Query 005993
Match_columns 666
No_of_seqs 178 out of 274
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 13:07:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y4s_A Chaperone protein HTPG; 98.9 1.5E-08 5.3E-13 113.1 15.2 62 26-88 72-145 (559)
2 2o1u_A Endoplasmin; GRP94, HSP 98.8 7.2E-08 2.5E-12 109.7 17.2 62 26-88 90-166 (666)
3 2ioq_A Chaperone protein HTPG; 98.7 1.9E-08 6.5E-13 113.6 8.9 62 26-88 72-145 (624)
4 2ior_A Chaperone protein HTPG; 98.5 3.1E-08 1.1E-12 99.1 3.2 62 26-88 92-165 (235)
5 1yc1_A HSP 86, heat shock prot 98.5 5.7E-08 1.9E-12 99.3 4.1 62 26-88 113-184 (264)
6 3peh_A Endoplasmin homolog; st 98.5 7.7E-08 2.6E-12 99.5 4.2 62 26-88 91-163 (281)
7 2wer_A ATP-dependent molecular 98.4 9.2E-08 3.1E-12 94.5 4.3 62 26-88 71-142 (220)
8 3nmq_A Heat shock protein HSP 98.4 6.5E-08 2.2E-12 97.9 2.1 62 26-88 84-155 (239)
9 3ied_A Heat shock protein; HSP 98.4 1.6E-07 5.4E-12 96.5 4.1 70 16-86 118-198 (272)
10 3o0i_A HSP90AA1 protein; HSP90 98.4 9E-08 3.1E-12 97.8 2.1 62 26-88 105-176 (256)
11 3t0h_A Heat shock protein HSP 98.4 1.6E-07 5.3E-12 94.3 3.5 62 26-88 77-148 (228)
12 2gqp_A Endoplasmin; GRP94, HSP 98.4 1.6E-07 5.4E-12 94.2 3.5 62 26-88 77-153 (236)
13 1qy5_A Endoplasmin; GRP94, NEC 98.3 1.1E-07 3.8E-12 97.5 2.2 62 26-88 73-149 (269)
14 2cg9_A ATP-dependent molecular 98.2 5.4E-07 1.9E-11 102.7 5.1 62 26-88 71-142 (677)
15 1b63_A MUTL; DNA mismatch repa 97.3 0.00014 4.7E-09 76.1 4.0 61 25-88 51-118 (333)
16 3na3_A DNA mismatch repair pro 96.6 0.00065 2.2E-08 72.1 2.0 71 15-88 46-122 (348)
17 1h7s_A PMS1 protein homolog 2; 96.1 0.001 3.5E-08 70.7 0.5 70 15-88 52-128 (365)
18 3h4l_A DNA mismatch repair pro 96.1 0.001 3.5E-08 71.0 0.4 72 14-88 42-119 (367)
19 1kij_A DNA gyrase subunit B; t 95.9 0.14 4.8E-06 54.8 15.5 59 29-88 65-135 (390)
20 3oja_B Anopheles plasmodium-re 94.0 0.46 1.6E-05 52.0 13.1 25 560-584 455-479 (597)
21 3na7_A HP0958; flagellar bioge 92.5 1.2 3.9E-05 44.9 12.5 93 563-655 92-185 (256)
22 3fv5_A DNA topoisomerase 4 sub 91.6 0.061 2.1E-06 52.7 1.9 78 5-88 30-120 (201)
23 2dfs_A Myosin-5A; myosin-V, in 90.2 1.6 5.5E-05 52.5 12.4 23 326-350 428-451 (1080)
24 3na7_A HP0958; flagellar bioge 90.2 3.7 0.00012 41.2 13.3 21 563-583 62-82 (256)
25 2fxo_A Myosin heavy chain, car 89.7 4.7 0.00016 36.8 12.5 83 563-651 15-99 (129)
26 1i84_S Smooth muscle myosin he 89.5 0.94 3.2E-05 54.7 9.8 23 326-350 455-478 (1184)
27 2v71_A Nuclear distribution pr 89.1 6.4 0.00022 38.7 13.6 74 564-637 27-111 (189)
28 2dfs_A Myosin-5A; myosin-V, in 88.8 1.5 5.2E-05 52.8 10.8 19 227-248 326-344 (1080)
29 3u59_A Tropomyosin beta chain; 88.1 9.8 0.00034 33.3 13.0 89 563-655 11-99 (101)
30 1ei1_A DNA gyrase B, GYRB; ATP 88.1 0.21 7.3E-06 53.6 2.7 78 5-88 47-137 (391)
31 1l8d_A DNA double-strand break 87.9 7.1 0.00024 34.1 12.0 64 589-652 24-102 (112)
32 3o0z_A RHO-associated protein 87.3 9.2 0.00031 37.0 13.2 84 575-658 30-134 (168)
33 1i84_S Smooth muscle myosin he 87.2 2 6.8E-05 51.9 10.6 11 300-310 464-474 (1184)
34 1mu5_A Type II DNA topoisomera 87.2 0.4 1.4E-05 52.6 4.2 63 26-88 69-136 (471)
35 2btz_A Pyruvate dehydrogenase 87.1 0.28 9.7E-06 51.2 2.9 70 17-86 260-337 (394)
36 3u1c_A Tropomyosin alpha-1 cha 86.7 13 0.00045 32.6 13.0 89 563-655 11-99 (101)
37 2ocy_A RAB guanine nucleotide 86.6 11 0.00036 36.1 13.1 30 627-656 114-143 (154)
38 2e0a_A Pyruvate dehydrogenase 86.3 0.34 1.2E-05 50.6 3.0 70 17-86 259-337 (394)
39 1ses_A Seryl-tRNA synthetase; 86.2 3 0.0001 45.0 10.3 97 563-662 4-104 (421)
40 2q8g_A [pyruvate dehydrogenase 86.0 0.35 1.2E-05 50.8 2.9 70 17-86 272-350 (407)
41 3d36_A Sporulation kinase B; G 85.9 0.25 8.7E-06 46.2 1.6 66 16-86 144-212 (244)
42 2jee_A YIIU; FTSZ, septum, coi 85.8 11 0.00037 32.6 11.4 74 575-652 6-79 (81)
43 2c2a_A Sensor histidine kinase 85.7 0.2 6.9E-06 48.1 0.8 63 24-86 170-235 (258)
44 1s16_A Topoisomerase IV subuni 85.6 0.42 1.5E-05 51.2 3.4 71 12-88 52-134 (390)
45 1c1g_A Tropomyosin; contractIl 85.4 15 0.00052 34.2 13.7 18 566-583 11-28 (284)
46 3sl2_A Sensor histidine kinase 85.1 0.17 5.9E-06 46.0 0.0 71 16-86 66-139 (177)
47 2eqb_B RAB guanine nucleotide 85.0 11 0.00036 33.6 11.3 49 562-610 13-61 (97)
48 3oja_A Leucine-rich immune mol 84.7 3 0.0001 44.7 9.5 30 621-650 449-478 (487)
49 3oja_A Leucine-rich immune mol 84.7 4.7 0.00016 43.2 10.9 56 599-654 420-475 (487)
50 2zbk_B Type 2 DNA topoisomeras 84.5 0.5 1.7E-05 52.7 3.4 63 26-88 68-135 (530)
51 2v4h_A NF-kappa-B essential mo 84.3 11 0.00037 34.3 11.2 37 569-605 25-61 (110)
52 3a7p_A Autophagy protein 16; c 83.6 3.1 0.00011 39.7 7.8 59 562-620 69-134 (152)
53 3oja_B Anopheles plasmodium-re 83.6 8 0.00027 42.1 12.3 98 560-657 462-580 (597)
54 1y8o_A [pyruvate dehydrogenase 83.4 0.41 1.4E-05 50.6 2.0 63 24-86 290-361 (419)
55 3a0y_A Sensor protein; ATP-LID 83.1 0.18 6.2E-06 44.0 -0.7 64 16-85 68-135 (152)
56 3tnu_A Keratin, type I cytoske 82.7 11 0.00038 34.4 11.0 80 563-649 33-112 (131)
57 1id0_A PHOQ histidine kinase; 82.7 0.46 1.6E-05 41.6 1.7 66 17-86 64-132 (152)
58 3tnu_B Keratin, type II cytosk 82.2 14 0.00047 33.6 11.4 80 563-649 31-110 (129)
59 2oto_A M protein; helical coil 81.6 22 0.00075 33.1 12.9 44 565-608 26-83 (155)
60 1i58_A Chemotaxis protein CHEA 80.9 0.29 1E-05 44.9 -0.2 70 16-86 80-176 (189)
61 2dq0_A Seryl-tRNA synthetase; 80.1 9.5 0.00032 41.7 11.2 98 563-662 4-109 (455)
62 1ysr_A Sensor-type histidine k 79.8 0.76 2.6E-05 40.3 2.1 68 16-86 66-136 (150)
63 3hnw_A Uncharacterized protein 79.0 9.4 0.00032 35.5 9.3 62 590-655 69-130 (138)
64 1b3q_A Protein (chemotaxis pro 78.2 1.2 4E-05 46.7 3.3 69 17-86 140-235 (379)
65 1wle_A Seryl-tRNA synthetase; 78.1 12 0.00041 41.5 11.4 99 563-662 43-156 (501)
66 2i1j_A Moesin; FERM, coiled-co 77.8 2 7E-05 48.2 5.2 40 613-652 418-457 (575)
67 1gkz_A [3-methyl-2-oxobutanoat 77.3 0.48 1.6E-05 49.3 0.0 70 17-86 268-360 (388)
68 4ew8_A Sensor protein DIVL; si 77.2 0.86 3E-05 43.6 1.8 65 16-86 176-243 (268)
69 2q2e_B Type 2 DNA topoisomeras 77.0 0.83 2.8E-05 52.0 1.8 73 16-88 61-140 (621)
70 1bxd_A ENVZ(290-450), protein 77.0 0.54 1.8E-05 41.9 0.2 60 25-86 75-137 (161)
71 2fxo_A Myosin heavy chain, car 75.3 18 0.0006 33.0 9.9 46 565-610 38-90 (129)
72 3jz3_A Sensor protein QSEC; he 75.3 0.9 3.1E-05 41.8 1.3 55 30-87 148-205 (222)
73 1r62_A Nitrogen regulation pro 75.0 0.82 2.8E-05 39.9 0.9 54 27-86 91-147 (160)
74 3qne_A Seryl-tRNA synthetase, 74.4 18 0.00063 40.0 11.5 98 563-662 4-111 (485)
75 3vkg_A Dynein heavy chain, cyt 74.0 11 0.00036 50.5 10.9 16 629-644 2064-2079(3245)
76 3a0r_A Sensor protein; four he 73.7 0.53 1.8E-05 46.6 -0.8 64 16-85 265-332 (349)
77 3ehg_A Sensor kinase (YOCF pro 73.6 0.5 1.7E-05 40.9 -0.8 54 15-86 59-115 (128)
78 3mov_A Lamin-B1; LMNB1, B-type 73.6 8.8 0.0003 33.7 7.1 71 562-636 13-87 (95)
79 2zqm_A Prefoldin beta subunit 73.3 41 0.0014 29.1 11.4 83 573-655 11-111 (117)
80 3ehh_A Sensor kinase (YOCF pro 72.6 0.91 3.1E-05 42.1 0.6 55 14-86 148-205 (218)
81 3cvf_A Homer-3, homer protein 72.1 6.7 0.00023 33.7 5.8 41 566-613 4-44 (79)
82 4duh_A DNA gyrase subunit B; s 71.7 1.2 4.1E-05 44.3 1.3 71 12-88 56-138 (220)
83 2v71_A Nuclear distribution pr 70.7 76 0.0026 31.2 13.7 22 563-584 12-33 (189)
84 2dq3_A Seryl-tRNA synthetase; 70.7 12 0.0004 40.5 8.8 98 563-662 4-108 (425)
85 4etp_A Kinesin-like protein KA 70.5 5.5 0.00019 42.8 6.2 51 592-653 13-63 (403)
86 1m1j_B Fibrinogen beta chain; 70.4 52 0.0018 36.4 13.8 40 566-605 98-137 (464)
87 3cvf_A Homer-3, homer protein 70.3 7.8 0.00027 33.3 5.8 41 563-603 15-55 (79)
88 3cve_A Homer protein homolog 1 69.7 8.5 0.00029 32.5 5.8 25 589-613 14-38 (72)
89 3u59_A Tropomyosin beta chain; 69.4 39 0.0013 29.4 10.3 71 563-637 25-95 (101)
90 1x8y_A Lamin A/C; structural p 68.7 12 0.0004 32.1 6.7 72 563-638 5-80 (86)
91 4emv_A DNA topoisomerase IV, B 68.6 1.9 6.5E-05 43.1 1.9 72 11-88 60-142 (226)
92 3s84_A Apolipoprotein A-IV; fo 68.2 12 0.00042 38.2 7.9 83 564-649 161-259 (273)
93 1th8_A Anti-sigma F factor; SP 67.6 2.4 8.1E-05 37.3 2.1 63 16-85 63-125 (145)
94 3brv_B NF-kappa-B essential mo 67.5 10 0.00036 31.8 5.8 21 560-581 8-28 (70)
95 1gk4_A Vimentin; intermediate 67.1 22 0.00074 30.2 8.0 71 563-637 3-77 (84)
96 3qh9_A Liprin-beta-2; coiled-c 66.7 20 0.00069 30.9 7.5 54 563-616 21-74 (81)
97 2w6b_A RHO guanine nucleotide 66.6 24 0.00082 28.4 7.4 37 602-638 16-52 (56)
98 2ocy_A RAB guanine nucleotide 65.4 27 0.00094 33.3 9.1 21 562-582 21-41 (154)
99 3s4r_A Vimentin; alpha-helix, 63.7 40 0.0014 29.3 9.1 49 589-643 23-71 (93)
100 3lss_A Seryl-tRNA synthetase; 62.9 47 0.0016 36.7 11.7 99 563-662 10-144 (484)
101 3hnw_A Uncharacterized protein 62.9 43 0.0015 31.1 9.8 48 568-615 68-115 (138)
102 2v66_B Nuclear distribution pr 62.0 89 0.003 28.3 11.3 19 563-581 12-30 (111)
103 2p22_C Protein SRN2; endosome, 61.3 31 0.001 33.8 8.9 85 571-655 82-171 (192)
104 1cii_A Colicin IA; bacteriocin 61.1 89 0.003 34.8 13.1 81 571-651 352-441 (602)
105 3vkg_A Dynein heavy chain, cyt 61.1 30 0.001 46.5 11.1 21 624-644 2052-2072(3245)
106 3iv1_A Tumor susceptibility ge 60.9 58 0.002 27.9 9.3 63 572-641 11-73 (78)
107 3u1c_A Tropomyosin alpha-1 cha 60.8 71 0.0024 28.0 10.3 47 564-610 26-72 (101)
108 4fla_A Regulation of nuclear P 60.7 44 0.0015 31.6 9.5 63 573-639 80-142 (152)
109 3u06_A Protein claret segregat 60.3 11 0.00038 40.7 6.1 22 629-653 42-63 (412)
110 1ic2_A Tropomyosin alpha chain 60.2 42 0.0015 28.1 8.5 45 563-607 8-52 (81)
111 3jsv_C NF-kappa-B essential mo 60.1 36 0.0012 30.1 8.1 57 571-627 5-64 (94)
112 2q6q_A Spindle POLE BODY compo 59.8 21 0.00071 30.1 6.2 37 575-611 20-60 (74)
113 2j1d_G DAAM1, disheveled-assoc 59.7 27 0.00091 38.2 9.0 23 563-585 294-316 (483)
114 4dnd_A Syntaxin-10, SYN10; str 58.4 25 0.00087 32.3 7.3 58 585-643 69-127 (130)
115 1ic2_A Tropomyosin alpha chain 57.6 84 0.0029 26.3 10.8 31 573-603 4-34 (81)
116 3ryc_E Stathmin-4; alpha-tubul 56.8 99 0.0034 29.2 11.0 62 589-652 57-122 (143)
117 3s84_A Apolipoprotein A-IV; fo 56.7 1.2E+02 0.0042 30.8 12.8 22 564-585 18-39 (273)
118 3i00_A HIP-I, huntingtin-inter 56.6 35 0.0012 31.2 7.8 45 560-604 14-62 (120)
119 2e7s_A RAB guanine nucleotide 55.8 10 0.00036 35.5 4.2 29 627-655 102-130 (135)
120 1d7m_A Cortexillin I; coiled-c 55.8 1E+02 0.0035 27.2 10.2 62 573-645 2-63 (101)
121 3cwv_A DNA gyrase, B subunit, 55.5 6.3 0.00022 41.9 3.1 44 328-371 298-346 (369)
122 3q0x_A Centriole protein; cent 54.7 29 0.00099 35.0 7.6 51 560-610 163-213 (228)
123 3etw_A Adhesin A; antiparallel 54.6 32 0.0011 31.6 7.1 9 575-583 19-27 (119)
124 3qfl_A MLA10; coiled-coil, (CC 54.0 61 0.0021 28.6 8.9 65 583-652 13-79 (115)
125 1m1j_B Fibrinogen beta chain; 54.0 1.1E+02 0.0038 33.8 12.6 13 563-575 102-114 (464)
126 3cve_A Homer protein homolog 1 53.8 86 0.003 26.4 9.1 39 563-601 9-47 (72)
127 1zxm_A TOPO IIA ATPase, DNA to 53.4 4.5 0.00015 43.6 1.6 70 12-86 74-155 (400)
128 1f5n_A Interferon-induced guan 53.4 52 0.0018 37.2 10.2 17 634-650 566-582 (592)
129 3brv_B NF-kappa-B essential mo 52.9 53 0.0018 27.6 7.5 47 565-611 23-69 (70)
130 3ghg_A Fibrinogen alpha chain; 52.0 1.2E+02 0.0042 34.0 12.5 96 568-664 57-168 (562)
131 3ghg_A Fibrinogen alpha chain; 51.2 62 0.0021 36.4 10.0 24 632-655 114-137 (562)
132 2w6a_A ARF GTPase-activating p 51.0 52 0.0018 27.0 7.0 48 568-615 13-60 (63)
133 3thf_A Protein shroom; coiled- 50.8 41 0.0014 33.1 7.7 50 571-620 83-139 (190)
134 3m9b_A Proteasome-associated A 50.6 16 0.00053 37.5 4.9 27 589-615 68-94 (251)
135 3zxo_A Redox sensor histidine 50.5 3 0.0001 35.4 -0.3 51 15-87 62-115 (129)
136 3tnu_B Keratin, type II cytosk 49.8 47 0.0016 30.0 7.6 52 567-618 56-111 (129)
137 2wvr_A Geminin; DNA replicatio 48.8 25 0.00085 35.0 5.8 48 563-610 110-160 (209)
138 1m1j_C Fibrinogen gamma chain; 48.5 1.5E+02 0.0051 32.2 12.4 31 626-656 103-133 (409)
139 3r2p_A Apolipoprotein A-I; amp 47.5 1.8E+02 0.0063 27.4 11.7 77 562-638 72-165 (185)
140 3he5_A Synzip1; heterodimeric 47.4 52 0.0018 25.2 6.1 13 627-639 37-49 (49)
141 3s4r_A Vimentin; alpha-helix, 46.9 1.2E+02 0.0043 26.2 9.4 49 563-614 25-74 (93)
142 2w6b_A RHO guanine nucleotide 46.6 35 0.0012 27.5 5.3 48 554-601 3-50 (56)
143 2no2_A HIP-I, huntingtin-inter 46.6 1.6E+02 0.0054 26.2 11.6 29 619-647 73-101 (107)
144 2jee_A YIIU; FTSZ, septum, coi 46.5 78 0.0027 27.3 7.9 54 562-615 7-60 (81)
145 2e7s_A RAB guanine nucleotide 45.9 75 0.0026 29.7 8.3 21 562-582 9-29 (135)
146 3m91_A Proteasome-associated A 45.8 58 0.002 25.7 6.4 27 589-615 23-49 (51)
147 3lay_A Zinc resistance-associa 45.6 33 0.0011 33.2 6.1 28 561-588 78-105 (175)
148 3u06_A Protein claret segregat 45.4 44 0.0015 36.1 7.7 50 565-621 7-56 (412)
149 3ol1_A Vimentin; structural ge 45.2 1.1E+02 0.0037 27.5 9.1 27 628-654 69-102 (119)
150 3nmd_A CGMP dependent protein 45.0 48 0.0017 28.0 6.2 40 571-610 22-61 (72)
151 3o0z_A RHO-associated protein 44.2 2.3E+02 0.0078 27.4 11.7 79 577-655 15-103 (168)
152 4f61_I Stathmin-like domain R4 44.0 1.1E+02 0.0036 31.2 9.7 51 599-652 147-201 (240)
153 2q12_A DIP13 alpha, DCC-intera 43.9 2.4E+02 0.0083 27.6 12.5 112 549-660 9-156 (265)
154 1uix_A RHO-associated kinase; 43.6 1.3E+02 0.0043 25.4 8.5 25 563-587 6-30 (71)
155 3ryc_E Stathmin-4; alpha-tubul 42.4 1.1E+02 0.0036 29.0 8.8 42 599-640 79-124 (143)
156 1go4_E MAD1 (mitotic arrest de 42.2 31 0.0011 30.8 4.9 27 560-586 18-44 (100)
157 3ttz_A DNA gyrase subunit B; p 41.7 7.4 0.00025 37.9 0.9 26 12-42 52-77 (198)
158 3lnu_A Topoisomerase IV subuni 40.5 7.6 0.00026 42.1 0.9 71 12-88 71-153 (408)
159 2avr_X Adhesion A; antiparalle 40.2 73 0.0025 29.3 7.1 8 576-583 20-27 (119)
160 3ljm_A Coil Ser L9C; de novo d 39.9 23 0.00079 24.9 2.9 21 589-609 8-28 (31)
161 3zxq_A Hypoxia sensor histidin 39.9 5.6 0.00019 33.6 -0.2 27 16-43 59-85 (124)
162 3a7p_A Autophagy protein 16; c 39.3 2.6E+02 0.0087 26.7 10.9 41 576-616 69-109 (152)
163 2eqb_B RAB guanine nucleotide 39.0 2.1E+02 0.0071 25.4 12.3 51 568-618 5-62 (97)
164 4etp_A Kinesin-like protein KA 38.0 77 0.0026 34.0 8.1 52 563-621 5-56 (403)
165 1b63_A MUTL; DNA mismatch repa 37.4 39 0.0013 35.0 5.6 72 289-364 239-331 (333)
166 3qwe_A GMIP, GEM-interacting p 37.0 74 0.0025 32.9 7.5 20 625-644 174-193 (279)
167 4ew8_A Sensor protein DIVL; si 36.8 61 0.0021 30.5 6.5 18 563-580 19-36 (268)
168 1joc_A EEA1, early endosomal a 36.4 80 0.0027 28.5 6.9 32 568-606 4-35 (125)
169 1uii_A Geminin; human, DNA rep 36.3 42 0.0014 29.1 4.6 16 568-583 46-61 (83)
170 2i1j_A Moesin; FERM, coiled-co 36.3 17 0.00057 40.9 2.8 41 610-650 359-399 (575)
171 4h8s_A DCC-interacting protein 35.9 4E+02 0.014 27.7 14.6 124 538-661 18-180 (407)
172 3s9g_A Protein hexim1; cyclin 35.6 1.2E+02 0.0041 27.2 7.5 52 565-616 34-85 (104)
173 4aj5_A SKA1, spindle and kinet 35.5 20 0.00068 31.6 2.5 38 556-593 32-69 (91)
174 3ol1_A Vimentin; structural ge 35.4 1.4E+02 0.0047 26.8 8.2 23 585-607 58-80 (119)
175 3obv_E Protein diaphanous homo 35.2 2.8E+02 0.0095 30.1 12.1 15 642-656 428-442 (457)
176 3nmd_A CGMP dependent protein 34.7 1.1E+02 0.0037 25.9 6.8 27 611-637 37-63 (72)
177 1k1f_A Breakpoint cluster regi 34.1 45 0.0016 27.9 4.3 30 581-616 28-57 (72)
178 1j1d_B Troponin T, TNT; THIN f 33.9 2E+02 0.0067 25.8 8.8 54 602-662 44-97 (106)
179 1wlq_A Geminin; coiled-coil; 2 32.3 69 0.0024 27.8 5.3 38 568-605 38-78 (83)
180 1wt6_A Myotonin-protein kinase 32.2 1.6E+02 0.0056 25.4 7.6 12 628-639 59-70 (81)
181 2k48_A Nucleoprotein; viral pr 31.9 2.9E+02 0.0098 24.9 9.6 58 592-649 45-103 (107)
182 3bas_A Myosin heavy chain, str 31.6 2.2E+02 0.0075 24.3 8.5 41 563-604 16-57 (89)
183 1ci6_A Transcription factor AT 31.5 2E+02 0.0068 23.1 7.7 49 572-621 14-62 (63)
184 3tnu_A Keratin, type I cytoske 31.4 2.6E+02 0.0089 25.2 9.5 43 596-638 45-87 (131)
185 1f5n_A Interferon-induced guan 31.1 1.9E+02 0.0063 32.7 10.1 41 26-68 8-50 (592)
186 1u2m_A Histone-like protein HL 30.7 31 0.0011 31.1 3.1 23 564-586 26-48 (143)
187 1lwu_C Fibrinogen gamma chain; 30.6 96 0.0033 32.6 7.2 38 571-608 8-45 (323)
188 4dk0_A Putative MACA; alpha-ha 30.5 1.6E+02 0.0056 29.7 8.9 18 596-613 84-101 (369)
189 2fcw_A Alpha-2-macroglobulin r 30.4 2.1E+02 0.0072 25.9 8.3 75 568-652 24-98 (109)
190 1j1d_C Troponin I, TNI; THIN f 30.3 2E+02 0.0069 26.7 8.5 68 589-663 41-115 (133)
191 1pvg_A DNA topoisomerase II; G 30.1 15 0.00052 39.8 1.1 68 13-85 87-166 (418)
192 3swk_A Vimentin; cytoskeleton, 29.9 1.6E+02 0.0055 25.1 7.3 24 629-652 50-73 (86)
193 4emc_A Monopolin complex subun 29.6 1.8E+02 0.0061 28.7 8.3 18 636-653 66-83 (190)
194 2yy0_A C-MYC-binding protein; 29.1 40 0.0014 26.7 3.1 21 562-582 20-40 (53)
195 3l4f_A RHO guanine nucleotide 29.1 2.2E+02 0.0077 23.3 7.5 41 598-638 9-49 (61)
196 2q13_A DCC-interacting protein 29.0 4.7E+02 0.016 26.9 12.2 110 551-660 11-156 (385)
197 3ghg_C Fibrinogen gamma chain; 28.8 3.8E+02 0.013 29.1 11.6 31 627-657 104-134 (411)
198 2wuj_A Septum site-determining 28.7 21 0.00072 28.4 1.4 23 561-583 34-56 (57)
199 1wt6_A Myotonin-protein kinase 28.6 98 0.0034 26.7 5.6 18 591-608 40-57 (81)
200 4dci_A Uncharacterized protein 28.4 3.2E+02 0.011 25.8 9.7 26 613-638 76-101 (150)
201 3fpp_A Macrolide-specific effl 28.1 2.5E+02 0.0086 28.1 9.7 23 595-617 82-104 (341)
202 1x79_B RAB GTPase binding effe 28.0 2.3E+02 0.0078 25.7 8.2 13 633-645 64-76 (112)
203 1s1c_X RHO-associated, coiled- 27.9 2.7E+02 0.0093 23.4 8.2 59 563-627 8-70 (71)
204 3mtu_E Head morphogenesis prot 27.9 1.2E+02 0.0041 25.9 6.0 45 562-609 31-75 (77)
205 1s94_A S-syntaxin; three helix 27.5 3E+02 0.01 25.6 9.5 30 622-652 121-150 (180)
206 4ani_A Protein GRPE; chaperone 27.4 2.1E+02 0.0072 28.4 8.6 87 560-651 65-156 (213)
207 3kqg_A Langerin, C-type lectin 27.3 62 0.0021 29.5 4.6 29 582-610 9-37 (182)
208 3iyn_Q Protein IX, PIX, hexon- 26.9 39 0.0013 31.4 3.0 34 582-615 98-131 (140)
209 3bas_A Myosin heavy chain, str 26.7 3E+02 0.01 23.4 11.0 45 567-611 13-57 (89)
210 2qag_B Septin-6, protein NEDD5 26.7 14 0.00047 40.2 0.0 65 570-634 328-397 (427)
211 1fxk_C Protein (prefoldin); ar 26.6 87 0.003 27.9 5.4 51 554-604 81-131 (133)
212 1lrz_A FEMA, factor essential 26.2 1.5E+02 0.0052 31.2 8.0 19 597-615 248-266 (426)
213 1j1e_C Troponin I, TNI; THIN f 25.9 1.9E+02 0.0066 28.2 7.9 68 589-663 41-115 (180)
214 2v66_B Nuclear distribution pr 25.7 1.6E+02 0.0053 26.7 6.7 21 633-653 68-88 (111)
215 1lwu_C Fibrinogen gamma chain; 25.6 1.2E+02 0.004 32.0 6.8 46 563-608 7-52 (323)
216 2ke4_A CDC42-interacting prote 25.5 1.8E+02 0.0062 25.5 7.0 30 592-621 58-87 (98)
217 4dzo_A Mitotic spindle assembl 25.4 68 0.0023 29.2 4.4 26 596-621 4-29 (123)
218 1gqe_A Release factor 2, RF2; 25.3 5.7E+02 0.019 27.4 12.0 24 638-661 97-120 (365)
219 1gs9_A Apolipoprotein E, APOE4 25.2 1.9E+02 0.0066 27.3 7.7 6 572-577 59-64 (165)
220 3mq9_A Bone marrow stromal ant 24.9 6.2E+02 0.021 26.5 13.3 89 567-655 372-463 (471)
221 1fxk_A Prefoldin; archaeal pro 24.9 3.1E+02 0.011 23.1 12.3 38 615-652 66-103 (107)
222 2ve7_A Kinetochore protein HEC 24.9 92 0.0031 32.3 5.8 54 568-623 167-232 (315)
223 1lrz_A FEMA, factor essential 24.8 1.2E+02 0.0041 32.0 6.9 50 561-611 247-296 (426)
224 2yy0_A C-MYC-binding protein; 24.7 77 0.0026 25.0 4.0 27 627-653 25-51 (53)
225 2j5u_A MREC protein; bacterial 24.3 43 0.0015 33.7 3.1 21 563-583 21-41 (255)
226 2efr_A General control protein 24.0 4.7E+02 0.016 24.8 13.6 92 563-654 44-138 (155)
227 3htk_A Structural maintenance 24.0 2.5E+02 0.0086 21.7 8.3 22 631-652 36-57 (60)
228 4akg_A Glutathione S-transfera 23.8 57 0.0019 43.2 4.8 70 563-638 1852-1921(2695)
229 2b9c_A Striated-muscle alpha t 23.8 4.5E+02 0.015 24.5 13.2 68 589-656 52-122 (147)
230 1deq_A Fibrinogen (alpha chain 23.3 5.8E+02 0.02 27.6 11.6 22 630-651 136-157 (390)
231 3lbx_A Spectrin alpha chain, e 23.2 4.3E+02 0.015 24.1 11.6 33 585-617 91-123 (161)
232 3ajw_A Flagellar FLIJ protein; 23.0 3.9E+02 0.013 23.5 10.7 38 559-596 10-47 (150)
233 1hjb_A Ccaat/enhancer binding 22.8 3.2E+02 0.011 23.5 7.9 33 589-621 43-75 (87)
234 2fic_A Bridging integrator 1; 22.5 5.2E+02 0.018 24.8 13.4 61 563-623 136-213 (251)
235 4e61_A Protein BIM1; EB1-like 22.4 1.9E+02 0.0065 26.0 6.5 13 589-601 46-58 (106)
236 2lw1_A ABC transporter ATP-bin 22.4 1.4E+02 0.0048 25.2 5.6 17 592-608 59-75 (89)
237 4dk0_A Putative MACA; alpha-ha 22.2 1E+02 0.0036 31.2 5.6 31 552-582 61-91 (369)
238 1h2v_C 80 kDa nuclear CAP bind 21.9 47 0.0016 38.7 3.2 67 563-629 633-712 (771)
