Query 005994
Match_columns 666
No_of_seqs 420 out of 2331
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 16:50:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005994.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005994hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00815 sulP high affinity s 100.0 5.3E-82 1.2E-86 718.9 45.8 492 99-596 1-563 (563)
2 KOG0236 Sulfate/bicarbonate/ox 100.0 1.4E-81 3E-86 719.2 34.7 520 85-608 52-651 (665)
3 COG0659 SUL1 Sulfate permease 100.0 1.7E-77 3.6E-82 671.9 44.1 486 94-604 3-551 (554)
4 PRK11660 putative transporter; 100.0 1.1E-75 2.3E-80 667.3 44.3 471 94-603 6-566 (568)
5 PF00916 Sulfate_transp: Sulfa 100.0 1.2E-44 2.6E-49 378.7 16.3 267 154-422 7-280 (280)
6 TIGR00801 ncs2 uracil-xanthine 99.9 1.8E-24 3.9E-29 237.9 26.5 254 154-429 117-381 (415)
7 TIGR03173 pbuX xanthine permea 99.9 1E-23 2.2E-28 232.0 25.7 240 154-420 104-353 (406)
8 PRK10720 uracil transporter; P 99.9 1.4E-23 3E-28 231.2 25.8 314 117-458 47-414 (428)
9 COG2252 Xanthine/uracil/vitami 99.9 4.8E-23 1E-27 220.8 22.5 322 91-452 3-406 (436)
10 COG2233 UraA Xanthine/uracil p 99.8 5.9E-20 1.3E-24 198.5 18.7 240 154-417 127-377 (451)
11 TIGR03616 RutG pyrimidine util 99.8 1.9E-17 4E-22 182.6 22.0 229 154-417 136-379 (429)
12 PRK11412 putative uracil/xanth 99.7 8.2E-17 1.8E-21 176.6 22.4 249 154-424 124-379 (433)
13 PF01740 STAS: STAS domain; I 99.7 4.6E-17 9.9E-22 147.7 9.7 117 477-596 1-117 (117)
14 PF00860 Xan_ur_permease: Perm 99.7 7.9E-16 1.7E-20 168.5 17.1 243 154-419 113-366 (389)
15 TIGR02886 spore_II_AA anti-sig 99.6 2.7E-15 5.9E-20 133.7 10.5 102 482-597 5-106 (106)
16 cd07041 STAS_RsbR_RsbS_like Su 99.6 4.9E-15 1.1E-19 132.7 11.3 102 483-597 8-109 (109)
17 cd06844 STAS Sulphate Transpor 99.5 4.5E-14 9.7E-19 124.6 10.5 92 482-584 5-96 (100)
18 TIGR00377 ant_ant_sig anti-ant 99.4 2.7E-12 5.9E-17 114.5 9.3 99 482-594 9-107 (108)
19 TIGR00843 benE benzoate transp 99.4 3.3E-11 7.1E-16 129.8 19.2 250 154-447 127-393 (395)
20 cd07042 STAS_SulP_like_sulfate 99.3 1.9E-11 4.1E-16 108.4 11.9 99 482-590 6-104 (107)
21 PF13792 Sulfate_tra_GLY: Sulf 99.2 5.1E-12 1.1E-16 107.0 2.5 38 98-135 1-38 (84)
22 cd07043 STAS_anti-anti-sigma_f 99.2 1.1E-10 2.3E-15 102.0 10.6 90 484-585 7-96 (99)
23 PF03594 BenE: Benzoate membra 99.1 3.1E-09 6.7E-14 112.7 18.5 251 154-447 111-377 (378)
24 COG1366 SpoIIAA Anti-anti-sigm 99.0 1.8E-09 3.8E-14 98.2 11.2 88 486-584 14-101 (117)
25 PF13466 STAS_2: STAS domain 98.9 8.9E-09 1.9E-13 86.8 9.3 79 489-580 1-79 (80)
26 TIGR00834 ae anion exchange pr 98.5 9.6E-06 2.1E-10 95.6 22.8 247 154-405 476-791 (900)
27 COG3135 BenE Uncharacterized p 98.5 7E-06 1.5E-10 85.7 16.9 253 154-449 126-394 (402)
28 KOG1172 Na+-independent Cl/HCO 98.2 0.00012 2.6E-09 84.6 21.7 279 154-440 467-817 (876)
29 KOG1292 Xanthine/uracil transp 98.0 9E-05 1.9E-09 80.6 14.8 119 296-415 276-401 (510)
30 COG3113 Predicted NTP binding 97.4 0.00075 1.6E-08 58.1 8.3 83 489-584 14-96 (99)
31 PF11840 DUF3360: Protein of u 97.3 0.0051 1.1E-07 64.9 14.8 130 285-417 280-417 (492)
32 PF00955 HCO3_cotransp: HCO3- 96.9 0.00023 4.9E-09 79.9 0.0 113 292-405 339-472 (510)
33 PF11964 SpoIIAA-like: SpoIIAA 94.1 0.058 1.3E-06 47.7 4.1 105 485-601 1-108 (109)
34 COG0659 SUL1 Sulfate permease 93.3 1.3 2.9E-05 50.9 14.2 122 288-416 21-154 (554)
35 TIGR00815 sulP high affinity s 93.0 3.2 6.9E-05 48.1 16.9 113 286-404 12-142 (563)
36 PF13344 Hydrolase_6: Haloacid 86.2 1.7 3.7E-05 38.2 5.7 72 530-603 1-77 (101)
37 PRK11660 putative transporter; 85.3 14 0.0003 42.9 14.1 110 288-403 29-147 (568)
38 PF14213 DUF4325: Domain of un 83.8 5.2 0.00011 33.0 7.2 66 499-577 2-70 (74)
39 KOG3040 Predicted sugar phosph 81.1 2.3 4.9E-05 42.2 4.5 76 526-603 6-86 (262)
40 PRK09928 choline transport pro 77.2 72 0.0016 37.7 15.9 48 502-566 528-575 (679)
41 TIGR00843 benE benzoate transp 70.0 63 0.0014 35.7 12.6 103 292-397 24-143 (395)
42 TIGR03173 pbuX xanthine permea 65.8 78 0.0017 35.0 12.6 81 324-404 35-127 (406)
43 PRK10720 uracil transporter; P 64.6 1.1E+02 0.0023 34.3 13.4 84 321-404 40-136 (428)
44 TIGR00844 c_cpa1 na(+)/h(+) an 61.4 2.6E+02 0.0057 33.8 16.1 45 209-259 9-53 (810)
45 cd07019 S49_SppA_1 Signal pept 61.4 45 0.00098 33.3 8.9 69 485-565 1-76 (211)
46 cd07023 S49_Sppa_N_C Signal pe 61.4 45 0.00098 33.1 8.9 67 486-564 2-71 (208)
47 TIGR03082 Gneg_AbrB_dup membra 59.4 1.2E+02 0.0026 28.8 10.9 85 284-383 68-152 (156)
48 COG5439 Uncharacterized conser 57.9 15 0.00033 31.6 3.9 42 528-569 47-89 (112)
49 TIGR00706 SppA_dom signal pept 57.9 55 0.0012 32.6 8.7 65 486-564 2-66 (207)
50 TIGR00801 ncs2 uracil-xanthine 57.3 56 0.0012 36.4 9.5 39 366-404 97-140 (415)
51 PRK10444 UMP phosphatase; Prov 55.7 27 0.00058 35.9 6.3 73 528-602 2-79 (248)
52 PRK11412 putative uracil/xanth 54.3 3.2E+02 0.007 30.6 14.8 82 324-405 48-148 (433)
53 COG2233 UraA Xanthine/uracil p 53.8 20 0.00043 40.2 5.1 36 370-405 116-152 (451)
54 cd07022 S49_Sppa_36K_type Sign 52.9 72 0.0016 31.9 8.7 51 500-563 27-77 (214)
55 PF05145 AmoA: Putative ammoni 52.2 57 0.0012 34.9 8.3 87 285-386 47-133 (318)
56 PF10337 DUF2422: Protein of u 51.5 3.4E+02 0.0075 30.5 14.8 78 365-450 136-213 (459)
57 PF09345 DUF1987: Domain of un 51.0 45 0.00098 29.3 5.9 69 487-564 10-81 (99)
58 TIGR01452 PGP_euk phosphoglyco 50.3 33 0.00071 35.8 6.0 74 527-602 2-80 (279)
59 TIGR00705 SppA_67K signal pept 48.9 2.8E+02 0.0061 32.4 13.8 41 525-565 92-132 (584)
60 COG3180 AbrB Putative ammonia 48.6 1.4E+02 0.0031 32.3 10.3 80 285-379 80-159 (352)
61 PF00860 Xan_ur_permease: Perm 48.2 1.9E+02 0.004 31.8 11.8 82 323-404 39-136 (389)
62 TIGR00640 acid_CoA_mut_C methy 47.3 63 0.0014 29.9 6.6 64 538-604 60-127 (132)
63 TIGR01458 HAD-SF-IIA-hyp3 HAD- 47.1 34 0.00074 35.3 5.5 73 528-602 2-83 (257)
64 TIGR03616 RutG pyrimidine util 46.1 4.4E+02 0.0096 29.4 14.4 85 321-405 56-160 (429)
65 PF03594 BenE: Benzoate membra 46.1 3.4E+02 0.0073 29.8 12.8 104 292-397 8-127 (378)
66 TIGR01684 viral_ppase viral ph 45.7 55 0.0012 34.6 6.6 59 526-584 125-189 (301)
67 cd00394 Clp_protease_like Case 45.5 50 0.0011 31.1 6.0 57 488-556 1-57 (161)
68 PRK02261 methylaspartate mutas 44.8 59 0.0013 30.2 6.1 72 527-606 55-136 (137)
69 TIGR01457 HAD-SF-IIA-hyp2 HAD- 44.4 43 0.00094 34.3 5.7 73 528-602 2-79 (249)
70 PRK10949 protease 4; Provision 42.0 3E+02 0.0065 32.4 12.6 41 525-565 111-151 (618)
71 COG0647 NagD Predicted sugar p 41.2 68 0.0015 33.5 6.5 78 526-604 7-89 (269)
72 PLN02645 phosphoglycolate phos 38.9 97 0.0021 32.9 7.5 66 527-594 28-98 (311)
73 cd07021 Clp_protease_NfeD_like 36.8 1.1E+02 0.0023 29.9 6.8 61 486-562 1-61 (178)
74 COG4618 ArpD ABC-type protease 36.6 1.2E+02 0.0026 34.6 7.7 74 526-601 490-563 (580)
75 TIGR01459 HAD-SF-IIA-hyp4 HAD- 36.3 1E+02 0.0022 31.3 6.9 71 526-598 7-82 (242)
76 KOG2882 p-Nitrophenyl phosphat 34.2 84 0.0018 33.2 5.8 78 526-604 21-103 (306)
77 PF01102 Glycophorin_A: Glycop 33.1 60 0.0013 29.7 4.0 27 429-456 67-93 (122)
78 COG0733 Na+-dependent transpor 32.9 3.7E+02 0.008 30.2 10.8 94 290-399 214-310 (439)
79 cd07018 S49_SppA_67K_type Sign 32.4 1.5E+02 0.0032 29.9 7.2 54 499-564 30-83 (222)
80 cd03412 CbiK_N Anaerobic cobal 32.3 1.6E+02 0.0036 26.8 6.9 55 541-603 12-68 (127)
81 cd02071 MM_CoA_mut_B12_BD meth 31.7 1.4E+02 0.0031 26.8 6.3 65 528-600 52-120 (122)
82 TIGR00831 a_cpa1 Na+/H+ antipo 31.1 8.3E+02 0.018 28.0 13.9 17 243-259 21-37 (525)
83 PRK11475 DNA-binding transcrip 31.0 1.2E+02 0.0025 30.3 6.1 71 528-600 39-112 (207)
84 TIGR00705 SppA_67K signal pept 30.7 2.5E+02 0.0054 32.8 9.6 71 483-565 307-384 (584)
85 PF03956 DUF340: Membrane prot 30.3 58 0.0013 32.2 3.8 58 385-442 23-81 (191)
86 PHA03398 viral phosphatase sup 28.9 1.3E+02 0.0029 31.8 6.3 59 526-584 127-191 (303)
87 PRK10949 protease 4; Provision 28.7 2.8E+02 0.006 32.7 9.5 70 483-564 325-401 (618)
88 cd07014 S49_SppA Signal peptid 28.7 2.6E+02 0.0057 26.8 8.1 54 499-564 23-76 (177)
89 KOG1288 Amino acid transporter 28.2 1.9E+02 0.0042 34.2 7.7 25 161-185 137-161 (945)
90 COG1433 Uncharacterized conser 27.7 1.5E+02 0.0033 27.0 5.7 48 551-601 57-105 (121)
91 COG0616 SppA Periplasmic serin 27.6 2.4E+02 0.0053 30.1 8.2 66 485-563 60-132 (317)
92 COG1121 ZnuC ABC-type Mn/Zn tr 27.1 1.3E+02 0.0027 31.2 5.7 42 527-569 158-199 (254)
93 COG3817 Predicted membrane pro 27.1 7.3E+02 0.016 25.8 11.0 103 117-234 10-120 (313)
94 PRK11778 putative inner membra 26.8 2.7E+02 0.006 30.0 8.3 72 483-565 89-160 (330)
95 PF14362 DUF4407: Domain of un 26.7 3.2E+02 0.0069 28.8 8.9 63 381-451 38-103 (301)
96 PF02579 Nitro_FeMo-Co: Dinitr 26.5 1.4E+02 0.003 25.0 5.1 48 551-601 45-93 (94)
97 COG3715 ManY Phosphotransferas 26.5 1.7E+02 0.0036 30.5 6.3 64 321-385 51-114 (265)
98 PRK03655 putative ion channel 26.2 4.4E+02 0.0096 29.3 10.2 74 327-404 330-404 (414)
99 PF03818 MadM: Malonate/sodium 26.1 1.8E+02 0.004 23.1 4.9 20 243-262 38-57 (60)
100 COG1817 Uncharacterized protei 25.0 1.8E+02 0.0039 31.1 6.3 68 530-603 3-73 (346)
101 PRK02509 hypothetical protein; 23.7 1.5E+03 0.032 28.2 15.2 13 246-258 192-204 (973)
102 COG4129 Predicted membrane pro 23.6 1.2E+02 0.0026 32.7 5.0 52 357-414 8-59 (332)
103 COG1509 KamA Lysine 2,3-aminom 23.4 7.1E+02 0.015 27.2 10.5 108 481-602 185-311 (369)
104 PF00072 Response_reg: Respons 22.6 4E+02 0.0086 22.3 7.4 70 496-585 28-99 (112)
105 cd07015 Clp_protease_NfeD Nodu 22.4 2.3E+02 0.0049 27.5 6.2 61 486-562 1-61 (172)
106 COG1030 NfeD Membrane-bound se 22.0 3E+02 0.0065 30.8 7.6 66 484-565 26-91 (436)
107 PRK12600 putative monovalent c 21.1 1.6E+02 0.0034 25.6 4.3 27 291-317 60-86 (94)
108 PTZ00445 p36-lilke protein; Pr 20.6 1.8E+02 0.0039 29.4 5.1 47 526-572 42-104 (219)
109 TIGR01662 HAD-SF-IIIA HAD-supe 20.3 1.9E+02 0.0042 25.9 5.1 36 546-581 28-73 (132)
110 PF03616 Glt_symporter: Sodium 20.2 8.7E+02 0.019 26.5 10.9 35 225-259 15-49 (368)
111 PF01566 Nramp: Natural resist 20.1 9.6E+02 0.021 25.7 11.3 31 157-189 49-79 (358)
112 TIGR00955 3a01204 The Eye Pigm 20.0 4.6E+02 0.01 30.7 9.3 74 528-603 186-261 (617)
No 1
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=100.00 E-value=5.3e-82 Score=718.91 Aligned_cols=492 Identities=45% Similarity=0.717 Sum_probs=444.7
Q ss_pred cccccccCCCcchhhhhhhhhHHHHHHHhhhcccccc------ccc--------------ccCCh---------------
Q 005994 99 PCSRWIRTYKWREYFQVDLMAGTTVGIMLVPQLLSWQ------PNK--------------FSTCS--------------- 143 (666)
Q Consensus 99 p~~~wl~~y~~~~~l~~D~~AGitv~~~~iPq~maya------Pi~--------------fGsS~--------------- 143 (666)
|+++|+++|++ +++++|++||+|++++++||+|||| |.| ||+|+
T Consensus 1 p~~~wl~~y~~-~~l~~Di~aGltv~~~~iP~~~ayA~laglpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~ 79 (563)
T TIGR00815 1 PVLRWLPHYRL-KKFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLG 79 (563)
T ss_pred ChhhhhhhCCH-HHhhhHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHH
Confidence 78999999996 5899999999999999999999999 433 88883
Q ss_pred --------------hh----HHHHHhhc-----------ceeEEecccchhHHHHHHHhHHHHHHHhhhhHHhCcccC-C
Q 005994 144 --------------TF----STLSFCHG-----------VWWIKYYSIYHAVISGFTTASAIVIALSQAKYFLGYDVA-R 193 (666)
Q Consensus 144 --------------~~----~~la~l~G-----------G~l~~~~~ip~~Vi~Gf~~gigl~I~~~ql~~~~G~~~~-~ 193 (666)
++ .++++++| |++++| +|+||+.||++|+|++|+.+|+++++|++.+ .
T Consensus 80 ~~v~~~~~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~--is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~~ 157 (563)
T TIGR00815 80 SVIARVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEF--LSHAVISGFMTGAAITIGLSQLKGLLGISIFNT 157 (563)
T ss_pred HHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 11 36677777 999999 9999999999999999999999999999763 3
Q ss_pred CCccHHHHHHHHhhcCCC---CchhHHHHHHHHHHHHHHHHhhhhhhhhhhhcchhhHHHHHHHHHhhhhcC--CCccee
Q 005994 194 SSKIVPLIKSIILGADKF---SWPPFLVGSIILAILLIMKQLGKSRKYLRFLRAAGPLTGVVLGTTIVKIYH--PPSITL 268 (666)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~---~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~~~p~~Li~vv~gt~~~~~~~--~~~v~~ 268 (666)
..++.+.+...+.++++. ||++++++++++++++..++++++.++..+..+|.+|+++++++++++.++ ..++.+
T Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~~~~~~~ 237 (563)
T TIGR00815 158 RTDTLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFLLYTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHKKQGVSI 237 (563)
T ss_pred CCChHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccCCCCeEE
Confidence 345566666677777666 999999999999999988888776554333456889999999998887653 447889
Q ss_pred eeccCCCCCCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHhhhhhhhhhccCCCCccc
Q 005994 269 VGDIPQGLPNFSIP-KSFECAMSLIPTAILITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANILGSFFSAYPTTG 347 (666)
Q Consensus 269 vg~ip~glp~~~~P-~~~~~~~~ll~~a~~ia~v~~~es~~~~~~~a~~~~~~~d~nrEL~a~GlaNi~sglfGg~P~~~ 347 (666)
+|++|.++|.+.+| .+++.+..+++.++++++++++|++++++++++++|+++|+||||+++|++|+++|+|||+|+++
T Consensus 238 ~g~ip~g~p~~~~~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~ 317 (563)
T TIGR00815 238 LGHIPSGLSFFPPITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPATG 317 (563)
T ss_pred EeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHhhHHHHHHHHhCccCCCC
Confidence 99999999888777 46889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhcCCccchHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHHhhccCHHHHHHHHhcCccCeeehhhhh
Q 005994 348 SFSRSAVNHESGAKTGLSGVITGIIMACALLFMTPLFEHIPQCALAAIVVSAVMGLVDYDEAIFLWHVDKKDFLLWTITS 427 (666)
Q Consensus 348 s~srSav~~~sGarT~la~iv~g~~~ll~ll~l~~ll~~IP~avLaaili~~~~~li~~~~~~~l~~~~~~d~~i~~~t~ 427 (666)
+++||++|+++|+|||++++++|+++++++++++|+++++|+++||+++++++++|+++++++.+||.++.|+++|++|+
T Consensus 318 s~srs~~~~~~G~~t~~a~i~~~~~~l~~~l~~~~~l~~iP~~~la~ili~~~~~l~~~~~~~~~~~~~~~d~~i~~~~~ 397 (563)
T TIGR00815 318 SLSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLIDYKELYKLWKADKMDFVVWLVTF 397 (563)
T ss_pred cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhcccCHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHhcCcceEEeeccCCCcccccCccCCCccccCcEEEEEeccceeeccHHHHHHHH
Q 005994 428 ITTLFLGIEIGVLVGVGASLAFVIHESANPHIAILGRLPGTTVYRNTQQYPEAYTYHGIVIVRIDAPIYFANISFLKDRL 507 (666)
Q Consensus 428 ~~~l~~~l~~Gi~vGi~~sl~~~l~~~~~p~~~~lg~~~~t~~~r~~~~~~~~~~~~~i~Iirl~G~L~F~na~~l~~~l 507 (666)
++|+++|++.|+++|+++|++.+++|+++|+..+++++++++.|||.+++++.++.+++.|+|++|+|+|+|++++++++
T Consensus 398 ~~~~~~~~~~Gi~vGv~~s~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~I~r~~g~L~F~na~~~~~~l 477 (563)
T TIGR00815 398 FGVVFTSIEIGLLVGVALSAAFLLLRIARPRGAVLGRVPGTEVYRSIKQYPNARPPPGILVYRVDGPLYFANAEDLKDRL 477 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeeecCCCCcccchhhCcccCCCCCEEEEEcCCceEeCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888999999999999999999999999
Q ss_pred HHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCChhHHHHHHhcCCccccCCe
Q 005994 508 REYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLNHEVLLTLSKSGVVDLIGKE 587 (666)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~~~v~~~L~~~Gl~~~i~~~ 587 (666)
++.+++..+. +.+.++++.+|+||++++++|+||+++|.++.++++++|++++++++++++++.|+++|+.+.++++
T Consensus 478 ~~~~~~~~~~---~~~~~~~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~ 554 (563)
T TIGR00815 478 LKRIEDETRR---ELERPPLQVVILDMSAVPHLDTSGIHALEELRKELKARGIQLLLANPNKAVRSTLKRGGLVELIGEE 554 (563)
T ss_pred HHHHhhhccc---cccCCCceEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEecCChHHHHHHHHCCchhhcCCc
Confidence 8876532211 1111246899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCHHHH
Q 005994 588 WYFVRAHDA 596 (666)
Q Consensus 588 ~~f~s~~~A 596 (666)
++|+|+|||
T Consensus 555 ~~f~s~~~A 563 (563)
T TIGR00815 555 HFFPSVSDA 563 (563)
T ss_pred ceeCChhhC
Confidence 999999986
No 2
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-81 Score=719.17 Aligned_cols=520 Identities=38% Similarity=0.644 Sum_probs=458.1
Q ss_pred cccccHHHHHhccccccccccCCCcchhhhhhhhhHHHHHHHhhhcccccc------ccc--------------ccCCh-
Q 005994 85 FKRMTWIQWIETFLPCSRWIRTYKWREYFQVDLMAGTTVGIMLVPQLLSWQ------PNK--------------FSTCS- 143 (666)
Q Consensus 85 ~~~~~~~~~~~~~~p~~~wl~~y~~~~~l~~D~~AGitv~~~~iPq~maya------Pi~--------------fGsS~- 143 (666)
|+++++.+++.+++|+++|+|+|+||+|+..|++||+|+|++++||+|||| |+| ||+|+
T Consensus 52 ~~~~~~~~~l~~~~Pil~Wlp~Y~~~~~l~~DliaGltvg~l~VPQ~iaYa~la~lppiyGLYssf~~~~iY~~fGtsr~ 131 (665)
T KOG0236|consen 52 CSSNKFLRSLLSLLPILEWLPKYSLKEWLLGDLIAGLTVGSLSVPQGLAYALLAGLPPIYGLYSSFFPPLIYAIFGTSRH 131 (665)
T ss_pred ccHHHHHHHHHhhccHhhhhhcCCchhhchHHHhcCceeeeeecchHHHHHHHcCCChHHHHHHHHHHHHHheeccCCCc
Confidence 445678899999999999999999989999999999999999999999999 555 89993
Q ss_pred ------------------------------hh-----HHHHHhhc-----------ceeEEecccchhHHHHHHHhHHHH
Q 005994 144 ------------------------------TF-----STLSFCHG-----------VWWIKYYSIYHAVISGFTTASAIV 177 (666)
Q Consensus 144 ------------------------------~~-----~~la~l~G-----------G~l~~~~~ip~~Vi~Gf~~gigl~ 177 (666)
.+ .+++|++| |++++| +|++++.||++|+|++
T Consensus 132 isiG~~av~sLmv~~~v~~~v~~~~~~~~~~~~i~va~~lt~l~Giiq~~mG~lrLGfl~~~--lS~~~l~GFt~gaa~~ 209 (665)
T KOG0236|consen 132 VSIGPFAVVSLMVGTVVSQVVLSEAPSNDIATTIQVATTLTFLTGIIQLILGLLRLGFLVRF--LSEPALSGFTTGAALH 209 (665)
T ss_pred ccccHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhcChHHHH--ccHHHHhHhhhhhhhh
Confidence 01 56778887 999999 9999999999999999
Q ss_pred HHHhhhhHHhCcc-cCCCCccHHHHH---HHHhhcCCCCchhHHHHHHHHHHHHHHHHhhh-hhhhhhhhcchhhHHHHH
Q 005994 178 IALSQAKYFLGYD-VARSSKIVPLIK---SIILGADKFSWPPFLVGSIILAILLIMKQLGK-SRKYLRFLRAAGPLTGVV 252 (666)
Q Consensus 178 I~~~ql~~~~G~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~~-~~~~~~~~~~p~~Li~vv 252 (666)
++.+|++.++|++ .+++.+....+. ....+..+. +.+++++++++++++..|.+.+ ..+++++..+|.++++++
T Consensus 210 I~~sQlk~llGi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~L~~~k~~~~~~~~k~~~v~~~~~li~vI 288 (665)
T KOG0236|consen 210 IVTSQLKVLLGITSFPRHSGPGSIVFIVFDLLANLPKT-LATLVLSLIFLVVLLLTKELNPKFKKKLFSVPIPFELIVVI 288 (665)
T ss_pred hhHHhhHhhccccccCCCCCceeEEEeeHHhhhccccc-chhhhhHHHHHHHHHHHHHhhhhhcccceeecccHHHHHHH
Confidence 9999999999998 555544333222 222222222 6789999999999999985443 334444466778899999
Q ss_pred HHHHhhhhcCCC---cceeeeccCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHH
Q 005994 253 LGTTIVKIYHPP---SITLVGDIPQGLPNFSIPKSFECAMSLIPTAILITGVAILESVGIAKALAAKNGYELDSNQELFG 329 (666)
Q Consensus 253 ~gt~~~~~~~~~---~v~~vg~ip~glp~~~~P~~~~~~~~ll~~a~~ia~v~~~es~~~~~~~a~~~~~~~d~nrEL~a 329 (666)
++|++++.++.. ...+++++|.|+|++++|. ++.+..+++.++++++++++|+++++|+++++++|++|+||||+|
T Consensus 289 i~T~~~~~~~~~~~~~~~~~~~i~~g~~~~~lp~-~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiA 367 (665)
T KOG0236|consen 289 IGTLISYIFRLEGRYGPIIVGEIPRGFPPPSLPP-LSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIA 367 (665)
T ss_pred HHHHHHHHhccccccCCeeeccCCCCCCCCCCCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHH
Confidence 999999987654 3456679999999999994 566668899999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCCCcccccchhhhhhhcCCccchHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHHhh-ccCHHH
Q 005994 330 LGVANILGSFFSAYPTTGSFSRSAVNHESGAKTGLSGVITGIIMACALLFMTPLFEHIPQCALAAIVVSAVMG-LVDYDE 408 (666)
Q Consensus 330 ~GlaNi~sglfGg~P~~~s~srSav~~~sGarT~la~iv~g~~~ll~ll~l~~ll~~IP~avLaaili~~~~~-li~~~~ 408 (666)
+|++|++||||+++|+|++++||++|.++|+|||++++++++++++++++++|++++||+|+||+|++.++++ ++++++
T Consensus 368 lG~~Ni~sSff~~~p~tgs~sRSav~~~sG~~T~~s~i~~~~~vl~~l~~l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~ 447 (665)
T KOG0236|consen 368 LGISNILSSFFGCYPTTGSFSRSAVNIKSGGRTQVAGIVSAALVLLALLFLGPLFYYIPKCVLAAIIISALIGMLIQLED 447 (665)
T ss_pred HHHHHHhhhhhceEcccchhhHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 679999
Q ss_pred HHHHHhcCccCeeehhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHhcCcceEEeeccCCCcccccCccCCCccccCcEEE
Q 005994 409 AIFLWHVDKKDFLLWTITSITTLFLGIEIGVLVGVGASLAFVIHESANPHIAILGRLPGTTVYRNTQQYPEAYTYHGIVI 488 (666)
Q Consensus 409 ~~~l~~~~~~d~~i~~~t~~~~l~~~l~~Gi~vGi~~sl~~~l~~~~~p~~~~lg~~~~t~~~r~~~~~~~~~~~~~i~I 488 (666)
++.+||.+|.|+++|+.|++.+++++++.|+++|+++|+++++.|+++|+...+|++++++.|++.++|++.++.+++.|
T Consensus 448 ~~~lwr~~k~D~~~~~~t~~~~i~~~ve~Glligv~~s~~~ii~~~~~p~~~~l~~~~~t~~~~~~~~y~~~~~~~gi~i 527 (665)
T KOG0236|consen 448 LKPLWRLSKIDLLIWVVTFFTTIFLSLEIGLLIGVAFSLFFIILRSQRPRISLLGRIPRTNIYRDINQYRELKEIPGIKI 527 (665)
T ss_pred hhhheeCCHHHHHHHHHHhheeeEehhhhhHHHHHHHHHHHHHHHhcCcchhhhcccCCCccccchhhcchhhccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccceeeccHHHHHHHHH--Hhhhhc--ccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEE
Q 005994 489 VRIDAPIYFANISFLKDRLR--EYEVDV--DRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAI 564 (666)
Q Consensus 489 irl~G~L~F~na~~l~~~l~--~~~~~~--~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~l 564 (666)
+|+++|++|+|.+.+++++. +...+. .....+..+.++.+.+|+||++++++|++|+.+|+++.++++++++++++
T Consensus 528 ~r~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vild~s~v~~iD~~g~~~L~~l~~~~~~~~i~~~~ 607 (665)
T KOG0236|consen 528 FRISSPLLFGNVESFEKKLERLKYLRKEEVLENSARELHENSIHSVILDCSGVSFIDTSGASALKSLFKDLKTRGVQVLL 607 (665)
T ss_pred EEeccceeeccHHHHHHHHHHHHhhhhcccccCcccccccCcceEEEEECCccchhhHHHHHHHHHHHHHHHhcCcEEEE
Confidence 99999999999999999773 222221 11111111112378999999999999999999999999999999999999
Q ss_pred EeCChhHHHHHHhcCCccccCCeeeecCHHHHHHHHHHhhhhcc
Q 005994 565 SNLNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCLQHVQSLK 608 (666)
Q Consensus 565 a~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae~~l~~~~ 608 (666)
+|+++++++.|++.++.+.++++++|.+++||++.|+.++....
