2
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 611 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke 611 (666)
.|+.||+|..++|.+....+..+..=...++.|.+-|+.|++..+++.++
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~ 77 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQ 77 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 69999999999999988888776554455666655555555555555443
No 91
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.86 E-value=8.5 Score=47.03 Aligned_cols=74 Identities=28% Similarity=0.402 Sum_probs=38.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 642 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~ 642 (666)
++||.+.|..||+-|-|+..-.-.| .-.-+.+++.+|..+.|-+-|+- -.|+|..++..|-+
T Consensus 370 fkqlEqqN~rLKdalVrLRDlsA~e-------k~d~qK~~kelE~k~sE~~eL~r-----------~kE~Lsr~~d~aEs 431 (1243)
T KOG0971|consen 370 FKQLEQQNARLKDALVRLRDLSASE-------KQDHQKLQKELEKKNSELEELRR-----------QKERLSRELDQAES 431 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHH-------HHHHHHHHHHHHHHhhHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 5566666666665555443211111 11113344445555555444432 24567777777777
Q ss_pred HHHHHHHHHhhh
Q 005993 643 TIQDLLDKIKLL 654 (666)
Q Consensus 643 ~i~~~~~~~~~~ 654 (666)
+|.||-|||.|.
T Consensus 432 ~iadlkEQVDAA 443 (1243)
T KOG0971|consen 432 TIADLKEQVDAA 443 (1243)
T ss_pred HHHHHHHHHHHh
Confidence 777777777653
No 92
>PRK02224 chromosome segregation protein; Provisional
Probab=80.84 E-value=19 Score=43.36 Aligned_cols=33 Identities=9% Similarity=0.266 Sum_probs=14.6
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 621 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e 621 (666)
.....|.+++..++++++.+.++-+.|-+.+.+
T Consensus 213 ~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~e 245 (880)
T PRK02224 213 SELAELDEEIERYEEQREQARETRDEADEVLEE 245 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433
No 93
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=80.66 E-value=1.6 Score=38.56 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=21.9
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQE 586 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~ 586 (666)
+|..|.+||..||+||++.|++|++
T Consensus 1 li~ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 1 LIHEIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677899999999999999988865
No 94
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=80.48 E-value=6.1 Score=42.93 Aligned_cols=46 Identities=24% Similarity=0.435 Sum_probs=32.7
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 638 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~ 638 (666)
.....|+.+++..+++|+.+.+ ||+.++.|+.|-...-+.|..+++
T Consensus 263 ~e~~~l~~~~~~~~~kl~rA~~----Li~~L~~E~~RW~~~~~~l~~~~~ 308 (344)
T PF12777_consen 263 KEKQELEEEIEETERKLERAEK----LISGLSGEKERWSEQIEELEEQLK 308 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHCCHHHHHCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccHHH----HHhhhcchhhhHHHHHHHHHHHhc
Confidence 3444555555555555555544 899999999999888888877766
No 95
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.35 E-value=5.6 Score=48.51 Aligned_cols=97 Identities=24% Similarity=0.335 Sum_probs=76.2
Q ss_pred cCCCCCccCccccchhhhhhh-------hhhhHHHHHHHHhHHhHH----HHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 005993 547 VNYPEHFLSDCSLGANLGQLK-------QENHELKKRLEKKEGELQ----EERERCRSLEAQLKVMQQTIEELNKEQESL 615 (666)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~-------~e~~~~~~~~~~~~~~~~----~e~~~~~~l~~~~~~~~~~~~~~~keq~~l 615 (666)
++|-.-++.+. ++.|++|| +|.+|++=|+...|..|. .+=++.+.+++.+++.++.|---.||-+-.
T Consensus 950 aegL~~tle~r--e~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efeet 1027 (1243)
T KOG0971|consen 950 AEGLGLTLEDR--ETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEET 1027 (1243)
T ss_pred hhhhhhhHHhh--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666 77787776 467777778877777664 344788889999999999988888999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005993 616 IDIFAEERDRREREEENLRKKIKDASDTIQ 645 (666)
Q Consensus 616 i~~f~eer~~~~~e~~~lr~kl~~~~~~i~ 645 (666)
.|.++-+-+.-+.|.+.|+.+|+--|+-||
T Consensus 1028 mdaLq~di~~lEsek~elKqrl~~~~~k~q 1057 (1243)
T KOG0971|consen 1028 MDALQADIDQLESEKAELKQRLNSQSKKTQ 1057 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhhcccccC
Confidence 999999999999999999999876665544
No 96
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=80.20 E-value=38 Score=32.87 Aligned_cols=50 Identities=20% Similarity=0.377 Sum_probs=28.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQ 612 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq 612 (666)
..+|+..+..|..|...+|.++..=-.|+..|+.+|+.++.+|.+++...
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666654444566666666666665555554433
No 97
>PRK09039 hypothetical protein; Validated
Probab=80.02 E-value=15 Score=40.33 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=21.7
Q ss_pred HHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 574 KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDI 618 (666)
Q Consensus 574 ~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~ 618 (666)
..|+...+++|..++..-...--+++-++++|+.+.+...+|=..
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~ 159 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAA 159 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333343333333333445566666776666655544333
No 98
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=80.01 E-value=1.1 Score=48.39 Aligned_cols=64 Identities=14% Similarity=0.164 Sum_probs=41.9
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccc---cccccCCeEEEEeeec
Q 005993 24 LWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT---STMRLGADVIVFSCCC 87 (666)
Q Consensus 24 ~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKT---gSMRLGkdviVfSK~~ 87 (666)
-.+...+.|.|||.||+++++.+...=.++.+.......|..|.||.. -.-++|-.+.+-+...
T Consensus 381 ~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~ 447 (466)
T PRK10549 381 RDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPF 447 (466)
T ss_pred cCCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCC
Confidence 345567899999999999999887743333322112245667888753 3345677777777643
No 99
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=79.93 E-value=10 Score=35.95 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=61.6
Q ss_pred hhhhhhhhHHHHHHHHhHHhHHHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005993 564 GQLKQENHELKKRLEKKEGELQEER-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKI 637 (666)
Q Consensus 564 ~~~~~e~~~~~~~~~~~~~~~~~e~-~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl 637 (666)
.||+..+.-|+|-+.-+|..|+.=+ |+|--.++-...-||.+|...-.--.+|-+|.-|+++-..|-+.|+.-|
T Consensus 45 qqLreQqk~L~e~i~~LE~RLRaGlCDRC~VtqE~akK~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 45 QQLREQQKTLHENIKVLENRLRAGLCDRCTVTQELAKKKQQEFESSHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4688889999999999888887655 9999888888888889998888888889999999998887776665443
No 100
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.92 E-value=15 Score=46.83 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=45.0
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLL 648 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~ 648 (666)
+.+..|.++++++..+|+.+..+.+.+..-+.+-|.+++.+++.++.++.....++++|-
T Consensus 895 ~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1311)
T TIGR00606 895 TEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIH 954 (1311)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566777778888888888889999999999999999998877666655443
No 101
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=79.78 E-value=9.6 Score=33.34 Aligned_cols=26 Identities=38% Similarity=0.457 Sum_probs=23.4
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQ 585 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~ 585 (666)
+..|..|+.||=.||=|+-=+|+.|+
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55699999999999999999998886
No 102
>PRK09343 prefoldin subunit beta; Provisional
Probab=79.74 E-value=41 Score=31.66 Aligned_cols=83 Identities=18% Similarity=0.345 Sum_probs=54.0
Q ss_pred hhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHh
Q 005993 570 NHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIE-------------------------ELNKEQESLIDIFAEERD 624 (666)
Q Consensus 570 ~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~-------------------------~~~keq~~li~~f~eer~ 624 (666)
...+-..++..+..++.=...+..|+.++.+++..++ ++.++.+.=++.+..+-.
T Consensus 9 ~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik 88 (121)
T PRK09343 9 VQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSR 88 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444454444444555555555555544444 444555556677777888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 625 RREREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 625 ~~~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
+-+..++.|+++|++.-+.|++++.+..
T Consensus 89 ~lekq~~~l~~~l~e~q~~l~~ll~~~~ 116 (121)
T PRK09343 89 TLEKQEKKLREKLKELQAKINEMLSKYY 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888889999999999999999988765
No 103
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=79.74 E-value=29 Score=35.66 Aligned_cols=62 Identities=27% Similarity=0.410 Sum_probs=43.1
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 590 RCRSLEAQLKVMQQTIEELNKEQESL---IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKI 651 (666)
Q Consensus 590 ~~~~l~~~~~~~~~~~~~~~keq~~l---i~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~ 651 (666)
-+++||++-.-+..+-..+++||-+| |..|.||-..--.|-+.|.++.++-......|--||
T Consensus 75 ~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 75 LAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 34445555555555666778888877 578888888888888888888887766666665555
No 104
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.58 E-value=32 Score=37.46 Aligned_cols=41 Identities=29% Similarity=0.326 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 616 IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 616 i~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
|.++.-+-..-..|-+.|+.++++.-.-++++.++|+.+++
T Consensus 220 i~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 220 IMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444556667777777777777777777777775
No 105
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=79.57 E-value=33 Score=37.09 Aligned_cols=12 Identities=17% Similarity=0.301 Sum_probs=6.9
Q ss_pred hhHHHHHHHhhc
Q 005993 225 HSLRSYASILYL 236 (666)
Q Consensus 225 ySLRaYLSILYL 236 (666)
.||..+|.+.=+
T Consensus 14 isL~~FL~~~~I 25 (325)
T PF08317_consen 14 ISLQDFLNMTGI 25 (325)
T ss_pred cCHHHHHHHhCc
Confidence 566666666533
No 106
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=79.46 E-value=21 Score=43.27 Aligned_cols=28 Identities=11% Similarity=-0.002 Sum_probs=21.7
Q ss_pred CCCCcceEEEEECCCCCCHHHHHHHHhcCC
Q 005993 23 SLWSFHCICFADNGGGMNPDKMRHCMSLGY 52 (666)
Q Consensus 23 ~~~G~~~L~I~DDG~GMd~~el~~~msfG~ 52 (666)
+|.+...+.|--||.| -..+..||.|+.
T Consensus 20 ~f~~~~~~i~G~NGsG--KS~ll~ai~~~l 47 (1179)
T TIGR02168 20 NFDKGITGIVGPNGCG--KSNIVDAIRWVL 47 (1179)
T ss_pred EecCCcEEEECCCCCC--hhHHHHHHHHHH
Confidence 3556778899999999 667888887654
No 107
>PF13256 DUF4047: Domain of unknown function (DUF4047)
Probab=79.22 E-value=27 Score=33.51 Aligned_cols=95 Identities=18% Similarity=0.277 Sum_probs=77.0
Q ss_pred cCccccchhhhhhhhhhhHHHHHHHHhHHhHHHHH--HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 005993 554 LSDCSLGANLGQLKQENHELKKRLEKKEGELQEER--ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEE 631 (666)
Q Consensus 554 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~--~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~ 631 (666)
+-.| .| |..|+++-..-++-+.+--|.|..+. +-..-|+.++..-+++.|..--|-++|-.|+.|=-+---|=+|
T Consensus 23 iIFP--kT-I~~L~e~A~qh~~~Il~eye~mk~~~~~~Sie~leq~~~~w~~~rEki~~e~eaLQ~IY~eie~~ynq~qe 99 (125)
T PF13256_consen 23 IIFP--KT-IDTLKEQAEQHKEQILHEYEGMKKKVKVTSIEELEQAIVEWKQGREKIVAEREALQNIYTEIEDYYNQIQE 99 (125)
T ss_pred hccH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445 66 88999999888888888888887777 5566678888999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 005993 632 NLRKKIKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 632 ~lr~kl~~~~~~i~~~~~~~~~~ 654 (666)
||+. .-+..+++++--+|+.
T Consensus 100 ~~k~---~~~~s~kqv~~yvn~g 119 (125)
T PF13256_consen 100 ELKV---NKSESVKQVLQYVNAG 119 (125)
T ss_pred Hhcc---cchHHHHHHHHHHHHh
Confidence 8874 3455677777777754
No 108
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=79.17 E-value=21 Score=44.95 Aligned_cols=62 Identities=27% Similarity=0.488 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993 593 SLEAQLKVMQQTIEELNKEQESLIDIFAEERDRR---EREEENLRKKIKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 593 ~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~---~~e~~~lr~kl~~~~~~i~~~~~~~~~~ 654 (666)
.++.++++++.++++++++=..|-+.+.+-+..+ +.+-..++.++.++...|+.+.++++.+
T Consensus 853 ~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l 917 (1163)
T COG1196 853 ELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEEL 917 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555554444443333 3444445556666666777666666554
No 109
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=79.15 E-value=6.7 Score=47.40 Aligned_cols=97 Identities=28% Similarity=0.354 Sum_probs=58.0
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR-------------- 625 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~-------------- 625 (666)
+..|..|+.+...+++.=...|..|....+..++|+.++.+++..++++...=.+|=+-+.+||..
T Consensus 630 E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~e 709 (769)
T PF05911_consen 630 EQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEE 709 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 444555555555555555555555555555555555555555555555544444444444444322
Q ss_pred ---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 626 ---------------------REREEENLRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 626 ---------------------~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
-+.|-..-..||-|.-.||-.|.-||++|..
T Consensus 710 l~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLksLa~ 761 (769)
T PF05911_consen 710 LERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKSLAT 761 (769)
T ss_pred HHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1224445567888889999999999998863
No 110
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=78.97 E-value=22 Score=44.41 Aligned_cols=56 Identities=29% Similarity=0.417 Sum_probs=47.2
Q ss_pred HhhhcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELN---KEQESLIDIFAEERDRREREEENLRKKIKDASDTI 644 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~---keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i 644 (666)
++-..|.+.+++.+.++++++ ++=|+-|+-+..|=+++|.|-+++|+-+.++-...
T Consensus 295 ek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~ 353 (1074)
T KOG0250|consen 295 EKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREV 353 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 667778888888888999999 88999999999999999999999888776655533
No 111
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=78.96 E-value=20 Score=45.06 Aligned_cols=92 Identities=34% Similarity=0.511 Sum_probs=48.7
Q ss_pred hhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHH
Q 005993 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE---REEENLRKKIKDAS 641 (666)
Q Consensus 565 ~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~---~e~~~lr~kl~~~~ 641 (666)
.|+.+..+|++++.+....+..=..+...++.++.+.+.++++.+.+-..|-+...+.+++.. ++...++.++.++.
T Consensus 401 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1163)
T COG1196 401 ELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLE 480 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333555555555655555666666666666666666555443 33335555666666
Q ss_pred HHHHHHHHHHhhhhh
Q 005993 642 DTIQDLLDKIKLLEK 656 (666)
Q Consensus 642 ~~i~~~~~~~~~~~~ 656 (666)
..++++..++..++.
T Consensus 481 ~~l~~~~~~~~~l~~ 495 (1163)
T COG1196 481 KELSSLEARLDRLEA 495 (1163)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666555555443
No 112
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=78.93 E-value=26 Score=36.80 Aligned_cols=39 Identities=26% Similarity=0.505 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 613 ESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKI 651 (666)
Q Consensus 613 ~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~ 651 (666)
+..|.-+.+++.+++.|.+.|+.+|..|-.....-.+++
T Consensus 88 ~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 88 EAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777889999999999999999998877665544444
No 113
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=78.82 E-value=30 Score=37.76 Aligned_cols=68 Identities=24% Similarity=0.360 Sum_probs=57.1
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRER---EEENLRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~---e~~~lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
+..-+|..|+-++|+++...--|-|-|.-.+.+.++...+ |-..|+.|..|......+.=+.|+.+++
T Consensus 234 EEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 234 EEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4455778888888888888888888888888888877664 8889999999999999999999988764
No 114
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=78.53 E-value=39 Score=34.43 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=11.1
Q ss_pred hhhhhhhhhhHHHHHHHHhHH
Q 005993 562 NLGQLKQENHELKKRLEKKEG 582 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~ 582 (666)
+|.+-.+|..-|+++|.+.++
T Consensus 62 ll~~h~eEvr~Lr~~LR~~q~ 82 (194)
T PF15619_consen 62 LLQRHNEEVRVLRERLRKSQE 82 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555443
No 115
>PRK09039 hypothetical protein; Validated
Probab=78.51 E-value=27 Score=38.29 Aligned_cols=59 Identities=15% Similarity=0.257 Sum_probs=46.3
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 621 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e 621 (666)
|..+++|..+|..+|..+-+.|.=|+.++..|+.+|.+++.+++.+.++.+.|-..+++
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~ 106 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAE 106 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666666666666666678888999999999999999999888888888887764
No 116
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.44 E-value=23 Score=38.57 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=6.3
Q ss_pred HHHHHHHhhhhhc
Q 005993 645 QDLLDKIKLLEKM 657 (666)
Q Consensus 645 ~~~~~~~~~~~~~ 657 (666)
-.|.++++++++.
T Consensus 274 ~~Lk~~~~~Le~l 286 (312)
T smart00787 274 EKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555443
No 117
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=78.40 E-value=25 Score=37.11 Aligned_cols=62 Identities=18% Similarity=0.323 Sum_probs=27.5
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005993 591 CRSLEAQLKVMQQTIEELNKEQESLIDIFA-EERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 591 ~~~l~~~~~~~~~~~~~~~keq~~li~~f~-eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~ 655 (666)
-+.++..++++.++++.+..-| -.++. .|.+.=.+|...+..++..+.+.|.+|++.+..++
T Consensus 61 v~~~e~ei~~~r~r~~~~e~kl---~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 61 VSQLESEIQEIRERIKRAEEKL---SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444333 11221 22233334444454555555555555554444443
No 118
>PRK02224 chromosome segregation protein; Provisional
Probab=78.33 E-value=13 Score=44.74 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 005993 569 ENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL 608 (666)
Q Consensus 569 e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~ 608 (666)
+...+.+++...+..+..-.+++..++.++..++.+++.+
T Consensus 259 ~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l 298 (880)
T PRK02224 259 EIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDL 298 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444433333322334444444444444333333
No 119
>PRK00106 hypothetical protein; Provisional
Probab=78.16 E-value=33 Score=40.08 Aligned_cols=16 Identities=0% Similarity=0.092 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 005993 632 NLRKKIKDASDTIQDL 647 (666)
Q Consensus 632 ~lr~kl~~~~~~i~~~ 647 (666)
.|.++.+++...+++.
T Consensus 140 eLee~~~~~~~~~~~~ 155 (535)
T PRK00106 140 HIDEREEQVEKLEEQK 155 (535)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333334333
No 120
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=77.67 E-value=25 Score=42.75 Aligned_cols=92 Identities=23% Similarity=0.370 Sum_probs=67.5
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhhHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCR-SLEAQLKVMQQTIEELNKEQESLID----------IFAEERDRREREEE 631 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~-~l~~~~~~~~~~~~~~~keq~~li~----------~f~eer~~~~~e~~ 631 (666)
+.||+.=-.|--.||...--...+|.+|.| .||.+|.++.++|.++.-|..+|.. -+.|++.+-+.|-+
T Consensus 58 ~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~ 137 (769)
T PF05911_consen 58 MRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIE 137 (769)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 666665555544555544444578888888 9999999999999999888876655 55678888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 005993 632 NLRKKIKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 632 ~lr~kl~~~~~~i~~~~~~~~~~ 654 (666)
.|..+|+-+-..+-.|.=.|..+
T Consensus 138 ~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 138 DLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777666555544443
No 121
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=77.64 E-value=27 Score=42.38 Aligned_cols=8 Identities=13% Similarity=0.210 Sum_probs=4.6
Q ss_pred ccCCcccc
Q 005993 64 QYGNGFKT 71 (666)
Q Consensus 64 rYGnGfKT 71 (666)
.|++|.++
T Consensus 44 ~~~lg~~~ 51 (1179)
T TIGR02168 44 RWVLGEQS 51 (1179)
T ss_pred HHHHcCCc
Confidence 55666654
No 122
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=77.55 E-value=41 Score=34.63 Aligned_cols=42 Identities=21% Similarity=0.463 Sum_probs=18.0
Q ss_pred hhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHH
Q 005993 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIE 606 (666)
Q Consensus 565 ~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~ 606 (666)
+++..+..|++++.++.+.+..++++...+.+.++..++.|.
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444433
No 123
>PRK10364 sensor protein ZraS; Provisional
Probab=77.32 E-value=2.1 Score=46.65 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=44.1
Q ss_pred hcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccc---cccccCCeEEEEeee
Q 005993 16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT---STMRLGADVIVFSCC 86 (666)
Q Consensus 16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKT---gSMRLGkdviVfSK~ 86 (666)
.++|....-.+.-.|.|.|||.||+++.+.++..-|++.+. +..|.||.. -.-++|-.+.|-+..
T Consensus 369 ~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~------~g~GlGL~iv~~~v~~~gG~i~i~s~~ 436 (457)
T PRK10364 369 VISVTASESGAGVKISVTDSGKGIAADQLEAIFTPYFTTKA------EGTGLGLAVVHNIVEQHGGTIQVASQE 436 (457)
T ss_pred eEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCccccCCC------CCCcccHHHHHHHHHHCCCEEEEEeCC
Confidence 34444433344568999999999999999999877776552 235788763 333567777776653
No 124
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=77.25 E-value=32 Score=41.30 Aligned_cols=85 Identities=31% Similarity=0.402 Sum_probs=56.6
Q ss_pred cCcccc-chhhhhhhhhhhHHHHHHHHhHHhH-HHHHHhhhcHHHHH--------------------HHHHHHHHHHHHH
Q 005993 554 LSDCSL-GANLGQLKQENHELKKRLEKKEGEL-QEERERCRSLEAQL--------------------KVMQQTIEELNKE 611 (666)
Q Consensus 554 ~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~-~~e~~~~~~l~~~~--------------------~~~~~~~~~~~ke 611 (666)
+.++++ -+.|..++++...|-+-|.++|..| +-|+.|.-.+++++ +++-|.+-++.|.
T Consensus 338 ~~~~d~~q~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkK 417 (961)
T KOG4673|consen 338 VSDSDDVQLELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKK 417 (961)
T ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHH
Confidence 444444 6778999999999999999999885 55555554444433 4455555555555
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993 612 QESLIDIFAEERDRREREEENLRKKIKDASD 642 (666)
Q Consensus 612 q~~li~~f~eer~~~~~e~~~lr~kl~~~~~ 642 (666)
=.++ .-|||.-.+|-.+||+-|.-+..
T Consensus 418 vqa~----~kERDalr~e~kslk~ela~~l~ 444 (961)
T KOG4673|consen 418 VQAL----TKERDALRREQKSLKKELAAALL 444 (961)
T ss_pred HHHH----HHhHHHHHHHHHHHHHHHHHhhh
Confidence 4444 35888888888888776655443
No 125
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.14 E-value=14 Score=44.63 Aligned_cols=40 Identities=28% Similarity=0.434 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005993 607 ELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDL 647 (666)
Q Consensus 607 ~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~ 647 (666)
.+|+|||-++- .-+--..+.+|++.|..|++.-|--|||+
T Consensus 424 Qk~reqe~iv~-~nak~~ql~~eletLn~k~qqls~kl~Dv 463 (1118)
T KOG1029|consen 424 QKNREQEWIVY-LNAKKKQLQQELETLNFKLQQLSGKLQDV 463 (1118)
T ss_pred hhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34566665544 33444556778888888888877777664
No 126
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=77.12 E-value=53 Score=31.83 Aligned_cols=15 Identities=47% Similarity=0.581 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 005993 594 LEAQLKVMQQTIEEL 608 (666)
Q Consensus 594 l~~~~~~~~~~~~~~ 608 (666)
++++|.+++.++++.
T Consensus 54 ~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 54 LEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHhH
Confidence 333444444443333
No 127
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.70 E-value=11 Score=38.02 Aligned_cols=51 Identities=33% Similarity=0.522 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005993 594 LEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 594 l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~ 655 (666)
|++.+.+++..-+++.+.-+.|+ +|-++|.+|||+|...|-.|++.+++.+
T Consensus 123 l~eK~~~~~~Everi~~~ieE~v-----------~eLe~~a~~lke~~~~i~~l~~~ik~~~ 173 (181)
T COG4345 123 LEEKLADAMEEVERIEKTIEELV-----------SELESLANKLKEVTDVINSLVERIKQEH 173 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 44444555555555555444443 3455677799999999999999999754
No 128
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=76.03 E-value=65 Score=35.40 Aligned_cols=52 Identities=33% Similarity=0.602 Sum_probs=29.5
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHH----------------------HHHHHHHHHHHHHHHHH
Q 005993 559 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLK----------------------VMQQTIEELNKEQESLI 616 (666)
Q Consensus 559 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~----------------------~~~~~~~~~~keq~~li 616 (666)
|..-+..|++||..||.- +..++.+|+.|.+.+. .+-++|..++||.+.|+
T Consensus 25 l~~~~~sL~qen~~Lk~E-------l~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~ 97 (310)
T PF09755_consen 25 LRKRIESLQQENRVLKRE-------LETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLA 97 (310)
T ss_pred HHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334477777777776653 3334444444444331 23356777788877776
Q ss_pred H
Q 005993 617 D 617 (666)
Q Consensus 617 ~ 617 (666)
-
T Consensus 98 ~ 98 (310)
T PF09755_consen 98 L 98 (310)
T ss_pred H
Confidence 3
No 129
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=75.95 E-value=2.3 Score=50.08 Aligned_cols=71 Identities=18% Similarity=0.150 Sum_probs=46.0
Q ss_pred ccchhcccCCCCCCCcceEEEEECCCCCCHHHHHH--------HHh-cCCCCCCCc---cccccccCCcccccccccCCe
Q 005993 12 SKMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRH--------CMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGAD 79 (666)
Q Consensus 12 a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~--------~ms-fG~s~k~~~---~~~IGrYGnGfKTgSMRLGkd 79 (666)
|+-+.+.|+- ...+.|.|||.||+.+.... +|. +-.+.|... ....|..|.|++... .+...
T Consensus 58 a~~I~V~i~~-----dg~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vN-alS~~ 131 (631)
T PRK05559 58 GKRIEVTLHA-----DGSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVN-ALSSR 131 (631)
T ss_pred CCEEEEEEeC-----CCcEEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhh-hheee
Confidence 4445555542 12799999999999887776 552 122222211 246899999998543 45567
Q ss_pred EEEEeeecC
Q 005993 80 VIVFSCCCG 88 (666)
Q Consensus 80 viVfSK~~g 88 (666)
+.|-|+.+|
T Consensus 132 l~V~s~r~g 140 (631)
T PRK05559 132 LEVEVKRDG 140 (631)
T ss_pred EEEEEEeCC
Confidence 888888765
No 130
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=75.80 E-value=2.3 Score=45.57 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=39.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccc---cccccCCeEEEEeee
Q 005993 25 WSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT---STMRLGADVIVFSCC 86 (666)
Q Consensus 25 ~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKT---gSMRLGkdviVfSK~ 86 (666)
.+.-.|.|.|||.||+++++.+++.-++.... ...-+.+|.||-- -.-..|-++.|-+..
T Consensus 359 ~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~--~~~~~g~GlGL~iv~~i~~~~~g~l~i~~~~ 421 (435)
T PRK09467 359 GKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDS--ARGSSGTGLGLAIVKRIVDQHNGKVELGNSE 421 (435)
T ss_pred CCEEEEEEEecCCCcCHHHHHHhcCCcccCCC--CCCCCCeehhHHHHHHHHHHCCCEEEEEECC
Confidence 44557999999999999999998866554321 1123557888752 222356677666554
No 131
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=75.59 E-value=1.8 Score=46.99 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=41.7
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccc---ccccccCCeEEEEeee
Q 005993 25 WSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCC 86 (666)
Q Consensus 25 ~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfK---TgSMRLGkdviVfSK~ 86 (666)
.+.-.|.|.|||.||+++.+.++..-.+..+.......|..|.||- ...-+.|..+.|-|..
T Consensus 347 ~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~~ 411 (430)
T PRK11006 347 PQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIESEV 411 (430)
T ss_pred CCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 3456799999999999999999886444433211223456688885 3334567777777664
No 132
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=75.57 E-value=19 Score=34.30 Aligned_cols=93 Identities=25% Similarity=0.349 Sum_probs=66.3
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN--KEQESLIDIFAEERDRREREEENLRKKIKDA 640 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~--keq~~li~~f~eer~~~~~e~~~lr~kl~~~ 640 (666)
..+|-+.|-++..+|......+..-++.++.|..+.++.++++.++. --..+|...|...=..-|.|-+.|..+.-+.
T Consensus 43 n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g 122 (150)
T PF07200_consen 43 NEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASEAEEESEELAEEFLDG 122 (150)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SSS
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56677788888888888888888777888888888888888777763 2466778888888778888888887777666
Q ss_pred HHHHHHHHHHHhhhh
Q 005993 641 SDTIQDLLDKIKLLE 655 (666)
Q Consensus 641 ~~~i~~~~~~~~~~~ 655 (666)
...+++.+.+-...+
T Consensus 123 ~~d~~~Fl~~f~~~R 137 (150)
T PF07200_consen 123 EIDVDDFLKQFKEKR 137 (150)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 667777777766443
No 133
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=75.17 E-value=0.93 Score=53.62 Aligned_cols=78 Identities=29% Similarity=0.451 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhh---HHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL------IDIFAEERDRR---EREEENL 633 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l------i~~f~eer~~~---~~e~~~l 633 (666)
+..|+.+...|++.+.++|+.+..-..+|..|+.++.+++++.+++..+-+.. +|++-++.+|- +.+.++.
T Consensus 241 ~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~Y 320 (713)
T PF05622_consen 241 LADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKY 320 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777666666788888888888888888777554432 57777766663 4567899
Q ss_pred HHHHHHH
Q 005993 634 RKKIKDA 640 (666)
Q Consensus 634 r~kl~~~ 640 (666)
|+||+|.
T Consensus 321 KkKLed~ 327 (713)
T PF05622_consen 321 KKKLEDL 327 (713)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 9999874
No 134
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=75.11 E-value=17 Score=43.43 Aligned_cols=89 Identities=21% Similarity=0.402 Sum_probs=52.5
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER----DRREREEENLRK 635 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer----~~~~~e~~~lr~ 635 (666)
...++.|.......++++..+...++....+++.|..++...++.+++.-++-..++.-+++++ ++. +|+.+|+
T Consensus 226 ~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~--~e~~~r~ 303 (670)
T KOG0239|consen 226 RRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK--KEKEERR 303 (670)
T ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 3445566566666666666666666655555556666655555555554444444444443333 222 5667888
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 005993 636 KIKDASDTIQDLLDKIKL 653 (666)
Q Consensus 636 kl~~~~~~i~~~~~~~~~ 653 (666)
||. |+||||.-.|+.
T Consensus 304 kL~---N~i~eLkGnIRV 318 (670)
T KOG0239|consen 304 KLH---NEILELKGNIRV 318 (670)
T ss_pred HHH---HHHHHhhcCceE
Confidence 886 789999877653
No 135
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=74.93 E-value=44 Score=32.66 Aligned_cols=84 Identities=27% Similarity=0.431 Sum_probs=53.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK-DAS 641 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~-~~~ 641 (666)
|.-|+.+.+.+-..|...+.+|.-=+.....|+..++..|.++.++..-+.++.....+ .|.+ +.+++ +++
T Consensus 54 ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~------~E~e--k~q~~e~~~ 125 (140)
T PF10473_consen 54 IETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQE------KEQE--KVQLKEESK 125 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------HHHH--HHHHHHHHH
Confidence 33455555555555555555544434556778999999999999998888777666653 2222 44444 566
Q ss_pred HHHHHHHHHHhhh
Q 005993 642 DTIQDLLDKIKLL 654 (666)
Q Consensus 642 ~~i~~~~~~~~~~ 654 (666)
..+..|..+++.+
T Consensus 126 ~~ve~L~~ql~~L 138 (140)
T PF10473_consen 126 SAVEMLQKQLKEL 138 (140)
T ss_pred HHHHHHHHHHhhh
Confidence 6677777776644
No 136
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=74.72 E-value=13 Score=39.12 Aligned_cols=84 Identities=26% Similarity=0.416 Sum_probs=57.2
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHH----------------------------------HHHHHHH
Q 005993 571 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN----------------------------------KEQESLI 616 (666)
Q Consensus 571 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~----------------------------------keq~~li 616 (666)
.+|++.|...+.++++-.+-+..||.-|..+++...... -...+|+
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 356666666677776666777777777777775422211 1456899
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993 617 DIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 617 ~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~ 654 (666)
.|..--|||..+--..|..-|...-.+|+.|-..|..+
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L 119 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESL 119 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877777777777777776655544433
No 137
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=74.67 E-value=30 Score=38.04 Aligned_cols=88 Identities=27% Similarity=0.408 Sum_probs=57.3
Q ss_pred hhhhhhhhhhHHHHHHHHhH-----------------HhH----HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKE-----------------GEL----QEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 620 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~-----------------~~~----~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ 620 (666)
...||+++.+.||....... .+| ..=++.++.|.+++++++|+|.|+..+-..|-..++
T Consensus 31 MAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la 110 (319)
T PF09789_consen 31 MAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLA 110 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 35677777777777665444 112 333388999999999999999998888766665444
Q ss_pred ---------------HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 621 ---------------EERDRREREEENLRKKIKDASDTIQDLLD 649 (666)
Q Consensus 621 ---------------eer~~~~~e~~~lr~kl~~~~~~i~~~~~ 649 (666)
+||...=.+-|.++.|.+.--..+|.+++
T Consensus 111 ~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lD 154 (319)
T PF09789_consen 111 RQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLD 154 (319)
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666555555555444
No 138
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=74.46 E-value=2.5 Score=46.92 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=42.5
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccccc---ccccCCeEEEEeee
Q 005993 24 LWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS---TMRLGADVIVFSCC 86 (666)
Q Consensus 24 ~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTg---SMRLGkdviVfSK~ 86 (666)
-.+.-.+.|.|||.||+++.+.++..-|++.+.. .-|.-|.||... .-..|..+.|-|..