239 1u00_A HSC66, chaperone protei 21.8 5.5E+02 0.019 24.8 10.8 19 589-607 143-161 (227)
240 2b5u_A Colicin E3; high resolu 21.8 5.8E+02 0.02 28.6 11.4 29 599-627 317-345 (551)
241 3mq7_A Bone marrow stromal ant 21.5 2E+02 0.0069 26.4 6.6 43 573-615 58-104 (121)
242 2ic9_A Nucleocapsid protein; h 21.5 4.3E+02 0.015 23.4 9.3 58 592-649 15-73 (96)
243 2xnx_M M protein, M1-BC1; cell 21.3 5.3E+02 0.018 24.4 9.6 16 601-616 41-56 (146)
244 3nr7_A DNA-binding protein H-N 21.2 2.8E+02 0.0096 23.9 7.2 12 597-608 28-39 (86)
245 2b5u_A Colicin E3; high resolu 21.2 6.4E+02 0.022 28.3 11.6 76 564-646 298-374 (551)
246 1kd8_B GABH BLL, GCN4 acid bas 21.1 1.6E+02 0.0054 21.9 4.7 28 592-619 4-31 (36)
247 3m91_A Proteasome-associated A 20.7 1.6E+02 0.0056 23.2 5.1 37 563-599 11-47 (51)
248 1ytz_T Troponin T; muscle, THI 20.5 1.9E+02 0.0064 25.9 6.2 52 604-662 46-97 (107)
249 3f1i_S STAM-1, signal transduc 20.4 3.4E+02 0.012 23.1 7.4 45 604-648 31-75 (77)
250 2zxx_A Geminin; coiled-coil, c 20.4 1.5E+02 0.0052 25.4 5.2 17 568-584 34-50 (79)
251 2ic6_A Nucleocapsid protein; h 20.3 4.1E+02 0.014 22.7 9.0 58 592-649 15-73 (78)
252 3a6m_A Protein GRPE, HSP-70 co 20.2 3.2E+02 0.011 26.2 8.1 87 562-651 27-114 (177)
253 1deq_A Fibrinogen (alpha chain 20.1 7.2E+02 0.025 26.9 11.5 19 637-655 136-154 (390)
254 3gp4_A Transcriptional regulat 20.1 4.4E+02 0.015 23.8 8.8 24 592-615 84-107 (142)
No 1
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=98.88 E-value=1.5e-08 Score=113.13 Aligned_cols=62 Identities=27% Similarity=0.474 Sum_probs=50.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC-----------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS-----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~-----------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
+...|.|.|||.||+.+++..++ ++|.|.+. .....||+||.||.| ++.+|..|.|.||+.+
T Consensus 72 ~~~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS-~f~VadkV~V~Sr~~~ 145 (559)
T 1y4s_A 72 DKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYS-AFIVADKVTVRTRAAG 145 (559)
T ss_dssp TTTEEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGG-HHHHEEEEEEEEECSS
T ss_pred CCcEEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhh-hhhccCeEEEEEcCCC
Confidence 34699999999999999998887 67777532 123579999999997 5668999999999864
No 2
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=98.80 E-value=7.2e-08 Score=109.65 Aligned_cols=62 Identities=26% Similarity=0.417 Sum_probs=40.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC--------------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS--------------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~--------------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
+...|.|.|||.||+.+++..+| +.|.|.+. .....||+||.||.++ +.+|..|.|.||+.+
T Consensus 90 ~~~~I~I~DnGiGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySa-f~vAdkV~V~Sr~~~ 166 (666)
T 2o1u_A 90 EKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSA-FLVADKVIVTSKHNN 166 (666)
T ss_dssp TTTEEEEEECSCCCCHHHHHHHTTC-------------------------------CTTGGG-GGTEEEEEEEEECTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhH-HHhcCEEEEEEeeCC
Confidence 44789999999999999999888 55555221 1234799999999987 889999999999764
No 3
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=98.71 E-value=1.9e-08 Score=113.65 Aligned_cols=62 Identities=27% Similarity=0.474 Sum_probs=48.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC-----------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS-----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~-----------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
+...|.|.|||.||+.+++..++ ++|.|.+. .....||+||.||.| ++.+|..|.|.||+.+
T Consensus 72 ~~~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS-~f~VadkV~V~Sr~~~ 145 (624)
T 2ioq_A 72 DKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYS-AFIVADKVTVRTRAAG 145 (624)
T ss_dssp TTTEEEEEECSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHH-HHHHEEEEEEEEECTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHH-HHhcCCeEEEEECCCC
Confidence 44799999999999999998877 67777531 123579999999997 5568999999999864
No 4
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=98.52 E-value=3.1e-08 Score=99.14 Aligned_cols=62 Identities=27% Similarity=0.477 Sum_probs=51.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC-----------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS-----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~-----------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
+...|.|.|||.||+++++..++ ++|.|.+. .....+|+||.||+++ +.+|..|.|.||..+
T Consensus 92 ~~~~i~I~DnG~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~-~~~~~~v~V~Sr~~~ 165 (235)
T 2ior_A 92 DKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSA-FIVADKVTVRTRAAG 165 (235)
T ss_dssp TTTEEEEEECSSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGG-GGTEEEEEEEEECTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHH-HhCcCeEEEEEecCC
Confidence 44579999999999999998766 78887542 1135799999999976 889999999999864
No 5
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=98.48 E-value=5.7e-08 Score=99.31 Aligned_cols=62 Identities=21% Similarity=0.367 Sum_probs=51.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC---------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~---------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
+...|.|.|||.||++++|..++ ++|.|.+. .....||+||.||+++.| +|..|.|.||+.+
T Consensus 113 ~~~~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~ 184 (264)
T 1yc1_A 113 QDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHND 184 (264)
T ss_dssp TTTEEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHH-HEEEEEEEEECTT
T ss_pred CeeEEEEEECCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCcccccc-CCCEEEEEEecCC
Confidence 56789999999999999997776 68877542 124589999999998765 9999999999754
No 6
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=98.45 E-value=7.7e-08 Score=99.47 Aligned_cols=62 Identities=24% Similarity=0.404 Sum_probs=49.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC----------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~----------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
+...|.|.|||.||++++|..+| +.|.|... .....|||||.||+|+ |.+|..|.|.||+.+
T Consensus 91 ~~~tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySa-f~vadkV~V~Sk~~~ 163 (281)
T 3peh_A 91 EKNILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSA-FLVADKVIVYTKNND 163 (281)
T ss_dssp TTTEEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGG-GGTEEEEEEEEECTT
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhh-ccccCEEEEEEecCC
Confidence 34689999999999999999877 55555321 2346899999999998 569999999999754
No 7
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=98.44 E-value=9.2e-08 Score=94.46 Aligned_cols=62 Identities=23% Similarity=0.347 Sum_probs=51.1
Q ss_pred CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC---------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~---------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
+...|.|.|||.||+++++..++ .+|+|.+. .....||+||.||+++ +.+|..|.|.||+.+
T Consensus 71 ~~~~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~-~~~~~~v~v~S~~~~ 142 (220)
T 2wer_A 71 EQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSND 142 (220)
T ss_dssp GGTEEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHh-hhcCCeeEEEEecCC
Confidence 56789999999999999998777 68876421 1345799999999876 789999999999754
No 8
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=98.40 E-value=6.5e-08 Score=97.95 Aligned_cols=62 Identities=21% Similarity=0.378 Sum_probs=49.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC---------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~---------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
+...|.|.|||.||+++++.++| +.|+|.+. .....|||||.||+|+ +.+|..|.|.||+.+
T Consensus 84 ~~~~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySa-f~vadkv~V~Sk~~~ 155 (239)
T 3nmq_A 84 QERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSA-YLVAEKVVVITKHND 155 (239)
T ss_dssp TTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTT
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccc-cccCCEEEEEEeeCC
Confidence 46789999999999999997765 45544321 1346899999999997 778999999999753
No 9
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=98.37 E-value=1.6e-07 Score=96.48 Aligned_cols=70 Identities=24% Similarity=0.386 Sum_probs=52.4
Q ss_pred hcccCCCCCCCcceEEEEECCCCCCHHHHHHHH-hcCCCCCC----------CccccccccCCcccccccccCCeEEEEe
Q 005993 16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCM-SLGYSAKS----------KAANTIGQYGNGFKTSTMRLGADVIVFS 84 (666)
Q Consensus 16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~----------~~~~~IGrYGnGfKTgSMRLGkdviVfS 84 (666)
.++|....=.....|.|.|||.||+.++|.++| ..++|... .....|||||.||+|+ |.+|..|.|.|
T Consensus 118 ~l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySa-FmVAdkV~V~S 196 (272)
T 3ied_A 118 KLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSS-FLVSNRVEVYT 196 (272)
T ss_dssp GCCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGG-GGTEEEEEEEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceehee-eccCCEEEEEE
Confidence 445544111245689999999999999999987 56555321 2246799999999996 67999999999
Q ss_pred ee
Q 005993 85 CC 86 (666)
Q Consensus 85 K~ 86 (666)
|.
T Consensus 197 k~ 198 (272)
T 3ied_A 197 KK 198 (272)
T ss_dssp ES
T ss_pred cC
Confidence 93
No 10
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=98.36 E-value=9e-08 Score=97.75 Aligned_cols=62 Identities=21% Similarity=0.367 Sum_probs=50.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC---------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~---------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
+...|.|.|||.||++++|..++ +.+.|... .....||+||.||+|+.| +|..|.|.||+.+
T Consensus 105 ~~~~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~-Vadkv~V~Sr~~~ 176 (256)
T 3o0i_A 105 QDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHND 176 (256)
T ss_dssp TTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTT
T ss_pred CceEEEEecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhc-cCCeEEEEEcCCC
Confidence 67799999999999999998776 55554331 134689999999999855 9999999999753
No 11
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=98.35 E-value=1.6e-07 Score=94.29 Aligned_cols=62 Identities=21% Similarity=0.340 Sum_probs=50.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC---------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~---------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
+...|.|.|||.||+++++..++ ++|.|.+. .....||+||.||+|+. .+|..|.|.||+.+
T Consensus 77 ~~~~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~-~vad~v~V~Sr~~~ 148 (228)
T 3t0h_A 77 QDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAY-LVAEKVTVITKHND 148 (228)
T ss_dssp TTTEEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGG-GTEEEEEEEEECTT
T ss_pred CeeEEEEEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHh-ccCCEEEEEEecCC
Confidence 67799999999999999998777 56665431 12468999999999985 59999999999754
No 12
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=98.35 E-value=1.6e-07 Score=94.24 Aligned_cols=62 Identities=26% Similarity=0.414 Sum_probs=47.0
Q ss_pred CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC--------------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS--------------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~--------------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
+...|.|.|||.||++++|..++ ++|+|.+. .....||+||.||++ .+.+|..|.|.||..+
T Consensus 77 ~~~~i~I~DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S-~f~va~~v~V~Sr~~~ 153 (236)
T 2gqp_A 77 EKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYS-AFLVADKVIVTSKHNN 153 (236)
T ss_dssp TTTEEEEEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGG-GGGTEEEEEEEEECTT
T ss_pred CCCEEEEEECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhh-HhhcCCEEEEEEeCCC
Confidence 45689999999999999998777 67777431 123479999999997 5788999999999754
No 13
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=98.34 E-value=1.1e-07 Score=97.49 Aligned_cols=62 Identities=26% Similarity=0.417 Sum_probs=50.4
Q ss_pred CcceEEEEECCCCCCHHHHHHHH-hcCCCCCC--------------CccccccccCCcccccccccCCeEEEEeeecC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAKS--------------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~--------------~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
+...|.|.|||.||++++|..++ ++|+|... .....||+||.||.++ +.+|..|.|+||..+
T Consensus 73 ~~~~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySa-f~va~~v~V~Sk~~~ 149 (269)
T 1qy5_A 73 EKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSA-FLVADKVIVTSKHNN 149 (269)
T ss_dssp TTTEEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGG-GGTEEEEEEEEECTT
T ss_pred CceEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHH-hhccceEEEEEEecC
Confidence 56789999999999999998777 67776321 1235799999999987 668999999999764
No 14
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=98.25 E-value=5.4e-07 Score=102.69 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=50.9
Q ss_pred CcceEEEEECCCCCCHHHHHHHH-hcCCCCC------C---CccccccccCCcccccccccCCeEEEEeeecC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCM-SLGYSAK------S---KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k------~---~~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
+...|.|.|||.||+.+++..+| +.|+|.. . .+...|||||.||.++ +.++..|.|.||+.+
T Consensus 71 ~~~~I~I~DnGiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySa-f~vadkV~V~Sk~~~ 142 (677)
T 2cg9_A 71 EQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSND 142 (677)
T ss_dssp GGTEEEEEECSCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGG-GGTEEEEEEEEECTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHH-hhcCcEEEEEEccCC
Confidence 44689999999999999999988 5666632 1 1235799999999977 889999999999865
No 15
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=97.26 E-value=0.00014 Score=76.10 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=46.3
Q ss_pred CCcceEEEEECCCCCCHHHHHHHH-hcCCCCCCCc------cccccccCCcccccccccCCeEEEEeeecC
Q 005993 25 WSFHCICFADNGGGMNPDKMRHCM-SLGYSAKSKA------ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 25 ~G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~~~------~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
.|...|.|.|||.||+++++..++ +|+.+ |... ...+|.+|.||.+. ..++ .+.|.||..+
T Consensus 51 ~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts-K~~~~~d~~~~~~~G~~G~gl~si-~~vs-~l~v~s~~~~ 118 (333)
T 1b63_A 51 GGAKLIRIRDNGCGIKKDELALALARHATS-KIASLDDLEAIISLGFRGEALASI-SSVS-RLTLTSRTAE 118 (333)
T ss_dssp GGTSEEEEEECSCCCCGGGHHHHHSTTCCS-SCCSHHHHHTCCSSCCSSCHHHHH-HTTS-EEEEEEECTT
T ss_pred CCceEEEEEEcCCCcCHHHHHHhhhccccc-CccccchhhhccccCccccchhhh-hcCC-cEEEEEecCC
Confidence 455789999999999999999998 56655 3221 13689999999654 2344 8999999865
No 16
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=96.57 E-value=0.00065 Score=72.10 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=48.5
Q ss_pred hhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCc------cccccccCCcccccccccCCeEEEEeeecC
Q 005993 15 LQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKA------ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 15 ~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~------~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
.++.|... ..|...|.|.|||.||+++++..+..-+++.|... -...|..|.||-+.+ .++ .+.|.||..+
T Consensus 46 ~~I~I~i~-~~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~-avs-~l~v~sr~~~ 122 (348)
T 3na3_A 46 TSIQVIVK-EGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASIS-HVA-HVTITTKTAD 122 (348)
T ss_dssp SEEEEEEE-GGGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CCTTCHHHHHH-HSS-EEEEEEECTT
T ss_pred CEEEEEEE-eCCEEEEEEEECCcCcChHHhhhhhccccccccCcchhhhccccCCcCChHHHHhh-ccc-EEEEEEEECC
Confidence 34444432 34556799999999999999998886555555422 135799999995443 455 7999999875
No 17
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=96.14 E-value=0.001 Score=70.71 Aligned_cols=70 Identities=21% Similarity=0.333 Sum_probs=43.6
Q ss_pred hhcccCCCCCCCcceEEEEECCCCCCHHHHHHHH-hcCCCCCCCc---c---ccccccCCcccccccccCCeEEEEeeec
Q 005993 15 LQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCM-SLGYSAKSKA---A---NTIGQYGNGFKTSTMRLGADVIVFSCCC 87 (666)
Q Consensus 15 ~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~m-sfG~s~k~~~---~---~~IGrYGnGfKTgSMRLGkdviVfSK~~ 87 (666)
..+.|.+.+ .|...|.|.|||.||+++++..+. .|..+ |... . ..+|.+|.||-+.+ .++ .+.|.||..
T Consensus 52 ~~I~I~i~~-~~~~~I~V~DnG~Gi~~~~l~~~f~~~~ts-K~~~~~dl~~i~s~G~rG~gl~si~-~vs-~v~v~t~~~ 127 (365)
T 1h7s_A 52 TNIDLKLKD-YGVDLIEVSDNGCGVEEENFEGLTLKHHTS-KIQEFADLTQVETFGFRGEALSSLC-ALS-DVTISTCHA 127 (365)
T ss_dssp SEEEEEEEG-GGTSEEEEEECSCCCCGGGSGGGGC-----------CCTTCSEEESSSSSHHHHHH-HHS-EEEEEEECT
T ss_pred CEEEEEEEe-CCcEEEEEEECCCCcCHHHHHHHhhhcccc-ccccccchhcccccCCCCchhhhhh-hhc-cEEEEEccC
Confidence 334444422 356689999999999999998876 45444 3221 1 23677788875443 355 999999986
Q ss_pred C
Q 005993 88 G 88 (666)
Q Consensus 88 g 88 (666)
+
T Consensus 128 ~ 128 (365)
T 1h7s_A 128 S 128 (365)
T ss_dssp T
T ss_pred C
Confidence 5
No 18
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.001 Score=70.98 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=47.1
Q ss_pred chhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCcc------ccccccCCcccccccccCCeEEEEeeec
Q 005993 14 MLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAA------NTIGQYGNGFKTSTMRLGADVIVFSCCC 87 (666)
Q Consensus 14 a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~------~~IGrYGnGfKTgSMRLGkdviVfSK~~ 87 (666)
|.++.|.+. -.|...|.|.|||.||+++++..+..-+++.|.... ...|..|.||-+. ..++ .+.|.||+.
T Consensus 42 a~~I~I~i~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si-~avS-~l~V~sr~~ 118 (367)
T 3h4l_A 42 ANQIEIIFK-DYGLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSL-CGIA-KLSVITTTS 118 (367)
T ss_dssp CSEEEEEEE-TTTTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEEETTHHHHHH-HHSS-EEEEEEESS
T ss_pred CCEEEEEEE-eCCEEEEEEEECCCCcChhHhccceeccccCcCCchhhhhhhhccCccchHHHHh-hccC-EEEEEEEEC
Confidence 334444442 246679999999999999999888754444443221 3467788998544 4455 699999976
Q ss_pred C
Q 005993 88 G 88 (666)
Q Consensus 88 g 88 (666)
+
T Consensus 119 ~ 119 (367)
T 3h4l_A 119 P 119 (367)
T ss_dssp T
T ss_pred C
Confidence 4
No 19
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=95.89 E-value=0.14 Score=54.82 Aligned_cols=59 Identities=24% Similarity=0.207 Sum_probs=39.6
Q ss_pred eEEEEECCCCCCHHHHHH--------HHh-cCCCCCCC---ccccccccCCcccccccccCCeEEEEeeecC
Q 005993 29 CICFADNGGGMNPDKMRH--------CMS-LGYSAKSK---AANTIGQYGNGFKTSTMRLGADVIVFSCCCG 88 (666)
Q Consensus 29 ~L~I~DDG~GMd~~el~~--------~ms-fG~s~k~~---~~~~IGrYGnGfKTgSMRLGkdviVfSK~~g 88 (666)
.|.|.|||.||+++++.. ++. |-...+.. .....|..|.||.... .+...+.|-|+.+|
T Consensus 65 ~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~-als~~~~v~t~~~g 135 (390)
T 1kij_A 65 SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVN-ALSEWTVVEVFREG 135 (390)
T ss_dssp CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHH-HTEEEEEEEEEETT
T ss_pred EEEEEEcCCCCCHHHhhhccccchhhheeeeeecccccCccccccCCCCCcceeeec-ccccceEEEEecCC
Confidence 899999999999988643 331 21111211 1235789999998653 56677888888654
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.96 E-value=0.46 Score=51.95 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=17.5
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGEL 584 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~ 584 (666)
+..+.+++.+...|++++...|+.+
T Consensus 455 ~~e~~~~~~~i~~l~~~~~~~~~~l 479 (597)
T 3oja_B 455 EAEVNELRAEVQQLTNEQIQQEQLL 479 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446777777777787777777665
No 21
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.52 E-value=1.2 Score=44.87 Aligned_cols=93 Identities=15% Similarity=0.194 Sum_probs=56.6
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 642 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~ 642 (666)
+..|..|...++.|+...|+.+..-+++...+++++++++.+++++..+-+.+..-+.++...-+.|.+.|+.+-++...