T Consensus 608 ~n~~~~v~~~l~~~~~~~~~~~~~~f~tv~~av~~~~~~~~~~~ 651 (665)
T KOG0236|consen 608 ANCPSSVREKLSKAGFFDFIGKDNLFLSVHDAVLDAVSELSRGT 651 (665)
T ss_pred eCCCHHHHHHHHhhccccccchhhhhccHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999998877644
No 3
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-77 Score=671.89 Aligned_cols=486 Identities=33% Similarity=0.539 Sum_probs=443.8
Q ss_pred HhccccccccccCCCcchhhhhhhhhHHHHHHHhhhcccccc------ccc--------------ccCCh----------
Q 005994 94 IETFLPCSRWIRTYKWREYFQVDLMAGTTVGIMLVPQLLSWQ------PNK--------------FSTCS---------- 143 (666)
Q Consensus 94 ~~~~~p~~~wl~~y~~~~~l~~D~~AGitv~~~~iPq~maya------Pi~--------------fGsS~---------- 143 (666)
+.+++|..+|.++|. ++|+++|++||+|+|++++||+|||| |+| ||+|+
T Consensus 3 ~~~~~~~~~~~~~~~-~~~l~~Dl~AGltva~valP~ama~a~~aGv~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~ 81 (554)
T COG0659 3 LRSEIPTLKWLPYYF-RSWLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEAGLYASIVAGIIYALFGGSRGLISGPTGAF 81 (554)
T ss_pred chhhccHHHhccccc-hhhhHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccceeccchhh
Confidence 455799999999999 56899999999999999999999999 544 89883
Q ss_pred ------------hh-----HHHHHhhc-----------ceeEEecccchhHHHHHHHhHHHHHHHhhhhHHhCcccCCCC
Q 005994 144 ------------TF-----STLSFCHG-----------VWWIKYYSIYHAVISGFTTASAIVIALSQAKYFLGYDVARSS 195 (666)
Q Consensus 144 ------------~~-----~~la~l~G-----------G~l~~~~~ip~~Vi~Gf~~gigl~I~~~ql~~~~G~~~~~~~ 195 (666)
++ .++++++| |++++| +|+||+.||++|+|++|+.+|++.++|++...+.
T Consensus 82 ~~v~a~~i~~~~~~g~~~~~~~tllaGv~~i~~G~lRLG~li~f--ip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~~~~ 159 (554)
T COG0659 82 AVVLAAVIASLVETGLALAFLATLLAGVFQILLGLLRLGRLIRF--IPRPVLIGFTAGIAILIILTQLPVLLGLASKVSG 159 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--ccHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 11 45666777 999999 9999999999999999999999999999865433
Q ss_pred ccHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHhhhhhhhhhhhcchhhHHHHHHHHHhhhhcCCCc--c-eeeecc
Q 005994 196 KIVPLIKSIILGADKFSWPPFLVGSIILAILLIMKQLGKSRKYLRFLRAAGPLTGVVLGTTIVKIYHPPS--I-TLVGDI 272 (666)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~~~p~~Li~vv~gt~~~~~~~~~~--v-~~vg~i 272 (666)
+...+..++....++||.+++++++++++++.++++.+ ++|+++++++++|.+++.++... + ++.|++
T Consensus 160 -~~~~~~~l~~~~~~~~~~~~~lg~~~l~il~~~~~~~~--------~~P~~liaiv~~t~i~~~~~~~~~~~G~i~~~l 230 (554)
T COG0659 160 -FWAKVSALFTVLLTINLATLLLGLLTLAILLFLPRLTP--------RIPSPLIALVLGTLIVWIFPLDSLRYGEIPGSL 230 (554)
T ss_pred -hHHHHHHHHHhcccccHHHHHHHHHHHHHHHHccchhh--------hCCcHHHHHHHHHHHHHHhcCCchhcccCcccC
Confidence 66777788889999999999999999999999988764 57899999999999999876542 3 478899
Q ss_pred CCCCCCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHhhhhhhhhhccCCCCcccccch
Q 005994 273 PQGLPNFSIP-KSFECAMSLIPTAILITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANILGSFFSAYPTTGSFSR 351 (666)
Q Consensus 273 p~glp~~~~P-~~~~~~~~ll~~a~~ia~v~~~es~~~~~~~a~~~~~~~d~nrEL~a~GlaNi~sglfGg~P~~~s~sr 351 (666)
|.++|.+.+| .+++.+..+++.++++++++++|++.++++++.++|+++|+||||+|||++|+++|+|||+|+||+++|
T Consensus 231 p~~~~~~~~P~~~~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~~~d~nrELiaqGiaNi~sglfgg~p~~g~~sr 310 (554)
T COG0659 231 PSGLPHFRLPNVSLSLLLALLPYALALALLGLLESLLTAVSFDGMTGTKHDSNRELIAQGIANIASGLFGGIPATGSISR 310 (554)
T ss_pred CcCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHhhHHHHHHHHhCCccccchhHH
Confidence 9999999988 468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCccchHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHHhhccCHHHHHHHHh-cCccCeeehhhhhhHH
Q 005994 352 SAVNHESGAKTGLSGVITGIIMACALLFMTPLFEHIPQCALAAIVVSAVMGLVDYDEAIFLWH-VDKKDFLLWTITSITT 430 (666)
Q Consensus 352 Sav~~~sGarT~la~iv~g~~~ll~ll~l~~ll~~IP~avLaaili~~~~~li~~~~~~~l~~-~~~~d~~i~~~t~~~~ 430 (666)
|++|.++|||||+|++++|+++++++++++|++++||+|+|++++++++++|++++.++.++| ..+.|+.++++|++++
T Consensus 311 S~~nv~sGarT~lsgi~~a~~lll~l~~~~~~~~~IP~a~Laavli~v~~~l~~~~~~~~~~~~~~~~e~~v~~~t~~~t 390 (554)
T COG0659 311 SAINIKSGARTRLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLDWSLLKPLLRKLPRGELLVLLTTALLT 390 (554)
T ss_pred HHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998554 8899999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHhcCcceEEeeccCCCcccccCccCCCccccCcEEEEEeccceeeccHHHHHHHHHHh
Q 005994 431 LFLGIEIGVLVGVGASLAFVIHESANPHIAILGRLPGTTVYRNTQQYPEAYTYHGIVIVRIDAPIYFANISFLKDRLREY 510 (666)
Q Consensus 431 l~~~l~~Gi~vGi~~sl~~~l~~~~~p~~~~lg~~~~t~~~r~~~~~~~~~~~~~i~Iirl~G~L~F~na~~l~~~l~~~ 510 (666)
+++|++.||.+|+++|++++++|.++|+...+++.++.+. ++.++++..+..+++.+||++||++|+|++++++++.+.
T Consensus 391 v~~~l~~GV~vGi~ls~~~~i~r~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~ri~gplfF~~~~~~~~~i~~~ 469 (554)
T COG0659 391 VFFDLVIGVVVGILLACLLFIRRISRPSIVVLGRVPGPAG-SDNALKPLDEIGPGVLVYRLSGPLFFGNADRLERALLGL 469 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHhhccCCCccc-ccccccccccCCCCeEEEEecCceEEeeHHHHHHHHHHH
Confidence 9999999999999999999999999999988888877654 556667777888999999999999999999999999987
Q ss_pred hhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCChhHHHHHHhcCCccccCCeeee
Q 005994 511 EVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLNHEVLLTLSKSGVVDLIGKEWYF 590 (666)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~~~v~~~L~~~Gl~~~i~~~~~f 590 (666)
+++ +.+.+++|+++++++|.|+.++|+++.++++++|+++++++.+.++++.+++.|..+..+.+++|
T Consensus 470 ~~~------------~~~~~il~~~~v~~iD~ta~~al~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~i~~~~~f 537 (554)
T COG0659 470 IEE------------RPERVILDLKSVPYIDASAAEALEDLIKELERRGIQLLIVGLSAQVLRLLRRAGLLYLVGAEHIF 537 (554)
T ss_pred Hhc------------cCCEEEEEcccCCcCChhHHHHHHHHHHHHHHcCCEEEEeccchhhHHHHHHhcccccccccccc
Confidence 653 24689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHhh
Q 005994 591 VRAHDAVQVCLQHV 604 (666)
Q Consensus 591 ~s~~~Al~~ae~~l 604 (666)
+++++|++.+....
T Consensus 538 ~~~~~a~~~~~~~~ 551 (554)
T COG0659 538 DSVDSALEKARKLL 551 (554)
T ss_pred chhHHHHHHHHHHh
Confidence 99999999876543
No 4
>PRK11660 putative transporter; Provisional
Probab=100.00 E-value=1.1e-75 Score=667.35 Aligned_cols=471 Identities=26% Similarity=0.447 Sum_probs=415.6
Q ss_pred Hhccccccc-----cccCCCcchhhhhhhhhHHHHHHHhhhcccccc------ccc--------------ccCCh-----
Q 005994 94 IETFLPCSR-----WIRTYKWREYFQVDLMAGTTVGIMLVPQLLSWQ------PNK--------------FSTCS----- 143 (666)
Q Consensus 94 ~~~~~p~~~-----wl~~y~~~~~l~~D~~AGitv~~~~iPq~maya------Pi~--------------fGsS~----- 143 (666)
+.++.|.+. |+++|++ +++++|++||+|++++++||+|||| |+| ||+|+
T Consensus 6 ~~~~~~~~~~~~~~wl~~y~~-~~l~~D~iAGltv~~~~iPq~mayA~lag~pp~~GLysa~~~~~vyal~Gss~~~~~G 84 (568)
T PRK11660 6 LFSVRPFSALIDACWKEKYTA-ARFTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVSG 84 (568)
T ss_pred hHhhHhhhhHHHHHHHhcCCH-HhhhHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCcccC
Confidence 344455544 9999995 6999999999999999999999999 444 89884
Q ss_pred --------------hh-----HHHHHhhc-----------ceeEEecccchhHHHHHHHhHHHHHHHhhhhHHhCcccCC
Q 005994 144 --------------TF-----STLSFCHG-----------VWWIKYYSIYHAVISGFTTASAIVIALSQAKYFLGYDVAR 193 (666)
Q Consensus 144 --------------~~-----~~la~l~G-----------G~l~~~~~ip~~Vi~Gf~~gigl~I~~~ql~~~~G~~~~~ 193 (666)
++ ..+++++| |++++| +|+||+.||++|+|++|+.+|+++++|++.++
T Consensus 85 p~a~~~~~~~~~~~~~~~~~~~~~~~l~Gii~~l~gllrlG~l~~f--ip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~ 162 (568)
T PRK11660 85 PTAAFVVILYPVSQQFGLAGLLVATLMSGIILILMGLARLGRLIEY--IPLSVTLGFTSGIGIVIATLQIKDFFGLQMAH 162 (568)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhHHHhc--CcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 11 33466666 999999 99999999999999999999999999998643
Q ss_pred -CCccHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHhhhhhhhhhhhcchhhHHHHHHHHHhhhhcCCC--cceeee
Q 005994 194 -SSKIVPLIKSIILGADKFSWPPFLVGSIILAILLIMKQLGKSRKYLRFLRAAGPLTGVVLGTTIVKIYHPP--SITLVG 270 (666)
Q Consensus 194 -~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~~~p~~Li~vv~gt~~~~~~~~~--~v~~vg 270 (666)
...+.+.+..++++++++||+++++|++++++++.++++.+ ++|++++++++++++++.++.. +++.+|
T Consensus 163 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~lll~~~~~~~--------~iP~~li~iiv~t~~~~~~~~~~~~v~~vg 234 (568)
T PRK11660 163 VPEHYLEKVGALFQALPTINWGDALIGIVTLGVLILWPRLKI--------RLPGHLPALLAGTAVMGVLNLLGGHVATIG 234 (568)
T ss_pred CCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhhcc--------cCchHHHHHHHHHHHHHHHhccCCCceeec
Confidence 34567778888999999999999999999999998876643 4688899999999999877643 556666
Q ss_pred c--------------cCCCCCCCCCCc------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChh
Q 005994 271 D--------------IPQGLPNFSIPK------------SFECAMSLIPTAILITGVAILESVGIAKALAAKNGYELDSN 324 (666)
Q Consensus 271 ~--------------ip~glp~~~~P~------------~~~~~~~ll~~a~~ia~v~~~es~~~~~~~a~~~~~~~d~n 324 (666)
+ +|.++|++.+|. +|+.+..+++.++.+++++++|++.+++++++++++++|+|
T Consensus 235 ~~~~~~~~~g~~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n 314 (568)
T PRK11660 235 SRFHYVLADGSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSAN 314 (568)
T ss_pred ccccccccccccccCCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 5 677788777763 67888999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhhhhhccCCCCcccccchhhhhhhcCCccchHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHHhhcc
Q 005994 325 QELFGLGVANILGSFFSAYPTTGSFSRSAVNHESGAKTGLSGVITGIIMACALLFMTPLFEHIPQCALAAIVVSAVMGLV 404 (666)
Q Consensus 325 rEL~a~GlaNi~sglfGg~P~~~s~srSav~~~sGarT~la~iv~g~~~ll~ll~l~~ll~~IP~avLaaili~~~~~li 404 (666)
|||+|+|++|++||+|||+|++++++||++|.++|||||++++++|+++++++++++|++++||+++||+++++++++|+
T Consensus 315 ~EL~a~G~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~ 394 (568)
T PRK11660 315 SELVGQGLGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMS 394 (568)
T ss_pred HHHHHHhHHHHHHHHhCcccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHh-cCccCeeehhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHhcCcceEEeeccCCCcccccCccCCCcccc
Q 005994 405 DYDEAIFLWH-VDKKDFLLWTITSITTLFLGIEIGVLVGVGASLAFVIHESANPHIAILGRLPGTTVYRNTQQYPEAYTY 483 (666)
Q Consensus 405 ~~~~~~~l~~-~~~~d~~i~~~t~~~~l~~~l~~Gi~vGi~~sl~~~l~~~~~p~~~~lg~~~~t~~~r~~~~~~~~~~~ 483 (666)
++++++.+|| .++.|+.+|+.|+++++++|+..|+++|+++++++++++.+++. +.++ .++ .++.
T Consensus 395 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~-----~~~~------~~~---~~~~ 460 (568)
T PRK11660 395 EAHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIAEMT-----RLAP------ISV---QDVP 460 (568)
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc-----cccc------ccc---ccCC
Confidence 9988888877 57899999999999999999999999999999999999987642 2211 111 2345
Q ss_pred CcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEE
Q 005994 484 HGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIA 563 (666)
Q Consensus 484 ~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~ 563 (666)
+++.++|++|+|||+|++++++++++.. ++.+.+|+||++++++|+||+++|.++.+++++ |++++
T Consensus 461 ~~i~iv~~~g~L~F~n~~~l~~~l~~~~-------------~~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~ 526 (568)
T PRK11660 461 DDVLVLRINGPLFFAAAERLFTELESRT-------------EGKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELR 526 (568)
T ss_pred CcEEEEEeCCeeeeeeHHHHHHHHHhhC-------------CCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEE
Confidence 7899999999999999999999987643 134799999999999999999999999999999 99999
Q ss_pred EEeCChhHHHHHHhcCCccccCCeeeecCHHHHHHHHHHh
Q 005994 564 ISNLNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCLQH 603 (666)
Q Consensus 564 la~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae~~ 603 (666)
++++++++++.|+++|+.+..+..++|+|.|||+++++++
T Consensus 527 l~~l~~~v~~~l~~~gl~~~~~~~~if~~~~~Al~~~~~~ 566 (568)
T PRK11660 527 ICNLQFQPLRTLARAGIQPIPGRLAFYPTLREALADLLRN 566 (568)
T ss_pred EecCChHHHHHHHHCCChhhcCcccccCCHHHHHHHHHhh
Confidence 9999999999999999999888889999999999998753
No 5
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=1.2e-44 Score=378.75 Aligned_cols=267 Identities=39% Similarity=0.658 Sum_probs=239.7
Q ss_pred ceeEEecccchhHHHHHHHhHHHHHHHhhhhHHhCccc-CCCCccHHHHHHHHhhcCC-CCchhHHHHHHHHHHHHHHHH
Q 005994 154 VWWIKYYSIYHAVISGFTTASAIVIALSQAKYFLGYDV-ARSSKIVPLIKSIILGADK-FSWPPFLVGSIILAILLIMKQ 231 (666)
Q Consensus 154 G~l~~~~~ip~~Vi~Gf~~gigl~I~~~ql~~~~G~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~lg~~~l~~l~~~~~ 231 (666)
|++++| +|+||+.||++|+|++|+.+|+++++|++. +.+++....++.+...+++ .||.++++|++++++++..++
T Consensus 7 G~l~~~--ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 84 (280)
T PF00916_consen 7 GFLVRF--IPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFLLIIRL 84 (280)
T ss_pred cHHHHH--ccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHHhhhhh
Confidence 899999 999999999999999999999999999873 3344445556666666666 589999999999999988888
Q ss_pred hhhhhhhhhhhcchhhHHHHHHHHHhhhhcCC--CcceeeeccCCCCCCCCCCc---chHHHHHHHHHHHHHHHHHHHHH
Q 005994 232 LGKSRKYLRFLRAAGPLTGVVLGTTIVKIYHP--PSITLVGDIPQGLPNFSIPK---SFECAMSLIPTAILITGVAILES 306 (666)
Q Consensus 232 ~~~~~~~~~~~~~p~~Li~vv~gt~~~~~~~~--~~v~~vg~ip~glp~~~~P~---~~~~~~~ll~~a~~ia~v~~~es 306 (666)
+.++.+...+.++|.+++++++++.+++.++. .++..+|++|.++|.+.+|. +++.+..+++.++++++++++|+
T Consensus 85 ~~~~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~~~v~~~~~i~~~lp~~~~p~~~~~~~~~~~~~~~a~~ia~v~~~~s 164 (280)
T PF00916_consen 85 LPKRLPSRFWPPIPAPLIVVVLGTLLSWLFLLDKYGVAIVGEIPSGLPPPSLPSFDISWSLILDLLPTALAIAIVGFIES 164 (280)
T ss_pred hhhhccccccccccccceeeehhhhhhhhhhhccccccccccccccCccccCcccccccccccccchhHHHHHHHHHHHH
Confidence 77444433345678889999999998877643 36889999999999999993 57888999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHhhhhhhhhhccCCCCcccccchhhhhhhcCCccchHHHHHHHHHHHHHHHhHHHHhh
Q 005994 307 VGIAKALAAKNGYELDSNQELFGLGVANILGSFFSAYPTTGSFSRSAVNHESGAKTGLSGVITGIIMACALLFMTPLFEH 386 (666)
Q Consensus 307 ~~~~~~~a~~~~~~~d~nrEL~a~GlaNi~sglfGg~P~~~s~srSav~~~sGarT~la~iv~g~~~ll~ll~l~~ll~~ 386 (666)
+.+++++++++++++|+||||+|+|++|+++|+|||+|+|++++||++|+++|||||++++++|+++++++++++|+++|
T Consensus 165 ~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~l~~l~~~~~~l~~ 244 (280)
T PF00916_consen 165 LLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFVLLVLLFLAPLLAY 244 (280)
T ss_pred HHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhhccCHHHHHHHHhcCccCeee
Q 005994 387 IPQCALAAIVVSAVMGLVDYDEAIFLWHVDKKDFLL 422 (666)
Q Consensus 387 IP~avLaaili~~~~~li~~~~~~~l~~~~~~d~~i 422 (666)
||+|+||+++++++++|++++.++.+||.++.|+++
T Consensus 245 iP~~~La~ili~~~~~l~~~~~~~~~~~~~~~d~~i 280 (280)
T PF00916_consen 245 IPKAVLAAILIVVGISLIDWSSLRRLWRVSKADFLI 280 (280)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHhcCChhheEC
Confidence 999999999999999999999999999999999875
No 6
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=99.93 E-value=1.8e-24 Score=237.92 Aligned_cols=254 Identities=21% Similarity=0.275 Sum_probs=204.5
Q ss_pred ceeEEecccchhHHHHHHHhHHHHHHHhhhhHHhCcccCCCCccHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHhh
Q 005994 154 VWWIKYYSIYHAVISGFTTASAIVIALSQAKYFLGYDVARSSKIVPLIKSIILGADKFSWPPFLVGSIILAILLIMKQLG 233 (666)
Q Consensus 154 G~l~~~~~ip~~Vi~Gf~~gigl~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~ 233 (666)
+|+.|+ +|+.|.++++.++|+.++..+++++.|.....++. +..++.++.+|+++++++++++++.
T Consensus 117 ~~i~~~--~Pp~v~g~iv~~IGl~L~~i~l~~~~g~~~~~~~~------------~~~~~~~~~vg~~~l~~~vl~~~~~ 182 (415)
T TIGR00801 117 RWLMKL--FPPVVTGPVVMLIGLSLIPVAVKMAAGGEAAMSSA------------TYGSLENLGVAFVVLALIILLNRFG 182 (415)
T ss_pred HHHHhc--CCchhHHHhHHHHHHHHHHHHHHHhccCCCccccc------------ccCchhhHHHHHHHHHHHHHHHHHH
Confidence 467999 99999999999999999999999987764211110 1124556889999999888887776
Q ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhhcCCCcceeeeccC-CCCCCCCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005994 234 KSRKYLRFLRAAGPLTGVVLGTTIVKIYHPPSITLVGDIP-QGLPNFSIPK-SFECAMSLIPTAILITGVAILESVGIAK 311 (666)
Q Consensus 234 ~~~~~~~~~~~p~~Li~vv~gt~~~~~~~~~~v~~vg~ip-~glp~~~~P~-~~~~~~~ll~~a~~ia~v~~~es~~~~~ 311 (666)
|+ ++|.++.++++++|+++++.++..+...+.+.| .++|.+..|. .|+ ...+...+.++++.++|++++.+
T Consensus 183 ~g-----~~~~~aiLigiv~g~i~a~~lg~~~~~~v~~~~~~~lP~~~~~g~~f~--~~~~~~~~~i~lv~~~es~g~~~ 255 (415)
T TIGR00801 183 KG-----FLKSISILIGILVGYILALFMGIVDFSPVIDAPWFSLPTPFTFGPSFE--WPAILTMLPVAIVSLVESIGDIT 255 (415)
T ss_pred hh-----HHHHHHHHHHHHHHHHHHHHcCCccchhhccCcccccCCccCCCceec--HHHHHHHHHHHHHHHHHhhhHHH
Confidence 53 446688999999999999998866554445555 2456554431 122 24555668899999999999999
Q ss_pred HHHhhcCCCCC----hhhHHHHhhhhhhhhhccCCCCcccccchhhhhhhcCCccchHHHHHHHHHHHHHHH--hHHHHh
Q 005994 312 ALAAKNGYELD----SNQELFGLGVANILGSFFSAYPTTGSFSRSAVNHESGAKTGLSGVITGIIMACALLF--MTPLFE 385 (666)
Q Consensus 312 ~~a~~~~~~~d----~nrEL~a~GlaNi~sglfGg~P~~~s~srSav~~~sGarT~la~iv~g~~~ll~ll~--l~~ll~ 385 (666)
+++++.|++.| .|||+.++|++|+++|+||++|.+++..+++++..+|++||++.+++|++++++.++ ++++++
T Consensus 256 a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~ 335 (415)
T TIGR00801 256 ATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNIGVIALTRVASRWVIVGAAVILIALGFFPKIAALIT 335 (415)
T ss_pred HHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhhhheeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988664 479999999999999999999999999999999999999999999999999999999 999999
Q ss_pred hhcHHHHHHHHHHHHhhccCHHHHHHHHhcCcc---CeeehhhhhhH
Q 005994 386 HIPQCALAAIVVSAVMGLVDYDEAIFLWHVDKK---DFLLWTITSIT 429 (666)
Q Consensus 386 ~IP~avLaaili~~~~~li~~~~~~~l~~~~~~---d~~i~~~t~~~ 429 (666)
++|.++++|+++ +.++++...+++.+++.+.. +..+..+++..
T Consensus 336 ~iP~~vlgg~~l-~~~~~i~~~gi~~l~~~~~~~~r~~~i~~~s~~~ 381 (415)
T TIGR00801 336 SIPSPVLGGASI-VMFGMIAASGIRILIRNKLDNRRNRNIIAASVGL 381 (415)
T ss_pred hCCHHHHHHHHH-HHHHHHHHHHHHHHHhCccCcccceehHHHHHHH
Confidence 999999999999 69999999999999886544 44444444433
No 7
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=99.92 E-value=1e-23 Score=231.98 Aligned_cols=240 Identities=23% Similarity=0.318 Sum_probs=190.1
Q ss_pred ceeEEecccchhHHHHHHHhHHHHHHHhhhhHHhCcccCCCCccHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHhh
Q 005994 154 VWWIKYYSIYHAVISGFTTASAIVIALSQAKYFLGYDVARSSKIVPLIKSIILGADKFSWPPFLVGSIILAILLIMKQLG 233 (666)
Q Consensus 154 G~l~~~~~ip~~Vi~Gf~~gigl~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~ 233 (666)
+++.|+ +|+.|++.++..+|+.++..+++++.|... . .+..++..+.+++++++++++++++.