T Consensus 465 ~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~---~~~g~GlGL~ivk~iv~~~~G~i~v~s~~ 527 (545)
T PRK15053 465 EGDDVVIEVADQGCGVPESLRDKIFEQGVSTRAD---EPGEHGIGLYLIASYVTRCGGVITLEDND 527 (545)
T ss_pred CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCC---CCCCceeCHHHHHHHHHHcCCEEEEEECC
Confidence 3455679999999999999999999888876532 234458888532 23466667776653
No 139
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=74.45 E-value=32 Score=34.51 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=12.4
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESL 615 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~l 615 (666)
.+|+.|++++++.++.++.++-|-.+|
T Consensus 130 ~~~~~l~~~l~ek~k~~e~l~DE~~~L 156 (194)
T PF08614_consen 130 EKIKDLEEELKEKNKANEILQDELQAL 156 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 140
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=74.37 E-value=53 Score=34.04 Aligned_cols=81 Identities=22% Similarity=0.407 Sum_probs=55.2
Q ss_pred hhHHHHHHHHhHHhHHHHHH----hh----hcHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993 570 NHELKKRLEKKEGELQEERE----RC----RSLEAQ---------------LKVMQQTIEELNKEQESLIDIFAEERDRR 626 (666)
Q Consensus 570 ~~~~~~~~~~~~~~~~~e~~----~~----~~l~~~---------------~~~~~~~~~~~~keq~~li~~f~eer~~~ 626 (666)
...+++.+.+++..|+.|.. -. +.++.+ +...+..+..++..=.+|=+.+.+||..|
T Consensus 36 ~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r 115 (247)
T PF06705_consen 36 FQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEER 115 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777777765551 11 122222 23444556667777778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 627 EREEENLRKKIKDASDTIQDLLDK 650 (666)
Q Consensus 627 ~~e~~~lr~kl~~~~~~i~~~~~~ 650 (666)
....+.+...|..-..++++.++.
T Consensus 116 ~~~ie~~~~~l~~~l~~l~~~~~~ 139 (247)
T PF06705_consen 116 PQDIEELNQELVRELNELQEAFEN 139 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888777777666553
No 141
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=74.22 E-value=36 Score=37.80 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=51.1
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKI 651 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~ 651 (666)
-|-|.=..+||.+-.+++|-|.-++.=.|....|+...+.|-..|-.-|.||..-+|+|.+.-
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~ey 185 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEY 185 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555667788889999999999999999988877777777778889999999999888754
No 142
>PRK03918 chromosome segregation protein; Provisional
Probab=74.19 E-value=40 Score=40.51 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=18.0
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHhc
Q 005993 25 WSFHCICFADNGGGMNPDKMRHCMSL 50 (666)
Q Consensus 25 ~G~~~L~I~DDG~GMd~~el~~~msf 50 (666)
.....+.+-+||.|= ..+..||.|
T Consensus 22 ~~g~~~i~G~nG~GK--Stil~ai~~ 45 (880)
T PRK03918 22 DDGINLIIGQNGSGK--SSILEAILV 45 (880)
T ss_pred CCCcEEEEcCCCCCH--HHHHHHHHH
Confidence 345578899999996 567788765
No 143
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=74.10 E-value=34 Score=41.79 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=53.6
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR 625 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~ 625 (666)
+..+++++-...+|.-+++++|-+++.=-+-..-++.++.+++-.||+++-+-+-|++.++--|+.
T Consensus 98 Eddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~e 163 (1265)
T KOG0976|consen 98 EDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHD 163 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHH
Confidence 445788888888888888888888777667778888888888889999999999998877766653
No 144
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=73.98 E-value=52 Score=28.68 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=23.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 621 EERDRREREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 621 eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
+|+..=.+|-+.|+.--......|.-||.+|+
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55555566777777777777888888888886
No 145
>PLN02678 seryl-tRNA synthetase
Probab=73.88 E-value=33 Score=39.19 Aligned_cols=98 Identities=12% Similarity=0.211 Sum_probs=47.7
Q ss_pred hhhhhh---hh-hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhHHHHHH
Q 005993 563 LGQLKQ---EN-HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE------ERDRREREEEN 632 (666)
Q Consensus 563 ~~~~~~---e~-~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e------er~~~~~e~~~ 632 (666)
|+-+++ +| ..+++.|.++--++. .+|..-.|..+...+++++++++.|+-.+-..+.. ++..--+|...
T Consensus 4 ~k~ir~~~~~~~~~v~~~l~~R~~~~~-~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~ 82 (448)
T PLN02678 4 INLFREEKGGDPELIRESQRRRFASVE-LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKE 82 (448)
T ss_pred HHHHhcccccCHHHHHHHHHhhCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 455554 44 445666666632221 13444444555555555555555555444444432 22222223445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCc
Q 005993 633 LRKKIKDASDTIQDLLDKIKLLEKMKTPSI 662 (666)
Q Consensus 633 lr~kl~~~~~~i~~~~~~~~~~~~~~~~~~ 662 (666)
|+++++.....++++-+++..+- +..||+
T Consensus 83 Lk~ei~~le~~~~~~~~~l~~~~-~~iPNi 111 (448)
T PLN02678 83 LKKEITEKEAEVQEAKAALDAKL-KTIGNL 111 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 55566655555555556555433 455554
No 146
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=73.66 E-value=67 Score=32.79 Aligned_cols=67 Identities=25% Similarity=0.387 Sum_probs=35.4
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFA----EERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~----eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~ 655 (666)
++++.++..+.+...+|..++.+-..|-..-. .||+.-..+-+.+..+|.++-..|++|--++....
T Consensus 82 ~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~ 152 (194)
T PF15619_consen 82 EQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELEN 152 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444443333333333311 24666666666667777777777777666665544
No 147
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=73.59 E-value=16 Score=45.04 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=32.5
Q ss_pred CccCccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHH
Q 005993 552 HFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQL 598 (666)
Q Consensus 552 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~ 598 (666)
..-+++ +.||.-|.=||..|||+|++.+..=-..|+|-|..|.++
T Consensus 128 Ss~ddy--RSVIDDLTve~kkLK~eLkrykq~g~~~L~~dKLFEik~ 172 (989)
T PF09421_consen 128 SSADDY--RSVIDDLTVENKKLKEELKRYKQRGPAMLRKDKLFEIKI 172 (989)
T ss_pred ccchhh--hhhhhhHHHHHHHHHHHHHHhccCCchhccccceeEEEe
Confidence 445555 899999999999999999999876333344444444444
No 148
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=73.33 E-value=63 Score=30.63 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=16.8
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEER 588 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~ 588 (666)
+.++|+++...+...|..++.+++.+.
T Consensus 37 ~~~~l~~~~~~~~~~l~~~~~el~~~~ 63 (158)
T PF03938_consen 37 AQAKLQEKFKALQKELQAKQKELQKLQ 63 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666665555
No 149
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=72.65 E-value=2.7 Score=45.84 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=41.2
Q ss_pred cccCCCCCCCc-ceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccc---cccccCCeEEEEeee
Q 005993 17 LCSNLPSLWSF-HCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT---STMRLGADVIVFSCC 86 (666)
Q Consensus 17 ~~i~~~~~~G~-~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKT---gSMRLGkdviVfSK~ 86 (666)
++|......+. ..|.|.|||.||+++.+.+....+++.+. +..|.||.. -.-++|.++.|-+..
T Consensus 522 i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~------~g~glGL~~~~~~~~~~~G~i~~~s~~ 589 (607)
T PRK11360 522 IRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKA------KGTGLGLALSQRIINAHGGDIEVESEP 589 (607)
T ss_pred EEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCC------CCCchhHHHHHHHHHHcCCEEEEEEcC
Confidence 34443223344 78999999999999999887766654432 234666653 233567777776664
No 150
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=72.59 E-value=2.5 Score=42.42 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=41.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccc---cccccCCeEEEEeee
Q 005993 26 SFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT---STMRLGADVIVFSCC 86 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKT---gSMRLGkdviVfSK~ 86 (666)
+...|.|.|||.||+++.+.++....+..........+..|.||.. ..-.+|..+.+-+..
T Consensus 260 ~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~~~~~~~~~~gG~i~~~s~~ 323 (333)
T TIGR02966 260 GGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVLSRHHARLEIESEL 323 (333)
T ss_pred CEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHHHHHHHHHHCCCEEEEEecC
Confidence 4467999999999999999999876554332112233445888863 233467787777764
No 151
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=72.36 E-value=4.6 Score=38.75 Aligned_cols=39 Identities=36% Similarity=0.448 Sum_probs=29.2
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVM 601 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~ 601 (666)
|..||.||.=|||.|-.++|.....+.-...|.+||+.+
T Consensus 87 I~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 87 IEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 778999999999999998888766655555555555544
No 152
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=72.35 E-value=37 Score=38.91 Aligned_cols=37 Identities=35% Similarity=0.510 Sum_probs=18.3
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 005993 573 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN 609 (666)
Q Consensus 573 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ 609 (666)
|..++++.+.++..|+|-++.|.+-++.-+.||++++
T Consensus 387 ~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~ 423 (493)
T KOG0804|consen 387 LQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELE 423 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444455555555555555555555554443
No 153
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=72.31 E-value=30 Score=40.88 Aligned_cols=93 Identities=20% Similarity=0.289 Sum_probs=73.0
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHH----HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEE----RERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK 635 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e----~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~ 635 (666)
.++|-.|..|+..|++-+.+.-.+.+.. .+...+...+.+. -|-.|.++-+.+-...++||.....+-..|-+
T Consensus 248 q~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~---~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~ 324 (629)
T KOG0963|consen 248 QQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDS---EIAQLSNDIERLEASLVEEREKHKAQISALEK 324 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578889999999999999988887665 3555555555443 44455666666677778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 005993 636 KIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 636 kl~~~~~~i~~~~~~~~~~~ 655 (666)
+|+.+..+|.+|.++|+.-.
T Consensus 325 ~l~~~~~~leel~~kL~~~s 344 (629)
T KOG0963|consen 325 ELKAKISELEELKEKLNSRS 344 (629)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999987543
No 154
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=72.12 E-value=24 Score=38.54 Aligned_cols=31 Identities=32% Similarity=0.554 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005993 608 LNKEQESLIDIFAEERDRREREEENLRKKIK 638 (666)
Q Consensus 608 ~~keq~~li~~f~eer~~~~~e~~~lr~kl~ 638 (666)
+..|||+||+-+.--=+.=..|...|+.||.
T Consensus 172 LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 172 LEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456666666666555555555556666655
No 155
>PRK09835 sensor kinase CusS; Provisional
Probab=71.82 E-value=4.9 Score=43.48 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=42.9
Q ss_pred cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcc---cccccccCCeEEEEee
Q 005993 17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF---KTSTMRLGADVIVFSC 85 (666)
Q Consensus 17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGf---KTgSMRLGkdviVfSK 85 (666)
++|....-.+.-.|.|.|||.||+++++.....-.++........-+.+|.|| |.---.+|..+.|-+.
T Consensus 397 I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~i~~~~~g~i~~~s~ 468 (482)
T PRK09835 397 ITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSD 468 (482)
T ss_pred EEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHHHHHHHHHCCCEEEEEEC
Confidence 44443222344689999999999999998887533332211112335578888 4445557777777665
No 156
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=71.71 E-value=2.7 Score=43.96 Aligned_cols=67 Identities=15% Similarity=0.080 Sum_probs=43.9
Q ss_pred cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccc---cccccCCeEEEEeeec
Q 005993 17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT---STMRLGADVIVFSCCC 87 (666)
Q Consensus 17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKT---gSMRLGkdviVfSK~~ 87 (666)
+.|....-.+.-.|.|.|||.||+++++.++..-++.... .-+..|.||.. ..-.+|..+.|-|...
T Consensus 269 I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~ 338 (356)
T PRK10755 269 ITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQE 338 (356)
T ss_pred EEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC----CCCCcCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4444323334568999999999999999988765543221 23457888753 3345777888877653
No 157
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=71.36 E-value=5.2 Score=46.81 Aligned_cols=65 Identities=20% Similarity=0.278 Sum_probs=46.9
Q ss_pred CCCcceEEEEECCCCCCHHHHHH-HHhcCCCCCCCc--cccccccC-CcccccccccCCeEEEEeeecC
Q 005993 24 LWSFHCICFADNGGGMNPDKMRH-CMSLGYSAKSKA--ANTIGQYG-NGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 24 ~~G~~~L~I~DDG~GMd~~el~~-~msfG~s~k~~~--~~~IGrYG-nGfKTgSMRLGkdviVfSK~~g 88 (666)
-+|-..|.|.|||.|+-.+++-- |=+|-.|.-.+- -..|--|| .|=--||++-.+.|+|-||..+
T Consensus 53 ~GGLKLlQisDnG~GI~reDl~ilCeRftTSKL~kFEDL~~lsTyGFRGEALASiShVA~VtV~TK~~~ 121 (694)
T KOG1979|consen 53 DGGLKLLQISDNGSGIRREDLPILCERFTTSKLTKFEDLFSLSTYGFRGEALASISHVAHVTVTTKTAE 121 (694)
T ss_pred cCCeEEEEEecCCCccchhhhHHHHHHhhhhhcchhHHHHhhhhcCccHHHHhhhhheeEEEEEEeecC
Confidence 46777899999999999999843 447877654321 12455554 2333689999999999999875
No 158
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=71.05 E-value=50 Score=39.91 Aligned_cols=66 Identities=23% Similarity=0.383 Sum_probs=43.0
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDI--------------FAEERDRREREEENLRKKIKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~--------------f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~ 654 (666)
++.+.|.+..+.+..++|++...|+.|..= .|+.=.+..+|-+.++.+|+.-...|+++..+++..
T Consensus 586 e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q 665 (717)
T PF10168_consen 586 EERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQ 665 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555566777888778777652 222123445677888888888888888888877653
No 159
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=70.60 E-value=19 Score=35.70 Aligned_cols=60 Identities=27% Similarity=0.427 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 594 LEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 594 l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
++++++.+++|.++..+..+.+ -.++-+.-..|.++|+++|+.+-..+..|.+|...+.+
T Consensus 130 ~~~~~~~~~kq~~~~~~~~~~~---~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 130 LEEKLEALKKQAESASEAAEKL---LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHhhhhhhhhh---hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444443333333 44566677889999999999999999999999887753
No 160
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=70.59 E-value=4.3 Score=47.79 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=46.3
Q ss_pred ccchhcccCCCCCCCcceEEEEECCCCCCHHH--------HHHHH-hcCCCCCCCc---cccccccCCcccccccccCCe
Q 005993 12 SKMLQLCSNLPSLWSFHCICFADNGGGMNPDK--------MRHCM-SLGYSAKSKA---ANTIGQYGNGFKTSTMRLGAD 79 (666)
Q Consensus 12 a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~e--------l~~~m-sfG~s~k~~~---~~~IGrYGnGfKTgSMRLGkd 79 (666)
|+.+.+.|+. + ..+.|.|||.||+.+. +.-+| ..-.+.|... ....|.-|.|+++.. .+...
T Consensus 51 a~~I~V~i~~----d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vn-alS~~ 124 (625)
T TIGR01055 51 ASIIMVILHQ----D-QSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVN-ALSKR 124 (625)
T ss_pred CCEEEEEEeC----C-CeEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHH-HhcCe
Confidence 4445555542 2 5799999999999877 55555 2222222211 246899999998553 46677
Q ss_pred EEEEeeecC
Q 005993 80 VIVFSCCCG 88 (666)
Q Consensus 80 viVfSK~~g 88 (666)
+.|-|+.+|
T Consensus 125 l~v~~~r~g 133 (625)
T TIGR01055 125 VKIKVYRQG 133 (625)
T ss_pred EEEEEEECC
Confidence 888888765
No 161
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=70.54 E-value=83 Score=33.15 Aligned_cols=66 Identities=21% Similarity=0.333 Sum_probs=32.3
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005993 590 RCRSLEAQLKVMQQTIEELNKEQESLIDIFA-------EERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 590 ~~~~l~~~~~~~~~~~~~~~keq~~li~~f~-------eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~ 655 (666)
-++.+..+++.++.+|+.+.....+|-+... .++.........|...|.++-..|+..+.....|-
T Consensus 217 E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll 289 (312)
T PF00038_consen 217 ELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELL 289 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555444 44444444444555555555555555444444443
No 162
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=70.40 E-value=45 Score=40.86 Aligned_cols=42 Identities=33% Similarity=0.417 Sum_probs=28.7
Q ss_pred hHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 580 KEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 621 (666)
Q Consensus 580 ~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e 621 (666)
..++++..+++.++++++++.++.+++.+..+++.|.+..-+
T Consensus 313 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 354 (908)
T COG0419 313 LLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNE 354 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666788888888888888777777777766544433
No 163
>PRK03918 chromosome segregation protein; Provisional
Probab=70.32 E-value=63 Score=38.84 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=20.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 622 ERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 622 er~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
+++.-..+.+.|+.++.+....|.+|-+.++.++.
T Consensus 399 ~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~ 433 (880)
T PRK03918 399 AKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555666666666666677666666664
No 164
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=70.05 E-value=25 Score=30.57 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005993 599 KVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 638 (666)
Q Consensus 599 ~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~ 638 (666)
.+..++|..-+++.+.-|+-+....+.-+.+-++|+.+|+
T Consensus 32 ~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 32 NNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444444444444443333344444444444443
No 165
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=69.80 E-value=4.7 Score=39.47 Aligned_cols=40 Identities=15% Similarity=0.281 Sum_probs=29.1
Q ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccc
Q 005993 27 FHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 70 (666)
Q Consensus 27 ~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfK 70 (666)
.-.|.|.|||.||+++.+..+...+++.+.... -.|.||.
T Consensus 259 ~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~----g~GlGL~ 298 (336)
T COG0642 259 QVTISVEDTGPGIPEEELERIFEPFFRTDKSRS----GTGLGLA 298 (336)
T ss_pred eEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC----CCCccHH
Confidence 468999999999999998888776666553211 3456664
No 166
>PRK10547 chemotaxis protein CheA; Provisional
Probab=69.54 E-value=7 Score=46.52 Aligned_cols=61 Identities=23% Similarity=0.415 Sum_probs=42.2
Q ss_pred CCcceEEEEECCCCCCHHHHHH---------------------HHhcCCCCCCCccccccccCCcc---cccccccCCeE
Q 005993 25 WSFHCICFADNGGGMNPDKMRH---------------------CMSLGYSAKSKAANTIGQYGNGF---KTSTMRLGADV 80 (666)
Q Consensus 25 ~G~~~L~I~DDG~GMd~~el~~---------------------~msfG~s~k~~~~~~IGrYGnGf---KTgSMRLGkdv 80 (666)
.+.-.|.|.|||.||+++.+.+ ...-|++.+.. ...+.--|.|| |+.--++|-.+
T Consensus 427 ~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~~-~~~~sGrGvGL~iVk~~ve~lgG~I 505 (670)
T PRK10547 427 GGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTAEQ-VTDVSGRGVGMDVVKRNIQEMGGHV 505 (670)
T ss_pred CCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCcccccc-cccCCCCchhHHHHHHHHHHcCCEE
Confidence 3456789999999999988753 22336766532 23344558888 45556789999
Q ss_pred EEEeee
Q 005993 81 IVFSCC 86 (666)
Q Consensus 81 iVfSK~ 86 (666)
.|-|..
T Consensus 506 ~v~S~~ 511 (670)
T PRK10547 506 EIQSKQ 511 (670)
T ss_pred EEEecC
Confidence 998875
No 167
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=69.40 E-value=44 Score=36.28 Aligned_cols=21 Identities=48% Similarity=0.599 Sum_probs=10.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHh
Q 005993 563 LGQLKQENHELKKRLEKKEGE 583 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~ 583 (666)
+++|++|..+|.+.|..+|.+
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e 72 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKE 72 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544443
No 168
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=69.30 E-value=70 Score=34.49 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHhhh
Q 005993 638 KDASDTIQDLLDKIKLL 654 (666)
Q Consensus 638 ~~~~~~i~~~~~~~~~~ 654 (666)
.++...|.++-.++..+
T Consensus 249 ~~~~~~l~~~~~~l~~~ 265 (423)
T TIGR01843 249 TEAQARLAELRERLNKA 265 (423)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 169
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.05 E-value=65 Score=36.88 Aligned_cols=75 Identities=40% Similarity=0.405 Sum_probs=50.9
Q ss_pred hhhhhhhhHHHHHHHHhHHhH-----------------HHHH----HhhhcHHHHHHHHH-HHHHHHHHHHH-------H
Q 005993 564 GQLKQENHELKKRLEKKEGEL-----------------QEER----ERCRSLEAQLKVMQ-QTIEELNKEQE-------S 614 (666)
Q Consensus 564 ~~~~~e~~~~~~~~~~~~~~~-----------------~~e~----~~~~~l~~~~~~~~-~~~~~~~keq~-------~ 614 (666)
..||+||--|--|...+||-. .+|+ ++-++|+.+..++. |+|++-|-|-. +
T Consensus 246 SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlks 325 (502)
T KOG0982|consen 246 SRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKS 325 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888777776652 2232 77778877765554 57888777765 5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Q 005993 615 LIDIFAEERDRREREEENLRKKIK 638 (666)
Q Consensus 615 li~~f~eer~~~~~e~~~lr~kl~ 638 (666)
|+|-++||+-|-.++-|.||..|.
T Consensus 326 l~dklaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 326 LADKLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHH
Confidence 678899999776655555554443
No 170
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=69.00 E-value=97 Score=32.04 Aligned_cols=67 Identities=24% Similarity=0.387 Sum_probs=33.3
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLI---DIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li---~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~ 655 (666)
+++..++.++.+++..|..+.....+|= +-.++--+.-...-..|..+|++|.......-.++..|+
T Consensus 134 eR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le 203 (237)
T PF00261_consen 134 ERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLE 203 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433333321 112222244444456677777777776665555555544
No 171
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=68.83 E-value=4.4 Score=47.38 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=42.7
Q ss_pred ccchhcccCCCCCCCcceEEEEECCCCCCHHHH-----------HHHHhcCCCCCCC---ccccccccCCcccccccccC
Q 005993 12 SKMLQLCSNLPSLWSFHCICFADNGGGMNPDKM-----------RHCMSLGYSAKSK---AANTIGQYGNGFKTSTMRLG 77 (666)
Q Consensus 12 a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el-----------~~~msfG~s~k~~---~~~~IGrYGnGfKTgSMRLG 77 (666)
|+.+.+.|+. .| .+.|.|||.||+.+.. ...+--| .+.. .....|.-|.|+++.. .+.
T Consensus 22 at~I~V~i~~---~g--~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag--~kfd~~~~k~s~G~~G~Gls~vn-alS 93 (594)
T smart00433 22 MDTIKVTIDK---DN--SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAG--GKFDDDAYKVSGGLHGVGASVVN-ALS 93 (594)
T ss_pred CCEEEEEEeC---CC--eEEEEEeCCceeCCccCcCCCCcHHHhhhhhccc--CCCCCCCccccCCcccchHHHHH-Hhc
Confidence 4445555543 23 8999999999985332 1222122 1111 1246899999998553 466
Q ss_pred CeEEEEeeecC
Q 005993 78 ADVIVFSCCCG 88 (666)
Q Consensus 78 kdviVfSK~~g 88 (666)
..+.|-|+.+|
T Consensus 94 ~~l~v~~~~~g 104 (594)
T smart00433 94 TEFEVEVARDG 104 (594)
T ss_pred CceEEEEEeCC
Confidence 88899999765
No 172
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=68.55 E-value=33 Score=39.92 Aligned_cols=81 Identities=26% Similarity=0.456 Sum_probs=46.7
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhH---HHHHHhhh----------------------------cHHHHHHHHHHHHHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGEL---QEERERCR----------------------------SLEAQLKVMQQTIEEL 608 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~---~~e~~~~~----------------------------~l~~~~~~~~~~~~~~ 608 (666)
...|.++++.|..|...+.++..+- ..|.+.-+ .+.++++++.++|++.
T Consensus 312 ~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~i 391 (560)
T PF06160_consen 312 YEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEI 391 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHH
Confidence 3447788888888888777776661 12222222 3444556677777777
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005993 609 NKEQESLIDIFAEERDRREREEENLRKKIKDASDTI 644 (666)
Q Consensus 609 ~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i 644 (666)
.++|..+.+.+..=| .+|..-|++|..-...|
T Consensus 392 e~~q~~~~~~l~~L~----~dE~~Ar~~l~~~~~~l 423 (560)
T PF06160_consen 392 EEEQEEINESLQSLR----KDEKEAREKLQKLKQKL 423 (560)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 777777666555443 23444455544444333
No 173
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=68.53 E-value=24 Score=35.31 Aligned_cols=35 Identities=29% Similarity=0.563 Sum_probs=30.2
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER 623 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer 623 (666)
.+++.|+.+++.+++++.....+=++||.|.-.-|
T Consensus 118 ~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 118 KRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999985444
No 174
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=68.49 E-value=7.8 Score=40.18 Aligned_cols=53 Identities=21% Similarity=0.190 Sum_probs=36.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccc---ccccccCCeEEEEeee
Q 005993 28 HCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCC 86 (666)
Q Consensus 28 ~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfK---TgSMRLGkdviVfSK~ 86 (666)
..|.|.|||.||+++.+.+...-+++.+. +--|.||. ...-..|..+.|-+..
T Consensus 281 ~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~------~g~GlGL~i~~~iv~~~gG~i~~~s~~ 336 (348)
T PRK11073 281 ARIDIEDNGPGIPPHLQDTLFYPMVSGRE------GGTGLGLSIARNLIDQHSGKIEFTSWP 336 (348)
T ss_pred EEEEEEeCCCCCCHHHHhhccCCcccCCC------CCccCCHHHHHHHHHHcCCeEEEEecC
Confidence 46899999999999988777644444331 22477763 4445678888887763
No 175
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=68.40 E-value=30 Score=34.92 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=12.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHH
Q 005993 621 EERDRREREEENLRKKIKDASDTIQ 645 (666)
Q Consensus 621 eer~~~~~e~~~lr~kl~~~~~~i~ 645 (666)
+||...-+|-+.|++.++.....++
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444443
No 176
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=68.40 E-value=1.3e+02 Score=30.08 Aligned_cols=49 Identities=29% Similarity=0.314 Sum_probs=30.6
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHH
Q 005993 559 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEE 607 (666)
Q Consensus 559 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~ 607 (666)
|..|..+-++|...|+.-|..+...+..=.+..-.|+.+-.-|.+.|-+
T Consensus 18 If~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~e 66 (159)
T PF05384_consen 18 IFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAE 66 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888777777777655555555555555444444433
No 177
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=68.39 E-value=96 Score=32.07 Aligned_cols=86 Identities=24% Similarity=0.374 Sum_probs=48.5
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHH----HH--H-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQ----EE--R-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK 635 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~----~e--~-~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~ 635 (666)
+..|..+...+...|+.+|..-. +| + ++.+.|+.+|.+|....+.+-.. +..+..+.++-..+-...+.
T Consensus 143 i~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~----v~~Le~~id~le~eL~~~k~ 218 (237)
T PF00261_consen 143 IKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERR----VKKLEKEIDRLEDELEKEKE 218 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444421 11 1 45556666665555555554332 45555666666667777777
Q ss_pred HHHHHHHHHHHHHHHHh
Q 005993 636 KIKDASDTIQDLLDKIK 652 (666)
Q Consensus 636 kl~~~~~~i~~~~~~~~ 652 (666)
|.+.+...+...|.-|+
T Consensus 219 ~~~~~~~eld~~l~el~ 235 (237)
T PF00261_consen 219 KYKKVQEELDQTLNELN 235 (237)
T ss_dssp HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 77777777766665554
No 178
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=68.38 E-value=36 Score=38.32 Aligned_cols=98 Identities=15% Similarity=0.236 Sum_probs=45.6
Q ss_pred hhhhhhhhhHHHHHHHHhHHhH---HHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGEL---QEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE-RDRREREEENLR 634 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~---~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ee-r~~~~~e~~~lr 634 (666)
|+-+++.-...++.|.++--+. ..++ .+.|.|..++++++.+.++..|+=-.+...= ++ ++.--.|-..|+
T Consensus 4 ik~ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~-~~~~~~l~~~~~~l~ 82 (418)
T TIGR00414 4 RKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQK-KDKIEEIKKELKELK 82 (418)
T ss_pred HHHHHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 4555555555666666664221 1111 3445555555555555555444432221110 11 222222344555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCc
Q 005993 635 KKIKDASDTIQDLLDKIKLLEKMKTPSI 662 (666)
Q Consensus 635 ~kl~~~~~~i~~~~~~~~~~~~~~~~~~ 662 (666)
++|++....+.++-++++.+- ++.||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~lPN~ 109 (418)
T TIGR00414 83 EELTELSAALKALEAELQDKL-LSIPNI 109 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 555555555555555555433 555554
No 179
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=67.44 E-value=94 Score=31.83 Aligned_cols=47 Identities=11% Similarity=0.212 Sum_probs=30.0
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 571 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617 (666)
Q Consensus 571 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~ 617 (666)
.-|.+|=.+.+.+|..=-..+...+..+++.+++|.++.+|=..+|+
T Consensus 80 ~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~ 126 (204)
T PRK09174 80 GIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQ 126 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444455566666677777788888777766664
No 180
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=67.44 E-value=88 Score=31.58 Aligned_cols=89 Identities=18% Similarity=0.308 Sum_probs=46.3
Q ss_pred hhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHH
Q 005993 564 GQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEE----------------------LNKEQESLIDIFAE 621 (666)
Q Consensus 564 ~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~----------------------~~keq~~li~~f~e 621 (666)
+.|.+...++.+-|.+.+..+-.-.-..+.|+.++.++++.+++ ..++.+..+..+.+
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~ 105 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQ 105 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777776666533333333333333333333222 23344445555555
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 622 ERDRREREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 622 er~~~~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
..+.-...++.|+..|.++..-|+++-.+..
T Consensus 106 ~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 106 QLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566666666666555555554443
No 181
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=67.29 E-value=54 Score=28.54 Aligned_cols=58 Identities=33% Similarity=0.487 Sum_probs=42.1
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF 619 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f 619 (666)
.|.||..|...|...-.+....+.+=+.+++.++.++.++..+++++.++-++|-+-+
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5888888887777766666666666667777777777777777777777776665443
No 182
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=67.28 E-value=5.6 Score=42.39 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=40.9
Q ss_pred cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccc---ccccccCCeEEEEee
Q 005993 17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSC 85 (666)
Q Consensus 17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfK---TgSMRLGkdviVfSK 85 (666)
+.|....-.+.-.|.|.|||.||+++...+...-.++.+.. ..+.-|.||- .-.-.+|-.+.|=|.
T Consensus 413 i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~---~~~G~GlGL~i~~~iv~~~gG~i~~~s~ 481 (494)
T TIGR02938 413 LSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG---SRKHIGMGLSVAQEIVADHGGIIDLDDD 481 (494)
T ss_pred EEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC---CCCCCcccHHHHHHHHHHcCCEEEEEEC
Confidence 33333234456689999999999999998888644544421 1333566664 222346777777554
No 183
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=67.26 E-value=45 Score=38.03 Aligned_cols=90 Identities=21% Similarity=0.378 Sum_probs=48.1
Q ss_pred hhhhhhhhhhHHHHHHHHhHHh--HHHH---H-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGE--LQEE---R-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE---ERDRREREEEN 632 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~--~~~e---~-~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e---er~~~~~e~~~ 632 (666)
.++.+++.-..++++|.++-++ +-.+ + ++.++|..+++++|++.+++.|+-- .+... +...--.|.+.
T Consensus 3 d~k~ir~n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig---~~~~~~~~~~~~l~~e~~~ 79 (429)
T COG0172 3 DLKLIRENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIG---RALKRGEDDAEELIAEVKE 79 (429)
T ss_pred hHHHhhhCHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhccchhHHHHHHHHHH
Confidence 3677887556677888666321 1111 1 4555555555555555544444332 11111 12223345577
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 005993 633 LRKKIKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 633 lr~kl~~~~~~i~~~~~~~~~~ 654 (666)
|.++|+++.....++-++++.+
T Consensus 80 l~~~l~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 80 LKEKLKELEAALDELEAELDTL 101 (429)
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 7777777766666666666544
No 184
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=66.98 E-value=69 Score=39.16 Aligned_cols=94 Identities=23% Similarity=0.428 Sum_probs=71.6
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE---QESLIDIFAEERDRREREEENLRKKIK 638 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke---q~~li~~f~eer~~~~~e~~~lr~kl~ 638 (666)
=+..+..++.+++++|....++|..--..+--|.+.++.++..|++.+.. ...-|.-+.+|+.|--.|-+.|+..+.
T Consensus 309 ~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d 388 (775)
T PF10174_consen 309 RLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLD 388 (775)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677888899999999998777777777888888888888776542 234567789999999999999998888
Q ss_pred HHHHHHHHHHHHHhhhh
Q 005993 639 DASDTIQDLLDKIKLLE 655 (666)
Q Consensus 639 ~~~~~i~~~~~~~~~~~ 655 (666)
....-|..|..+|..++
T Consensus 389 ~~e~ki~~Lq~kie~Le 405 (775)
T PF10174_consen 389 KKERKINVLQKKIENLE 405 (775)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777766666654443
No 185
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.98 E-value=69 Score=34.43 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=19.1
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhH
Q 005993 562 NLGQLKQENHELKKRLEKKEGEL 584 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~ 584 (666)
+|.+|++|...||.+|..+...+
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~i 248 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLI 248 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHH
Confidence 58899999999999998776544
No 186
>PRK01156 chromosome segregation protein; Provisional
Probab=66.70 E-value=54 Score=39.85 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=17.6
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHhc
Q 005993 24 LWSFHCICFADNGGGMNPDKMRHCMSL 50 (666)
Q Consensus 24 ~~G~~~L~I~DDG~GMd~~el~~~msf 50 (666)
|..+..+.+-+||.|= ..+..||.|
T Consensus 21 f~~gi~~I~G~NGsGK--SsileAI~~ 45 (895)
T PRK01156 21 FDTGINIITGKNGAGK--SSIVDAIRF 45 (895)
T ss_pred cCCCeEEEECCCCCCH--HHHHHHHHH
Confidence 3455678888888884 567777764
No 187
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=66.66 E-value=75 Score=26.46 Aligned_cols=79 Identities=25% Similarity=0.464 Sum_probs=50.3
Q ss_pred hhhhhhhHHHHHHHHhHHh------------HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005993 565 QLKQENHELKKRLEKKEGE------------LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEEN 632 (666)
Q Consensus 565 ~~~~e~~~~~~~~~~~~~~------------~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~ 632 (666)
++.++-.+|..=|..++.. ++..+.+++.+...+...+.+++.++..-..|++.-.... ..