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~ 171 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVE 171 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666666666666666666666666666666666666666666666666665655555556666666666666665
Q ss_pred HH-HHHHHHHhhhh
Q 005993 643 TI-QDLLDKIKLLE 655 (666)
Q Consensus 643 ~i-~~~~~~~~~~~ 655 (666)
.| .+||..-..+.
T Consensus 172 ~i~~~lL~~Yerir 185 (256)
T 3na7_A 172 KTEPKIYSFYERIR 185 (256)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 55 35555444444
No 22
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=91.65 E-value=0.061 Score=52.66 Aligned_cols=78 Identities=22% Similarity=0.179 Sum_probs=39.3
Q ss_pred ccccccc-ccchhcccCCCCCCCcceEEEEECCCCCCHHHH--------HHHH-hcCCCCCCCc---cccccccCCcccc
Q 005993 5 VDGLFSN-SKMLQLCSNLPSLWSFHCICFADNGGGMNPDKM--------RHCM-SLGYSAKSKA---ANTIGQYGNGFKT 71 (666)
Q Consensus 5 ~~~~~~~-a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el--------~~~m-sfG~s~k~~~---~~~IGrYGnGfKT 71 (666)
+|+..+. |+.+.+.|+- .| .+.|.|||.||+.+++ .-++ ..-.+.|... ....|..|.|+++
T Consensus 30 iDa~~~g~a~~I~V~i~~---~g--~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~~~~~~s~GfrGeglss 104 (201)
T 3fv5_A 30 VDEALAGHAKRVDVILHA---DQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 104 (201)
T ss_dssp HHHHHTTCCSEEEEEECT---TS--CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC---------------------CHH
T ss_pred HHHHhcCCCcEEEEEEeC---CC--EEEEEECCCCcCcccccccCcchhheeeeeeccccCcCCCcccccCcccceecch
Confidence 3454443 6666666652 23 7999999999999872 2222 1111222211 2368999999986
Q ss_pred cccccCCeEEEEeeecC
Q 005993 72 STMRLGADVIVFSCCCG 88 (666)
Q Consensus 72 gSMRLGkdviVfSK~~g 88 (666)
.. .+...+.|-|+.++
T Consensus 105 in-alS~~l~v~t~~~g 120 (201)
T 3fv5_A 105 VN-ALSKRVEVNVRRDG 120 (201)
T ss_dssp HH-HTEEEEEEEEEETT
T ss_pred hh-cccceEEEEEEecC
Confidence 54 46678899898765
No 23
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.16 E-value=1.6 Score=52.51 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=13.7
Q ss_pred CCcceeEEEeccccc-ccccccccch
Q 005993 326 DGRGVIGVLEANFVE-PAHDKQGFER 350 (666)
Q Consensus 326 ~GrGVIGVvEanfle-PtHNKQdFe~ 350 (666)
.....|||||+.-+| ..+| .||.
T Consensus 428 ~~~~~IgvLDI~GFE~f~~N--sFEQ 451 (1080)
T 2dfs_A 428 KQHSFIGVLDIYGFETFEIN--SFEQ 451 (1080)
T ss_dssp CCCEEEEEEEECCCCCCSSB--CHHH
T ss_pred ccCceEEeeccCCccccCcC--CHHH
Confidence 346789999995333 3333 5653
No 24
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=90.16 E-value=3.7 Score=41.22 Aligned_cols=21 Identities=5% Similarity=0.158 Sum_probs=10.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHh
Q 005993 563 LGQLKQENHELKKRLEKKEGE 583 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~ 583 (666)
+++++.+..+++.|+.+.+..
T Consensus 62 ~~~~e~~i~~~~~ri~~~~~~ 82 (256)
T 3na7_A 62 VSKNEQTLQDTNAKIASIQKK 82 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555554443
No 25
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=89.69 E-value=4.7 Score=36.77 Aligned_cols=83 Identities=30% Similarity=0.416 Sum_probs=43.2
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEER-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER-DRREREEENLRKKIKDA 640 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~-~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer-~~~~~e~~~lr~kl~~~ 640 (666)
++.+.++...|++.|.+.+.. +.|+ +++..|..+..+++.+|+ .|++.|-|+ ||| +|-...+..|..+|+++
T Consensus 15 ~~~~~eel~~lke~l~k~e~~-r~ele~~~~~l~~Ek~~L~~qL~---~E~~~l~e~--EE~~~~L~~~k~eLe~~l~el 88 (129)
T 2fxo_A 15 MASMKEEFTRLKEALEKSEAR-RKELEEKMVSLLQEKNDLQLQVQ---AEQDNLADA--EERCDQLIKNKIQLEAKVKEM 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhH--HHHHHHHHHHHHHHHHHHHHH
Confidence 556666667777777654433 3333 556666666666665544 355555554 333 22233334455555555
Q ss_pred HHHHHHHHHHH
Q 005993 641 SDTIQDLLDKI 651 (666)
Q Consensus 641 ~~~i~~~~~~~ 651 (666)
..-+.+.-++.
T Consensus 89 ~~rleeeee~~ 99 (129)
T 2fxo_A 89 NKRLEDEEEMN 99 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55554443333
No 26
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=89.45 E-value=0.94 Score=54.68 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=13.6
Q ss_pred CCcceeEEEeccccc-ccccccccch
Q 005993 326 DGRGVIGVLEANFVE-PAHDKQGFER 350 (666)
Q Consensus 326 ~GrGVIGVvEanfle-PtHNKQdFe~ 350 (666)
.....|||||+.-+| ..+| .||.
T Consensus 455 ~~~~~IgvLDi~GFE~f~~N--sfeQ 478 (1184)
T 1i84_S 455 QGASFLGILDIAGFEIFEIN--SFEQ 478 (1184)
T ss_dssp --CEEEEEEECCCCCCCSSB--CHHH
T ss_pred CCcceEEEeecCCcCCCCcc--hHHH
Confidence 346799999995433 3333 5653
No 27
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=89.10 E-value=6.4 Score=38.71 Aligned_cols=74 Identities=14% Similarity=0.266 Sum_probs=39.7
Q ss_pred hhhhhhhhHHHHHHHHhHHhHHHHH-----------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005993 564 GQLKQENHELKKRLEKKEGELQEER-----------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEEN 632 (666)
Q Consensus 564 ~~~~~e~~~~~~~~~~~~~~~~~e~-----------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~ 632 (666)
.+|+.|..+..+-=..+|.+|..|+ .++..|..+++.++.+++....|-...|..+..|-..--.+.+.
T Consensus 27 ~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~ 106 (189)
T 2v71_A 27 QEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQ 106 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445555544 44455555556666666666666555566665554444445555
Q ss_pred HHHHH
Q 005993 633 LRKKI 637 (666)
Q Consensus 633 lr~kl 637 (666)
|+++|
T Consensus 107 l~~~i 111 (189)
T 2v71_A 107 LHKYV 111 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 28
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.83 E-value=1.5 Score=52.76 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=12.1
Q ss_pred HHHHHHHhhccCCCCeEEEEcC
Q 005993 227 LRSYASILYLRLPPGFRIIIRG 248 (666)
Q Consensus 227 LRaYLSILYLr~pprmrIiLrG 248 (666)
++-=++||.| .++.+.-.|
T Consensus 326 ~~ilaaILhL---Gni~F~~~~ 344 (1080)
T 2dfs_A 326 FRILAGILHL---GNVEFASRD 344 (1080)
T ss_dssp HHHHHHHHHH---TTCCCEEET
T ss_pred HHHHHHHHhc---cCceEEecC
Confidence 5666788888 566555443
No 29
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=88.13 E-value=9.8 Score=33.30 Aligned_cols=89 Identities=25% Similarity=0.419 Sum_probs=62.3
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 642 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~ 642 (666)
|..|+.|....-+|....+..+...-+++..++.++..+++++.-+..+-+.+-+-+.+-.. .-+.-+++..+|-.
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~----kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQE----KLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 66788888888999999999988888888999999999999887666655544443332221 11222455566667
Q ss_pred HHHHHHHHHhhhh
Q 005993 643 TIQDLLDKIKLLE 655 (666)
Q Consensus 643 ~i~~~~~~~~~~~ 655 (666)
.+..|--+|..+|
T Consensus 87 evasLnRriqllE 99 (101)
T 3u59_A 87 EVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 7777777776665
No 30
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=88.11 E-value=0.21 Score=53.59 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=49.2
Q ss_pred ccccccc-ccchhcccCCCCCCCcceEEEEECCCCCCHHH--------HHHHHh-cCCCCCCCc---cccccccCCcccc
Q 005993 5 VDGLFSN-SKMLQLCSNLPSLWSFHCICFADNGGGMNPDK--------MRHCMS-LGYSAKSKA---ANTIGQYGNGFKT 71 (666)
Q Consensus 5 ~~~~~~~-a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~e--------l~~~ms-fG~s~k~~~---~~~IGrYGnGfKT 71 (666)
+|...+. |+.+.+.|+. .| .|.|.|||.||+.+. +.-+|. +-...|... .-..|..|.|+++
T Consensus 47 iDea~~g~a~~I~V~i~~---~g--~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~ 121 (391)
T 1ei1_A 47 IDEALAGHCKEIIVTIHA---DN--SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 121 (391)
T ss_dssp HHHHHTTCCCEEEEEECT---TS--CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHH
T ss_pred HHHHhcCCCCEEEEEEeC---CC--EEEEEECCCCcccCcccccCcchHHHhheeccccCCcCCCcccccCCccccchHH
Confidence 3444444 6666777664 23 899999999999876 333442 222222211 2378999999985
Q ss_pred cccccCCeEEEEeeecC
Q 005993 72 STMRLGADVIVFSCCCG 88 (666)
Q Consensus 72 gSMRLGkdviVfSK~~g 88 (666)
.. .|...+.|-++.+|
T Consensus 122 vn-alS~~l~v~~~r~g 137 (391)
T 1ei1_A 122 VN-ALSQKLELVIQREG 137 (391)
T ss_dssp HH-HTEEEEEEEEEETT
T ss_pred HH-HhcCeEEEEEEeCC
Confidence 53 45567788888654
No 31
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=87.88 E-value=7.1 Score=34.07 Aligned_cols=64 Identities=19% Similarity=0.318 Sum_probs=45.8
Q ss_pred HhhhcHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 589 ERCRSLEAQLKVMQQTIEELNK---------------EQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~k---------------eq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
.....++.+++++++.++++++ ....+|+-+..+...-..+-+.|+.++.+....|+.|-.+++
T Consensus 24 ~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 24 QRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455577788888888887765 224567777777777777777777777777777777777776
No 32
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=87.33 E-value=9.2 Score=37.03 Aligned_cols=84 Identities=21% Similarity=0.329 Sum_probs=53.3
Q ss_pred HHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------------HHHHHH
Q 005993 575 KRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE-----------------REEENL 633 (666)
Q Consensus 575 ~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~-----------------~e~~~l 633 (666)
.||.|...+++.-. .+|+-|...+.-++..-..+.++-..|=-.+.+||.-|- .|-+.+
T Consensus 30 ~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~ 109 (168)
T 3o0z_A 30 VRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHL 109 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666654333 444444445544555555555555555566666664443 345677
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcC
Q 005993 634 RKKIKDASDTIQDLLDKIKLLEKMK 658 (666)
Q Consensus 634 r~kl~~~~~~i~~~~~~~~~~~~~~ 658 (666)
+.++..+...-+.|-|+|..+||-|
T Consensus 110 k~~~~k~~~e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 110 KHNLEKVEGERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888899999999999854
No 33
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=87.23 E-value=2 Score=51.88 Aligned_cols=11 Identities=36% Similarity=0.981 Sum_probs=6.9
Q ss_pred cccceeEEecC
Q 005993 300 DVQGFNVYHKN 310 (666)
Q Consensus 300 ~~qGf~VYhkN 310 (666)
++.||-++..|
T Consensus 464 Di~GFE~f~~N 474 (1184)
T 1i84_S 464 DIAGFEIFEIN 474 (1184)
T ss_dssp ECCCCCCCSSB
T ss_pred ecCCcCCCCcc
Confidence 55677666655
No 34
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=87.19 E-value=0.4 Score=52.60 Aligned_cols=63 Identities=22% Similarity=0.340 Sum_probs=44.3
Q ss_pred CcceEEEEECCCCCCHHHHHHHHh-cCCCCCCCccccccccCCccccccc---ccCCe-EEEEeeecC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCMS-LGYSAKSKAANTIGQYGNGFKTSTM---RLGAD-VIVFSCCCG 88 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~ms-fG~s~k~~~~~~IGrYGnGfKTgSM---RLGkd-viVfSK~~g 88 (666)
+...|.|.|||.||+++++..++. |....+.......|..|.||-.+.. ..|-. +.|-|+..+
T Consensus 69 ~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~ 136 (471)
T 1mu5_A 69 QIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVN 136 (471)
T ss_dssp TEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTT
T ss_pred cEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCC
Confidence 456899999999999999998874 4444443223467889999975432 33444 999998653
No 35
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=87.06 E-value=0.28 Score=51.17 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=44.4
Q ss_pred cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCC-----ccccccccCCcccc---cccccCCeEEEEeee
Q 005993 17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSK-----AANTIGQYGNGFKT---STMRLGADVIVFSCC 86 (666)
Q Consensus 17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~-----~~~~IGrYGnGfKT---gSMRLGkdviVfSK~ 86 (666)
+.|....-.+.-.|.|.|+|.||+++++.++....++.+.. .....+-+|.||-. -.=.+|-++.|-|..
T Consensus 260 I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2btz_A 260 IKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSME 337 (394)
T ss_dssp EEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------CCHHHHHHHHHHHTTCEEEEEEET
T ss_pred EEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCCCCCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 33333233456689999999999999999999877665532 12345678999853 334568888888874
No 36
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.71 E-value=13 Score=32.65 Aligned_cols=89 Identities=17% Similarity=0.314 Sum_probs=60.5
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 642 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~ 642 (666)
|..|+.|.....+|....+..+...-+++..++.++..+++++.-+..+-+.+-+-+.+-...-+. -.+++.+|-.
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee----~ek~~~~aE~ 86 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF----AEENAAKAES 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 677888888889999999999888888899999999999888876655555444444332222111 1334455666
Q ss_pred HHHHHHHHHhhhh
Q 005993 643 TIQDLLDKIKLLE 655 (666)
Q Consensus 643 ~i~~~~~~~~~~~ 655 (666)
.+..|--+|..+|
T Consensus 87 ev~~L~RriqllE 99 (101)
T 3u1c_A 87 EVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 6666666666654
No 37
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.61 E-value=11 Score=36.09 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 627 EREEENLRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 627 ~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
+...+.|++.|+|+-..|..|=++|..|..
T Consensus 114 e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 114 EILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445577999999999888888888887653
No 38
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=86.27 E-value=0.34 Score=50.64 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=48.9
Q ss_pred cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCC------ccccccccCCccc---ccccccCCeEEEEeee
Q 005993 17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSK------AANTIGQYGNGFK---TSTMRLGADVIVFSCC 86 (666)
Q Consensus 17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~------~~~~IGrYGnGfK---TgSMRLGkdviVfSK~ 86 (666)
+.|....-.+.-.|.|.|+|.||+++++.++....++.+.. .....+-+|.||- .-.=..|-++.|-|..
T Consensus 259 I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2e0a_A 259 IEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLS 337 (394)
T ss_dssp EEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred EEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCcccCHHHHHHHHHHhCCEEEEEecC
Confidence 33333234456689999999999999999999877765532 2234577899985 3334568888888874
No 39
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=86.16 E-value=3 Score=45.03 Aligned_cols=97 Identities=16% Similarity=0.311 Sum_probs=54.2
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA----EERDRREREEENLRKKIK 638 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~----eer~~~~~e~~~lr~kl~ 638 (666)
|+.+++.-..+++.|.++-.++. .++-..|.++...++.++++++.++-++=.... |++..--.|...|+++|+
T Consensus 4 ~~~~r~~~~~~~~~~~~r~~~~~--~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~ 81 (421)
T 1ses_A 4 LKRLRQEPEVFHRAIREKGVALD--LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAK 81 (421)
T ss_dssp HHHHHHCHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHhCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 66777766777888887755431 455555555555555555555555555444443 333333344555555565
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCc
Q 005993 639 DASDTIQDLLDKIKLLEKMKTPSI 662 (666)
Q Consensus 639 ~~~~~i~~~~~~~~~~~~~~~~~~ 662 (666)
+.-....++-+++..+- +..||.
T Consensus 82 ~~~~~~~~~~~~~~~~~-~~ipN~ 104 (421)
T 1ses_A 82 RLEEALREKEARLEALL-LQVPLP 104 (421)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCCCC
T ss_pred HHHHHHHHHHHHHHHHH-HhCCCC
Confidence 55555555555555433 556654
No 40
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=86.03 E-value=0.35 Score=50.76 Aligned_cols=70 Identities=17% Similarity=0.261 Sum_probs=48.5
Q ss_pred cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCC------ccccccccCCcccc---cccccCCeEEEEeee
Q 005993 17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSK------AANTIGQYGNGFKT---STMRLGADVIVFSCC 86 (666)
Q Consensus 17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~------~~~~IGrYGnGfKT---gSMRLGkdviVfSK~ 86 (666)
+.|....-.+.-.|.|.|+|.||+++++.++....++.+.. .....+-+|.||-. -.=..|-++.|-|..
T Consensus 272 I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~ 350 (407)
T 2q8g_A 272 IQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLE 350 (407)
T ss_dssp EEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEET
T ss_pred EEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcC
Confidence 33333334456789999999999999999999877665432 12345778999853 334567888888774
No 41
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=85.90 E-value=0.25 Score=46.23 Aligned_cols=66 Identities=17% Similarity=0.123 Sum_probs=44.5
Q ss_pred hcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccc---cccCCeEEEEeee
Q 005993 16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTST---MRLGADVIVFSCC 86 (666)
Q Consensus 16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgS---MRLGkdviVfSK~ 86 (666)
.+.|....-.+...|.|.|||.||+++.+.++....++.+. .+..|.||..+- -++|-.+.|-+..
T Consensus 144 ~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~-----~~g~GlGL~i~~~i~~~~gG~i~~~~~~ 212 (244)
T 3d36_A 144 TLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYFTTKG-----VKGTGLGMMVVYRIIESMNGTIRIESEI 212 (244)
T ss_dssp EEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTTCCSSG-----GGCCSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred eEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhcccccCCC-----CCCcchhHHHHHHHHHHcCCEEEEEecC
Confidence 34444433456778999999999999999888766555431 244688886432 3467777777663
No 42
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.83 E-value=11 Score=32.60 Aligned_cols=74 Identities=20% Similarity=0.392 Sum_probs=49.9
Q ss_pred HHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 575 KRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 575 ~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
|-|.++|+-++.=.|....|..++++++.+-..++.+.+.+ ...|+..++|-+.|+.-...--.-|+.||.|+.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~----~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA----QHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555666677667777777777777777766666665543 456666677777777777666777778887763
No 43
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=85.68 E-value=0.2 Score=48.09 Aligned_cols=63 Identities=19% Similarity=0.101 Sum_probs=38.9
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccccc---ccccCCeEEEEeee
Q 005993 24 LWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS---TMRLGADVIVFSCC 86 (666)
Q Consensus 24 ~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTg---SMRLGkdviVfSK~ 86 (666)
-.+...|.|.|||.||+++.+.++..-.++.+.......+-.|.||-.+ .=.+|-.+.|-|..
T Consensus 170 ~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~ 235 (258)
T 2c2a_A 170 KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEV 235 (258)
T ss_dssp ETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCeEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecC
Confidence 3455679999999999999998887544443321122334578887532 33467788887764
No 44
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=85.64 E-value=0.42 Score=51.22 Aligned_cols=71 Identities=21% Similarity=0.143 Sum_probs=45.9
Q ss_pred ccchhcccCCCCCCCcceEEEEECCCCCCHHH--------HHHHH-hcCCCCCCC---ccccccccCCcccccccccCCe
Q 005993 12 SKMLQLCSNLPSLWSFHCICFADNGGGMNPDK--------MRHCM-SLGYSAKSK---AANTIGQYGNGFKTSTMRLGAD 79 (666)
Q Consensus 12 a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~e--------l~~~m-sfG~s~k~~---~~~~IGrYGnGfKTgSMRLGkd 79 (666)
|+.+.+.|+. .| .|.|.|||.||+.+. +..+| .+-...|.. -....|..|.|+++. -.|...
T Consensus 52 a~~I~V~i~~---~g--~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~v-nalS~~ 125 (390)
T 1s16_A 52 AKRVDVILHA---DQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV-NALSKR 125 (390)
T ss_dssp CSEEEEEECT---TS--CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHH-HHTEEE
T ss_pred CCEEEEEEec---CC--EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCcccccCCccccchHHH-HHhhcc
Confidence 5556666653 23 799999999999877 45555 222222221 123689999999855 345667
Q ss_pred EEEEeeecC
Q 005993 80 VIVFSCCCG 88 (666)
Q Consensus 80 viVfSK~~g 88 (666)
+.|-|+.+|
T Consensus 126 l~v~~~r~g 134 (390)
T 1s16_A 126 VEVNVRRDG 134 (390)
T ss_dssp EEEEEEETT
T ss_pred cEEEEEECC
Confidence 888888654
No 45
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=85.42 E-value=15 Score=34.24 Aligned_cols=18 Identities=22% Similarity=0.398 Sum_probs=7.2
Q ss_pred hhhhhhHHHHHHHHhHHh
Q 005993 566 LKQENHELKKRLEKKEGE 583 (666)
Q Consensus 566 ~~~e~~~~~~~~~~~~~~ 583 (666)
|+.+...+..++..++..
T Consensus 11 l~~~~~~~~~~~~~l~~~ 28 (284)
T 1c1g_A 11 LKLDKENALDRADEAEAD 28 (284)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 334444444444443333
No 46
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=85.12 E-value=0.17 Score=45.97 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=43.9
Q ss_pred hcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccc---cccCCeEEEEeee
Q 005993 16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTST---MRLGADVIVFSCC 86 (666)
Q Consensus 16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgS---MRLGkdviVfSK~ 86 (666)
.+.+....-.+.-.|.|.|||.||+++.+.++..-.++.........+..|.||..+- -.+|..+.|-+..
T Consensus 66 ~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~~ 139 (177)
T 3sl2_A 66 TFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIE 139 (177)
T ss_dssp EEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHHHHHHHHHcCCEEEEEecC
Confidence 3444323445667899999999999999888876555433222334557788987443 3456667666654
No 47
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.96 E-value=11 Score=33.64 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=35.2
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 610 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~k 610 (666)
-|.+|+.++......+.++.+.|..|+.++...|.+...+++.||+|.-
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666777777788888888888877777777777653
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.75 E-value=3 Score=44.66 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=16.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 621 EERDRREREEENLRKKIKDASDTIQDLLDK 650 (666)
Q Consensus 621 eer~~~~~e~~~lr~kl~~~~~~i~~~~~~ 650 (666)
||.+|-..|-+++-+++.+|-.|.||+..+
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 449 EENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 444444555555555555666666666544
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.67 E-value=4.7 Score=43.21 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005993 599 KVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLL 654 (666)
Q Consensus 599 ~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~ 654 (666)
+++++++|.....++.+.+++++|-+.-.+|.+.|++.+.+.-..|.+-.+++..+
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 420 EEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 34444444444445566677777777777778888888888888887777776654
No 50
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=84.51 E-value=0.5 Score=52.67 Aligned_cols=63 Identities=22% Similarity=0.320 Sum_probs=44.6
Q ss_pred CcceEEEEECCCCCCHHHHHHHHh-cCCCCCCCccccccccCCcccccc---cccCCe-EEEEeeecC
Q 005993 26 SFHCICFADNGGGMNPDKMRHCMS-LGYSAKSKAANTIGQYGNGFKTST---MRLGAD-VIVFSCCCG 88 (666)
Q Consensus 26 G~~~L~I~DDG~GMd~~el~~~ms-fG~s~k~~~~~~IGrYGnGfKTgS---MRLGkd-viVfSK~~g 88 (666)
+...|.|.|||.||+++++..++. |....+.......|..|.||-.+. -..|-+ +.|-|+..+
T Consensus 68 ~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~ 135 (530)
T 2zbk_B 68 QIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVN 135 (530)
T ss_dssp TEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTT
T ss_pred ceEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEecCC
Confidence 455899999999999999998884 434444322346789999997543 233444 889888643
No 51
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=84.31 E-value=11 Score=34.30 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHH
Q 005993 569 ENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTI 605 (666)
Q Consensus 569 e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~ 605 (666)
|...|+.+|.-.|+.|......|..|.+.+...+..+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888776677777776665554433
No 52
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=83.59 E-value=3.1 Score=39.71 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=48.6
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 620 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ 620 (666)
.|..|+.|...|+.|+..+++++...- |-.-+|..|+..++.++..+.+|...||+-+=
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588899999999999999988864322 66778888888899999999999999998764
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.56 E-value=8 Score=42.13 Aligned_cols=98 Identities=18% Similarity=0.160 Sum_probs=45.4
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHh-------hhcHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEERER-------CRSLEAQLKVMQQTIEELNKEQESLIDI-------------- 618 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~-------~~~l~~~~~~~~~~~~~~~keq~~li~~-------------- 618 (666)
++.+.+|++|.....+-+..+++++...++. .....+++++..+++++..++-+.....
T Consensus 462 ~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (597)
T 3oja_B 462 RAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETED 541 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhh
Confidence 4556677766666666666665555433311 1111233333333333322222222222
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 005993 619 FAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKM 657 (666)
Q Consensus 619 f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~ 657 (666)
+-+|+++-++..+.-++++++....++++..+++.++.-
T Consensus 542 ~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 224444444444555555555555555666666666543
No 54
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=83.36 E-value=0.41 Score=50.61 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=41.8
Q ss_pred CCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCC------ccccccccCCcccc---cccccCCeEEEEeee
Q 005993 24 LWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSK------AANTIGQYGNGFKT---STMRLGADVIVFSCC 86 (666)
Q Consensus 24 ~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~------~~~~IGrYGnGfKT---gSMRLGkdviVfSK~ 86 (666)
-.+.-.|.|.|+|.||+++++.++....++.+.. .....+-+|.||-. -.=..|-++.|-|..