T Consensus 104 ~~l~~~--iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~--~-------------~~~~~~~~~~l~l~~l~~~il~~~~~ 166 (406)
T TIGR03173 104 SKLVRF--FPPVVTGTVITLIGLSLMPVAINWAAGGAG--A-------------PDFGSPQNLGLALLTLVIILLLNRFG 166 (406)
T ss_pred HHHHHH--CCcHHHHHHHHHHHHHHHHHHHHHhccCCC--c-------------ccccchHHHHHHHHHHHHHHHHHHHh
Confidence 899999 999998999999999999999998765321 1 02234556778888888887777665
Q ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhhcCCCcceeeeccCC-CCC---CCCCC-cchHHHHHHHHHHHHHHHHHHHHHHH
Q 005994 234 KSRKYLRFLRAAGPLTGVVLGTTIVKIYHPPSITLVGDIPQ-GLP---NFSIP-KSFECAMSLIPTAILITGVAILESVG 308 (666)
Q Consensus 234 ~~~~~~~~~~~p~~Li~vv~gt~~~~~~~~~~v~~vg~ip~-glp---~~~~P-~~~~~~~~ll~~a~~ia~v~~~es~~ 308 (666)
|+ +++.|+.++++++|+++++.++..+.+.+++.|. .+| ++.+| .+++. +...+.+++++++|+++
T Consensus 167 ~~-----~~~~~aiLi~ivvg~iva~~~g~~~~~~i~~~~~~~~P~~~~~~~P~f~~~~----~~~~~~~~lv~~~esig 237 (406)
T TIGR03173 167 KG-----FLRSIAVLLGLVVGTIVAAALGMVDFSGVAEAPWFALPTPFHFGAPTFDLVA----ILTMIIVYLVSMVETTG 237 (406)
T ss_pred hh-----HHHHhHHHHHHHHHHHHHHHhcCCCchhhccCCeeeCCCCCcCCCCeeCHHH----HHHHHHHHHHHHHHHHH
Confidence 43 3456788999999999999988765555554432 233 24455 23333 33456788999999999
Q ss_pred HHHHHHhhcCCCCC---hhhHHHHhhhhhhhhhccCCCCcccccchhhhhhhcCCccchHHHHHHHHHHHHHHH--hHHH
Q 005994 309 IAKALAAKNGYELD---SNQELFGLGVANILGSFFSAYPTTGSFSRSAVNHESGAKTGLSGVITGIIMACALLF--MTPL 383 (666)
Q Consensus 309 ~~~~~a~~~~~~~d---~nrEL~a~GlaNi~sglfGg~P~~~s~srSav~~~sGarT~la~iv~g~~~ll~ll~--l~~l 383 (666)
+.+++++..+++.| .|||+.++|++|+++|+||++|.|+...+++++..+|++||++++++|++++++.++ ++++
T Consensus 238 ~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~~~~~~~~~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l 317 (406)
T TIGR03173 238 DFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTSFSQNVGLVQLTGVKSRYVVAAAGVILVLLGLFPKLAAL 317 (406)
T ss_pred HHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcchhhhHHHHHHhCCCchHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887765 479999999999999999999997644445678889999999999999999998877 8999
Q ss_pred HhhhcHHHHHHHHHHHHhhccCHHHHHHHHhcCccCe
Q 005994 384 FEHIPQCALAAIVVSAVMGLVDYDEAIFLWHVDKKDF 420 (666)
Q Consensus 384 l~~IP~avLaaili~~~~~li~~~~~~~l~~~~~~d~ 420 (666)
++++|.+++++++++ .++++...+++.+++.+.+|.
T Consensus 318 ~~~iP~~vlgg~~l~-~~~~i~~~g~~~l~~~~~~~~ 353 (406)
T TIGR03173 318 VASIPQPVLGGAGLV-MFGMVAASGIRILSKVDFDRR 353 (406)
T ss_pred HHhCCHHHHHHHHHH-HHHHHHHHHHHHHHhCcccCc
Confidence 999999999998885 999999999999988776544
No 8
>PRK10720 uracil transporter; Provisional
Probab=99.92 E-value=1.4e-23 Score=231.23 Aligned_cols=314 Identities=18% Similarity=0.204 Sum_probs=229.6
Q ss_pred hhhHHHHHHHhhhcccccccccccCChh------------h---HHHHHhhc---------------ceeEEecccchhH
Q 005994 117 LMAGTTVGIMLVPQLLSWQPNKFSTCST------------F---STLSFCHG---------------VWWIKYYSIYHAV 166 (666)
Q Consensus 117 ~~AGitv~~~~iPq~mayaPi~fGsS~~------------~---~~la~l~G---------------G~l~~~~~ip~~V 166 (666)
+.+|+.+-++..+-+.-+ |++.|+|-. | ....++.| +++.++ +|+.|
T Consensus 47 ~~sGi~TliQ~~~~g~rl-P~~~G~sfa~i~~~~~~~~~~~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~--fPp~v 123 (428)
T PRK10720 47 LFNGIGTLLYLFICKGKI-PAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVALIVKKAGTGWLDVL--FPPAA 123 (428)
T ss_pred HHHHHHHHHHHHhccCcc-ceEEeCcHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh--CChHH
Confidence 788888888766542111 888888731 1 11222222 357899 99999
Q ss_pred HHHHHHhHHHHHHHhhhhHHhCcccCCCCccHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHhhhhhhhhhhhcchh
Q 005994 167 ISGFTTASAIVIALSQAKYFLGYDVARSSKIVPLIKSIILGADKFSWPPFLVGSIILAILLIMKQLGKSRKYLRFLRAAG 246 (666)
Q Consensus 167 i~Gf~~gigl~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~~~p~ 246 (666)
++.|++.+|+.++...+++ .|...... +..++..++++++++++++++.++.|+ +++..+
T Consensus 124 ~G~~i~lIGl~L~~~~~~~-~g~~~~~~--------------~~~~~~~~~lalv~l~iil~~~~~~kg-----~~~~~~ 183 (428)
T PRK10720 124 MGAIVAVIGLELAGVAAGM-AGLLPAEG--------------QTPDSKTIIISMVTLAVTVLGSVLFRG-----FLAIIP 183 (428)
T ss_pred HHHHHHHHHHHhHHHHHhh-ccccCCCC--------------cccchHHHHHHHHHHHHHHHHHHHhcc-----HHHHhH
Confidence 9999999999999887764 34221110 234566788999998888776555443 223345
Q ss_pred hHHHHHHHHHhhhhcCCCcceeeecc-CCCCCCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----
Q 005994 247 PLTGVVLGTTIVKIYHPPSITLVGDI-PQGLPNFSIP-KSFECAMSLIPTAILITGVAILESVGIAKALAAKNGYE---- 320 (666)
Q Consensus 247 ~Li~vv~gt~~~~~~~~~~v~~vg~i-p~glp~~~~P-~~~~~~~~ll~~a~~ia~v~~~es~~~~~~~a~~~~~~---- 320 (666)
.++++++|+++++.++..+++.+++. +.++|.+..| +++..+..+ +..+++.++|++++..+.++..+++
T Consensus 184 iLigIvvG~ila~~lG~~d~~~v~~a~~~~lP~~~~P~fd~~~il~l----~~~~lv~~~EsiG~~~a~~~~~~~~~~~~ 259 (428)
T PRK10720 184 ILIGVLVGYALSFAMGMVDTTPIIEAHWFALPTFYTPRFEWFAILTI----LPAALVVIAEHVGHLVVTANIVKKDLLRD 259 (428)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHhhcCccccCCCCCCCcCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 79999999999999987777666654 3567777766 344444444 4455567889999888887766544
Q ss_pred CChhhHHHHhhhhhhhhhccCCCCcccccchhhhhhhcCCccchHHHHHHHHHHHHHHH--hHHHHhhhcHHHHHHHHHH
Q 005994 321 LDSNQELFGLGVANILGSFFSAYPTTGSFSRSAVNHESGAKTGLSGVITGIIMACALLF--MTPLFEHIPQCALAAIVVS 398 (666)
Q Consensus 321 ~d~nrEL~a~GlaNi~sglfGg~P~~~s~srSav~~~sGarT~la~iv~g~~~ll~ll~--l~~ll~~IP~avLaaili~ 398 (666)
.|.||++.++|++|+++|+||++|.++...+..+...+|.++|+...++|++++++.++ ++++++.||.+|++|+.+
T Consensus 260 ~~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i- 338 (428)
T PRK10720 260 PGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSL- 338 (428)
T ss_pred ccccchHhhhhHHHHHHHhcCCCCccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-
Confidence 37799999999999999999999998877777778889999999888888888888865 999999999999999999
Q ss_pred HHhhccCHHHHHHHHh--cCcc---Ceeehh-----------hhhhHHHhhhhHHHHHHHHHHHHHHHHHHhcCcc
Q 005994 399 AVMGLVDYDEAIFLWH--VDKK---DFLLWT-----------ITSITTLFLGIEIGVLVGVGASLAFVIHESANPH 458 (666)
Q Consensus 399 ~~~~li~~~~~~~l~~--~~~~---d~~i~~-----------~t~~~~l~~~l~~Gi~vGi~~sl~~~l~~~~~p~ 458 (666)
+.+++++..+++.+|+ .+.. +..+.. .++..++..|+..|.++|+++++++.++|.-|++
T Consensus 339 ~~fg~i~~~Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~~~~~~~~~~gi~~g~~~ai~Lnlll~~~~~~~~~ 414 (428)
T PRK10720 339 LLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGMALATIVGIGLSLIFKLISKLRPE 414 (428)
T ss_pred HHHHHHHHHHHHHHHHccCCCCcccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcccccccCC
Confidence 6999999999999965 3322 223222 2222334458888999999999999887766653
No 9
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.91 E-value=4.8e-23 Score=220.79 Aligned_cols=322 Identities=20% Similarity=0.318 Sum_probs=250.0
Q ss_pred HHHHhccccccccccCCCcchhhhhhhhhHHHHHHHhhhcccccc----cccccCC------------------------
Q 005994 91 IQWIETFLPCSRWIRTYKWREYFQVDLMAGTTVGIMLVPQLLSWQ----PNKFSTC------------------------ 142 (666)
Q Consensus 91 ~~~~~~~~p~~~wl~~y~~~~~l~~D~~AGitv~~~~iPq~maya----Pi~fGsS------------------------ 142 (666)
+++++++|.+ ++++ +++|.|++||+|+++ +|+|- |..++..
T Consensus 3 ~~~~~~~F~l----~~~~--t~vrtEiiAGlTTFl-----tM~YIl~VnP~IL~~ag~~~~av~~AT~l~a~~gs~~mgl 71 (436)
T COG2252 3 KGDLDRFFKL----KEHG--TTVRTEVIAGLTTFL-----TMAYIVFVNPQILGAAGMPVGAVFVATCLAAAIGSIAMGL 71 (436)
T ss_pred hhHHHHHhCc----cccC--chHHHHHHHHHHHHH-----HHHHhheecHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Confidence 3567788885 7777 799999999999998 66666 3221111
Q ss_pred ---------h------------------hh---HHHHHhhc------------ceeEEecccchhHHHHHHHhHHHHHHH
Q 005994 143 ---------S------------------TF---STLSFCHG------------VWWIKYYSIYHAVISGFTTASAIVIAL 180 (666)
Q Consensus 143 ---------~------------------~~---~~la~l~G------------G~l~~~~~ip~~Vi~Gf~~gigl~I~~ 180 (666)
+ .| +..+|+.| .|++|. +|+++..|..+|||++|..
T Consensus 72 ~An~P~alapgmglnAfFaftvv~~~gi~wq~AL~aVF~sGiif~ils~t~iR~~ii~~--IP~~lk~ai~aGIGlFia~ 149 (436)
T COG2252 72 YANLPIALAPGMGLNAFFAFTVVLGMGLSWQVALGAVFLSGIIFLLLSLTGIREWIINA--IPRSLKLAIGAGIGLFIAL 149 (436)
T ss_pred HHcCchhhcchhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh--CcHHHHHHHHHHHHHHHHH
Confidence 0 12 44556666 799999 9999999999999999999
Q ss_pred hhhhHHhCcccCCCCccHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHhhhhhhhhhhhcchh-hHHHHHHHHHhhh
Q 005994 181 SQAKYFLGYDVARSSKIVPLIKSIILGADKFSWPPFLVGSIILAILLIMKQLGKSRKYLRFLRAAG-PLTGVVLGTTIVK 259 (666)
Q Consensus 181 ~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~~~p~-~Li~vv~gt~~~~ 259 (666)
..+++ .|+-..+..+. -.+++++.+.++++++++++...+... ++++ .+++++..+++++
T Consensus 150 IgL~~-~Givv~~~~tl--------v~LG~~~~p~vll~i~G~~l~~~L~~~----------~i~Gaili~i~~~t~~g~ 210 (436)
T COG2252 150 IGLKN-AGIVVANPATL--------VALGDFTSPGVLLAILGLLLIIVLVSR----------KIKGAILIGILVTTILGI 210 (436)
T ss_pred HHHhh-CCeEEecCcce--------EEeecCCCchHHHHHHHHHHHHHHHHh----------hccHhhhHHHHHHHHHHH
Confidence 99995 77744333222 234677777788888887776665432 2233 4788888888888
Q ss_pred hcCCCcce--eeeccCCCCCCCCCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------CCChhhHHH
Q 005994 260 IYHPPSIT--LVGDIPQGLPNFSIPKSF---ECAMSLIPTAILITGVAILESVGIAKALAAKNGY------ELDSNQELF 328 (666)
Q Consensus 260 ~~~~~~v~--~vg~ip~glp~~~~P~~~---~~~~~ll~~a~~ia~v~~~es~~~~~~~a~~~~~------~~d~nrEL~ 328 (666)
.++..... .++..|+-.|.+.- .++ ......++..+++.++.++|++++..+++++.|. -.+.+|-+.
T Consensus 211 ~~g~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~~~~~al~ 289 (436)
T COG2252 211 ILGIDVHFGGLVGAPPSLSPIFGQ-LDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMPRIGKALL 289 (436)
T ss_pred HhcccccccccccCCCCccchhhH-hhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCccccchHHH
Confidence 87743111 13333332222210 011 2235677788999999999999999999987542 246889999
Q ss_pred HhhhhhhhhhccCCCCcccccchhhhhhhcCCccchHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHHhhccCHHH
Q 005994 329 GLGVANILGSFFSAYPTTGSFSRSAVNHESGAKTGLSGVITGIIMACALLFMTPLFEHIPQCALAAIVVSAVMGLVDYDE 408 (666)
Q Consensus 329 a~GlaNi~sglfGg~P~~~s~srSav~~~sGarT~la~iv~g~~~ll~ll~l~~ll~~IP~avLaaili~~~~~li~~~~ 408 (666)
+++++.++|+++|+.|+ .+|.+|+..+..|+||+++++++|+++++. +|++|++..+|..+.+++++++|..|+
T Consensus 290 ~D~v~t~~ga~~GtS~~-t~yIESaaGva~GgrTGltavv~g~lFl~~-lf~~Pl~~~vP~~AtapaLi~vG~lM~---- 363 (436)
T COG2252 290 ADSVATVVGALFGTSTV-TAYIESAAGVAAGGRTGLTAVVTGLLFLLS-LFFSPLAALVPGYATAPALIIVGALML---- 363 (436)
T ss_pred HhHHHHHHHHhcCCcch-hhhhhcccccccccccccHHHHHHHHHHHH-HHHHHHHHhCcHhhhhHHHHHHHHHHH----
Confidence 99999999999999999 889999999999999999999999999999 699999999999999999999999987
Q ss_pred HHHHHhcCccCeeehhhhhhHHHhhhhHHHHHHHHHHHHHHHHH
Q 005994 409 AIFLWHVDKKDFLLWTITSITTLFLGIEIGVLVGVGASLAFVIH 452 (666)
Q Consensus 409 ~~~l~~~~~~d~~i~~~t~~~~l~~~l~~Gi~vGi~~sl~~~l~ 452 (666)
..+.++++.|+...+.+|++.++..+.+.|.-|+.++++.|..
T Consensus 364 -~~v~~id~~d~~ea~PaF~tiv~mplTySIa~Gia~Gfi~y~i 406 (436)
T COG2252 364 -SSVKQIDWSDFTEAVPAFLTIVMMPLTYSIADGIAFGFISYVI 406 (436)
T ss_pred -hhhccCCchhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6788899999999999999999999999999999999887664
No 10
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=99.84 E-value=5.9e-20 Score=198.55 Aligned_cols=240 Identities=20% Similarity=0.241 Sum_probs=198.4
Q ss_pred c-eeEEecccchhHHHHHHHhHHHHHHHhhhhHHhCcccCCCCccHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHh
Q 005994 154 V-WWIKYYSIYHAVISGFTTASAIVIALSQAKYFLGYDVARSSKIVPLIKSIILGADKFSWPPFLVGSIILAILLIMKQL 232 (666)
Q Consensus 154 G-~l~~~~~ip~~Vi~Gf~~gigl~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~ 232 (666)
. |+.|+ +|+.|++-++.-||+.++...++++.|.....++. +..+...+.++++++++++++.++
T Consensus 127 ~~~l~rl--fPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~~~~~------------~~~~~~~l~la~~tl~~il~~~~f 192 (451)
T COG2233 127 KIRLARL--FPPVVTGPVVLVIGLSLAPVAINMAGGGPGAAGNP------------DFGSLENLGLALVTLLIILLINRF 192 (451)
T ss_pred HHHHHHh--CCCceEEeEeeeehhhhHHHHHHHhhCCCCCCCCc------------ccCchhHHHHHHHHHHHHHHHHHH
Confidence 6 99999 99999999999999999999999999875322211 223556788999999999988888
Q ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhhcCCCcceeeeccCC-CCCCCCCC---cchHHHHHHHHHHHHHHHHHHHHHHH
Q 005994 233 GKSRKYLRFLRAAGPLTGVVLGTTIVKIYHPPSITLVGDIPQ-GLPNFSIP---KSFECAMSLIPTAILITGVAILESVG 308 (666)
Q Consensus 233 ~~~~~~~~~~~~p~~Li~vv~gt~~~~~~~~~~v~~vg~ip~-glp~~~~P---~~~~~~~~ll~~a~~ia~v~~~es~~ 308 (666)
.| +|++..+.|+++++|+++++..+..+.+.+.+.|. .+|.+..+ ++|.. +...+.++++.+.|+++
T Consensus 193 ~~-----g~~~~i~ILiGlv~G~~la~~~G~vdf~~v~~a~w~~~P~~~~fg~~F~~~a----il~m~~v~iV~~~E~~G 263 (451)
T COG2233 193 GK-----GFLRRIPILIGLVVGYLLALFMGMVDFSGVAEAPWFALPTPFYFGMAFDWGA----ILTMLPVAIVTIVEHTG 263 (451)
T ss_pred hh-----hHHHHHHHHHHHHHHHHHHHHhCCcCccccccCceeeCCcccCCCeeecHHH----HHHHHHHHHHHHHHHhh
Confidence 76 35566678999999999999999877777777662 45555433 23333 33446688899999999
Q ss_pred HHHHHHhhcCCCCC----hhhHHHHhhhhhhhhhccCCCCcccccchhhhhhhcCCccchHHHHHHHHHHHHHHH--hHH
Q 005994 309 IAKALAAKNGYELD----SNQELFGLGVANILGSFFSAYPTTGSFSRSAVNHESGAKTGLSGVITGIIMACALLF--MTP 382 (666)
Q Consensus 309 ~~~~~a~~~~~~~d----~nrEL~a~GlaNi~sglfGg~P~~~s~srSav~~~sGarT~la~iv~g~~~ll~ll~--l~~ 382 (666)
..++.++..+++.+ ..|.++++|++++++|+||++|.|+...+..+...+|.+||+....+|++++++.++ ++.
T Consensus 264 ~i~A~~~itg~~~~~~~~l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~a 343 (451)
T COG2233 264 DITATGEITGRDLDGKPRLRRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGA 343 (451)
T ss_pred hhhhHHhHhCCcCccCcccccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHH
Confidence 88888887776665 467889999999999999999999999999999999999999999999999999887 889
Q ss_pred HHhhhcHHHHHHHHHHHHhhccCHHHHHHHHhcCc
Q 005994 383 LFEHIPQCALAAIVVSAVMGLVDYDEAIFLWHVDK 417 (666)
Q Consensus 383 ll~~IP~avLaaili~~~~~li~~~~~~~l~~~~~ 417 (666)
+++.||.+|++|+.++ .|+++...+++.+-|.+.
T Consensus 344 l~~sIP~pVlGGa~iv-mFG~Ia~sGir~l~~~~~ 377 (451)
T COG2233 344 LIQSIPSPVLGGAMLV-LFGMIAASGIRILIRNKV 377 (451)
T ss_pred HHHhCChhhhhHHHHH-HHHHHHHHHHHHHHhccc
Confidence 9999999999999986 999999999988877543
No 11
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=99.77 E-value=1.9e-17 Score=182.62 Aligned_cols=229 Identities=19% Similarity=0.214 Sum_probs=166.7
Q ss_pred ceeEEecccchhHHHHHHHhHHHHHHHhhhhHHhCcccCCCCccHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHhh
Q 005994 154 VWWIKYYSIYHAVISGFTTASAIVIALSQAKYFLGYDVARSSKIVPLIKSIILGADKFSWPPFLVGSIILAILLIMKQLG 233 (666)
Q Consensus 154 G~l~~~~~ip~~Vi~Gf~~gigl~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~ 233 (666)
+++.|+ +|+.|.+-.+..||+.++...++...|- .+ .+|. ++++++.+++...+.
T Consensus 136 ~~l~r~--fpPvV~G~vv~lIGlsL~~vg~~~~~~~------~~-------------~~~~----al~tl~~i~l~~l~~ 190 (429)
T TIGR03616 136 RWIERL--MPPVVTGAVVMAIGLNLAPIAVKSVSAS------GF-------------DSWM----AVLTILCIGAVAVFT 190 (429)
T ss_pred HHHHHh--CCcHHHHHHHHHHHHHHHHHHHHhcccc------cc-------------ccHH----HHHHHHHHHHHHHHH
Confidence 458899 9999999999999999998777753221 00 1121 233333333333333
Q ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhhc----C---CCcceeeeccC-CCCCCCCCC-cchHHHHHHHHHHHHHHHHHHH
Q 005994 234 KSRKYLRFLRAAGPLTGVVLGTTIVKIY----H---PPSITLVGDIP-QGLPNFSIP-KSFECAMSLIPTAILITGVAIL 304 (666)
Q Consensus 234 ~~~~~~~~~~~p~~Li~vv~gt~~~~~~----~---~~~v~~vg~ip-~glp~~~~P-~~~~~~~~ll~~a~~ia~v~~~ 304 (666)
|. ++|..+.|+++++|+++++.+ + ..++..+.+.| .++|++..| ++++.+ ...+..+++.++
T Consensus 191 ~~-----~l~~~avLiGivvG~iva~~l~~~~g~~~~vd~s~v~~a~~~~lP~~~~p~f~~~~i----l~~~~~~lv~~~ 261 (429)
T TIGR03616 191 RG-----MLQRLLILVGLIAAYLAYFILTNVFGLGKAVDFSPISQAAWFGLPNFHTPVFNANAM----LLIAPVALILVA 261 (429)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHhhhcCCCccccCcccccCccccCCcCCCceEcHHHH----HHHHHHHHHHHH
Confidence 32 234457899999999987653 3 23455543333 467777777 344443 344556888999
Q ss_pred HHHHHHHHHHhhcCCCCCh--hhHHHHhhhhhhhhhccCCCCcccccchhhhhhhcCCccchHHHHHHHHHHHHHHH--h
Q 005994 305 ESVGIAKALAAKNGYELDS--NQELFGLGVANILGSFFSAYPTTGSFSRSAVNHESGAKTGLSGVITGIIMACALLF--M 380 (666)
Q Consensus 305 es~~~~~~~a~~~~~~~d~--nrEL~a~GlaNi~sglfGg~P~~~s~srSav~~~sGarT~la~iv~g~~~ll~ll~--l 380 (666)
|++++..++++..+++.|+ ||++.++|++|+++|+||+.|.+....+..+...+|..+|.....++++++++.++ +
T Consensus 262 esiG~~~a~~~~~~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~en~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~ 341 (429)
T TIGR03616 262 ENLGHFKAVAGMTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAENIGVMAVTKVYSTLVFVAAAVFAILLGFSPKF 341 (429)
T ss_pred HhhHHHHHHHHHhCCCCCchhccchhhhhHHHHHHHhcCCCCCcceeeeeeeeeecCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988877776 79999999999999999999998887777777788888888888888887766644 5
Q ss_pred HHHHhhhcHHHHHHHHHHHHhhccCHHHHHHH--HhcCc
Q 005994 381 TPLFEHIPQCALAAIVVSAVMGLVDYDEAIFL--WHVDK 417 (666)
Q Consensus 381 ~~ll~~IP~avLaaili~~~~~li~~~~~~~l--~~~~~ 417 (666)
+.++..||.+|++|+++ +.++++...+++.+ .+.+.
T Consensus 342 ~al~~~IP~pVlgG~~i-~~fg~i~~~Gi~~l~~~~~d~ 379 (429)
T TIGR03616 342 GALIHTIPVAVLGGASI-VVFGLIAVAGARIWVQNKVDL 379 (429)
T ss_pred HHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhccCCc
Confidence 55999999999999999 69999999999844 34443
No 12
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=99.75 E-value=8.2e-17 Score=176.59 Aligned_cols=249 Identities=15% Similarity=0.145 Sum_probs=188.8
Q ss_pred ceeEEecccchhHHHHHHHhHHHHHHHhhhhHHhCcccCCCCccHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHhh
Q 005994 154 VWWIKYYSIYHAVISGFTTASAIVIALSQAKYFLGYDVARSSKIVPLIKSIILGADKFSWPPFLVGSIILAILLIMKQLG 233 (666)
Q Consensus 154 G~l~~~~~ip~~Vi~Gf~~gigl~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~ 233 (666)
+++.|+ +|+-|.+-++.-+|+.++...++.+.|.+.....++ +++++..+.+++.++++++.+.++.
T Consensus 124 ~~l~r~--fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~~~~~-----------~~~~~~~~~~a~~~l~~il~~~~~~ 190 (433)
T PRK11412 124 HRLARL--FTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGIADPN-----------GKIQLPPFGLSVAVMCLVLAMIIFL 190 (433)
T ss_pred HHHHHh--CCchhhhHhHHHHHHhhHHHHHHHhcCCCccCcccc-----------cccchHHHHHHHHHHHHHHHHHHHh
Confidence 889999 999999999999999999999999988621111111 2223345667777777777776665
Q ss_pred hhhhhhhhhcchhhHHHHHHHHHhhh-hcCCCcceeeeccCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005994 234 KSRKYLRFLRAAGPLTGVVLGTTIVK-IYHPPSITLVGDIPQGLPNFSIPKSFECAMSLIPTAILITGVAILESVGIAKA 312 (666)
Q Consensus 234 ~~~~~~~~~~~p~~Li~vv~gt~~~~-~~~~~~v~~vg~ip~glp~~~~P~~~~~~~~ll~~a~~ia~v~~~es~~~~~~ 312 (666)
|. ++|.-+.|+++++|++++. .++. +...+++.|.-..++..|..|+ ...+...+.++++...|+++...+
T Consensus 191 ~g-----~~~~~svLiGiv~G~v~a~~~~g~-d~~~v~~a~w~~~pfG~P~~F~--~~~il~~~~~~lv~~~e~iG~~~a 262 (433)
T PRK11412 191 PQ-----RIARYSLLVGTIVGWILWAFCFPS-SHSLSGELHWQWFPLGSGGALE--PGIILTAVITGLVNISNTYGAIRG 262 (433)
T ss_pred hh-----HHHHHHHHHHHHHHHHHHHHHhCC-CcchhccCCceeecCCCCCccC--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 4456678999999999854 5555 4444555442111244441122 223445566788889999988888
Q ss_pred HHhhcCCCC----ChhhHHHHhhhhhhhhhccCCCCcccccchhhhhhhcCCccchHHHHHHHHHHHHHHH--hHHHHhh
Q 005994 313 LAAKNGYEL----DSNQELFGLGVANILGSFFSAYPTTGSFSRSAVNHESGAKTGLSGVITGIIMACALLF--MTPLFEH 386 (666)
Q Consensus 313 ~a~~~~~~~----d~nrEL~a~GlaNi~sglfGg~P~~~s~srSav~~~sGarT~la~iv~g~~~ll~ll~--l~~ll~~ 386 (666)
.++..+.+. +.+|-+.++|++|+++|+||++|.++...+..+-..+|.++|+...++|++++++.++ ++.++..