T Consensus 5 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~-------~~ 77 (105)
T PF00435_consen 5 QFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDS-------DE 77 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTH-------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcH-------HH
Confidence 3444555555555555555 3556688999999999999999999988888877654444 34
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005993 633 LRKKIKDASDTIQDLLDK 650 (666)
Q Consensus 633 lr~kl~~~~~~i~~~~~~ 650 (666)
++.++......-+.|.+.
T Consensus 78 i~~~~~~l~~~w~~l~~~ 95 (105)
T PF00435_consen 78 IQEKLEELNQRWEALCEL 95 (105)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 188
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=65.77 E-value=38 Score=32.53 Aligned_cols=87 Identities=24% Similarity=0.380 Sum_probs=48.4
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDR--REREEENLRKKIK 638 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~~--~~~e~~~lr~kl~ 638 (666)
-|..|.++..+|++++.+..++++.- .+.++.+.+++.+ -++.+-++--.++|.|.--... ...+..++.+-++
T Consensus 19 ~l~~l~~~~~~l~~~~~r~~ae~en~---~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~~~~~~~~~~~~~g~~ 95 (165)
T PF01025_consen 19 ELEELEKEIEELKERLLRLQAEFENY---RKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEAAKSNEEEESLLEGLE 95 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC-SHHCTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 37777777788888877777666532 2334444445444 3444444444444444333333 2334456666666
Q ss_pred HHHHHHHHHHHHH
Q 005993 639 DASDTIQDLLDKI 651 (666)
Q Consensus 639 ~~~~~i~~~~~~~ 651 (666)
--.+.|.++|++.
T Consensus 96 ~~~~~l~~~L~~~ 108 (165)
T PF01025_consen 96 MILKQLEDILEKN 108 (165)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHC
Confidence 6666666666554
No 189
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=65.59 E-value=60 Score=39.49 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=4.8
Q ss_pred HHHHHHHHhHHhH
Q 005993 572 ELKKRLEKKEGEL 584 (666)
Q Consensus 572 ~~~~~~~~~~~~~ 584 (666)
+.+.++.++-++|
T Consensus 508 ~~~~~~~~li~~L 520 (771)
T TIGR01069 508 EFKEEINVLIEKL 520 (771)
T ss_pred hhHHHHHHHHHHH
Confidence 3333333333333
No 190
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=65.41 E-value=77 Score=30.89 Aligned_cols=78 Identities=18% Similarity=0.185 Sum_probs=52.6
Q ss_pred hhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005993 566 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQ 645 (666)
Q Consensus 566 ~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~ 645 (666)
+..+|++|+-.+......+..-.....++..||..+++..++-+.+|..| +++-+....+|...-.+|.
T Consensus 17 ~~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~L-----------r~~~~~~~~~l~~re~~i~ 85 (135)
T TIGR03495 17 QSQRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQL-----------RQQLAQARALLAQREQRIE 85 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 35677888877777777776666667777777777777777666666655 3344556666666677788
Q ss_pred HHHHHHhhh
Q 005993 646 DLLDKIKLL 654 (666)
Q Consensus 646 ~~~~~~~~~ 654 (666)
+|+..-..+
T Consensus 86 rL~~ENe~l 94 (135)
T TIGR03495 86 RLKRENEDL 94 (135)
T ss_pred HHHHcCHHH
Confidence 877654433
No 191
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=65.20 E-value=56 Score=37.44 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 613 ESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 613 ~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
..+.+.+.+++..-..+...|..+++++-..|++|-.+|+++..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 130 FQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45666677777777777778888888888888888888887764
No 192
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=65.15 E-value=1.6e+02 Score=30.05 Aligned_cols=95 Identities=18% Similarity=0.274 Sum_probs=55.8
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKK--- 636 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~k--- 636 (666)
..|+.+|.+|.+|..--+.....+|+.=-.....-..-.+.++++++.|..-....-.-...-+..-..=...|..|
T Consensus 66 q~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qL 145 (188)
T PF05335_consen 66 QQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQL 145 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999888888777775554444444444555555555554433333333333233323333344444
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 005993 637 IKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 637 l~~~~~~i~~~~~~~~~~ 654 (666)
|..|-+-++.|..+|...
T Consensus 146 LeaAk~Rve~L~~QL~~A 163 (188)
T PF05335_consen 146 LEAAKRRVEELQRQLQAA 163 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777777777776543
No 193
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=65.11 E-value=1.2e+02 Score=30.09 Aligned_cols=59 Identities=19% Similarity=0.334 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 594 LEAQLKVMQQTIEE-LNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 594 l~~~~~~~~~~~~~-~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
|..+++.++++|.+ .++-+..+-==|.-||.|-..|...+..|+.+..+-|..-+..|+
T Consensus 85 L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr 144 (177)
T PF07798_consen 85 LQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLR 144 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443322 333333333345567777777777777777777776655554444
No 194
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=64.99 E-value=1.2e+02 Score=28.33 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=29.6
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 573 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF 619 (666)
Q Consensus 573 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f 619 (666)
|.+|=.+.++++..=.+.+...++.+.+++++|+++.+|-..+++--
T Consensus 34 l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a 80 (140)
T PRK07353 34 VEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEA 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544445566666777778888888877776666543
No 195
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=64.57 E-value=66 Score=34.55 Aligned_cols=62 Identities=10% Similarity=0.104 Sum_probs=29.5
Q ss_pred ccCccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 005993 553 FLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQES 614 (666)
Q Consensus 553 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~ 614 (666)
.|+...+..-+.+++.+....+..|...+..+..+......++.+++.++.+++.+.++-+.
T Consensus 78 ~ld~~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R 139 (346)
T PRK10476 78 RIDPRPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLER 139 (346)
T ss_pred EECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555444455555555555555544444333333333334445555555555555544433
No 196
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.52 E-value=66 Score=41.15 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=24.8
Q ss_pred hcccCCCCCCCcceEEEEECCCCCCHHHHHHHHh---cCCCCC
Q 005993 16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMS---LGYSAK 55 (666)
Q Consensus 16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~ms---fG~s~k 55 (666)
...|+| .....+.+-.||.|= ..+..||. ||...+
T Consensus 21 ~~~I~F---~~~~~~I~G~NGaGK--TTil~ai~~al~G~~~~ 58 (1311)
T TIGR00606 21 KQIIDF---FSPLTILVGPNGAGK--TTIIECLKYICTGDFPP 58 (1311)
T ss_pred ceeeec---ccceEEEECCCCCCH--HHHHHHHHHHhcCCCCC
Confidence 334554 355688899999996 68999996 676444
No 197
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=64.50 E-value=67 Score=38.18 Aligned_cols=80 Identities=30% Similarity=0.488 Sum_probs=39.4
Q ss_pred hhhhHHHHHHHHhHHhHHHHHH---hhhcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005993 568 QENHELKKRLEKKEGELQEERE---RCRSLEAQLKVMQQTIEELNKE-----QESLIDIFAEERDRREREEENLRKKIKD 639 (666)
Q Consensus 568 ~e~~~~~~~~~~~~~~~~~e~~---~~~~l~~~~~~~~~~~~~~~ke-----q~~li~~f~eer~~~~~e~~~lr~kl~~ 639 (666)
.||.+|+++|.++++++..... ..+-|++++-+..+++++..+. |+-+=.=++|--.-=-.|+.|+..+++.
T Consensus 121 ~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~ 200 (629)
T KOG0963|consen 121 EENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEE 200 (629)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999998765541 2222333332222222222110 0000000111001112356677788888
Q ss_pred HHHHHHHH
Q 005993 640 ASDTIQDL 647 (666)
Q Consensus 640 ~~~~i~~~ 647 (666)
+-.+|+.|
T Consensus 201 le~ki~~l 208 (629)
T KOG0963|consen 201 LEKKISSL 208 (629)
T ss_pred HHHHHHHH
Confidence 87777766
No 198
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=64.38 E-value=69 Score=37.07 Aligned_cols=65 Identities=22% Similarity=0.358 Sum_probs=50.5
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005993 591 CRSLEAQLKVMQQTIEELNKEQESL---IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 591 ~~~l~~~~~~~~~~~~~~~keq~~l---i~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~ 655 (666)
..++..+|+++...|+.++.|-..| ++.+--|=.+--.|-..|+.+...|+..|+.|-.+|+...
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r 350 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTR 350 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Confidence 4456667777777887777776655 4556677778888889999999999999999999887543
No 199
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=64.19 E-value=65 Score=31.65 Aligned_cols=67 Identities=24% Similarity=0.421 Sum_probs=50.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHH--------------HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQE--------------ERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRER 628 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~--------------e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~ 628 (666)
..||+-||..|.++|..+..+|.+ -++|...+..++..+++.|....++...+-+-+......|+.
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k 123 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDK 123 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999998888632 337777777888888888888887777777766665555544
Q ss_pred H
Q 005993 629 E 629 (666)
Q Consensus 629 e 629 (666)
-
T Consensus 124 ~ 124 (177)
T PF13870_consen 124 L 124 (177)
T ss_pred H
Confidence 3
No 200
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=64.18 E-value=6.7 Score=43.07 Aligned_cols=64 Identities=27% Similarity=0.366 Sum_probs=42.9
Q ss_pred cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccc---cccccCCeEEEEeee
Q 005993 17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT---STMRLGADVIVFSCC 86 (666)
Q Consensus 17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKT---gSMRLGkdviVfSK~ 86 (666)
+.|....-.+.-.|.|.|||.||+++.+.++..-+++.+. +..|.||.. -.-+.|-++.|-+..
T Consensus 457 I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~------~g~GlGL~iv~~iv~~~~G~i~v~s~~ 523 (542)
T PRK11086 457 ISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKG------SNRGVGLYLVKQSVENLGGSIAVESEP 523 (542)
T ss_pred EEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhCCCccCC------CCCcCcHHHHHHHHHHcCCEEEEEeCC
Confidence 3333333445668999999999999999998876666552 234888753 233566777776653
No 201
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=64.05 E-value=5.5 Score=47.12 Aligned_cols=70 Identities=11% Similarity=0.024 Sum_probs=45.1
Q ss_pred cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccc---ccccccCCeEEEEeee
Q 005993 17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCC 86 (666)
Q Consensus 17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfK---TgSMRLGkdviVfSK~ 86 (666)
++|....-.+.-.|.|.|||.||+++.+.+...-.++.+......-+..|.||. .-..+.|-.+.+-+..
T Consensus 619 I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~ 691 (703)
T TIGR03785 619 IEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYIVRLIADFHQGRIQAENRQ 691 (703)
T ss_pred EEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHHHHHHHHHcCCEEEEEECC
Confidence 334332334556799999999999999998886555443222223345788885 3344567777776664
No 202
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=63.85 E-value=97 Score=31.06 Aligned_cols=46 Identities=20% Similarity=0.337 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 605 IEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDK 650 (666)
Q Consensus 605 ~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~ 650 (666)
+++.-+|...+|+++..|-.---.+-..|..|+...-..=++|+++
T Consensus 135 l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 135 LEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555555555555555554444444444443
No 203
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=63.80 E-value=44 Score=38.22 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005993 628 REEENLRKKIKDASDTI 644 (666)
Q Consensus 628 ~e~~~lr~kl~~~~~~i 644 (666)
+|-|+||.-|+.|-..+
T Consensus 309 kelE~lR~~L~kAEkel 325 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKEL 325 (575)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56677777777665543
No 204
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=63.16 E-value=83 Score=33.06 Aligned_cols=87 Identities=31% Similarity=0.466 Sum_probs=49.3
Q ss_pred hhhhhHHHHHHHHhHHhH---HHHH----HhhhcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHH
Q 005993 567 KQENHELKKRLEKKEGEL---QEER----ERCRSLEAQLKVMQQTIEELNKE---QESLIDIFAEERDRREREEENLRKK 636 (666)
Q Consensus 567 ~~e~~~~~~~~~~~~~~~---~~e~----~~~~~l~~~~~~~~~~~~~~~ke---q~~li~~f~eer~~~~~e~~~lr~k 636 (666)
..+..+|.+||..+++++ +.++ ++-..|+++++.|+..-+.|.++ -+..+.-+..+...-..|.+.|..+
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e 83 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQE 83 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888885 2333 66667777776666644444444 3344445555555566677788888
Q ss_pred HHHHHHHHHHHHHHHhh
Q 005993 637 IKDASDTIQDLLDKIKL 653 (666)
Q Consensus 637 l~~~~~~i~~~~~~~~~ 653 (666)
+.++...|..|-+....
T Consensus 84 ~~e~~~~i~~l~ee~~~ 100 (246)
T PF00769_consen 84 LREAEAEIARLEEESER 100 (246)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888777665543
No 205
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=63.08 E-value=2.6 Score=45.17 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=41.4
Q ss_pred ccchhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccccccCCeEEEEeee
Q 005993 12 SKMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCC 86 (666)
Q Consensus 12 a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgSMRLGkdviVfSK~ 86 (666)
|+|..+.+.+..-.+.-+|.|.|||.|.|+++.- ..||= .|+|-=...+|..+.|-|..
T Consensus 295 a~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~~--~~~GL--------------~~mreRv~~lgG~l~i~S~~ 353 (365)
T COG4585 295 AQATEVRVTLERTDDELRLEVIDNGVGFDPDKEG--GGFGL--------------LGMRERVEALGGTLTIDSAP 353 (365)
T ss_pred cCCceEEEEEEEcCCEEEEEEEECCcCCCccccC--CCcch--------------hhHHHHHHHcCCEEEEEecC
Confidence 5666666666566777999999999999988754 11220 24444456688888888886
No 206
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=63.08 E-value=41 Score=40.06 Aligned_cols=67 Identities=27% Similarity=0.341 Sum_probs=46.4
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005993 571 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLL 648 (666)
Q Consensus 571 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~ 648 (666)
.+-++.|.-.||-||+|+-.+-+||+|--++-..+-+++= ..-+=||+++++|+ |+..+-+.||++-
T Consensus 149 e~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKL------kltalEkeq~e~E~-----K~R~se~l~qevn 215 (861)
T KOG1899|consen 149 EEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKL------KLTALEKEQNETEK-----KLRLSENLMQEVN 215 (861)
T ss_pred HHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHH------HHHHHHHHhhhHHH-----HHHhHHHHHHHHH
Confidence 4445667777888888888788888877666666655543 33445788888874 6777777777764
No 207
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=63.00 E-value=1.5e+02 Score=28.69 Aligned_cols=50 Identities=22% Similarity=0.171 Sum_probs=30.2
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 573 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 622 (666)
Q Consensus 573 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ee 622 (666)
|.+|=.+..+++..=-+..+..+..+++++++|.++.+|-..+++--.++
T Consensus 51 l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~ 100 (156)
T CHL00118 51 LDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKE 100 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444335556666777778888888888777766544333
No 208
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=62.86 E-value=7 Score=46.25 Aligned_cols=70 Identities=20% Similarity=0.154 Sum_probs=42.1
Q ss_pred ccchhcccCCCCCCCcceEEEEECCCCCCHHHH-------HHHHhcCC---CCCCCc---cccccccCCcccccccccCC
Q 005993 12 SKMLQLCSNLPSLWSFHCICFADNGGGMNPDKM-------RHCMSLGY---SAKSKA---ANTIGQYGNGFKTSTMRLGA 78 (666)
Q Consensus 12 a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el-------~~~msfG~---s~k~~~---~~~IGrYGnGfKTgSMRLGk 78 (666)
|+-+.+.|+- .| .+.|.|||.||+.+.- ..++ |+. +.+..+ ....|.-|.|+++.. .+..
T Consensus 51 a~~I~V~i~~---~g--~I~V~DnG~GIp~~~h~~~ki~~~e~i-~~~l~ag~kf~~~~~k~s~G~~G~gl~~in-alS~ 123 (654)
T TIGR01059 51 CDTINVTIND---DG--SVTVEDNGRGIPVDIHPEEGISAVEVV-LTVLHAGGKFDKDSYKVSGGLHGVGVSVVN-ALSE 123 (654)
T ss_pred CCEEEEEEeC---CC--cEEEEEeCCCcCccccCcCCCCchHHh-eeeecccCccCCCcceecCCccchhHHHHH-HhcC
Confidence 4455555542 23 3999999999987520 0111 111 112111 246899999998543 5667
Q ss_pred eEEEEeeecC
Q 005993 79 DVIVFSCCCG 88 (666)
Q Consensus 79 dviVfSK~~g 88 (666)
.+.|-|+.+|
T Consensus 124 ~l~v~~~~~g 133 (654)
T TIGR01059 124 WLEVTVFRDG 133 (654)
T ss_pred eEEEEEEECC
Confidence 7888888765
No 209
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=62.55 E-value=24 Score=40.56 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993 630 EENLRKKIKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 630 ~~~lr~kl~~~~~~i~~~~~~~~~~ 654 (666)
.+.+..||++-..+|+.|.+|++++
T Consensus 99 ~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 99 RGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455677888888888888888653
No 210
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=62.43 E-value=1.3e+02 Score=30.53 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=15.3
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHh
Q 005993 560 GANLGQLKQENHELKKRLEKKEGE 583 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~ 583 (666)
+..|..+++|...+=.+...+-++
T Consensus 83 GlLL~rvrde~~~~l~~y~~l~~s 106 (189)
T PF10211_consen 83 GLLLLRVRDEYRMTLDAYQTLYES 106 (189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777778777766665555444
No 211
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=62.32 E-value=1.3e+02 Score=29.57 Aligned_cols=47 Identities=28% Similarity=0.275 Sum_probs=31.6
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 573 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF 619 (666)
Q Consensus 573 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f 619 (666)
|.+|=.+...+|..=-+.++..+..+++++++|+++.+|-..+++--
T Consensus 48 l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a 94 (174)
T PRK07352 48 LEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADA 94 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454455555544446677777778888888888888887776543
No 212
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=62.19 E-value=99 Score=27.17 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005993 612 QESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKL 653 (666)
Q Consensus 612 q~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~ 653 (666)
-+.+++.+.+..+.-+.|.+.|.++++.....+.++-.+|++
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888999988888888888888874
No 213
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=61.84 E-value=15 Score=43.87 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=42.8
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHH-----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEER-----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 621 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~-----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e 621 (666)
-|..|+.||..|++||..+|+.-.... .-......++.+++.+|+.++|.-.-|.+||+.
T Consensus 567 ~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ 631 (722)
T PF05557_consen 567 TLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKA 631 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999988876533221 223344557889999999999999999999964
No 214
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=61.84 E-value=4.6 Score=46.84 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=42.0
Q ss_pred ccccchhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccc-ccccccCCeEEEEeeecC
Q 005993 10 SNSKMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK-TSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 10 ~~a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfK-TgSMRLGkdviVfSK~~g 88 (666)
|+|.-+.|.+.. -.|...+.|.|||+|+|.. +.+.|+||+-+= -=+=|||.++-|=.|..|
T Consensus 497 a~As~i~V~~~~--~~g~~~~~VeDnG~Gi~~~----------------~e~~gHyGL~IM~ERA~~L~~~L~i~~~~~g 558 (574)
T COG3850 497 AQASEIKVTVSQ--NDGQVTLTVEDNGVGIDEA----------------AEPSGHYGLNIMRERAQRLGGQLRIRRREGG 558 (574)
T ss_pred cccCeEEEEEEe--cCCeEEEEEeeCCcCCCCc----------------cCCCCCcchHHHHHHHHHhcCeEEEeecCCC
Confidence 344444444433 3499999999999999865 246789998762 233368888888888654
No 215
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=61.43 E-value=1.5e+02 Score=28.21 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=24.6
Q ss_pred HHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 575 KRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDI 618 (666)
Q Consensus 575 ~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~ 618 (666)
+|=.+..+++..=...+...+..+++++++|+++.+|...+++-
T Consensus 35 ~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~ 78 (156)
T PRK05759 35 ERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQ 78 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34333333333333455555666677777777777776665543
No 216
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=61.40 E-value=93 Score=35.25 Aligned_cols=88 Identities=24% Similarity=0.343 Sum_probs=54.7
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005993 559 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSL--EAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKK 636 (666)
Q Consensus 559 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l--~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~k 636 (666)
|+.-|.+.-.||.+|+.-=...|..|+...+-+..- |+|-.+|+-+-|-.++-|-+| ||..+-..|.++|.+-
T Consensus 290 Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaL-----EEKaaLrkerd~L~ke 364 (442)
T PF06637_consen 290 LRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLAL-----EEKAALRKERDSLAKE 364 (442)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 455588888999999877777777776555433332 444455555666666666665 5555555566666666
Q ss_pred HHHHHHHHHHHHHHH
Q 005993 637 IKDASDTIQDLLDKI 651 (666)
Q Consensus 637 l~~~~~~i~~~~~~~ 651 (666)
|++--.+.+.|..++
T Consensus 365 Leekkreleql~~q~ 379 (442)
T PF06637_consen 365 LEEKKRELEQLKMQL 379 (442)
T ss_pred HHHHHHHHHHHHHHH
Confidence 665555555554444
No 217
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=61.37 E-value=67 Score=31.00 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005993 606 EELNKEQESLIDIFAEE 622 (666)
Q Consensus 606 ~~~~keq~~li~~f~ee 622 (666)
.++.+||+-|.-+|+..
T Consensus 80 ~~~q~EldDLL~ll~Dl 96 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDL 96 (136)
T ss_pred HhhhhhHHHHHHHHHhH
Confidence 35677777777777753
No 218
>PRK10337 sensor protein QseC; Provisional
Probab=61.36 E-value=8.4 Score=41.57 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=38.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccc---cccccCCeEEEEeee
Q 005993 29 CICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT---STMRLGADVIVFSCC 86 (666)
Q Consensus 29 ~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKT---gSMRLGkdviVfSK~ 86 (666)
.|.|.|||.||+++++.+...-.+..+ ....+.+|.||.- -.-+.|.++.|-+..
T Consensus 382 ~i~i~D~G~Gi~~~~~~~if~~f~~~~---~~~~~g~GlGL~iv~~i~~~~gg~l~~~s~~ 439 (449)
T PRK10337 382 NFTVRDNGPGVTPEALARIGERFYRPP---GQEATGSGLGLSIVRRIAKLHGMNVSFGNAP 439 (449)
T ss_pred EEEEEECCCCCCHHHHHHhcccccCCC---CCCCCccchHHHHHHHHHHHcCCEEEEEecC
Confidence 699999999999999988875444322 1234558888763 334567777776654
No 219
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=61.34 E-value=1.6e+02 Score=28.50 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=23.2
Q ss_pred HHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 575 KRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617 (666)
Q Consensus 575 ~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~ 617 (666)
+|=.+..++|..=-+.+...++.+.+.+++|.++.+|-..+|+
T Consensus 39 ~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~ 81 (164)
T PRK14473 39 ERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVA 81 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433334443333344455555566666666776666666655
No 220
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=61.15 E-value=8.6 Score=46.44 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=43.4
Q ss_pred ccchhcccCCCCCCCcceEEEEECCCCCCHH----------HHHHHHhcCCCCCCCc---cccccccCCcccccccccCC
Q 005993 12 SKMLQLCSNLPSLWSFHCICFADNGGGMNPD----------KMRHCMSLGYSAKSKA---ANTIGQYGNGFKTSTMRLGA 78 (666)
Q Consensus 12 a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~----------el~~~msfG~s~k~~~---~~~IGrYGnGfKTgSMRLGk 78 (666)
|+.+.+.|+. .| .+.|.|||.||+.+ |+.-+. .-.+.|... .-..|.-|.|++... .+..
T Consensus 58 a~~I~V~i~~---dg--sIsV~DnGrGIPvd~h~~~g~~~~Elvlt~-lhAggKfd~~~ykvSgGlhGvG~svvN-AlS~ 130 (756)
T PRK14939 58 CDDITVTIHA---DG--SVSVSDNGRGIPTDIHPEEGVSAAEVIMTV-LHAGGKFDQNSYKVSGGLHGVGVSVVN-ALSE 130 (756)
T ss_pred CCEEEEEEcC---CC--eEEEEEcCCcccCCcccccCCchhhheeee-ecccCCCCCCcccccCCccCccceEee-hccC
Confidence 5556666653 23 79999999999887 443222 111122111 236889999997543 5667
Q ss_pred eEEEEeeecC
Q 005993 79 DVIVFSCCCG 88 (666)
Q Consensus 79 dviVfSK~~g 88 (666)
.+.|-++.+|
T Consensus 131 ~l~v~v~r~g 140 (756)
T PRK14939 131 WLELTIRRDG 140 (756)
T ss_pred eEEEEEEeCC
Confidence 7888888665
No 221
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=60.98 E-value=40 Score=36.26 Aligned_cols=83 Identities=24% Similarity=0.309 Sum_probs=61.9
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005993 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKI 637 (666)
Q Consensus 558 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl 637 (666)
.|.++++-|++....+++||...++...+++.+.+.--.+|.+++.+++.+.++-..|-.+|..=..|=.==|-.|+.=|
T Consensus 3 ~l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~~k~rG~wGE~~Le~iL 82 (304)
T PF02646_consen 3 QLEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALKNSKTRGNWGEMQLERIL 82 (304)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 45667888888888888888888888777775555444555666677799999999999999866666666667777766
Q ss_pred HHH
Q 005993 638 KDA 640 (666)
Q Consensus 638 ~~~ 640 (666)
+.+
T Consensus 83 e~~ 85 (304)
T PF02646_consen 83 EDS 85 (304)
T ss_pred HHc
Confidence 665
No 222
>PRK12705 hypothetical protein; Provisional
Probab=60.91 E-value=43 Score=38.95 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=22.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 610 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~k 610 (666)
+++.++|......||.++|+.|.+..+.....+.+|+..+++|+...+
T Consensus 72 ~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~ 119 (508)
T PRK12705 72 ARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSAREL 119 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555554444444444444444444443333
No 223
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=60.82 E-value=92 Score=35.93 Aligned_cols=92 Identities=23% Similarity=0.324 Sum_probs=53.1
Q ss_pred hhhhhhhhhHHHHHHHHhHHhH---HHHH--------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----
Q 005993 563 LGQLKQENHELKKRLEKKEGEL---QEER--------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE---- 627 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~---~~e~--------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~---- 627 (666)
+.+|++|...++|-+..++..+ .-|. ..+.++++++++++.++...... |+=+..+..|...-+
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~e~~l~~~el~~~~ee~~ 354 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT-EAELRLYYQELYHYREELS 354 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544 1111 55777778888888877666443 333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005993 628 REEENLRKKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 628 ~e~~~lr~kl~~~~~~i~~~~~~~~~~~ 655 (666)
+....+--|+++-.+.||-|..+|.+.-
T Consensus 355 ~~~s~~~~k~~~ke~E~q~lr~~l~~~~ 382 (511)
T PF09787_consen 355 RQKSPLQLKLKEKESEIQKLRNQLSARA 382 (511)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455677777888888888887644
No 224
>PRK14143 heat shock protein GrpE; Provisional
Probab=60.73 E-value=57 Score=34.45 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=9.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHh
Q 005993 563 LGQLKQENHELKKRLEKKEGE 583 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~ 583 (666)
|..|++|..+|+.++++..++
T Consensus 76 l~~l~~e~~elkd~~lR~~Ad 96 (238)
T PRK14143 76 LESLKQELEELNSQYMRIAAD 96 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 225
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.68 E-value=61 Score=40.56 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005993 614 SLIDIFAEERDRREREEENLRKKIKDASDTIQDLL 648 (666)
Q Consensus 614 ~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~ 648 (666)
+=|+--..+++.-.+|.+.+.+|+.+-...|..++
T Consensus 857 ~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~ 891 (1174)
T KOG0933|consen 857 AKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLL 891 (1174)
T ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhh
Confidence 33344444555555555555566655555554333
No 226
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=60.01 E-value=30 Score=30.79 Aligned_cols=42 Identities=38% Similarity=0.459 Sum_probs=25.6
Q ss_pred hhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 005993 566 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 611 (666)
Q Consensus 566 ~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke 611 (666)
|-++|.+|+..|..++++ +++.+.|...|..-=.+.-++||-
T Consensus 3 Li~qNk~L~~kL~~K~eE----I~rLn~lv~sLR~KLiKYt~Lnkk 44 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEE----IDRLNILVGSLRGKLIKYTELNKK 44 (76)
T ss_dssp ---HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999888765 455555555555544455555554
No 227
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=59.97 E-value=74 Score=38.85 Aligned_cols=85 Identities=31% Similarity=0.426 Sum_probs=52.5
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHH-------Hhhh-cHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005993 559 LGANLGQLKQENHELKKRLEKKEGELQEER-------ERCR-SLEA---QLKVMQQTIEELNKEQESLIDIFAEERDRRE 627 (666)
Q Consensus 559 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~-------~~~~-~l~~---~~~~~~~~~~~~~keq~~li~~f~eer~~~~ 627 (666)
|..+|..+|+||..|.+-++.++.+|.+-. .|.| .+++ .++..|=+||++.||.-.|--. -..||
T Consensus 460 llk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~it----lrQrD 535 (861)
T PF15254_consen 460 LLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGIT----LRQRD 535 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhH----HHHHH
Confidence 344567777888887777777777753322 2222 1222 2344556899999998766444 35788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 628 REEENLRKKIKDASDTIQDLLDKI 651 (666)
Q Consensus 628 ~e~~~lr~kl~~~~~~i~~~~~~~ 651 (666)
.|.+.|| |--.|+|.=+.+|
T Consensus 536 aEi~RL~----eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 536 AEIERLR----ELTRTLQNSMAKL 555 (861)
T ss_pred HHHHHHH----HHHHHHHHHHHHH
Confidence 8987665 4555666555554
No 228
>PRK01156 chromosome segregation protein; Provisional
Probab=59.89 E-value=74 Score=38.67 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=14.8
Q ss_pred EEEEEccccccCCceeecCCCCCCceeecCCcc
Q 005993 171 RIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNR 203 (666)
Q Consensus 171 ~III~NL~r~~~G~~ELDFdtD~~DI~I~g~~~ 203 (666)
.|.+.|.+-.. ...++|+. .=..|.|.+.
T Consensus 5 ~l~l~NF~s~~--~~~i~f~~--gi~~I~G~NG 33 (895)
T PRK01156 5 RIRLKNFLSHD--DSEIEFDT--GINIITGKNG 33 (895)
T ss_pred EEEEeCccCCC--CceEecCC--CeEEEECCCC
Confidence 45667766543 34667743 2224445444
No 229
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=59.80 E-value=11 Score=44.50 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=0.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcc---cccccccCCeEEEEeeecCCCCCCCceeE
Q 005993 29 CICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF---KTSTMRLGADVIVFSCCCGKDGKSPTRSI 98 (666)
Q Consensus 29 ~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGf---KTgSMRLGkdviVfSK~~g~~~~~~t~Si 98 (666)
.+.|.|+|.||+++++.+...--+..........|..|.|| |.-.-.+|-++.|-|...+ |...+.++
T Consensus 446 ~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~--Gt~f~i~l 516 (919)
T PRK11107 446 EVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNR--GSTFWFHL 516 (919)
T ss_pred EEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCC--CEEEEEEE
No 230
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.68 E-value=61 Score=39.22 Aligned_cols=14 Identities=14% Similarity=0.446 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 005993 631 ENLRKKIKDASDTI 644 (666)
Q Consensus 631 ~~lr~kl~~~~~~i 644 (666)
..|+..|+.+...+
T Consensus 649 ~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 649 QDLKASIEQLKKKL 662 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444433333
No 231
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=59.65 E-value=1e+02 Score=32.55 Aligned_cols=68 Identities=13% Similarity=0.179 Sum_probs=38.5
Q ss_pred CccCccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 552 HFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF 619 (666)
Q Consensus 552 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f 619 (666)
-.|+...+..-+.+++.+..++...+...+..+..-......++.+++.++.+++.++++-+..-..|
T Consensus 71 ~~ld~~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~ 138 (334)
T TIGR00998 71 VRLDPTNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLF 138 (334)
T ss_pred EEECchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34666656666666666666666666665555433223344555666666666666655555444433
No 232
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=59.56 E-value=96 Score=41.54 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=17.1
Q ss_pred CCCcceeEEEecc-cccccccc
Q 005993 325 SDGRGVIGVLEAN-FVEPAHDK 345 (666)
Q Consensus 325 s~GrGVIGVvEan-flePtHNK 345 (666)
..+.+.|||||.. |-.+-+|+
T Consensus 444 ~~~~~fIgvLDiaGFEIfe~nS 465 (1930)
T KOG0161|consen 444 QQRDYFIGVLDIAGFEIFEFNS 465 (1930)
T ss_pred cccCCcceeeeeccccccCcCC
Confidence 5788999999995 66677776
No 233
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=59.13 E-value=1.5e+02 Score=32.09 Aligned_cols=25 Identities=8% Similarity=0.275 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 005993 629 EEENLRKKIKDASDTIQDLLDKIKL 653 (666)
Q Consensus 629 e~~~lr~kl~~~~~~i~~~~~~~~~ 653 (666)
+-..++..|.++-..+..+..+++.
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666555543
No 234
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=59.09 E-value=56 Score=30.95 Aligned_cols=63 Identities=24% Similarity=0.421 Sum_probs=40.4
Q ss_pred hhcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHHHHHHHhhhh
Q 005993 591 CRSLEAQLKVMQQTI-EELNKEQESLIDIFAEERDRREREEENLRKKIKDAS--DTIQDLLDKIKLLE 655 (666)
Q Consensus 591 ~~~l~~~~~~~~~~~-~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~--~~i~~~~~~~~~~~ 655 (666)
.+.|+.++++++..- +..+-.-+--|--| ||..-..--..|+++|++++ ..+.+|..+|..++
T Consensus 30 L~~L~~~l~~~~~~~~~kk~~~kYh~VRFf--ERkKa~R~lkql~k~l~~~~~~~~~~~l~~~l~~~~ 95 (114)
T PF10153_consen 30 LEALKRELEEAERKEKEKKMAKKYHMVRFF--ERKKATRKLKQLEKKLEEAEDKKEIKELEKELHKLE 95 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 345666666655532 22333445566667 77777777888999998876 56677777776554
No 235
>PF14282 FlxA: FlxA-like protein
Probab=58.94 E-value=29 Score=31.98 Aligned_cols=51 Identities=24% Similarity=0.484 Sum_probs=40.3
Q ss_pred hhhhhhhhhhHHHHHHHHhHHh--H--HHHHHhhhcHHHHHHHHHHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGE--L--QEERERCRSLEAQLKVMQQTIEELNKEQ 612 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~--~--~~e~~~~~~l~~~~~~~~~~~~~~~keq 612 (666)
.|++|++....|.+.|..+..+ + .....+.+.|..|++.++.+|-.+..++
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999988873 2 3334788889999999998887776554
No 236
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=58.84 E-value=1.9e+02 Score=29.99 Aligned_cols=44 Identities=14% Similarity=0.281 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 609 NKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 609 ~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
|+..+.+++--.+|+++-.++.+++.+-..+..-.+.++++.|.