T Consensus 290 ~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~ 361 (419)
T 1y8o_A 290 GKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSME 361 (419)
T ss_dssp CSSEEEEEEEECSCCCCHHHHGGGGCTTTC-------------CC--CTTHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecC
Confidence 3456689999999999999999999776665432 12345678999853 333467788888774
No 55
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=83.11 E-value=0.18 Score=43.95 Aligned_cols=64 Identities=9% Similarity=0.098 Sum_probs=42.9
Q ss_pred hcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccc----cccCCeEEEEee
Q 005993 16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTST----MRLGADVIVFSC 85 (666)
Q Consensus 16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgS----MRLGkdviVfSK 85 (666)
.+.|....-.+.-.|.|.|||.||+++++.++..-.++.+ -+..|.||..+- ..+|..+.+-+.
T Consensus 68 ~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~------~~g~GlGL~i~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 68 KIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK------TQGTGLGLSICRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp EEEEEEEECSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC--------CCCCSHHHHHHHHHTTTSCEEEEEEE
T ss_pred EEEEEEEecCCEEEEEEEeCCCCcCHHHHHhHhhhhccCC------CCCCCcCHHHHHHHHHHhCCcEEEEecC
Confidence 3444443345667899999999999999988875554433 235789987553 256777776655
No 56
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.74 E-value=11 Score=34.36 Aligned_cols=80 Identities=24% Similarity=0.236 Sum_probs=48.5
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 642 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~ 642 (666)
+...|.|..+|+..+..++.+++.-+..+.+|+.++.++++..+..-+.-...|.-+ +.|-..+|.-+..-..
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~l-------E~eL~~~r~em~~ql~ 105 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSV-------EEQLAQLRCEMEQQNQ 105 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 777889999999999999999999889999999999999987765433323333332 2333334444444444
Q ss_pred HHHHHHH
Q 005993 643 TIQDLLD 649 (666)
Q Consensus 643 ~i~~~~~ 649 (666)
.-|+||+
T Consensus 106 EYq~Ll~ 112 (131)
T 3tnu_A 106 EYKILLD 112 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555554
No 57
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=82.73 E-value=0.46 Score=41.57 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=43.1
Q ss_pred cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccc---cccCCeEEEEeee
Q 005993 17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTST---MRLGADVIVFSCC 86 (666)
Q Consensus 17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgS---MRLGkdviVfSK~ 86 (666)
++|....-.+.-.|.|.|||.||+++.+.++..-+++.+.. -+..|.||..+. -.+|-++.+-+..
T Consensus 64 i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~----~~g~GlGL~i~~~~~~~~gG~i~~~~~~ 132 (152)
T 1id0_A 64 VEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL----RPGQGVGLAVAREITEQYEGKIVAGESM 132 (152)
T ss_dssp EEEEEEECSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC----CTTCCSCHHHHHHHHHHTTCEEEEEECT
T ss_pred EEEEEEecCCEEEEEEEeCCCCcCHHHHHHHhccceeccCC----CCCcccCHHHHHHHHHHcCCEEEEEeCC
Confidence 33433233456789999999999999998887655544321 245788875332 3457777776654
No 58
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.22 E-value=14 Score=33.60 Aligned_cols=80 Identities=16% Similarity=0.296 Sum_probs=52.5
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 642 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~ 642 (666)
+..-|.|..+|+..+..++.+++.=+..+.+|+.++.++++..+..-+.-...|.-+-+ |-..+|.-+..-..
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~-------eL~~~r~e~~~ql~ 103 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEE-------ALQKAKQDMARLLR 103 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHH
Confidence 66778999999999999999999988999999999999998776543333333333322 22333333333344
Q ss_pred HHHHHHH
Q 005993 643 TIQDLLD 649 (666)
Q Consensus 643 ~i~~~~~ 649 (666)
.-|+||+
T Consensus 104 EYq~Lln 110 (129)
T 3tnu_B 104 EYQELMN 110 (129)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4455554
No 59
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=81.64 E-value=22 Score=33.15 Aligned_cols=44 Identities=32% Similarity=0.465 Sum_probs=26.6
Q ss_pred hhhhhhhHHHHHHHHhHHhH----------H---HHH-HhhhcHHHHHHHHHHHHHHH
Q 005993 565 QLKQENHELKKRLEKKEGEL----------Q---EER-ERCRSLEAQLKVMQQTIEEL 608 (666)
Q Consensus 565 ~~~~e~~~~~~~~~~~~~~~----------~---~e~-~~~~~l~~~~~~~~~~~~~~ 608 (666)
.|+.||..|++.+......+ + +++ ++++.|..++.+++.+...+
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888877776554322 2 122 55667777777776666333
No 60
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=80.87 E-value=0.29 Score=44.91 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=42.9
Q ss_pred hcccCCCCCCCcceEEEEECCCCCCHHHH------------------------HHHHhcCCCCCCCccccccccCCcccc
Q 005993 16 QLCSNLPSLWSFHCICFADNGGGMNPDKM------------------------RHCMSLGYSAKSKAANTIGQYGNGFKT 71 (666)
Q Consensus 16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el------------------------~~~msfG~s~k~~~~~~IGrYGnGfKT 71 (666)
.++|....-.+.-.|.|.|||.||+++++ .+++.-+++.+. .....+..|.||..
T Consensus 80 ~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~-~~~~~~g~GlGL~i 158 (189)
T 1i58_A 80 TLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKE-KVSEVSGRGVGMDV 158 (189)
T ss_dssp EEEEEEEEETTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHH-HHHGGGTCCCHHHH
T ss_pred eEEEEEEecCCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCcccccc-cCCCCCCCccCHHH
Confidence 44444433346678999999999999987 334443444331 11233567899864
Q ss_pred c---ccccCCeEEEEeee
Q 005993 72 S---TMRLGADVIVFSCC 86 (666)
Q Consensus 72 g---SMRLGkdviVfSK~ 86 (666)
+ .-.+|..+.|-+..
T Consensus 159 v~~~~~~~~G~i~i~s~~ 176 (189)
T 1i58_A 159 VKNVVESLNGSISIESEK 176 (189)
T ss_dssp HHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHcCCEEEEEeCC
Confidence 4 33457777777763
No 61
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=80.08 E-value=9.5 Score=41.68 Aligned_cols=98 Identities=16% Similarity=0.241 Sum_probs=56.5
Q ss_pred hhhhhhhhhHHHHHHHHhHH-h---HHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEG-E---LQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLR 634 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~-~---~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr 634 (666)
|+.+++.-..+++.|.++-. + +-.++ ++.|.|..++++++.+.+++.|+--.+... .|++..--.|...|+
T Consensus 4 ~~~~r~n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~-~~~~~~l~~~~~~~~ 82 (455)
T 2dq0_A 4 IKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKK-GEPVDELLAKSREIV 82 (455)
T ss_dssp HHHHHHCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCCTHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccHHHHHHHHHHHH
Confidence 66677666677777877643 2 12222 556666666666666666655553322110 133444445666677
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCc
Q 005993 635 KKIKDASDTIQDLLDKIKLLEKMKTPSI 662 (666)
Q Consensus 635 ~kl~~~~~~i~~~~~~~~~~~~~~~~~~ 662 (666)
++|++.-....++-+++..+- +..||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~ipN~ 109 (455)
T 2dq0_A 83 KRIGELENEVEELKKKIDYYL-WRLPNI 109 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 777777777777767666544 566664
No 62
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=79.77 E-value=0.76 Score=40.25 Aligned_cols=68 Identities=13% Similarity=0.035 Sum_probs=39.4
Q ss_pred hcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccccc---ccccCCeEEEEeee
Q 005993 16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS---TMRLGADVIVFSCC 86 (666)
Q Consensus 16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTg---SMRLGkdviVfSK~ 86 (666)
.+.|....-.+.-.|.|.|||.||+++.+.++..-.++... ..-+..|.||..+ .-.+|-.+.+-+..
T Consensus 66 ~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~---~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~ 136 (150)
T 1ysr_A 66 LVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGST---ASHSGSGLGLALVAQQAQLHGGTASLENSP 136 (150)
T ss_dssp EEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC--------------CCCHHHHHHHHHTTCEEEEEECT
T ss_pred EEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCCC---CCCCCCCcCHHHHHHHHHHcCCEEEEeecC
Confidence 34444433445678999999999999999998854443221 1234578887633 23466777776653
No 63
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=79.01 E-value=9.4 Score=35.54 Aligned_cols=62 Identities=23% Similarity=0.179 Sum_probs=42.9
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005993 590 RCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 590 ~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~ 655 (666)
-.-.+..+.+.++++++++.+|.++|.. |-..-+.+-+++++++++.-..|++|-+++..||
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~----el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKH----ELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556677788888888888888875 3444455666777777777777777777777665
No 64
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=78.17 E-value=1.2 Score=46.74 Aligned_cols=69 Identities=20% Similarity=0.227 Sum_probs=39.8
Q ss_pred cccCCCCCCCcceEEEEECCCCCCHHHHH------------------------HHHhcCCCCCCCccccccccCCccc--
Q 005993 17 LCSNLPSLWSFHCICFADNGGGMNPDKMR------------------------HCMSLGYSAKSKAANTIGQYGNGFK-- 70 (666)
Q Consensus 17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~------------------------~~msfG~s~k~~~~~~IGrYGnGfK-- 70 (666)
+.|....-.+.-.|.|.|||.||+++.+. ....-|++.+.. ....+-.|.||-
T Consensus 140 I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~-~~~~~G~GlGL~iv 218 (379)
T 1b3q_A 140 LILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVV 218 (379)
T ss_dssp EEEEEEEETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC------------CCCSHHH
T ss_pred EEEEEEEeCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCCc-cCCCCCccccHHHH
Confidence 44443333566789999999999999983 344556665532 234566788884
Q ss_pred -ccccccCCeEEEEeee
Q 005993 71 -TSTMRLGADVIVFSCC 86 (666)
Q Consensus 71 -TgSMRLGkdviVfSK~ 86 (666)
.-.=.+|-.+.|-|..
T Consensus 219 ~~~v~~~gG~i~v~s~~ 235 (379)
T 1b3q_A 219 KNVVESLNGSMGIESEK 235 (379)
T ss_dssp HHHHHHTTCEEEEEEET
T ss_pred HHHHHHCCCEEEEEEcC
Confidence 3334567788887774
No 65
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=78.10 E-value=12 Score=41.52 Aligned_cols=99 Identities=14% Similarity=0.205 Sum_probs=53.3
Q ss_pred hhhhhhhhhHHHHHHHHhHHh----HHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhH
Q 005993 563 LGQLKQENHELKKRLEKKEGE----LQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFA-------EERDRRE 627 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~----~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~-------eer~~~~ 627 (666)
|+.+++.-..+++.|.++-.+ +-.++ ++.|.|..++++++.+.+++.|+--.+...=. |++..--
T Consensus 43 ~~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~ 122 (501)
T 1wle_A 43 MESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLR 122 (501)
T ss_dssp HHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHH
Confidence 777776555557888877543 11222 56666666666666666555555333221100 2333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCc
Q 005993 628 REEENLRKKIKDASDTIQDLLDKIKLLEKMKTPSI 662 (666)
Q Consensus 628 ~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~~~~~~ 662 (666)
.|...|+++|++.-....++-+++..+- +..||.
T Consensus 123 ~~~~~l~~~i~~l~~~~~~~~~~l~~~l-~~iPN~ 156 (501)
T 1wle_A 123 ARGREIRKQLTLLYPKEAQLEEQFYLRA-LRLPNQ 156 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 4555566666666556666666665443 556664
No 66
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=77.77 E-value=2 Score=48.18 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 613 ESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 613 ~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
++.|.-..||++||+.|-+.|+.+|..|-....+-.++|.
T Consensus 418 ~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~ 457 (575)
T 2i1j_A 418 QEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALL 457 (575)
T ss_dssp ------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778899999999999999999988887766666654
No 67
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=77.25 E-value=0.48 Score=49.26 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=45.8
Q ss_pred cccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCc--------------------cccccccCCccccc---c
Q 005993 17 LCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKA--------------------ANTIGQYGNGFKTS---T 73 (666)
Q Consensus 17 ~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~--------------------~~~IGrYGnGfKTg---S 73 (666)
+.|....-.+.-.|.|.|+|.||+++.+.++....++.+... ....+-+|.||-.+ .
T Consensus 268 I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~ 347 (388)
T 1gkz_A 268 VVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYA 347 (388)
T ss_dssp EEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CCSCSSCHHHHHHHHH
T ss_pred EEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhcccccccCCCCcCCccCCHHHHHHHH
Confidence 334333344667899999999999999998887766655321 12345688888533 3
Q ss_pred cccCCeEEEEeee
Q 005993 74 MRLGADVIVFSCC 86 (666)
Q Consensus 74 MRLGkdviVfSK~ 86 (666)
=.+|-++.|-|..
T Consensus 348 ~~~gG~i~v~s~~ 360 (388)
T 1gkz_A 348 EYLGGSLQLQSLQ 360 (388)
T ss_dssp HHTTCEEEEEEET
T ss_pred HHhCCEEEEEecC
Confidence 3467777777764
No 68
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=77.24 E-value=0.86 Score=43.56 Aligned_cols=65 Identities=15% Similarity=0.011 Sum_probs=43.4
Q ss_pred hcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccc---cccccCCeEEEEeee
Q 005993 16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT---STMRLGADVIVFSCC 86 (666)
Q Consensus 16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKT---gSMRLGkdviVfSK~ 86 (666)
.+.|....-.+.-.|.|.|||.||+++.+.++..-.++.+ -+..|.||.. -.-++|..+.|-+..
T Consensus 176 ~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~------~~g~GlGL~i~~~~~~~~gG~i~i~s~~ 243 (268)
T 4ew8_A 176 RVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRD------RGGPGLGLALVKALVELHGGWVALESEP 243 (268)
T ss_dssp EEEEEEEECSSEEEEEEEESSCCCCHHHHTTTTSTTCCCS------SCCCTTHHHHHHHHHHHTTCEEEEEECT
T ss_pred EEEEEEEecCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCC------CCCCcccHHHHHHHHHHcCCEEEEEecC
Confidence 3444443345667899999999999999888775554433 2356888753 334567777776664
No 69
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=76.96 E-value=0.83 Score=51.97 Aligned_cols=73 Identities=16% Similarity=0.310 Sum_probs=44.1
Q ss_pred hcccCCCCCC-CcceEEEEECCCCCCHHHHHHHHh-cCCCCCCC-ccccccccCCccccccc---c-cCCeEEEEeeecC
Q 005993 16 QLCSNLPSLW-SFHCICFADNGGGMNPDKMRHCMS-LGYSAKSK-AANTIGQYGNGFKTSTM---R-LGADVIVFSCCCG 88 (666)
Q Consensus 16 n~~i~~~~~~-G~~~L~I~DDG~GMd~~el~~~ms-fG~s~k~~-~~~~IGrYGnGfKTgSM---R-LGkdviVfSK~~g 88 (666)
.+.|.+..-. +...|.|.|||.||+++++..++. |..+.+.. .....|..|.||..+.. . -|..+.|-|+..+
T Consensus 61 ~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~g 140 (621)
T 2q2e_B 61 DILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSP 140 (621)
T ss_dssp EEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSS
T ss_pred EEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCceechhhhhHHHHHhCCCceeEEeeccC
Confidence 3445442222 345799999999999999999873 32223321 12356889999975422 2 2333677787643
No 70
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=76.95 E-value=0.54 Score=41.88 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=40.5
Q ss_pred CCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccc---cccCCeEEEEeee
Q 005993 25 WSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTST---MRLGADVIVFSCC 86 (666)
Q Consensus 25 ~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgS---MRLGkdviVfSK~ 86 (666)
.+.-.|.|.|||.||+++++.++..-.++.+. ...-+..|.||..+- -.+|-.+.+-+..
T Consensus 75 ~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~--~~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~ 137 (161)
T 1bxd_A 75 PNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDS--ARTISGTGLGLAIVQRIVDNHNGMLELGTSE 137 (161)
T ss_dssp TTEEEEEEEEESSCSCTTGGGCSSCCCCCCSC--CCCCCCCSCCCCTTHHHHHHHTSEEEEEEET
T ss_pred CCEEEEEEEeCCCCCCHHHHHHhCCCceeCCC--CCCCCCcccCHHHHHHHHHHcCCEEEEEECC
Confidence 45668999999999999998887755544332 122356788886443 2356777776653
No 71
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=75.35 E-value=18 Score=32.97 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=22.9
Q ss_pred hhhhhhhHHHHHHHHhHHhHHHHHHh-------hhcHHHHHHHHHHHHHHHHH
Q 005993 565 QLKQENHELKKRLEKKEGELQEERER-------CRSLEAQLKVMQQTIEELNK 610 (666)
Q Consensus 565 ~~~~e~~~~~~~~~~~~~~~~~e~~~-------~~~l~~~~~~~~~~~~~~~k 610 (666)
.|...+..|-.-...+...|+.|.+. |..|..+-.+++.+|.+++.
T Consensus 38 ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~ 90 (129)
T 2fxo_A 38 ELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNK 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555556666644 44444444444445544443
No 72
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=75.26 E-value=0.9 Score=41.82 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccc---cccCCeEEEEeeec
Q 005993 30 ICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTST---MRLGADVIVFSCCC 87 (666)
Q Consensus 30 L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgS---MRLGkdviVfSK~~ 87 (666)
|.|.|||.||+++.+.++..-.++.+. ...+..|.||-.+. -.+|-++.|-+...
T Consensus 148 i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~GlGL~i~~~i~~~~gG~i~i~s~~~ 205 (222)
T 3jz3_A 148 FIVRDNGPGVTPEALARIGERFYRPPG---QTATGSGLGLSIVQRIAKLHGMNVEFGNAEQ 205 (222)
T ss_dssp EEEECSCC-----------------------------CTHHHHHHHHHHTTCEEECCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhhhccCCC---CCCCcccccHHHHHHHHHHcCCEEEEEcCCC
Confidence 999999999999999888765444321 22345788876332 34667776666643
No 73
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=74.99 E-value=0.82 Score=39.93 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=24.7
Q ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccc---cccCCeEEEEeee
Q 005993 27 FHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTST---MRLGADVIVFSCC 86 (666)
Q Consensus 27 ~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgS---MRLGkdviVfSK~ 86 (666)
.-.|.|.|||.||+++++.++..-.++.+. +..|.||..+- -++|-.+.|-+..
T Consensus 91 ~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~------~g~GlGL~i~~~~~~~~gG~l~i~s~~ 147 (160)
T 1r62_A 91 AARIDVEDNGPGIPPHLQDTLFYPMVSGRE------GGTGLGLSIARNLIDQHSGKIEFTSWP 147 (160)
T ss_dssp EEEEEEEEECTTC--------------------------CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred EEEEEEEeCCCCCCHHHHHHhhCccccCCC------CCCccCHHHHHHHHHHCCCeEEEEeCC
Confidence 457899999999999999888765554331 34688876433 3467777776653
No 74
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=74.42 E-value=18 Score=40.00 Aligned_cols=98 Identities=14% Similarity=0.161 Sum_probs=53.2
Q ss_pred hhhhhh----hhhHHHHHHHHhHHh--HHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005993 563 LGQLKQ----ENHELKKRLEKKEGE--LQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEEN 632 (666)
Q Consensus 563 ~~~~~~----e~~~~~~~~~~~~~~--~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~ 632 (666)
|+.|++ .-..+++.|.++-.+ +-.++ ++.|.|..++++++.+.+++.|+=-.+.. =.|+.+.--.|...
T Consensus 4 i~~ir~~~~~n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~-~~~~~~~l~~~~~~ 82 (485)
T 3qne_A 4 INAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFK-AKEDAKDLIAEKEK 82 (485)
T ss_dssp GGGGCGGGTCCHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHH
T ss_pred hHHHhccCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHH
Confidence 556666 334567777766432 11222 55666666666666666665554322211 01223333455667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCc
Q 005993 633 LRKKIKDASDTIQDLLDKIKLLEKMKTPSI 662 (666)
Q Consensus 633 lr~kl~~~~~~i~~~~~~~~~~~~~~~~~~ 662 (666)
|+.+|++.-..+.++-+++..+- +..||+
T Consensus 83 l~~~i~~le~~~~~~~~~~~~~l-~~iPN~ 111 (485)
T 3qne_A 83 LSNEKKEIIEKEAEADKNLRSKI-NQVGNI 111 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 77777777766677766666543 555554
No 75
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=73.97 E-value=11 Score=50.53 Aligned_cols=16 Identities=13% Similarity=0.358 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 005993 629 EEENLRKKIKDASDTI 644 (666)
Q Consensus 629 e~~~lr~kl~~~~~~i 644 (666)
|.+...+||.-|..-|
T Consensus 2064 e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A 2064 ESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 76
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=73.70 E-value=0.53 Score=46.56 Aligned_cols=64 Identities=9% Similarity=0.109 Sum_probs=38.9
Q ss_pred hcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccc----cccCCeEEEEee
Q 005993 16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTST----MRLGADVIVFSC 85 (666)
Q Consensus 16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgS----MRLGkdviVfSK 85 (666)
.+.|....-.+.-.|.|.|||.||+++.+.+...-.++.+. +..|.||..+- ..+|..+.|-+.
T Consensus 265 ~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~------~g~GlGL~i~~~~v~~~~gg~i~~~~~ 332 (349)
T 3a0r_A 265 KIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT------QGTGLGLSICRKIIEDEHGGKIWTENR 332 (349)
T ss_dssp CEEEEEEEETTEEEEEEEEESCCCCGGGGTTTSSSCCCC------------CCCTHHHHHHHHTTCSBCCEEEC
T ss_pred EEEEEEEecCCEEEEEEEECCCCCChHHHhhcCCCCccCCC------CCccchHHHHHHHHHHhCCCEEEEEeC
Confidence 44444434456678999999999999998877765554432 23588876432 145666655554
No 77
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=73.65 E-value=0.5 Score=40.94 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=35.3
Q ss_pred hhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccc---cccCCeEEEEeee
Q 005993 15 LQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTST---MRLGADVIVFSCC 86 (666)
Q Consensus 15 ~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgS---MRLGkdviVfSK~ 86 (666)
..+.|.+..-.+.-.|.|.|||.||+++.+ +..|.||.... -.+|-.+.+-+..
T Consensus 59 ~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~------------------~g~GlGL~~~~~~~~~~gG~i~~~s~~ 115 (128)
T 3ehg_A 59 KTCRVDIQQLWKEVVITVSDDGTFKGEENS------------------FSKGHGLLGMRERLEFANGSLHIDTEN 115 (128)
T ss_dssp SEEEEEEEEETTEEEEEEEESSCCCSCSSC------------------CCTTSHHHHHHHHHHHTTCEEEEECSS
T ss_pred cEEEEEEEEeCCEEEEEEEECCcCcCcccC------------------CCCCccHHHHHHHHHHcCCEEEEEeCC
Confidence 345555534456678999999999998765 22477775432 2456677666654
No 78
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=73.56 E-value=8.8 Score=33.71 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=48.1
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKK 636 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~k 636 (666)
-|..|+.+|.+|..+|..+|.....++ ...-.|+.+|..+++.++....|=..|.||- -+-|.|-..-|+=
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvK----l~Le~EIatYrkL 87 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVK----LALDMEISAYRKL 87 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 378888999999999999999877666 4556688888888888887777767777763 2334444444443
No 79
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=73.26 E-value=41 Score=29.13 Aligned_cols=83 Identities=14% Similarity=0.254 Sum_probs=51.4
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHhhhHHHHHHHH
Q 005993 573 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK------------------EQESLIDIFAEERDRREREEENLR 634 (666)
Q Consensus 573 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~k------------------eq~~li~~f~eer~~~~~e~~~lr 634 (666)
+-.++.+....++.=..+...|+.++.++.-.++|+.. ..+..+..+.+..+.-+.+.+.|.
T Consensus 11 ~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le 90 (117)
T 2zqm_A 11 MLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433334555566666666665555543 345566666666677777778888
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 005993 635 KKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 635 ~kl~~~~~~i~~~~~~~~~~~ 655 (666)
++++..-..+.+|-.+|.+.-
T Consensus 91 ~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 91 RQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877777543
No 80
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=72.64 E-value=0.91 Score=42.10 Aligned_cols=55 Identities=13% Similarity=0.104 Sum_probs=30.9
Q ss_pred chhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccc---cccCCeEEEEeee
Q 005993 14 MLQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTST---MRLGADVIVFSCC 86 (666)
Q Consensus 14 a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgS---MRLGkdviVfSK~ 86 (666)
+..+.|.+..-.+.-.|.|.|||.||+++.+ +-.|.||...- =.+|-.+.|-+..
T Consensus 148 ~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~------------------~g~GlGL~~~~~~v~~~gG~i~~~s~~ 205 (218)
T 3ehh_A 148 AKTCRVDIQQLWKEVVITVSDDGTFKGEENS------------------FSKGHGLLGMRERLEFANGSLHIDTEN 205 (218)
T ss_dssp CSEEEEEEEEETTEEEEEEEESSCCCC--------------------------CHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEEEEEeCCEEEEEEEECCcCCCCCCC------------------CCCCCCHHHHHHHHHHcCCEEEEeCCC
Confidence 3445555533456678999999999999876 22477775322 2456677766654
No 81
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=72.06 E-value=6.7 Score=33.67 Aligned_cols=41 Identities=32% Similarity=0.530 Sum_probs=21.5
Q ss_pred hhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 005993 566 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQE 613 (666)
Q Consensus 566 ~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~ 613 (666)
|..|+.++-.||+..| .+|..|+.+|+.+++.|++..-+|+
T Consensus 4 l~~e~e~~~~klq~~E-------~rN~~Le~~v~~le~~Le~s~~~q~ 44 (79)
T 3cvf_A 4 MAAEREETQQKVQDLE-------TRNAELEHQLRAMERSLEEARAERE 44 (79)
T ss_dssp ------CTTHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555544 3456677777777777776654443
No 82
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=71.72 E-value=1.2 Score=44.27 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=39.0
Q ss_pred ccchhcccCCCCCCCcceEEEEECCCCCCHHHH--------HHHH-hcCCCCCCC---ccccccccCCcccccccccCCe
Q 005993 12 SKMLQLCSNLPSLWSFHCICFADNGGGMNPDKM--------RHCM-SLGYSAKSK---AANTIGQYGNGFKTSTMRLGAD 79 (666)
Q Consensus 12 a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~el--------~~~m-sfG~s~k~~---~~~~IGrYGnGfKTgSMRLGkd 79 (666)
|+.+.+.|+. .| .+.|.|||.||+.+.. .-+| .+=...|.. -....|..|.|++... .|...