T Consensus 263 ~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~TgV~SR~v~~~aa~ilillgl~PK~~alia~ 342 (433)
T PRK11412 263 TDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYRRRSFIYGSVMCLLVALIPALTRLFCS 342 (433)
T ss_pred HHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887766543 4588999999999999999999998888888999999999999999999999999987 8889999
Q ss_pred hcHHHHHHHHHHHHhhccCHHHHHHHHhcCccCeeehh
Q 005994 387 IPQCALAAIVVSAVMGLVDYDEAIFLWHVDKKDFLLWT 424 (666)
Q Consensus 387 IP~avLaaili~~~~~li~~~~~~~l~~~~~~d~~i~~ 424 (666)
||.+|++|+.++ .++++...+++.+.|.+..+....+
T Consensus 343 IP~pVlGg~~~~-~Fg~I~~~Gi~~l~~~~~~~rn~~i 379 (433)
T PRK11412 343 IPLPVSSAVMLV-SYLPLLGSALVFSQQITFTARNIYR 379 (433)
T ss_pred CCHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCcccchh
Confidence 999999999987 8999888888888887755444333
No 13
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=99.70 E-value=4.6e-17 Score=147.72 Aligned_cols=117 Identities=36% Similarity=0.605 Sum_probs=102.2
Q ss_pred CCCccccCcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHH
Q 005994 477 YPEAYTYHGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYK 556 (666)
Q Consensus 477 ~~~~~~~~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~ 556 (666)
|++.++.++++|++++|+|+|+|++++++.+.+.....++... .....+.+||||++|++||++|+++|.++.++++
T Consensus 1 y~~~~~~~~v~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~ 77 (117)
T PF01740_consen 1 YIEIETHDGVLIIRLDGPLFFANAEEFRDRIRKLIDEDPERIK---KRQTIKNVILDMSGVSFIDSSGIQALVDIIKELR 77 (117)
T ss_dssp SCEEEEETTEEEEEEESEESHHHHHHHHHHHHHHHCCSSS--H---TSSSSSEEEEEETTESEESHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCEEEEEEeeEEEHHHHHHHHHHHHHhhhccccccc---ccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHH
Confidence 3455667899999999999999999999999998754321000 0123589999999999999999999999999999
Q ss_pred hCCcEEEEEeCChhHHHHHHhcCCccccCCeeeecCHHHH
Q 005994 557 SRDIQIAISNLNHEVLLTLSKSGVVDLIGKEWYFVRAHDA 596 (666)
Q Consensus 557 ~~gi~v~la~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~A 596 (666)
++|++++++++++.+++.|+++|+.+.++++++|+|++||
T Consensus 78 ~~g~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~s~~~A 117 (117)
T PF01740_consen 78 RRGVQLVLVGLNPDVRRILERSGLIDFIPEDQIFPSVDDA 117 (117)
T ss_dssp HTTCEEEEESHHHHHHHHHHHTTGHHHSCGGEEESSHHHH
T ss_pred HCCCEEEEEECCHHHHHHHHHcCCChhcCCCCccCCHHHC
Confidence 9999999999999999999999999999999999999998
No 14
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=99.67 E-value=7.9e-16 Score=168.49 Aligned_cols=243 Identities=21% Similarity=0.245 Sum_probs=161.3
Q ss_pred ceeEEecccchhHHHHHHHhHHHHHHHhhhhHHhCcccCCCCccHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHhh
Q 005994 154 VWWIKYYSIYHAVISGFTTASAIVIALSQAKYFLGYDVARSSKIVPLIKSIILGADKFSWPPFLVGSIILAILLIMKQLG 233 (666)
Q Consensus 154 G~l~~~~~ip~~Vi~Gf~~gigl~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~ 233 (666)
+++.|+ +|+.|..+++.++|+.+....++++.|.... .+. ....++....++..++++.+....+.
T Consensus 113 ~~l~~~--~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (389)
T PF00860_consen 113 KRLRRL--FPPVVKGAVVLLIGLSLAPIGLKNAGGIWGN-PDG-----------LLVGDGKNLGLAVLTLLFILLLSLFL 178 (389)
T ss_dssp -HHHHH----HHHHHHHHHHHHHHHHHHHHHHTTSS----BTT------------B---HHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHH--hChhheEeeEeeehhhhhhhHhhcccccccc-ccc-----------cccccccccccccccchhhhhhhhhh
Confidence 699999 9999999999999999999999998876532 111 01123344556666666666665554
Q ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhhcCCCccee-eeccCC-CCC---CCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 005994 234 KSRKYLRFLRAAGPLTGVVLGTTIVKIYHPPSITL-VGDIPQ-GLP---NFSIPKSFECAMSLIPTAILITGVAILESVG 308 (666)
Q Consensus 234 ~~~~~~~~~~~p~~Li~vv~gt~~~~~~~~~~v~~-vg~ip~-glp---~~~~P~~~~~~~~ll~~a~~ia~v~~~es~~ 308 (666)
++ +.+..+.++++++|+++++.++..+.+. +.+.|. .+| ++.+|. .....+...+.++++.++|+++
T Consensus 179 ~~-----~~~~~ailigi~~g~i~~~~~g~~~~~~~~~~~~~~~~p~~~~~g~p~---f~~~~i~~~~~~~lv~~~es~G 250 (389)
T PF00860_consen 179 KG-----FLRKGAILIGIIAGWIVAAILGVVDFSPSVSSAPWFSLPSPFPFGWPS---FDPGAILTFLIFALVAMFESIG 250 (389)
T ss_dssp ST-----TTTTHHHHHHHHHHHHHHHHHHHTTSSH-HHHS-SS-----------------HHHHHHHTHHHHHHHHHHHH
T ss_pred hh-----hcccccchhhhhhhhhhhhcccccccCccccccccccccccccccccc---ccHHHHHHHHHHHHHHhhhhhh
Confidence 42 2234467999999999998877544443 444432 233 222331 2244555667788899999999
Q ss_pred HHHHHHhhcCCC----CChhhHHHHhhhhhhhhhccCCCCcccccchhhhhhhcCCccchHHHHHHHHHHHHHHH--hHH
Q 005994 309 IAKALAAKNGYE----LDSNQELFGLGVANILGSFFSAYPTTGSFSRSAVNHESGAKTGLSGVITGIIMACALLF--MTP 382 (666)
Q Consensus 309 ~~~~~a~~~~~~----~d~nrEL~a~GlaNi~sglfGg~P~~~s~srSav~~~sGarT~la~iv~g~~~ll~ll~--l~~ 382 (666)
+..+.++..+.+ .+.+|-+.++|++|+++|+||+.|.+....+.+....+|.++|.+++.++++.+++.++ ++|
T Consensus 251 ~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~t~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~ 330 (389)
T PF00860_consen 251 TIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSPTTTYSENAGGIAATGVASRRVGLTAGVILILFGLSPKFAP 330 (389)
T ss_dssp HHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHH
T ss_pred hHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCCCccccccchhhhhhccccceeeeHHHHHHHHHhhHHHHHH
Confidence 888888776544 44899999999999999999999997777777777779999999999999999888765 899
Q ss_pred HHhhhcHHHHHHHHHHHHhhccCHHHHHHHHhcCccC
Q 005994 383 LFEHIPQCALAAIVVSAVMGLVDYDEAIFLWHVDKKD 419 (666)
Q Consensus 383 ll~~IP~avLaaili~~~~~li~~~~~~~l~~~~~~d 419 (666)
++..||.++++|.+++ .++++-..+++.+...+..|
T Consensus 331 l~~~IP~~v~gg~~lv-~~g~i~~~gi~~i~~~~~~~ 366 (389)
T PF00860_consen 331 LFASIPSPVIGGPLLV-LFGMIMMSGIRNIDWVDLDS 366 (389)
T ss_dssp HHTTS-HHHHHHHHHH-HHHHHHHHHHHHHHHTTS-S
T ss_pred HHHHHHHHHhccchHH-HHHHHHHHHhHhheecccCc
Confidence 9999999999888776 44554466777666555543
No 15
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=99.61 E-value=2.7e-15 Score=133.71 Aligned_cols=102 Identities=19% Similarity=0.329 Sum_probs=92.6
Q ss_pred ccCcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcE
Q 005994 482 TYHGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQ 561 (666)
Q Consensus 482 ~~~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~ 561 (666)
+.+++.+++++|+|+|+|++.|++.+.+.... .+.+.+++||++|++||+||+++|.++.++++++|++
T Consensus 5 ~~~~~~vi~l~G~L~f~~~~~~~~~l~~~~~~-----------~~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~ 73 (106)
T TIGR02886 5 VKGDVLIVRLSGELDHHTAERVRRKIDDAIER-----------RPIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGE 73 (106)
T ss_pred EECCEEEEEEecccchhhHHHHHHHHHHHHHh-----------CCCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCE
Confidence 35689999999999999999999999887542 1247899999999999999999999999999999999
Q ss_pred EEEEeCChhHHHHHHhcCCccccCCeeeecCHHHHH
Q 005994 562 IAISNLNHEVLLTLSKSGVVDLIGKEWYFVRAHDAV 597 (666)
Q Consensus 562 v~la~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al 597 (666)
++++++++++++.|+++|+.+.+ ++|++.++|+
T Consensus 74 l~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~a~ 106 (106)
T TIGR02886 74 VIVCNVSPAVKRLFELSGLFKII---RIYESEEEAL 106 (106)
T ss_pred EEEEeCCHHHHHHHHHhCCceEE---EEcCChHHhC
Confidence 99999999999999999999888 4999998874
No 16
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=99.60 E-value=4.9e-15 Score=132.75 Aligned_cols=102 Identities=20% Similarity=0.223 Sum_probs=90.7
Q ss_pred cCcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEE
Q 005994 483 YHGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQI 562 (666)
Q Consensus 483 ~~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v 562 (666)
.+++.+++++|+|+|+|++.+++++.+...+ .+.+.||+||++|++||+||+++|.++.++++.+|+++
T Consensus 8 ~~~~~v~~l~G~L~~~~a~~~~~~l~~~~~~-----------~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l 76 (109)
T cd07041 8 WDGVLVLPLIGDLDDERAEQLQERLLEAISR-----------RRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGART 76 (109)
T ss_pred eCCEEEEeeeeeECHHHHHHHHHHHHHHHHH-----------cCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeE
Confidence 4689999999999999999999988765432 12468999999999999999999999999999999999
Q ss_pred EEEeCChhHHHHHHhcCCccccCCeeeecCHHHHH
Q 005994 563 AISNLNHEVLLTLSKSGVVDLIGKEWYFVRAHDAV 597 (666)
Q Consensus 563 ~la~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al 597 (666)
+++++++++++.|+++|+.+ +..++|+|++||+
T Consensus 77 ~l~g~~~~v~~~l~~~gl~~--~~~~~~~t~~~Al 109 (109)
T cd07041 77 ILTGIRPEVAQTLVELGIDL--SGIRTAATLQQAL 109 (109)
T ss_pred EEEeCCHHHHHHHHHhCCCh--hhceeeccHHHhC
Confidence 99999999999999999987 3446999999984
No 17
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=99.53 E-value=4.5e-14 Score=124.61 Aligned_cols=92 Identities=15% Similarity=0.235 Sum_probs=83.1
Q ss_pred ccCcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcE
Q 005994 482 TYHGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQ 561 (666)
Q Consensus 482 ~~~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~ 561 (666)
+.+++.+++++|+|+|+|+++|++.+.+.... ...+.+|+||++|++||+||+++|.++.++++++|++
T Consensus 5 ~~~~v~ii~~~G~l~f~~~~~~~~~l~~~~~~-----------~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~ 73 (100)
T cd06844 5 KVDDYWVVRLEGELDHHSVEQFKEELLHNITN-----------VAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQ 73 (100)
T ss_pred EECCEEEEEEEEEecHhhHHHHHHHHHHHHHh-----------CCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCE
Confidence 45789999999999999999999998765532 1247999999999999999999999999999999999
Q ss_pred EEEEeCChhHHHHHHhcCCcccc
Q 005994 562 IAISNLNHEVLLTLSKSGVVDLI 584 (666)
Q Consensus 562 v~la~~~~~v~~~L~~~Gl~~~i 584 (666)
++++++++++++.|+++|+.+.+
T Consensus 74 l~l~~~~~~v~~~l~~~gl~~~~ 96 (100)
T cd06844 74 FVLTGISPAVRITLTESGLDKGX 96 (100)
T ss_pred EEEECCCHHHHHHHHHhCchhhh
Confidence 99999999999999999997754
No 18
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=99.36 E-value=2.7e-12 Score=114.50 Aligned_cols=99 Identities=17% Similarity=0.329 Sum_probs=88.7
Q ss_pred ccCcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcE
Q 005994 482 TYHGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQ 561 (666)
Q Consensus 482 ~~~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~ 561 (666)
..+++.+++++|+++|.|++.+++.+.+.... ++.+.+++||++++++|++|+++|.++.++++++|++
T Consensus 9 ~~~~~~vi~~~G~l~~~~~~~~~~~l~~~~~~-----------~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~ 77 (108)
T TIGR00377 9 VQEGVVIVRLSGELDAHTAPLLREKVTPAAER-----------TGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQ 77 (108)
T ss_pred EECCEEEEEEecccccccHHHHHHHHHHHHHh-----------cCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCE
Confidence 34689999999999999999999999887642 1246899999999999999999999999999999999
Q ss_pred EEEEeCChhHHHHHHhcCCccccCCeeeecCHH
Q 005994 562 IAISNLNHEVLLTLSKSGVVDLIGKEWYFVRAH 594 (666)
Q Consensus 562 v~la~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~ 594 (666)
+.++++++++++.|+.+|+.+.++ +|+|.+
T Consensus 78 ~~l~~~~~~~~~~l~~~~l~~~~~---i~~~~~ 107 (108)
T TIGR00377 78 LVLVSVSPRVARLLDITGLLRIIP---IYPTVE 107 (108)
T ss_pred EEEEeCCHHHHHHHHHhChhheec---cCCCCC
Confidence 999999999999999999998775 777655
No 19
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.35 E-value=3.3e-11 Score=129.75 Aligned_cols=250 Identities=20% Similarity=0.243 Sum_probs=154.8
Q ss_pred ceeEEecccchhHHHHHHHhHHHHHHHhhhhHHhCcccCCCCccHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHhh
Q 005994 154 VWWIKYYSIYHAVISGFTTASAIVIALSQAKYFLGYDVARSSKIVPLIKSIILGADKFSWPPFLVGSIILAILLIMKQLG 233 (666)
Q Consensus 154 G~l~~~~~ip~~Vi~Gf~~gigl~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~ 233 (666)
+|+.|+ ||++|..|+++|+++.....-++.+.. ..+++...++..++.+|+.
T Consensus 127 ~rl~~~--IP~~Va~amLAGIlL~f~l~~~~a~~~--------------------------~pll~~~mll~~l~~~r~~ 178 (395)
T TIGR00843 127 AKLLKI--IPHGIAAAMLAGILFQFGLGAFAALDG--------------------------LFLICFSMLLCWLASKAFA 178 (395)
T ss_pred HHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------hHHHHHHHHHHHHHHHHhc
Confidence 899999 999999999999988775443333211 1123444444444444442
Q ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhhcCCCcceeeeccCCCCCCCCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005994 234 KSRKYLRFLRAAGPLTGVVLGTTIVKIYHPPSITLVGDIPQGLPNFSIPK-SFECAMSLIPTAILITGVAILESVGIAKA 312 (666)
Q Consensus 234 ~~~~~~~~~~~p~~Li~vv~gt~~~~~~~~~~v~~vg~ip~glp~~~~P~-~~~~~~~ll~~a~~ia~v~~~es~~~~~~ 312 (666)
+ .++.++++++|+++++..+..+...++. ....|.+..|. ++.. .+..++.+.++.+.....-.-+
T Consensus 179 P---------r~avl~aLlvG~iva~~~G~~~~~~~~~-~l~~p~~~~P~fs~~a---~~~l~lPl~~vtm~~qnlpgia 245 (395)
T TIGR00843 179 P---------RYAMIAALICGIAFSFALGDMNPTDLDF-KIALPQFIAPDFSFAH---SLNLALPLFLVSLAGQFAPGIA 245 (395)
T ss_pred c---------hHHHHHHHHHHHHHHHHhcCCCcccccc-ccccceeeCCCCCHHH---HHHHHHHHHHHHHHhcCchHHH
Confidence 2 2567899999999998877544332211 11124455663 2333 3333444444444322223334
Q ss_pred HHhhcCCCCChhhHHHHhhhhhhhhhccCCCC------cccccchhhhhhhcCCccchHHHHHHHHHHHHHHH---hHHH
Q 005994 313 LAAKNGYELDSNQELFGLGVANILGSFFSAYP------TTGSFSRSAVNHESGAKTGLSGVITGIIMACALLF---MTPL 383 (666)
Q Consensus 313 ~a~~~~~~~d~nrEL~a~GlaNi~sglfGg~P------~~~s~srSav~~~sGarT~la~iv~g~~~ll~ll~---l~~l 383 (666)
..+.+||+.+.++-+.+.|++|+++++|||++ .++-+....... -++|.-.+++..|++.+++.+| +..+
T Consensus 246 vl~aaGy~~p~~~~~~~tGl~sll~ApfGg~~~nlaaitaAic~G~~ah~-d~~rR~~a~i~~Gv~yll~glfag~i~~l 324 (395)
T TIGR00843 246 ALKAAGYNAPAKPIIAAAGLAALFAAFAGGISIGIAAITAAICMGKDAHE-DKDKRWIAAAAAGIFYLLAGLFAGAITAL 324 (395)
T ss_pred HHHHcCCCCCchHHHHHHHHHHHHHhccCCchhhhhHHhHHHhcCccccc-CcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999999999999 322222333333 3889999999999999999987 4568
Q ss_pred HhhhcHHHHHHHHHHHHhhccCHHHHHHHHhcCccCeeehhhhhhHHH----hhhh---HHHHHHHHHHHH
Q 005994 384 FEHIPQCALAAIVVSAVMGLVDYDEAIFLWHVDKKDFLLWTITSITTL----FLGI---EIGVLVGVGASL 447 (666)
Q Consensus 384 l~~IP~avLaaili~~~~~li~~~~~~~l~~~~~~d~~i~~~t~~~~l----~~~l---~~Gi~vGi~~sl 447 (666)
+..+|.+..+++-=.+.++-+. ..+..-.+ +.++..-.++||++|. ++|+ .+|+++|+...+
T Consensus 325 ~~~~P~~li~~laGlAll~~~~-~~l~~a~~-~~~~r~~a~~tflvtaSg~~~~gigaafWgl~~G~~~~~ 393 (395)
T TIGR00843 325 FAALPKELIAALAGLALLGAIA-GNIKIALH-EDQERDAALIAFLATASGLHFLGIGSAFWGLCAGGLAYF 393 (395)
T ss_pred HHHCCHHHHHHHHHHHHHHHHH-HHHHHHhc-CcchhHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHH
Confidence 8999998887755444444432 12222222 2333444555555544 4443 678888865543
No 20
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=99.31 E-value=1.9e-11 Score=108.36 Aligned_cols=99 Identities=34% Similarity=0.656 Sum_probs=86.8
Q ss_pred ccCcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcE
Q 005994 482 TYHGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQ 561 (666)
Q Consensus 482 ~~~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~ 561 (666)
..+++.+++++|+++|+|++.+++.+.+..... ...+.+|+||++++++|++|+++|.++.++++++|++
T Consensus 6 ~~~~~~v~~l~G~l~~~~~~~l~~~~~~~~~~~----------~~~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~~ 75 (107)
T cd07042 6 EPPGVLIYRIDGPLFFGNAEYFKDRLLRLVDED----------PPLKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVE 75 (107)
T ss_pred cCCCEEEEEecCceEeehHHHHHHHHHHHhccC----------CCceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCCE
Confidence 346899999999999999999999998765321 1136899999999999999999999999999999999
Q ss_pred EEEEeCChhHHHHHHhcCCccccCCeeee
Q 005994 562 IAISNLNHEVLLTLSKSGVVDLIGKEWYF 590 (666)
Q Consensus 562 v~la~~~~~v~~~L~~~Gl~~~i~~~~~f 590 (666)
+.++++++++++.+++.|+.+.++.+..+
T Consensus 76 ~~l~~~~~~~~~~l~~~g~~~~~~~~~~~ 104 (107)
T cd07042 76 LYLAGLNPQVRELLERAGLLDEIGEENFF 104 (107)
T ss_pred EEEecCCHHHHHHHHHcCcHHHhCcccce
Confidence 99999999999999999999887655444
No 21
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=99.21 E-value=5.1e-12 Score=107.03 Aligned_cols=38 Identities=32% Similarity=0.817 Sum_probs=37.1
Q ss_pred ccccccccCCCcchhhhhhhhhHHHHHHHhhhcccccc
Q 005994 98 LPCSRWIRTYKWREYFQVDLMAGTTVGIMLVPQLLSWQ 135 (666)
Q Consensus 98 ~p~~~wl~~y~~~~~l~~D~~AGitv~~~~iPq~maya 135 (666)
||+++|+++|+||+|+++|++||+|++++++||+||||
T Consensus 1 ~P~l~wl~~y~~k~~~~~D~~aGltva~~~iPq~~a~A 38 (84)
T PF13792_consen 1 FPILQWLPRYSWKSNLRGDLLAGLTVALVAIPQGMAYA 38 (84)
T ss_pred CCchhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999988999999999999999999999999
No 22
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=99.20 E-value=1.1e-10 Score=101.99 Aligned_cols=90 Identities=23% Similarity=0.366 Sum_probs=81.7
Q ss_pred CcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEE
Q 005994 484 HGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIA 563 (666)
Q Consensus 484 ~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~ 563 (666)
+++.+++++|+++|.|++.+.+.+.+.... ..+.+++|+++++++|++|+++|.++.++++++|+++.
T Consensus 7 ~~~~ii~l~G~l~~~~~~~~~~~~~~~~~~------------~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~ 74 (99)
T cd07043 7 GGVLVVRLSGELDAATAPELREALEELLAE------------GPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLV 74 (99)
T ss_pred CCEEEEEEeceecccchHHHHHHHHHHHHc------------CCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEE
Confidence 578999999999999999999998876532 13689999999999999999999999999999999999
Q ss_pred EEeCChhHHHHHHhcCCccccC
Q 005994 564 ISNLNHEVLLTLSKSGVVDLIG 585 (666)
Q Consensus 564 la~~~~~v~~~L~~~Gl~~~i~ 585 (666)
++++++++++.|++.|+.+.+.
T Consensus 75 i~~~~~~~~~~l~~~gl~~~~~ 96 (99)
T cd07043 75 LVNVSPAVRRVLELTGLDRLFP 96 (99)
T ss_pred EEcCCHHHHHHHHHhCcceeee
Confidence 9999999999999999977653
No 23
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.11 E-value=3.1e-09 Score=112.72 Aligned_cols=251 Identities=18% Similarity=0.216 Sum_probs=162.6
Q ss_pred ceeEEecccchhHHHHHHHhHHHHHHHhhhhHHhCcccCCCCccHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHhh
Q 005994 154 VWWIKYYSIYHAVISGFTTASAIVIALSQAKYFLGYDVARSSKIVPLIKSIILGADKFSWPPFLVGSIILAILLIMKQLG 233 (666)
Q Consensus 154 G~l~~~~~ip~~Vi~Gf~~gigl~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~ 233 (666)
++++++ ||.++..++++|+-+-....-++.+-. ...+....++..++.||+.
T Consensus 111 ~rl~~~--IP~~ia~AMLAGvLl~f~l~~f~a~~~--------------------------~P~l~~~ml~~~l~~~r~~ 162 (378)
T PF03594_consen 111 GRLMRR--IPPPIASAMLAGVLLPFGLAAFTALQA--------------------------DPLLVGPMLAVFLLARRFS 162 (378)
T ss_pred HHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHh--------------------------HHHHHHHHHHHHHHHHHHc
Confidence 999999 999999999999988776554443211 1233444455556667765
Q ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhhcCCCcceeeeccCCCCCCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005994 234 KSRKYLRFLRAAGPLTGVVLGTTIVKIYHPPSITLVGDIPQGLPNFSIP-KSFECAMSLIPTAILITGVAILESVGIAKA 312 (666)
Q Consensus 234 ~~~~~~~~~~~p~~Li~vv~gt~~~~~~~~~~v~~vg~ip~glp~~~~P-~~~~~~~~ll~~a~~ia~v~~~es~~~~~~ 312 (666)
+|+ +.+.+++.|..++...+..+...+.. ....|.+..| +++ ..++..++.+.++.+..--.-+-+
T Consensus 163 pr~---------av~~al~~g~~~a~~~g~~~~~~~~~-~~~~p~~~~P~Fs~---~a~v~lalPL~ivtmasQnlpG~a 229 (378)
T PF03594_consen 163 PRY---------AVLAALVAGVAVAALTGQLHPSALQL-SLAHPVFTTPEFSW---SALVSLALPLFIVTMASQNLPGIA 229 (378)
T ss_pred chh---------HHHHHHHHHHHHHHhcCCCCcccccc-ccceeEEECCcccH---HHHHHHHHHHHHHHHHhcchHHHH
Confidence 531 35666777777777665443322221 1123455566 333 344445666777766544444555
Q ss_pred HHhhcCCCCChhhHHHHhhhhhhhhhccCCCCcccccchhhhhhhc--CC---ccchHHHHHHHHHHHHHHH---hHHHH
Q 005994 313 LAAKNGYELDSNQELFGLGVANILGSFFSAYPTTGSFSRSAVNHES--GA---KTGLSGVITGIIMACALLF---MTPLF 384 (666)
Q Consensus 313 ~a~~~~~~~d~nrEL~a~GlaNi~sglfGg~P~~~s~srSav~~~s--Ga---rT~la~iv~g~~~ll~ll~---l~~ll 384 (666)
+-+.+||+.+.|+-+..-|++|++.++|||++.+-+-.-.++...- +. |--.+++..|++.+++.+| +..++
T Consensus 230 VL~a~GY~~p~~~~~~~tGl~s~l~ApfGg~~~nlAaitaAIc~g~eah~dp~rRy~Aav~~Gv~yll~Gl~a~~~v~l~ 309 (378)
T PF03594_consen 230 VLRAAGYQPPVNPLITVTGLASLLAAPFGGHAVNLAAITAAICAGPEAHPDPSRRYIAAVAAGVFYLLFGLFAAALVALF 309 (378)
T ss_pred HHHHcCCCCCchHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHcCCccCCCcccchHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5567899999999999999999999999999998777777776653 32 2338899999999999988 55688
Q ss_pred hhhcHHHHHHHHHHHHhhccCHHHHHHHHhcCccCeeehhhhhhHHH----hhhh---HHHHHHHHHHHH
Q 005994 385 EHIPQCALAAIVVSAVMGLVDYDEAIFLWHVDKKDFLLWTITSITTL----FLGI---EIGVLVGVGASL 447 (666)
Q Consensus 385 ~~IP~avLaaili~~~~~li~~~~~~~l~~~~~~d~~i~~~t~~~~l----~~~l---~~Gi~vGi~~sl 447 (666)
...|.+.++.+-=.+.++.+ -..+..-++.+ .+..-.++||++|. ++|+ .+|+++|++..+
T Consensus 310 ~~lP~~li~~lAGLALlg~l-~~sl~~A~~~~-~~r~aAlvtFlvtaSGisl~gIgaafWgLv~G~~~~~ 377 (378)
T PF03594_consen 310 AALPPALIAALAGLALLGTL-GGSLQTAFSDE-KYREAALVTFLVTASGISLLGIGAAFWGLVAGLLVHL 377 (378)
T ss_pred HhCCHHHHHHHHHHHHHHHH-HHHHHHHhcCc-chhHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh
Confidence 89999887765444444433 22333334322 22334445555443 4443 678888877654
No 24
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=99.04 E-value=1.8e-09 Score=98.16 Aligned_cols=88 Identities=19% Similarity=0.300 Sum_probs=79.5
Q ss_pred EEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEE
Q 005994 486 IVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAIS 565 (666)
Q Consensus 486 i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la 565 (666)
+.++.+.|.|+..++..+++.+.+..... +.+.+++|+++|+|+|++|++.|....+.++.+|+++.++
T Consensus 14 ~~vl~l~G~lD~~~a~~~~e~~~~~~~~~-----------~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~ 82 (117)
T COG1366 14 ILVLPLIGELDAARAPALKETLLEVIAAS-----------GARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLV 82 (117)
T ss_pred EEEEEeeEEEchHHHHHHHHHHHHHHhcC-----------CCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEE
Confidence 37999999999999999999998665431 2356999999999999999999999999999999999999
Q ss_pred eCChhHHHHHHhcCCcccc
Q 005994 566 NLNHEVLLTLSKSGVVDLI 584 (666)
Q Consensus 566 ~~~~~v~~~L~~~Gl~~~i 584 (666)
+++|++++.++.+|+.+.+
T Consensus 83 ~i~p~v~~~~~~~gl~~~~ 101 (117)
T COG1366 83 GIQPEVARTLELTGLDKSF 101 (117)
T ss_pred eCCHHHHHHHHHhCchhhc
Confidence 9999999999999998764
No 25
>PF13466 STAS_2: STAS domain
Probab=98.89 E-value=8.9e-09 Score=86.76 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=73.1
Q ss_pred EEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 005994 489 VRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLN 568 (666)
Q Consensus 489 irl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~ 568 (666)
+++.|.+++.+++.+++.+.+.... + +.+++|+++|+++|++|++.|....+.++++|.++.+.+++
T Consensus 1 l~l~G~l~~~~~~~l~~~l~~~~~~------------~-~~v~lDls~v~~iDsagl~lL~~~~~~~~~~g~~~~l~~~~ 67 (80)
T PF13466_consen 1 LRLSGELDIATAPELRQALQALLAS------------G-RPVVLDLSGVEFIDSAGLQLLLAAARRARARGRQLRLTGPS 67 (80)
T ss_pred CEEEEEEeHHHHHHHHHHHHHHHcC------------C-CeEEEECCCCCeecHHHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4789999999999999999987632 2 57999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCC
Q 005994 569 HEVLLTLSKSGV 580 (666)
Q Consensus 569 ~~v~~~L~~~Gl 580 (666)
+.+++.++..|+
T Consensus 68 ~~~~~ll~~~gl 79 (80)
T PF13466_consen 68 PALRRLLELLGL 79 (80)
T ss_pred HHHHHHHHHhCc
Confidence 999999999987
No 26
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=98.53 E-value=9.6e-06 Score=95.56 Aligned_cols=247 Identities=12% Similarity=0.156 Sum_probs=152.2
Q ss_pred ceeEEecccchhHHHHHHHhHHHHHHHhhhhHHhCcccCCC--Ccc------H-----HHH-----HHHH------h---
Q 005994 154 VWWIKYYSIYHAVISGFTTASAIVIALSQAKYFLGYDVARS--SKI------V-----PLI-----KSII------L--- 206 (666)
Q Consensus 154 G~l~~~~~ip~~Vi~Gf~~gigl~I~~~ql~~~~G~~~~~~--~~~------~-----~~~-----~~~~------~--- 206 (666)
.++++| +.+----.|..=|+++.+...++.+...-.... ..+ . ... .... .
