Query 005994
Match_columns 666
No_of_seqs 420 out of 2331
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 13:09:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005994.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005994hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 99.9 4E-25 1.4E-29 241.9 24.6 239 154-419 114-362 (429)
2 3llo_A Prestin; STAS domain, c 99.9 1.4E-23 4.9E-28 196.0 11.9 139 456-602 1-140 (143)
3 4dgh_A Sulfate permease family 99.8 2E-21 6.9E-26 178.5 9.9 127 467-606 2-128 (130)
4 4dgf_A Sulfate transporter sul 99.8 4.1E-21 1.4E-25 177.7 8.5 129 464-606 2-131 (135)
5 2kln_A Probable sulphate-trans 99.8 4.3E-20 1.5E-24 169.6 10.5 124 471-603 1-124 (130)
6 3ny7_A YCHM protein, sulfate t 99.7 1.1E-17 3.9E-22 150.9 9.8 103 482-598 14-116 (118)
7 2ka5_A Putative anti-sigma fac 99.6 3.4E-15 1.2E-19 136.0 9.0 106 480-600 16-122 (125)
8 3t6o_A Sulfate transporter/ant 99.5 1.8E-14 6.1E-19 130.3 10.5 105 482-600 11-119 (121)
9 1th8_B Anti-sigma F factor ant 99.5 1.4E-14 4.6E-19 129.4 8.7 105 483-601 10-114 (116)
10 1h4x_A SPOIIAA, anti-sigma F f 99.5 1.9E-14 6.4E-19 129.0 9.5 107 483-604 9-115 (117)
11 4hyl_A Stage II sporulation pr 99.5 3.6E-14 1.2E-18 127.3 10.6 103 482-600 10-112 (117)
12 1sbo_A Putative anti-sigma fac 99.5 9E-14 3.1E-18 122.7 11.1 101 482-596 10-110 (110)
13 3oiz_A Antisigma-factor antago 99.4 2.2E-14 7.5E-19 125.1 3.3 84 484-581 15-98 (99)
14 3zxn_A RSBS, anti-sigma-factor 99.3 7.5E-12 2.5E-16 113.5 12.5 106 484-603 11-117 (123)
15 3agd_A Salt-tolerant glutamina 96.2 0.0073 2.5E-07 64.5 7.2 85 484-568 324-445 (456)
16 3bl4_A Uncharacterized protein 87.1 0.74 2.5E-05 40.9 5.2 99 484-601 19-122 (124)
17 2q3l_A Uncharacterized protein 84.4 3.1 0.00011 36.7 8.0 107 484-600 19-125 (126)
18 3qe7_A Uracil permease; uracil 82.1 14 0.0005 39.6 13.7 83 321-404 41-137 (429)
19 3pdw_A Uncharacterized hydrola 58.2 25 0.00086 34.1 8.1 55 527-581 6-65 (266)
20 2pr7_A Haloacid dehalogenase/e 54.9 19 0.00064 30.7 5.8 58 527-584 2-61 (137)
21 3rst_A Signal peptide peptidas 54.6 37 0.0013 33.2 8.5 68 484-563 3-83 (240)
22 3ghf_A Septum site-determining 41.7 89 0.0031 27.1 7.9 80 485-581 16-98 (120)
23 3qgm_A P-nitrophenyl phosphata 37.9 28 0.00094 33.8 4.5 55 527-581 8-67 (268)
24 3nvb_A Uncharacterized protein 37.6 1.8E+02 0.0062 30.6 11.0 52 526-577 221-292 (387)
25 2ook_A Hypothetical protein; s 36.8 1.9 6.5E-05 38.2 -3.9 104 484-601 19-126 (127)
26 2csu_A 457AA long hypothetical 33.0 2E+02 0.0067 30.9 10.7 85 498-602 351-443 (457)
27 3epr_A Hydrolase, haloacid deh 32.8 39 0.0013 32.8 4.7 55 527-581 5-64 (264)
28 3dcm_X AdoMet, uncharacterized 32.4 77 0.0026 30.0 6.3 62 535-602 24-100 (192)
29 2wfb_A Putative uncharacterize 31.5 66 0.0023 27.5 5.4 50 550-602 58-109 (120)
30 3n07_A 3-deoxy-D-manno-octulos 30.2 29 0.00099 32.7 3.0 75 526-604 24-112 (195)
31 3viv_A 441AA long hypothetical 28.4 1.1E+02 0.0038 29.6 7.0 67 482-564 6-72 (230)
32 3ij5_A 3-deoxy-D-manno-octulos 28.2 1.2E+02 0.0042 28.6 7.3 72 526-603 48-135 (211)