T Consensus 56 ~~~I~V~i~~---~g--~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvN-AlS~~ 129 (220)
T 4duh_A 56 CKEIIVTIHA---DN--SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN-ALSQK 129 (220)
T ss_dssp CCEEEEEECT---TS--CEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCCTTC--------CCCHHHHH-HTEEE
T ss_pred CCEEEEEEeC---CC--cEEEEECCcCcccccccccCcchhhheeeecccCCCcCCCccccccCccceecchhc-ccccc
Confidence 5566666663 23 6999999999998752 1223 111112211 1357899999998543 45667
Q ss_pred EEEEeeecC
Q 005993 80 VIVFSCCCG 88 (666)
Q Consensus 80 viVfSK~~g 88 (666)
+.|-++.+|
T Consensus 130 l~v~v~r~g 138 (220)
T 4duh_A 130 LELVIQREG 138 (220)
T ss_dssp EEEEEEETT
T ss_pred eEEEEEECC
Confidence 888888765
No 83
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=70.74 E-value=76 Score=31.15 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=12.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHhH
Q 005993 563 LGQLKQENHELKKRLEKKEGEL 584 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~ 584 (666)
|...|..-.+++.++..++.+|
T Consensus 12 ~~ywk~~~~~~~q~~~~le~El 33 (189)
T 2v71_A 12 TAYWKELSMKYKQSFQEARDEL 33 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555665555554
No 84
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=70.68 E-value=12 Score=40.49 Aligned_cols=98 Identities=15% Similarity=0.326 Sum_probs=53.6
Q ss_pred hhhhhhhhhHHHHHHHHhHHh-H--HHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGE-L--QEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK 635 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~-~--~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~ 635 (666)
|+.+++.-..+++.|.++-.+ + -.++ ++.|.|..++++++.+.+++.|+--.+... .|++..--.|...|++
T Consensus 4 ~~~~r~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~-~~~~~~l~~~~~~~~~ 82 (425)
T 2dq3_A 4 INLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKRE-GKDTTEIQNRVKELKE 82 (425)
T ss_dssp HHHHHHCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSS-CSCTTTSTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CccHHHHHHHHHHHHH
Confidence 666776666778888777443 2 1222 455555555555555555555442111000 1333333456667777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCc
Q 005993 636 KIKDASDTIQDLLDKIKLLEKMKTPSI 662 (666)
Q Consensus 636 kl~~~~~~i~~~~~~~~~~~~~~~~~~ 662 (666)
+|++.-..+.++-+++..+- +..||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~ipN~ 108 (425)
T 2dq3_A 83 EIDRLEEELRKVEEELKNTL-LWIPNL 108 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 77777777766666666543 555554
No 85
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=70.53 E-value=5.5 Score=42.82 Aligned_cols=51 Identities=20% Similarity=0.431 Sum_probs=29.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005993 592 RSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKL 653 (666)
Q Consensus 592 ~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~ 653 (666)
+.|+++.++++++|+++..+.+.|.+. -.+|+.+|+|| -|+||||...|+.
T Consensus 13 ~~l~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~rr~l---~n~~~elkgnIrV 63 (403)
T 4etp_A 13 AALKEKIAALKEKIKDTELGMKELNEI--------LIKEETVRRTL---HNELQELRGNIRV 63 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH---HHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH---HHHHHHcCCCeEE
Confidence 333444444444444444444433322 34567888888 6889998877654
No 86
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=70.41 E-value=52 Score=36.37 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=24.7
Q ss_pred hhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHH
Q 005993 566 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTI 605 (666)
Q Consensus 566 ~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~ 605 (666)
++..+.+|+.+|..++...+...+.-+.|...++..|+++
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi 137 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQR 137 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccc
Confidence 5566788888888887665555555555555554444443
No 87
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=70.34 E-value=7.8 Score=33.28 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=29.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ 603 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~ 603 (666)
|+.+..+|.+|++|+..+|..|+.=+.+...+.++|+.+.+
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQ 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999988888876555555555555544443
No 88
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=69.69 E-value=8.5 Score=32.53 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=16.6
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQE 613 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~ 613 (666)
.+|..|+.+|+.+++.|++..-+|+
T Consensus 14 ~~N~~Le~~v~~le~~Le~s~~~q~ 38 (72)
T 3cve_A 14 IRNKDLEGQLSEMEQRLEKSQSEQD 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777655443
No 89
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=69.37 E-value=39 Score=29.44 Aligned_cols=71 Identities=17% Similarity=0.287 Sum_probs=40.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKI 637 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl 637 (666)
..++..+...+..+..+.|+++..=.-|++.|+.+++.++.+|.+++...+.- ...+..-+.|..+|-+|+
T Consensus 25 ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~----ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 25 AEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA----EKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 34555666666666666676665544566667766666666666665443322 112223345666666665
No 90
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=68.70 E-value=12 Score=32.10 Aligned_cols=72 Identities=24% Similarity=0.275 Sum_probs=47.5
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 638 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~ 638 (666)
|..|+..+.+|..+|...|+....++ ...-.|+.+|..++..++...+|=..|.||-. +=|.|-..-|+=|+
T Consensus 5 ie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~----~Le~EIatYRkLLE 80 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKL----ALDMEIHAYRKLLE 80 (86)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHc
Confidence 55677778888888888888776666 45566788888888888888888888888742 34566666555544
No 91
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=68.64 E-value=1.9 Score=43.10 Aligned_cols=72 Identities=18% Similarity=0.114 Sum_probs=42.3
Q ss_pred cccchhcccCCCCCCCcceEEEEECCCCCCHHH-------HHHHHh-cCCCCCCC---ccccccccCCcccccccccCCe
Q 005993 11 NSKMLQLCSNLPSLWSFHCICFADNGGGMNPDK-------MRHCMS-LGYSAKSK---AANTIGQYGNGFKTSTMRLGAD 79 (666)
Q Consensus 11 ~a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~e-------l~~~ms-fG~s~k~~---~~~~IGrYGnGfKTgSMRLGkd 79 (666)
.|+.+.+.|+. .| .+.|.|||.||+.+. +.-+|. +=...|.. -....|..|.|++..- .|...
T Consensus 60 ~~~~I~V~i~~---~g--~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvN-ALS~~ 133 (226)
T 4emv_A 60 FGDRIDVTINK---DG--SLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN-ALSSW 133 (226)
T ss_dssp CCSEEEEEECT---TS--CEEEEECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHHHHH-HTEEE
T ss_pred CCcEEEEEEeC---CC--eEEEEEcCCCccccccccCceehheeEEeecccCccCccceEeccccccccchhhh-hcccc
Confidence 35556666653 23 699999999999887 433341 11112221 1347899999998543 45667
Q ss_pred EEEEeeecC
Q 005993 80 VIVFSCCCG 88 (666)
Q Consensus 80 viVfSK~~g 88 (666)
+.|-++.+|
T Consensus 134 l~v~v~r~g 142 (226)
T 4emv_A 134 LEVEITRDG 142 (226)
T ss_dssp EEEEEEETT
T ss_pred eEEEEEeCC
Confidence 888888765
No 92
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=68.16 E-value=12 Score=38.23 Aligned_cols=83 Identities=24% Similarity=0.312 Sum_probs=49.6
Q ss_pred hhhhhhhhHHHHHHHHhHHhHHHHH----------------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005993 564 GQLKQENHELKKRLEKKEGELQEER----------------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE 627 (666)
Q Consensus 564 ~~~~~e~~~~~~~~~~~~~~~~~e~----------------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~ 627 (666)
.+|++--.+|+++|...-++|++.+ +-.++|++.-+.+++++|+...--+-.++-| +..=+
T Consensus 161 ~ql~~~a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~~~~~~qq~e~f~~~~~p~~e~~---~~~l~ 237 (273)
T 3s84_A 161 FQMKKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENF---NKALV 237 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhHHHH---HHHHH
Confidence 3556666777777777777776655 2345555666666677777755555566666 45567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005993 628 REEENLRKKIKDASDTIQDLLD 649 (666)
Q Consensus 628 ~e~~~lr~kl~~~~~~i~~~~~ 649 (666)
+++|.||.||--.+.++++-++
T Consensus 238 ~~~e~l~~~l~~~~~~~~~~~~ 259 (273)
T 3s84_A 238 QQMEQLRQKLGPHAGDVEGHLS 259 (273)
T ss_dssp HHHHHHHHHHSCC---------
T ss_pred HHHHHHHHHhCcchhhHHhhhh
Confidence 8889999999766666654433
No 93
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=67.56 E-value=2.4 Score=37.25 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=36.2
Q ss_pred hcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCcccccccccCCeEEEEee
Q 005993 16 QLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSC 85 (666)
Q Consensus 16 n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTgSMRLGkdviVfSK 85 (666)
.++|.+..-.+.-.|.|.|||.||+ .+.++..-.++.+. ..+..|.||....-... .+.+-+.
T Consensus 63 ~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~----~~~~~GlGL~iv~~~~~-~i~~~~~ 125 (145)
T 1th8_A 63 IVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPLFTTKP----ELERSGMGFTIMENFMD-EVIVESE 125 (145)
T ss_dssp EEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCCC-----------CCCSCHHHHHHHHSS-EEEEEEE
T ss_pred EEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhcccccCCC----CCCCCcchHHHHHHHHh-eEEEEeC
Confidence 3444443334667899999999999 66666654444332 23456888876554433 5555554
No 94
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=67.52 E-value=10 Score=31.84 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=15.6
Q ss_pred chhhhhhhhhhhHHHHHHHHhH
Q 005993 560 GANLGQLKQENHELKKRLEKKE 581 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~ 581 (666)
+| ++.|-.||++|||-|..--
T Consensus 8 e~-~q~ll~EN~~LreAlkqsN 28 (70)
T 3brv_B 8 ET-LQRCLEENQELRDAIRQSN 28 (70)
T ss_dssp CH-HHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHhHHHHHHHHHHH
Confidence 55 7788888888888776543
No 95
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=67.08 E-value=22 Score=30.23 Aligned_cols=71 Identities=18% Similarity=0.323 Sum_probs=50.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKI 637 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl 637 (666)
|..|+..|.+|...|...|.....++ .+.-.|+.+|..+++.++....|=..|.||-. +=|.|-..-|+=|
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~----~Ld~EIatYRkLL 77 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKM----ALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHH
Confidence 45677778888888888887766555 56667888888888888888888888888732 3345555555444
No 96
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=66.74 E-value=20 Score=30.94 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=41.9
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI 616 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li 616 (666)
..-|-||...||-|+..+|.+-.+=--|.|+-.+++..+|++|++-+.|-+.|-
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 456789999999999999987433335677777999999999998777655543
No 97
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=66.58 E-value=24 Score=28.44 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005993 602 QQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 638 (666)
Q Consensus 602 ~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~ 638 (666)
.-++.++.+|+..|--.+-||...|..=|+.+|+=|+
T Consensus 16 kDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 16 KDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444554444444445554433
No 98
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.42 E-value=27 Score=33.29 Aligned_cols=21 Identities=14% Similarity=0.098 Sum_probs=13.4
Q ss_pred hhhhhhhhhhHHHHHHHHhHH
Q 005993 562 NLGQLKQENHELKKRLEKKEG 582 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~ 582 (666)
-|.++++++..++.|+...|.
T Consensus 21 ~L~~~R~el~~~~~ri~~lE~ 41 (154)
T 2ocy_A 21 QLNKSLKTIASQKAAIENYNQ 41 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366677777766666665553
No 99
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=63.72 E-value=40 Score=29.33 Aligned_cols=49 Identities=27% Similarity=0.420 Sum_probs=25.1
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDT 643 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~ 643 (666)
||-+.||.|=..++.+|+.+.....+ .-..--+.|-++||++|.++...
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~------~~~~~ye~~i~~Lr~~i~~~~~e 71 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKS------RLGDLYEEEMRELRRQVDQLTND 71 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC------CcHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666655555555555432222 12223445556666666655544
No 100
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=62.90 E-value=47 Score=36.74 Aligned_cols=99 Identities=10% Similarity=0.193 Sum_probs=55.3
Q ss_pred hhhhhhhh--hHHHHHHHHhHHh--HHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHH--------------H--
Q 005993 563 LGQLKQEN--HELKKRLEKKEGE--LQEER----ERCRSLEAQLKVMQQTIEELNKEQESLID--------------I-- 618 (666)
Q Consensus 563 ~~~~~~e~--~~~~~~~~~~~~~--~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~--------------~-- 618 (666)
|+.|++.- ..+++.|.++-.+ +-.++ ++.|.|..++++++++.+++.|+=-.+.. +
T Consensus 10 i~~~r~~~~~~~v~~~~~~R~~~~~~~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~ 89 (484)
T 3lss_A 10 IQLFRDETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKE 89 (484)
T ss_dssp GGGGGSHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-------------
T ss_pred HHHHHcCCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccc
Confidence 66676652 4688888876433 22222 67778888888887777777665433322 0
Q ss_pred -------HHHHHhhh----HHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCc
Q 005993 619 -------FAEERDRR----ERE-EENLRKKIKDASDTIQDLLDKIKLLEKMKTPSI 662 (666)
Q Consensus 619 -------f~eer~~~----~~e-~~~lr~kl~~~~~~i~~~~~~~~~~~~~~~~~~ 662 (666)
=.|+++.- -.| ...|+.+|++.-..+.++-+++..+- +..||+
T Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l-~~iPN~ 144 (484)
T 3lss_A 90 AYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLM-LNVGNI 144 (484)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCC
T ss_pred cccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 01233322 233 56666777766666666666666543 555654
No 101
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.85 E-value=43 Score=31.07 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=24.1
Q ss_pred hhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 005993 568 QENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL 615 (666)
Q Consensus 568 ~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l 615 (666)
+|.-.+++....++.++.......-+|-.+|..++-+++++.++-+.|
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l 115 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKEL 115 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555444433444445555555555555555554444
No 102
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=62.04 E-value=89 Score=28.31 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=10.2
Q ss_pred hhhhhhhhhHHHHHHHHhH
Q 005993 563 LGQLKQENHELKKRLEKKE 581 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~ 581 (666)
..+|+-|..++|+++....
T Consensus 12 ~~~L~~E~e~~k~K~~~~~ 30 (111)
T 2v66_B 12 NQRLKYEVEALKEKLEHQY 30 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555665555443
No 103
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=61.30 E-value=31 Score=33.80 Aligned_cols=85 Identities=15% Similarity=0.227 Sum_probs=49.1
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHH
Q 005993 571 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTI-EEL--NKEQESLIDIFAEERDRREREEENLRKKIKDA--SDTIQ 645 (666)
Q Consensus 571 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~-~~~--~keq~~li~~f~eer~~~~~e~~~lr~kl~~~--~~~i~ 645 (666)
.++..+|...-..++..++..+.|+.+...-++++ .++ +--+.+|...|...-..-|.|=++|..+..+. ...+.
T Consensus 82 l~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~~~~~e~dv~ 161 (192)
T 2p22_C 82 EENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTTRSIDSADDLD 161 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchHH
Confidence 33334444444445555566666666664444444 232 23456677777777777777777777777653 45677
Q ss_pred HHHHHHhhhh
Q 005993 646 DLLDKIKLLE 655 (666)
Q Consensus 646 ~~~~~~~~~~ 655 (666)
+.+.+.+..+
T Consensus 162 ~Fl~~y~~~R 171 (192)
T 2p22_C 162 QFIKNYLDIR 171 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776666543
No 104
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=61.13 E-value=89 Score=34.79 Aligned_cols=81 Identities=17% Similarity=0.298 Sum_probs=48.3
Q ss_pred hHHHHHHHHhHHhH-------HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHH
Q 005993 571 HELKKRLEKKEGEL-------QEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE--REEENLRKKIKDAS 641 (666)
Q Consensus 571 ~~~~~~~~~~~~~~-------~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~--~e~~~lr~kl~~~~ 641 (666)
.-|+.||.....++ +.-....-.+..+.+.|++.++.+.||++.+-+..++-+.+-. ++.+.-.+.||+|+
T Consensus 352 ~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK~dE~~aIKDAV 431 (602)
T 1cii_A 352 DKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDELKATKDAI 431 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhHHHHHHHHH
Confidence 34666666665553 2222244456667789999999999999998666665433311 11122234577777
Q ss_pred HHHHHHHHHH
Q 005993 642 DTIQDLLDKI 651 (666)
Q Consensus 642 ~~i~~~~~~~ 651 (666)
..+-+..++|
T Consensus 432 kfTAdFykkI 441 (602)
T 1cii_A 432 NFTTEFLKSV 441 (602)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7765555444
No 105
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=61.05 E-value=30 Score=46.50 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 005993 624 DRREREEENLRKKIKDASDTI 644 (666)
Q Consensus 624 ~~~~~e~~~lr~kl~~~~~~i 644 (666)
+..-+|.+.|...++.+..++
T Consensus 2052 ~~~~~ek~~L~~e~~~~~~kl 2072 (3245)
T 3vkg_A 2052 ATLIRETEQIKTESSKVKNKV 2072 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555444444
No 106
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=60.86 E-value=58 Score=27.90 Aligned_cols=63 Identities=25% Similarity=0.304 Sum_probs=44.3
Q ss_pred HHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005993 572 ELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDAS 641 (666)
Q Consensus 572 ~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~ 641 (666)
-|+.||...=+.-+-|++-.+.-+.+|..=+++|+++- .=+..|++.=+.+-+.|+.|.++-.
T Consensus 11 KLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi-------~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMV-------TRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666667777777777777777777777653 3455677777888888888887644
No 107
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=60.82 E-value=71 Score=27.95 Aligned_cols=47 Identities=11% Similarity=0.189 Sum_probs=24.7
Q ss_pred hhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 005993 564 GQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 610 (666)
Q Consensus 564 ~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~k 610 (666)
.++..+...+..+..+.|+++..=--|+..|+.+|+.++.+|.+++.
T Consensus 26 e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~ 72 (101)
T 3u1c_A 26 EQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSED 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666655544334555555555555555555443
No 108
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=60.69 E-value=44 Score=31.60 Aligned_cols=63 Identities=24% Similarity=0.279 Sum_probs=32.3
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005993 573 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKD 639 (666)
Q Consensus 573 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~ 639 (666)
--..|..--+.|..|++.++.|.+.|+++.+..++.-.|.+-..+ |=.+.-....++|+||+.
T Consensus 80 A~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~le----eyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 80 ACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLE----EYKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 333444444446667777777777776666655554444433322 223333344455555543
No 109
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=60.32 E-value=11 Score=40.67 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 005993 629 EEENLRKKIKDASDTIQDLLDKIKL 653 (666)
Q Consensus 629 e~~~lr~kl~~~~~~i~~~~~~~~~ 653 (666)
+++.+|+||- |+||||-+.|+.
T Consensus 42 ~~~~~rr~l~---n~~~~l~gnIrV 63 (412)
T 3u06_A 42 QSNMERKELH---NTVMDLRDNIRV 63 (412)
T ss_dssp HHHHHHHHHH---HHHHHHTCSEEE
T ss_pred HHHHHHHHHH---HHHHHhCCCEEE
Confidence 4567777764 778888776653
No 110
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=60.25 E-value=42 Score=28.12 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=22.5
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEE 607 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~ 607 (666)
|.+|+.|.....+|+...+..+...-.++..++..+..++++|..
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~ 52 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKG 52 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344555555555555555555544444444444444444444433
No 111
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=60.07 E-value=36 Score=30.12 Aligned_cols=57 Identities=26% Similarity=0.398 Sum_probs=31.7
Q ss_pred hHHHHHHHHhHHhH---HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005993 571 HELKKRLEKKEGEL---QEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE 627 (666)
Q Consensus 571 ~~~~~~~~~~~~~~---~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~ 627 (666)
..|+.+|.-.|+.| +.+.|+.|...++.+...-+++-+...-+---+=|--||..|+
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadRE 64 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE 64 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888877776 4444555555555554444555444333333344656665553
No 112
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=59.76 E-value=21 Score=30.06 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=31.0
Q ss_pred HHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHH
Q 005993 575 KRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKE 611 (666)
Q Consensus 575 ~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~ke 611 (666)
+||...-|+|+..+ +-+|.|+.+++.+|+.+..++|.
T Consensus 20 ~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~ 60 (74)
T 2q6q_A 20 FELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKK 60 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 67777778888887 77899999999999998888875
No 113
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=59.75 E-value=27 Score=38.22 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=16.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQ 585 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~ 585 (666)
+.+|..+..+|+..|..++.++.
T Consensus 294 ~~~l~~~~~~L~~~l~~v~~~l~ 316 (483)
T 2j1d_G 294 MTELDKEISTLRSGLKAVETELE 316 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777788888877776654
No 114
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=58.44 E-value=25 Score=32.34 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=31.9
Q ss_pred HHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005993 585 QEER-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDT 643 (666)
Q Consensus 585 ~~e~-~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~ 643 (666)
.+|+ ..|++|+.+|+++++.+.-+.+.-..- .|=..|-.+|.+-.+.+|.++++..+.
T Consensus 69 ~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF-~l~~~Ei~~Rr~fV~~~r~~I~~mk~~ 127 (130)
T 4dnd_A 69 TNELRNGLRSIEWDLEDLEETIGIVEANPGKF-KLPAGDLQERKVFVERMREAVQEMKDH 127 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 566666666666666555433221111 122456677777777777776655443
No 115
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=57.56 E-value=84 Score=26.28 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=13.7
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH
Q 005993 573 LKKRLEKKEGELQEERERCRSLEAQLKVMQQ 603 (666)
Q Consensus 573 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~ 603 (666)
+|.+|..++.+...=.++.-.++.++.++.+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~ 34 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEE 34 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554443333433334444443333
No 116
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=56.81 E-value=99 Score=29.21 Aligned_cols=62 Identities=21% Similarity=0.381 Sum_probs=26.0
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHHh
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDAS----DTIQDLLDKIK 652 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~----~~i~~~~~~~~ 652 (666)
+++|++|+++ +.+--+.+.++.|.|-..+-+...--..=+|.|..|++..- .-|.+|+++|+
T Consensus 57 ERRks~Ea~~--lk~laekrehe~EvlqKa~Een~~F~k~aeEkL~~KME~~kEnReA~laal~erLk 122 (143)
T 3ryc_E 57 ERRKYQEAEL--LKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQ 122 (143)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445555544 22222333334444433333322233334455555554322 13455555555
No 117
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=56.71 E-value=1.2e+02 Score=30.85 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=12.8
Q ss_pred hhhhhhhhHHHHHHHHhHHhHH
Q 005993 564 GQLKQENHELKKRLEKKEGELQ 585 (666)
Q Consensus 564 ~~~~~e~~~~~~~~~~~~~~~~ 585 (666)
.+|..+..+|+.+|...-++++
T Consensus 18 ~~l~~~~eel~~~L~P~~~~l~ 39 (273)
T 3s84_A 18 EEIGKELEELRARLLPHANEVS 39 (273)
T ss_dssp HHHHHHHHHHHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHH
Confidence 3455556666666666555554
No 118
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=56.56 E-value=35 Score=31.22 Aligned_cols=45 Identities=29% Similarity=0.247 Sum_probs=31.7
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQT 604 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~ 604 (666)
...|.+|+.|+..||-.|.++-.+-++.. +.+-.|+.+|.+.++.
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999988876655544 5555555555555443
No 119
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=55.83 E-value=10 Score=35.48 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005993 627 EREEENLRKKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 627 ~~e~~~lr~kl~~~~~~i~~~~~~~~~~~ 655 (666)
++..+.|+..|+|+-..|..|=+||..|.
T Consensus 102 e~r~~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 102 EILNKRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp HHHHHHHHHTTTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677778887776766666666553
No 120
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=55.78 E-value=1e+02 Score=27.16 Aligned_cols=62 Identities=23% Similarity=0.380 Sum_probs=36.6
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005993 573 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQ 645 (666)
Q Consensus 573 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~ 645 (666)
|--||...|.+|+.|.--...|..|-+++...|..+..| .++|+.|= ..|..||.||...|.
T Consensus 2 lan~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e--------~~~R~~~i---~el~akidd~Lk~l~ 63 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESE--------GAEREKRL---RELEAKLDETLKNLE 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH---HHHHHHHHHHHHccc
Confidence 446778888888887755444555544444444333222 34454443 346678888888775
No 121
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=55.54 E-value=6.3 Score=41.92 Aligned_cols=44 Identities=7% Similarity=0.064 Sum_probs=29.6
Q ss_pred cceeEEEeccccccc--ccccccch---hHHHHHHHHHHHHHHHHHhhh
Q 005993 328 RGVIGVLEANFVEPA--HDKQGFER---TTVLARLEARLIQMQKDYWNN 371 (666)
Q Consensus 328 rGVIGVvEanflePt--HNKQdFe~---t~ly~rLe~rL~q~~~eYW~~ 371 (666)
.|+++||.|--.+|. -.=|.=+. .......+..+.+.+..|..+
T Consensus 298 egl~avisvk~~~P~~~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~ 346 (369)
T 3cwv_A 298 QGLTAIVAVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLRE 346 (369)
T ss_dssp TTEEEEEEEECCGGGCCBSSTTCCSBCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred hccEEEEEeccCCcchhccccccchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999878885 44333322 345666677777777777754
No 122
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=54.74 E-value=29 Score=34.99 Aligned_cols=51 Identities=22% Similarity=0.205 Sum_probs=45.5
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 610 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~k 610 (666)
++|...|-..-..+|+||.-++..|++.++.+.|+..+|++.+|++.++..