T Consensus 476 s~lvry--iTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (900)
T TIGR00834 476 SFLVRY--ISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPKPQGPSVSALLEKDCSKLGGTLGGNN 553 (900)
T ss_pred HHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccccccccc
Confidence 788999 999999999999999999888887754311000 000 0 000 0000 0
Q ss_pred --hcCCCCchhHHHHHHHHHHHHHHHHhhhhh--h-hh-hhhcchhhHHHHHHHHHhhhhcCCCcceeeeccCCCCCCCC
Q 005994 207 --GADKFSWPPFLVGSIILAILLIMKQLGKSR--K-YL-RFLRAAGPLTGVVLGTTIVKIYHPPSITLVGDIPQGLPNFS 280 (666)
Q Consensus 207 --~~~~~~~~~~~lg~~~l~~l~~~~~~~~~~--~-~~-~~~~~p~~Li~vv~gt~~~~~~~~~~v~~vg~ip~glp~~~ 280 (666)
...+.-..++++.+.++.+.+.++++++.. + +. +++.--++.+++++.+.+.+.++...... -.+|.++++-.
T Consensus 554 c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~v~~~~~~v~~~k-l~Vp~~f~pt~ 632 (900)
T TIGR00834 554 CRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIGDTYTQK-LSVPSGLKVTN 632 (900)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHHHHHHHhccCcccc-cCCCCCcCCCC
Confidence 000111234556666666666666654321 0 00 12222355667777777777655222111 12444432110
Q ss_pred -------C-Cc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----CChhhHHHHhhhhhhhhhccCC
Q 005994 281 -------I-PK------SFECAMSLIPTAILITGVAILESVGIAKALAAKNGYE----LDSNQELFGLGVANILGSFFSA 342 (666)
Q Consensus 281 -------~-P~------~~~~~~~ll~~a~~ia~v~~~es~~~~~~~a~~~~~~----~d~nrEL~a~GlaNi~sglfGg 342 (666)
+ |. .+......++.|+.++++-|+|+-.++....++ .++ .-.+-+|+-+|+.|.++|+||=
T Consensus 633 p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~~-e~kLkKgsgyH~Dllllg~~~~v~sllGL 711 (900)
T TIGR00834 633 PSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIVSKK-ERKLKKGSGFHLDLLLVVGMGGVAALFGL 711 (900)
T ss_pred CCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcCc-cccCCCCcccchHHHHHHHHHHHHHhcCC
Confidence 0 10 112234455678889999999988666655543 222 2246689999999999999998
Q ss_pred CCcccccchhhhhhhc----------C-------C-ccchHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHHhhcc
Q 005994 343 YPTTGSFSRSAVNHES----------G-------A-KTGLSGVITGIIMACALLFMTPLFEHIPQCALAAIVVSAVMGLV 404 (666)
Q Consensus 343 ~P~~~s~srSav~~~s----------G-------a-rT~la~iv~g~~~ll~ll~l~~ll~~IP~avLaaili~~~~~li 404 (666)
-+.+|+..+|.....+ | + -+|+++++.++++.+.+ +++|++.+||++||.|+.++.|+.-+
T Consensus 712 Pw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lLiglsv-~~~PvL~~IP~aVL~GvFlYMGv~SL 790 (900)
T TIGR00834 712 PWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAVLVGLSI-LMEPILKRIPLAVLFGIFLYMGVTSL 790 (900)
T ss_pred CcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHHHHHHHH-HHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 8888888887765542 2 2 27899999998776655 68899999999999999999998765
Q ss_pred C
Q 005994 405 D 405 (666)
Q Consensus 405 ~ 405 (666)
.
T Consensus 791 ~ 791 (900)
T TIGR00834 791 S 791 (900)
T ss_pred c
Confidence 3
No 27
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.45 E-value=7e-06 Score=85.70 Aligned_cols=253 Identities=15% Similarity=0.207 Sum_probs=147.7
Q ss_pred ceeEEecccchhHHHHHHHhHHHHHHHhhhhHHhCcccCCCCccHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHhh
Q 005994 154 VWWIKYYSIYHAVISGFTTASAIVIALSQAKYFLGYDVARSSKIVPLIKSIILGADKFSWPPFLVGSIILAILLIMKQLG 233 (666)
Q Consensus 154 G~l~~~~~ip~~Vi~Gf~~gigl~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~ 233 (666)
+|+++- ||+++..++.+||=+-+....++.+-+ ..++.+..++..++.|.+.
T Consensus 126 ~rl~~~--IP~sla~AmlAGILL~F~l~a~~a~~~--------------------------~p~l~lpmv~~~ll~r~f~ 177 (402)
T COG3135 126 TRLMRI--IPPSLAAAMLAGILLRFGLKAFKALPT--------------------------QPLLVLPMVLAYLLARVFA 177 (402)
T ss_pred HHHHHh--CChHHHHHHHHHHHHHHHHHHHhccCC--------------------------ChHHHHHHHHHHHHHHHcC
Confidence 999999 999999999999877666554443211 1122333334444556665
Q ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhhcCCCcce-eeeccCCCCCCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005994 234 KSRKYLRFLRAAGPLTGVVLGTTIVKIYHPPSIT-LVGDIPQGLPNFSIP-KSFECAMSLIPTAILITGVAILESVGIAK 311 (666)
Q Consensus 234 ~~~~~~~~~~~p~~Li~vv~gt~~~~~~~~~~v~-~vg~ip~glp~~~~P-~~~~~~~~ll~~a~~ia~v~~~es~~~~~ 311 (666)
+| +..+.++++|..++...+..+.. ...++ ..|.+..| +++. .++..++.+.++.+..--.-+-
T Consensus 178 pr---------~aV~aalvvgv~va~~~G~~~~~~~~~~~--~~p~~v~P~Fs~~---A~l~lalPL~lvtmasQN~pGi 243 (402)
T COG3135 178 PR---------YAVIAALVVGVLVAALLGDLHTALVALEI--STPTWVTPEFSFA---AMLSLALPLFLVTMASQNLPGI 243 (402)
T ss_pred ch---------HHHHHHHHHHHHHHHHhCccccccccccc--CcceeeCCcccHH---HHHHHhHHHHHHHHHhccCccc
Confidence 43 24567777888777766543211 11111 23445555 2333 3444556666666543322233
Q ss_pred HHHhhcCCCCChhhHHHHhhhhhhhhhccCCCCcccccchhhhhhhc-----CCccchHHHHHHHHHHHHHHHhH---HH
Q 005994 312 ALAAKNGYELDSNQELFGLGVANILGSFFSAYPTTGSFSRSAVNHES-----GAKTGLSGVITGIIMACALLFMT---PL 383 (666)
Q Consensus 312 ~~a~~~~~~~d~nrEL~a~GlaNi~sglfGg~P~~~s~srSav~~~s-----GarT~la~iv~g~~~ll~ll~l~---~l 383 (666)
++=+-+||+.+++.-+.+-|+..+.++.||++.++-.-.--++...- -+|--.+++++|++-+++.+|.+ .+
T Consensus 244 AvLka~gY~pp~~pl~~~TGl~sll~ApfG~~t~nLaAItAAic~gpdaHpD~~rry~Aa~~agi~ylv~GlF~~~~~~l 323 (402)
T COG3135 244 AVLKAAGYQPPPSPLIVATGLASLLSAPFGGHTVNLAAITAAICTGPDAHPDPARRYTAALVAGIFYLLAGLFGGALVGL 323 (402)
T ss_pred eeehhcCCCCCCchHHHHhHHHHHHhcccccceecHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355899999999999999999999999999886544433333322 13445899999999999999844 56
Q ss_pred HhhhcHHHHHHHHHHHHhhccCHHHHHHHHh-cCccCe--eehhhhhhHHHhhhh---HHHHHHHHHHHHHH
Q 005994 384 FEHIPQCALAAIVVSAVMGLVDYDEAIFLWH-VDKKDF--LLWTITSITTLFLGI---EIGVLVGVGASLAF 449 (666)
Q Consensus 384 l~~IP~avLaaili~~~~~li~~~~~~~l~~-~~~~d~--~i~~~t~~~~l~~~l---~~Gi~vGi~~sl~~ 449 (666)
+..+|.+.++.+-=.+..+-+ ...+..-.+ -+.+|. +.+++|....-++|+ .+|++.|.+...+.
T Consensus 324 ~~alP~~li~~lAGLALlg~~-~~~l~~A~~~~~~R~aAlvtF~VTaSG~tl~GIgaafWGLvaG~~~~~L~ 394 (402)
T COG3135 324 MAALPASLIAALAGLALLGTL-GNSLQAALKDEREREAALVTFLVTASGLTLFGIGAAFWGLVAGLLVLALL 394 (402)
T ss_pred HHHCcHHHHHHHHHHHHHHHH-HHHHHHHhcCcccchhhhhheeehhccceeecccHHHHHHHHHHHHHHHH
Confidence 788998766543322222222 122333333 222332 233444443335544 56777766554433
No 28
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=98.22 E-value=0.00012 Score=84.55 Aligned_cols=279 Identities=15% Similarity=0.173 Sum_probs=165.4
Q ss_pred ceeEEecccchhHHHHHHHhHHHHHHHhhhhHHhCcccCCCCccH-----------HHHHHHHhhc------CCCCchhH
Q 005994 154 VWWIKYYSIYHAVISGFTTASAIVIALSQAKYFLGYDVARSSKIV-----------PLIKSIILGA------DKFSWPPF 216 (666)
Q Consensus 154 G~l~~~~~ip~~Vi~Gf~~gigl~I~~~ql~~~~G~~~~~~~~~~-----------~~~~~~~~~~------~~~~~~~~ 216 (666)
..+++| +.+.-=-.|-.=|+++.+.-.++.+.++......... ..-.+.-... .+.-...+
T Consensus 467 s~lv~~--~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~llsl 544 (876)
T KOG1172|consen 467 SSLVKY--ITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFDSKPNPGADWSGPECESVSGTLLGSSCRPDTALLSL 544 (876)
T ss_pred hHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCcccccccccccccCcccCCCcCCcchHHHHH
Confidence 899999 9999999999999999999999876654321110000 0000000000 01111233
Q ss_pred HHHHHHHHHHHHHHHhhhhh----hhhhhhcchhhHHHHHHHHHhhhhcCC---CcceeeeccCCCCCCC-------C--
Q 005994 217 LVGSIILAILLIMKQLGKSR----KYLRFLRAAGPLTGVVLGTTIVKIYHP---PSITLVGDIPQGLPNF-------S-- 280 (666)
Q Consensus 217 ~lg~~~l~~l~~~~~~~~~~----~~~~~~~~p~~Li~vv~gt~~~~~~~~---~~v~~vg~ip~glp~~-------~-- 280 (666)
++.+.++.+-+.+|++++.+ +.-.++.--+..+++++-+.+.+..+. +.+. .|..+|.. .
T Consensus 545 il~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~~~~kl~----vp~~~~~t~~~~rgw~v~ 620 (876)
T KOG1172|consen 545 ILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLIDYFGGSVETPKLP----VPSVFPPTWPFDRGWFVP 620 (876)
T ss_pred HHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHHhhccccCCCccc----cCcCCCCCCcccCCeeeC
Confidence 44444454445555554311 000122223444555555555555432 1221 22222111 0
Q ss_pred --CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----ChhhHHHHhhhhhhhhhccCCCCcccccchhhh
Q 005994 281 --IPKSFECAMSLIPTAILITGVAILESVGIAKALAAKNGYEL----DSNQELFGLGVANILGSFFSAYPTTGSFSRSAV 354 (666)
Q Consensus 281 --~P~~~~~~~~ll~~a~~ia~v~~~es~~~~~~~a~~~~~~~----d~nrEL~a~GlaNi~sglfGg~P~~~s~srSav 354 (666)
.|..+......+..|+.++++-|+|+-.++....++ .++. -..=+|+-+|+.|.++|+||=-+.+|+..+|-.
T Consensus 621 ~~~~~P~~~~~~A~ipalll~iLiFmDqqIts~iv~rk-e~kLKKgsgyH~DLlllgil~~icsllGLPw~~~a~p~S~~ 699 (876)
T KOG1172|consen 621 PFGKNPWWYVFAALIPALLLTILIFMDQQITAVIVNRK-ENKLKKGSGYHLDLLLLGILTLICSLLGLPWSNAATVQSPM 699 (876)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhhcc-cccCCCCcchhHHHHHHHHHHHHHHhcCCCccccccccCHH
Confidence 122244445556668889999999998666655443 2222 235579999999999999999999999999877
Q ss_pred hhhc-----------------CCc-cchHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHHhhccCHH----HHHHH
Q 005994 355 NHES-----------------GAK-TGLSGVITGIIMACALLFMTPLFEHIPQCALAAIVVSAVMGLVDYD----EAIFL 412 (666)
Q Consensus 355 ~~~s-----------------Gar-T~la~iv~g~~~ll~ll~l~~ll~~IP~avLaaili~~~~~li~~~----~~~~l 412 (666)
..++ |+| .|++|++.++++.+. .++.|++..||++||.|+-.+.|+.=+.-. .++.+
T Consensus 700 H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llvgls-~~~~pvL~~IP~~VL~GvFlYMgv~SL~Gnqf~eRl~Ll 778 (876)
T KOG1172|consen 700 HTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLVGLS-VLLLPVLKLIPMPVLYGVFLYMGVSSLPGNQFFERLLLL 778 (876)
T ss_pred HHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHhhccCCccHHHHHHHHH
Confidence 6653 333 589999999999944 479999999999999999999988755322 22222
Q ss_pred HhcCc-----------cCeeehhhhhhHHHhhhhHHHHH
Q 005994 413 WHVDK-----------KDFLLWTITSITTLFLGIEIGVL 440 (666)
Q Consensus 413 ~~~~~-----------~d~~i~~~t~~~~l~~~l~~Gi~ 440 (666)
+.-.+ .-.-+.+.|.+=.+.+.+.++|-
T Consensus 779 f~p~k~~p~~~ylrhv~~r~vhlFT~~Ql~~l~ll~~i~ 817 (876)
T KOG1172|consen 779 FMPPKHRPDTLYLRHVPFRRVHLFTLIQLLCLALLWAIK 817 (876)
T ss_pred cCCcccCCCccceeecchhhHHHHHHHHHHHHHHHHhhc
Confidence 21100 01245666666666667766664
No 29
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=98.03 E-value=9e-05 Score=80.61 Aligned_cols=119 Identities=18% Similarity=0.129 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC----CCChhhHHHHhhhhhhhhhccCCCCcccccchhhhh-hhcCCccchHHHHHH
Q 005994 296 ILITGVAILESVGIAKALAAKNGY----ELDSNQELFGLGVANILGSFFSAYPTTGSFSRSAVN-HESGAKTGLSGVITG 370 (666)
Q Consensus 296 ~~ia~v~~~es~~~~~~~a~~~~~----~~d~nrEL~a~GlaNi~sglfGg~P~~~s~srSav~-~~sGarT~la~iv~g 370 (666)
++-++++++|+++.-.+.++..+. +...||....+|++.+++|+||.-.+++.+++...- .-+...||.+--++|
T Consensus 276 ~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~aa 355 (510)
T KOG1292|consen 276 MAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLLAGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIAA 355 (510)
T ss_pred HHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHHHHhhCCCccceeeccceeeEeeeeeeeeeehhhhH
Confidence 456678899999876666655433 234699999999999999999977666666654433 337778899999999
Q ss_pred HHHHHHHHH--hHHHHhhhcHHHHHHHHHHHHhhccCHHHHHHHHhc
Q 005994 371 IIMACALLF--MTPLFEHIPQCALAAIVVSAVMGLVDYDEAIFLWHV 415 (666)
Q Consensus 371 ~~~ll~ll~--l~~ll~~IP~avLaaili~~~~~li~~~~~~~l~~~ 415 (666)
.+++++..+ ++.+++.||.++.||++-+ ++.|+.--++..+.-+
T Consensus 356 ~fmI~~~i~gKFgA~fAsIP~piv~~l~c~-~~~mv~avgLSnLQf~ 401 (510)
T KOG1292|consen 356 GFMIFFGIFGKFGAFFASIPDPIVGGLLCI-LFGMVGAVGLSNLQFV 401 (510)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHH-HHHHHHHHhhhhheee
Confidence 999988877 9999999999999998765 7888755555555433
No 30
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=97.43 E-value=0.00075 Score=58.10 Aligned_cols=83 Identities=11% Similarity=0.123 Sum_probs=68.6
Q ss_pred EEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 005994 489 VRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLN 568 (666)
Q Consensus 489 irl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~ 568 (666)
+.+.|+|+=-+...+=........ +...+-+|+++|..+||+|+-.|.++.+.++++|+.+.+.+++
T Consensus 14 L~LsGeL~r~tl~~lw~~r~~~~~-------------~~~~~~idLs~v~rvDSaglALL~~~~~~~k~~g~~~~L~~~p 80 (99)
T COG3113 14 LVLSGELDRDTLLPLWSQREAQLK-------------QLDTVRIDLSGVSRVDSAGLALLLHLIRLAKKQGNAVTLTGVP 80 (99)
T ss_pred EEEeccccHHHHHHHHHHHHHHcc-------------ccCeEEEehhhcceechHHHHHHHHHHHHHHHcCCeeEEecCc
Confidence 567899987766665555444321 2257889999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCcccc
Q 005994 569 HEVLLTLSKSGVVDLI 584 (666)
Q Consensus 569 ~~v~~~L~~~Gl~~~i 584 (666)
++++...+..|+.+.+
T Consensus 81 ~~L~tLa~Ly~l~~~l 96 (99)
T COG3113 81 EQLRTLAELYNLSDWL 96 (99)
T ss_pred HHHHHHHHHhCcHhhh
Confidence 9999999988886544
No 31
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=97.34 E-value=0.0051 Score=64.94 Aligned_cols=130 Identities=15% Similarity=0.160 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCCCCChhhHHHHhhhhhhhhhccCCCCcccccchhhhhhhc
Q 005994 285 FECAMSLIPTAILITGVAILESVGIAKALAAK------NGYELDSNQELFGLGVANILGSFFSAYPTTGSFSRSAVNHES 358 (666)
Q Consensus 285 ~~~~~~ll~~a~~ia~v~~~es~~~~~~~a~~------~~~~~d~nrEL~a~GlaNi~sglfGg~P~~~s~srSav~~~s 358 (666)
++.+...+|.|+.....=.-|.++ -+.|.+. .+...|.|+.+....+=|++++.+||--.++|..--.+- .+
T Consensus 280 ~~hfiav~PFAiLAVaMWSpDflg-hrvFqelnypk~~~kvlMnvDDTm~~~siRQ~vGs~lGGgN~~SsWgTymIP-aa 357 (492)
T PF11840_consen 280 LEHFIAVLPFAILAVAMWSPDFLG-HRVFQELNYPKETKKVLMNVDDTMTMCSIRQIVGSILGGGNIASSWGTYMIP-AA 357 (492)
T ss_pred HHHHHHhccHHHHHHHHhCchHHH-HHHHHHhcCchhhcceeecccchhHHHHHHHHHhhcccCCcccccchhhhhh-HH
Confidence 555666667554332222233332 2223221 233468889999999999999999997775555443333 33
Q ss_pred CCcc--chHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHHhhccCHHHHHHHHhcCc
Q 005994 359 GAKT--GLSGVITGIIMACALLFMTPLFEHIPQCALAAIVVSAVMGLVDYDEAIFLWHVDK 417 (666)
Q Consensus 359 GarT--~la~iv~g~~~ll~ll~l~~ll~~IP~avLaaili~~~~~li~~~~~~~l~~~~~ 417 (666)
=+|- +-..+.+|++++++.+..-|.=-.+=.+++...+++-+|-=+-..++ +.||-++
T Consensus 358 IaKRPIpggAiLtg~~Ci~~av~GyPMdlavw~Pvl~vALlvGVflPLleAGm-qm~r~~k 417 (492)
T PF11840_consen 358 IAKRPIPGGAILTGLLCIVAAVWGYPMDLAVWPPVLRVALLVGVFLPLLEAGM-QMTRKGK 417 (492)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhcCcchhhhcccHHHHHHHHHHHHHHHHHHH-HHHhcCC
Confidence 3333 45678899999888877666332333345555566533322223344 4455444
No 32
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=96.90 E-value=0.00023 Score=79.90 Aligned_cols=113 Identities=18% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCChhhHHHHhhhhhhhhhccCCCCcccccchhhhhhhc----------
Q 005994 292 IPTAILITGVAILESVGIAKALAAKNG---YELDSNQELFGLGVANILGSFFSAYPTTGSFSRSAVNHES---------- 358 (666)
Q Consensus 292 l~~a~~ia~v~~~es~~~~~~~a~~~~---~~~d~nrEL~a~GlaNi~sglfGg~P~~~s~srSav~~~s---------- 358 (666)
+..|+.++++-++|.-.++....++.. +..-.+-+|+-.|+.|.++|++|=-..+++..+|....++
T Consensus 339 ~~palll~iL~F~DqnIts~ivn~~e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~p 418 (510)
T PF00955_consen 339 IIPALLLTILFFMDQNITSLIVNRPENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAP 418 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHhHHHhCChhhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccC
Confidence 444777888889987655544433211 1122345789999999999999987788888887665542
Q ss_pred CCc--------cchHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHHhhccC
Q 005994 359 GAK--------TGLSGVITGIIMACALLFMTPLFEHIPQCALAAIVVSAVMGLVD 405 (666)
Q Consensus 359 Gar--------T~la~iv~g~~~ll~ll~l~~ll~~IP~avLaaili~~~~~li~ 405 (666)
|-+ +|+++++.++++.+.+ ++.|++++||++||.|+.++.|+.-++
T Consensus 419 Ge~~~i~~V~EqRvT~l~~~~Ligls~-~l~pvL~~IP~~VL~GvFlymG~~sL~ 472 (510)
T PF00955_consen 419 GEKPKIVGVREQRVTGLLVHLLIGLSL-FLLPVLKLIPMPVLYGVFLYMGVTSLS 472 (510)
T ss_dssp -------------------------------------------------------
T ss_pred CCCCeeCeEEEecccHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhheeeeec
Confidence 222 6899999998776655 678999999999999999998877554
No 33
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=94.15 E-value=0.058 Score=47.68 Aligned_cols=105 Identities=12% Similarity=0.014 Sum_probs=67.9
Q ss_pred cEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcC-CCCccCHHHHHHHHHHHHHHHhCCcEEE
Q 005994 485 GIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMA-PVTYIDSSAVQALKDLYQEYKSRDIQIA 563 (666)
Q Consensus 485 ~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls-~V~~IDsSgl~~L~~l~~~~~~~gi~v~ 563 (666)
+++.++++|.+.-.....+.+.+.+....++ .-.+.+|++ .+..++..+......+......+=.++.
T Consensus 1 ~il~v~~~g~~t~ed~~~~~~~~~~~~~~~~-----------~~~ll~d~~~~~~~~~~~a~~~~~~~~~~~~~~~~r~A 69 (109)
T PF11964_consen 1 NILAVRVSGKLTEEDYKELLPALEELIADHG-----------KIRLLVDLRRDFEGWSPEARWEDAKFGLKHLKHFRRIA 69 (109)
T ss_dssp S-EEEEEEEEE-HHHHHHHHHHHHHHHTTSS-----------SEEEEEEEC-CEEEEHHHHHHHHHHHHCCCCGGEEEEE
T ss_pred CEEEEEEeeeeCHHHHHHHHHHHHHHHhcCC-----------ceEEEEEecCccCCCCHHHHHHHHHhchhhhcccCEEE
Confidence 4678999999999998888888888765322 257999999 8888888766655543333222234667
Q ss_pred EEeCChhHHHHHHhcCCccccCCeeee--cCHHHHHHHHH
Q 005994 564 ISNLNHEVLLTLSKSGVVDLIGKEWYF--VRAHDAVQVCL 601 (666)
Q Consensus 564 la~~~~~v~~~L~~~Gl~~~i~~~~~f--~s~~~Al~~ae 601 (666)
+++-++..+...+..+.. .-.+-++| .+.++|.+|.+
T Consensus 70 vV~~~~~~~~~~~~~~~~-~~~~~~~F~~~~~~~A~~WL~ 108 (109)
T PF11964_consen 70 VVGDSEWIRMIANFFAAF-PPIEVRYFPPDEEEEALAWLR 108 (109)
T ss_dssp EE-SSCCCHHHHHHHHHH--SSEEEEE--SSHHHHHHHHC
T ss_pred EEECcHHHHHHHHHHHhc-CCCceEEECCCCHHHHHHHHc
Confidence 777666444433322222 22245799 99999999974
No 34
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=93.33 E-value=1.3 Score=50.95 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHhhhhhhhhhccCCCCcccccchhhhh--hhcCC----c
Q 005994 288 AMSLIPTAILITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANILGSFFSAYPTTGSFSRSAVN--HESGA----K 361 (666)
Q Consensus 288 ~~~ll~~a~~ia~v~~~es~~~~~~~a~~~~~~~d~nrEL~a~GlaNi~sglfGg~P~~~s~srSav~--~~sGa----r 361 (666)
+..=+...++++++.+=++++.++. .| .++-.-|.+-=++-++.++|||.|.-.+--.++.. ..+.. .
T Consensus 21 l~~Dl~AGltva~valP~ama~a~~----aG--v~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~ 94 (554)
T COG0659 21 LRGDLLAGLTVAAVALPLAMAFAIA----AG--VPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVE 94 (554)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHH----cC--CCHHHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHH
Confidence 3333456677888888887776652 33 78999999999999999999998874222221111 11111 2
Q ss_pred c-----chHHHHHHHHHHHHHHH-hHHHHhhhcHHHHHHHHHHHHhhccCHHHHHHHHhcC
Q 005994 362 T-----GLSGVITGIIMACALLF-MTPLFEHIPQCALAAIVVSAVMGLVDYDEAIFLWHVD 416 (666)
Q Consensus 362 T-----~la~iv~g~~~ll~ll~-l~~ll~~IP~avLaaili~~~~~li~~~~~~~l~~~~ 416 (666)
+ -.+.+.+|++.+++.++ ++.++.+||.+|+.|.+--+++-++ ..++..+...+
T Consensus 95 ~g~~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~-~~Ql~~~~G~~ 154 (554)
T COG0659 95 TGLALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILII-LTQLPVLLGLA 154 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHH-HHHHHHHcCCC
Confidence 2 24556677777777776 8999999999999997775555544 44444444433
No 35
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=93.00 E-value=3.2 Score=48.08 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHhhhhhhhhhccCCCCcccccchhhhhh-------hc
Q 005994 286 ECAMSLIPTAILITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANILGSFFSAYPTTGSFSRSAVNH-------ES 358 (666)
Q Consensus 286 ~~~~~ll~~a~~ia~v~~~es~~~~~~~a~~~~~~~d~nrEL~a~GlaNi~sglfGg~P~~~s~srSav~~-------~s 358 (666)
..+..=+..+++++++..-++++-+.. + ..++.--|.+-.+..++.++||+.|...+-.-++... ..