T Consensus 72 ~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 72 NEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433333333344444443
No 237
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=58.76 E-value=80 Score=31.64 Aligned_cols=70 Identities=19% Similarity=0.336 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHH
Q 005993 569 ENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEE-NLRKKIK 638 (666)
Q Consensus 569 e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~-~lr~kl~ 638 (666)
+....+..+.++...-...-+|...++.++.+++++.+.+.++=+.+-+.+-.|..|.+.|.. .++.-|.
T Consensus 143 ~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~ 213 (236)
T PF09325_consen 143 ELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLE 213 (236)
T ss_pred HHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444333233347788889999999999999999999999999999999988753 3444444
No 238
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=58.53 E-value=89 Score=36.20 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=27.4
Q ss_pred HHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005993 575 KRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKK 636 (666)
Q Consensus 575 ~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~k 636 (666)
+++...+++++..+..+..++.++.+++.++|+..+..+.-+..+.+-+.+-.+|=+||.++
T Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ 121 (475)
T PRK10361 60 AECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANR 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443333333444444444444444455444
No 239
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=58.47 E-value=10 Score=44.95 Aligned_cols=58 Identities=24% Similarity=0.190 Sum_probs=36.9
Q ss_pred eEEEEECCCCCCHHHHH-------HHHhcCC---CCCCCc---cccccccCCcccccccccCCeEEEEeeecC
Q 005993 29 CICFADNGGGMNPDKMR-------HCMSLGY---SAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 29 ~L~I~DDG~GMd~~el~-------~~msfG~---s~k~~~---~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
.+.|.|||.||+.+.-. .++ |+. +.+..+ ....|.-|.|+++.. .+...+.|-|+.+|
T Consensus 70 ~I~V~DnG~GIp~~~h~~~ki~~~e~i-~~~lhag~kfd~~~yk~s~G~~G~Gls~vn-alS~~~~v~t~r~g 140 (638)
T PRK05644 70 SITVTDNGRGIPVDIHPKTGKPAVEVV-LTVLHAGGKFGGGGYKVSGGLHGVGVSVVN-ALSTWLEVEVKRDG 140 (638)
T ss_pred cEEEEEeCccccCCccCCCCCCchHHh-eeeecccCccCCCcccccCCccccchhhhh-heeceEEEEEEeCC
Confidence 89999999999875211 111 221 112111 236899999998553 45677888888765
No 240
>PF14182 YgaB: YgaB-like protein
Probab=58.43 E-value=51 Score=29.55 Aligned_cols=32 Identities=28% Similarity=0.572 Sum_probs=24.3
Q ss_pred HHHHHHHhHHh--HHHHHHhhhcHHHHHHHHHHH
Q 005993 573 LKKRLEKKEGE--LQEERERCRSLEAQLKVMQQT 604 (666)
Q Consensus 573 ~~~~~~~~~~~--~~~e~~~~~~l~~~~~~~~~~ 604 (666)
..|-|+-|++= ||.|+|+|...|.+|.+++++
T Consensus 6 V~eQm~tMD~LL~LQsElERCqeIE~eL~~l~~e 39 (79)
T PF14182_consen 6 VSEQMKTMDKLLFLQSELERCQEIEKELKELERE 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666665 699999999999998777654
No 241
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=58.42 E-value=89 Score=31.96 Aligned_cols=86 Identities=16% Similarity=0.268 Sum_probs=42.8
Q ss_pred hhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005993 570 NHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL--------NKEQESLIDIFAEERDRREREEENLRKKIKDAS 641 (666)
Q Consensus 570 ~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~--------~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~ 641 (666)
..++.+-|.+....+-+-.-..+.|+.++.+++..++.. .+-.|.|-.-.-+++....+.-+.|..-+....
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~ 112 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVE 112 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554333344444444444444443332 223445555555555555555555555555555
Q ss_pred HHHHHHHHHHhhhh
Q 005993 642 DTIQDLLDKIKLLE 655 (666)
Q Consensus 642 ~~i~~~~~~~~~~~ 655 (666)
.+|+.|..+|..++
T Consensus 113 ~~v~~l~~~l~~L~ 126 (219)
T TIGR02977 113 ETLAKLQEDIAKLQ 126 (219)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555443
No 242
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=58.36 E-value=30 Score=30.03 Aligned_cols=18 Identities=44% Similarity=0.650 Sum_probs=13.5
Q ss_pred hhhhhhhhhHHHHHHHHh
Q 005993 563 LGQLKQENHELKKRLEKK 580 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~ 580 (666)
+..|=+||..|||-|..-
T Consensus 8 l~~LL~EN~~LKealrQ~ 25 (68)
T PF11577_consen 8 LQELLQENQDLKEALRQN 25 (68)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 667778888888777654
No 243
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=57.99 E-value=98 Score=34.87 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=21.9
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEER 588 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~ 588 (666)
.++-|.++..+++++|...|+.++.-+
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888999999999988886555
No 244
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=57.98 E-value=93 Score=38.10 Aligned_cols=48 Identities=31% Similarity=0.521 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHH
Q 005993 600 VMQQTIEELNKEQESLIDIFAEERDRREREE----ENLRKKIKDASDTIQDL 647 (666)
Q Consensus 600 ~~~~~~~~~~keq~~li~~f~eer~~~~~e~----~~lr~kl~~~~~~i~~~ 647 (666)
.+.-+||+++.|-+-+|.-+-+.|+|-++|. +.+++.+++.-.+|..|
T Consensus 433 ~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~L 484 (775)
T PF10174_consen 433 EALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESL 484 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6668999999999999999999988877544 44555555555555443
No 245
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=57.91 E-value=1.5e+02 Score=30.22 Aligned_cols=51 Identities=24% Similarity=0.188 Sum_probs=30.5
Q ss_pred HHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 574 KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624 (666)
Q Consensus 574 ~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~ 624 (666)
.+|=...++++..=-+.+...+..+++++++|+++..|-..+++---+|..
T Consensus 78 ~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe 128 (205)
T PRK06231 78 NKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEAL 128 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333555556666778888888888887777765444433
No 246
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=57.80 E-value=1.4e+02 Score=34.89 Aligned_cols=6 Identities=17% Similarity=0.490 Sum_probs=2.7
Q ss_pred chhhHH
Q 005993 135 SLDDWN 140 (666)
Q Consensus 135 ~~~dw~ 140 (666)
..+.|.
T Consensus 29 ~Le~~k 34 (560)
T PF06160_consen 29 ELEERK 34 (560)
T ss_pred HHHHHH
Confidence 344554
No 247
>PRK04863 mukB cell division protein MukB; Provisional
Probab=57.78 E-value=1.1e+02 Score=40.04 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=13.4
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHhH
Q 005993 561 ANLGQLKQENHELKKRLEKKEGEL 584 (666)
Q Consensus 561 ~~~~~~~~e~~~~~~~~~~~~~~~ 584 (666)
..+..+.++..+|.++|.+++.+.
T Consensus 307 ~nL~rI~diL~ELe~rL~kLEkQa 330 (1486)
T PRK04863 307 YRLVEMARELAELNEAESDLEQDY 330 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666655554
No 248
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=57.72 E-value=74 Score=35.16 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=19.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEER 588 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~ 588 (666)
++-|.++..+++++|...|..|+.=+
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr 198 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQ 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777888888888888775544
No 249
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=57.55 E-value=1.4e+02 Score=26.44 Aligned_cols=24 Identities=13% Similarity=0.447 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHH
Q 005993 605 IEELNKEQESLIDIFAEERDRRER 628 (666)
Q Consensus 605 ~~~~~keq~~li~~f~eer~~~~~ 628 (666)
|.+++++++.....+.+...+-..
T Consensus 63 l~~l~~~~~~~~~~l~~q~~~l~~ 86 (127)
T smart00502 63 LEDLEEQKENKLKVLEQQLESLTQ 86 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444454444444444444333
No 250
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=57.48 E-value=1.2e+02 Score=33.07 Aligned_cols=69 Identities=29% Similarity=0.402 Sum_probs=38.1
Q ss_pred hHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 005993 583 ELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK----KIKDASDTIQDLLDKI 651 (666)
Q Consensus 583 ~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~----kl~~~~~~i~~~~~~~ 651 (666)
.++.|++...+=-.+...+..+||.+=.|.----...-||-.++..|++.-|+ |+..+.+.||..++.-
T Consensus 54 ~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~ 126 (309)
T PF09728_consen 54 QLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQ 126 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555554444444455555566655444333344445676766666666554 5556666666666543
No 251
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=57.47 E-value=93 Score=30.86 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=15.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHH
Q 005993 619 FAEERDRREREEENLRKKIKD 639 (666)
Q Consensus 619 f~eer~~~~~e~~~lr~kl~~ 639 (666)
+.|=+.+-+.|..+||..++.
T Consensus 129 i~e~~~ki~~ei~~lr~~iE~ 149 (177)
T PF07798_consen 129 IQELNNKIDTEIANLRTEIES 149 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777788877774
No 252
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=57.31 E-value=62 Score=33.82 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005993 598 LKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 598 ~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~ 655 (666)
++|++++|--..=|-|+++..=.||..||+++...|.+=|+.|...=+|.-+|+..+-
T Consensus 3 ~EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 3 MEELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788877777888888888899999998888888888877777766666665443
No 253
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=57.17 E-value=7.3 Score=45.49 Aligned_cols=64 Identities=19% Similarity=0.160 Sum_probs=40.1
Q ss_pred cccCCCCCCCcceEEEEECCCCCCHHH-HHHHHhcCCCCCCCccccccccCCccccc---ccccCCeEEEEeee
Q 005993 17 LCSNLPSLWSFHCICFADNGGGMNPDK-MRHCMSLGYSAKSKAANTIGQYGNGFKTS---TMRLGADVIVFSCC 86 (666)
Q Consensus 17 ~~i~~~~~~G~~~L~I~DDG~GMd~~e-l~~~msfG~s~k~~~~~~IGrYGnGfKTg---SMRLGkdviVfSK~ 86 (666)
+.|....-.+...|.|.|||.||+++. ..+...-.++.+. +..|.|+..+ .-.+|-++.|-|..
T Consensus 601 I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~------~G~GLGL~i~~~iv~~~gG~i~v~s~~ 668 (679)
T TIGR02916 601 VAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG------AGMGIGVYECRQYVEEIGGRIEVESTP 668 (679)
T ss_pred EEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC------CCcchhHHHHHHHHHHcCCEEEEEecC
Confidence 444443334677899999999999998 4444443333321 3457777533 33477888777764
No 254
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=56.94 E-value=98 Score=32.53 Aligned_cols=44 Identities=27% Similarity=0.401 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhh
Q 005993 613 ESLIDIFAEERDRREREEENLRKKIKDASDTI-------QDLLDKIKLLEK 656 (666)
Q Consensus 613 ~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i-------~~~~~~~~~~~~ 656 (666)
|-+++.+--+=..||.+-..|.+-||+|--.+ .+-|..|+.+++
T Consensus 73 e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~A~k 123 (272)
T KOG4552|consen 73 EQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLKSIKEAEK 123 (272)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55777777777888888888888888775433 233455555554
No 255
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=56.72 E-value=1.1e+02 Score=34.41 Aligned_cols=62 Identities=18% Similarity=0.189 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005993 594 LEAQLKVMQQTIEELNKEQESLIDIFAEERDR------REREEENLRKKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 594 l~~~~~~~~~~~~~~~keq~~li~~f~eer~~------~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~ 655 (666)
|..++.+++.+++.+..+..+|.+.+.+-+.+ ...|-..|...++.+....+.|++++...+
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544444433 244566677777777777777777766543
No 256
>PRK14153 heat shock protein GrpE; Provisional
Probab=56.65 E-value=84 Score=32.28 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 005993 596 AQLKVMQQTIEEL 608 (666)
Q Consensus 596 ~~~~~~~~~~~~~ 608 (666)
.+++.++++++++
T Consensus 40 ~ei~~l~~e~~el 52 (194)
T PRK14153 40 SETEKCREEIESL 52 (194)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 257
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=56.48 E-value=71 Score=39.79 Aligned_cols=56 Identities=36% Similarity=0.472 Sum_probs=39.7
Q ss_pred HHHHHhhhcHHHHH----HHHHHHHHH-----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005993 585 QEERERCRSLEAQL----KVMQQTIEE-----LNKEQESLIDIFAEERDRREREEENLRKKIKDA 640 (666)
Q Consensus 585 ~~e~~~~~~l~~~~----~~~~~~~~~-----~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~ 640 (666)
.+|-.-|+-|.+|. ..||++-|+ ..++-+++|+-..||..|+.+||+..|.||+.-
T Consensus 809 ~~~a~~c~~ll~~a~~~~~~Aq~e~e~er~~kq~~~~~a~~~~~~ee~~r~~eee~~~r~~l~~q 873 (1018)
T KOG2002|consen 809 AQEAQLCKDLLKQALEHVAQAQEEDEEERRAKQEKEEEALIEKELEEARRKEEEEKARREKLEKQ 873 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44446677776665 334443322 235667899999999999999999999999843
No 258
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=56.28 E-value=1.7e+02 Score=33.91 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=14.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Q 005993 617 DIFAEERDRREREEENLRKKIKD 639 (666)
Q Consensus 617 ~~f~eer~~~~~e~~~lr~kl~~ 639 (666)
+...+||+.|-..-+.|+.+|+.
T Consensus 367 ~~v~~Er~~~~~~l~~~~~~~~~ 389 (582)
T PF09731_consen 367 EKVEQERNGRLAKLAELNSRLKA 389 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777666666666666553
No 259
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=56.26 E-value=22 Score=32.13 Aligned_cols=53 Identities=30% Similarity=0.455 Sum_probs=40.5
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHH---HhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEER---ERCRSLEAQLKVMQQTIEELNKEQESL 615 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~---~~~~~l~~~~~~~~~~~~~~~keq~~l 615 (666)
|..|.+.....+.||..++-.|..+- +.+++||.++..+..+++...|+-..|
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLL 62 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 66677788888999999998885544 788888888877777777766665555
No 260
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.21 E-value=88 Score=30.52 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=9.0
Q ss_pred hhhhhhhhhHHHHHHHHhHH
Q 005993 563 LGQLKQENHELKKRLEKKEG 582 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~ 582 (666)
+..|..|..+|++.|...+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~ 93 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKK 93 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 261
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=56.16 E-value=3.5e+02 Score=31.31 Aligned_cols=76 Identities=22% Similarity=0.364 Sum_probs=47.1
Q ss_pred hhhhhhhhhHHHHHHHHhH-Hh---H--H---HHH--HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKE-GE---L--Q---EER--ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEE 631 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~-~~---~--~---~e~--~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~ 631 (666)
+..+.+|...|+.+|.... +. + + +++ ++.++|.++|.+++..|..-+..-...+-.|-+.--..+.|-.
T Consensus 118 l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~ 197 (511)
T PF09787_consen 118 LQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQ 197 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666551 11 1 1 111 5558888888888887776665555666667666666676767
Q ss_pred HHHHHHH
Q 005993 632 NLRKKIK 638 (666)
Q Consensus 632 ~lr~kl~ 638 (666)
.|..+++
T Consensus 198 ~L~~~~~ 204 (511)
T PF09787_consen 198 ELEERPK 204 (511)
T ss_pred HHHHHHH
Confidence 7776666
No 262
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.04 E-value=52 Score=32.13 Aligned_cols=49 Identities=33% Similarity=0.529 Sum_probs=28.4
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHH--------HHH-HhhhcHHHHHHHHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQ--------EER-ERCRSLEAQLKVMQQTIEELNK 610 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~--------~e~-~~~~~l~~~~~~~~~~~~~~~k 610 (666)
-|.+|++|..+|+..+..++.+|. .|+ +....|+.+++.++.+|+.+..
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 377888888888887777777652 222 3344444444444444444443
No 263
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=56.02 E-value=1.6e+02 Score=30.93 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=5.1
Q ss_pred HHHHhhhHHHH
Q 005993 620 AEERDRREREE 630 (666)
Q Consensus 620 ~eer~~~~~e~ 630 (666)
-+||+++...-
T Consensus 73 ~~er~~~~~~i 83 (230)
T PF10146_consen 73 ESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHH
Confidence 44555544433
No 264
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=55.82 E-value=12 Score=44.84 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=40.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccc---ccccccCCeEEEEeee
Q 005993 26 SFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCC 86 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfK---TgSMRLGkdviVfSK~ 86 (666)
+.-.|.|.|||.||+++.+.++..-.++.+. +..|.||- ...-.+|-.+.|-|..
T Consensus 606 ~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~------~G~GLGL~i~~~iv~~~gG~i~v~s~~ 663 (828)
T PRK13837 606 RYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA------GGTGLGLATVHGIVSAHAGYIDVQSTV 663 (828)
T ss_pred CEEEEEEEECCCCCCHHHHHHhhCCcccCCC------CCCcchHHHHHHHHHHCCCEEEEEecC
Confidence 4457999999999999999988865554431 56788884 3344578888887764
No 265
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=55.76 E-value=49 Score=39.31 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=18.4
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGEL 584 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~ 584 (666)
+..++.|+.||++|+-.|..++..+
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~ei 452 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREI 452 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788888888888777766554
No 266
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=55.73 E-value=1.2e+02 Score=31.36 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 005993 634 RKKIKDASD 642 (666)
Q Consensus 634 r~kl~~~~~ 642 (666)
+++..||.|
T Consensus 157 ~K~~~eaan 165 (203)
T KOG3433|consen 157 EKTMAEAAN 165 (203)
T ss_pred HHHHHHHHh
Confidence 333344443
No 267
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=55.68 E-value=1.9e+02 Score=28.68 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=31.3
Q ss_pred HHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 572 ELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF 619 (666)
Q Consensus 572 ~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f 619 (666)
-|.+|=.+...++..=-+.....+..+.+++++|+++.+|-..+|+--
T Consensus 55 ~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A 102 (184)
T PRK13455 55 MLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAA 102 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555544445566667777888888888888877777643
No 268
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=55.68 E-value=1.9e+02 Score=30.01 Aligned_cols=44 Identities=27% Similarity=0.425 Sum_probs=24.2
Q ss_pred HHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 574 KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617 (666)
Q Consensus 574 ~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~ 617 (666)
.+|=++.+++|..=-+..+..+..+++++++|+++.+|...+++
T Consensus 35 ~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~ 78 (246)
T TIGR03321 35 DAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLT 78 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333344455566666666666666666665554
No 269
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=55.52 E-value=43 Score=36.57 Aligned_cols=52 Identities=13% Similarity=0.244 Sum_probs=22.3
Q ss_pred hhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 005993 564 GQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL 615 (666)
Q Consensus 564 ~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l 615 (666)
++|++.-.++++.+..+.+.-....+..+..+.++.+++.+++.++.+.+.+
T Consensus 2 ~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 53 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLL 53 (378)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544444443111111333444444445555555554444433
No 270
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=55.28 E-value=51 Score=32.40 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 005993 624 DRREREEENLRKKIKDASDTIQ 645 (666)
Q Consensus 624 ~~~~~e~~~lr~kl~~~~~~i~ 645 (666)
....++.++|+.|++.|...|+
T Consensus 155 ~~l~~~i~~l~rk~~~l~~~i~ 176 (177)
T PF13870_consen 155 EELRKEIKELERKVEILEMRIK 176 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3344556666666666666554
No 271
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=55.15 E-value=1.9e+02 Score=29.57 Aligned_cols=55 Identities=25% Similarity=0.410 Sum_probs=37.4
Q ss_pred cccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHH
Q 005993 557 CSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQ 612 (666)
Q Consensus 557 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq 612 (666)
.+|.. |=.|++.-..+.+.++++|..+.++-...+.+++.+.+++++|.++..+.
T Consensus 93 ~RL~k-LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~ 147 (190)
T PF05266_consen 93 SRLNK-LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQA 147 (190)
T ss_pred HHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444 44566666777777777777776665566777888888888888775443
No 272
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=54.86 E-value=63 Score=35.43 Aligned_cols=39 Identities=26% Similarity=0.427 Sum_probs=34.6
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE 627 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~ 627 (666)
.|||.+..+-+++++.|..+.--|..|..=+.|=++|-.
T Consensus 248 ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~ 286 (306)
T PF04849_consen 248 QRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYA 286 (306)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999888888777753
No 273
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.86 E-value=91 Score=39.68 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=20.0
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHH--hcCCCCC
Q 005993 24 LWSFHCICFADNGGGMNPDKMRHCM--SLGYSAK 55 (666)
Q Consensus 24 ~~G~~~L~I~DDG~GMd~~el~~~m--sfG~s~k 55 (666)
|--++.-.|-=||.|=+. ++++| =||+...
T Consensus 106 FHksFtaIvGPNGSGKSN--VIDsmLFVFGfRA~ 137 (1293)
T KOG0996|consen 106 FHKSFTAIVGPNGSGKSN--VIDSMLFVFGFRAS 137 (1293)
T ss_pred CCCCceeeECCCCCCchH--HHHHHHHHhhhhHh
Confidence 444556678889999654 56666 4787654
No 274
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=54.69 E-value=10 Score=45.04 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=0.0
Q ss_pred cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcc
Q 005993 17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 69 (666)
Q Consensus 17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGf 69 (666)
++|....-.+.-.|.|.|||.||+++++.+...--++.+. ..+..|.||
T Consensus 534 I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GLGL 582 (921)
T PRK15347 534 IRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADT----HSQGTGLGL 582 (921)
T ss_pred EEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCC----CCCCCchHH
No 275
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=54.52 E-value=2.5e+02 Score=28.49 Aligned_cols=8 Identities=38% Similarity=0.796 Sum_probs=2.9
Q ss_pred HHHHhHHh
Q 005993 576 RLEKKEGE 583 (666)
Q Consensus 576 ~~~~~~~~ 583 (666)
||..+|+.
T Consensus 86 rl~~rE~~ 93 (201)
T PF12072_consen 86 RLQQREEQ 93 (201)
T ss_pred HHHHHHHH
Confidence 33333333
No 276
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=54.40 E-value=56 Score=33.49 Aligned_cols=66 Identities=21% Similarity=0.359 Sum_probs=38.9
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHH-HHhhhhh
Q 005993 584 LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRER-----EEENLRKKIKDASDTIQDLLD-KIKLLEK 656 (666)
Q Consensus 584 ~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~-----e~~~lr~kl~~~~~~i~~~~~-~~~~~~~ 656 (666)
+|+-.+.|++|.++++++.|.+-+...+-+ -|...|+. +.--+|.+|-++-..+|++++ +++.+++
T Consensus 77 ~qk~~~~~~~l~~~~~~~kqdi~t~~e~i~-------~ek~~r~k~~Te~~~n~~~~~Ll~~~k~eqd~~k~~l~~l~~ 148 (209)
T COG5124 77 LQKLYDSSELLKKKIQEVKQDIATYKEEID-------KEKATRRKKFTEGQKNYNREALLEKRKKEQDEIKKKLNSLQK 148 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 345556777777777777777766554422 12222221 233466677777777777777 6766654
No 277
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=54.32 E-value=1.8e+02 Score=26.82 Aligned_cols=48 Identities=19% Similarity=0.157 Sum_probs=25.3
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHH
Q 005993 559 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIE 606 (666)
Q Consensus 559 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~ 606 (666)
|.++++.-+.+-...+..|......++...++...|.....+..+.++
T Consensus 4 L~~vl~lr~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 51 (141)
T TIGR02473 4 LQKLLDLREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQAL 51 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555544455555555555555555555555555555555554443
No 278
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=54.25 E-value=2.2e+02 Score=28.13 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=29.1
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 573 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 620 (666)
Q Consensus 573 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ 620 (666)
|.+|=.+..++++.=-+.....++.+++++++|+++.+|-..+++---
T Consensus 51 l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~ 98 (167)
T PRK08475 51 YKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAK 98 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444544444444443355556666677777788887777776665443
No 279
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=54.24 E-value=46 Score=35.20 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 005993 627 EREEENLRKKIK 638 (666)
Q Consensus 627 ~~e~~~lr~kl~ 638 (666)
..|...|..+++
T Consensus 176 e~E~s~LeE~~~ 187 (290)
T COG4026 176 EVENSRLEEMLK 187 (290)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 280
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=54.14 E-value=32 Score=29.67 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=25.8
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN 609 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ 609 (666)
..+|+.||..|++++...+++-. .|-++.+.|..++|.|.
T Consensus 16 ~~~L~~EN~~Lr~q~~~~~~ER~-------~L~ekne~Ar~rvEamI 55 (65)
T TIGR02449 16 LERLKSENRLLRAQEKTWREERA-------QLLEKNEQARQKVEAMI 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 56889999999988766655433 34455555555555443
No 281
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=53.84 E-value=2.1e+02 Score=27.54 Aligned_cols=44 Identities=7% Similarity=0.208 Sum_probs=22.8
Q ss_pred HHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 574 KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617 (666)
Q Consensus 574 ~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~ 617 (666)
.+|=.+..+++..=-+.+...+..+++++++|+++.+|-..+++
T Consensus 35 ~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~ 78 (159)
T PRK13461 35 DSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVE 78 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333344444555556666667766666555554
No 282
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=53.76 E-value=1.5e+02 Score=38.43 Aligned_cols=31 Identities=13% Similarity=0.079 Sum_probs=19.8
Q ss_pred CCCCcceEEEEECCCCCCH--HHHHHHHhcCCC
Q 005993 23 SLWSFHCICFADNGGGMNP--DKMRHCMSLGYS 53 (666)
Q Consensus 23 ~~~G~~~L~I~DDG~GMd~--~el~~~msfG~s 53 (666)
+|.+...+.+-.||+|=+- +-+.-+|-.|..
T Consensus 21 ~f~~g~~~~~G~NGsGKS~~lda~~~~ll~~~~ 53 (1353)
T TIGR02680 21 WFRDGRLLLRGNNGAGKSKVLELLLPFLLDGKL 53 (1353)
T ss_pred ecCCCeEEEECCCCCcHHHHHHHHHHHHhcCCC
Confidence 4567778888999999654 222444555644
No 283
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=53.53 E-value=7.9 Score=45.93 Aligned_cols=70 Identities=19% Similarity=0.270 Sum_probs=47.2
Q ss_pred ccchhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCC-CCCCc------cccccccCCcccccccccC--CeEEE
Q 005993 12 SKMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYS-AKSKA------ANTIGQYGNGFKTSTMRLG--ADVIV 82 (666)
Q Consensus 12 a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s-~k~~~------~~~IGrYGnGfKTgSMRLG--kdviV 82 (666)
|-|.++.|.++|. |...+.|.|||+|+++....- |..-|. .|-.. -.+.|=-|--| -+|| .+|+|
T Consensus 35 AGAT~I~I~~kdy-G~d~IEV~DNG~GI~~~n~~~-l~lkh~TSKi~~f~Dl~~l~T~GFRGEAL----SsLCa~~dv~I 108 (672)
T KOG1978|consen 35 AGATAIDIKVKDY-GSDSIEVSDNGSGISATDFEG-LALKHTTSKIVSFADLAVLFTLGFRGEAL----SSLCALGDVMI 108 (672)
T ss_pred cCCceeeEecCCC-CcceEEEecCCCCCCccchhh-hhhhhhhhcccchhhhhhhhhhhhHHHHH----HhhhhccceEE
Confidence 5678888999777 999999999999999877533 422221 11111 13455555555 3455 79999
Q ss_pred Eeeec
Q 005993 83 FSCCC 87 (666)
Q Consensus 83 fSK~~ 87 (666)
.||+.
T Consensus 109 ~Trt~ 113 (672)
T KOG1978|consen 109 STRSH 113 (672)
T ss_pred EEeec
Confidence 99985
No 284
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=53.43 E-value=33 Score=32.94 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 005993 625 RREREEENLRKKIKDASDTIQ 645 (666)
Q Consensus 625 ~~~~e~~~lr~kl~~~~~~i~ 645 (666)
.-..|||.|+.+|+.-...+.
T Consensus 104 ~l~~eEe~L~~~le~l~~~l~ 124 (141)
T PF13874_consen 104 ALSPEEEELRKRLEALEAQLN 124 (141)
T ss_dssp ---------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHc
Confidence 356899999999986555443
No 285
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=53.24 E-value=38 Score=32.81 Aligned_cols=78 Identities=24% Similarity=0.370 Sum_probs=51.5
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDAS 641 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~ 641 (666)
++.+| +..++||.+-.++..... -....|..++++.|. +.+.-|.++.-+..|=+.+|-|...||.||.++.
T Consensus 50 vVsEL-~~Ls~LK~~y~~~~~~~~---~~~~~l~a~~~e~qs----li~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 50 VVSEL-RRLSELKRRYRKKQSDPS---PQVARLAAEIQEQQS----LIKTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred HHHHH-HHHHHHHHHHHcCCCCCC---ccccccccchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 345777777776665533 222345555555443 4445567777788888999999999999999887
Q ss_pred HHHHHH
Q 005993 642 DTIQDL 647 (666)
Q Consensus 642 ~~i~~~ 647 (666)
..=..|
T Consensus 122 ~~n~~L 127 (131)
T PF04859_consen 122 RANKSL 127 (131)
T ss_pred HHHHHh
Confidence 654333
No 286
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=53.00 E-value=2.6e+02 Score=28.32 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 005993 602 QQTIEELNKEQESL 615 (666)
Q Consensus 602 ~~~~~~~~keq~~l 615 (666)
.++.+.+++....|
T Consensus 95 ~~~~~~L~~~e~~l 108 (201)
T PF12072_consen 95 DRRLEQLEKREEEL 108 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444443333
No 287
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=52.93 E-value=27 Score=33.62 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=6.2
Q ss_pred hhhhhhhhhHHHHHHH
Q 005993 563 LGQLKQENHELKKRLE 578 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~ 578 (666)
+..|+++..+|.+.+.
T Consensus 13 ~~~~~~~l~~l~~~~~ 28 (165)
T PF01025_consen 13 IEELEEELEELEKEIE 28 (165)
T ss_dssp HCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444333333
No 288
>PRK10815 sensor protein PhoQ; Provisional
Probab=52.84 E-value=16 Score=41.12 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=37.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccccc---ccccCCeEEEEeee
Q 005993 26 SFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS---TMRLGADVIVFSCC 86 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTg---SMRLGkdviVfSK~ 86 (666)
+...|.|.|||.||+++++.+...-++.... .-+-+|.||.-+ --.+|-++.|-+..
T Consensus 407 ~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~----~~~G~GLGL~Ivk~iv~~~gG~i~v~s~~ 466 (485)
T PRK10815 407 EHLHIVVEDDGPGIPESKRELIFDRGQRADT----LRPGQGLGLSVAREITEQYEGKISAGDSP 466 (485)
T ss_pred CEEEEEEEECCCCcCHHHHHHHhCCcccCCC----CCCCcchhHHHHHHHHHHcCCEEEEEECC
Confidence 4457999999999999999887654443221 123468888632 23466677776654
No 289
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=52.84 E-value=1.3e+02 Score=31.04 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=32.4
Q ss_pred cCccccchhhhhhhhhhhHHHHHHHHhH-------HhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 005993 554 LSDCSLGANLGQLKQENHELKKRLEKKE-------GELQEERERCRSLEAQLKVMQQTIEELNK 610 (666)
Q Consensus 554 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~-------~~~~~e~~~~~~l~~~~~~~~~~~~~~~k 610 (666)
|--+++..+|.+|-+-+-=-+|++.-.- +-++.-.-.|..|+++|++..|++-++.+
T Consensus 39 Iv~~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~a~~~~ks~~qeLe~~L~~~~qk~~tl~e 102 (203)
T KOG3433|consen 39 IVWQTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSEAICDRKSVLQELESQLATGSQKKATLGE 102 (203)
T ss_pred eehhHHHHHHHHHhccchHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Confidence 4444455567677666666666664331 22333345666667777666666666554
No 290
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=52.83 E-value=1.6e+02 Score=35.06 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005993 625 RREREEENLRKKIKDASDTIQDLLDKIKL 653 (666)
Q Consensus 625 ~~~~e~~~lr~kl~~~~~~i~~~~~~~~~ 653 (666)
+.-+|.+++|.++++....|+.--+.++.
T Consensus 444 ~~~~~ik~~r~~~k~~~~e~~~Kee~~~q 472 (594)
T PF05667_consen 444 QKLQEIKELREEIKEIEEEIRQKEELYKQ 472 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466777888888877777654444443
No 291
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.68 E-value=79 Score=27.98 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=22.7
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLI 616 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li 616 (666)
+|+.+|..++++||...|.+..|.+.|-
T Consensus 32 Eknn~l~~e~q~~q~~reaL~~eneqlk 59 (79)
T COG3074 32 EKNNSLSQEVQNAQHQREALERENEQLK 59 (79)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888887777764
No 292
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=52.61 E-value=1.1e+02 Score=34.92 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=36.8
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 584 LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLD 649 (666)
Q Consensus 584 ~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~ 649 (666)
+++|+++-.....+.++-.++|+..-|+|+.=|+-..+++.+-..+...++++|.++-..|+.|-.
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 344443333333334444455555555566666666666666666666777777766666654443
No 293
>PRK13557 histidine kinase; Provisional
Probab=52.34 E-value=20 Score=39.19 Aligned_cols=56 Identities=23% Similarity=0.377 Sum_probs=40.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccc---ccccccCCeEEEEeee
Q 005993 27 FHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCC 86 (666)
Q Consensus 27 ~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfK---TgSMRLGkdviVfSK~ 86 (666)
...|.|.|||.||+++...++....++.+. ..+..|.||- ...-.+|-.+.|-+..