T Consensus 163 e~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 163 SVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888889999999999999999999999999999999999988753
No 123
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=54.59 E-value=32 Score=31.60 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=4.5
Q ss_pred HHHHHhHHh
Q 005993 575 KRLEKKEGE 583 (666)
Q Consensus 575 ~~~~~~~~~ 583 (666)
++|..+|..
T Consensus 19 q~L~~~E~q 27 (119)
T 3etw_A 19 QNLANQEEA 27 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555544
No 124
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=53.97 E-value=61 Score=28.55 Aligned_cols=65 Identities=22% Similarity=0.392 Sum_probs=43.6
Q ss_pred hHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 583 ELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER--DRREREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 583 ~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer--~~~~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
-+.+|....+.+..+++.++.+|+.++ ..|-|+ |++ +..|.-.....++|+|++--|.|+++...
T Consensus 13 ll~~E~~l~~gv~~~i~~Lk~eL~~m~---a~L~da--~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~ 79 (115)
T 3qfl_A 13 LLTEEFKLHKGVKKNIEDLGKELESMN---AALIKI--GEVPREQLDSQDKLWADEVRELSYVIEDVVDKFL 79 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--TTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHH---HHHHHH--HHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666777766666654 334443 444 34577788889999999988888887654
No 125
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=53.96 E-value=1.1e+02 Score=33.78 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=7.0
Q ss_pred hhhhhhhhhHHHH
Q 005993 563 LGQLKQENHELKK 575 (666)
Q Consensus 563 ~~~~~~e~~~~~~ 575 (666)
|.+|++...+|..
T Consensus 102 LqeLe~~l~~lsn 114 (464)
T 1m1j_B 102 LRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 5555555555543
No 126
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=53.76 E-value=86 Score=26.42 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=24.6
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVM 601 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~ 601 (666)
|+.+..+|.+|++|+..+|..|+.=+.+...+.++|+.+
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888888888777777655444444444444333
No 127
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=53.45 E-value=4.5 Score=43.64 Aligned_cols=70 Identities=17% Similarity=0.137 Sum_probs=41.8
Q ss_pred ccchhcccCCCCCCCcceEEEEECCCCCCHHH--------HHHHHh-cCCCCCCC---ccccccccCCcccccccccCCe
Q 005993 12 SKMLQLCSNLPSLWSFHCICFADNGGGMNPDK--------MRHCMS-LGYSAKSK---AANTIGQYGNGFKTSTMRLGAD 79 (666)
Q Consensus 12 a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~e--------l~~~ms-fG~s~k~~---~~~~IGrYGnGfKTgSMRLGkd 79 (666)
|+.+.+.|+. +...+.|.|||.||+.+. +.-+|. +-...|.. -.-..|..|.|++... .|...
T Consensus 74 ~~~I~V~i~~----~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVn-AlS~~ 148 (400)
T 1zxm_A 74 MSCIRVTIDP----ENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCN-IFSTK 148 (400)
T ss_dssp CCEEEEEEET----TTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHH-HTEEE
T ss_pred CceEEEEEEC----CCCEEEEEECCCcccCccccccCccchhheeeeecccCCCCCCcccccCCccccceeeeE-Eeccc
Confidence 4445555543 225899999999999775 333442 11112211 1237899999998543 45566
Q ss_pred EEEEeee
Q 005993 80 VIVFSCC 86 (666)
Q Consensus 80 viVfSK~ 86 (666)
+.|-++.
T Consensus 149 l~v~v~~ 155 (400)
T 1zxm_A 149 FTVETAS 155 (400)
T ss_dssp EEEEEEE
T ss_pred eEEEEec
Confidence 6676665
No 128
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=53.43 E-value=52 Score=37.15 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005993 634 RKKIKDASDTIQDLLDK 650 (666)
Q Consensus 634 r~kl~~~~~~i~~~~~~ 650 (666)
++|.+.-.+.|++|-.+
T Consensus 566 ~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444555566666655
No 129
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=52.94 E-value=53 Score=27.65 Aligned_cols=47 Identities=23% Similarity=0.281 Sum_probs=35.2
Q ss_pred hhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 005993 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 611 (666)
Q Consensus 565 ~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke 611 (666)
.||+-|..||+|...+..=-.+.++...-|+-++++|...++.+..|
T Consensus 23 AlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv~~L~~E 69 (70)
T 3brv_B 23 AIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 56778888888888777666666677777888888888887777654
No 130
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=51.99 E-value=1.2e+02 Score=34.04 Aligned_cols=96 Identities=17% Similarity=0.262 Sum_probs=41.8
Q ss_pred hhhhHHHHHHHHhHHhHHHHHHhhhcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHH
Q 005993 568 QENHELKKRLEKKEGELQEERERCRSLEAQ----LKVMQQTIEELNKEQESLIDIFAEERDRRE----REEENLRKKIKD 639 (666)
Q Consensus 568 ~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~----~~~~~~~~~~~~keq~~li~~f~eer~~~~----~e~~~lr~kl~~ 639 (666)
+.+..|+.||.++...+..=-...++-+.. .+.+++++...+ +.+..+.-+++|=+|+- +|..+.-..|+.
T Consensus 57 kqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrv 135 (562)
T 3ghg_A 57 EVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQL 135 (562)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666655542211111211111 122233333333 33445555553333332 222222244444
Q ss_pred HHHHHHHHHHHHhhhh--------hcCCCCccc
Q 005993 640 ASDTIQDLLDKIKLLE--------KMKTPSIRA 664 (666)
Q Consensus 640 ~~~~i~~~~~~~~~~~--------~~~~~~~~~ 664 (666)
--+.|.+++.+|..|| .-|+||-|+
T Consensus 136 LQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~ 168 (562)
T 3ghg_A 136 LQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRA 168 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 4455555555555554 356777664
No 131
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=51.20 E-value=62 Score=36.37 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 005993 632 NLRKKIKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 632 ~lr~kl~~~~~~i~~~~~~~~~~~ 655 (666)
.||+++..--.+|+.-+.+|++|+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQ 137 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQ 137 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666554
No 132
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=51.05 E-value=52 Score=26.99 Aligned_cols=48 Identities=35% Similarity=0.419 Sum_probs=43.9
Q ss_pred hhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 005993 568 QENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL 615 (666)
Q Consensus 568 ~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l 615 (666)
+|--|+|.-|---|+.+|+=+.-+-+|-++|--+|++|.++..|+-.|
T Consensus 13 qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 13 QEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 677899999999999999999999999999999999999999998766
No 133
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=50.85 E-value=41 Score=33.15 Aligned_cols=50 Identities=20% Similarity=0.324 Sum_probs=35.4
Q ss_pred hHHHHHHHHhHHhHHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 571 HELKKRLEKKEGELQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 620 (666)
Q Consensus 571 ~~~~~~~~~~~~~~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ 620 (666)
-+|..||.++|-.|...- +|.+.|..|++||+.=-|-++.-...+-+|++
T Consensus 83 LsLs~RLaRvenaL~~~~~Er~sL~~K~~~L~~Q~EDAkeLKe~ldRRe~~V~~iL~ 139 (190)
T 3thf_A 83 LSLSERLAQTESSLETRQQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLA 139 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999985433 56666666666666655666666666666654
No 134
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=50.64 E-value=16 Score=37.48 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=17.8
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESL 615 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~l 615 (666)
.+++.|.+.|.+++++|+.+..|-+.|
T Consensus 68 arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 68 ARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666667777776666666555
No 135
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=50.49 E-value=3 Score=35.45 Aligned_cols=51 Identities=24% Similarity=0.282 Sum_probs=33.2
Q ss_pred hhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCccccccccCCccccc---ccccCCeEEEEeeec
Q 005993 15 LQLCSNLPSLWSFHCICFADNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS---TMRLGADVIVFSCCC 87 (666)
Q Consensus 15 ~n~~i~~~~~~G~~~L~I~DDG~GMd~~el~~~msfG~s~k~~~~~~IGrYGnGfKTg---SMRLGkdviVfSK~~ 87 (666)
..+.|.+..-.+ -.|.|.|||.||+++. .|.||..+ .-.+|-.+.+-+...
T Consensus 62 ~~i~i~~~~~~~-~~i~v~D~G~gi~~~~---------------------~GlGL~i~~~~~~~~gG~i~~~~~~~ 115 (129)
T 3zxo_A 62 STLTVRVKVDDD-LCIEVTDNGRGMPDEF---------------------TGSGLTNLRQRAEQAGGEFTLASMPG 115 (129)
T ss_dssp CEEEEEEEESSE-EEEEEEECCCCCTTTT---------------------CSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred ceEEEEEEEcCC-EEEEEecCCCCCCccc---------------------CCcCHHHHHHHHHHcCCEEEEeeCCC
Confidence 344444433334 7899999999998765 37777533 234667777776643
No 136
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.78 E-value=47 Score=30.03 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=29.9
Q ss_pred hhhhhHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 567 KQENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDI 618 (666)
Q Consensus 567 ~~e~~~~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~ 618 (666)
+..+.+|...|...|.....++ .+.-.||.+|..+++.++....|=..|.||
T Consensus 56 ~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Llnv 111 (129)
T 3tnu_B 56 KKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNT 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443333333 455567777777777777777776677766
No 137
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=48.83 E-value=25 Score=35.02 Aligned_cols=48 Identities=31% Similarity=0.484 Sum_probs=38.3
Q ss_pred hhhhhhhhhHHHHHHHHhHHh---HHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGE---LQEERERCRSLEAQLKVMQQTIEELNK 610 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~---~~~e~~~~~~l~~~~~~~~~~~~~~~k 610 (666)
|..--+||..|.++|..++++ |..|.+.+|.|.++++.+-.-|+++..
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~ 160 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333348999999999999988 577789999999999888877777653
No 138
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=48.46 E-value=1.5e+02 Score=32.20 Aligned_cols=31 Identities=29% Similarity=0.265 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 626 REREEENLRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 626 ~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
.+.+.+.|+..|+...+.|++|-++|..++.
T Consensus 103 ~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 103 HENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3456678888888888999999988887764
No 139
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=47.53 E-value=1.8e+02 Score=27.44 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=40.6
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHH-----HhhhcHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHh
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEER-----ERCRSLEAQLKVMQQTIEELNKEQ------------ESLIDIFAEERD 624 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~-----~~~~~l~~~~~~~~~~~~~~~keq------------~~li~~f~eer~ 624 (666)
+..+|.++...|+++|.+=-++++..+ +-...+...+++++++|+-.-.|- ..|.-+..+=|.
T Consensus 72 ~~~~l~~~~~~Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~ 151 (185)
T 3r2p_A 72 FWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRD 151 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 455566666677777766666655544 334445555566665555443332 223333334455
Q ss_pred hhHHHHHHHHHHHH
Q 005993 625 RREREEENLRKKIK 638 (666)
Q Consensus 625 ~~~~e~~~lr~kl~ 638 (666)
+-.+-.++||..|.
T Consensus 152 ~l~~~~e~lk~~l~ 165 (185)
T 3r2p_A 152 RARAHVDALRTHLA 165 (185)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 55555555555543
No 140
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=47.42 E-value=52 Score=25.17 Aligned_cols=13 Identities=62% Similarity=0.871 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHH
Q 005993 627 EREEENLRKKIKD 639 (666)
Q Consensus 627 ~~e~~~lr~kl~~ 639 (666)
+.|-.|||+|+++
T Consensus 37 ekeianlrkkiee 49 (49)
T 3he5_A 37 EKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcC
Confidence 4677889988764
No 141
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=46.88 E-value=1.2e+02 Score=26.17 Aligned_cols=49 Identities=20% Similarity=0.438 Sum_probs=27.8
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRS-LEAQLKVMQQTIEELNKEQES 614 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~-l~~~~~~~~~~~~~~~keq~~ 614 (666)
...|.++|..|...+....+. +.....+ -+..+.+++++|+.+..|-..
T Consensus 25 VR~LEqqN~~Le~~i~~l~~~---~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~ 74 (93)
T 3s4r_A 25 VRFLEQQNKILLAELEQLKGQ---GKSRLGDLYEEEMRELRRQVDQLTNDKAR 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc---cCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557788888876665443321 1222222 366667777777766665443
No 142
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=46.57 E-value=35 Score=27.54 Aligned_cols=48 Identities=29% Similarity=0.352 Sum_probs=36.3
Q ss_pred cCccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHH
Q 005993 554 LSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVM 601 (666)
Q Consensus 554 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~ 601 (666)
|.+.||-...=+|+||..+|+.-.+++...|..|.--+|.||.=+-.+
T Consensus 3 veEKSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 3 LGSKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556789999999999999999999988887777777655444
No 143
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=46.55 E-value=1.6e+02 Score=26.23 Aligned_cols=29 Identities=10% Similarity=0.181 Sum_probs=14.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005993 619 FAEERDRREREEENLRKKIKDASDTIQDL 647 (666)
Q Consensus 619 f~eer~~~~~e~~~lr~kl~~~~~~i~~~ 647 (666)
|-+.+++-.+++..|-.+|......-+.|
T Consensus 73 lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 73 LQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444444333
No 144
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=46.48 E-value=78 Score=27.28 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=41.1
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL 615 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l 615 (666)
++.+|......+=+.+.-++.++..-.+++-.|..+.++|+..-+.+..|.+-|
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qL 60 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 577777777777777777777777777888889998888877777766665544
No 145
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.90 E-value=75 Score=29.74 Aligned_cols=21 Identities=14% Similarity=0.098 Sum_probs=14.7
Q ss_pred hhhhhhhhhhHHHHHHHHhHH
Q 005993 562 NLGQLKQENHELKKRLEKKEG 582 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~ 582 (666)
-|-+++.++.+.+.|+...|.
T Consensus 9 ~L~~~r~~l~~~~~~~~~le~ 29 (135)
T 2e7s_A 9 QLNKSLKTIASQKAAIENYNQ 29 (135)
T ss_dssp TTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 377777777777777766654
No 146
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=45.75 E-value=58 Score=25.74 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=18.8
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESL 615 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~l 615 (666)
.+|..|.+-|++|.++|+.|+.+-+.|
T Consensus 23 ~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 23 ARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677777777777777777665554
No 147
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=45.59 E-value=33 Score=33.16 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=13.9
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHhHHHHH
Q 005993 561 ANLGQLKQENHELKKRLEKKEGELQEER 588 (666)
Q Consensus 561 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~ 588 (666)
+|.++.+.+..+|++.|..+..+|+.++
T Consensus 78 ~I~~e~r~~~~~Lr~ql~akr~EL~aL~ 105 (175)
T 3lay_A 78 KIYDDYYTQTSALRQQLISKRYEYNALL 105 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555444
No 148
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=45.36 E-value=44 Score=36.09 Aligned_cols=50 Identities=20% Similarity=0.221 Sum_probs=22.0
Q ss_pred hhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 621 (666)
Q Consensus 565 ~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e 621 (666)
.|++|..+|+|++..+++. ++.+++++++++++|-+.+.+-..|-+.+.|
T Consensus 7 ~l~~el~~~~~~~~~l~~~-------~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~ 56 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRC-------NEQQAAELETCKEQLFQSNMERKELHNTVMD 56 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544444333 3334444444444444444444444444433
No 149
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=45.18 E-value=1.1e+02 Score=27.49 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHhhh
Q 005993 628 REEENLRKKIKDASD-------TIQDLLDKIKLL 654 (666)
Q Consensus 628 ~e~~~lr~kl~~~~~-------~i~~~~~~~~~~ 654 (666)
.+-..||+=+.+|.- .|+-|.|.|.-+
T Consensus 69 ~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 69 NTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456665555543 345555554433
No 150
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.96 E-value=48 Score=28.01 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=21.6
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 005993 571 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 610 (666)
Q Consensus 571 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~k 610 (666)
.+|++=|.++.++|+..=+..+.|+.+|++-...|.++..
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666655444455555555444444444433
No 151
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=44.23 E-value=2.3e+02 Score=27.39 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=58.1
Q ss_pred HHHhHHhHHHHH---HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------HHHHHHHH
Q 005993 577 LEKKEGELQEER---ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK-------DASDTIQD 646 (666)
Q Consensus 577 ~~~~~~~~~~e~---~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~-------~~~~~i~~ 646 (666)
|..+.+-|+.|- .|.|...+++.-+.+.+|..+.|-..-+..+...|+-=++|..+|..-|. -++.+|.|
T Consensus 15 L~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~e 94 (168)
T 3o0z_A 15 LEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGD 94 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444 46666777777777889999999888888888899998998888877664 46778888
Q ss_pred HHHHHhhhh
Q 005993 647 LLDKIKLLE 655 (666)
Q Consensus 647 ~~~~~~~~~ 655 (666)
|-.+|..|.
T Consensus 95 lq~ri~~L~ 103 (168)
T 3o0z_A 95 LQARITSLQ 103 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877776654
No 152
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=44.02 E-value=1.1e+02 Score=31.23 Aligned_cols=51 Identities=29% Similarity=0.434 Sum_probs=28.4
Q ss_pred HHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 599 KVMQQTIEEL---NKEQES-LIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 599 ~~~~~~~~~~---~keq~~-li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
++.|++|+.+ -|.|++ +++-++|- |+.|.+.|.+.+++.++.+...-++|+
T Consensus 147 eei~~KLeaAeErRk~qea~~Lk~Laek---rEHe~eVlqka~e~n~~f~k~~eekl~ 201 (240)
T 4f61_I 147 EKLAQKMESNKENRKYQEAELLKHLAEK---REHEREVIQRAIEENNNWIKMAKEKLA 201 (240)
T ss_dssp HHHHHHHHHHHHHHTGGGTHHHHHHHHH---HHHHHHHTTHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555443 233332 44555544 467777777777776666655555553
No 153
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=43.86 E-value=2.4e+02 Score=27.59 Aligned_cols=112 Identities=11% Similarity=0.156 Sum_probs=67.8
Q ss_pred CCCCccCccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHH-------------------------------HH
Q 005993 549 YPEHFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLE-------------------------------AQ 597 (666)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~-------------------------------~~ 597 (666)
-.+-..|.|..++.|+.+.++...++.+|+++....+.=.+.-+.+. .+
T Consensus 9 f~e~~~DSP~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~ 88 (265)
T 2q12_A 9 IEETLEDSPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQ 88 (265)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-----CHHHHHHHH
T ss_pred hHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHHHHH
Confidence 33445666888889999999999999999998766422221111111 12
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 005993 598 LKVMQQTIEE-----LNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTP 660 (666)
Q Consensus 598 ~~~~~~~~~~-----~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~~~~ 660 (666)
+-++.+.|+. +.+-+..+++-+..=++.-=.+...+|+++..++..-...+++...+++.|.+
T Consensus 89 f~~~l~ei~~~~~~l~~~~~~~~~~PL~~f~~~dlk~~ke~kk~fdk~~~~yd~al~k~~~~~k~k~~ 156 (265)
T 2q12_A 89 FSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKREN 156 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 2222222221 12333344444443344444566788999999999999999998888877643
No 154
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=43.57 E-value=1.3e+02 Score=25.42 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=16.9
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEE 587 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e 587 (666)
|..|..|+.+|-++|+..+++++..
T Consensus 6 v~~l~~E~eel~~klk~~~ee~~~~ 30 (71)
T 1uix_A 6 VANLANEKEELNNKLKEAQEQLSRL 30 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777777666543
No 155
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=42.39 E-value=1.1e+02 Score=29.01 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005993 599 KVMQQTIEELNK----EQESLIDIFAEERDRREREEENLRKKIKDA 640 (666)
Q Consensus 599 ~~~~~~~~~~~k----eq~~li~~f~eer~~~~~e~~~lr~kl~~~ 640 (666)
+.+|+.+|+-|. -+|.|.-=.-.-..-|..=-..|+.||++-
T Consensus 79 EvlqKa~Een~~F~k~aeEkL~~KME~~kEnReA~laal~erLkek 124 (143)
T 3ryc_E 79 EVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEK 124 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 445556665331 234444333334444444455566666644
No 156
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=42.16 E-value=31 Score=30.77 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=20.8
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQE 586 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~ 586 (666)
..-|+.|+.||..|++++..+|..|.+
T Consensus 18 r~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344788888888888888888877744
No 157
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=41.71 E-value=7.4 Score=37.93 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=19.5
Q ss_pred ccchhcccCCCCCCCcceEEEEECCCCCCHH
Q 005993 12 SKMLQLCSNLPSLWSFHCICFADNGGGMNPD 42 (666)
Q Consensus 12 a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~ 42 (666)
|+.+.+.|+. + ..+.|.|||.||+.+
T Consensus 52 ~~~I~V~i~~----~-g~i~V~DnG~Gip~~ 77 (198)
T 3ttz_A 52 ANQIEVVIEK----D-NWIKVTDNGRGIPVD 77 (198)
T ss_dssp CCEEEEEEEG----G-GEEEEEECSSCCCCS
T ss_pred CcEEEEEEeC----C-CeEEEEECCCCcccc
Confidence 5666666653 2 289999999999986
No 158
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=40.47 E-value=7.6 Score=42.10 Aligned_cols=71 Identities=20% Similarity=0.187 Sum_probs=35.5
Q ss_pred ccchhcccCCCCCCCcceEEEEECCCCCCHHH--------HHHHH---hcCCCCCC-CccccccccCCcccccccccCCe
Q 005993 12 SKMLQLCSNLPSLWSFHCICFADNGGGMNPDK--------MRHCM---SLGYSAKS-KAANTIGQYGNGFKTSTMRLGAD 79 (666)
Q Consensus 12 a~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~e--------l~~~m---sfG~s~k~-~~~~~IGrYGnGfKTgSMRLGkd 79 (666)
|+.+.+.|+. .| .+.|.|||.||+.+. +.-+| --|.+-.. .-....|.-|.|++..- .|...
T Consensus 71 ~~~I~V~i~~---dg--sI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svVN-ALS~~ 144 (408)
T 3lnu_A 71 AKQIEVTLYK---DG--SCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVN-ALSTK 144 (408)
T ss_dssp CCEEEEEECT---TS--CEEEEECSSCCCCSBCTTTCSBHHHHHHHCC--------------------CHHHHH-HTEEE
T ss_pred CceEEEEEeC---CC--eEEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCCceeecCCccccccceeh-hccCe
Confidence 5566666652 23 799999999998765 12223 12221100 11346899999998543 46678
Q ss_pred EEEEeeecC
Q 005993 80 VIVFSCCCG 88 (666)
Q Consensus 80 viVfSK~~g 88 (666)
+.|-++.+|
T Consensus 145 l~v~v~rdG 153 (408)
T 3lnu_A 145 VELFIKREG 153 (408)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEECC
Confidence 888888765
No 159
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=40.21 E-value=73 Score=29.26 Aligned_cols=8 Identities=25% Similarity=0.393 Sum_probs=3.7
Q ss_pred HHHHhHHh
Q 005993 576 RLEKKEGE 583 (666)
Q Consensus 576 ~~~~~~~~ 583 (666)
+|..+|..
T Consensus 20 ~L~~kE~q 27 (119)
T 2avr_X 20 NLANQEEA 27 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 160
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=39.94 E-value=23 Score=24.90 Aligned_cols=21 Identities=29% Similarity=0.779 Sum_probs=18.2
Q ss_pred HhhhcHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELN 609 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~ 609 (666)
.||..||..||.++++||.+.
T Consensus 8 kkcaalesklqalekkleale 28 (31)
T 3ljm_A 8 KKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999998763
No 161
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=39.92 E-value=5.6 Score=33.56 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=19.3
Q ss_pred hcccCCCCCCCcceEEEEECCCCCCHHH
Q 005993 16 QLCSNLPSLWSFHCICFADNGGGMNPDK 43 (666)
Q Consensus 16 n~~i~~~~~~G~~~L~I~DDG~GMd~~e 43 (666)
.++|.+..-.+ ..|.|.|||.||+++.
T Consensus 59 ~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 59 SLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp EEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred EEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 44444432334 7899999999999876
No 162
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=39.26 E-value=2.6e+02 Score=26.69 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=25.6
Q ss_pred HHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 576 RLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI 616 (666)
Q Consensus 576 ~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li 616 (666)
.|..++.++.+=..+++.|++.+++-.+-++.++-|-.+|-
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLq 109 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGT 109 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455444446777777777777777777766666653
No 163
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.97 E-value=2.1e+02 Score=25.42 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=26.8
Q ss_pred hhhhHHHHHHHHhHHhHHHHHHhhhcHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 005993 568 QENHELKKRLEKKEGELQEERERCRSLEAQL-------KVMQQTIEELNKEQESLIDI 618 (666)
Q Consensus 568 ~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~-------~~~~~~~~~~~keq~~li~~ 618 (666)
++...||++|...+..+..--..++.|..+| .+|++....+++|-|.|--.
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544433223333344444 45566677777787777543
No 164
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=38.01 E-value=77 Score=33.99 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=25.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 621 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e 621 (666)
|.+|++|..+|++.+..+++ ..+.++.+++++++++.+...+-..|-+.+.|
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKE-------KIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333 33445555666665555555444444444443
No 165
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=37.40 E-value=39 Score=34.99 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=39.7
Q ss_pred EeeecCcccccc--ccceeEEecCccccc----------hhhcccCCCCCCc--ceeEEEeccc------cccccccccc
Q 005993 289 IGFVKDAKHHID--VQGFNVYHKNRLIKP----------FWRLWNASGSDGR--GVIGVLEANF------VEPAHDKQGF 348 (666)
Q Consensus 289 iGflk~a~~~~~--~qGf~VYhkNRLIk~----------y~rVg~~~~s~Gr--GVIGVvEanf------lePtHNKQdF 348 (666)
-||...+...+. ...+++|-|||+|+. |....+ .|+ -++-.|+++- +.|+-.-=-|
T Consensus 239 ~G~i~~p~~~~~~~~~~~~~fvNgR~V~~~~l~~ai~~~y~~~l~----~~~~P~~~l~l~~~p~~vDvNvhP~K~ev~f 314 (333)
T 1b63_A 239 RGWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLG----ADQQPAFVLYLEIDPHQVDVNVHPAKHEVRF 314 (333)
T ss_dssp EEEEECGGGCCTTGGGCEEEEETTEECCCHHHHHHHHHHHHHHSS----SCCCCCEEEEEECCGGGEECTTSTTCCCCEE
T ss_pred EEEEEcCccccCCCCCcEEEEECCEEecCHHHHHHHHHHHHhhcc----CCCCcEEEEEEEeCchhccceECCCcCEEEe
Confidence 355544432222 468999999999975 222222 222 2344455542 5666555566
Q ss_pred chhH-HHHHHHHHHHHH
Q 005993 349 ERTT-VLARLEARLIQM 364 (666)
Q Consensus 349 e~t~-ly~rLe~rL~q~ 364 (666)
.+.. ++..+...|.+.