T Consensus 12 ~~l~~Di~aGltv~~~~iP~~~ayA~l-a-----glpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~~~ 85 (563)
T TIGR00815 12 KKFKGDLMAGLTVGILLIPQAMAYAIL-A-----GLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARV 85 (563)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH-c-----CCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHHHh
Confidence 334444556778888888888876543 2 3566677999999999999999987643322222211 12
Q ss_pred CCc-cc---------hHHHHHHHHHHHHHHH-hHHHHhhhcHHHHHHHHHHHHhhcc
Q 005994 359 GAK-TG---------LSGVITGIIMACALLF-MTPLFEHIPQCALAAIVVSAVMGLV 404 (666)
Q Consensus 359 Gar-T~---------la~iv~g~~~ll~ll~-l~~ll~~IP~avLaaili~~~~~li 404 (666)
|.. +. ..++.+|++.+++.++ ++.+.++||.+++.|.+--+++.++
T Consensus 86 ~~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~ 142 (563)
T TIGR00815 86 GLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIG 142 (563)
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 222 21 6778888888888877 8899999999999998876666654
No 36
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=86.23 E-value=1.7 Score=38.19 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=57.3
Q ss_pred EEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCC-----hhHHHHHHhcCCccccCCeeeecCHHHHHHHHHHh
Q 005994 530 VILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLN-----HEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCLQH 603 (666)
Q Consensus 530 VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~-----~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae~~ 603 (666)
+++|+.+|-+-+...+.-=.+..+.++++|+++++..-+ .+..+.|++.|+. +.+++++.+...+.++..++
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~--~~~~~i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP--VDEDEIITSGMAAAEYLKEH 77 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT----GGGEEEHHHHHHHHHHHH
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC--CCcCEEEChHHHHHHHHHhc
Confidence 579999999999888888889999999999999888543 4788899999986 45678988888887777664
No 37
>PRK11660 putative transporter; Provisional
Probab=85.30 E-value=14 Score=42.93 Aligned_cols=110 Identities=19% Similarity=0.159 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHhhhhhhhhhccCCCCcccccchhhh--hh-----hcCC
Q 005994 288 AMSLIPTAILITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANILGSFFSAYPTTGSFSRSAV--NH-----ESGA 360 (666)
Q Consensus 288 ~~~ll~~a~~ia~v~~~es~~~~~~~a~~~~~~~d~nrEL~a~GlaNi~sglfGg~P~~~s~srSav--~~-----~sGa 360 (666)
+..=+..+++++++..-++++.+.. .| ..+---|.+--++.++.++||+.+...+-.-++. .. +.|.
T Consensus 29 l~~D~iAGltv~~~~iPq~mayA~l----ag--~pp~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~~~~~ 102 (568)
T PRK11660 29 FTRDLIAGITVGIIAIPLAMALAIA----SG--VPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGL 102 (568)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH----cC--CChHHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHHHhhH
Confidence 3333456788888899998876642 33 3444569999999999999999876433222211 11 1111
Q ss_pred c-cchHHHHHHHHHHHHHHH-hHHHHhhhcHHHHHHHHHHHHhhc
Q 005994 361 K-TGLSGVITGIIMACALLF-MTPLFEHIPQCALAAIVVSAVMGL 403 (666)
Q Consensus 361 r-T~la~iv~g~~~ll~ll~-l~~ll~~IP~avLaaili~~~~~l 403 (666)
. .-.+.+++|++.+++.++ ++.+.++||.+++.|.+--+++-+
T Consensus 103 ~~~~~~~~l~Gii~~l~gllrlG~l~~fip~pVi~Gf~~g~al~I 147 (568)
T PRK11660 103 AGLLVATLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIVI 147 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhcCcHHHHHHHHHHHHHHH
Confidence 1 123577888888888877 888999999999999877666543
No 38
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=83.81 E-value=5.2 Score=32.96 Aligned_cols=66 Identities=20% Similarity=0.238 Sum_probs=48.2
Q ss_pred cHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHH-HHHHHHHHHH--hCCcEEEEEeCChhHHHHH
Q 005994 499 NISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQ-ALKDLYQEYK--SRDIQIAISNLNHEVLLTL 575 (666)
Q Consensus 499 na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~-~L~~l~~~~~--~~gi~v~la~~~~~v~~~L 575 (666)
+...+++.+.+..... +.|+|||+++..+-++-++ ++..+++++. +-..++.+.+.++.+.+.+
T Consensus 2 ~G~~~~~~i~~~l~~~-------------~~V~lDF~gv~~~~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I 68 (74)
T PF14213_consen 2 DGERLRDEIEPALKEG-------------EKVVLDFEGVESITSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMI 68 (74)
T ss_pred ChHHHHHHHHHHHhcC-------------CeEEEECCCcccccHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHH
Confidence 3566777777766431 3599999999999888777 4566666544 3356888899999998887
Q ss_pred Hh
Q 005994 576 SK 577 (666)
Q Consensus 576 ~~ 577 (666)
++
T Consensus 69 ~~ 70 (74)
T PF14213_consen 69 KR 70 (74)
T ss_pred HH
Confidence 65
No 39
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=81.08 E-value=2.3 Score=42.19 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=61.7
Q ss_pred cceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeC-----ChhHHHHHHhcCCccccCCeeeecCHHHHHHHH
Q 005994 526 RIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNL-----NHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVC 600 (666)
Q Consensus 526 ~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~-----~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~a 600 (666)
.++-+.||++++-++.-.++--=.+..+.+++++..|.|+.- +..+.++|++.||. +.++++|.+.-.|.+.+
T Consensus 6 ~v~gvLlDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~--v~eeei~tsl~aa~~~~ 83 (262)
T KOG3040|consen 6 AVKGVLLDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD--VSEEEIFTSLPAARQYL 83 (262)
T ss_pred ccceEEEeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC--ccHHHhcCccHHHHHHH
Confidence 467899999999999877776667778888889999988743 35688899999984 34678999999999999
Q ss_pred HHh
Q 005994 601 LQH 603 (666)
Q Consensus 601 e~~ 603 (666)
+++
T Consensus 84 ~~~ 86 (262)
T KOG3040|consen 84 EEN 86 (262)
T ss_pred Hhc
Confidence 764
No 40
>PRK09928 choline transport protein BetT; Provisional
Probab=77.21 E-value=72 Score=37.68 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEe
Q 005994 502 FLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISN 566 (666)
Q Consensus 502 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~ 566 (666)
.-++||.+......+ ++ --.|++.++.-+++++.++++++|.+..+..
T Consensus 528 ~w~~RL~~~~~~p~~--------~~---------~~~f~~~~~~pA~~~v~~el~~~g~~~~~~~ 575 (679)
T PRK09928 528 NWKQRLSRVMNYPGT--------RY---------TRRMLDTVCRPAMEEVAQELRLRGAYVELNE 575 (679)
T ss_pred cHHHHHHHHhcCCCH--------HH---------HHHHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 478888877643211 11 2468999999999999999999999998864
No 41
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=69.98 E-value=63 Score=35.66 Aligned_cols=103 Identities=16% Similarity=0.128 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhh-------HHHHhhhhhhhhhccCCCCcccccchhhhhhh---cCCc
Q 005994 292 IPTAILITGVAILESVGIAKALAAKNGYELDSNQ-------ELFGLGVANILGSFFSAYPTTGSFSRSAVNHE---SGAK 361 (666)
Q Consensus 292 l~~a~~ia~v~~~es~~~~~~~a~~~~~~~d~nr-------EL~a~GlaNi~sglfGg~P~~~s~srSav~~~---sGar 361 (666)
+...+.-+++++..+..+.-.-++.-| .++.| -.++.|+++++=++.--+|+..+.|--....- .++
T Consensus 24 ~~aG~va~lvg~~~~~~iv~~a~~~~g--~s~aq~~swl~a~~~~~Gl~ti~lS~~~r~Pi~~awStPGaAll~~~~~~- 100 (395)
T TIGR00843 24 LIAGFLAVLIGYAGPAAIFFQAAIKAG--ASTAMIIGWITAIGIAAAVSGIFLSIRFKTPVLTAWSAPGAALLVTGFPG- 100 (395)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecCchHHHHHHHhcCC-
Confidence 445566677777777765555444433 34443 34788899998888889999888882222211 221
Q ss_pred cch-----HHHHHHHHHHHHHH--HhHHHHhhhcHHHHHHHHH
Q 005994 362 TGL-----SGVITGIIMACALL--FMTPLFEHIPQCALAAIVV 397 (666)
Q Consensus 362 T~l-----a~iv~g~~~ll~ll--~l~~ll~~IP~avLaaili 397 (666)
-.+ +.+++|+++++..+ .+..+.+.||.++.++++-
T Consensus 101 ~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLA 143 (395)
T TIGR00843 101 ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLA 143 (395)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 223 33555555555443 2667889999999999884
No 42
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=65.80 E-value=78 Score=35.01 Aligned_cols=81 Identities=21% Similarity=0.395 Sum_probs=49.0
Q ss_pred hhHHHHhhhhhhhhh--c--c-CCCCcccccchhhhhhh--cCCccc-----hHHHHHHHHHHHHHHHhHHHHhhhcHHH
Q 005994 324 NQELFGLGVANILGS--F--F-SAYPTTGSFSRSAVNHE--SGAKTG-----LSGVITGIIMACALLFMTPLFEHIPQCA 391 (666)
Q Consensus 324 nrEL~a~GlaNi~sg--l--f-Gg~P~~~s~srSav~~~--sGarT~-----la~iv~g~~~ll~ll~l~~ll~~IP~av 391 (666)
...+++.|++.++=+ + + +.+|..-+.+-..+... .+..-. .+.+++|++.+++......+.+++|..+
T Consensus 35 ~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~~~~~~~~ga~~v~Gii~illg~~~~~l~~~iPp~v 114 (406)
T TIGR03173 35 SADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAGGGLGAIFGAVIVAGLFVILLAPFFSKLVRFFPPVV 114 (406)
T ss_pred HHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHH
Confidence 345677788887774 2 2 35676555444322211 111112 3445566666666656777889999988
Q ss_pred HHHHHHHHHhhcc
Q 005994 392 LAAIVVSAVMGLV 404 (666)
Q Consensus 392 Laaili~~~~~li 404 (666)
.+.++..+|+.+.
T Consensus 115 ~G~~i~~IGl~l~ 127 (406)
T TIGR03173 115 TGTVITLIGLSLM 127 (406)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777777665
No 43
>PRK10720 uracil transporter; Provisional
Probab=64.57 E-value=1.1e+02 Score=34.31 Aligned_cols=84 Identities=19% Similarity=0.207 Sum_probs=50.4
Q ss_pred CChhhHHHHhhhhhhhhhccC--CCCcccccchhhhhhh-cCCccchHH-----HHHHHHHHHHHHHhH-----HHHhhh
Q 005994 321 LDSNQELFGLGVANILGSFFS--AYPTTGSFSRSAVNHE-SGAKTGLSG-----VITGIIMACALLFMT-----PLFEHI 387 (666)
Q Consensus 321 ~d~nrEL~a~GlaNi~sglfG--g~P~~~s~srSav~~~-sGarT~la~-----iv~g~~~ll~ll~l~-----~ll~~I 387 (666)
.|+++.+++-|++.++=.+++ .+|..-+.|=+.+... +.+...+.. +++|++.+++.++.. .+..++
T Consensus 40 l~~~~~l~~sGi~TliQ~~~~g~rlP~~~G~sfa~i~~~~~~~~~~~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~f 119 (428)
T PRK10720 40 INPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLF 119 (428)
T ss_pred CCHHHHHHHHHHHHHHHHHhccCccceEEeCcHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC
Confidence 566778999999999987655 4555443332222100 111123333 334444344333321 356799
Q ss_pred cHHHHHHHHHHHHhhcc
Q 005994 388 PQCALAAIVVSAVMGLV 404 (666)
Q Consensus 388 P~avLaaili~~~~~li 404 (666)
|..+.+.++..+|+.+.
T Consensus 120 Pp~v~G~~i~lIGl~L~ 136 (428)
T PRK10720 120 PPAAMGAIVAVIGLELA 136 (428)
T ss_pred ChHHHHHHHHHHHHHhH
Confidence 99999999999998886
No 44
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=61.42 E-value=2.6e+02 Score=33.84 Aligned_cols=45 Identities=13% Similarity=0.078 Sum_probs=31.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhhhhhhhhhhhcchhhHHHHHHHHHhhh
Q 005994 209 DKFSWPPFLVGSIILAILLIMKQLGKSRKYLRFLRAAGPLTGVVLGTTIVK 259 (666)
Q Consensus 209 ~~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~~~p~~Li~vv~gt~~~~ 259 (666)
...|.+.+++|...+++.++...++.| ++++.+++.+++|.+++-
T Consensus 9 ~~~~l~~~~lG~~lll~~l~s~~lkeR------l~Ls~~~v~Ll~GiilGP 53 (810)
T TIGR00844 9 TKAHVAYSCVGIFSSIFSLVSLFVKEK------LYIGESMVASIFGLIVGP 53 (810)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhh------cCCcHHHHHHHHHHHhhh
Confidence 445666777787777777666666533 356788888888887763
No 45
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=61.41 E-value=45 Score=33.28 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=47.7
Q ss_pred cEEEEEeccceeeccH-------HHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHh
Q 005994 485 GIVIVRIDAPIYFANI-------SFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKS 557 (666)
Q Consensus 485 ~i~Iirl~G~L~F~na-------~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~ 557 (666)
+|.|+.+.|++.-.+. ..+.+.++++..+ ++++.|||+... ...|.+..+.+.+..+.+++
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d-----------~~v~~ivL~~~s-~Gg~~~~~~~~~~~l~~~~~ 68 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLD-----------PKVKAIVLRVNS-PGGSVTASEVIRAELAAARA 68 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhC-----------CCceEEEEEEcC-CCcCHHHHHHHHHHHHHHHh
Confidence 4667777777766554 4566666655321 357899998654 67888888888888888887
Q ss_pred CCcEEEEE
Q 005994 558 RDIQIAIS 565 (666)
Q Consensus 558 ~gi~v~la 565 (666)
.+..++-+
T Consensus 69 ~~kpVia~ 76 (211)
T cd07019 69 AGKPVVVS 76 (211)
T ss_pred CCCCEEEE
Confidence 77766544
No 46
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=61.36 E-value=45 Score=33.09 Aligned_cols=67 Identities=15% Similarity=0.187 Sum_probs=51.4
Q ss_pred EEEEEecccee---eccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEE
Q 005994 486 IVIVRIDAPIY---FANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQI 562 (666)
Q Consensus 486 i~Iirl~G~L~---F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v 562 (666)
+.+++++|.+. -.....+.+.++++..+ ++++.|+|+... ...|....+.+.+..+.+++.+..+
T Consensus 2 v~vi~i~g~i~~~~~~~~~~l~~~l~~a~~d-----------~~i~~ivl~~~s-~Gg~~~~~~~i~~~i~~~~~~~kpv 69 (208)
T cd07023 2 IAVIDIEGTISDGGGIGADSLIEQLRKARED-----------DSVKAVVLRINS-PGGSVVASEEIYREIRRLRKAKKPV 69 (208)
T ss_pred EEEEEEEEEEcCCCCCCHHHHHHHHHHHHhC-----------CCCcEEEEEEEC-CCCCHHHHHHHHHHHHHHHhcCCcE
Confidence 57899999998 67888888888876532 256889998864 5668888888888888888766666
Q ss_pred EE
Q 005994 563 AI 564 (666)
Q Consensus 563 ~l 564 (666)
+-
T Consensus 70 ia 71 (208)
T cd07023 70 VA 71 (208)
T ss_pred EE
Confidence 43
No 47
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=59.38 E-value=1.2e+02 Score=28.80 Aligned_cols=85 Identities=24% Similarity=0.302 Sum_probs=59.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHhhhhhhhhhccCCCCcccccchhhhhhhcCCccc
Q 005994 284 SFECAMSLIPTAILITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANILGSFFSAYPTTGSFSRSAVNHESGAKTG 363 (666)
Q Consensus 284 ~~~~~~~ll~~a~~ia~v~~~es~~~~~~~a~~~~~~~d~nrEL~a~GlaNi~sglfGg~P~~~s~srSav~~~sGarT~ 363 (666)
.+..+.+.++..+...++.+.-+...+..+.+..+.+ . ..++++..|+ |...-+.+..+.|+..+
T Consensus 68 ~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~--~------------~ta~La~~PG-Gl~~m~~~A~~~gad~~ 132 (156)
T TIGR03082 68 VLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVD--P------------LTAFLATSPG-GASEMAALAAELGADVA 132 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--H------------HHHHHHhCCc-hHHHHHHHHHHhCCCHH
Confidence 3455566666666666666666666676666666533 2 3467788888 77777888888999999
Q ss_pred hHHHHHHHHHHHHHHHhHHH
Q 005994 364 LSGVITGIIMACALLFMTPL 383 (666)
Q Consensus 364 la~iv~g~~~ll~ll~l~~l 383 (666)
...+.+-+=++++.+....+
T Consensus 133 ~V~~~q~~Rl~~v~~~~P~i 152 (156)
T TIGR03082 133 FVAAMQTLRLLFVVLLVPLL 152 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999988777776444433
No 48
>COG5439 Uncharacterized conserved protein [Function unknown]
Probab=57.87 E-value=15 Score=31.56 Aligned_cols=42 Identities=12% Similarity=0.305 Sum_probs=36.6
Q ss_pred eEEEEEcCCCCccCHHHHHHHHHHHHHHHhC-CcEEEEEeCCh
Q 005994 528 YFVILEMAPVTYIDSSAVQALKDLYQEYKSR-DIQIAISNLNH 569 (666)
Q Consensus 528 ~~VILDls~V~~IDsSgl~~L~~l~~~~~~~-gi~v~la~~~~ 569 (666)
..+++|+.+..|+.|||+..|..+.-+.+++ ++++++-|-++
T Consensus 47 s~mtinL~gL~FLNSSGInlLakftievRk~pd~~fvvrGs~~ 89 (112)
T COG5439 47 SEMTINLEGLEFLNSSGINLLAKFTIEVRKKPDTSFVVRGSKN 89 (112)
T ss_pred HHhEEecccceeecccchHHHHhhhhhhhcCCCceEEEecCCC
Confidence 5689999999999999999999999888876 78888877554
No 49
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=57.86 E-value=55 Score=32.58 Aligned_cols=65 Identities=12% Similarity=0.183 Sum_probs=47.4
Q ss_pred EEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEE
Q 005994 486 IVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAI 564 (666)
Q Consensus 486 i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~l 564 (666)
|.+++++|.+. .+...+.+.++++..+ ++++.|+|+... ..-|....+.+.+..++++ .|.+++-
T Consensus 2 v~vi~i~g~i~-~s~~~l~~~l~~a~~d-----------~~i~~vvl~~~s-~Gg~~~~~~~l~~~i~~~~-~~kpvia 66 (207)
T TIGR00706 2 IAILPVSGAIA-VSPEDFDKKIKRIKDD-----------KSIKALLLRINS-PGGTVVASEEIYEKLKKLK-AKKPVVA 66 (207)
T ss_pred EEEEEEEEEEe-cCHHHHHHHHHHHhhC-----------CCccEEEEEecC-CCCCHHHHHHHHHHHHHhc-CCCCEEE
Confidence 67899999999 7888888888877532 356899999864 4457777777777777776 3455543
No 50
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=57.30 E-value=56 Score=36.36 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhHHH-----HhhhcHHHHHHHHHHHHhhcc
Q 005994 366 GVITGIIMACALLFMTPL-----FEHIPQCALAAIVVSAVMGLV 404 (666)
Q Consensus 366 ~iv~g~~~ll~ll~l~~l-----l~~IP~avLaaili~~~~~li 404 (666)
.+++|++.+++.+++..+ ..++|..+.+++++.+|+.+.
T Consensus 97 ~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~ 140 (415)
T TIGR00801 97 LIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLI 140 (415)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHH
Confidence 445555555554443333 789999999999998888886
No 51
>PRK10444 UMP phosphatase; Provisional
Probab=55.67 E-value=27 Score=35.92 Aligned_cols=73 Identities=12% Similarity=0.205 Sum_probs=52.1
Q ss_pred eEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCC-----hhHHHHHHhcCCccccCCeeeecCHHHHHHHHHH
Q 005994 528 YFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLN-----HEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCLQ 602 (666)
Q Consensus 528 ~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~-----~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae~ 602 (666)
+.+++|+.++-+-+-....--.+..++++++|++++++.-+ .+..+.|++.|+. +.+++++.+-..+.++..+
T Consensus 2 ~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~--~~~~~i~ts~~~~~~~L~~ 79 (248)
T PRK10444 2 KNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD--VPDSVFYTSAMATADFLRR 79 (248)
T ss_pred cEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC--CCHhhEecHHHHHHHHHHh
Confidence 57899999988777565665667888999999999888543 3567788888873 3456677666655555543
No 52
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=54.28 E-value=3.2e+02 Score=30.64 Aligned_cols=82 Identities=7% Similarity=0.041 Sum_probs=54.5
Q ss_pred hhHHHHhhhhhhhhhccC-CCCcccccchhh----hhhh-----cCCc--c-----chHHHHHHHHHHHHHHH--hHHHH
Q 005994 324 NQELFGLGVANILGSFFS-AYPTTGSFSRSA----VNHE-----SGAK--T-----GLSGVITGIIMACALLF--MTPLF 384 (666)
Q Consensus 324 nrEL~a~GlaNi~sglfG-g~P~~~s~srSa----v~~~-----sGar--T-----~la~iv~g~~~ll~ll~--l~~ll 384 (666)
+..+++.|++.++=+++| .+|.--+.+-.- ..+. .|.. + +.+.+++|++.+++.+. +..+.
T Consensus 48 ~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~~~~~~g~~~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~ 127 (433)
T PRK11412 48 QYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVVTILIGFSGLGHRLA 127 (433)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999888 477653333332 1121 1110 1 11345566666666544 77888
Q ss_pred hhhcHHHHHHHHHHHHhhccC
Q 005994 385 EHIPQCALAAIVVSAVMGLVD 405 (666)
Q Consensus 385 ~~IP~avLaaili~~~~~li~ 405 (666)
.++|.-|.+.+++.+|+.++.
T Consensus 128 r~fpPvV~G~vv~lIGlsL~~ 148 (433)
T PRK11412 128 RLFTPMVMVVFMLLLGAQLTT 148 (433)
T ss_pred HhCCchhhhHhHHHHHHhhHH
Confidence 999999999999999999973
No 53
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=53.76 E-value=20 Score=40.16 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhH-HHHhhhcHHHHHHHHHHHHhhccC
Q 005994 370 GIIMACALLFMT-PLFEHIPQCALAAIVVSAVMGLVD 405 (666)
Q Consensus 370 g~~~ll~ll~l~-~ll~~IP~avLaaili~~~~~li~ 405 (666)
|++..++..++. .+...+|..|.+.+++++|..|+.
T Consensus 116 g~~~~li~~~~~~~l~rlfPPvVtG~Vi~~IGlsL~~ 152 (451)
T COG2233 116 GLVYFLISPIVKIRLARLFPPVVTGPVVLVIGLSLAP 152 (451)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEeEeeeehhhhHH
Confidence 333333333444 566789999999999999998873
No 54
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=52.85 E-value=72 Score=31.88 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEE
Q 005994 500 ISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIA 563 (666)
Q Consensus 500 a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~ 563 (666)
...+.+.++++..+ ++++.|+|++... .-|.+..+.+.+..+++++ +..++
T Consensus 27 ~~~l~~~l~~a~~d-----------~~i~~Vvl~~~s~-gg~~~~~~~l~~~l~~~~~-~KpVi 77 (214)
T cd07022 27 YEGIAAAIRAALAD-----------PDVRAIVLDIDSP-GGEVAGVFELADAIRAARA-GKPIV 77 (214)
T ss_pred HHHHHHHHHHHhhC-----------CCCcEEEEEEeCC-CCcHHHHHHHHHHHHHHhc-CCCEE
Confidence 45667777665421 3578999998664 4577888888888888876 55543
No 55
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=52.22 E-value=57 Score=34.90 Aligned_cols=87 Identities=23% Similarity=0.267 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHhhhhhhhhhccCCCCcccccchhhhhhhcCCccch
Q 005994 285 FECAMSLIPTAILITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANILGSFFSAYPTTGSFSRSAVNHESGAKTGL 364 (666)
Q Consensus 285 ~~~~~~ll~~a~~ia~v~~~es~~~~~~~a~~~~~~~d~nrEL~a~GlaNi~sglfGg~P~~~s~srSav~~~sGarT~l 364 (666)
+..+.+.++..+.+.++...-+...+-.+.+..++ |. ..++|+++|+ |...-.++..+.|+.++.
T Consensus 47 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~--d~------------~TA~~~~~PG-g~s~m~~la~~~gad~~~ 111 (318)
T PF05145_consen 47 LAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGL--DR------------ATAFFASMPG-GLSEMVALAEEYGADTRR 111 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--Ch------------hHHHHHcCCc-cHHHHHHHHHHcCCChhh
Confidence 34444455555555555566566566656555443 32 3589999999 666777888999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhh
Q 005994 365 SGVITGIIMACALLFMTPLFEH 386 (666)
Q Consensus 365 a~iv~g~~~ll~ll~l~~ll~~ 386 (666)
..+.+.+=+++++++...++.+
T Consensus 112 Va~~q~lRl~~Vv~~vP~i~~~ 133 (318)
T PF05145_consen 112 VALVQSLRLLLVVLLVPFIASL 133 (318)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988887777554444433
No 56
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=51.49 E-value=3.4e+02 Score=30.48 Aligned_cols=78 Identities=17% Similarity=0.148 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHHhhccCHHHHHHHHhcCccCeeehhhhhhHHHhhhhHHHHHHHHH
Q 005994 365 SGVITGIIMACALLFMTPLFEHIPQCALAAIVVSAVMGLVDYDEAIFLWHVDKKDFLLWTITSITTLFLGIEIGVLVGVG 444 (666)
Q Consensus 365 a~iv~g~~~ll~ll~l~~ll~~IP~avLaaili~~~~~li~~~~~~~l~~~~~~d~~i~~~t~~~~l~~~l~~Gi~vGi~ 444 (666)
++.+.++++.+.+++.+-+=...|+-.++.|.-.+...+. +-.-...-.. ...++.-.++..+..|+++|++
T Consensus 136 ~saV~av~l~~~i~~~~~lRa~~p~~~~~~I~~~I~~~i~-------~t~g~~~p~~-~~~~l~~~ll~P~~ig~ai~~~ 207 (459)
T PF10337_consen 136 ASAVFAVFLFVFIYFHGWLRAKNPKLNFPVIFGSIFVDIF-------LTYGPLFPTF-FAYTLGKTLLKPFLIGIAIALV 207 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH-------HHhCcCcCcc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777778887544443332222211 0011111111 4456667777788888888888
Q ss_pred HHHHHH
Q 005994 445 ASLAFV 450 (666)
Q Consensus 445 ~sl~~~ 450 (666)
+++++|
T Consensus 208 vslliF 213 (459)
T PF10337_consen 208 VSLLIF 213 (459)
T ss_pred Hheeec
Confidence 887764
No 57
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=50.95 E-value=45 Score=29.29 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=48.8
Q ss_pred EEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHH---HhCCcEEE
Q 005994 487 VIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEY---KSRDIQIA 563 (666)
Q Consensus 487 ~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~---~~~gi~v~ 563 (666)
-++++.|.=+=-|+..|-+-+.+.+...-. +..+.+.+++ .+.|+++|...+|.++.+.+ .++|.+|.
T Consensus 10 g~l~i~GeSypEn~~~Fy~Pi~~wl~~Yl~--------~~~~~i~~~~-~L~YfNTSSsk~l~~i~~~Le~~~~~g~~V~ 80 (99)
T PF09345_consen 10 GRLEISGESYPENAFAFYQPILDWLEAYLA--------EPNKPITFNF-KLSYFNTSSSKALMDIFDLLEDAAQKGGKVT 80 (99)
T ss_pred CEEEEecccCccCHHHHHHHHHHHHHHHHh--------CCCCcEEEEE-EEEEEecHhHHHHHHHHHHHHHHHhcCCcEE
Confidence 367888888888888877777665543221 1124677888 58899999999998888766 56676665
Q ss_pred E
Q 005994 564 I 564 (666)
Q Consensus 564 l 564 (666)
+
T Consensus 81 v 81 (99)
T PF09345_consen 81 V 81 (99)
T ss_pred E
Confidence 4
No 58
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=50.28 E-value=33 Score=35.78 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=52.3
Q ss_pred ceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCC-----hhHHHHHHhcCCccccCCeeeecCHHHHHHHHH
Q 005994 527 IYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLN-----HEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCL 601 (666)
Q Consensus 527 ~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~-----~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae 601 (666)
++.+++|+.++-+-+...+.-..+..++++++|++++++.-+ .+..+.|++.|+... .++++.+..-+.++..