T Consensus 324 ~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~----~~~g~GlGL~i~~~~v~~~gG~i~~~s~~ 382 (540)
T PRK13557 324 YVSIAVTDTGSGMPPEILARVMDPFFTTKE----EGKGTGLGLSMVYGFAKQSGGAVRIYSEV 382 (540)
T ss_pred EEEEEEEcCCCCCCHHHHHhccCCCcccCC----CCCCCCccHHHHHHHHHHCCCEEEEEecC
Confidence 347999999999999999888865555432 2345577764 4455688888888775
No 294
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=52.10 E-value=28 Score=37.97 Aligned_cols=72 Identities=31% Similarity=0.426 Sum_probs=38.1
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 642 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~ 642 (666)
++-++++..++.+.|...++.|..-.++...|+.+|+.++.++++..+|+..| ..+.+....||.-|..
T Consensus 216 V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l-----------~~~~~~~~~kl~rA~~ 284 (344)
T PF12777_consen 216 VEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQEL-----------EEEIEETERKLERAEK 284 (344)
T ss_dssp CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhccHHH
Confidence 33344444444444444444444444445555555555555555555544443 4455566667777766
Q ss_pred HHH
Q 005993 643 TIQ 645 (666)
Q Consensus 643 ~i~ 645 (666)
-|.
T Consensus 285 Li~ 287 (344)
T PF12777_consen 285 LIS 287 (344)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
No 295
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=51.93 E-value=2.4e+02 Score=28.04 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=26.2
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 573 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDI 618 (666)
Q Consensus 573 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~ 618 (666)
|.+|=.....++..=-+.....+..+.+++.+|+++.++...+++-
T Consensus 53 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~ 98 (184)
T CHL00019 53 LDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVN 98 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333455556666677777777777777666553
No 296
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=51.91 E-value=2.7e+02 Score=28.12 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=14.8
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLID 617 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~ 617 (666)
.+-..++.++..++++++++...-+.|.+
T Consensus 91 ~~k~~~e~~~~~l~~~~~~~~~~~~~l~~ 119 (221)
T PF04012_consen 91 QRKADLEEQAERLEQQLDQAEAQVEKLKE 119 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554444443
No 297
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.82 E-value=1.5e+02 Score=31.94 Aligned_cols=70 Identities=26% Similarity=0.371 Sum_probs=53.9
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK 635 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~ 635 (666)
||++++++ +.+|..++..+..+++....|-..++..+++|+.-..||..||.-..-+-+--..|...|.+
T Consensus 149 ile~qk~d----k~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~~ 218 (265)
T COG3883 149 ILEQQKED----KKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALEE 218 (265)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 67777665 45566678888888888888888888888888888889999988877776666666666653
No 298
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=51.67 E-value=1.7e+02 Score=30.51 Aligned_cols=38 Identities=21% Similarity=0.407 Sum_probs=28.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993 617 DIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 617 ~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~ 654 (666)
+....|=.|+..|.+.||.|+-.-...|++|-+.+..+
T Consensus 69 E~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 69 EVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 35566677788888888888887777777777776654
No 299
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=51.62 E-value=1.6e+02 Score=35.12 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 005993 635 KKIKDASDTIQDLLDKIKL 653 (666)
Q Consensus 635 ~kl~~~~~~i~~~~~~~~~ 653 (666)
.+++..-..|+++.+.++.
T Consensus 447 ~~ik~~r~~~k~~~~e~~~ 465 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQ 465 (594)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555543
No 300
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=51.45 E-value=2.3e+02 Score=31.08 Aligned_cols=53 Identities=19% Similarity=0.427 Sum_probs=24.1
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
+++..|-.++.++..++.++.-+-..|++=+ ..||.|..+--.++|+|...++
T Consensus 41 ekRdeln~kvrE~~e~~~elr~~rdeineev-----------~elK~kR~ein~kl~eL~~~~~ 93 (294)
T COG1340 41 EKRDELNAKVRELREKAQELREERDEINEEV-----------QELKEKRDEINAKLQELRKEYR 93 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444 4444444444444444444443
No 301
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=51.32 E-value=1.4e+02 Score=29.03 Aligned_cols=77 Identities=21% Similarity=0.379 Sum_probs=51.2
Q ss_pred HHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005993 576 RLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE----------------QESLIDIFAEERDRREREEENLRKKIKD 639 (666)
Q Consensus 576 ~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke----------------q~~li~~f~eer~~~~~e~~~lr~kl~~ 639 (666)
|+..+...+..|+..-|...+-|++|-..|+-++.+ |+.|-+-+-|-..+-+.+-+.|+.+++.
T Consensus 27 rl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~ 106 (131)
T KOG1760|consen 27 RLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELES 106 (131)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445544444555556666666666666 6666666666667777888889999998
Q ss_pred HHHHHHHHHHHHh
Q 005993 640 ASDTIQDLLDKIK 652 (666)
Q Consensus 640 ~~~~i~~~~~~~~ 652 (666)
-+..+++|...|=
T Consensus 107 I~~~m~~LK~~LY 119 (131)
T KOG1760|consen 107 ISARMDELKKVLY 119 (131)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888876664
No 302
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=51.10 E-value=1.8e+02 Score=36.77 Aligned_cols=82 Identities=22% Similarity=0.353 Sum_probs=47.5
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHh----HH------H--HH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGE----LQ------E--ER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER 623 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~----~~------~--e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer 623 (666)
-++||.|-.|..-||.+|.-..+- +. . |+ ++++.|+.+++.++.+|+.+.--+-...++-.+-.
T Consensus 403 ~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~ 482 (1041)
T KOG0243|consen 403 KTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLK 482 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 367999999999999998765543 11 1 22 45555555555555555554433333333333555
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 005993 624 DRREREEENLRKKIKDAS 641 (666)
Q Consensus 624 ~~~~~e~~~lr~kl~~~~ 641 (666)
.+-++=+++|.++.++-.
T Consensus 483 ~~~~~~k~~L~~~~~el~ 500 (1041)
T KOG0243|consen 483 EEKEKLKSKLQNKNKELE 500 (1041)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555666666655443
No 303
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=50.68 E-value=2.4e+02 Score=30.46 Aligned_cols=50 Identities=34% Similarity=0.488 Sum_probs=40.1
Q ss_pred hHHHHHHHHhHHhHH--------HHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 571 HELKKRLEKKEGELQ--------EER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 620 (666)
Q Consensus 571 ~~~~~~~~~~~~~~~--------~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ 620 (666)
-+|..||.++|-.|. .|+ +|.+.|..|+++|+.=-|.++.-+.++-+|++
T Consensus 157 LsLs~RLaRve~aL~~~~~~~~~~Er~~L~~k~~~L~~Q~edAk~LKe~~drRe~~v~~iL~ 218 (264)
T PF08687_consen 157 LSLSGRLARVENALSSLDEDADPEERESLLEKRRLLQRQLEDAKELKENLDRRERVVSEILA 218 (264)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 789999999998861 344 78888888888888877778888888887775
No 304
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=50.45 E-value=2.6e+02 Score=30.46 Aligned_cols=38 Identities=29% Similarity=0.382 Sum_probs=25.4
Q ss_pred hhhhhhhhHHHHHHHHhHHhH-HHHH-----HhhhcHHHHHHHH
Q 005993 564 GQLKQENHELKKRLEKKEGEL-QEER-----ERCRSLEAQLKVM 601 (666)
Q Consensus 564 ~~~~~e~~~~~~~~~~~~~~~-~~e~-----~~~~~l~~~~~~~ 601 (666)
.+|.+||.+|+++|+..-+.. .+|. -+-+.|+.||-+|
T Consensus 131 ~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~A 174 (309)
T PF09728_consen 131 IKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEA 174 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 348899999999999776653 2232 4556666666444
No 305
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=50.40 E-value=38 Score=29.87 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=39.3
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhHHhHHH-----HHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 005993 558 SLGANLGQLKQENHELKKRLEKKEGELQE-----ERERCRSLEAQLKVMQQTIEELNKEQESL 615 (666)
Q Consensus 558 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-----e~~~~~~l~~~~~~~~~~~~~~~keq~~l 615 (666)
.|..+|+.|.+|..-++-.+..+.+.+.+ -..+++.|+..|+.+..++|.-...=..|
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888777777666555421 22678888888888888887654443444
No 306
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=50.29 E-value=2.3e+02 Score=26.87 Aligned_cols=50 Identities=20% Similarity=0.173 Sum_probs=28.0
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHH
Q 005993 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEE 607 (666)
Q Consensus 558 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~ 607 (666)
+|.+||..=.++-...+..|.+....++.+..+...|+....+.++++.+
T Consensus 6 rL~~vL~l~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~ 55 (146)
T PRK07720 6 RLQKVLELKENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEE 55 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555554444445555555555555555556666666666666665544
No 307
>PRK13411 molecular chaperone DnaK; Provisional
Probab=50.23 E-value=1.1e+02 Score=36.31 Aligned_cols=64 Identities=9% Similarity=0.115 Sum_probs=37.2
Q ss_pred HhhhcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 589 ERCRSLEAQLKVMQQTIEE-----LNKEQESLIDIFAEERDRR---EREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~-----~~keq~~li~~f~eer~~~---~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
+....||.-+..++++|++ ...|.+.+.+...+-++-= +.+.+.+++|+++..+.++.+..++-
T Consensus 529 eakN~lEs~iy~~r~~l~~~~~~~~~~er~~i~~~l~~~~~wL~~~~~~~~~~~~~~~el~~~~~~i~~~~y 600 (653)
T PRK13411 529 ELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDPNISLEELKQQLEEFQQALLAIGAEVY 600 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777753 1222233333333322222 22456788888888888888887763
No 308
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=50.21 E-value=1.7e+02 Score=31.24 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=9.6
Q ss_pred HhhhcHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEE 607 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~ 607 (666)
++++++++++..+.++++.
T Consensus 236 ~~~~~~ee~~~~L~ekme~ 254 (297)
T PF02841_consen 236 QQERSYEEHIKQLKEKMEE 254 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444443
No 309
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=50.15 E-value=66 Score=37.32 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=37.1
Q ss_pred HHHHHhhhcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005993 585 QEERERCRSLEAQL----KVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKD 639 (666)
Q Consensus 585 ~~e~~~~~~l~~~~----~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~ 639 (666)
+..++..+.+..+| +-.+-+|-+++++=+-+-++=++|-...+.|-|.|.++|-+
T Consensus 486 ee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~ 544 (622)
T COG5185 486 EEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELND 544 (622)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443 33444666778888888888888888899999998887754
No 310
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=50.02 E-value=57 Score=34.74 Aligned_cols=43 Identities=28% Similarity=0.462 Sum_probs=34.2
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 571 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI 616 (666)
Q Consensus 571 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li 616 (666)
.+-+||..|--+-+++.|++.|..+ .+++.++.+|.||+++|.
T Consensus 193 ~~y~err~rNN~A~~kSR~~~k~~~---~e~~~r~~~leken~~lr 235 (269)
T KOG3119|consen 193 PEYKERRRRNNEAVRKSRDKRKQKE---DEMAHRVAELEKENEALR 235 (269)
T ss_pred HHHHHHHHhhhHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4556777777788888898888777 677888889999888874
No 311
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=49.99 E-value=2.7e+02 Score=27.53 Aligned_cols=84 Identities=20% Similarity=0.306 Sum_probs=52.8
Q ss_pred hHHHHHHHHhH---HhHHHHHHhhhcHHHHHHHHHHHHHHHHHHH---HH------------------------------
Q 005993 571 HELKKRLEKKE---GELQEERERCRSLEAQLKVMQQTIEELNKEQ---ES------------------------------ 614 (666)
Q Consensus 571 ~~~~~~~~~~~---~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq---~~------------------------------ 614 (666)
.+|-..|+..+ +.|+++++-...+...++.+..+|+.+.... |.
T Consensus 9 e~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~a 88 (145)
T COG1730 9 EELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYA 88 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceee
Confidence 33444444433 3467888888888888888888888887766 33
Q ss_pred ------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993 615 ------LIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 615 ------li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~ 654 (666)
-|+++....+.=+...+.|...|.+.+.+|++|..++.++
T Consensus 89 e~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 89 EKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566666666667776666665543
No 312
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=49.90 E-value=2e+02 Score=25.99 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005993 633 LRKKIKDASDTIQDLLD 649 (666)
Q Consensus 633 lr~kl~~~~~~i~~~~~ 649 (666)
+-.+|+.|..+|+.+|+
T Consensus 72 vs~rL~~a~e~Ir~vL~ 88 (89)
T PF13747_consen 72 VSRRLDSAIETIRAVLD 88 (89)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44566677777776664
No 313
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=49.90 E-value=2.1e+02 Score=26.25 Aligned_cols=36 Identities=19% Similarity=0.443 Sum_probs=25.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 621 EERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 621 eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
..+.....|-+.|+..|...-..|+.+-++|.....
T Consensus 74 k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 74 KKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677778888888888888888777775543
No 314
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=49.88 E-value=1.1e+02 Score=35.89 Aligned_cols=35 Identities=23% Similarity=0.496 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhH
Q 005993 593 SLEAQLKVMQQTIEELNKEQESLIDIF----AEERDRRE 627 (666)
Q Consensus 593 ~l~~~~~~~~~~~~~~~keq~~li~~f----~eer~~~~ 627 (666)
.|...|++.+.+|+..+++|+.+-+-+ -+|+..|+
T Consensus 379 ~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are 417 (570)
T COG4477 379 ELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARE 417 (570)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455667888888888888886554444 44444443
No 315
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.84 E-value=3.1e+02 Score=29.72 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=20.1
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhH
Q 005993 559 LGANLGQLKQENHELKKRLEKKEGEL 584 (666)
Q Consensus 559 ~~~~~~~~~~e~~~~~~~~~~~~~~~ 584 (666)
+.+.|++|++|.-+|++||..+++.|
T Consensus 78 ~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 78 SKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668888888888888888777764
No 316
>PRK14158 heat shock protein GrpE; Provisional
Probab=49.80 E-value=1.2e+02 Score=31.27 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=38.8
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDRR-EREEENLRKKIKDA 640 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~~~-~~e~~~lr~kl~~~ 640 (666)
|..|++|..+|++++.+..+++.- =+|-.+.+.+++.+ -++.+-+.--.++|-|.--..-- +.+.+++..-++-.
T Consensus 49 l~~le~e~~el~d~~lR~~AefeN---~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~i~~Gv~mi 125 (194)
T PRK14158 49 LAAKEAEAAANWDKYLRERADLEN---YRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHADEESMSAIIEGIRMT 125 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccCcchHHHHHHHHHHH
Confidence 444555555555555555544432 22333444444444 44445454444555553222211 11234455555555
Q ss_pred HHHHHHHHHHH
Q 005993 641 SDTIQDLLDKI 651 (666)
Q Consensus 641 ~~~i~~~~~~~ 651 (666)
.+.+..+|++.
T Consensus 126 ~k~l~~vLek~ 136 (194)
T PRK14158 126 LSMLLSTLKKF 136 (194)
T ss_pred HHHHHHHHHHC
Confidence 55555555544
No 317
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=49.65 E-value=2e+02 Score=33.20 Aligned_cols=93 Identities=23% Similarity=0.259 Sum_probs=53.5
Q ss_pred hhhhhhhhhHHHHHHHHhHHh----------HHHHHH------------hhhcHHHHHHHHHHHHHHHHHHHHHH-----
Q 005993 563 LGQLKQENHELKKRLEKKEGE----------LQEERE------------RCRSLEAQLKVMQQTIEELNKEQESL----- 615 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~----------~~~e~~------------~~~~l~~~~~~~~~~~~~~~keq~~l----- 615 (666)
|+-..|+..+|.+||.+-.++ |++.++ .|..+..+||.++-+|+++.||-|+=
T Consensus 254 Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAEkele~nS~wsa 333 (575)
T KOG4403|consen 254 LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKAEKELEANSSWSA 333 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 556677888888888877665 222221 12222245666777788888877642
Q ss_pred HHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005993 616 IDIF-AEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 616 i~~f-~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~ 655 (666)
=+++ .=-+--.+-|.+++.+|-..|-..++.-.|-...+.
T Consensus 334 P~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklk 374 (575)
T KOG4403|consen 334 PLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLK 374 (575)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 0111 111334566777888887777776665554444333
No 318
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=49.32 E-value=3.3e+02 Score=28.99 Aligned_cols=91 Identities=21% Similarity=0.292 Sum_probs=55.1
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhc----------------------HHHHHHHH-------HHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEERERCRS----------------------LEAQLKVM-------QQTIEELNKEQ 612 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~----------------------l~~~~~~~-------~~~~~~~~keq 612 (666)
.|..|++-..+-|..+..++.+--+|..|+|+ +..+|..| ++.|||. |.
T Consensus 98 lI~pLe~k~E~wkk~~~~ldKd~~k~~kk~R~elKk~~~dt~klqkk~rKg~~~~~~~ldsa~~dvn~k~~~lEe~--ek 175 (231)
T cd07643 98 LVNPLQEKIEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKARKGKGDLQPQLDSAMQDVNDKYLLLEET--EK 175 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHH--HH
Confidence 35566666666677777777776555555542 12222222 2223333 67
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHH------HHHHHHHHHHhhh
Q 005993 613 ESLIDIFAEERDRREREEENLRKKIKDAS------DTIQDLLDKIKLL 654 (666)
Q Consensus 613 ~~li~~f~eer~~~~~e~~~lr~kl~~~~------~~i~~~~~~~~~~ 654 (666)
.+|-+++-|||.|.--=.-.|+-=|.+-. ..+|++++.|..+
T Consensus 176 ~alR~aLiEER~Rfc~Fvs~l~pVl~~e~~ml~E~~hl~~~~~~l~~~ 223 (231)
T cd07643 176 KAVRNALIEERGRFCTFVSFLKPVLDEEISMLGEVTHLQTIMEDLASL 223 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 79999999999999776666665555332 3457777766644
No 319
>PRK11519 tyrosine kinase; Provisional
Probab=49.32 E-value=84 Score=37.64 Aligned_cols=29 Identities=31% Similarity=0.376 Sum_probs=18.6
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhh
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERC 591 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~ 591 (666)
+.-|+++..+++.+|...|..|+.=+.++
T Consensus 269 ~~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55666777777777777777765544333
No 320
>PRK14141 heat shock protein GrpE; Provisional
Probab=49.27 E-value=2.1e+02 Score=29.85 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=53.6
Q ss_pred cccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh--------H
Q 005993 557 CSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDRR--------E 627 (666)
Q Consensus 557 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~~~--------~ 627 (666)
.+++.-|..|++|..+|++++.+..+++.-=+ |-++.+.+++.+ -++.+-++---++|-|.--..-- +
T Consensus 34 ~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~R---KR~~kE~e~~~~~a~~~~~~dLLpViDnLerAl~~~~~~~~~~~~ 110 (209)
T PRK14141 34 DPEPDPLEALKAENAELKDRMLRLAAEMENLR---KRTQRDVADARAYGIAGFARDMLSVSDNLRRALDAIPAEARAAAD 110 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhccccccccccc
Confidence 44566699999999999999999888764322 223334444433 55555555555666553221110 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 628 REEENLRKKIKDASDTIQDLLDKI 651 (666)
Q Consensus 628 ~e~~~lr~kl~~~~~~i~~~~~~~ 651 (666)
.+.+++..-++--.+.+..+|++.
T Consensus 111 ~~~~~l~eGv~mi~k~l~~vLek~ 134 (209)
T PRK14141 111 AGLKALIEGVEMTERAMLNALERH 134 (209)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHC
Confidence 234556555555555556666554
No 321
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=49.27 E-value=8.9 Score=36.92 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=21.4
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHh
Q 005993 24 LWSFHCICFADNGGGMNPDKMRHCMS 49 (666)
Q Consensus 24 ~~G~~~L~I~DDG~GMd~~el~~~ms 49 (666)
-.+...+.|.|+|.||+++.+..++.
T Consensus 74 ~~~~l~i~V~D~G~g~d~~~~~~~~~ 99 (161)
T PRK04069 74 YEDRLEIVVADNGVSFDYETLKSKLG 99 (161)
T ss_pred ECCEEEEEEEECCcCCChHHhccccC
Confidence 35678999999999999988776654
No 322
>PHA02675 ORF104 fusion protein; Provisional
Probab=49.21 E-value=65 Score=29.29 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=37.2
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 005993 571 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQE 613 (666)
Q Consensus 571 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~ 613 (666)
.+|++||-.++.+.+.=.+.|+.+.+.|.-+++-+|++.+---
T Consensus 33 esle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml 75 (90)
T PHA02675 33 ESVEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALL 75 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999988888789999999999999999999876543
No 323
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=49.09 E-value=19 Score=42.96 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcc
Q 005993 25 WSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 69 (666)
Q Consensus 25 ~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGf 69 (666)
.+...|.|.|||.||+++++.+...-.+...... |..|.||
T Consensus 590 ~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~----~g~GLGL 630 (914)
T PRK11466 590 GEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKR----GGTGLGL 630 (914)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHhchhhcCCCCC----CCCcccH
No 324
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=49.03 E-value=68 Score=28.70 Aligned_cols=54 Identities=24% Similarity=0.385 Sum_probs=34.0
Q ss_pred HHHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005993 584 LQEER-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 638 (666)
Q Consensus 584 ~~~e~-~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~ 638 (666)
+.+|+ ..|++|+.+|+++++.+.-+.+.-+.- .|=.+|-.+|.+=...+|.+++
T Consensus 40 ~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF-~l~~~Ei~~Rr~fv~~~~~~i~ 94 (97)
T PF09177_consen 40 LKRELRNALQSIEWDLEDLEEAVRIVEKNPSKF-NLSEEEISRRRQFVSAIRNQIK 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-T-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-CCCHHHHHHHHHHHHHHHHHHH
Confidence 44555 667777888888777766654443332 4446677777777777766665
No 325
>PHA00728 hypothetical protein
Probab=48.86 E-value=14 Score=35.60 Aligned_cols=26 Identities=42% Similarity=0.606 Sum_probs=22.1
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHhHHH
Q 005993 561 ANLGQLKQENHELKKRLEKKEGELQE 586 (666)
Q Consensus 561 ~~~~~~~~e~~~~~~~~~~~~~~~~~ 586 (666)
|-+.||++||.|||..|.++|.-+-.
T Consensus 5 teveql~keneelkkkla~leal~nn 30 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEALMNN 30 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 34899999999999999999876643
No 326
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=48.71 E-value=1.7e+02 Score=34.92 Aligned_cols=87 Identities=28% Similarity=0.380 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHhHHhH------------------------HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 564 GQLKQENHELKKRLEKKEGEL------------------------QEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF 619 (666)
Q Consensus 564 ~~~~~e~~~~~~~~~~~~~~~------------------------~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f 619 (666)
.+|-..|.+.++||...|..+ ++-+.-|+.|..||.++|..+-.++++--.|.+.+
T Consensus 111 e~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~l 190 (617)
T PF15070_consen 111 EQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSAL 190 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHH
Q ss_pred HHHHhhh----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 620 AEERDRR----------EREEENLRKKIKDASDTIQDLLDK 650 (666)
Q Consensus 620 ~eer~~~----------~~e~~~lr~kl~~~~~~i~~~~~~ 650 (666)
.-|.-.. ..+-.+++.+|+.-+..++.|-++
T Consensus 191 q~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q 231 (617)
T PF15070_consen 191 QSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQ 231 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
No 327
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.53 E-value=1.3e+02 Score=38.31 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=12.1
Q ss_pred ccceeEEecCccccchh
Q 005993 301 VQGFNVYHKNRLIKPFW 317 (666)
Q Consensus 301 ~qGf~VYhkNRLIk~y~ 317 (666)
..||-+=||.=||.-.+
T Consensus 217 ~~gIDleHNRFLILQGE 233 (1293)
T KOG0996|consen 217 SHGIDLEHNRFLILQGE 233 (1293)
T ss_pred hcCCCCccceeeeehhh
Confidence 46777877777776654
No 328
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=48.38 E-value=2.8e+02 Score=30.43 Aligned_cols=16 Identities=13% Similarity=0.488 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 005993 594 LEAQLKVMQQTIEELN 609 (666)
Q Consensus 594 l~~~~~~~~~~~~~~~ 609 (666)
+-++++++..+..+.|
T Consensus 67 ineev~elK~kR~ein 82 (294)
T COG1340 67 INEEVQELKEKRDEIN 82 (294)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 329
>CHL00094 dnaK heat shock protein 70
Probab=48.29 E-value=1.2e+02 Score=35.62 Aligned_cols=83 Identities=13% Similarity=0.256 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHhHHh--HHHHH-HhhhcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHH
Q 005993 569 ENHELKKRLEKKEGE--LQEER-ERCRSLEAQLKVMQQTIEE-----LNKEQESLIDIFAEERDRRE-REEENLRKKIKD 639 (666)
Q Consensus 569 e~~~~~~~~~~~~~~--~~~e~-~~~~~l~~~~~~~~~~~~~-----~~keq~~li~~f~eer~~~~-~e~~~lr~kl~~ 639 (666)
|..++++++..++.. ..+++ +....||.-+..++++|++ ...|.+.|.+...+-++-=. ..++..++|+++
T Consensus 506 ~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~ 585 (621)
T CHL00094 506 EVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKKEKIENLIKKLRQALQNDNYESIKSLLEE 585 (621)
T ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 344444444433322 23333 5666677777777777753 12233333333333222211 134677777777
Q ss_pred HHHHHHHHHHHH
Q 005993 640 ASDTIQDLLDKI 651 (666)
Q Consensus 640 ~~~~i~~~~~~~ 651 (666)
..+.++.+..++
T Consensus 586 l~~~~~~~~~kl 597 (621)
T CHL00094 586 LQKALMEIGKEV 597 (621)
T ss_pred HHHHHHHHHHHH
Confidence 777777777765
No 330
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=48.08 E-value=1.2e+02 Score=30.76 Aligned_cols=41 Identities=34% Similarity=0.460 Sum_probs=33.9
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRERE 629 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e 629 (666)
+|...++.+++++++..+++.++=+.+-+..-+|-.|.+.|
T Consensus 143 ~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~ 183 (216)
T cd07627 143 EKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERE 183 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667888888888888888888888888888888888755
No 331
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=48.03 E-value=83 Score=29.65 Aligned_cols=48 Identities=25% Similarity=0.445 Sum_probs=30.5
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDA 640 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~ 640 (666)
++-..|+.|+..+.++++++.+.-..|+ ||=.+=..|-++||.+|.+.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~----EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELL----EENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555443333 56667778889999999875
No 332
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=47.97 E-value=2.9e+02 Score=27.39 Aligned_cols=45 Identities=9% Similarity=0.186 Sum_probs=24.7
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 573 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617 (666)
Q Consensus 573 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~ 617 (666)
|.+|-.+..++|..=-..++.++.-+++.+.+|.++.+|-..+|+
T Consensus 33 LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~ 77 (154)
T PRK06568 33 LDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIE 77 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554333333444455556666677777777666443
No 333
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=47.93 E-value=2.2e+02 Score=31.46 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993 627 EREEENLRKKIKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 627 ~~e~~~lr~kl~~~~~~i~~~~~~~~~~ 654 (666)
..|-+.|...++-+-..-..|++++...
T Consensus 341 ~~~~~~L~r~~~~~~~~y~~ll~r~~e~ 368 (444)
T TIGR03017 341 RDEMSVLQRDVENAQRAYDAAMQRYTQT 368 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666666777666544
No 334
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=47.92 E-value=92 Score=29.10 Aligned_cols=50 Identities=34% Similarity=0.555 Sum_probs=29.6
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 642 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~ 642 (666)
+....|++++..+.++++++.+.-..|+ ||=.+=..|-+.||..|.+...
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~----EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELL----EENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555555555555554433333 5666667788888888876544
No 335
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=47.88 E-value=1.8e+02 Score=25.49 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005993 595 EAQLKVMQQTIEELNKEQESLIDIFAEERDR 625 (666)
Q Consensus 595 ~~~~~~~~~~~~~~~keq~~li~~f~eer~~ 625 (666)
.--|+.+..++.++.+.|+.|++....|...
T Consensus 13 ~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~ 43 (92)
T PF14712_consen 13 EPDLDRLDQQLQELRQSQEELLQQIDRLNEK 43 (92)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555444443
No 336
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=47.66 E-value=1.8e+02 Score=38.91 Aligned_cols=66 Identities=15% Similarity=0.277 Sum_probs=44.0
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~ 654 (666)
....+++.++.+++.-|..++++++.=++=|-+-+..++.--++.+..+.++-+-++.++..|..+
T Consensus 798 ~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~ 863 (1822)
T KOG4674|consen 798 ATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSV 863 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777777777776666666666666666677766666666666555555433
No 337
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=47.56 E-value=2.9e+02 Score=27.25 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=17.4
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLID 617 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~ 617 (666)
+.+...+..+++.+++|.++.+|...+++
T Consensus 63 ~~~~eA~~~~~e~e~~l~~a~~ea~~ii~ 91 (173)
T PRK13453 63 QAKLNAQKLEEENKQKLKETQEEVQKILE 91 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556666677766666665554
No 338
>PRK14155 heat shock protein GrpE; Provisional
Probab=47.38 E-value=2.5e+02 Score=29.17 Aligned_cols=93 Identities=12% Similarity=0.179 Sum_probs=52.6
Q ss_pred cccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh-----HHHH
Q 005993 557 CSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDRR-----EREE 630 (666)
Q Consensus 557 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~~~-----~~e~ 630 (666)
..+..-|..|++|..+|++++++..++++-=+ |-.+.+.+++.+ -++.+-+.---++|-|---.+-- +.+.
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~R---KR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~~ 92 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTK---RRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKDSADPAV 92 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhcccccccchHH
Confidence 44455688899999999999998888764322 223333333333 45555555555555553222211 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 005993 631 ENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 631 ~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
+++..-++--.+.+..+|++..
T Consensus 93 ~~i~~Gvemi~k~~~~~L~k~G 114 (208)
T PRK14155 93 KNFIIGVEMTEKELLGAFERNG 114 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
Confidence 5666666666666666666543
No 339
>PRK14140 heat shock protein GrpE; Provisional
Probab=47.36 E-value=2.9e+02 Score=28.34 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=40.0
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh----HHHHH
Q 005993 561 ANLGQLKQENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDRR----EREEE 631 (666)
Q Consensus 561 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~~~----~~e~~ 631 (666)
+.|.+|+++..+|++++..++..+.+-+ .=+|-.+.+.+++.. -++.+-+.---++|-| ||... +.+..
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnL--erAl~~~~~~~~~~ 114 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNF--ERALQIEADDEQTK 114 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccCccchHH
Confidence 3444444444444444444433332222 122233333333333 4555555555556655 33322 12234
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 005993 632 NLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 632 ~lr~kl~~~~~~i~~~~~~~~ 652 (666)
++..-++--.+.+..+|++..
T Consensus 115 ~i~~Gv~mi~k~l~~~L~k~G 135 (191)
T PRK14140 115 SLLKGVEMVHRQLLEALKKEG 135 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHCC
Confidence 555555555555555555543
No 340
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=46.07 E-value=2.1e+02 Score=33.30 Aligned_cols=80 Identities=24% Similarity=0.403 Sum_probs=47.1
Q ss_pred hhhhhhhhhhHHHHHHHHhHHh-HHHH---------H-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGE-LQEE---------R-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREE 630 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~-~~~e---------~-~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~ 630 (666)
-+..|..|...||+-|...... .+-+ + ..+..++..|++++.+++.|+++- ..-
T Consensus 173 kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~---------------~~~ 237 (522)
T PF05701_consen 173 KVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL---------------EAA 237 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH
Confidence 3677888888888888765432 1111 1 333444455555555555555543 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 631 ENLRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 631 ~~lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
.+|..||..++.-|..|-.+|.....
T Consensus 238 k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 238 KDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888877777777665543
No 341
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.05 E-value=2e+02 Score=35.46 Aligned_cols=9 Identities=33% Similarity=0.796 Sum_probs=6.9
Q ss_pred ccccccccc
Q 005993 337 NFVEPAHDK 345 (666)
Q Consensus 337 nflePtHNK 345 (666)
+|-.|.|||
T Consensus 186 eWAVp~~~k 194 (1118)
T KOG1029|consen 186 EWAVPQHNK 194 (1118)
T ss_pred hccccchhh
Confidence 677788887
No 342
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=45.90 E-value=35 Score=42.44 Aligned_cols=44 Identities=23% Similarity=0.407 Sum_probs=25.0
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 611 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke 611 (666)
+|..|++|...|++-|.. .|..+...|+++|++.++-|+|+++-
T Consensus 365 virElReEve~lr~qL~~------ae~~~~~el~e~l~esekli~ei~~t 408 (1714)
T KOG0241|consen 365 VIRELREEVEKLREQLEQ------AEAMKLPELKEKLEESEKLIKEITVT 408 (1714)
T ss_pred HHHHHHHHHHHHHHHHhh------hhhccchHHHHHHHHHHHHHHHHHhH
Confidence 354444444444444433 25566666777777777777666654
No 343
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=45.87 E-value=1.7e+02 Score=25.37 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 005993 635 KKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 635 ~kl~~~~~~i~~~~~~~~~~~ 655 (666)
..|-+|-..|++|.+.+.++.
T Consensus 40 ~~l~~a~~e~~~Lk~E~e~L~ 60 (69)
T PF14197_consen 40 RQLGDAYEENNKLKEENEALR 60 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555443
No 344
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=45.71 E-value=1.5e+02 Score=34.98 Aligned_cols=88 Identities=22% Similarity=0.366 Sum_probs=59.0
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhH---HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGEL---QEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 638 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~---~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~ 638 (666)
.|..+|..|.-||+-+..+.++- ..|+..-+.++.+|+++.+.+.+..+.+++=--.||+=++. -+.+++-|+
T Consensus 317 ~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~----l~~~~~~l~ 392 (570)
T COG4477 317 YLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDN----LEEIEKALT 392 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHH----HHHHHHHHH
Confidence 38999999999999999988883 67777788888888888888877777766655566655543 233444444
Q ss_pred HHHHHHHHHHHHHhh
Q 005993 639 DASDTIQDLLDKIKL 653 (666)
Q Consensus 639 ~~~~~i~~~~~~~~~ 653 (666)
+-.+.+.++-+.|+.