T Consensus 315 ~~~~~v~~~i~~~i~~~ 331 (333)
T 1b63_A 315 HQSRLVHDFIYQGVLSV 331 (333)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 6653 566666666543
No 166
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=37.02 E-value=74 Score=32.86 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 005993 625 RREREEENLRKKIKDASDTI 644 (666)
Q Consensus 625 ~~~~e~~~lr~kl~~~~~~i 644 (666)
.+.+-||.++.|.++|-.+-
T Consensus 174 k~r~~EEea~~K~eeAd~~Y 193 (279)
T 3qwe_A 174 RRRRSREEAQAKAQEAEALY 193 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHH
Confidence 34445555666777665543
No 167
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=36.81 E-value=61 Score=30.54 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=5.4
Q ss_pred hhhhhhhhhHHHHHHHHh
Q 005993 563 LGQLKQENHELKKRLEKK 580 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~ 580 (666)
.++|.++..++.++|.+.
T Consensus 19 ~~~l~~~l~~~~~~l~~~ 36 (268)
T 4ew8_A 19 SHMLQSALADRSAALAEA 36 (268)
T ss_dssp ------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 168
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=36.42 E-value=80 Score=28.51 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=17.5
Q ss_pred hhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHH
Q 005993 568 QENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIE 606 (666)
Q Consensus 568 ~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~ 606 (666)
+|-..|-+|..+.|.++.. |.+++++++++|+
T Consensus 4 ~e~~~~~~~~~~~e~e~~~-------l~~~~~el~~~l~ 35 (125)
T 1joc_A 4 DERRALLERCLKGEGEIEK-------LQTKVLELQRKLD 35 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHH
Confidence 4555566666666665433 4445555555554
No 169
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=36.32 E-value=42 Score=29.09 Aligned_cols=16 Identities=44% Similarity=0.760 Sum_probs=7.7
Q ss_pred hhhhHHHHHHHHhHHh
Q 005993 568 QENHELKKRLEKKEGE 583 (666)
Q Consensus 568 ~e~~~~~~~~~~~~~~ 583 (666)
+||..|.+++..++++
T Consensus 46 ~EN~~Lh~~ie~l~eE 61 (83)
T 1uii_A 46 KENEKLHKEIEQKDNE 61 (83)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555444443
No 170
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=36.27 E-value=17 Score=40.87 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 610 KEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDK 650 (666)
Q Consensus 610 keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~ 650 (666)
.+++-.++.+.|++.+...|.+.|.+|-.+|-..++.|...
T Consensus 359 ~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~ 399 (575)
T 2i1j_A 359 LEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEET 399 (575)
T ss_dssp HHHHHC-----------------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555567788888888888888888888877777766543
No 171
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=35.88 E-value=4e+02 Score=27.75 Aligned_cols=124 Identities=18% Similarity=0.154 Sum_probs=70.5
Q ss_pred CCCCCCCccc---CCCCCccCccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhh-------cHHHHH---------
Q 005993 538 MPSQSKGSEV---NYPEHFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCR-------SLEAQL--------- 598 (666)
Q Consensus 538 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~-------~l~~~~--------- 598 (666)
...|+..|-+ .=.+-.+|.|..++.|..+.++...|+.+|+++-....+=.+-.+ .+...|
T Consensus 18 ~~~~~~~p~~~~l~l~Ea~~DSP~FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~~~l~~~~~~~~~ 97 (407)
T 4h8s_A 18 LYFQSNAPAVDKLLLEEALQDSPQTRSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFA 97 (407)
T ss_dssp -CCCCCCCCCCCCCSTTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC
T ss_pred hhccCCCCCcCCccHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3444444433 233456677888999999999999999998887766422111111 111111
Q ss_pred ------------HHHHHHHHHHH--------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 005993 599 ------------KVMQQTIEELN--------KEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMK 658 (666)
Q Consensus 599 ------------~~~~~~~~~~~--------keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~~ 658 (666)
.....-+.++. .-+..+|+-+..=++..-.+-+.+|++++.++..-...+++.-.+.+.|
T Consensus 98 ~~~~d~~~~~~l~~f~~~~~ei~~~~~~L~~~~~~~i~~pL~~f~k~di~~~ke~kK~Fek~~~~Yd~~l~Ky~~~~k~k 177 (407)
T 4h8s_A 98 LGKGDEEVISTLHYFSKVVDELNLLHTELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGLASNEHDLSMAKYSRLPKKK 177 (407)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSTT
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 11111122222 2223333333333433445566789999999999999999988777766
Q ss_pred CCC
Q 005993 659 TPS 661 (666)
Q Consensus 659 ~~~ 661 (666)
.+.
T Consensus 178 ~~~ 180 (407)
T 4h8s_A 178 ENE 180 (407)
T ss_dssp CCH
T ss_pred Cch
Confidence 543
No 172
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=35.59 E-value=1.2e+02 Score=27.17 Aligned_cols=52 Identities=27% Similarity=0.415 Sum_probs=33.0
Q ss_pred hhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 565 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI 616 (666)
Q Consensus 565 ~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li 616 (666)
.|-+|--+|-.|+.++|++-.+=+-..+....++++++.+++.+.-|...|.
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777776544333344456677777777777766665553
No 173
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=35.52 E-value=20 Score=31.57 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=29.5
Q ss_pred ccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhc
Q 005993 556 DCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRS 593 (666)
Q Consensus 556 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~ 593 (666)
+|.+.|+++.+-+|..-+-|=|++.|-..+...+-+++
T Consensus 32 dP~lk~~L~Kig~Ei~~l~eLLn~~E~eV~~Qe~~~~s 69 (91)
T 4aj5_A 32 EPTLKTVLNKIGDEIIVINELLNKLELEIQYQEQTNNS 69 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999988887655544443
No 174
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=35.39 E-value=1.4e+02 Score=26.79 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=14.0
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHH
Q 005993 585 QEERERCRSLEAQLKVMQQTIEE 607 (666)
Q Consensus 585 ~~e~~~~~~l~~~~~~~~~~~~~ 607 (666)
+.|+.++.++|..+..+.+.+.+
T Consensus 58 E~E~~~r~~~E~di~~lrK~lD~ 80 (119)
T 3ol1_A 58 QEEMLQREEAENTLQSFRQDVDN 80 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccH
Confidence 44556666777766666665544
No 175
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=35.25 E-value=2.8e+02 Score=30.14 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhhh
Q 005993 642 DTIQDLLDKIKLLEK 656 (666)
Q Consensus 642 ~~i~~~~~~~~~~~~ 656 (666)
..+++||+.|+...-
T Consensus 428 gv~D~Ll~~l~sg~~ 442 (457)
T 3obv_E 428 GVMDSLLEALQSGAA 442 (457)
T ss_dssp CHHHHHHHHHHHSTT
T ss_pred ccHHHHHHHHhcchh
Confidence 467888888886654
No 176
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=34.66 E-value=1.1e+02 Score=25.89 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005993 611 EQESLIDIFAEERDRREREEENLRKKI 637 (666)
Q Consensus 611 eq~~li~~f~eer~~~~~e~~~lr~kl 637 (666)
+++.+|+..-.+-+.+|.|-.+|+..|
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555544
No 177
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=34.07 E-value=45 Score=27.91 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=22.8
Q ss_pred HHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 581 EGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI 616 (666)
Q Consensus 581 ~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li 616 (666)
-+++++||++||.+..+|| +|+|+|---+|
T Consensus 28 vgdiEqeLe~Ck~sIrrLE------~evn~ErFrmI 57 (72)
T 1k1f_A 28 VGDIEQELERAKASIRRLE------QEVNQERFRMI 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH------HHHhHHHHHHH
Confidence 3678889999998887776 36777766665
No 178
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=33.87 E-value=2e+02 Score=25.79 Aligned_cols=54 Identities=19% Similarity=0.120 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCc
Q 005993 602 QQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTPSI 662 (666)
Q Consensus 602 ~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~~~~~~ 662 (666)
..+|.+.-+|--.-|+.+-||| -|-|+..-+ ---.|.+|-.+|+.+.+.+-|..
T Consensus 44 ~~~L~e~~keLh~~I~~LEeEK--YDlE~kv~k-----q~yEI~eL~~rV~dlgKf~Kp~~ 97 (106)
T 1j1d_B 44 EDQLREKAKELWQTIYNLEAEK--FDLQEKFKQ-----QKYEINVLRNRINDNQKVSKTRG 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-----HHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHh-----hhHHHHHHHHHHHHhcCccCCCC
Confidence 3467777777777777776654 555554444 44469999999999977777754
No 179
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=32.26 E-value=69 Score=27.77 Aligned_cols=38 Identities=26% Similarity=0.526 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHHhHHhH---HHHHHhhhcHHHHHHHHHHHH
Q 005993 568 QENHELKKRLEKKEGEL---QEERERCRSLEAQLKVMQQTI 605 (666)
Q Consensus 568 ~e~~~~~~~~~~~~~~~---~~e~~~~~~l~~~~~~~~~~~ 605 (666)
+||..|.+++..+++++ ..|.+..+.|..+++-+-.-|
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i 78 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVI 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777663 444455555555554443333
No 180
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.18 E-value=1.6e+02 Score=25.37 Aligned_cols=12 Identities=8% Similarity=0.227 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 005993 628 REEENLRKKIKD 639 (666)
Q Consensus 628 ~e~~~lr~kl~~ 639 (666)
.|-++|++++++
T Consensus 59 ~e~~~l~~~~ee 70 (81)
T 1wt6_A 59 AHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345666666665
No 181
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=31.88 E-value=2.9e+02 Score=24.94 Aligned_cols=58 Identities=21% Similarity=0.262 Sum_probs=38.6
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 592 RSLEAQLKVMQQTIEELNKEQESLID-IFAEERDRREREEENLRKKIKDASDTIQDLLD 649 (666)
Q Consensus 592 ~~l~~~~~~~~~~~~~~~keq~~li~-~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~ 649 (666)
+..|.||-.|+|||+++++.=|-==| +=---=.+|..+...|+.||.+--.-|.|+..
T Consensus 45 ~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 45 TAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999998875321000 00001146888999999999987777766554
No 182
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=31.55 E-value=2.2e+02 Score=24.26 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=19.9
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHH-HhhhcHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEER-ERCRSLEAQLKVMQQT 604 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~-~~~~~l~~~~~~~~~~ 604 (666)
|+.+.+|...|++.|.+.+. .+.|+ +++.+|..+-.+++.+
T Consensus 16 m~~~eeel~~lke~l~k~e~-~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTER-IKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666654332 23333 4444444444444443
No 183
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.46 E-value=2e+02 Score=23.09 Aligned_cols=49 Identities=22% Similarity=0.412 Sum_probs=27.8
Q ss_pred HHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 572 ELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 621 (666)
Q Consensus 572 ~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e 621 (666)
..+.|..+++.. +.=-.+.+.|+.+-.++..+++.+.+|-..|-+++.|
T Consensus 14 A~R~R~KKk~~~-~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 14 ATRYRQKKRAEQ-EALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445565444432 1111455666666666677777777776666666544
No 184
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.44 E-value=2.6e+02 Score=25.18 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005993 596 AQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 638 (666)
Q Consensus 596 ~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~ 638 (666)
.+++.++-+|+.+.+.-.+|-...+|-..|.+.+.+.++.+|.
T Consensus 45 r~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~ 87 (131)
T 3tnu_A 45 RTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444443
No 185
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=31.05 E-value=1.9e+02 Score=32.71 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=18.1
Q ss_pred CcceEEEE-ECCC-CCCHHHHHHHHhcCCCCCCCccccccccCCc
Q 005993 26 SFHCICFA-DNGG-GMNPDKMRHCMSLGYSAKSKAANTIGQYGNG 68 (666)
Q Consensus 26 G~~~L~I~-DDG~-GMd~~el~~~msfG~s~k~~~~~~IGrYGnG 68 (666)
+.|..+|. |+|. .++++.+..+.... .+...-.-+|++|.|
T Consensus 8 ~~pv~li~~~~~~l~~~~eal~~L~~i~--~~~~~VaivG~pnvG 50 (592)
T 1f5n_A 8 TGPMCLIENTNGRLMANPEALKILSAIT--QPMVVVAIVGLYRTG 50 (592)
T ss_dssp CSCEEEEEEETTEEEECHHHHHHHHTCC--SBEEEEEEEEBTTSS
T ss_pred CCCeEEEEeCCCcEEECHHHHHHHHhcc--CCCcEEEEECCCCCC
Confidence 34444443 3332 45666554333321 111112356777766
No 186
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=30.72 E-value=31 Score=31.11 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=1.6
Q ss_pred hhhhhhhhHHHHHHHHhHHhHHH
Q 005993 564 GQLKQENHELKKRLEKKEGELQE 586 (666)
Q Consensus 564 ~~~~~e~~~~~~~~~~~~~~~~~ 586 (666)
++|+.+...+...|.+++.+|+.
T Consensus 26 ~~l~~~~~~~~~el~~~~~el~~ 48 (143)
T 1u2m_A 26 NTLENEFKGRASELQRMETDLQA 48 (143)
T ss_dssp TTTC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 187
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.56 E-value=96 Score=32.65 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=14.9
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 005993 571 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL 608 (666)
Q Consensus 571 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~ 608 (666)
+.|.++|.+.|..+..--...+.|+++|+.++.+|.++
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l 45 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRL 45 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444333322233333444444444333333
No 188
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=30.48 E-value=1.6e+02 Score=29.69 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005993 596 AQLKVMQQTIEELNKEQE 613 (666)
Q Consensus 596 ~~~~~~~~~~~~~~keq~ 613 (666)
.+|+.++.+++.+.++-+
T Consensus 84 a~l~~a~~~~~~a~~~~~ 101 (369)
T 4dk0_A 84 AQLVARKTAYDVALSNYQ 101 (369)
T ss_dssp HHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444333333
No 189
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=30.40 E-value=2.1e+02 Score=25.91 Aligned_cols=75 Identities=20% Similarity=0.337 Sum_probs=47.6
Q ss_pred hhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005993 568 QENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDL 647 (666)
Q Consensus 568 ~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~ 647 (666)
+|..+||+-|.--| .-++|-+-+.+|+.-.++++ +.++++=| .|--++.+.+-+.|..|+|+-..+|+.|
T Consensus 24 ~ELeSlK~EL~HfE----~rl~K~rH~~~el~l~~~k~----~~~~~~g~--~e~~s~~~ek~~~le~k~Kk~~~kV~Kl 93 (109)
T 2fcw_A 24 KELEAFREELKHFE----AKIEKHNHYQKQLEIAHEKL----RHAESVGD--GERVSRSREKHALLEGRTKELGYTVKKH 93 (109)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----HHHHHHTC--TTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----hhhhcccc--hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55566666555444 34467788888887665543 22233333 3344455555778899999999999887
Q ss_pred HHHHh
Q 005993 648 LDKIK 652 (666)
Q Consensus 648 ~~~~~ 652 (666)
...|.
T Consensus 94 ~~dl~ 98 (109)
T 2fcw_A 94 LQDLS 98 (109)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 190
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=30.32 E-value=2e+02 Score=26.72 Aligned_cols=68 Identities=28% Similarity=0.382 Sum_probs=40.0
Q ss_pred HhhhcHHHHH-----HH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcCCCC
Q 005993 589 ERCRSLEAQL-----KV-MQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE-KMKTPS 661 (666)
Q Consensus 589 ~~~~~l~~~~-----~~-~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~-~~~~~~ 661 (666)
+|.+-|+++. .. -+.+|.+.-+|--.-|+..-||| -|-|...-+. --.|.+|-.+|+-+. +.+-|.
T Consensus 41 eKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEK--YDlE~kvkkq-----~yEI~dL~~rV~Dl~gKfkKP~ 113 (133)
T 1j1d_C 41 EKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEER--YDIEAKVTKN-----ITEIADLTQKIFDLRGKFKRPT 113 (133)
T ss_dssp HHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-----HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHc-----chHHHHHHHHHHHHHcccCCCc
Confidence 5555555554 22 14567777778778888876664 4555544444 446999999999885 466776
Q ss_pred cc
Q 005993 662 IR 663 (666)
Q Consensus 662 ~~ 663 (666)
+|
T Consensus 114 Lk 115 (133)
T 1j1d_C 114 LR 115 (133)
T ss_dssp -C
T ss_pred cC
Confidence 65
No 191
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=30.13 E-value=15 Score=39.80 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=38.1
Q ss_pred cchhcccCCCCCCCcceEEEEECCCCCCHHH-----------HHHHHhcCCCCCC-CccccccccCCcccccccccCCeE
Q 005993 13 KMLQLCSNLPSLWSFHCICFADNGGGMNPDK-----------MRHCMSLGYSAKS-KAANTIGQYGNGFKTSTMRLGADV 80 (666)
Q Consensus 13 ~a~n~~i~~~~~~G~~~L~I~DDG~GMd~~e-----------l~~~msfG~s~k~-~~~~~IGrYGnGfKTgSMRLGkdv 80 (666)
+.+.+.|+. +...+.|.|||.||+.+. +...|--|.+-.. .-.-.-|..|.|.+.. =.|...+
T Consensus 87 ~~I~V~i~~----d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvV-NALS~~l 161 (418)
T 1pvg_A 87 KRIDVNIHA----EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLC-NIFSTEF 161 (418)
T ss_dssp CEEEEEEET----TTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHH-HHTEEEE
T ss_pred CEEEEEEEC----CCCEEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCceeccCCccceeeeee-eeccceE
Confidence 445555553 225799999999997654 2222322322110 1124679999998732 2344556
Q ss_pred EEEee
Q 005993 81 IVFSC 85 (666)
Q Consensus 81 iVfSK 85 (666)
.|-++
T Consensus 162 ~V~v~ 166 (418)
T 1pvg_A 162 ILETA 166 (418)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66666
No 192
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=29.86 E-value=1.6e+02 Score=25.09 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 629 EEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 629 e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
|-..||+=+.+|.=+--||=-||.
T Consensus 50 d~~~LrkdvD~a~l~r~dLE~kve 73 (86)
T 3swk_A 50 TLQSFRQDVDNASLARLDLERKVE 73 (86)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 334566666666555444444443
No 193
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=29.55 E-value=1.8e+02 Score=28.70 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 005993 636 KIKDASDTIQDLLDKIKL 653 (666)
Q Consensus 636 kl~~~~~~i~~~~~~~~~ 653 (666)
|-.+...-|-||++-|--
T Consensus 66 ~~~e~i~i~~DL~e~LTG 83 (190)
T 4emc_A 66 QQAENSEVIKDLYEYLCN 83 (190)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhHHHHHHHHccC
Confidence 334445566777776643
No 194
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.11 E-value=40 Score=26.67 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=16.3
Q ss_pred hhhhhhhhhhHHHHHHHHhHH
Q 005993 562 NLGQLKQENHELKKRLEKKEG 582 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~ 582 (666)
-+..|+.||.+||.|+..+.+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~ 40 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVE 40 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999987765443
No 195
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=29.07 E-value=2.2e+02 Score=23.33 Aligned_cols=41 Identities=22% Similarity=0.421 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005993 598 LKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 638 (666)
Q Consensus 598 ~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~ 638 (666)
+=.+.-+..++.+|...+--.++||...|..=|+.+|+=++
T Consensus 9 VYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k 49 (61)
T 3l4f_A 9 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444455555555555555555555555555555444
No 196
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=28.96 E-value=4.7e+02 Score=26.91 Aligned_cols=110 Identities=10% Similarity=0.144 Sum_probs=64.1
Q ss_pred CCccCccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhh-------hcHH------------------------HHHH
Q 005993 551 EHFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERC-------RSLE------------------------AQLK 599 (666)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~-------~~l~------------------------~~~~ 599 (666)
+-.+|.|..++.|+.+.++...|+.+|+++-....+=.+.- +.+. .++-
T Consensus 11 e~~~DSP~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~ 90 (385)
T 2q13_A 11 ETLEDSPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFS 90 (385)
T ss_dssp GTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHH
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHH
Confidence 34566788888899999999999999998766642211111 1111 1111
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 005993 600 VMQQTIEELN-----KEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTP 660 (666)
Q Consensus 600 ~~~~~~~~~~-----keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~~~~ 660 (666)
++.+.|+... .-+..+++-+..=++..=++-..+|++++.++..-...+++.-.+++.|.|
T Consensus 91 ~~~~ei~~~~~~l~~~~~~~~~~PL~~f~~~di~~~ke~kk~fek~~~~yd~al~k~~~~~k~k~~ 156 (385)
T 2q13_A 91 KVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKREN 156 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCch
Confidence 2222222211 111222222332333333455678999999999999999998888877655
No 197
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=28.80 E-value=3.8e+02 Score=29.14 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 005993 627 EREEENLRKKIKDASDTIQDLLDKIKLLEKM 657 (666)
Q Consensus 627 ~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~ 657 (666)
+..-..|+..|....+.|++|.++|..++.+
T Consensus 104 ~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 104 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666777788889999988888765
No 198
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=28.65 E-value=21 Score=28.39 Aligned_cols=23 Identities=9% Similarity=0.251 Sum_probs=14.8
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHh
Q 005993 561 ANLGQLKQENHELKKRLEKKEGE 583 (666)
Q Consensus 561 ~~~~~~~~e~~~~~~~~~~~~~~ 583 (666)
.-+..|.+||.+|++++..+++.
T Consensus 34 ~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 34 KDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34777888888888888877764
No 199
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=28.58 E-value=98 Score=26.72 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=8.3
Q ss_pred hhcHHHHHHHHHHHHHHH
Q 005993 591 CRSLEAQLKVMQQTIEEL 608 (666)
Q Consensus 591 ~~~l~~~~~~~~~~~~~~ 608 (666)
+..++.+|++++.+.+++
T Consensus 40 ni~~eskL~eae~rn~eL 57 (81)
T 1wt6_A 40 NQNFASQLREAEARNRDL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445444444444
No 200
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=28.42 E-value=3.2e+02 Score=25.79 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005993 613 ESLIDIFAEERDRREREEENLRKKIK 638 (666)
Q Consensus 613 ~~li~~f~eer~~~~~e~~~lr~kl~ 638 (666)
+++-.-|..||.+|..-...|.-+|+
T Consensus 76 ~~iq~q~~~ek~~r~e~k~~l~~ql~ 101 (150)
T 4dci_A 76 ANIQQQVAGKRSELEEQKRNLLQQQA 101 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888777665555554443
No 201
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=28.11 E-value=2.5e+02 Score=28.05 Aligned_cols=23 Identities=9% Similarity=-0.041 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005993 595 EAQLKVMQQTIEELNKEQESLID 617 (666)
Q Consensus 595 ~~~~~~~~~~~~~~~keq~~li~ 617 (666)
+.+++.++.+++.+.++-+..-.
T Consensus 82 ~a~l~~a~~~~~~a~~~~~r~~~ 104 (341)
T 3fpp_A 82 RAQRQQAEAELKLARVTYSRQQR 104 (341)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 202
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=28.02 E-value=2.3e+02 Score=25.71 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 005993 633 LRKKIKDASDTIQ 645 (666)
Q Consensus 633 lr~kl~~~~~~i~ 645 (666)
||.....+-+.+|
T Consensus 64 Lqq~fsq~q~~vq 76 (112)
T 1x79_B 64 LQQGLSQAKRDVQ 76 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 203
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=27.94 E-value=2.7e+02 Score=23.40 Aligned_cols=59 Identities=24% Similarity=0.445 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLK----VMQQTIEELNKEQESLIDIFAEERDRRE 627 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~----~~~~~~~~~~keq~~li~~f~eer~~~~ 627 (666)
|..|..|+.+|-++|+..++++.... +++.. ..+.+|..=.===---|+=++|==+|+|
T Consensus 8 i~~l~~E~eel~~klk~~~ee~~~~~------eee~~~~~~~lek~L~~E~~LK~QAVNKLAEIMNRKd 70 (71)
T 1s1c_X 8 IEILRRENEELTEKMKKAEEEYKLEK------EEEISNLKAAFEKNINTERTLKTQAVNKLAEIMNRKD 70 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 204
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=27.85 E-value=1.2e+02 Score=25.93 Aligned_cols=45 Identities=24% Similarity=0.313 Sum_probs=34.3
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN 609 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ 609 (666)
.+.||+-.--+.-..+..+|+.|..|.+|++.+...| .+++.+++
T Consensus 31 ~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeL---DqTL~ELn 75 (77)
T 3mtu_E 31 ALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQML---DQTLLELN 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHhh
Confidence 4788888888888888999999988888888887664 34555443
No 205
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=27.47 E-value=3e+02 Score=25.56 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=22.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 622 ERDRREREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 622 er~~~~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
.|-|+.| ...|++|++++...-|.+-...+
T Consensus 121 ~Rir~~q-~~~L~~kf~~~m~~yq~~q~~y~ 150 (180)
T 1s94_A 121 LRIRKTQ-YSTISRKFVEVMSDYNTTQIDYR 150 (180)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666655 67999999999998888744433
No 206
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=27.36 E-value=2.1e+02 Score=28.45 Aligned_cols=87 Identities=15% Similarity=0.283 Sum_probs=43.2
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHH
Q 005993 560 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDRR----EREEENLR 634 (666)
Q Consensus 560 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~~~----~~e~~~lr 634 (666)
..-|.+|+++..+|+.++++..+++.- =+|..+.+.+++.+ -++.+-++--.++|-| ||... +....+|.