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~--~~~i~ts~~~~~~~l~ 79 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGL--AEQLFSSALCAARLLR 79 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC--hhhEecHHHHHHHHHH
Confidence 367899999988766665555677888889999999877432 245567888998533 4677777666655554
Q ss_pred H
Q 005994 602 Q 602 (666)
Q Consensus 602 ~ 602 (666)
+
T Consensus 80 ~ 80 (279)
T TIGR01452 80 Q 80 (279)
T ss_pred h
Confidence 4
No 59
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=48.86 E-value=2.8e+02 Score=32.41 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=35.3
Q ss_pred ccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEE
Q 005994 525 ERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAIS 565 (666)
Q Consensus 525 ~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la 565 (666)
++++.|+||+.....-+.+..+.+.+..+++++.|.+|+-.
T Consensus 92 ~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~ 132 (584)
T TIGR00705 92 RRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAY 132 (584)
T ss_pred CCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 46899999999888888899999999999999888888643
No 60
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=48.59 E-value=1.4e+02 Score=32.34 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHhhhhhhhhhccCCCCcccccchhhhhhhcCCccch
Q 005994 285 FECAMSLIPTAILITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANILGSFFSAYPTTGSFSRSAVNHESGAKTGL 364 (666)
Q Consensus 285 ~~~~~~ll~~a~~ia~v~~~es~~~~~~~a~~~~~~~d~nrEL~a~GlaNi~sglfGg~P~~~s~srSav~~~sGarT~l 364 (666)
++.+...++..+.+.++...-++..+.-+.+ .+ ..|.| -+++|+.|+ |...-.......|+.++.
T Consensus 80 l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r-~~-~~~~~------------Ta~~gs~PG-gas~m~~iA~d~gAd~~~ 144 (352)
T COG3180 80 LDTLKSNWPIVLVVLLLTLLSSILLGWLLKR-FS-ILPGN------------TAFLGSSPG-GASAMVSIAQDYGADLRL 144 (352)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHHH-hc-CCCcc------------hhhHhcCCc-hHHHHHHHHHHhCCChhH
Confidence 4555666666666666666666655554443 33 44444 478999999 666667777999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 005994 365 SGVITGIIMACALLF 379 (666)
Q Consensus 365 a~iv~g~~~ll~ll~ 379 (666)
.+++..+=++++.+.
T Consensus 145 VAl~Q~lRvl~Vvl~ 159 (352)
T COG3180 145 VALMQYLRVLFVVLL 159 (352)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998877777644
No 61
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=48.22 E-value=1.9e+02 Score=31.82 Aligned_cols=82 Identities=21% Similarity=0.216 Sum_probs=45.2
Q ss_pred hhhHHHHhhhhhhhhhc-cC-CCCcccccchhhhh---hhcC----CccchHH-----HHHHHHHHHHHHHhH--HHHhh
Q 005994 323 SNQELFGLGVANILGSF-FS-AYPTTGSFSRSAVN---HESG----AKTGLSG-----VITGIIMACALLFMT--PLFEH 386 (666)
Q Consensus 323 ~nrEL~a~GlaNi~sgl-fG-g~P~~~s~srSav~---~~sG----arT~la~-----iv~g~~~ll~ll~l~--~ll~~ 386 (666)
....+++-|++.++=++ +| .+|..-+.+-.... ...| ....+.. ++.|++.+++.+... .+..+
T Consensus 39 i~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~~~g~~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~ 118 (389)
T PF00860_consen 39 ISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMIVIGMAESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRL 118 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-----HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhcccccccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHH
Confidence 36678888999999888 54 34554444443333 2223 1333333 333444444433333 67889
Q ss_pred hcHHHHHHHHHHHHhhcc
Q 005994 387 IPQCALAAIVVSAVMGLV 404 (666)
Q Consensus 387 IP~avLaaili~~~~~li 404 (666)
+|..+.+++++.+|+.+.
T Consensus 119 ~pp~v~g~v~~~IGl~L~ 136 (389)
T PF00860_consen 119 FPPVVKGAVVLLIGLSLA 136 (389)
T ss_dssp --HHHHHHHHHHHHHHHH
T ss_pred hChhheEeeEeeehhhhh
Confidence 999999999999888876
No 62
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=47.28 E-value=63 Score=29.87 Aligned_cols=64 Identities=11% Similarity=0.207 Sum_probs=44.5
Q ss_pred CccCHHHHHHHHHHHHHHHhCCc--EEEEEe--CChhHHHHHHhcCCccccCCeeeecCHHHHHHHHHHhh
Q 005994 538 TYIDSSAVQALKDLYQEYKSRDI--QIAISN--LNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCLQHV 604 (666)
Q Consensus 538 ~~IDsSgl~~L~~l~~~~~~~gi--~v~la~--~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae~~l 604 (666)
+.+|.+-.+...++.++++++|. ..+++| ..++-.+.|+..|+.+.++.. .++++-+++..+.+
T Consensus 60 Ssl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~g---t~~~~i~~~l~~~~ 127 (132)
T TIGR00640 60 SSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGPG---TPIPESAIFLLKKL 127 (132)
T ss_pred cCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECCC---CCHHHHHHHHHHHH
Confidence 56677888889999999998854 235555 455667789999997776532 35666666665544
No 63
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=47.11 E-value=34 Score=35.25 Aligned_cols=73 Identities=21% Similarity=0.308 Sum_probs=50.4
Q ss_pred eEEEEEcCCCCccCHH----HHHHHHHHHHHHHhCCcEEEEEeCC-----hhHHHHHHhcCCccccCCeeeecCHHHHHH
Q 005994 528 YFVILEMAPVTYIDSS----AVQALKDLYQEYKSRDIQIAISNLN-----HEVLLTLSKSGVVDLIGKEWYFVRAHDAVQ 598 (666)
Q Consensus 528 ~~VILDls~V~~IDsS----gl~~L~~l~~~~~~~gi~v~la~~~-----~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~ 598 (666)
+.+++|+.++-+-+.. .+..-.+..++++++|++++++.-+ .++.+.|+..|+. +.+++++.+-..+.+
T Consensus 2 k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~--~~~~~i~ts~~~~~~ 79 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD--ISEDEVFTPAPAARQ 79 (257)
T ss_pred CEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC--CCHHHeEcHHHHHHH
Confidence 5789999888665544 3444455677788899999888532 2578888888974 456677777666555
Q ss_pred HHHH
Q 005994 599 VCLQ 602 (666)
Q Consensus 599 ~ae~ 602 (666)
+..+
T Consensus 80 ~l~~ 83 (257)
T TIGR01458 80 LLEE 83 (257)
T ss_pred HHHh
Confidence 5543
No 64
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=46.13 E-value=4.4e+02 Score=29.45 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=50.4
Q ss_pred CChhhHHHHhhhhhhhhhc-c-CCCCcccccch----hhhhhh--cC-Cc------cchHHHHHHHHHHHHHHHh-----
Q 005994 321 LDSNQELFGLGVANILGSF-F-SAYPTTGSFSR----SAVNHE--SG-AK------TGLSGVITGIIMACALLFM----- 380 (666)
Q Consensus 321 ~d~nrEL~a~GlaNi~sgl-f-Gg~P~~~s~sr----Sav~~~--sG-ar------T~la~iv~g~~~ll~ll~l----- 380 (666)
.|.+..+++-|++.++=+. + +.+|..-+.+- ..+... ++ +. ...+.+++|++.+++.++.
T Consensus 56 l~~~~tl~~sGi~TllQ~~~~G~rlP~v~G~sf~f~~~~~~~~~~~~~~~~~~~~~a~ga~iv~G~i~~llg~~~~~~~~ 135 (429)
T TIGR03616 56 FDPNLTILMSGIGTLLFFLITGGRVPSYLGSSAAFVGAVIAATGYNGQGTNPNIALALGGIIACGLVYAAIGLVVMRTGT 135 (429)
T ss_pred CCHhHHHHHHHHHHHHHHHHhCCCceeEEcCcHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 5555789999999999874 3 45665433221 111110 11 11 1134444555544444332
Q ss_pred HHHHhhhcHHHHHHHHHHHHhhccC
Q 005994 381 TPLFEHIPQCALAAIVVSAVMGLVD 405 (666)
Q Consensus 381 ~~ll~~IP~avLaaili~~~~~li~ 405 (666)
..+..++|.-+.+.+++.+|+.++.
T Consensus 136 ~~l~r~fpPvV~G~vv~lIGlsL~~ 160 (429)
T TIGR03616 136 RWIERLMPPVVTGAVVMAIGLNLAP 160 (429)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 3466789999999999988888873
No 65
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=46.11 E-value=3.4e+02 Score=29.83 Aligned_cols=104 Identities=17% Similarity=0.229 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhH-------HHHhhhhhhhhhccCCCCcccccchhhhhhhc--CCcc
Q 005994 292 IPTAILITGVAILESVGIAKALAAKNGYELDSNQE-------LFGLGVANILGSFFSAYPTTGSFSRSAVNHES--GAKT 362 (666)
Q Consensus 292 l~~a~~ia~v~~~es~~~~~~~a~~~~~~~d~nrE-------L~a~GlaNi~sglfGg~P~~~s~srSav~~~s--GarT 362 (666)
+..++.-+++++..+..+.-.-++..| .+..|- .++.|+.++.-|+--=+|.....|--....-. ...-
T Consensus 8 ~~aG~va~lvg~tg~~aiv~qaa~a~g--~s~~q~~SWl~al~~~~Gl~~i~lSl~yR~Pi~~AWStPGaAlL~~~~~~~ 85 (378)
T PF03594_consen 8 VSAGFVAVLVGYTGPVAIVLQAAQAAG--ASPAQIASWLFALYLGMGLTSILLSLRYRMPIVTAWSTPGAALLATSLPGY 85 (378)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcchHHHHHHHHhccCC
Confidence 344566667777777766555554443 344442 26677788888888888998887766555443 2233
Q ss_pred chHHH-----HHHHHHHHHHHH--hHHHHhhhcHHHHHHHHH
Q 005994 363 GLSGV-----ITGIIMACALLF--MTPLFEHIPQCALAAIVV 397 (666)
Q Consensus 363 ~la~i-----v~g~~~ll~ll~--l~~ll~~IP~avLaaili 397 (666)
.+.-. ++|+++++..+. +..++++||.++.++++-
T Consensus 86 ~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLA 127 (378)
T PF03594_consen 86 SFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLA 127 (378)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 44433 344444444432 667899999987666554
No 66
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=45.71 E-value=55 Score=34.65 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=46.5
Q ss_pred cceEEEEEcCCCCccCHHHH----HHHHHHHHHHHhCCcEEEEEe--CChhHHHHHHhcCCcccc
Q 005994 526 RIYFVILEMAPVTYIDSSAV----QALKDLYQEYKSRDIQIAISN--LNHEVLLTLSKSGVVDLI 584 (666)
Q Consensus 526 ~~~~VILDls~V~~IDsSgl----~~L~~l~~~~~~~gi~v~la~--~~~~v~~~L~~~Gl~~~i 584 (666)
..+.|++|+.+.-.=|.--+ ....+..++++++|+.+.++. ..+.+.+.|++.|+.+.+
T Consensus 125 ~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 125 PPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred cceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 45899999987655554332 567789999999999999985 667788999999997654
No 67
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=45.52 E-value=50 Score=31.09 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=42.0
Q ss_pred EEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHH
Q 005994 488 IVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYK 556 (666)
Q Consensus 488 Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~ 556 (666)
|++++|+++-...+.+.+.++++..+ ++++.|+|+.... .-|.++...+.+..++++
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d-----------~~~~~ivl~~~s~-Gg~~~~~~~i~~~l~~~~ 57 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEAD-----------NSVKAIVLEVNTP-GGRVDAGMNIVDALQASR 57 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhC-----------CCCceEEEEEECC-CcCHHHHHHHHHHHHHhC
Confidence 47889999999999999999887532 2467899988643 347777776766666665
No 68
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=44.79 E-value=59 Score=30.23 Aligned_cols=72 Identities=10% Similarity=0.065 Sum_probs=45.6
Q ss_pred ceEEEEEcCCCCccCHHHHHHHHHHHHHHHhC---CcEEEEEeCC-------hhHHHHHHhcCCccccCCeeeecCHHHH
Q 005994 527 IYFVILEMAPVTYIDSSAVQALKDLYQEYKSR---DIQIAISNLN-------HEVLLTLSKSGVVDLIGKEWYFVRAHDA 596 (666)
Q Consensus 527 ~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~---gi~v~la~~~-------~~v~~~L~~~Gl~~~i~~~~~f~s~~~A 596 (666)
.+.|.+.+..- +....+.++.+.++++ ++.+++-|.. .+..+.+++.|+...+++. .+.++.
T Consensus 55 ~d~V~lS~~~~-----~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~---~~~~~i 126 (137)
T PRK02261 55 ADAILVSSLYG-----HGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPG---TDPEEA 126 (137)
T ss_pred CCEEEEcCccc-----cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcC---CCHHHH
Confidence 35666644333 4445556666777666 6777777753 4677899999975443322 168888
Q ss_pred HHHHHHhhhh
Q 005994 597 VQVCLQHVQS 606 (666)
Q Consensus 597 l~~ae~~l~~ 606 (666)
+++..+.+..
T Consensus 127 ~~~l~~~~~~ 136 (137)
T PRK02261 127 IDDLKKDLNQ 136 (137)
T ss_pred HHHHHHHhcc
Confidence 8888776544
No 69
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=44.43 E-value=43 Score=34.31 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=48.6
Q ss_pred eEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEe-----CChhHHHHHHhcCCccccCCeeeecCHHHHHHHHHH
Q 005994 528 YFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISN-----LNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCLQ 602 (666)
Q Consensus 528 ~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~-----~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae~ 602 (666)
+.+++|+.++-+-+..-+.-=.+..++++++|++++++. ....+.+.|++.|+.. ..++++.+-..+.++..+
T Consensus 2 ~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~--~~~~iit~~~~~~~~l~~ 79 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPA--TLETVFTASMATADYMND 79 (249)
T ss_pred CEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCC--ChhhEeeHHHHHHHHHHh
Confidence 467888877665544433333567788889999998884 2346788889888743 355677666655555543
No 70
>PRK10949 protease 4; Provisional
Probab=41.97 E-value=3e+02 Score=32.41 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=34.8
Q ss_pred ccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEE
Q 005994 525 ERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAIS 565 (666)
Q Consensus 525 ~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la 565 (666)
++++.|+||+.....-..+.++.+.+..+++++.|.+++-.
T Consensus 111 ~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~ 151 (618)
T PRK10949 111 RNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV 151 (618)
T ss_pred CCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 46899999999988878888889999999999988887643
No 71
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=41.19 E-value=68 Score=33.50 Aligned_cols=78 Identities=15% Similarity=0.171 Sum_probs=59.5
Q ss_pred cceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCC----hh-HHHHHHhcCCccccCCeeeecCHHHHHHHH
Q 005994 526 RIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLN----HE-VLLTLSKSGVVDLIGKEWYFVRAHDAVQVC 600 (666)
Q Consensus 526 ~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~----~~-v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~a 600 (666)
+.+.+++|+.+|-+-+.+.+.-=.+..+.++++|++++|.--+ ++ +.+.|+..+..+. ..++++.+-+.+.+..
T Consensus 7 ~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~-~~~~i~TS~~at~~~l 85 (269)
T COG0647 7 KYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDV-TPDDIVTSGDATADYL 85 (269)
T ss_pred hcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCC-CHHHeecHHHHHHHHH
Confidence 3468999999999999999999999999999999999887443 33 7777777455443 3567887777776666
Q ss_pred HHhh
Q 005994 601 LQHV 604 (666)
Q Consensus 601 e~~l 604 (666)
.++.
T Consensus 86 ~~~~ 89 (269)
T COG0647 86 AKQK 89 (269)
T ss_pred HhhC
Confidence 6543
No 72
>PLN02645 phosphoglycolate phosphatase
Probab=38.93 E-value=97 Score=32.89 Aligned_cols=66 Identities=11% Similarity=0.157 Sum_probs=47.3
Q ss_pred ceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCC-----hhHHHHHHhcCCccccCCeeeecCHH
Q 005994 527 IYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLN-----HEVLLTLSKSGVVDLIGKEWYFVRAH 594 (666)
Q Consensus 527 ~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~-----~~v~~~L~~~Gl~~~i~~~~~f~s~~ 594 (666)
.+.+++|+.++-+-+..-+.--.+..++++++|++++++.-+ .++.+.|++.|+. ...++++.+..
T Consensus 28 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~--~~~~~I~ts~~ 98 (311)
T PLN02645 28 VETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN--VTEEEIFSSSF 98 (311)
T ss_pred CCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC--CChhhEeehHH
Confidence 478999999988776655555577888899999999888542 3456777888874 23455665544
No 73
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=36.84 E-value=1.1e+02 Score=29.93 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=40.9
Q ss_pred EEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEE
Q 005994 486 IVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQI 562 (666)
Q Consensus 486 i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v 562 (666)
+.+++++|.+..+....+++.++++.++ +.+.|++++..-...- ...+. +.+.+++..+++
T Consensus 1 v~vi~i~g~I~~~~~~~l~~~l~~a~~~------------~~~~ivl~inspGG~v-~~~~~---I~~~l~~~~~pv 61 (178)
T cd07021 1 VYVIPIEGEIDPGLAAFVERALKEAKEE------------GADAVVLDIDTPGGRV-DSALE---IVDLILNSPIPT 61 (178)
T ss_pred CEEEEEeeEECHHHHHHHHHHHHHHHhC------------CCCeEEEEEECcCCCH-HHHHH---HHHHHHhCCCCE
Confidence 4688999999999999999999887642 2468999996555443 33333 344444444444
No 74
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=36.56 E-value=1.2e+02 Score=34.56 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=56.3
Q ss_pred cceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCChhHHHHHHhcCCccccCCeeeecCHHHHHHHHH
Q 005994 526 RIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCL 601 (666)
Q Consensus 526 ~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae 601 (666)
+.+.||||=- -..+|+.|-++|.+...+.|++|+.+++..-+|.+.....+.=+.+. |.-+.|...+|-+....
T Consensus 490 ~P~lvVLDEP-NsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~-G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 490 DPFLVVLDEP-NSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQD-GRIAAFGPREEVLAKVL 563 (580)
T ss_pred CCcEEEecCC-CCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecC-ChHHhcCCHHHHHHHhc
Confidence 4578999964 57899999999999999999999999999989888766554333221 34456777777776543
No 75
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=36.26 E-value=1e+02 Score=31.31 Aligned_cols=71 Identities=14% Similarity=0.071 Sum_probs=48.8
Q ss_pred cceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCCh-h---HHHHHHhcCCcc-ccCCeeeecCHHHHHH
Q 005994 526 RIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLNH-E---VLLTLSKSGVVD-LIGKEWYFVRAHDAVQ 598 (666)
Q Consensus 526 ~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~~-~---v~~~L~~~Gl~~-~i~~~~~f~s~~~Al~ 598 (666)
+.+.+++|+.++-.-......--.++.++++++|+++.++.-++ + ..+.|++.|+.. .+ +.++.+-+.+.+
T Consensus 7 ~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~--~~Ii~s~~~~~~ 82 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLP--EMIISSGEIAVQ 82 (242)
T ss_pred cCCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCcccc--ceEEccHHHHHH
Confidence 45789999988877665556677788899999999998863233 2 236789899864 33 345555544333
No 76
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=34.20 E-value=84 Score=33.20 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=60.9
Q ss_pred cceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCC-----hhHHHHHHhcCCccccCCeeeecCHHHHHHHH
Q 005994 526 RIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLN-----HEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVC 600 (666)
Q Consensus 526 ~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~-----~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~a 600 (666)
...++|+||.+|--.-...+.--.+..+.+++.|.+++|+--| ++-.+.+++.|+.. ++++.+|.+...+..+.
T Consensus 21 ~~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~-v~e~~i~ssa~~~a~yl 99 (306)
T KOG2882|consen 21 SFDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS-VKEENIFSSAYAIADYL 99 (306)
T ss_pred hcCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc-cCcccccChHHHHHHHH
Confidence 3468999999998888888888888999999999999888543 34556677888865 67788998877777666
Q ss_pred HHhh
Q 005994 601 LQHV 604 (666)
Q Consensus 601 e~~l 604 (666)
.+..
T Consensus 100 k~~~ 103 (306)
T KOG2882|consen 100 KKRK 103 (306)
T ss_pred HHhC
Confidence 5444
No 77
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=33.12 E-value=60 Score=29.68 Aligned_cols=27 Identities=19% Similarity=0.471 Sum_probs=14.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhcC
Q 005994 429 TTLFLGIEIGVLVGVGASLAFVIHESAN 456 (666)
Q Consensus 429 ~~l~~~l~~Gi~vGi~~sl~~~l~~~~~ 456 (666)
+.+.+|+..|+ +|+++-+.++++|..+
T Consensus 67 ~~Ii~gv~aGv-Ig~Illi~y~irR~~K 93 (122)
T PF01102_consen 67 IGIIFGVMAGV-IGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHS-
T ss_pred eehhHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 33445555665 4555555566665543
No 78
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=32.89 E-value=3.7e+02 Score=30.17 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHhhhhhhhhhccCCC---CcccccchhhhhhhcCCccchHH
Q 005994 290 SLIPTAILITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANILGSFFSAY---PTTGSFSRSAVNHESGAKTGLSG 366 (666)
Q Consensus 290 ~ll~~a~~ia~v~~~es~~~~~~~a~~~~~~~d~nrEL~a~GlaNi~sglfGg~---P~~~s~srSav~~~sGarT~la~ 366 (666)
+.+..|+.-++.++--..++.-..+.-.+++-|-.+.-...++.|..-++.-|+ |...++.-. .+.|.
T Consensus 214 ~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~---~~~Gp------ 284 (439)
T COG0733 214 KVWLAALGQAFFSLSLGFGIMITYSSYLSKKSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGAD---ASQGP------ 284 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCCCC------
Confidence 555666665555555555555556666677788888888999999998887775 443333333 22331
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHH
Q 005994 367 VITGIIMACALLFMTPLFEHIPQCALAAIVVSA 399 (666)
Q Consensus 367 iv~g~~~ll~ll~l~~ll~~IP~avLaaili~~ 399 (666)
-++...++.+++.+|...+-+++.+.
T Consensus 285 -------gL~Fi~LP~if~~mp~G~~~~~lFFl 310 (439)
T COG0733 285 -------GLVFIVLPAVFNQMPLGTLFGILFFL 310 (439)
T ss_pred -------eeehhHHHHHHHhCchhHHHHHHHHH
Confidence 01111366677777766666655543
No 79
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=32.41 E-value=1.5e+02 Score=29.86 Aligned_cols=54 Identities=13% Similarity=0.280 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEE
Q 005994 499 NISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAI 564 (666)
Q Consensus 499 na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~l 564 (666)
+...+.+.++++..+ ++++.|||+..+-.+ ..+..+.+.+..+++++.+..++-
T Consensus 30 ~~~~l~~~l~~a~~d-----------~~ik~vvL~~~s~gg-~~~~~~el~~~i~~~~~~~kpVia 83 (222)
T cd07018 30 SLRDLLEALEKAAED-----------DRIKGIVLDLDGLSG-GLAKLEELRQALERFRASGKPVIA 83 (222)
T ss_pred cHHHHHHHHHHHhcC-----------CCeEEEEEECCCCCC-CHHHHHHHHHHHHHHHHhCCeEEE
Confidence 445666666665321 367999999988777 889999999999999887777753
No 80
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=32.32 E-value=1.6e+02 Score=26.79 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHHHhC--CcEEEEEeCChhHHHHHHhcCCccccCCeeeecCHHHHHHHHHHh
Q 005994 541 DSSAVQALKDLYQEYKSR--DIQIAISNLNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCLQH 603 (666)
Q Consensus 541 DsSgl~~L~~l~~~~~~~--gi~v~la~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae~~ 603 (666)
|..+.+.+..+.+.++++ +..|..|-.+..+++.|++.|+ -+++++||++.+.++
T Consensus 12 ~~~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~--------~~p~~~eaL~~l~~~ 68 (127)
T cd03412 12 YPTAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGI--------EVDTPEEALAKLAAD 68 (127)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCC--------CCCCHHHHHHHHHHC
Confidence 337788899999998765 5688889899999999987763 468899999987654
No 81
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=31.72 E-value=1.4e+02 Score=26.85 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=42.4
Q ss_pred eEEEEEcCCCCccCHHHHHHHHHHHHHHHhC---CcEEEEEe-CChhHHHHHHhcCCccccCCeeeecCHHHHHHHH
Q 005994 528 YFVILEMAPVTYIDSSAVQALKDLYQEYKSR---DIQIAISN-LNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVC 600 (666)
Q Consensus 528 ~~VILDls~V~~IDsSgl~~L~~l~~~~~~~---gi~v~la~-~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~a 600 (666)
+.|.+-++ |.+..+.+.++.+.++++ ++.+.+.| ..++..+.++..|+.+.++. =.+.++.+...
T Consensus 52 d~V~iS~~-----~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~---~~~~~~~~~~~ 120 (122)
T cd02071 52 DVIGLSSL-----SGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFGP---GTSIEEIIDKI 120 (122)
T ss_pred CEEEEccc-----chhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEECC---CCCHHHHHHHH
Confidence 56766443 567777788888888888 44555554 44556788889998766542 23456665544
No 82
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=31.06 E-value=8.3e+02 Score=28.03 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=12.8
Q ss_pred cchhhHHHHHHHHHhhh
Q 005994 243 RAAGPLTGVVLGTTIVK 259 (666)
Q Consensus 243 ~~p~~Li~vv~gt~~~~ 259 (666)
++|.++.-+++|.+++.
T Consensus 21 ~lP~~v~lil~Gi~lg~ 37 (525)
T TIGR00831 21 RLPYPIALILAGLLLGL 37 (525)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 56778877888887774
No 83
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=31.03 E-value=1.2e+02 Score=30.34 Aligned_cols=71 Identities=11% Similarity=0.174 Sum_probs=40.7
Q ss_pred eEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEE-EeCC-h-hHHHHHHhcCCccccCCeeeecCHHHHHHHH
Q 005994 528 YFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAI-SNLN-H-EVLLTLSKSGVVDLIGKEWYFVRAHDAVQVC 600 (666)
Q Consensus 528 ~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~l-a~~~-~-~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~a 600 (666)
..+++|+..+..=|.+|++.+.++.+.+. +.++++ ++.. + .+.+.+.+.|....+.+..-...+-+|++.+
T Consensus 39 d~vl~dl~d~~mp~~~Gl~~~~~l~~~~p--~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v 112 (207)
T PRK11475 39 SAVIFSLSAMRSERREGLSCLTELAIKFP--RMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLS 112 (207)
T ss_pred CEEEeeccccCCCCCCHHHHHHHHHHHCC--CCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 47887887766666679998888876543 455544 4433 2 2445565677766654433233334444443
No 84
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=30.72 E-value=2.5e+02 Score=32.84 Aligned_cols=71 Identities=20% Similarity=0.173 Sum_probs=51.7
Q ss_pred cCcEEEEEeccceeec-------cHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHH
Q 005994 483 YHGIVIVRIDAPIYFA-------NISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEY 555 (666)
Q Consensus 483 ~~~i~Iirl~G~L~F~-------na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~ 555 (666)
.+++.++.++|++.-+ ..+.+.+.++++..+ ++++.|||...+-. =+..+.+.+.+..+++
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D-----------~~VkaIVLrinSpG-Gs~~ase~i~~~i~~~ 374 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSD-----------PDIKAVVLRINSPG-GSVFASEIIRRELARA 374 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhC-----------CCceEEEEEecCCC-CCHHHHHHHHHHHHHH
Confidence 4689999999999743 245666666655321 35789999986544 4777888888888888
Q ss_pred HhCCcEEEEE
Q 005994 556 KSRDIQIAIS 565 (666)
Q Consensus 556 ~~~gi~v~la 565 (666)
++.|..++..