T Consensus 393 ~i~~~q~~~~e~L~~ 407 (570)
T COG4477 393 DIEDEQEKVQEHLTS 407 (570)
T ss_pred HHhhhHHHHHHHHHH
Confidence 444444333333333
No 345
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=45.56 E-value=3.4e+02 Score=28.58 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=16.1
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDI 618 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~ 618 (666)
++....+..+++++++++++.+|...+++-
T Consensus 50 ~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~ 79 (250)
T PRK14474 50 QRQQEAGQEAERYRQKQQSLEQQRASFMAQ 79 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555666666666665555543
No 346
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=45.42 E-value=3.4e+02 Score=29.92 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 005993 611 EQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMK 658 (666)
Q Consensus 611 eq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~~ 658 (666)
.|.-.-|||..=|.-...+.--|..|-|+-.+.-..|.|++-..|+-|
T Consensus 254 iQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyEkEK 301 (305)
T PF14915_consen 254 IQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYEKEK 301 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 355566677776666666666678888999999999999998888655
No 347
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=45.19 E-value=94 Score=26.54 Aligned_cols=39 Identities=31% Similarity=0.496 Sum_probs=16.4
Q ss_pred HHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 005993 572 ELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 610 (666)
Q Consensus 572 ~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~k 610 (666)
+++|||.+.|..+..-.++-..||.+...++++++.+++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~ 41 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNK 41 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555433223333334333333333333333
No 348
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=45.05 E-value=97 Score=37.01 Aligned_cols=37 Identities=8% Similarity=0.140 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hcCCCCcc
Q 005993 627 EREEENLRKKIKDASDTIQDLLDKIKLLE---KMKTPSIR 663 (666)
Q Consensus 627 ~~e~~~lr~kl~~~~~~i~~~~~~~~~~~---~~~~~~~~ 663 (666)
.+|-..|....+.+-..-+.||+++...+ .++.++++
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~~~~~~~~~ 414 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAASRQNYVPVDAR 414 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcE
Confidence 33444555555555555566666665543 33444443
No 349
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=45.01 E-value=20 Score=30.05 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=22.1
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhHHhHHH
Q 005993 558 SLGANLGQLKQENHELKKRLEKKEGELQE 586 (666)
Q Consensus 558 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 586 (666)
+|.+.|..++.||.+|++.+.++++..+.
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666788888888888888888887643
No 350
>PRK14141 heat shock protein GrpE; Provisional
Probab=45.00 E-value=1.3e+02 Score=31.34 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005993 594 LEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK 635 (666)
Q Consensus 594 l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~ 635 (666)
|+.+++.+++++++++.....+.-=|-.-|.|-.+|.+.+++
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~ 77 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARA 77 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333333355556666666666554
No 351
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=44.97 E-value=3.1e+02 Score=31.93 Aligned_cols=38 Identities=11% Similarity=0.277 Sum_probs=19.9
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRR 626 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~ 626 (666)
..|..++++++.+++.+.++.-+...|---+.++|...
T Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~ 97 (475)
T PRK10361 60 AECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHA 97 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555665555555555555555544444444443
No 352
>KOG2701 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.84 E-value=2.5e+02 Score=33.61 Aligned_cols=82 Identities=18% Similarity=0.159 Sum_probs=61.4
Q ss_pred hHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 580 KEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID--------IFAEERDRREREEENLRKKIKDASDTIQDLLDKI 651 (666)
Q Consensus 580 ~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~--------~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~ 651 (666)
.+.....|.+....+-++..+++.++..++|+|+.+-. +..+=+++-.++++-++.-.+-++.+++++-.-.
T Consensus 311 e~~~~~e~~d~~~~~~~r~~e~~~r~~a~dk~~~~~~~~~~~~~~~~vq~li~l~~~~~e~~sae~E~~~rc~~~~~nl~ 390 (608)
T KOG2701|consen 311 EEMFFDEEADSYNERKKREAELEYRLRALDKYQEFLESTSDERDPDFVQKLISLTQMEEELKSAEAEFKVRCRSDLANLQ 390 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445777788888889999999999999999998754 3455577888899999999999999988765444
Q ss_pred hhhhhcCCCC
Q 005993 652 KLLEKMKTPS 661 (666)
Q Consensus 652 ~~~~~~~~~~ 661 (666)
.+.++.++|+
T Consensus 391 ~qi~Dl~~~~ 400 (608)
T KOG2701|consen 391 DQIRDLKSPK 400 (608)
T ss_pred HHHHhhhccc
Confidence 4444444443
No 353
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=44.71 E-value=3.2e+02 Score=26.89 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=26.5
Q ss_pred HHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 574 KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDI 618 (666)
Q Consensus 574 ~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~ 618 (666)
.+|=.+..+++..=-+.+...++.+++++++|+++.+|-..+++-
T Consensus 48 ~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~ 92 (175)
T PRK14472 48 EEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIRE 92 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344344444433333455556666677778888888777766654
No 354
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=44.32 E-value=2.4e+02 Score=25.85 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=18.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005993 616 IDIFAEERDRREREEENLRKKIKDASDTIQDLL 648 (666)
Q Consensus 616 i~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~ 648 (666)
|+...+...+-+...+-|++++++.-..|++++
T Consensus 76 ~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 76 KETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444555555666666666666666655
No 355
>PRK11546 zraP zinc resistance protein; Provisional
Probab=44.25 E-value=88 Score=30.83 Aligned_cols=64 Identities=19% Similarity=0.151 Sum_probs=38.2
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREE 630 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~ 630 (666)
.+|.+....+-..|++.|.-+..+|+.++...+.=+ ++|..+-||-..|-+-+.|+|-.+|.|-
T Consensus 53 q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~-------~kI~aL~kEI~~Lr~kL~e~r~~~~~~~ 116 (143)
T PRK11546 53 QKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDS-------SKINAVAKEMENLRQSLDELRVKRDIAM 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888899999999888888883333322 2233333333334444455555555543
No 356
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=44.22 E-value=3.3e+02 Score=31.63 Aligned_cols=32 Identities=13% Similarity=0.287 Sum_probs=19.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993 623 RDRREREEENLRKKIKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 623 r~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~ 654 (666)
..+=++|...--.+|.++...|+.|-+.+...
T Consensus 366 ~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~ 397 (582)
T PF09731_consen 366 KEKVEQERNGRLAKLAELNSRLKALEEALDAR 397 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666677777777776665555443
No 357
>PRK14154 heat shock protein GrpE; Provisional
Probab=43.65 E-value=1.5e+02 Score=30.86 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=31.7
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFA 620 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~ 620 (666)
..-|..|+++..+|++++++..++++.= +|-.+.+.+++.+ -++.+-+.---++|-|.
T Consensus 58 ~~el~~le~e~~elkd~~lRl~ADfeNy---RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLe 116 (208)
T PRK14154 58 EGQLTRMERKVDEYKTQYLRAQAEMDNL---RKRIEREKADIIKFGSKQLITDLLPVADSLI 116 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 3346667777777777777776665432 1222333333333 45555555555566553
No 358
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=43.58 E-value=1.9e+02 Score=31.29 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=8.7
Q ss_pred HHHHhhhcccccccccc
Q 005993 365 QKDYWNNNCHEIGYAPR 381 (666)
Q Consensus 365 ~~eYW~~~c~~iGy~~~ 381 (666)
+..||-+...+-+|.+.
T Consensus 42 lv~YWe~~~kk~~~~~~ 58 (264)
T PF07246_consen 42 LVYYWEEEMKKRRMMPG 58 (264)
T ss_pred HHHHHHHHHHHhccCCc
Confidence 35667544444455543
No 359
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=43.42 E-value=1.5e+02 Score=29.14 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=7.7
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 005993 593 SLEAQLKVMQQTIEELNK 610 (666)
Q Consensus 593 ~l~~~~~~~~~~~~~~~k 610 (666)
.|..||.++..+|+.+.+
T Consensus 31 ~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 31 NLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444444444433
No 360
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=43.27 E-value=2.7e+02 Score=25.67 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=31.8
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIE 606 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~ 606 (666)
.+.++-++..++.++|...+.+-.+=..+++.|..+++++.++.+
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~ 48 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQK 48 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 366778899999999988887765555666667666665555443
No 361
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=43.22 E-value=37 Score=36.31 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=16.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQ 585 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~ 585 (666)
+.+|++||.+||+++..+.+.++
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888776644443
No 362
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=43.13 E-value=2.8e+02 Score=33.36 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=31.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhh---------cHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCR---------SLEAQLKVMQQTIEELNKEQESLI 616 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~---------~l~~~~~~~~~~~~~~~keq~~li 616 (666)
++-|.++..+++.+|...|..|+.=+.+++ .+-.++.++++|+.+++.....|.
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~ 331 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEIS 331 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666778888888888888888754443322 233344455555555544443333
No 363
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=43.08 E-value=83 Score=33.60 Aligned_cols=44 Identities=11% Similarity=0.222 Sum_probs=31.4
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 005993 571 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQES 614 (666)
Q Consensus 571 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~ 614 (666)
.+.+||+..+...-+.=.+....||.++.+-+.+|+.+|+-+..
T Consensus 176 ~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~ 219 (259)
T PF08657_consen 176 PGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSD 219 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 36677776666555444466677888998888899999875444
No 364
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.00 E-value=90 Score=35.70 Aligned_cols=46 Identities=28% Similarity=0.460 Sum_probs=30.8
Q ss_pred hhhhhhHHHHHHHH--hHHhHHHHHHhhhcHHHHHHH----HHHHHHHHHHH
Q 005993 566 LKQENHELKKRLEK--KEGELQEERERCRSLEAQLKV----MQQTIEELNKE 611 (666)
Q Consensus 566 ~~~e~~~~~~~~~~--~~~~~~~e~~~~~~l~~~~~~----~~~~~~~~~ke 611 (666)
++.|.--|+++|.+ -+.+|..|++|.+.+++.|-+ +.++|+++.+.
T Consensus 119 ~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~k 170 (542)
T KOG0993|consen 119 LEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKK 170 (542)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHH
Confidence 34445556667776 667788888888888777744 45666666553
No 365
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=42.95 E-value=2.9e+02 Score=27.19 Aligned_cols=95 Identities=24% Similarity=0.391 Sum_probs=53.6
Q ss_pred hhhhhhhHHHHHHHHhHHhHHHHH--HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993 565 QLKQENHELKKRLEKKEGELQEER--ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 642 (666)
Q Consensus 565 ~~~~e~~~~~~~~~~~~~~~~~e~--~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~ 642 (666)
+|.++-.+|-+.+...+ +..|. |-..+++.++++--.-+--.-+..++.++++.+|-.|-..-...+.++++---+
T Consensus 5 el~~~~~~l~~~~e~~~--~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~ 82 (162)
T PF05565_consen 5 ELTDEYLELLELLEEGD--LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKE 82 (162)
T ss_pred HHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554332 11121 444456666666666666677788888888877777665555555555555555
Q ss_pred HHHHHHHHHhhhhhcCCCCc
Q 005993 643 TIQDLLDKIKLLEKMKTPSI 662 (666)
Q Consensus 643 ~i~~~~~~~~~~~~~~~~~~ 662 (666)
.+++.|+... ..+.++|.+
T Consensus 83 yL~~~m~~~g-~~ki~t~~~ 101 (162)
T PF05565_consen 83 YLLDAMEAAG-IKKIKTPLF 101 (162)
T ss_pred HHHHHHHHcC-CceeecCce
Confidence 5556555543 234555543
No 366
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.90 E-value=2.4e+02 Score=33.16 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=22.2
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEER 588 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~ 588 (666)
.|-++.+..+|.-++|||+-.+++...-+
T Consensus 196 ~t~~a~~e~~nrh~~erlk~~~~s~~e~l 224 (613)
T KOG0992|consen 196 TTTLAAVEEENRHLKERLKIVEESRLESL 224 (613)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34478888999999999998888754333
No 367
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=42.76 E-value=3.2e+02 Score=31.42 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=10.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 005993 593 SLEAQLKVMQQTIEELNKEQESL 615 (666)
Q Consensus 593 ~l~~~~~~~~~~~~~~~keq~~l 615 (666)
.|+.+++.-|++++|+.....+|
T Consensus 214 ~l~~~l~~~q~~l~eL~~~~~~L 236 (420)
T COG4942 214 QLNSELSADQKKLEELRANESRL 236 (420)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444444455555554443333
No 368
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.66 E-value=4e+02 Score=32.50 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=21.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005993 621 EERDRREREEENLRKKIKDASDTIQD 646 (666)
Q Consensus 621 eer~~~~~e~~~lr~kl~~~~~~i~~ 646 (666)
-|-.+.++|..+||+|++.+.++.|.
T Consensus 147 ~e~~~k~ae~~~lr~k~dss~s~~q~ 172 (716)
T KOG4593|consen 147 REKEDKLAELGTLRNKLDSSLSELQW 172 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788999999999999888864
No 369
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=42.64 E-value=56 Score=37.19 Aligned_cols=58 Identities=24% Similarity=0.359 Sum_probs=45.0
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHH---HhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 559 LGANLGQLKQENHELKKRLEKKEGELQEER---ERCRSLEAQLKVMQQTIEELNKEQESLI 616 (666)
Q Consensus 559 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~---~~~~~l~~~~~~~~~~~~~~~keq~~li 616 (666)
|..-+=++.+|...||+-+.+++..|.+-. --.+.|.++|++++++|+.++..+.+|-
T Consensus 411 l~~~lv~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls 471 (486)
T KOG2185|consen 411 LGAALVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEAALS 471 (486)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444466778888888888888888886654 4456789999999999999988777653
No 370
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.46 E-value=1.4e+02 Score=35.37 Aligned_cols=62 Identities=26% Similarity=0.266 Sum_probs=33.1
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHH-----------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEER-----------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRER 628 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~-----------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~ 628 (666)
+.-|.--++-..+--|+|++++|.|++.. +++.+-.++. -+. -+ -++.|+.++|-|+|-+.
T Consensus 256 e~riEtqkqtl~ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~-h~r------~~-~er~IerLkeqr~rder 327 (654)
T KOG4809|consen 256 EQRIETQKQTLDARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMA-HMR------MK-VERIIERLKEQRERDER 327 (654)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHH-hhh------ch-HHHHHHHhcchhhhhHH
Confidence 33344444555666678888888887655 2222211111 111 11 13778888887777665
Q ss_pred H
Q 005993 629 E 629 (666)
Q Consensus 629 e 629 (666)
|
T Consensus 328 E 328 (654)
T KOG4809|consen 328 E 328 (654)
T ss_pred H
Confidence 4
No 371
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=42.31 E-value=4.4e+02 Score=27.87 Aligned_cols=9 Identities=56% Similarity=0.733 Sum_probs=3.9
Q ss_pred HHHHhhhcH
Q 005993 586 EERERCRSL 594 (666)
Q Consensus 586 ~e~~~~~~l 594 (666)
+++++.+.|
T Consensus 118 ~~~~R~~~L 126 (327)
T TIGR02971 118 REVDRYRSL 126 (327)
T ss_pred HHHHHHHHH
Confidence 344444444
No 372
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=42.26 E-value=1e+02 Score=34.78 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005993 629 EEENLRKKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 629 e~~~lr~kl~~~~~~i~~~~~~~~~~~ 655 (666)
+-..|.++++++...+.+++..|=-+-
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~lPN~~ 110 (418)
T TIGR00414 84 ELTELSAALKALEAELQDKLLSIPNIP 110 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 445566666666666666666554333
No 373
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=41.87 E-value=1.4e+02 Score=28.82 Aligned_cols=14 Identities=36% Similarity=0.460 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 005993 631 ENLRKKIKDASDTI 644 (666)
Q Consensus 631 ~~lr~kl~~~~~~i 644 (666)
.+|-+|.++..+.|
T Consensus 92 k~llk~y~~~~~~L 105 (126)
T PF09403_consen 92 KELLKKYKDLLNKL 105 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 374
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=41.78 E-value=5.8e+02 Score=29.10 Aligned_cols=87 Identities=15% Similarity=0.303 Sum_probs=52.3
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--
Q 005993 561 ANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK-- 638 (666)
Q Consensus 561 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~-- 638 (666)
..+..+.+|..|+|+....++++++.=.+. +...++..-+.|+|-.--++.|=+..-+-.+.+--|-.||+.-|.
T Consensus 212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk~~---~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~ 288 (395)
T PF10267_consen 212 LGLQKILEELREIKESQSRLEESIEKLKEQ---YQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASM 288 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 348888899999999888888776432221 333444444555555555555656666666666666666665542
Q ss_pred ---------HHHHHHHHHHHH
Q 005993 639 ---------DASDTIQDLLDK 650 (666)
Q Consensus 639 ---------~~~~~i~~~~~~ 650 (666)
|=...|+|.+|.
T Consensus 289 EEK~~Yqs~eRaRdi~E~~Es 309 (395)
T PF10267_consen 289 EEKMAYQSYERARDIWEVMES 309 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 334456666653
No 375
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=41.54 E-value=29 Score=32.03 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 005993 631 ENLRKKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 631 ~~lr~kl~~~~~~i~~~~~~~~~~~ 655 (666)
..|++.|+++-..|..|-.+|..|.
T Consensus 54 ~~le~~l~e~~~~l~~lq~qL~~LK 78 (100)
T PF06428_consen 54 EQLEKQLKEKEALLESLQAQLKELK 78 (100)
T ss_dssp HHHHHCTTHHCHCCCHCTSSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778887777766655555554
No 376
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=41.38 E-value=3.8e+02 Score=26.80 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 005993 599 KVMQQTIEELNKEQ 612 (666)
Q Consensus 599 ~~~~~~~~~~~keq 612 (666)
++.+.+|.++.+|-
T Consensus 86 ~eye~~L~~Ar~EA 99 (181)
T PRK13454 86 KAYNKALADARAEA 99 (181)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444333333
No 377
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.17 E-value=3.1e+02 Score=26.59 Aligned_cols=51 Identities=25% Similarity=0.422 Sum_probs=36.0
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREE-ENLRKKIKD 639 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~-~~lr~kl~~ 639 (666)
+|-..|+.+++++++.++.+.+.=+.+-+..-+|..|..++. ..|+.-|+.
T Consensus 145 ~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~ 196 (218)
T cd07596 145 AKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKE 196 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677778888888888888777777777778888877653 445555543
No 378
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=40.94 E-value=89 Score=26.28 Aligned_cols=47 Identities=32% Similarity=0.604 Sum_probs=24.5
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhH--------------HHHHHhhhcHHHHHHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGEL--------------QEERERCRSLEAQLKVMQQTIEEL 608 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~--------------~~e~~~~~~l~~~~~~~~~~~~~~ 608 (666)
-++.|..+...+...+.+.+.-| ..|++|...++.+++.++.+|+.|
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555555555544443 455555555666666555555544
No 379
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=40.85 E-value=1.9e+02 Score=31.67 Aligned_cols=78 Identities=28% Similarity=0.383 Sum_probs=0.0
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhH-----------------------------HHHHHhhhcHHHHHHHHHHHHHHHH
Q 005993 559 LGANLGQLKQENHELKKRLEKKEGEL-----------------------------QEERERCRSLEAQLKVMQQTIEELN 609 (666)
Q Consensus 559 ~~~~~~~~~~e~~~~~~~~~~~~~~~-----------------------------~~e~~~~~~l~~~~~~~~~~~~~~~ 609 (666)
|+| |||..-|++| |-|+.+...||.+.++-.+.+||+.
T Consensus 285 iet-------------erlrqeeeelnikk~e~~kikqe~ddkdk~~ed~e~kkrqlerqekqeleqmaeeekkr~eeae 351 (445)
T KOG2891|consen 285 IET-------------ERLRQEEEELNIKKAEACKIKQEFDDKDKHLEDAEIKKRQLERQEKQELEQMAEEEKKREEEAE 351 (445)
T ss_pred hhH-------------HHHhhhHhhhhhhHHHhhchhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005993 610 KEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 610 keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~ 655 (666)
..|.+ |||.+.+.|+-.-..|-.+...-..-+.|++.+-|
T Consensus 352 erqra------eekeq~eaee~~ra~kr~egvkllkf~fekieare 391 (445)
T KOG2891|consen 352 ERQRA------EEKEQKEAEELERARKREEGVKLLKFEFEKIEARE 391 (445)
T ss_pred Hhhhh------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 380
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=40.64 E-value=2.5e+02 Score=33.34 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=36.2
Q ss_pred HhhhcHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005993 589 ERCRSLEAQLKVMQQTIEE-------LNKEQESLIDIFAEERDRR----EREEENLRKKIKDASDTIQDLLDKIKL 653 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~-------~~keq~~li~~f~eer~~~----~~e~~~lr~kl~~~~~~i~~~~~~~~~ 653 (666)
+....||+-+..++.+|++ ...|.+.|.+...+-++-- +.+.+.+..||++..+.++.+..++-+
T Consensus 539 eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~ 614 (653)
T PTZ00009 539 EAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQ 614 (653)
T ss_pred HHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556677777777776653 1223333333333332222 234566777777777777777776643
No 381
>PRK14151 heat shock protein GrpE; Provisional
Probab=40.55 E-value=1.5e+02 Score=29.97 Aligned_cols=92 Identities=15% Similarity=0.254 Sum_probs=51.5
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh---HHHHHHH
Q 005993 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDRR---EREEENL 633 (666)
Q Consensus 558 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~~~---~~e~~~l 633 (666)
++.+-|..|++|..+|++++.+..++++-= +|-.+.+.+++.+ -++.+-++---++|-|.--..-- +...+++
T Consensus 24 ~l~~~i~~le~e~~el~d~~lR~~Ae~eN~---rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~ 100 (176)
T PRK14151 24 DLTARVQELEEQLAAAKDQSLRAAADLQNV---RRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSADDEAIKPM 100 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHH
Confidence 345557778888888888887777766432 2333444444444 55555565555666664322211 1223556
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 005993 634 RKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 634 r~kl~~~~~~i~~~~~~~~ 652 (666)
.+-++-..+.+..+|++..
T Consensus 101 ~~Gv~mi~k~l~~~L~k~G 119 (176)
T PRK14151 101 REGVELTLKMFQDTLKRYQ 119 (176)
T ss_pred HHHHHHHHHHHHHHHHHCC
Confidence 6666666666666665543
No 382
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=40.50 E-value=29 Score=42.58 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcc
Q 005993 25 WSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 69 (666)
Q Consensus 25 ~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGf 69 (666)
.+.-.+.|.|+|.||+++++.+...--+..........+-.|.||
T Consensus 591 ~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL 635 (924)
T PRK10841 591 GDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 635 (924)
T ss_pred CCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhH
No 383
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=40.50 E-value=3e+02 Score=31.38 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 005993 604 TIEELNKEQESLI 616 (666)
Q Consensus 604 ~~~~~~keq~~li 616 (666)
+|+++.+|-..+|
T Consensus 61 ~L~~Ak~ea~~Ii 73 (445)
T PRK13428 61 AVEDAKAEAARVV 73 (445)
T ss_pred HHHHHHHHHHHHH
Confidence 3555555444443
No 384
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.28 E-value=3.3e+02 Score=33.66 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=9.0
Q ss_pred ceEEEEECCCCCCHHHHHHHH
Q 005993 28 HCICFADNGGGMNPDKMRHCM 48 (666)
Q Consensus 28 ~~L~I~DDG~GMd~~el~~~m 48 (666)
-.+.+-+||.| -..+..||
T Consensus 27 i~lI~G~nGsG--KSSIldAI 45 (908)
T COG0419 27 IFLIVGPNGAG--KSSILDAI 45 (908)
T ss_pred eEEEECCCCCc--HHHHHHHH
Confidence 34445555555 23444444
No 385
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=40.22 E-value=9.4 Score=46.61 Aligned_cols=83 Identities=31% Similarity=0.441 Sum_probs=0.0
Q ss_pred CccCccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHh-------hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 552 HFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERER-------CRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624 (666)
Q Consensus 552 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~-------~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~ 624 (666)
.-+++. -....+|.....+|.-||.-++++|..|+.- .+-|..+|+++...|++..-.-.+. .|-+.
T Consensus 25 ~~~e~e--~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq----~E~~k 98 (859)
T PF01576_consen 25 SKLEDE--QALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQ----IELNK 98 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhh----HHHHH
Confidence 335554 3346778888899999999999999888832 3456666677766666655543333 34578
Q ss_pred hhHHHHHHHHHHHHHH
Q 005993 625 RREREEENLRKKIKDA 640 (666)
Q Consensus 625 ~~~~e~~~lr~kl~~~ 640 (666)
+|+.|-..||+.|+++
T Consensus 99 krE~El~~Lrr~LEe~ 114 (859)
T PF01576_consen 99 KREAELAKLRRDLEEA 114 (859)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888888754
No 386
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=39.95 E-value=3.8e+02 Score=26.37 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=31.9
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 573 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 622 (666)
Q Consensus 573 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ee 622 (666)
|.+|=.+.+.+++.=.+.+...++.+.+++++|+++.+|-..+++---+|
T Consensus 45 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~e 94 (173)
T PRK13460 45 LDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSD 94 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544446666667777888888888888777766654444
No 387
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.95 E-value=2.8e+02 Score=33.79 Aligned_cols=86 Identities=29% Similarity=0.347 Sum_probs=55.6
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHH-----HhhhcHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993 559 LGANLGQLKQENHELKKRLEKKEGELQEER-----ERCRSLEAQL-------KVMQQTIEELNKEQESLIDIFAEERDRR 626 (666)
Q Consensus 559 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~-----~~~~~l~~~~-------~~~~~~~~~~~keq~~li~~f~eer~~~ 626 (666)
|.-..+||.+|+.++.+++...++-...+. +..=++-.|+ .+-.|.++++.+++..+++..+-=|+++
T Consensus 195 ~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~ 274 (716)
T KOG4593|consen 195 LDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENR 274 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344578888888888888877766543322 1111111122 2333467778888888888888777777
Q ss_pred H------HHHHHHHHHHHHHHHHH
Q 005993 627 E------REEENLRKKIKDASDTI 644 (666)
Q Consensus 627 ~------~e~~~lr~kl~~~~~~i 644 (666)
+ .|.|.|+.||..+-.-+
T Consensus 275 ~tv~~LqeE~e~Lqskl~~~~~l~ 298 (716)
T KOG4593|consen 275 ETVGLLQEELEGLQSKLGRLEKLQ 298 (716)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5 57788888888765544
No 388
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=39.92 E-value=98 Score=34.40 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=0.4
Q ss_pred hhhhhhhhhHHH
Q 005993 563 LGQLKQENHELK 574 (666)
Q Consensus 563 ~~~~~~e~~~~~ 574 (666)
++.|++|...+|
T Consensus 107 ~~elkkEie~IK 118 (370)
T PF02994_consen 107 IKELKKEIENIK 118 (370)
T ss_dssp -----------H
T ss_pred HHHHHHHHHHHh
Confidence 444444444444
No 389
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=39.87 E-value=4.1e+02 Score=28.36 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 005993 352 TVLARLEARLIQMQKDYWNNNC 373 (666)
Q Consensus 352 ~ly~rLe~rL~q~~~eYW~~~c 373 (666)
.....|...|.....+||..|.
T Consensus 96 ~~~~~L~~~i~~~~~~~~~~N~ 117 (297)
T PF02841_consen 96 KYQKKLMEQIEKKFEEFCKQNE 117 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788778888876443
No 390
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=39.46 E-value=4.4e+02 Score=30.96 Aligned_cols=50 Identities=32% Similarity=0.440 Sum_probs=24.8
Q ss_pred HHHHHHhhhcHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005993 584 LQEERERCRSLEAQLKVMQ-------QTIEELNKEQESLIDIFAEERDRREREEENL 633 (666)
Q Consensus 584 ~~~e~~~~~~l~~~~~~~~-------~~~~~~~keq~~li~~f~eer~~~~~e~~~l 633 (666)
+.+|++-+.+||.||.+-+ +++..-.|.-.-|-+.+--|-.||+|+|..|
T Consensus 537 ~lrerelreslekql~~ErklR~~~qkr~kkEkk~k~k~qe~L~~~sk~reqaeqs~ 593 (641)
T KOG3915|consen 537 FLRERELRESLEKQLAMERKLRAIVQKRLKKEKKAKRKLQEALEFESKRREQAEQSL 593 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhcc
Confidence 4566677777777774422 2222222222333333444446666666654
No 391
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=39.41 E-value=39 Score=41.62 Aligned_cols=61 Identities=15% Similarity=0.079 Sum_probs=38.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcc---cccccccCCeEEEEeeec
Q 005993 26 SFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF---KTSTMRLGADVIVFSCCC 87 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGf---KTgSMRLGkdviVfSK~~ 87 (666)
+.-.|.|.|+|.||+++.+.+...--++.+.. ...-+--|.|| |.-.-.+|-.+.|-|...
T Consensus 598 ~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~-~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g 661 (894)
T PRK10618 598 DRLTIRILDTGAGVSIKELDNLHFPFLNQTQG-DRYGKASGLTFFLCNQLCRKLGGHLTIKSREG 661 (894)
T ss_pred cEEEEEEEECCCCCCHHHHHHhcCccccCCCC-CCCCCCcChhHHHHHHHHHHcCCEEEEEECCC
Confidence 44679999999999999998886322232211 11123457776 333345788888887753
No 392
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.31 E-value=4.2e+02 Score=31.61 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=15.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 621 EERDRREREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 621 eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
-++++-++|.-++.-+..+--..|+.++-+++
T Consensus 353 ~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~ 384 (581)
T KOG0995|consen 353 SELDRLSKEVWELKLEIEDFFKELEKKFIDLN 384 (581)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555444444444444444433
No 393
>PRK10490 sensor protein KdpD; Provisional
Probab=38.80 E-value=22 Score=43.44 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=39.1
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccc---ccccccCCeEEEEeee
Q 005993 25 WSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCC 86 (666)
Q Consensus 25 ~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfK---TgSMRLGkdviVfSK~ 86 (666)
.+.-.|.|.|||.||+++.+.++..-.++.+. ....+-.|.||- .-.-.+|-++.|-+..
T Consensus 808 ~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~--~~~~~G~GLGL~Ivk~ive~hGG~I~v~s~~ 870 (895)
T PRK10490 808 GERLQLDVWDNGPGIPPGQEQLIFDKFARGNK--ESAIPGVGLGLAICRAIVEVHGGTIWAENRP 870 (895)
T ss_pred CCEEEEEEEECCCCCCHHHHHHhcCCCccCCC--CCCCCCccHHHHHHHHHHHHcCCEEEEEECC
Confidence 45568999999999999999888754343221 122334677774 2233467777777764
No 394
>PRK14139 heat shock protein GrpE; Provisional
Probab=38.80 E-value=3.2e+02 Score=27.97 Aligned_cols=88 Identities=15% Similarity=0.233 Sum_probs=41.6
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDRREREEENLRKKIK 638 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~ 638 (666)
.+-|..|++|..+|++++.+...+++-= +|-++.+.+++.+ -++.+-++---++|-|---..--+...+++..-++
T Consensus 38 ~~~l~~le~e~~elkd~~lR~~AefeN~---rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~~~~~l~~Gv~ 114 (185)
T PRK14139 38 EAELAEAEAKAAELQDSFLRAKAETENV---RRRAQEDVAKAHKFAIESFAESLLPVKDSLEAALADESGDLEKLREGVE 114 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccchHHHHHHHHH
Confidence 3346777888888888888777775322 1222333333333 34444444444444442111111122344444444
Q ss_pred HHHHHHHHHHHH
Q 005993 639 DASDTIQDLLDK 650 (666)
Q Consensus 639 ~~~~~i~~~~~~ 650 (666)
--.+.+..+|++
T Consensus 115 mi~k~l~~vL~k 126 (185)
T PRK14139 115 LTLKQLTSAFEK 126 (185)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 395
>PRK14155 heat shock protein GrpE; Provisional
Probab=38.79 E-value=1.8e+02 Score=30.14 Aligned_cols=12 Identities=8% Similarity=0.252 Sum_probs=4.7
Q ss_pred hHHHHHHHHhHH
Q 005993 571 HELKKRLEKKEG 582 (666)
Q Consensus 571 ~~~~~~~~~~~~ 582 (666)
.+|.++|.++++
T Consensus 16 ~~l~~~l~~le~ 27 (208)
T PRK14155 16 DDAAQEIEALKA 27 (208)
T ss_pred cchHHHHHHHHH
Confidence 334444433333
No 396
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=38.70 E-value=19 Score=34.80 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=35.4
Q ss_pred cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccccccCCeEEEE
Q 005993 17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVF 83 (666)
Q Consensus 17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgSMRLGkdviVf 83 (666)
+.|.+....+...+.|.|+|.|+++..+....... ...........-|.||--.. +|..++-+.
T Consensus 67 I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~~~--~~~~~~~~~~~~G~GL~Li~-~L~D~v~~~ 130 (159)
T TIGR01924 67 IGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLGPY--DGSEPIDDLREGGLGLFLIE-TLMDEVEVY 130 (159)
T ss_pred EEEEEEEeCCEEEEEEEEcccccCchhhccccCCC--CCCCCcccCCCCccCHHHHH-HhccEEEEE
Confidence 34444334567788999999999998766543221 11111122223477776443 555555554
No 397
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=38.69 E-value=3.4e+02 Score=31.61 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=13.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCMSLG 51 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~msfG 51 (666)
....+.+-.||.|-+ -+..|+.|.