T Consensus 65 ~~~l~~l~~e~~el~d~~lR~~AEfeN---~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnl--erAl~~~~~~~~~~~l~ 139 (213)
T 4ani_A 65 KAQIAELEAKLSEMEHRYLRLYADFEN---FRRRTRQEMEAAEKYRAQSLASDLLPVLDNF--ERALKIETDNEQAKSIL 139 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HHHHSCCSCCSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHhccccccHHHHH
Confidence 334556666666666666665555432 12233333444443 4455555555566666 34332 22334555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005993 635 KKIKDASDTIQDLLDKI 651 (666)
Q Consensus 635 ~kl~~~~~~i~~~~~~~ 651 (666)
.=++--.+.+.++|++.
T Consensus 140 eGvemi~k~l~~~L~k~ 156 (213)
T 4ani_A 140 QGMEMVYRSLVDALKKE 156 (213)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHC
Confidence 55555555555555543
No 207
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=27.25 E-value=62 Score=29.49 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=17.2
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 005993 582 GELQEERERCRSLEAQLKVMQQTIEELNK 610 (666)
Q Consensus 582 ~~~~~e~~~~~~l~~~~~~~~~~~~~~~k 610 (666)
..|.+++++-+.|..+++.+|.+|+.+.+
T Consensus 9 ~~l~~~~~~~~~l~~~~~~l~~~l~~~~~ 37 (182)
T 3kqg_A 9 PELKSDLEKASALNTKIRALQGSLENMSK 37 (182)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777777776665544
No 208
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=26.89 E-value=39 Score=31.40 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=27.5
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 005993 582 GELQEERERCRSLEAQLKVMQQTIEELNKEQESL 615 (666)
Q Consensus 582 ~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l 615 (666)
+-|..=+.+...|..||+++-+|+++++.+|+++
T Consensus 98 d~L~~~laqLe~ls~qL~~ls~~v~~L~~q~~~~ 131 (140)
T 3iyn_Q 98 DKLTALLAQLDSLTRELNVVSQQLLDLRQQVSAL 131 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3356666778889999999999999999887765
No 209
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=26.70 E-value=3e+02 Score=23.42 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=33.1
Q ss_pred hhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 005993 567 KQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 611 (666)
Q Consensus 567 ~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke 611 (666)
..|...+.+-+.++.+.+.++-..++.|+.+...+.+....+.-.
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888888888888888877776665555433
No 210
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=26.67 E-value=14 Score=40.23 Aligned_cols=65 Identities=22% Similarity=0.355 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhHHhHHHHH-HhhhcHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 005993 570 NHELKKRLEKKEGELQEER-ERCRSLEAQLKVMQ----QTIEELNKEQESLIDIFAEERDRREREEENLR 634 (666)
Q Consensus 570 ~~~~~~~~~~~~~~~~~e~-~~~~~l~~~~~~~~----~~~~~~~keq~~li~~f~eer~~~~~e~~~lr 634 (666)
-.+...+|+++|++++++. .+-+.-|.+|.+.+ ++.+++++..+.-+.-+-|.|.+-+.|..+++
T Consensus 328 ~~~~~~~~~~~e~~~~~~f~~~v~~~e~~l~~~e~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~ 397 (427)
T 2qag_B 328 RNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFK 397 (427)
T ss_dssp ----------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777776665 33333344443333 34455555544444444455544444444443
No 211
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=26.63 E-value=87 Score=27.91 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=35.5
Q ss_pred cCccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHH
Q 005993 554 LSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQT 604 (666)
Q Consensus 554 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~ 604 (666)
.-+.++...++-|+.....|.+++.++++.+..=++....+.+++++++++
T Consensus 81 ~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 81 AIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334445555777777777888888888777777667777777777666654
No 212
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=26.23 E-value=1.5e+02 Score=31.25 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005993 597 QLKVMQQTIEELNKEQESL 615 (666)
Q Consensus 597 ~~~~~~~~~~~~~keq~~l 615 (666)
.++++++++++++++.+.|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~ 266 (426)
T 1lrz_A 248 YIKELNEERDILNKDLNKA 266 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 213
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=25.91 E-value=1.9e+02 Score=28.16 Aligned_cols=68 Identities=28% Similarity=0.382 Sum_probs=38.6
Q ss_pred HhhhcHHHHH-----HH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcCCCC
Q 005993 589 ERCRSLEAQL-----KV-MQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE-KMKTPS 661 (666)
Q Consensus 589 ~~~~~l~~~~-----~~-~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~-~~~~~~ 661 (666)
+|.+-|+++. .. -+.+|.+.-+|--.-|+..-||| -|-|...-+. --.|.+|-.+|+-+. +.+-|.
T Consensus 41 EKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEK--YDlE~kvkkq-----dyEI~dL~~rV~DLrGKFkKP~ 113 (180)
T 1j1e_C 41 EKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEER--YDIEAKVTKN-----ITEIADLTQKIFDLRGKFKRPT 113 (180)
T ss_dssp HHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-----HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHhc-----chhHHHHHHHHHHHHhcccccc
Confidence 4555555554 22 24467777788788888877764 4555544444 446888888888885 366666
Q ss_pred cc
Q 005993 662 IR 663 (666)
Q Consensus 662 ~~ 663 (666)
+|
T Consensus 114 Lk 115 (180)
T 1j1e_C 114 LR 115 (180)
T ss_dssp --
T ss_pred hh
Confidence 54
No 214
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=25.72 E-value=1.6e+02 Score=26.72 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 005993 633 LRKKIKDASDTIQDLLDKIKL 653 (666)
Q Consensus 633 lr~kl~~~~~~i~~~~~~~~~ 653 (666)
|-..-..++.++.|+=.++|.
T Consensus 68 LER~~R~t~~SLeD~E~k~n~ 88 (111)
T 2v66_B 68 LERAKRATIVSLEDFEQRLNQ 88 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 444445567777777777664
No 215
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.56 E-value=1.2e+02 Score=32.01 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=22.5
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL 608 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~ 608 (666)
.+.|.+|...|...|...++.++.=....+++++++++++++|.++
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554333344444555555555555433
No 216
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=25.55 E-value=1.8e+02 Score=25.53 Aligned_cols=30 Identities=33% Similarity=0.324 Sum_probs=16.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 592 RSLEAQLKVMQQTIEELNKEQESLIDIFAE 621 (666)
Q Consensus 592 ~~l~~~~~~~~~~~~~~~keq~~li~~f~e 621 (666)
++++.+|.++-++|+.+..++.-+-..++|
T Consensus 58 ~s~~~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 58 ASLEPQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666655555444444433
No 217
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=25.37 E-value=68 Score=29.25 Aligned_cols=26 Identities=12% Similarity=0.372 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 596 AQLKVMQQTIEELNKEQESLIDIFAE 621 (666)
Q Consensus 596 ~~~~~~~~~~~~~~keq~~li~~f~e 621 (666)
.++.+++++|+.++|.-.-|.++|++
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ 29 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQT 29 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999975
No 218
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=25.30 E-value=5.7e+02 Score=27.38 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCC
Q 005993 638 KDASDTIQDLLDKIKLLEKMKTPS 661 (666)
Q Consensus 638 ~~~~~~i~~~~~~~~~~~~~~~~~ 661 (666)
++|...|++|-+++..+|....|+
T Consensus 97 ~~a~~e~~~l~~~l~~le~~~ll~ 120 (365)
T 1gqe_A 97 NEAVAELDALEEKLAQLEFRRMFS 120 (365)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC
Confidence 356666666666666666544443
No 219
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=25.20 E-value=1.9e+02 Score=27.30 Aligned_cols=6 Identities=33% Similarity=0.584 Sum_probs=2.2
Q ss_pred HHHHHH
Q 005993 572 ELKKRL 577 (666)
Q Consensus 572 ~~~~~~ 577 (666)
+|+.+|
T Consensus 59 el~~~l 64 (165)
T 1gs9_A 59 ELRALM 64 (165)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 220
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=24.91 E-value=6.2e+02 Score=26.55 Aligned_cols=89 Identities=12% Similarity=0.165 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHhHHhHHHHH---HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005993 567 KQENHELKKRLEKKEGELQEER---ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDT 643 (666)
Q Consensus 567 ~~e~~~~~~~~~~~~~~~~~e~---~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~ 643 (666)
++-..++.+++++.=+++..|. +....|..+|.++|+.+-.+.+.--+---..----+--|.|...-.+|++|--..
T Consensus 372 eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (471)
T 3mq9_A 372 DEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGE 451 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhh
Q 005993 644 IQDLLDKIKLLE 655 (666)
Q Consensus 644 i~~~~~~~~~~~ 655 (666)
|..|-.+|..++
T Consensus 452 ~~~~~~~~~~~~ 463 (471)
T 3mq9_A 452 ITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 221
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.87 E-value=3.1e+02 Score=23.07 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005993 615 LIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 615 li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
.+..+.+..+--+.+-+.|.++++.--..+.+|-.+|.
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555555555555555555554
No 222
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=24.86 E-value=92 Score=32.30 Aligned_cols=54 Identities=24% Similarity=0.239 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Q 005993 568 QENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKE--------QESLIDIFAEER 623 (666)
Q Consensus 568 ~e~~~~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~ke--------q~~li~~f~eer 623 (666)
++..++.++|.+.-.....|+ +.++.|++++++++++++.+.|. |+++ .|=|+|
T Consensus 167 ~~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk~~--~~~~~~ 232 (315)
T 2ve7_A 167 EMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTANKANAERLKRLQKSA--DLYKDR 232 (315)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HHHHHH
No 223
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=24.80 E-value=1.2e+02 Score=32.03 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=30.1
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 005993 561 ANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 611 (666)
Q Consensus 561 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke 611 (666)
.-++.|+++...|.+.+.+.+..+. |....+....|+.++++||+...|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~~~~~~~~~~~~~~ 296 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDIE-KRPENKKAHNKRDNLQQQLDANEQK 296 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777766663 2233345556666666666665443
No 224
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.74 E-value=77 Score=25.01 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005993 627 EREEENLRKKIKDASDTIQDLLDKIKL 653 (666)
Q Consensus 627 ~~e~~~lr~kl~~~~~~i~~~~~~~~~ 653 (666)
.+|-+.||.|+.+...++++|-.+|+.
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355666677777777777777666654
No 225
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=24.34 E-value=43 Score=33.74 Aligned_cols=21 Identities=38% Similarity=0.401 Sum_probs=11.8
Q ss_pred hhhhhhhhhHHHHHHHHhHHh
Q 005993 563 LGQLKQENHELKKRLEKKEGE 583 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~ 583 (666)
+..|++||.+||+++..++..
T Consensus 21 ~~~l~~eN~~Lk~e~~~l~~~ 41 (255)
T 2j5u_A 21 LKNTYTENQHLKERLEELAQL 41 (255)
T ss_dssp -----CTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567788898888887665543
No 226
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=24.00 E-value=4.7e+02 Score=24.79 Aligned_cols=92 Identities=21% Similarity=0.283 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN---KEQESLIDIFAEERDRREREEENLRKKIKD 639 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~---keq~~li~~f~eer~~~~~e~~~lr~kl~~ 639 (666)
+..|..|..-+-.-|+.+|.+-.+--+|-..++.++..+..+|.++. ..-+.-+..+..+-++-+-+-..-+.|.+.
T Consensus 44 ~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~ 123 (155)
T 2efr_A 44 SAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKA 123 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhh
Q 005993 640 ASDTIQDLLDKIKLL 654 (666)
Q Consensus 640 ~~~~i~~~~~~~~~~ 654 (666)
.+..+...+..|+-+
T Consensus 124 i~~eLd~tl~el~~~ 138 (155)
T 2efr_A 124 ISEEMKQLEDKVEEL 138 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
No 227
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=24.00 E-value=2.5e+02 Score=21.66 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 005993 631 ENLRKKIKDASDTIQDLLDKIK 652 (666)
Q Consensus 631 ~~lr~kl~~~~~~i~~~~~~~~ 652 (666)
.++...|+.+...|+.+-.++.
T Consensus 36 ~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 36 NEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666655554
No 228
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=23.79 E-value=57 Score=43.19 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=35.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 638 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~ 638 (666)
|+...+...+-++.|...+..|..-++|.+...++|++++++|+ +.||+-++.|+.|=.+..+.|...++
T Consensus 1852 l~~~~~~~~~k~~~l~~~~~~l~~~l~kL~e~~~~v~~l~~~l~------~~Li~~L~~E~~RW~~~~~~~~~~~~ 1921 (2695)
T 4akg_A 1852 LRALVKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLS------ISLVKSLTFEKERWLNTTKQFSKTSQ 1921 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CTTHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 44444444333344444444444444555555556666666666 78999999999999999998887766
No 229
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=23.79 E-value=4.5e+02 Score=24.50 Aligned_cols=68 Identities=22% Similarity=0.341 Sum_probs=41.8
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESL---IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 656 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~l---i~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~ 656 (666)
+++..|+.||.+|+...++++.-=+-. +.+...+=.|-..--+....|+++--..|..+...|+.++-
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 788889999988888888776643332 23333333444444445555666666666666666666553
No 230
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.33 E-value=5.8e+02 Score=27.62 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005993 630 EENLRKKIKDASDTIQDLLDKI 651 (666)
Q Consensus 630 ~~~lr~kl~~~~~~i~~~~~~~ 651 (666)
...||.-|++-...||-|=..|
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 231
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=23.18 E-value=4.3e+02 Score=24.05 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=22.9
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 585 QEERERCRSLEAQLKVMQQTIEELNKEQESLID 617 (666)
Q Consensus 585 ~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~ 617 (666)
+..+.|++.++.+++.-+..++.+++.=+.||.
T Consensus 91 ~~ll~kH~afe~El~a~~~~~~~l~~~g~~Li~ 123 (161)
T 3lbx_A 91 QGKYQKHQSLEAEVQTKSRLMSELEKTREERFT 123 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334467777777777777777777777777765
No 232
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=23.04 E-value=3.9e+02 Score=23.53 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=16.8
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHH
Q 005993 559 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEA 596 (666)
Q Consensus 559 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~ 596 (666)
|.+++..=+++-...+..|......++....+...|+.
T Consensus 10 L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~ 47 (150)
T 3ajw_A 10 LETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLID 47 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444444444444444444444333333333333
No 233
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.78 E-value=3.2e+02 Score=23.53 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=20.7
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 621 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e 621 (666)
.+...|+.+-..++.+|+.|.+|-..|-++|..
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666677776666666654
No 234
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=22.55 E-value=5.2e+02 Score=24.83 Aligned_cols=61 Identities=20% Similarity=0.295 Sum_probs=33.6
Q ss_pred hhhhhhhhhHHHHHHHHhHHhH------HHHHH-----------hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGEL------QEERE-----------RCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER 623 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~------~~e~~-----------~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer 623 (666)
|+.|.....+.+.++.+++.-+ +..++ |....++++++|++..|.+|.+-..=+..|-+.|
T Consensus 136 l~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~ln~~L~~eLp~l~~~~ 213 (251)
T 2fic_A 136 MDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSR 213 (251)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566677777777766542 11121 2223566677777777766655544444444433
No 235
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=22.44 E-value=1.9e+02 Score=26.05 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=5.5
Q ss_pred HhhhcHHHHHHHH
Q 005993 589 ERCRSLEAQLKVM 601 (666)
Q Consensus 589 ~~~~~l~~~~~~~ 601 (666)
+|.|..|.=+|++
T Consensus 46 ~KLRdIEiLcQe~ 58 (106)
T 4e61_A 46 NKLRDIEILVHTT 58 (106)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 236
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=22.44 E-value=1.4e+02 Score=25.24 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=6.8
Q ss_pred hcHHHHHHHHHHHHHHH
Q 005993 592 RSLEAQLKVMQQTIEEL 608 (666)
Q Consensus 592 ~~l~~~~~~~~~~~~~~ 608 (666)
..|..++.++++.|+++
T Consensus 59 ~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 59 QKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 237
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=22.21 E-value=1e+02 Score=31.17 Aligned_cols=31 Identities=10% Similarity=0.034 Sum_probs=14.6
Q ss_pred CccCccccchhhhhhhhhhhHHHHHHHHhHH
Q 005993 552 HFLSDCSLGANLGQLKQENHELKKRLEKKEG 582 (666)
Q Consensus 552 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 582 (666)
-.|+...+..-+.+++.+..+++..|...+.
T Consensus 61 ~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~ 91 (369)
T 4dk0_A 61 AEIDSTTQINTLNTRKAALASYQAQLVARKT 91 (369)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554444444544444444444444333
No 238
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=21.89 E-value=47 Score=38.70 Aligned_cols=67 Identities=25% Similarity=0.388 Sum_probs=31.3
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHH-----HhhhcHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEER-----ERCRSLEAQLKVMQQTIEELNKEQESL--------IDIFAEERDRRERE 629 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~-----~~~~~l~~~~~~~~~~~~~~~keq~~l--------i~~f~eer~~~~~e 629 (666)
+.+++++..++|+++...++.-..+. ++-+..++++|.++.+|+.+..||+.| |.+++|.-.+.|..
T Consensus 633 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~e~~l~~~~~~~k~l~~~~~~~fv~~l~~~~~~~~~~ 712 (771)
T 1h2v_C 633 VLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETD 712 (771)
T ss_dssp HHHHHHHHHHC-----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhcc
Confidence 45677777777777666543321111 344566788999999999999999876 44456655545444
No 239
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=21.80 E-value=5.5e+02 Score=24.85 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=11.0
Q ss_pred HhhhcHHHHHHHHHHHHHH
Q 005993 589 ERCRSLEAQLKVMQQTIEE 607 (666)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~~ 607 (666)
+..-.||.-+.+++++|++
T Consensus 143 e~kn~le~~i~~~~~~l~~ 161 (227)
T 1u00_A 143 EQKVEAARVLESLHGALAA 161 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444566666666666654
No 240
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=21.75 E-value=5.8e+02 Score=28.65 Aligned_cols=29 Identities=14% Similarity=0.215 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005993 599 KVMQQTIEELNKEQESLIDIFAEERDRRE 627 (666)
Q Consensus 599 ~~~~~~~~~~~keq~~li~~f~eer~~~~ 627 (666)
+.|++++|.+.+|-+.--..|++-++|.+
T Consensus 317 ~~Aer~~e~a~ael~~a~k~~a~~~er~~ 345 (551)
T 2b5u_A 317 EAAERNYERARAELNQANEDVARNQERQA 345 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555554444445555555555
No 241
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.51 E-value=2e+02 Score=26.38 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 005993 573 LKKRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQESL 615 (666)
Q Consensus 573 ~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~l 615 (666)
|++-|.+...--+... +..+.|..+|+++..++|.+.++-+.|
T Consensus 58 L~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 58 LMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
No 242
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=21.49 E-value=4.3e+02 Score=23.43 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=39.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 592 RSLEAQLKVMQQTIEELNKEQESLID-IFAEERDRREREEENLRKKIKDASDTIQDLLD 649 (666)
Q Consensus 592 ~~l~~~~~~~~~~~~~~~keq~~li~-~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~ 649 (666)
+..|.||-.|+|||+++++.=|-==| +=---=.+|..+...|+.||.+--.-|.|+..
T Consensus 15 ~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 15 TLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999988764321000 00001146888999999999988887777665
No 243
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=21.25 E-value=5.3e+02 Score=24.41 Aligned_cols=16 Identities=0% Similarity=-0.263 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 005993 601 MQQTIEELNKEQESLI 616 (666)
Q Consensus 601 ~~~~~~~~~keq~~li 616 (666)
-.++|++-++..++..
T Consensus 41 e~~kl~~e~~i~eas~ 56 (146)
T 2xnx_M 41 EEKKKALELAIDQASQ 56 (146)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3456666666666654
No 244
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=21.24 E-value=2.8e+02 Score=23.86 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 005993 597 QLKVMQQTIEEL 608 (666)
Q Consensus 597 ~~~~~~~~~~~~ 608 (666)
+|+++..||...
T Consensus 28 ~Lee~leKl~~V 39 (86)
T 3nr7_A 28 TLEEMLEKLEVV 39 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444554444433
No 245
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=21.16 E-value=6.4e+02 Score=28.33 Aligned_cols=76 Identities=14% Similarity=0.275 Sum_probs=34.5
Q ss_pred hhhhhhhhHHHHHHHHhH-HhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005993 564 GQLKQENHELKKRLEKKE-GELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 642 (666)
Q Consensus 564 ~~~~~e~~~~~~~~~~~~-~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~ 642 (666)
.+.++||.--.|=+.+.+ +..++|+++.|. +|.+|.+-+++.+..|....-++.+-|..-|. .-++|.+|..
T Consensus 298 qrqeee~r~~qew~~~hp~~~Aer~~e~a~a---el~~a~k~~a~~~er~~~t~~~~~~~~~~~~~----~n~~~~~~~~ 370 (551)
T 2b5u_A 298 QRQDEENRRQQEWDATHPVEAAERNYERARA---ELNQANEDVARNQERQAKAVQVYNSRKSELDA----ANKTLADAIA 370 (551)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh----hhhHHHHHHH
Confidence 333444443333333332 334555555432 33344444444444555445555554444332 4455666655
Q ss_pred HHHH
Q 005993 643 TIQD 646 (666)
Q Consensus 643 ~i~~ 646 (666)
.|.+
T Consensus 371 ~~~~ 374 (551)
T 2b5u_A 371 EIKQ 374 (551)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 5544
No 246
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=21.09 E-value=1.6e+02 Score=21.89 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=13.7
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 592 RSLEAQLKVMQQTIEELNKEQESLIDIF 619 (666)
Q Consensus 592 ~~l~~~~~~~~~~~~~~~keq~~li~~f 619 (666)
+.||..++++..+..++..|=+.|-.+.
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3455555555555555544444444333
No 247
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=20.66 E-value=1.6e+02 Score=23.16 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=18.1
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHH
Q 005993 563 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLK 599 (666)
Q Consensus 563 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~ 599 (666)
+..|+.++..|.+|=.++.+-|+.=+++...|.++|+
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555544444444444444
No 248
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=20.49 E-value=1.9e+02 Score=25.93 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCc
Q 005993 604 TIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTPSI 662 (666)
Q Consensus 604 ~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~~~~~~~~~~~~~~ 662 (666)
+|.+.-+|--.-|+.+-||| -|-|.. ++..--.|.+|-.+|+.+-+.+-|..
T Consensus 46 ~L~e~~keLh~~I~~lEeEK--YDlE~k-----v~kq~yEI~eL~~rV~dlgKfkKp~~ 97 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEK--YDFAEQ-----IKRKKYEIVTLRNRIDQAQKHSKKAG 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHH-----HHHHHHHHHHHHHHHHHTCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhHHHH-----HHhhhhHHHHHHHHHHHhcCccCCCC
Confidence 56666777777777776654 455544 44444579999999999977777754
No 249
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=20.42 E-value=3.4e+02 Score=23.13 Aligned_cols=45 Identities=27% Similarity=0.356 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005993 604 TIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLL 648 (666)
Q Consensus 604 ~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~ 648 (666)
+||..-..+..|||.==|+-+|+..|--.|-.|+-+|..--+.|+
T Consensus 31 ~LE~~c~~MgplId~kLE~iDrkh~~Lteln~~~leaL~lY~~lM 75 (77)
T 3f1i_S 31 HLEAMCHQMGPLIDEKLEDIDRKHSELSELNVKVMEALSLYTKLM 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666667889999999999999999999999999988777665
No 250
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.39 E-value=1.5e+02 Score=25.40 Aligned_cols=17 Identities=41% Similarity=0.771 Sum_probs=11.8
Q ss_pred hhhhHHHHHHHHhHHhH
Q 005993 568 QENHELKKRLEKKEGEL 584 (666)
Q Consensus 568 ~e~~~~~~~~~~~~~~~ 584 (666)
+||..|-++|..+++++
T Consensus 34 ~EN~~Lh~~ie~~~eEi 50 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEI 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67777777777766664
No 251
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=20.33 E-value=4.1e+02 Score=22.74 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=38.3
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005993 592 RSLEAQLKVMQQTIEELNKEQESLID-IFAEERDRREREEENLRKKIKDASDTIQDLLD 649 (666)
Q Consensus 592 ~~l~~~~~~~~~~~~~~~keq~~li~-~f~eer~~~~~e~~~lr~kl~~~~~~i~~~~~ 649 (666)
+..|.||-.|+|||+++++.=|-==| +=---=.+|..+...|+.||.+--.-|.|+..
T Consensus 15 ~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 15 TLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999988764321000 00001136788999999999987777766654
No 252
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=20.21 E-value=3.2e+02 Score=26.24 Aligned_cols=87 Identities=15% Similarity=0.234 Sum_probs=45.0
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005993 562 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDRREREEENLRKKIKDA 640 (666)
Q Consensus 562 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~~~~~e~~~lr~kl~~~ 640 (666)
-+..|++|..+|++++++..+++..= +|..+.+.+++.+ -++.+-++--.++|-|.--...-....++|.+=++--
T Consensus 27 ~~~~l~~e~~e~~d~~lR~~Ae~eN~---rkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~~~~~l~~Gv~m~ 103 (177)
T 3a6m_A 27 RLKAAEEELKGLKDKYLRLLADFDNY---RKRMEEELKAREREGVLKALRALLPVLDDLDRALEFAEASPESIRQGVRAI 103 (177)
T ss_dssp STTGGGGTSSSHHHHHHTTTTTTTTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhccHHHHHHHHHHH
Confidence 47788899999999999988875211 1222233333333 3455555555566665322221111133444444444
Q ss_pred HHHHHHHHHHH
Q 005993 641 SDTIQDLLDKI 651 (666)
Q Consensus 641 ~~~i~~~~~~~ 651 (666)
.+.+.++|++.
T Consensus 104 ~~~l~~~L~k~ 114 (177)
T 3a6m_A 104 RDGFFRILAGL 114 (177)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 44445555543
No 253
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.08 E-value=7.2e+02 Score=26.89 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 005993 637 IKDASDTIQDLLDKIKLLE 655 (666)
Q Consensus 637 l~~~~~~i~~~~~~~~~~~ 655 (666)
|+.--+-|.+++-+|..||
T Consensus 136 ir~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444555566666555
No 254
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=20.07 E-value=4.4e+02 Score=23.84 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=12.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHH
Q 005993 592 RSLEAQLKVMQQTIEELNKEQESL 615 (666)
Q Consensus 592 ~~l~~~~~~~~~~~~~~~keq~~l 615 (666)
..|++++++++++|+++.+..+.|
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L 107 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRL 107 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444433
Done!