T Consensus 375 ~~~gKPVva~ 384 (584)
T TIGR00705 375 QARGKPVIVS 384 (584)
T ss_pred HhCCCcEEEE
Confidence 8888777543
No 85
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=30.27 E-value=58 Score=32.18 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=45.3
Q ss_pred hhhcHHHHHHHHHHHHhhcc-CHHHHHHHHhcCccCeeehhhhhhHHHhhhhHHHHHHH
Q 005994 385 EHIPQCALAAIVVSAVMGLV-DYDEAIFLWHVDKKDFLLWTITSITTLFLGIEIGVLVG 442 (666)
Q Consensus 385 ~~IP~avLaaili~~~~~li-~~~~~~~l~~~~~~d~~i~~~t~~~~l~~~l~~Gi~vG 442 (666)
..+...+|-..+..+|+++- +...++++++.+++-..+-+.+.+.++..+...+.+.|
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll~ 81 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLLG 81 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778889999999999986 55678889999998888777777777766666655554
No 86
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=28.86 E-value=1.3e+02 Score=31.82 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=42.7
Q ss_pred cceEEEEEcCCCCccCHHHH----HHHHHHHHHHHhCCcEEEEE--eCChhHHHHHHhcCCcccc
Q 005994 526 RIYFVILEMAPVTYIDSSAV----QALKDLYQEYKSRDIQIAIS--NLNHEVLLTLSKSGVVDLI 584 (666)
Q Consensus 526 ~~~~VILDls~V~~IDsSgl----~~L~~l~~~~~~~gi~v~la--~~~~~v~~~L~~~Gl~~~i 584 (666)
..+.+++|+.+.-.=|-.-+ ....+..++++++|+.+.++ +..+.+.+.|+..|+.+.+
T Consensus 127 ~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yF 191 (303)
T PHA03398 127 IPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYF 191 (303)
T ss_pred eccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccc
Confidence 35789999976443332222 34556888889999999988 4567899999999997544
No 87
>PRK10949 protease 4; Provisional
Probab=28.70 E-value=2.8e+02 Score=32.70 Aligned_cols=70 Identities=9% Similarity=0.140 Sum_probs=54.6
Q ss_pred cCcEEEEEeccceeec-------cHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHH
Q 005994 483 YHGIVIVRIDAPIYFA-------NISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEY 555 (666)
Q Consensus 483 ~~~i~Iirl~G~L~F~-------na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~ 555 (666)
.+.|.|+.++|.+.-+ +.+.+.+.|+++..+ ++++.|||+..+ ..-..++.+.+.+.++++
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D-----------~~vkaVvLrInS-pGGs~~ase~i~~~i~~~ 392 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLD-----------PKVKAIVLRVNS-PGGSVTASEVIRAELAAA 392 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhC-----------CCCcEEEEEecC-CCCcHHHHHHHHHHHHHH
Confidence 4679999999999754 345677777776432 367899999974 456889999999999999
Q ss_pred HhCCcEEEE
Q 005994 556 KSRDIQIAI 564 (666)
Q Consensus 556 ~~~gi~v~l 564 (666)
++.|..|+.
T Consensus 393 r~~gKPVva 401 (618)
T PRK10949 393 RAAGKPVVV 401 (618)
T ss_pred HhcCCcEEE
Confidence 988888875
No 88
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=28.67 E-value=2.6e+02 Score=26.80 Aligned_cols=54 Identities=7% Similarity=0.123 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEE
Q 005994 499 NISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAI 564 (666)
Q Consensus 499 na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~l 564 (666)
+.+.+.+.++++..+ ++++.|||+.... .-|....+.+.+..+++++.++.++-
T Consensus 23 ~~~~l~~~l~~a~~d-----------~~v~~vvl~~~~~-gg~~~~~~~~~~~i~~~~~~~kpVia 76 (177)
T cd07014 23 SGDTTAAQIRDARLD-----------PKVKAIVLRVNSP-GGSVTASEVIRAELAAARAAGKPVVA 76 (177)
T ss_pred CHHHHHHHHHHHhcC-----------CCceEEEEEeeCC-CcCHHHHHHHHHHHHHHHhCCCCEEE
Confidence 456777777766432 3578999998644 45888778888888888876665543
No 89
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=28.22 E-value=1.9e+02 Score=34.17 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=18.0
Q ss_pred ccchhHHHHHHHhHHHHHHHhhhhH
Q 005994 161 SIYHAVISGFTTASAIVIALSQAKY 185 (666)
Q Consensus 161 ~ip~~Vi~Gf~~gigl~I~~~ql~~ 185 (666)
+||+++=-=|-..||++....|+-+
T Consensus 137 mISRsLGpEfGGSIGllFf~anV~~ 161 (945)
T KOG1288|consen 137 MISRSLGPEFGGSIGLLFFVANVFN 161 (945)
T ss_pred EEEcccCcccCCeeeehhhHHHHhc
Confidence 4777777777777888877777643
No 90
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=27.73 E-value=1.5e+02 Score=27.02 Aligned_cols=48 Identities=10% Similarity=0.243 Sum_probs=38.0
Q ss_pred HHHHHHhCCcEEEEEe-CChhHHHHHHhcCCccccCCeeeecCHHHHHHHHH
Q 005994 551 LYQEYKSRDIQIAISN-LNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCL 601 (666)
Q Consensus 551 l~~~~~~~gi~v~la~-~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae 601 (666)
+.+.++++|+.+++|. +.+.-...|+..|+.-...+. .+++||++...
T Consensus 57 ~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~---~~V~e~i~~~~ 105 (121)
T COG1433 57 IAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG---GTVEEAIKAFL 105 (121)
T ss_pred HHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC---CCHHHHHHHHh
Confidence 5677888999999984 778899999999986554433 78999998664
No 91
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=27.60 E-value=2.4e+02 Score=30.12 Aligned_cols=66 Identities=12% Similarity=0.194 Sum_probs=50.0
Q ss_pred cEEEEEeccceeecc-------HHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHh
Q 005994 485 GIVIVRIDAPIYFAN-------ISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKS 557 (666)
Q Consensus 485 ~i~Iirl~G~L~F~n-------a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~ 557 (666)
.+.+++++|.+.++. .+...+.++++..+ ++.+.|+|+.. .+.=...+.+.+.+.++++++
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~vk~vvL~in-SPGG~v~as~~i~~~l~~l~~ 127 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARAD-----------PSVKAVVLRIN-SPGGSVVASELIARALKRLRA 127 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcC-----------CCCceEEEEEE-CcCCchhHHHHHHHHHHHHhh
Confidence 689999999999765 66777777766432 24578999986 456667888888888888888
Q ss_pred CCcEEE
Q 005994 558 RDIQIA 563 (666)
Q Consensus 558 ~gi~v~ 563 (666)
++ +|+
T Consensus 128 ~~-PV~ 132 (317)
T COG0616 128 KK-PVV 132 (317)
T ss_pred cC-CEE
Confidence 87 554
No 92
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=27.15 E-value=1.3e+02 Score=31.24 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=36.5
Q ss_pred ceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCCh
Q 005994 527 IYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLNH 569 (666)
Q Consensus 527 ~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~~ 569 (666)
.+.++|| +..+.+|..+...+.++.++++++|+.+.++.=+-
T Consensus 158 p~lllLD-EP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL 199 (254)
T COG1121 158 PDLLLLD-EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL 199 (254)
T ss_pred CCEEEec-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3678888 47999999999999999999999999998886543
No 93
>COG3817 Predicted membrane protein [Function unknown]
Probab=27.08 E-value=7.3e+02 Score=25.78 Aligned_cols=103 Identities=21% Similarity=0.271 Sum_probs=55.3
Q ss_pred hhhHHHHHHHhhhcccccc----cccccCChhh--HHHHHhhcceeEEecccchhHHHHHHHhHHHHHHHhhhhHHhCcc
Q 005994 117 LMAGTTVGIMLVPQLLSWQ----PNKFSTCSTF--STLSFCHGVWWIKYYSIYHAVISGFTTASAIVIALSQAKYFLGYD 190 (666)
Q Consensus 117 ~~AGitv~~~~iPq~maya----Pi~fGsS~~~--~~la~l~GG~l~~~~~ip~~Vi~Gf~~gigl~I~~~ql~~~~G~~ 190 (666)
.++|+.....++ ++|. |.+||++-=| ..++|+.|+ + +|+-+++=...-.+++=..+|++. |
T Consensus 10 ~l~Gi~f~~~a~---~sf~dktnp~r~~t~~FW~l~~~tFl~g~----~--lp~~viG~ivillAliagf~~v~~--G-- 76 (313)
T COG3817 10 ILIGIQFLHTAV---LSFKDKTNPVRFGTGLFWGLFSLTFLGGD----R--LPNIVIGLIVILLALIAGFGQVKI--G-- 76 (313)
T ss_pred HHHHHHHHHHHH---hhccccCCCceecchHHHHHHHHHHhccc----c--ccchhHhHHHHHHHHHHhcCCccc--C--
Confidence 456665444322 6777 9999987544 778888885 5 555554433333333333334331 1
Q ss_pred cCCCCccHHHH-HHHHhhcCC-CCchhHHHHHHHHHHHHHHHHhhh
Q 005994 191 VARSSKIVPLI-KSIILGADK-FSWPPFLVGSIILAILLIMKQLGK 234 (666)
Q Consensus 191 ~~~~~~~~~~~-~~~~~~~~~-~~~~~~~lg~~~l~~l~~~~~~~~ 234 (666)
...+.-+.- +..-+.+++ .-.+.+.+-+++++.-++++.+++
T Consensus 77 --~~~~~~~e~re~~A~rlgnrlfiPal~ip~~tlig~~lf~~~s~ 120 (313)
T COG3817 77 --ALPELSPEEREKSANRLGNRLFIPALLIPVLTLIGSLLFPDLSF 120 (313)
T ss_pred --CCCCCCHHHHHHHHHHhcCEeehHHHHHHHHHHHHHHHhccccc
Confidence 111111111 111223333 234677888888888888877654
No 94
>PRK11778 putative inner membrane peptidase; Provisional
Probab=26.78 E-value=2.7e+02 Score=29.98 Aligned_cols=72 Identities=10% Similarity=0.155 Sum_probs=47.6
Q ss_pred cCcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEE
Q 005994 483 YHGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQI 562 (666)
Q Consensus 483 ~~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v 562 (666)
.+.+.|++++|++.-.....+++.+........ + + +.|+|+..+-... ..+.+......+++++.|+++
T Consensus 89 ~~~v~VI~~~G~I~~~~~~~l~e~i~a~l~~A~------~---~-~aVvLridSpGG~-v~~s~~a~~~l~~lr~~~kpV 157 (330)
T PRK11778 89 KPRLFVLDFKGDIDASEVESLREEITAILAVAK------P---G-DEVLLRLESPGGV-VHGYGLAASQLQRLRDAGIPL 157 (330)
T ss_pred CCeEEEEEEEEEECCCcchhhHHHHHHHHHhcc------C---C-CeEEEEEeCCCCc-hhHHHHHHHHHHHHHhcCCCE
Confidence 367999999999998888888888877653211 1 1 4799998654432 222233333456677788777
Q ss_pred EEE
Q 005994 563 AIS 565 (666)
Q Consensus 563 ~la 565 (666)
+.+
T Consensus 158 va~ 160 (330)
T PRK11778 158 TVA 160 (330)
T ss_pred EEE
Confidence 653
No 95
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=26.65 E-value=3.2e+02 Score=28.77 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=35.5
Q ss_pred HHHHhh-hcHHHHHHHHHHHHhhccCHHHHHHHHhcCc--cCeeehhhhhhHHHhhhhHHHHHHHHHHHHHHHH
Q 005994 381 TPLFEH-IPQCALAAIVVSAVMGLVDYDEAIFLWHVDK--KDFLLWTITSITTLFLGIEIGVLVGVGASLAFVI 451 (666)
Q Consensus 381 ~~ll~~-IP~avLaaili~~~~~li~~~~~~~l~~~~~--~d~~i~~~t~~~~l~~~l~~Gi~vGi~~sl~~~l 451 (666)
...+.. .|.+++.|++....+..+|..-+...++.+. .++ .....-+..++++|+++|-.+.+
T Consensus 38 ~~~~~~~~~~ai~~glvwgl~I~~lDR~ivss~~~~~~~~~~~--------~~~~~R~~lAvliaivIs~pl~l 103 (301)
T PF14362_consen 38 YTVFGGPVWAAIPFGLVWGLVIFNLDRFIVSSIRKSDGSRKRL--------LQALPRLLLAVLIAIVISEPLEL 103 (301)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443 3677777766666666667666666666544 122 12333556666777777754443
No 96
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=26.52 E-value=1.4e+02 Score=24.98 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=35.4
Q ss_pred HHHHHHhCCcEEEEEe-CChhHHHHHHhcCCccccCCeeeecCHHHHHHHHH
Q 005994 551 LYQEYKSRDIQIAISN-LNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCL 601 (666)
Q Consensus 551 l~~~~~~~gi~v~la~-~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae 601 (666)
+.+.+.++|+++++|+ +.+...+.|+..|+.-... .-.+++||++...
T Consensus 45 ~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~---~~~~i~~~l~~~~ 93 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQG---AGGDIEEALEAYL 93 (94)
T ss_dssp HHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEES---TSSBHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEc---CCCCHHHHHHHHh
Confidence 5556666999999995 7788999999999853322 3356888887653
No 97
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=26.47 E-value=1.7e+02 Score=30.50 Aligned_cols=64 Identities=27% Similarity=0.244 Sum_probs=43.7
Q ss_pred CChhhHHHHhhhhhhhhhccCCCCcccccchhhhhhhcCCccchHHHHHHHHHHHHHHHhHHHHh
Q 005994 321 LDSNQELFGLGVANILGSFFSAYPTTGSFSRSAVNHESGAKTGLSGVITGIIMACALLFMTPLFE 385 (666)
Q Consensus 321 ~d~nrEL~a~GlaNi~sglfGg~P~~~s~srSav~~~sGarT~la~iv~g~~~ll~ll~l~~ll~ 385 (666)
+-..-||..+|..|+-+ -.--=|.+++...|+..+.+|-.++-+..-.++-+..+..++.-+..
T Consensus 51 iGatLEL~~LG~~~iGg-avpPD~~~~si~~t~~aI~sg~~~~~~a~~lAiPiA~a~q~l~~~~r 114 (265)
T COG3715 51 IGATLELAALGWANIGG-AVPPDVALASIIGTAFAITSGQGIPEAALALAIPIAVAGQFLTTFVR 114 (265)
T ss_pred HhHHHHHHHHhCcCccc-CCCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999876 33334667888889999988887666665555555555555554444
No 98
>PRK03655 putative ion channel protein; Provisional
Probab=26.17 E-value=4.4e+02 Score=29.29 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=46.6
Q ss_pred HHHhhhhhhhhhccCCCCcccccchhhhhhhcCC-ccchHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHHhhcc
Q 005994 327 LFGLGVANILGSFFSAYPTTGSFSRSAVNHESGA-KTGLSGVITGIIMACALLFMTPLFEHIPQCALAAIVVSAVMGLV 404 (666)
Q Consensus 327 L~a~GlaNi~sglfGg~P~~~s~srSav~~~sGa-rT~la~iv~g~~~ll~ll~l~~ll~~IP~avLaaili~~~~~li 404 (666)
.++-++++.++.++++.|..-...=..+..-+|+ |++|.+-+++.++..=.- ++..+-.+.+++-++++|.-++
T Consensus 330 ~iGA~~G~~~~~l~p~~~~~~~v~~~m~a~la~vtr~p~~sp~ta~viv~em~----~~~l~~~~~~~~~~~~~~~~~~ 404 (414)
T PRK03655 330 FVGVALGLMLHAHVPAVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT----LLPLLCIVMLPAWLLLAGKPMM 404 (414)
T ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcch----HHHHHHHHHHHHHHHHcCChhh
Confidence 4566778888888876654333333344444444 556776666666554321 6666777888888888776655
No 99
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=26.08 E-value=1.8e+02 Score=23.05 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=16.0
Q ss_pred cchhhHHHHHHHHHhhhhcC
Q 005994 243 RAAGPLTGVVLGTTIVKIYH 262 (666)
Q Consensus 243 ~~p~~Li~vv~gt~~~~~~~ 262 (666)
|+++.-+++++|-+++++-+
T Consensus 38 rihGSAIAI~lGLvLAy~GG 57 (60)
T PF03818_consen 38 RIHGSAIAIVLGLVLAYIGG 57 (60)
T ss_pred CcchHHHHHHHHHHHHHHcc
Confidence 57888899999988887643
No 100
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.99 E-value=1.8e+02 Score=31.13 Aligned_cols=68 Identities=19% Similarity=0.167 Sum_probs=51.7
Q ss_pred EEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCCh-hHHHHHHhcCCc-cccCCeeeecCHH-HHHHHHHHh
Q 005994 530 VILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLNH-EVLLTLSKSGVV-DLIGKEWYFVRAH-DAVQVCLQH 603 (666)
Q Consensus 530 VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~~-~v~~~L~~~Gl~-~~i~~~~~f~s~~-~Al~~ae~~ 603 (666)
|.+|..+-.+ ++.++.+..+++++|.+++++.... .+.+.|+..|+. +.+++ +-+.+++ .++++++++
T Consensus 3 VwiDI~n~~h-----vhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk-~g~~tl~~Kl~~~~eR~ 73 (346)
T COG1817 3 VWIDIGNPPH-----VHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGK-HGGVTLKEKLLESAERV 73 (346)
T ss_pred EEEEcCCcch-----hhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecc-cCCccHHHHHHHHHHHH
Confidence 4566554433 4679999999999999999998764 689999999996 44553 4557777 788888754
No 101
>PRK02509 hypothetical protein; Provisional
Probab=23.65 E-value=1.5e+03 Score=28.22 Aligned_cols=13 Identities=8% Similarity=0.263 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHhh
Q 005994 246 GPLTGVVLGTTIV 258 (666)
Q Consensus 246 ~~Li~vv~gt~~~ 258 (666)
+.++++++|..++
T Consensus 192 ~~~~sl~~g~~~~ 204 (973)
T PRK02509 192 AIILSLAFGLILS 204 (973)
T ss_pred HHHHHHHHHHHHH
Confidence 4456666665544
No 102
>COG4129 Predicted membrane protein [Function unknown]
Probab=23.56 E-value=1.2e+02 Score=32.70 Aligned_cols=52 Identities=23% Similarity=0.238 Sum_probs=32.6
Q ss_pred hcCCccchHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHHhhccCHHHHHHHHh
Q 005994 357 ESGAKTGLSGVITGIIMACALLFMTPLFEHIPQCALAAIVVSAVMGLVDYDEAIFLWH 414 (666)
Q Consensus 357 ~sGarT~la~iv~g~~~ll~ll~l~~ll~~IP~avLaaili~~~~~li~~~~~~~l~~ 414 (666)
+.|.||=-+|+.+++.++++-++ -.|.++.|||.-+....--....++.-|+
T Consensus 8 ~ig~RtlKt~ia~~La~~ia~~l------~~~~~~~A~i~AV~~l~~t~~~s~~~~~~ 59 (332)
T COG4129 8 KIGARTLKTGLAAGLALLIAHLL------GLPQPAFAGISAVLCLSPTIKRSLKRALQ 59 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------CCCchHHHHHHHhhcccCcchHHHHHHHH
Confidence 36777777777777776666533 35667777777665555444555555544
No 103
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=23.38 E-value=7.1e+02 Score=27.18 Aligned_cols=108 Identities=17% Similarity=0.230 Sum_probs=74.8
Q ss_pred cccCcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCc
Q 005994 481 YTYHGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDI 560 (666)
Q Consensus 481 ~~~~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi 560 (666)
+..+++.++|+.-.+--.+=.++.+.|.+...... ..-+++..+.+-.-||..+.++. +.+++.|+
T Consensus 185 ~~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~----------~~v~~~tH~NHp~Eit~e~~~A~----~~L~~aGv 250 (369)
T COG1509 185 RAIPHVKIIRIGTRLPVVLPQRITDELCEILGKSR----------KPVWLVTHFNHPNEITPEAREAC----AKLRDAGV 250 (369)
T ss_pred hcCCceeEEEeecccceechhhccHHHHHHHhccC----------ceEEEEcccCChhhcCHHHHHHH----HHHHHcCc
Confidence 45678899999887777777778888877765321 22578899999999999888855 55556666
Q ss_pred EE-----EEEeCChh--HH----HHHHhcCCcc--------ccCCeeeecCHHHHHHHHHH
Q 005994 561 QI-----AISNLNHE--VL----LTLSKSGVVD--------LIGKEWYFVRAHDAVQVCLQ 602 (666)
Q Consensus 561 ~v-----~la~~~~~--v~----~~L~~~Gl~~--------~i~~~~~f~s~~~Al~~ae~ 602 (666)
.+ .+.|+|++ +. +.|...|+.. ..|..|+-.+++++.+-.+.
T Consensus 251 ~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr~~i~~~~~i~~~ 311 (369)
T COG1509 251 PLLNQSVLLRGVNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFRVPIAEGLQIVEE 311 (369)
T ss_pred eeecchheecccCCCHHHHHHHHHHHHHcCCcceEEeccCccCCccceeccHHHHHHHHHH
Confidence 54 67888763 43 3344556532 23567888889998886653
No 104
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=22.59 E-value=4e+02 Score=22.33 Aligned_cols=70 Identities=13% Similarity=0.157 Sum_probs=45.2
Q ss_pred eeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCC--hhHHH
Q 005994 496 YFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLN--HEVLL 573 (666)
Q Consensus 496 ~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~--~~v~~ 573 (666)
.+.|.+...+.+.+. ....+++|..-- |.++.+.+.++.+.. .+..+++..-+ .....
T Consensus 28 ~~~~~~~~~~~~~~~---------------~~d~iiid~~~~---~~~~~~~~~~i~~~~--~~~~ii~~t~~~~~~~~~ 87 (112)
T PF00072_consen 28 TASSGEEALELLKKH---------------PPDLIIIDLELP---DGDGLELLEQIRQIN--PSIPIIVVTDEDDSDEVQ 87 (112)
T ss_dssp EESSHHHHHHHHHHS---------------TESEEEEESSSS---SSBHHHHHHHHHHHT--TTSEEEEEESSTSHHHHH
T ss_pred EECCHHHHHHHhccc---------------CceEEEEEeeec---ccccccccccccccc--ccccEEEecCCCCHHHHH
Confidence 456777777766542 246899996533 357788888886655 66677666543 34555
Q ss_pred HHHhcCCccccC
Q 005994 574 TLSKSGVVDLIG 585 (666)
Q Consensus 574 ~L~~~Gl~~~i~ 585 (666)
...+.|..+.+.
T Consensus 88 ~~~~~g~~~~l~ 99 (112)
T PF00072_consen 88 EALRAGADDYLS 99 (112)
T ss_dssp HHHHTTESEEEE
T ss_pred HHHHCCCCEEEE
Confidence 555788876653
No 105
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=22.43 E-value=2.3e+02 Score=27.53 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=40.6
Q ss_pred EEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEE
Q 005994 486 IVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQI 562 (666)
Q Consensus 486 i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v 562 (666)
+.+++++|.+.-+....+++.++++..+ +.+.|+|++..-...-.++. . +++.++....++
T Consensus 1 v~vi~i~G~I~~~~~~~l~~~l~~A~~~------------~~~~i~l~inSPGG~v~~~~-~---I~~~i~~~~~pv 61 (172)
T cd07015 1 VYVAQIKGQITSYTYDQFDRYITIAEQD------------NAEAIIIELDTPGGRADAAG-N---IVQRIQQSKIPV 61 (172)
T ss_pred CEEEEEeeEECHhHHHHHHHHHHHHhcC------------CCCeEEEEEECCCCCHHHHH-H---HHHHHHhcCcCE
Confidence 3578999999988899999988876532 34678888876555444443 3 344444444444
No 106
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=21.96 E-value=3e+02 Score=30.76 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=53.9
Q ss_pred CcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEE
Q 005994 484 HGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIA 563 (666)
Q Consensus 484 ~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~ 563 (666)
+.+.+++++|.+.=++++++.+.++.+.++ +...+|+++..=...+.+..+ +.+...+..+++.
T Consensus 26 ~~v~vi~i~g~I~~~s~~~l~r~l~~A~~~------------~a~~vvl~ldTPGGl~~sm~~----iv~~i~~s~vPV~ 89 (436)
T COG1030 26 KKVYVIEIDGAIDPASADYLQRALQSAEEE------------NAAAVVLELDTPGGLLDSMRQ----IVRAILNSPVPVI 89 (436)
T ss_pred CeEEEEEecCccCHHHHHHHHHHHHHHHhC------------CCcEEEEEecCCCchHHHHHH----HHHHHHcCCCCEE
Confidence 578999999999999999999999988653 346899999888888877766 7777778888854
Q ss_pred EE
Q 005994 564 IS 565 (666)
Q Consensus 564 la 565 (666)
..
T Consensus 90 ~y 91 (436)
T COG1030 90 GY 91 (436)
T ss_pred EE
Confidence 44
No 107
>PRK12600 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=21.09 E-value=1.6e+02 Score=25.64 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005994 291 LIPTAILITGVAILESVGIAKALAAKN 317 (666)
Q Consensus 291 ll~~a~~ia~v~~~es~~~~~~~a~~~ 317 (666)
.+..++.+++++|+.+++.+|-+.++.
T Consensus 60 ~ldvalvlAll~Fv~tva~Aryl~~g~ 86 (94)
T PRK12600 60 YLEVILLIGILAFIGTAAFSKFIEKGK 86 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455778999999999999999887543
No 108
>PTZ00445 p36-lilke protein; Provisional
Probab=20.62 E-value=1.8e+02 Score=29.39 Aligned_cols=47 Identities=23% Similarity=0.389 Sum_probs=38.1
Q ss_pred cceEEEEEcCC--CC-----ccCHH---------HHHHHHHHHHHHHhCCcEEEEEeCChhHH
Q 005994 526 RIYFVILEMAP--VT-----YIDSS---------AVQALKDLYQEYKSRDIQIAISNLNHEVL 572 (666)
Q Consensus 526 ~~~~VILDls~--V~-----~IDsS---------gl~~L~~l~~~~~~~gi~v~la~~~~~v~ 572 (666)
+++.|+.|+.. +. +.|-. +-..+..+.+++++.|+.+.++--++++.
T Consensus 42 GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 42 GIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred CCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhh
Confidence 67899999854 34 55554 66679999999999999999999988864
No 109
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=20.33 E-value=1.9e+02 Score=25.86 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCcEEEEEeCCh----------hHHHHHHhcCCc
Q 005994 546 QALKDLYQEYKSRDIQIAISNLNH----------EVLLTLSKSGVV 581 (666)
Q Consensus 546 ~~L~~l~~~~~~~gi~v~la~~~~----------~v~~~L~~~Gl~ 581 (666)
.-..++.+.++++|+++.++.-++ .+.+.+++.|+.
T Consensus 28 ~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 28 PEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 345667888999999998886544 477788887774
No 110
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=20.24 E-value=8.7e+02 Score=26.52 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=20.8
Q ss_pred HHHHHHHhhhhhhhhhhhcchhhHHHHHHHHHhhh
Q 005994 225 ILLIMKQLGKSRKYLRFLRAAGPLTGVVLGTTIVK 259 (666)
Q Consensus 225 ~l~~~~~~~~~~~~~~~~~~p~~Li~vv~gt~~~~ 259 (666)
++++.+.++++.|.++.+.+|+++++=.++.++..
T Consensus 15 lLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~ 49 (368)
T PF03616_consen 15 LLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPL 49 (368)
T ss_pred HHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHH
Confidence 34445666665555555678888776555555443
No 111
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=20.06 E-value=9.6e+02 Score=25.73 Aligned_cols=31 Identities=10% Similarity=-0.136 Sum_probs=20.3
Q ss_pred EEecccchhHHHHHHHhHHHHHHHhhhhHHhCc
Q 005994 157 IKYYSIYHAVISGFTTASAIVIALSQAKYFLGY 189 (666)
Q Consensus 157 ~~~~~ip~~Vi~Gf~~gigl~I~~~ql~~~~G~ 189 (666)
.+. .|+.+..-+...+.+..+..+...+.|.
T Consensus 49 ~~~--~g~~~~~~~~~~~~l~~~~~~~~~~~g~ 79 (358)
T PF01566_consen 49 RER--FGRGWAWFLWILIFLANIATQAAEIIGI 79 (358)
T ss_pred hhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455 6777666666666666666777666664
No 112
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=20.02 E-value=4.6e+02 Score=30.71 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=56.3
Q ss_pred eEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCCh--hHHHHHHhcCCccccCCeeeecCHHHHHHHHHHh
Q 005994 528 YFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLNH--EVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCLQH 603 (666)
Q Consensus 528 ~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~~--~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae~~ 603 (666)
+.+++|= ..+.+|+.....+.+..+++.++|.+++++--++ ++.+...+.-+.+. |+-..+.+.++++++.++.
T Consensus 186 ~vlllDE-PtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~~~~~~~f~~~ 261 (617)
T TIGR00955 186 PLLFCDE-PTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSPDQAVPFFSDL 261 (617)
T ss_pred CEEEeeC-CCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCHHHHHHHHHHc
Confidence 5788885 6899999999999999999988888887775543 57777777666553 4555667788888876653
Done!