T Consensus 22 ~g~~vitG~nGaGKS--~ll~al~~~ 45 (563)
T TIGR00634 22 RGLTVLTGETGAGKS--MIIDALSLL 45 (563)
T ss_pred CCeEEEECCCCCCHH--HHHHHHHHH
Confidence 445566666666653 355555443
No 398
>PF13166 AAA_13: AAA domain
Probab=38.68 E-value=4e+02 Score=31.47 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=16.4
Q ss_pred CcceEEEEECCCCCC-HHHHHHHHhcC
Q 005993 26 SFHCICFADNGGGMN-PDKMRHCMSLG 51 (666)
Q Consensus 26 G~~~L~I~DDG~GMd-~~el~~~msfG 51 (666)
+..-|..-+||.|=+ ...+.+.+..|
T Consensus 16 ~~~n~IYG~NGsGKStlsr~l~~~~~~ 42 (712)
T PF13166_consen 16 KKINLIYGRNGSGKSTLSRILKSLCRG 42 (712)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 555788899999954 33444444433
No 399
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=38.63 E-value=1.2e+02 Score=30.82 Aligned_cols=35 Identities=31% Similarity=0.342 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHH
Q 005993 594 LEAQLKVMQQTIEEL-NKEQESLIDIFAEERDRRER 628 (666)
Q Consensus 594 l~~~~~~~~~~~~~~-~keq~~li~~f~eer~~~~~ 628 (666)
+.+.++++..+..++ .-+++++-+++-|||.|.--
T Consensus 143 ~~~~~~~v~~~~~ele~~~~~~~r~al~EERrRyc~ 178 (219)
T PF08397_consen 143 LKEALQDVTERQSELEEFEKQSLREALLEERRRYCF 178 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433333 24778899999999999864
No 400
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=38.49 E-value=21 Score=39.96 Aligned_cols=43 Identities=26% Similarity=0.354 Sum_probs=34.2
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccccccC
Q 005993 25 WSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLG 77 (666)
Q Consensus 25 ~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgSMRLG 77 (666)
.+.-.+.|.|||.||++.......+-|..+ -|.|+.+.--||+
T Consensus 384 ~~~i~i~i~Dng~g~~~~~~~~~~~~~~~r----------~giGL~Nv~~rl~ 426 (456)
T COG2972 384 DDVIQISISDNGPGIDEEKLEGLSTKGENR----------SGIGLSNVKERLK 426 (456)
T ss_pred CCEEEEEEeeCCCCCChhHHHHHHhhccCc----------ccccHHHHHHHHH
Confidence 456789999999999999988877655433 4889988888776
No 401
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=38.28 E-value=2.9e+02 Score=33.13 Aligned_cols=8 Identities=13% Similarity=0.476 Sum_probs=4.2
Q ss_pred eEEEeccc
Q 005993 331 IGVLEANF 338 (666)
Q Consensus 331 IGVvEanf 338 (666)
..||++.|
T Consensus 154 s~ii~Is~ 161 (754)
T TIGR01005 154 TRIIAIEF 161 (754)
T ss_pred cEEEEEEE
Confidence 45555554
No 402
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=38.26 E-value=1.6e+02 Score=26.53 Aligned_cols=65 Identities=23% Similarity=0.425 Sum_probs=29.9
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~ 654 (666)
+....|-.+...+++++++++.++-.+=.-++.-.... .+.+.|....++....|.+|-+++..+
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555555555544444444333222 233444444444455555554444443
No 403
>PF15265 FAM196: FAM196 family
Probab=38.26 E-value=2.3e+02 Score=33.29 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=28.1
Q ss_pred hhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH
Q 005993 568 QENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ 603 (666)
Q Consensus 568 ~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~ 603 (666)
-|...||-||+.||+.|+.--|+.|-|--=+||+++
T Consensus 388 ~E~~dLqaqLQsmEe~L~SnQEtIKVLLnVIQDLEK 423 (514)
T PF15265_consen 388 GELCDLQAQLQSMEESLSSNQETIKVLLNVIQDLEK 423 (514)
T ss_pred cchHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 467889999999999998888888877654444443
No 404
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=38.24 E-value=8.3e+02 Score=29.86 Aligned_cols=39 Identities=31% Similarity=0.402 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 614 SLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 614 ~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
+|=.-++|||.+|-+||+.-.+.+-.|..+.+|--|.++
T Consensus 506 ~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r 544 (697)
T PF09726_consen 506 SLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCR 544 (697)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHH
Confidence 334457777777777777666555555555556555443
No 405
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=38.20 E-value=66 Score=38.24 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=30.5
Q ss_pred hhhhhHHHHHHHHhHHhH-------HHHHHh----hhcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 005993 567 KQENHELKKRLEKKEGEL-------QEERER----CRSLEAQLKVM-QQTIEELNKEQESLIDIFAEE 622 (666)
Q Consensus 567 ~~e~~~~~~~~~~~~~~~-------~~e~~~----~~~l~~~~~~~-~~~~~~~~keq~~li~~f~ee 622 (666)
++.+-+++||++++++++ |+|+|+ ||.|. +|--. -.+--.+.|--.||||.+||-
T Consensus 225 ~K~~vs~~e~i~~LQeE~l~tQ~kYQreLErlEKENkeLr-~lll~kd~k~i~~kklKkSLIDMYSEV 291 (980)
T KOG0447|consen 225 QKRKVSDKEKIDQLQEELLHTQLKYQRILERLEKENKELR-KLVLQKDDKGIHHRKLKKSLIDMYSEV 291 (980)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHhhccchhhHHHHHHHHHHHHHHHH
Confidence 355677888888888875 556543 23333 22110 112234556666777777764
No 406
>PLN02939 transferase, transferring glycosyl groups
Probab=38.14 E-value=2.7e+02 Score=35.24 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=18.2
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHhH
Q 005993 561 ANLGQLKQENHELKKRLEKKEGEL 584 (666)
Q Consensus 561 ~~~~~~~~e~~~~~~~~~~~~~~~ 584 (666)
.-+.-||+||-.||+-++-+...|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~ 249 (977)
T PLN02939 226 KELDVLKEENMLLKDDIQFLKAEL 249 (977)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 337789999999998887665553
No 407
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=37.90 E-value=1.3e+02 Score=34.01 Aligned_cols=28 Identities=18% Similarity=0.400 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005993 611 EQESLIDIFAEERDRREREEENLRKKIK 638 (666)
Q Consensus 611 eq~~li~~f~eer~~~~~e~~~lr~kl~ 638 (666)
++...+..+.+.+..-.++.+.|..+|+
T Consensus 372 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 399 (451)
T PF03961_consen 372 EKKEQLKKLKEKKKELKEELKELKEELK 399 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554555555555544
No 408
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=37.59 E-value=3.2e+02 Score=28.71 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=22.5
Q ss_pred hhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHH
Q 005993 564 GQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIE 606 (666)
Q Consensus 564 ~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~ 606 (666)
+.|.+...+.+.-|.+....+-+=+..-|.|+.++.+++...+
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~ 69 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAE 69 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666665655555544444444555555544444433
No 409
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=37.57 E-value=2.6e+02 Score=31.42 Aligned_cols=18 Identities=11% Similarity=0.270 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005993 604 TIEELNKEQESLIDIFAE 621 (666)
Q Consensus 604 ~~~~~~keq~~li~~f~e 621 (666)
+++++..+-+.|.+++.+
T Consensus 54 ~~~~~~~~~~~~~el~~~ 71 (360)
T TIGR00019 54 EYQQAQEDIKEAKEILEE 71 (360)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 455556666666666643
No 410
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.51 E-value=2.9e+02 Score=30.46 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=10.8
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHH
Q 005993 573 LKKRLEKKEGELQEERERCRSLE 595 (666)
Q Consensus 573 ~~~~~~~~~~~~~~e~~~~~~l~ 595 (666)
.+++|.+-|++=+.+..+|+...
T Consensus 118 te~~l~~y~~~n~~~I~~n~~~~ 140 (309)
T TIGR00570 118 TKKKIETYQKENKDVIQKNKEKS 140 (309)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555555555444444444333
No 411
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=37.50 E-value=1.8e+02 Score=30.08 Aligned_cols=33 Identities=9% Similarity=0.158 Sum_probs=20.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993 622 ERDRREREEENLRKKIKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 622 er~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~ 654 (666)
+.+....+-++++.+|+.|...++.+..+++.+
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 135 (322)
T TIGR01730 103 DLDDAKAAVEAAQADLEAAKASLASAQLNLRYT 135 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 344445556666677777777776666665543
No 412
>PRK14147 heat shock protein GrpE; Provisional
Probab=37.37 E-value=2.1e+02 Score=28.79 Aligned_cols=59 Identities=19% Similarity=0.295 Sum_probs=34.5
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 005993 558 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIF 619 (666)
Q Consensus 558 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f 619 (666)
.+.+-|..|++|..+|++++.+..++++.=+ |-.+.+.+++.+ -++.+-++---++|-|
T Consensus 22 ~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~r---kR~~kE~e~~~~~a~~~~~~~lLpv~Dnl 81 (172)
T PRK14147 22 PLKAEVESLRSEIALVKADALRERADLENQR---KRIARDVEQARKFANEKLLGELLPVFDSL 81 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3555678888888888888887777664332 223334444433 4444444444455555
No 413
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.27 E-value=93 Score=27.95 Aligned_cols=45 Identities=29% Similarity=0.416 Sum_probs=19.1
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHH--HhhhcHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEER--ERCRSLEAQLKVMQQTIEE 607 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~--~~~~~l~~~~~~~~~~~~~ 607 (666)
+..|+.++..|...+..+.|+=...+ +-...||.+|+.+-.++-.
T Consensus 21 ~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~ 67 (100)
T PF01486_consen 21 IAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRS 67 (100)
T ss_pred HHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHH
Confidence 44444444444444444443311111 3334455555555444443
No 414
>PRK14151 heat shock protein GrpE; Provisional
Probab=37.25 E-value=4.1e+02 Score=26.86 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=23.6
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005993 590 RCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK 635 (666)
Q Consensus 590 ~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~ 635 (666)
.-..|+++++++++++++++...-.+.-=|---|.|-.+|.+.+++
T Consensus 21 ~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~ 66 (176)
T PRK14151 21 AGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHK 66 (176)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555444334444455556666666665554
No 415
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=37.14 E-value=1.9e+02 Score=27.83 Aligned_cols=83 Identities=19% Similarity=0.297 Sum_probs=37.9
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK-DA 640 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~-~~ 640 (666)
.|+.|++.+-+|+|=-.-... ....-.....+..+++.++++++++......|-+.-++ =++ .++.+++++|- +-
T Consensus 48 ~I~~lr~~G~sL~eI~~~l~~-~~~~~~~~~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~-l~~--~~~~~~~~~~~~~~ 123 (134)
T cd04779 48 LIEHLKGQRLSLAEIKDQLEE-VQRSDKEQREVAQEVQLVCDQIDGLEHRLKQLKPIASQ-TDR--AQRMKMTKELSQQV 123 (134)
T ss_pred HHHHHHHCCCCHHHHHHHHHh-hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHhcCHHh
Confidence 477788777666542111111 00000112234445555555555554444433333222 222 34455666554 56
Q ss_pred HHHHHHHH
Q 005993 641 SDTIQDLL 648 (666)
Q Consensus 641 ~~~i~~~~ 648 (666)
.-+||-|.
T Consensus 124 ~~~~~~~~ 131 (134)
T cd04779 124 LTLIQSLT 131 (134)
T ss_pred HHHHHHHH
Confidence 66777664
No 416
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=37.03 E-value=2.1e+02 Score=24.88 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005993 600 VMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDL 647 (666)
Q Consensus 600 ~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~ 647 (666)
++-+|=..+=|++-.-+ +.=++.-..|-+.+..|+++|-..|..|
T Consensus 20 ealrQ~N~~Mker~e~l---~~wqe~~~~e~~~~~~kf~Ear~lv~~L 64 (68)
T PF11577_consen 20 EALRQNNQAMKERFEEL---LAWQEKQKEEREFLERKFQEARELVERL 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444443333 3334445566677777777776555443
No 417
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.95 E-value=4.8e+02 Score=31.18 Aligned_cols=99 Identities=25% Similarity=0.409 Sum_probs=55.8
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhH----------HHHH-----------HhhhcHHHHHHHHHHHHHHHH----HHHH
Q 005993 559 LGANLGQLKQENHELKKRLEKKEGEL----------QEER-----------ERCRSLEAQLKVMQQTIEELN----KEQE 613 (666)
Q Consensus 559 ~~~~~~~~~~e~~~~~~~~~~~~~~~----------~~e~-----------~~~~~l~~~~~~~~~~~~~~~----keq~ 613 (666)
++. |.+.+.||..|||.+.-+++++ +.+. -+.|+|++-|+.-..++-.|+ |.-+
T Consensus 330 ~Ee-Ie~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~ 408 (654)
T KOG4809|consen 330 LEE-IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHN 408 (654)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 8899999999999988777664 1111 233444444432221221111 1222
Q ss_pred HHHHH-----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 005993 614 SLIDI-----FAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMK 658 (666)
Q Consensus 614 ~li~~-----f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~~ 658 (666)
.+-|+ |++-|.--+.|---.|+-++-|-...+.||+-++..+..|
T Consensus 409 ~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneK 458 (654)
T KOG4809|consen 409 IEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEK 458 (654)
T ss_pred hhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22222 5555555555656666667777777788887776665444
No 418
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=36.88 E-value=87 Score=33.01 Aligned_cols=53 Identities=26% Similarity=0.354 Sum_probs=39.9
Q ss_pred ccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 005993 556 DCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL 608 (666)
Q Consensus 556 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~ 608 (666)
++.+.++|..+.+|...+.+.|...+..+++|.+.+.+|.+-.+-++.+.+.+
T Consensus 17 ~~~~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l 69 (243)
T PF07160_consen 17 DPNLKDTLSKIDQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQKKL 69 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567789999999999999999999999888876666665555555544444
No 419
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=36.88 E-value=2.9e+02 Score=33.66 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhhc-CCCCcc
Q 005993 613 ESLIDIFAEERDRREREEENLRKKIKD------ASDTIQDLLDKIKLLEKM-KTPSIR 663 (666)
Q Consensus 613 ~~li~~f~eer~~~~~e~~~lr~kl~~------~~~~i~~~~~~~~~~~~~-~~~~~~ 663 (666)
+.=+++|..-|.|-+.|-+-|++||+. +.+.++.|.|.|+.-..+ |-|+|.
T Consensus 593 ~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~~LkCs~Cn 650 (698)
T KOG0978|consen 593 ELELEIEKFKRKRLEEELERLKRKLERLKKEESGASADEVLAEELKEYKELLKCSVCN 650 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHhceeCCCcc
Confidence 344778888888888899999999984 235688888888755433 445554
No 420
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=36.84 E-value=2.3e+02 Score=32.97 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=11.9
Q ss_pred HhhhcHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIE 606 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~ 606 (666)
+....||+-+..++..|+
T Consensus 525 e~kn~lEs~iy~~r~~l~ 542 (595)
T TIGR02350 525 EARNNADSLAYQAEKTLK 542 (595)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555567777777777664
No 421
>PRK14147 heat shock protein GrpE; Provisional
Probab=36.83 E-value=4.3e+02 Score=26.60 Aligned_cols=11 Identities=18% Similarity=0.175 Sum_probs=4.4
Q ss_pred cHHHHHHHHHH
Q 005993 593 SLEAQLKVMQQ 603 (666)
Q Consensus 593 ~l~~~~~~~~~ 603 (666)
.+.+.+++.++
T Consensus 43 R~~Ad~eN~rk 53 (172)
T PRK14147 43 RERADLENQRK 53 (172)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 422
>PRK14162 heat shock protein GrpE; Provisional
Probab=36.83 E-value=2.3e+02 Score=29.11 Aligned_cols=89 Identities=15% Similarity=0.253 Sum_probs=45.0
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDR--REREEENLRKK 636 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~~--~~~e~~~lr~k 636 (666)
..-|..|++++.+|++++.+..++++-=+ |-.+.+.+++.+ -++.+-++---++|-|.--..- -+...++|.+=
T Consensus 45 ~~~l~~l~~e~~elkd~~lR~~AEfeN~r---kR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~l~~G 121 (194)
T PRK14162 45 EKEIADLKAKNKDLEDKYLRSQAEIQNMQ---NRYAKERAQLIKYESQSLAKDVLPAMDNLERALAVKADDEAAKQLKKG 121 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccchhHHHHHHH
Confidence 34466677777777777777766654322 223333344433 5555556555666666322211 11222445555
Q ss_pred HHHHHHHHHHHHHHH
Q 005993 637 IKDASDTIQDLLDKI 651 (666)
Q Consensus 637 l~~~~~~i~~~~~~~ 651 (666)
++--.+.+..+|++.
T Consensus 122 vemi~k~l~~vL~~~ 136 (194)
T PRK14162 122 VQMTLDHLVKALKDH 136 (194)
T ss_pred HHHHHHHHHHHHHHC
Confidence 554444555555443
No 423
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=36.73 E-value=2.4e+02 Score=33.65 Aligned_cols=64 Identities=9% Similarity=0.231 Sum_probs=32.7
Q ss_pred HhhhcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 589 ERCRSLEAQLKVMQQTIEEL-----NKEQESLIDIFAEERDRRE-REEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~-----~keq~~li~~f~eer~~~~-~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
+....||+-+..++++|+++ ..+.+.+.+...+-++--+ ...+.+++|+++..+.++.|..++.
T Consensus 568 eakN~lEs~iy~~r~~l~e~~~~~s~~ere~i~~~l~~~~~WL~~~d~~~i~~k~~eL~~~l~~l~~k~y 637 (663)
T PTZ00400 568 DAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSEDVDSIKDKTKQLQEASWKISQQAY 637 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556777777777777531 2222233222222222111 1235566777776666777776653
No 424
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=36.69 E-value=17 Score=40.96 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=24.6
Q ss_pred cccchhcccCCCCCCCc-ceEEEEECCCCCCHH
Q 005993 11 NSKMLQLCSNLPSLWSF-HCICFADNGGGMNPD 42 (666)
Q Consensus 11 ~a~a~n~~i~~~~~~G~-~~L~I~DDG~GMd~~ 42 (666)
-|||..++|.+- .++. -+|.|.|||.|+++.
T Consensus 425 HA~AS~V~i~l~-~~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 425 HADASAVTIQLW-QQDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred ccccceEEEEEe-eCCcEEEEEEecCCcCCCCC
Confidence 478888888872 3455 799999999999864
No 425
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=36.65 E-value=4.5e+02 Score=26.29 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHH--HHHHHHHhh
Q 005993 577 LEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE-RDRREREEENLRKKIKDASDTI--QDLLDKIKL 653 (666)
Q Consensus 577 ~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ee-r~~~~~e~~~lr~kl~~~~~~i--~~~~~~~~~ 653 (666)
|..++..+...++.-..+.++.+++++..|+.-++...=.+-...| |++-..|-+.-|++++.-...+ |+.-+-...
T Consensus 39 Le~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~~ 118 (155)
T PRK06569 39 FNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLA 118 (155)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhcCC
Q 005993 654 LEKMKT 659 (666)
Q Consensus 654 ~~~~~~ 659 (666)
.+.+|+
T Consensus 119 ~~~~~~ 124 (155)
T PRK06569 119 AKQFRT 124 (155)
T ss_pred HHHHHH
No 426
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=36.57 E-value=2.1e+02 Score=35.05 Aligned_cols=33 Identities=39% Similarity=0.485 Sum_probs=26.5
Q ss_pred CCccCccccchhhhhhhhhhhHHHHHHHHhHHhHH
Q 005993 551 EHFLSDCSLGANLGQLKQENHELKKRLEKKEGELQ 585 (666)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 585 (666)
++.|..+ .+.+-|+++.|.+|.|||.-.|+.|+
T Consensus 97 E~~Lank--da~lrq~eekn~slqerLelaE~~l~ 129 (916)
T KOG0249|consen 97 ENELANK--DADLRQNEEKNRSLQERLELAEPKLQ 129 (916)
T ss_pred HHHHhCc--chhhchhHHhhhhhhHHHHHhhHhhH
Confidence 3556666 67789999999999999988888753
No 427
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=36.53 E-value=2.6e+02 Score=31.50 Aligned_cols=60 Identities=17% Similarity=0.276 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 593 SLEAQLKVMQQTIEELNK---------EQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 593 ~l~~~~~~~~~~~~~~~k---------eq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
.|+.++.+++.++.++.. -+..+..++++.+..-.++-..++..|..|...+..+-+++.
T Consensus 247 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 247 QLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555421 134455555666655666666666666666666655555544
No 428
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=36.29 E-value=36 Score=42.17 Aligned_cols=57 Identities=12% Similarity=0.153 Sum_probs=37.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccccc---ccccCCeEEEEeee
Q 005993 28 HCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS---TMRLGADVIVFSCC 86 (666)
Q Consensus 28 ~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTg---SMRLGkdviVfSK~ 86 (666)
-.|.|.|||.||+++++.++..-.++.+. ...-+..|.||-.+ .-.+|-.+.|-|..
T Consensus 865 ~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~ 924 (1197)
T PRK09959 865 IKMTIMDSGSGLSQEEQQQLFKRYSQTSA--GRQQTGSGLGLMICKELIKNMQGDLSLESHP 924 (1197)
T ss_pred EEEEEEEcCCCCCHHHHHHhhcccccccc--CCCCCCcCchHHHHHHHHHHcCCEEEEEeCC
Confidence 35789999999999999888754333321 12234578888532 23467777777764
No 429
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=36.29 E-value=3.7e+02 Score=25.30 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=22.2
Q ss_pred HHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 574 KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 617 (666)
Q Consensus 574 ~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~ 617 (666)
.+|=.+..++|..=.+.....+..+++++++|+++.+|-..+++
T Consensus 25 ~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~ 68 (147)
T TIGR01144 25 ETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIE 68 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333344444555556666666666665555543
No 430
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=36.29 E-value=13 Score=34.08 Aligned_cols=44 Identities=39% Similarity=0.511 Sum_probs=18.8
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHH
Q 005993 561 ANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQT 604 (666)
Q Consensus 561 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~ 604 (666)
.-+..|.+||.+|+.++..++..+..-.+....|...|..||+.
T Consensus 32 ~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~ 75 (131)
T PF05103_consen 32 EELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQET 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCT---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhh
Confidence 34677889999999999888887755445555555555445443
No 431
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=36.13 E-value=3.9e+02 Score=25.49 Aligned_cols=69 Identities=17% Similarity=0.309 Sum_probs=37.0
Q ss_pred hhhhhhhHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005993 565 QLKQENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENL 633 (666)
Q Consensus 565 ~~~~e~~~~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~l 633 (666)
+.++++.+.+|-|......+..+. .....|+++++++++++..+.....+|-.-+..+...-..|.+.+
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~ 117 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEEL 117 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666665555444444444 445556666666666666555555555444444444444444433
No 432
>PF15463 ECM11: Extracellular mutant protein 11
Probab=36.10 E-value=1.9e+02 Score=27.75 Aligned_cols=58 Identities=12% Similarity=0.223 Sum_probs=42.4
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005993 590 RCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDL 647 (666)
Q Consensus 590 ~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~ 647 (666)
.--.|..|..++-++|-++..+-.-.+.+|..|-++|....+.-.+.|.+..+.|+.+
T Consensus 77 ~Gd~~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav~~~~~~l~~kL~~mk~~ 134 (139)
T PF15463_consen 77 AGDWFLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEAVRAQGEQLDRKLEKMKEG 134 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345677778888888888888899999999999999876655555555555555444
No 433
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=36.08 E-value=2.5e+02 Score=30.71 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=19.5
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~ 624 (666)
|++-.|++.+-.+++++++..++-+.+...|..=|.
T Consensus 119 d~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~ 154 (302)
T PF09738_consen 119 DKLEELEETLAQLQREYREKIRELERQKRAHDSLRE 154 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555566665555555555544444433
No 434
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=35.88 E-value=1.3e+02 Score=32.86 Aligned_cols=13 Identities=15% Similarity=0.095 Sum_probs=6.7
Q ss_pred hhhhhhhhhHHHH
Q 005993 563 LGQLKQENHELKK 575 (666)
Q Consensus 563 ~~~~~~e~~~~~~ 575 (666)
+..+++|.++|.+
T Consensus 8 ~~~~~~~~r~l~~ 20 (378)
T TIGR01554 8 REEIVAEIRSLLD 20 (378)
T ss_pred HHHHHHHHHHHHh
Confidence 4445555555554
No 435
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=35.86 E-value=3.4e+02 Score=26.27 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005993 612 QESLIDIFAEERDRREREEENLRKKIKD 639 (666)
Q Consensus 612 q~~li~~f~eer~~~~~e~~~lr~kl~~ 639 (666)
..++-.-|..||++|..-...|+-+|+.
T Consensus 58 ~~~i~~q~~~e~~~r~e~k~~l~~ql~q 85 (131)
T PF11068_consen 58 IQSIQQQFEQEKQERLEQKNQLLQQLEQ 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888887666666655543
No 436
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.81 E-value=4.7e+02 Score=26.98 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005993 628 REEENLRKKIKDASDTI 644 (666)
Q Consensus 628 ~e~~~lr~kl~~~~~~i 644 (666)
.|.|.++.||+.|-...
T Consensus 153 ke~eK~~~K~~k~~~~~ 169 (239)
T cd07647 153 KEAEKLKKKAAQCKTSA 169 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46678888888764443
No 437
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=35.67 E-value=2.4e+02 Score=27.13 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=28.6
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHh--HHHHHHhhhcHHHHHHHHHHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGE--LQEERERCRSLEAQLKVMQQTI 605 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~--~~~e~~~~~~l~~~~~~~~~~~ 605 (666)
.|||..| +|+..++.|+...+.. ...-......|..+|+.+.+.+
T Consensus 67 ~tvLALL-DElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 67 ATVLALL-DELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666544 8888888888888766 3333345555555666665555
No 438
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=35.67 E-value=45 Score=32.78 Aligned_cols=47 Identities=30% Similarity=0.434 Sum_probs=22.3
Q ss_pred hhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHH
Q 005993 564 GQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQ 612 (666)
Q Consensus 564 ~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq 612 (666)
.+|+.|..+||+-+... +.|.|.-|--.|+-++..+..+||+++++.
T Consensus 43 ~~l~~Ei~~l~~E~~~i--S~qDeFAkwaKl~Rk~~kl~~el~~~~~~~ 89 (161)
T PF04420_consen 43 RQLRKEILQLKRELNAI--SAQDEFAKWAKLNRKLDKLEEELEKLNKSL 89 (161)
T ss_dssp HHHHHHHHHHHHHHTTS---TTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333332 235566555555555555555555555443
No 439
>PLN02381 valyl-tRNA synthetase
Probab=35.57 E-value=93 Score=39.32 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=19.1
Q ss_pred hhcCCCCCHHHHHHHHhhcCC--------CeeEEEEEcc
Q 005993 147 VQWSPFSSEADLLHQFNLMKD--------HGTRIIIYNL 177 (666)
Q Consensus 147 lkySPF~sE~eLl~Qfd~Ig~--------~GT~III~NL 177 (666)
++|-|=.-...+...++.|.+ =||.|=+|-.
T Consensus 494 i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~ 532 (1066)
T PLN02381 494 LEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYV 532 (1066)
T ss_pred eEEEChHHHHHHHHHHhcCccceeeeecccCCccceEEe
Confidence 456664445566677776632 2999877653
No 440
>PRK14139 heat shock protein GrpE; Provisional
Probab=35.56 E-value=2.5e+02 Score=28.68 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH
Q 005993 569 ENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ 603 (666)
Q Consensus 569 e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~ 603 (666)
+..+|+++|..+++.+..-.++..-+.+.+++.++
T Consensus 33 e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rK 67 (185)
T PRK14139 33 AAPALEAELAEAEAKAAELQDSFLRAKAETENVRR 67 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333444455555555544
No 441
>PRK14148 heat shock protein GrpE; Provisional
Probab=35.42 E-value=2e+02 Score=29.66 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=31.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 592 RSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKI 651 (666)
Q Consensus 592 ~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~ 651 (666)
..|+.++++++.++++++..--.+.-=|.--|.|-.+|.+.+++-- ..+.+.+||.=+
T Consensus 43 ~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a--~~~~~~~LLpV~ 100 (195)
T PRK14148 43 ERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFG--IEKFAKELLPVI 100 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHH
Confidence 3455666666666666654444455555556666666666655432 233444444433
No 442
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=35.36 E-value=2.2e+02 Score=29.28 Aligned_cols=53 Identities=17% Similarity=0.380 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 005993 593 SLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMK 658 (666)
Q Consensus 593 ~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~~ 658 (666)
...+.++.|.++ |..|+++-...|.|+ .++.|||..|+|| +..|++.....+|
T Consensus 80 ~rqEa~eaAR~R---mQEE~dakA~~~kEK--q~q~EEEKRrqki--------e~we~~q~Gks~k 132 (190)
T PF06936_consen 80 RRQEAMEAARRR---MQEELDAKAEEYKEK--QKQEEEEKRRQKI--------EMWESMQEGKSYK 132 (190)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------HHHHH--------
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------HHHHHHHHHHhcc
Confidence 334444444443 444455555555443 3677778888888 3455555544444
No 443
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=35.32 E-value=4.2e+02 Score=26.41 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005993 559 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 638 (666)
Q Consensus 559 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~ 638 (666)
|.+-...-++......++|...|..+.+|..-..+.-++|+.-.++|+...+..-..+.-+.|.-..--.|...|..+-.
T Consensus 62 L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~ 141 (158)
T PF09744_consen 62 LETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERER 141 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHh
Q 005993 639 DASDTIQDLLDKIK 652 (666)
Q Consensus 639 ~~~~~i~~~~~~~~ 652 (666)
+-..+..+++++.+
T Consensus 142 e~l~~~~e~ver~k 155 (158)
T PF09744_consen 142 ELLRKLKEHVERQK 155 (158)
T ss_pred HHHHHHHHHHHHHH
No 444
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=35.29 E-value=3.5e+02 Score=30.56 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=25.5
Q ss_pred CccCccccchhhhhhhhhhhHHHHHHHHhHHhHHH
Q 005993 552 HFLSDCSLGANLGQLKQENHELKKRLEKKEGELQE 586 (666)
Q Consensus 552 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 586 (666)
-.|++..+.+-+.+|+.....|+.++.+++..+..
T Consensus 88 ~~ld~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 88 VVYDNGNEENQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred EEECchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777888888888888888887766543
No 445
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=34.99 E-value=5.2e+02 Score=26.54 Aligned_cols=29 Identities=34% Similarity=0.675 Sum_probs=25.6
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLID 617 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~ 617 (666)
.+|..||.||+.+.+-++-+++|.-++.+
T Consensus 71 tRCslLEKQLeyMRkmv~~ae~er~~~le 99 (178)
T PF14073_consen 71 TRCSLLEKQLEYMRKMVESAEKERNAVLE 99 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 79999999999999999999988877664
No 446
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.99 E-value=3.4e+02 Score=32.62 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=32.6
Q ss_pred HHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 607 ELNKEQESL---IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 607 ~~~keq~~l---i~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
|+-|+|... -|+|- +---+-...|+++|+.|+.+-.=|-.+|+.++.
T Consensus 438 Ei~~~QA~M~E~~Dt~~---~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R 487 (852)
T KOG4787|consen 438 ELRKEQAQMNELKDTVF---KSDVQKVISLATKLEQANKQCRILNERLNKLHR 487 (852)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHH
Confidence 556666544 44443 333455678999999999998888888887653
No 447
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=34.96 E-value=1.6e+02 Score=30.14 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=25.5
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH--HHHHHHHHHHHHHH
Q 005993 571 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQ--TIEELNKEQESLID 617 (666)
Q Consensus 571 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~--~~~~~~keq~~li~ 617 (666)
.-|++.+.+.++.+|.--+-|.+.++++.+++. ++|++.++-.+|-.
T Consensus 82 ~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~k 130 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKK 130 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 334445555555555555667777777766655 45555544444433
No 448
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=34.91 E-value=51 Score=38.11 Aligned_cols=21 Identities=43% Similarity=0.517 Sum_probs=10.5
Q ss_pred hhhhhhhhHHHHHHHHhHHhH
Q 005993 564 GQLKQENHELKKRLEKKEGEL 584 (666)
Q Consensus 564 ~~~~~e~~~~~~~~~~~~~~~ 584 (666)
+.||.|+..||++|.+.+++.
T Consensus 369 k~lKeeI~~lk~~l~~~~~~~ 389 (492)
T PF06273_consen 369 KFLKEEINALKERLEEEEASS 389 (492)
T ss_pred hhhhhhHHHHHHHHHhhhhhh
Confidence 345555555555555554433
No 449
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=34.84 E-value=3.9e+02 Score=30.74 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=13.8
Q ss_pred hhhhhhhhhHHHHHHHHhHHhH
Q 005993 563 LGQLKQENHELKKRLEKKEGEL 584 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~ 584 (666)
+.+|+++..+|+..+.+.+..+
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~ 94 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRG 94 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666543
No 450
>PRK14144 heat shock protein GrpE; Provisional
Probab=34.82 E-value=1.8e+02 Score=30.12 Aligned_cols=41 Identities=29% Similarity=0.305 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 005993 594 LEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLR 634 (666)
Q Consensus 594 l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr 634 (666)
|+++++.++++++++....-.+.-=|-.=|.|-.+|.++++
T Consensus 50 l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~ 90 (199)
T PRK14144 50 LEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAH 90 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555433333333334444444444444443
No 451
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=34.79 E-value=33 Score=41.51 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=44.2
Q ss_pred ccccchhcccCCCCCCCcceEEEEECCCCCCHHHHHHHH-hcCCCCC-----CCccccccccCCcccccccccCCeEEEE
Q 005993 10 SNSKMLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCM-SLGYSAK-----SKAANTIGQYGNGFKTSTMRLGADVIVF 83 (666)
Q Consensus 10 ~~a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k-----~~~~~~IGrYGnGfKTgSMRLGkdviVf 83 (666)
|-|.-+-++++++ ...+.|+|||.||.++++...= +|-.|.- ......-|--|--| |+.+==..+.|.
T Consensus 36 A~At~V~v~V~~~----t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGfRGeAL--asIsd~s~l~v~ 109 (1142)
T KOG1977|consen 36 AEATCVAVRVNME----TFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGFRGEAL--ASISDMSSLVVI 109 (1142)
T ss_pred cCceEEEEEecCc----eeEEEEEecCCCccHHHHHHHHhhhhhhhceeccccccccccccchhhh--hhhhhhhhhhhh
Confidence 5566677788874 5578999999999999997765 3322211 11122344434444 233333456788
Q ss_pred eeecC
Q 005993 84 SCCCG 88 (666)
Q Consensus 84 SK~~g 88 (666)
||+.+
T Consensus 110 skkk~ 114 (1142)
T KOG1977|consen 110 SKKKN 114 (1142)
T ss_pred hhhcC
Confidence 88765
No 452
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=34.74 E-value=1.2e+02 Score=25.65 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=36.5
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 005993 571 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 611 (666)
Q Consensus 571 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke 611 (666)
.++-+||..+|..++.=.+.|+...+.+.-++.-+|++-|-
T Consensus 4 k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~ 44 (57)
T PF02346_consen 4 KDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKY 44 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999999998764
No 453
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=34.65 E-value=3.1e+02 Score=28.16 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHH
Q 005993 569 ENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREE-ENLRKKIK 638 (666)
Q Consensus 569 e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~-~~lr~kl~ 638 (666)
+....++++.|++..-+ -+|.-.++.++++++++.+++.++=+.+-+..-+|=.|.+.|. ..+++-|+
T Consensus 131 ~l~kkr~~~~Kl~~~~~--~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~ 199 (224)
T cd07623 131 TLTKKREAKAKLELSGR--TDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIII 199 (224)
T ss_pred HHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555543221 2577788899999999999999999999999999999888663 33444444
No 454
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=34.62 E-value=67 Score=35.45 Aligned_cols=39 Identities=28% Similarity=0.351 Sum_probs=27.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHH---HHH----HhhhcHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQ---EER----ERCRSLEAQLKVM 601 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~---~e~----~~~~~l~~~~~~~ 601 (666)
+..|..++.+|++||..++.+|+ +.| |||+.|++-|-+|
T Consensus 177 v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLdda 222 (323)
T PF08537_consen 177 VILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDA 222 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55677889999999988887763 333 6666666665554
No 455
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=34.59 E-value=2.4e+02 Score=36.46 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 596 AQLKVMQQTIEELNKEQESLIDIFAEERD 624 (666)
Q Consensus 596 ~~~~~~~~~~~~~~keq~~li~~f~eer~ 624 (666)
.+.++|+++++ --.++..+.+-+.|.|.
T Consensus 1654 ~~A~~a~q~~~-~lq~~~~~~~~l~~~r~ 1681 (1758)
T KOG0994|consen 1654 EQALSAEQGLE-ILQKYYELVDRLLEKRM 1681 (1758)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 34466677777 33456666777766554
No 456
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.52 E-value=3.3e+02 Score=31.42 Aligned_cols=55 Identities=20% Similarity=0.360 Sum_probs=38.4
Q ss_pred hhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 570 NHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 624 (666)
Q Consensus 570 ~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~ 624 (666)
-..+.+.|.+.+++-..+.+--|.||++.++++++|-+.++.|.+|.--|.+-|.
T Consensus 154 ~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~ 208 (446)
T KOG4438|consen 154 YQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKK 208 (446)
T ss_pred HHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444444444444555677889999999999999999999988766655443
No 457
>PRK14148 heat shock protein GrpE; Provisional
Probab=34.49 E-value=2.7e+02 Score=28.66 Aligned_cols=87 Identities=18% Similarity=0.285 Sum_probs=40.1
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDRR----EREEENLR 634 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~~~----~~e~~~lr 634 (666)
+.-|..|+++..+||+|+.+..+++.-= +|-++.+.+++.+ -++.+-++---.+|-| ||... +.+..+|.
T Consensus 46 ~~~l~~l~~e~~elkd~~lR~~Ae~eN~---rKR~~rE~e~~~~~a~~~~~~~LLpV~Dnl--erAl~~~~~~~~~~~l~ 120 (195)
T PRK14148 46 KDTIKELEDSCDQFKDEALRAKAEMENI---RKRAERDVSNARKFGIEKFAKELLPVIDSI--EQALKHEVKLEEAIAMK 120 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHhHH--HHHHhccccchhHHHHH
Confidence 3335555566666666665555554322 2233333344333 4444444444445544 33322 11223455
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005993 635 KKIKDASDTIQDLLDKI 651 (666)
Q Consensus 635 ~kl~~~~~~i~~~~~~~ 651 (666)
.-++-..+.+..+|++.
T Consensus 121 ~Gv~mi~k~l~~vL~k~ 137 (195)
T PRK14148 121 EGIELTAKMLVDILKKN 137 (195)
T ss_pred HHHHHHHHHHHHHHHHC
Confidence 55555555555555543
No 458
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=34.40 E-value=4.7e+02 Score=32.83 Aligned_cols=10 Identities=20% Similarity=-0.041 Sum_probs=6.9
Q ss_pred CeEEEEeeec
Q 005993 78 ADVIVFSCCC 87 (666)
Q Consensus 78 kdviVfSK~~ 87 (666)
+.+||+|...
T Consensus 28 Rt~I~gTh~e 37 (980)
T KOG0980|consen 28 RTIIVGTHDE 37 (980)
T ss_pred hheeeeeccc
Confidence 5677777754
No 459
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=34.34 E-value=4.1e+02 Score=31.82 Aligned_cols=8 Identities=25% Similarity=0.194 Sum_probs=5.6
Q ss_pred CCCeeEEE
Q 005993 166 KDHGTRII 173 (666)
Q Consensus 166 g~~GT~II 173 (666)
|-.||.+-
T Consensus 81 GYNGTvfa 88 (607)
T KOG0240|consen 81 GYNGTVFA 88 (607)
T ss_pred ccceeEEE
Confidence 66888664
No 460
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=34.31 E-value=4.8e+02 Score=28.52 Aligned_cols=104 Identities=26% Similarity=0.341 Sum_probs=67.3
Q ss_pred CccCccccchhhhhhhhhhhHHHHHHHHhHHhH------------HHHHHhhhcHHHHHHHH------------------
Q 005993 552 HFLSDCSLGANLGQLKQENHELKKRLEKKEGEL------------QEERERCRSLEAQLKVM------------------ 601 (666)
Q Consensus 552 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~------------~~e~~~~~~l~~~~~~~------------------ 601 (666)
.++-||-|.-....||.|..+-|..|...+.+| ..=+.||+.|..+-+++
T Consensus 168 ~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAm 247 (330)
T KOG2991|consen 168 STLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAM 247 (330)
T ss_pred HHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHH
Confidence 567778777778888888888887777766665 11126777776554332
Q ss_pred -HHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHH---HHHhhhh
Q 005993 602 -QQTIEELNKEQESLIDIFAEE---RDRREREEENLRKKIKDASDTIQDLL---DKIKLLE 655 (666)
Q Consensus 602 -~~~~~~~~keq~~li~~f~ee---r~~~~~e~~~lr~kl~~~~~~i~~~~---~~~~~~~ 655 (666)
..+-||+.+-|+-|-|..-|- =.+-.--.=-|..|||+--..||.|- +++..+-
T Consensus 248 QKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav 308 (330)
T KOG2991|consen 248 QKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAV 308 (330)
T ss_pred HHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 225678888888887755432 12222223358899999999998874 4555444
No 461
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=34.25 E-value=4.3e+02 Score=25.43 Aligned_cols=35 Identities=37% Similarity=0.502 Sum_probs=19.2
Q ss_pred HHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 005993 576 RLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 610 (666)
Q Consensus 576 ~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~k 610 (666)
.++.++..++.=.-....|+++|.+++.-|+|+++
T Consensus 14 q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~ 48 (119)
T COG1382 14 QLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEK 48 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444443334455666777776666666654
No 462
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=34.06 E-value=4.6e+02 Score=34.19 Aligned_cols=12 Identities=17% Similarity=0.302 Sum_probs=6.8
Q ss_pred CCCCHHHHHHHH
Q 005993 37 GGMNPDKMRHCM 48 (666)
Q Consensus 37 ~GMd~~el~~~m 48 (666)
.|+....|...|
T Consensus 61 ~~~~~r~~~~~l 72 (1353)
T TIGR02680 61 DGDSRKRMAWNL 72 (1353)
T ss_pred CCCccccHHHHH
Confidence 345555665555
No 463
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=33.64 E-value=4.4e+02 Score=25.36 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=27.9
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 573 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF 619 (666)
Q Consensus 573 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f 619 (666)
|.+|=.+..++|..=-+..+..+..+.+++++|+.+.+|-..+|+--
T Consensus 31 l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A 77 (159)
T PRK09173 31 LDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAA 77 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444335555666666777777777777776666543
No 464
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=33.50 E-value=1.5e+02 Score=25.35 Aligned_cols=43 Identities=30% Similarity=0.450 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 005993 566 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL 608 (666)
Q Consensus 566 ~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~ 608 (666)
+.+|....|.--...+..|+.--.+++.|+.+++.++.++|++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 465
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.40 E-value=3e+02 Score=34.17 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=10.9
Q ss_pred HHHHHHHH-HHHHHhhhccc
Q 005993 356 RLEARLIQ-MQKDYWNNNCH 374 (666)
Q Consensus 356 rLe~rL~q-~~~eYW~~~c~ 374 (666)
|.+++++= |+--||-.+|.
T Consensus 494 r~qt~vglLmlL~~WL~~cp 513 (970)
T KOG0946|consen 494 RHQTRVGLLMLLITWLYGCP 513 (970)
T ss_pred hHHHHHHHHHHHHHHHcCCc
Confidence 45555553 45578865553
No 466
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=33.36 E-value=5.8e+02 Score=26.59 Aligned_cols=102 Identities=25% Similarity=0.408 Sum_probs=0.0
Q ss_pred ccCccccchhhhhhhhh-------hhHHHHHHHHhHHh-----------------HHHHHHhhhcH-HHHHHHHHHHHHH
Q 005993 553 FLSDCSLGANLGQLKQE-------NHELKKRLEKKEGE-----------------LQEERERCRSL-EAQLKVMQQTIEE 607 (666)
Q Consensus 553 ~~~~~~~~~~~~~~~~e-------~~~~~~~~~~~~~~-----------------~~~e~~~~~~l-~~~~~~~~~~~~~ 607 (666)
..+..++.++++.++.| +.+|+.|+..+... +-.|.++-+.+ ..+++.++..-+.
T Consensus 1 ~~s~~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq 80 (207)
T PF05010_consen 1 KYSQKDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQ 80 (207)
T ss_pred CCcHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993 608 LNKEQESLIDIFAEERDRRE----------REEENLRKKIKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 608 ~~keq~~li~~f~eer~~~~----------~e~~~lr~kl~~~~~~i~~~~~~~~~~ 654 (666)
+...-.++=..|+.-=.|-+ .-||.|++.+++....|...-.+..++
T Consensus 81 ~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 81 AYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQAL 137 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=33.34 E-value=1.5e+02 Score=29.94 Aligned_cols=47 Identities=26% Similarity=0.396 Sum_probs=0.0
Q ss_pred hHHHHH-HhhhcHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005993 583 ELQEER-ERCRSLEAQLKVM--QQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDA 640 (666)
Q Consensus 583 ~~~~e~-~~~~~l~~~~~~~--~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~ 640 (666)
+||++. -|-+.|+++++.+ ++++.|+ ..-|.+.-+.+|-+.+|++||
T Consensus 26 ~lq~~~e~k~~~l~e~l~~~e~~r~v~ea-----------~~~ke~~~Kl~E~iekkieea 75 (175)
T COG4741 26 SLQGKVESKARELEETLQKAERERLVNEA-----------QARKEEEWKLKEWIEKKIEEA 75 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
No 468
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.28 E-value=2.4e+02 Score=32.79 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=18.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Q 005993 616 IDIFAEERDRREREEENLRKKIK 638 (666)
Q Consensus 616 i~~f~eer~~~~~e~~~lr~kl~ 638 (666)
+...+||-.++..+-++||++|+
T Consensus 354 L~a~~eei~~~eel~~~Lrsele 376 (521)
T KOG1937|consen 354 LEAVDEEIESNEELAEKLRSELE 376 (521)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHh
Confidence 34568888899999999999887
No 469
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=33.07 E-value=3.9e+02 Score=34.65 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=7.9
Q ss_pred CCCeEEEEcCe
Q 005993 239 PPGFRIIIRGK 249 (666)
Q Consensus 239 pprmrIiLrGk 249 (666)
|.+|-|=.+|+
T Consensus 203 PDNvLld~~GH 213 (1317)
T KOG0612|consen 203 PDNVLLDKSGH 213 (1317)
T ss_pred cceeEecccCc
Confidence 66777777775
No 470
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=33.03 E-value=4.2e+02 Score=24.94 Aligned_cols=37 Identities=16% Similarity=0.398 Sum_probs=14.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005993 617 DIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKL 653 (666)
Q Consensus 617 ~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~ 653 (666)
++|....+.=+..-+.|.+.|.+..+.++.+..++..
T Consensus 97 ~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 97 EILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444443
No 471
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=32.98 E-value=3.9e+02 Score=24.49 Aligned_cols=37 Identities=30% Similarity=0.429 Sum_probs=23.6
Q ss_pred HHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 005993 574 KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 610 (666)
Q Consensus 574 ~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~k 610 (666)
-..++..++.++.=......|+.++.++...++|+++
T Consensus 9 ~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~ 45 (110)
T TIGR02338 9 LAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELER 45 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555555555456667777777777777777765
No 472
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=32.96 E-value=3.2e+02 Score=32.62 Aligned_cols=6 Identities=33% Similarity=0.484 Sum_probs=2.5
Q ss_pred eEEecC
Q 005993 305 NVYHKN 310 (666)
Q Consensus 305 ~VYhkN 310 (666)
+|++.|
T Consensus 216 ~VkQ~n 221 (607)
T KOG0240|consen 216 HVKQEN 221 (607)
T ss_pred EEEecc
Confidence 344433
No 473
>PRK14160 heat shock protein GrpE; Provisional
Probab=32.82 E-value=3.3e+02 Score=28.47 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=7.3
Q ss_pred HHHHHhhhHHHHHHHH
Q 005993 619 FAEERDRREREEENLR 634 (666)
Q Consensus 619 f~eer~~~~~e~~~lr 634 (666)
|--=|.|-.+|.+.++
T Consensus 91 feN~RKR~~kE~e~~~ 106 (211)
T PRK14160 91 YDNYRKRTAKEKEGIY 106 (211)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334445444444443
No 474
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=32.78 E-value=2.7e+02 Score=32.81 Aligned_cols=64 Identities=17% Similarity=0.287 Sum_probs=33.6
Q ss_pred HhhhcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 589 ERCRSLEAQLKVMQQTIEEL-----NKEQESLIDIFAEERDRRER-EEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~-----~keq~~li~~f~eer~~~~~-e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
+....||.-+..++..|++. ..+.+.|-+...+..+--+. +.+.+++|+++..+-++.+..++-
T Consensus 527 eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wL~~~~~~~i~~k~~~L~~~~~~~~~~~~ 596 (627)
T PRK00290 527 EARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGEDKEAIKAKTEELTQASQKLGEAMY 596 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666421 11112222222221111110 456788888888888888887663
No 475
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=32.73 E-value=4.2e+02 Score=24.86 Aligned_cols=6 Identities=33% Similarity=0.778 Sum_probs=2.2
Q ss_pred HHHHHH
Q 005993 633 LRKKIK 638 (666)
Q Consensus 633 lr~kl~ 638 (666)
++.+|.
T Consensus 160 l~~~l~ 165 (202)
T PF01442_consen 160 LRESLE 165 (202)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 476
>PRK13410 molecular chaperone DnaK; Provisional
Probab=32.66 E-value=3.2e+02 Score=32.79 Aligned_cols=64 Identities=9% Similarity=0.269 Sum_probs=34.4
Q ss_pred HhhhcHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 589 ERCRSLEAQLKVMQQTIEE---------LNKEQESLIDIFAEERDRRER-EEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~---------~~keq~~li~~f~eer~~~~~-e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
++...||+-+.+++++|++ ...+++.+...+.+-++--+. .++.++.++++-...++.|.+.+.
T Consensus 529 e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~ 602 (668)
T PRK13410 529 EKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVR 602 (668)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777754 233444444444443332221 223455555555566666666553
No 477
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=32.61 E-value=2.7e+02 Score=35.21 Aligned_cols=98 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCCCccCccccchhhhhhhhhhhHHHHHHHHhHHhHHHHH---HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005993 549 YPEHFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEER---ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR 625 (666)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~---~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~ 625 (666)
...++..-.+.++.++.|.++-.-+-|==+....++.+++ +-+....+|++..++.|++++..++-++.=+++=++.
T Consensus 813 ~s~~~~~~ek~~~~~~e~~e~p~t~~eld~~I~~e~t~~~~~~n~ne~~vq~y~~r~~el~~l~~~~~~~~~~le~i~~k 892 (1072)
T KOG0979|consen 813 MSPATNKIEKSLVLMKELAEEPTTMDELDQAITDELTRALKFENVNEDAVQQYEVREDELRELETKLEKLSEDLERIKDK 892 (1072)
T ss_pred ccccccchhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 005993 626 REREEENLRKKIKDASDTIQD 646 (666)
Q Consensus 626 ~~~e~~~lr~kl~~~~~~i~~ 646 (666)
=....++++.||++-...|.+
T Consensus 893 l~~~ke~w~~~le~~V~~In~ 913 (1072)
T KOG0979|consen 893 LSDVKEVWLPKLEEMVEQINE 913 (1072)
T ss_pred HhhHHHHHHHHHHHHHHHHHH
No 478
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=32.53 E-value=2.3e+02 Score=31.44 Aligned_cols=54 Identities=30% Similarity=0.426 Sum_probs=30.8
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHH
Q 005993 584 LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKI---KDASDTIQDLL 648 (666)
Q Consensus 584 ~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl---~~~~~~i~~~~ 648 (666)
|.-|+.-+|.|.+++++++++.+.+.++.... ..--.+|..+| ++|+.-||+.+
T Consensus 96 L~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k-----------~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 96 LEFELEQRKRLEEQLKELEQRKKKLQQENKKK-----------KKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 45566667777777777777666655544322 22233444444 46666666655
No 479
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=32.42 E-value=1.3e+02 Score=34.47 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=12.1
Q ss_pred HhhhcHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELN 609 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~ 609 (666)
++.+.|++|++..+++|++++
T Consensus 170 ~Rl~~L~~qi~~~~~~l~~~~ 190 (475)
T PF10359_consen 170 ERLDELEEQIEKHEEKLGELE 190 (475)
T ss_pred HHHHHHHHHHHHHHHhhhccc
Confidence 334455666666666666654
No 480
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=32.36 E-value=1.6e+02 Score=31.62 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=11.5
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQE 613 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~ 613 (666)
.++++|-.+-.++.+.||+++.|-.
T Consensus 118 ~~n~~L~~~n~el~~~le~~~~~l~ 142 (292)
T KOG4005|consen 118 AINESLLAKNHELDSELELLRQELA 142 (292)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 481
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=32.26 E-value=4.1e+02 Score=26.90 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=18.8
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 622 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ee 622 (666)
++...|+++.++++.++.++.+.-+.+..-+.|.
T Consensus 127 ~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 127 EEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666655555555444443
No 482
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=32.24 E-value=2.4e+02 Score=24.65 Aligned_cols=13 Identities=8% Similarity=0.087 Sum_probs=4.6
Q ss_pred hhhcHHHHHHHHH
Q 005993 590 RCRSLEAQLKVMQ 602 (666)
Q Consensus 590 ~~~~l~~~~~~~~ 602 (666)
.+..|..++++++
T Consensus 19 ti~~Lq~e~eeLk 31 (72)
T PF06005_consen 19 TIALLQMENEELK 31 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 483
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.21 E-value=1.9e+02 Score=29.12 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=26.2
Q ss_pred HHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 584 LQEERERCRS-LEAQLKVMQQTIEELNKEQESLIDIFAEER 623 (666)
Q Consensus 584 ~~~e~~~~~~-l~~~~~~~~~~~~~~~keq~~li~~f~eer 623 (666)
++.++.+-+. |+.++++++.++|.++++-..=++.|-++|
T Consensus 128 ~~e~L~~k~~~l~~ev~~a~~~~e~~~~~~~~E~~rF~~~K 168 (200)
T cd07624 128 SVEELNKKRLELLKEVEKLQDKLECANADLKADLERWKQNK 168 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544444 888888898888888886544444444443
No 484
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=32.19 E-value=38 Score=40.06 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=30.1
Q ss_pred hhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHh
Q 005993 15 LQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMS 49 (666)
Q Consensus 15 ~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~ms 49 (666)
..++|+.....+.-.|.|-|||+|+.|+-+.++..
T Consensus 519 ~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFe 553 (603)
T COG4191 519 RRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFE 553 (603)
T ss_pred CeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcC
Confidence 45677777788888999999999999999999985
No 485
>PRK14160 heat shock protein GrpE; Provisional
Probab=32.06 E-value=5.5e+02 Score=26.84 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=24.0
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH
Q 005993 561 ANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ 603 (666)
Q Consensus 561 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~ 603 (666)
..+++|++++..|++.+.++++.+..-.++..-+.+.+++.++
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RK 96 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRK 96 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666666554433444444444544443
No 486
>KOG4762 consensus DNA replication factor [Replication, recombination and repair]
Probab=31.94 E-value=1.5e+02 Score=34.68 Aligned_cols=94 Identities=23% Similarity=0.302 Sum_probs=69.8
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhH-HHHHHhhhcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGEL-QEERERCRSLEAQLKVMQQTIEELNKEQE-SLIDIFAEERDRREREEENLRKKIKD 639 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~-~~e~~~~~~l~~~~~~~~~~~~~~~keq~-~li~~f~eer~~~~~e~~~lr~kl~~ 639 (666)
..++|+.--.+|-||+..+|... ..+..+|+.++-+++... -+- |-- -|-.+|--|| |+-...|.+=+|+.-
T Consensus 361 ~~s~ls~~~~sLlErIRaKEa~k~~~~m~~~~~~~~r~~~l~----~Lp-~l~riIr~vF~Ser-r~~it~e~iv~ki~~ 434 (498)
T KOG4762|consen 361 DSSQLSGRASSLLERIRAKEAAKRLAQMTERKEQERREQRLA----LLP-ELVRIIRSVFVSER-RRVITMEEIVKKIQA 434 (498)
T ss_pred ChhhhccchHHHHHHHHHHHHHHHHHHhhhCchhHHHHHHHH----hhH-HHHHHHHHHHHhcc-ccceeHHHHHHHHHh
Confidence 46778888899999999999875 445588888776665433 333 222 2557899999 889999999999986
Q ss_pred HHHHH---HHHHHHHhhhhhcCCCCc
Q 005993 640 ASDTI---QDLLDKIKLLEKMKTPSI 662 (666)
Q Consensus 640 ~~~~i---~~~~~~~~~~~~~~~~~~ 662 (666)
..++| +++-++|..|. +..|.|
T Consensus 435 s~~~i~s~~eve~hL~LL~-e~lP~W 459 (498)
T KOG4762|consen 435 SDSNITSPREVEKHLSLLS-ELLPDW 459 (498)
T ss_pred cccccCCHHHHHHHHHHHH-HHhHHH
Confidence 55554 88889998887 566665
No 487
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=31.93 E-value=2.9e+02 Score=30.29 Aligned_cols=127 Identities=23% Similarity=0.318 Sum_probs=0.0
Q ss_pred ccccCCCcccCCCCCCCCCCCcccchhhhccccCCCCcccccccccccCCC-CCCcCCCCccccccccccCCCCCCCCCC
Q 005993 457 VKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKD-GLHRTHPSACLVDSESQQDGASGGSSVR 535 (666)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (666)
++..++-.+.++.++++--+++. ..+--....|.+....+++-+-+ ++--.||+ ++|
T Consensus 1 r~~~sP~~~~~~yg~ss~~SSsn-----SgS~KgSd~Sp~~rr~~rY~~C~dNHGikPP~-----------------PEQ 58 (305)
T PF15290_consen 1 RNQLSPVNIRDSYGPSSTPSSSN-----SGSCKGSDSSPTMRRSGRYMSCGDNHGIKPPN-----------------PEQ 58 (305)
T ss_pred CCCCCCCCCcccccCcCCcccCC-----CccccCCCCCCCCCCCCceeecccCCCCCCCC-----------------HHH
Q ss_pred CCCCCCCCCcccCCCCCccCccccchhhhhhhhhhhHHHHHHHHhHHhHHHHH------------HhhhcHHHHH--HHH
Q 005993 536 PFMPSQSKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEER------------ERCRSLEAQL--KVM 601 (666)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~------------~~~~~l~~~~--~~~ 601 (666)
--|+.|-|+ -| |.+||-...|-.+||..+|-++..=+ |.|--.|+|| .||
T Consensus 59 YLTPLQQKE---------------V~-iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEA 122 (305)
T PF15290_consen 59 YLTPLQQKE---------------VC-IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEA 122 (305)
T ss_pred hcChHHHHH---------------HH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005993 602 QQTIEELNKEQESLIDIFAE 621 (666)
Q Consensus 602 ~~~~~~~~keq~~li~~f~e 621 (666)
++.|..|.+--|..-.-++|
T Consensus 123 RkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 123 RKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHhhhch
No 488
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=31.86 E-value=15 Score=43.64 Aligned_cols=102 Identities=26% Similarity=0.407 Sum_probs=0.0
Q ss_pred cCccccchhhhhhhhhhhHHH--------HHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005993 554 LSDCSLGANLGQLKQENHELK--------KRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR 625 (666)
Q Consensus 554 ~~~~~~~~~~~~~~~e~~~~~--------~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~ 625 (666)
+....+..-|..|+.||..|+ +++..++..|..--..+..|+++...+.+++.++..+-+.|...+.+....
T Consensus 452 l~~~~l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~~~ 531 (713)
T PF05622_consen 452 LNPAELRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSLQEQGSK 531 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred hH------HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005993 626 RE------REEENLRKKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 626 ~~------~e~~~lr~kl~~~~~~i~~~~~~~~~~~ 655 (666)
-+ ++-+..-++|.++...++.+-++|..++
T Consensus 532 ~~d~~~lk~~le~~~~~l~e~~~e~~~~~~~le~l~ 567 (713)
T PF05622_consen 532 SEDSSELKQKLEEHLEKLRELKDELQKKREQLEELE 567 (713)
T ss_dssp ------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=31.83 E-value=1.6e+02 Score=24.56 Aligned_cols=48 Identities=29% Similarity=0.414 Sum_probs=0.0
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005993 590 RCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKI 637 (666)
Q Consensus 590 ~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl 637 (666)
....+..++++++++++++.+|.+.|-.-...=+.-.+-=|+--|.+|
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~l 65 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKL 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc
No 490
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=31.81 E-value=3.3e+02 Score=29.51 Aligned_cols=82 Identities=22% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 577 LEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 577 ~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
|..+|-+++.++.+-=+-...+.++++.|.++.+....=|+--...=+.=..+|.+|..|++---..++-.-.+|..|..
T Consensus 139 lL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 139 LLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred cC
Q 005993 657 MK 658 (666)
Q Consensus 657 ~~ 658 (666)
.+
T Consensus 219 vR 220 (267)
T PF10234_consen 219 VR 220 (267)
T ss_pred cC
No 491
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=31.68 E-value=1.9e+02 Score=29.34 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHHHHHHH----------------------------hHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEK----------------------------KEGELQEERERCRSLEAQLKVMQQTIEELNKEQES 614 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~----------------------------~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~ 614 (666)
|.+.|+++.++|.-|.. +.+.+.+=...+..|+..++.++++........++
T Consensus 64 I~~AKK~Rke~kr~l~~~~~~~~~~~~~~~~~~~~~~~~it~~~v~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~ 143 (170)
T PRK13923 64 IKLAKKERKELRRQLGFSPSNLPDNVKTGDEIITSGISDLTLEDVLSEQIGKLQEEEEKLSWENQTLKQELAITEEDYRA 143 (170)
T ss_pred HHHHHHhhHHHhhccccCCCccccccccccccccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhHHHHH
Q 005993 615 LIDIFAEERDRREREEE 631 (666)
Q Consensus 615 li~~f~eer~~~~~e~~ 631 (666)
||.|+.+-|.-.-.+++
T Consensus 144 Li~Im~rark~~~~~~~ 160 (170)
T PRK13923 144 LIVIMNRARRMAILVED 160 (170)
T ss_pred HHHHHHHHHHcchhhhh
No 492
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=31.66 E-value=5.8e+02 Score=26.07 Aligned_cols=84 Identities=20% Similarity=0.346 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDR----REREEENLRKKI 637 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~~----~~~e~~~lr~kl 637 (666)
|..|+.++.+++++++++.+++. .-+|-++.+.+++.+ -++.+-++--..||-|---..- -|.+ .+|.+-+
T Consensus 45 i~~Le~q~~e~~~~~lr~~Ae~e---N~rkR~~re~e~~~k~a~e~~~~dlLpviDnlerAl~~~~~~~d~~-~~l~~Gv 120 (193)
T COG0576 45 IAELEAQLEELKDKYLRAQAEFE---NLRKRTEREREEAKKYAIEKFAKDLLPVIDNLERALEAAEDDKDPE-KALLEGV 120 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchH-HHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 005993 638 KDASDTIQDLLDK 650 (666)
Q Consensus 638 ~~~~~~i~~~~~~ 650 (666)
+--++.+.+.|++
T Consensus 121 em~~~~l~~~L~k 133 (193)
T COG0576 121 EMTLDQLLDALEK 133 (193)
T ss_pred HHHHHHHHHHHHH
No 493
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=31.66 E-value=3.6e+02 Score=24.90 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005993 582 GELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDA 640 (666)
Q Consensus 582 ~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~ 640 (666)
+.|+.|.+.-...-.+-+++.+.|.+.-++...++..-++....+.+|-+..+++++.|
T Consensus 28 ~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~ 86 (110)
T PF10828_consen 28 DRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTA 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=31.53 E-value=6e+02 Score=28.55 Aligned_cols=83 Identities=14% Similarity=0.188 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005993 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTI 644 (666)
Q Consensus 565 ~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i 644 (666)
+|+++|.+|.+.++.+-+..+.-.+-...+.++.+ +.+++-.+.--+-.+.-.-.|| ...+|++..+.|...|--.|
T Consensus 134 klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql~~aKlq~~~~l~a~~ee--~~~~e~~~glEKd~lak~~~ 210 (391)
T KOG1850|consen 134 KLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQLGKAKLQEIKLLTAKLEE--ASIQEKKSGLEKDELAKIML 210 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHH--HHHHHHHhhhhHHHHHHHHH
Q ss_pred HHHHHH
Q 005993 645 QDLLDK 650 (666)
Q Consensus 645 ~~~~~~ 650 (666)
.++...
T Consensus 211 e~~~~~ 216 (391)
T KOG1850|consen 211 EEMKQV 216 (391)
T ss_pred HHHHHH
No 495
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=31.49 E-value=4e+02 Score=24.14 Aligned_cols=86 Identities=24% Similarity=0.312 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhhhHHHHHH
Q 005993 571 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE------------------QESLIDIFAEERDRREREEEN 632 (666)
Q Consensus 571 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke------------------q~~li~~f~eer~~~~~e~~~ 632 (666)
..+-..++.+++.++.-......|+.++.+...-++|+..- .+.+++.+.+....=+.+.+.
T Consensus 2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~ 81 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKR 81 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 633 LRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 633 lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
|.+++++-...+++|-.+|+.+-+
T Consensus 82 l~~~~~~l~~~~~elk~~l~~~~~ 105 (105)
T cd00632 82 LERQEEDLQEKLKELQEKIQQAQK 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
No 496
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=31.44 E-value=5.1e+02 Score=25.41 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhHHHHHHHHHHHH-HHHHH
Q 005993 573 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID--------IFAEERDRREREEENLRKKIK-DASDT 643 (666)
Q Consensus 573 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~--------~f~eer~~~~~e~~~lr~kl~-~~~~~ 643 (666)
|.+|-.+..++|..=-...+....-+++++++|+++..+=..+|+ +..|.+.+-..|-+.+...-+ +-...
T Consensus 35 l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e 114 (161)
T COG0711 35 LDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAE 114 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhh
Q 005993 644 IQDLLDKIKL 653 (666)
Q Consensus 644 i~~~~~~~~~ 653 (666)
.++.++.|+.
T Consensus 115 ~~~a~~~l~~ 124 (161)
T COG0711 115 KERALEELRA 124 (161)
T ss_pred HHHHHHHHHH
No 497
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=31.29 E-value=5.2e+02 Score=32.24 Aligned_cols=89 Identities=30% Similarity=0.495 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------H
Q 005993 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF------------------------A 620 (666)
Q Consensus 565 ~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f------------------------~ 620 (666)
++--||++|.|.|..+-+.++.|++..+ +||...|.|+-.-|.--.+|---| +
T Consensus 977 ~~l~e~sdLnekLr~rL~q~eaeR~~~r---eqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~AD~gA 1053 (1480)
T COG3096 977 EMLSENSDLNEKLRQRLEQAEAERTRAR---EQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGA 1053 (1480)
T ss_pred hhhcccchhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCcCcch
Q ss_pred HHHhhhHHHH------------HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 621 EERDRREREE------------ENLRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 621 eer~~~~~e~------------~~lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
|||.|+...| -.+.+.|.-.-...+.|..+|+++|+
T Consensus 1054 eeRA~~RRDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~Er 1101 (1480)
T COG3096 1054 EERARIRRDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLER 1101 (1480)
T ss_pred HHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 498
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=31.22 E-value=4.6e+02 Score=29.48 Aligned_cols=93 Identities=15% Similarity=0.204 Sum_probs=0.0
Q ss_pred ccccchhhhhhhhhhhHHHHHHHHhH----HhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhh
Q 005993 556 DCSLGANLGQLKQENHELKKRLEKKE----GELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF-----AEERDRR 626 (666)
Q Consensus 556 ~~~~~~~~~~~~~e~~~~~~~~~~~~----~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f-----~eer~~~ 626 (666)
+|.+..-++.++++-.+|.+.+..-. ..-.+++-+..+--..+-++-++++.+.++-+.+.+++ .|-+.--
T Consensus 1 ~~~~~~~~e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~e~D~~~~~~~ 80 (359)
T PRK00591 1 KPSMLDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEEESDPEMREMA 80 (359)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005993 627 EREEENLRKKIKDASDTIQDLL 648 (666)
Q Consensus 627 ~~e~~~lr~kl~~~~~~i~~~~ 648 (666)
.+|-+.|..+|++....++.+|
T Consensus 81 ~~e~~~l~~~l~~~e~~l~~~l 102 (359)
T PRK00591 81 KEELKELEERLEELEEELKILL 102 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
No 499
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=30.94 E-value=2.5e+02 Score=23.97 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005993 578 EKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR 625 (666)
Q Consensus 578 ~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~ 625 (666)
+.+.++|.+=..-+..++.+|+++..+..++..+-+.|..=..|=|.|
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 500
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=30.86 E-value=4.1e+02 Score=24.11 Aligned_cols=87 Identities=22% Similarity=0.357 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHH--------------------------------------
Q 005993 568 QENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN-------------------------------------- 609 (666)
Q Consensus 568 ~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~-------------------------------------- 609 (666)
++.......|...-..++..+........+++.+...|+.+.
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~v 81 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEE
Q ss_pred -HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993 610 -KEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 610 -keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~ 654 (666)
+--+..++.+.+..+.-+.+-+.|.+.++.....|+.|...|..+
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!