33 1eo1_A Hypothetical protein MT 27.6 1E+02 0.0035 26.4 6.0 51 550-603 56-107 (124)
34 2yx6_A Hypothetical protein PH 26.2 95 0.0033 26.5 5.5 50 550-602 54-104 (121)
35 3bf0_A Protease 4; bacterial, 26.2 1.4E+02 0.0049 33.2 8.3 69 483-563 300-375 (593)
36 3ib6_A Uncharacterized protein 25.9 52 0.0018 30.1 4.0 38 547-584 38-80 (189)
37 2i33_A Acid phosphatase; HAD s 24.4 62 0.0021 31.9 4.4 55 526-581 58-144 (258)
38 1o13_A Probable NIFB protein; 23.3 88 0.003 27.6 4.8 50 550-602 67-117 (136)
39 3n1u_A Hydrolase, HAD superfam 23.0 35 0.0012 31.7 2.1 74 526-603 18-105 (191)
40 1zjj_A Hypothetical protein PH 22.9 84 0.0029 30.3 5.1 71 528-600 2-77 (263)
41 1rdu_A Conserved hypothetical 22.6 77 0.0026 26.8 4.1 50 551-603 54-104 (116)
42 3hv2_A Response regulator/HD d 22.1 2.1E+02 0.0071 24.4 7.2 69 527-600 59-130 (153)
43 2re2_A Uncharacterized protein 21.9 1.1E+02 0.0036 27.0 5.0 49 550-602 70-119 (136)
44 2gmw_A D,D-heptose 1,7-bisphos 21.8 61 0.0021 30.4 3.6 55 527-581 25-105 (211)
45 2hx1_A Predicted sugar phospha 21.3 82 0.0028 30.7 4.7 56 526-581 13-73 (284)
46 3kht_A Response regulator; PSI 20.8 1.3E+02 0.0044 25.4 5.4 74 527-603 52-128 (144)
47 3grc_A Sensor protein, kinase; 20.2 1.4E+02 0.0049 24.9 5.5 56 528-586 52-110 (140)
48 2fp4_B Succinyl-COA ligase [GD 20.0 4.2E+02 0.014 27.7 10.0 87 498-602 300-390 (395)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=99.93 E-value=4e-25 Score=241.87 Aligned_cols=239 Identities=16% Similarity=0.141 Sum_probs=195.0
Q ss_pred ceeEEecccchhHHHHHHHhHHHHHHHhhhhHHhCcccCCCCccHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHhh
Q 005994 154 VWWIKYYSIYHAVISGFTTASAIVIALSQAKYFLGYDVARSSKIVPLIKSIILGADKFSWPPFLVGSIILAILLIMKQLG 233 (666)
Q Consensus 154 G~l~~~~~ip~~Vi~Gf~~gigl~I~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~ 233 (666)
+++.|+ +|+.|++.|++.||+.++..++++..|.... .+..++..+.++++++++++++.++.
T Consensus 114 ~~l~~~--~PpvviG~~i~~IGl~l~~~~~~~~~~~~~~---------------~~~~~~~~~~la~~tl~iii~~~~~~ 176 (429)
T 3qe7_A 114 GWLDVL--FPPAAMGAIVAVIGLELAGVAAGMAGLLPAE---------------GQTPDSKTIIISITTLAVTVLGSVLF 176 (429)
T ss_dssp HHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHTSSCBT---------------TBCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHH--CCCeeeHHHHHHHHHHHHHHHHHhccccCCC---------------CccccHHHHHHHHHHHHHHHHHHHHh
Confidence 389999 9999999999999999999999875432110 03356778899999999988887765
Q ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhhcCCCcceeeeccC-CCCCCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005994 234 KSRKYLRFLRAAGPLTGVVLGTTIVKIYHPPSITLVGDIP-QGLPNFSIP-KSFECAMSLIPTAILITGVAILESVGIAK 311 (666)
Q Consensus 234 ~~~~~~~~~~~p~~Li~vv~gt~~~~~~~~~~v~~vg~ip-~glp~~~~P-~~~~~~~~ll~~a~~ia~v~~~es~~~~~ 311 (666)
|+ +++.+++|+++++|+++++.++..+.+.+++.| .++|.+..| ++++. +...+.++++.++|++++.+
T Consensus 177 kg-----~~~~~aiLigivvg~~~a~~~G~~d~~~v~~a~~~~lP~~~~P~f~~~~----i~~i~~i~lV~~~Eslg~~~ 247 (429)
T 3qe7_A 177 RG-----FLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTLYTPRFEWFA----ILTILPAALVVIAEHVGHLV 247 (429)
T ss_dssp ST-----TTTTHHHHHHHHHHHHHHHHHHHTTSSHHHHSCSSCCCCCCCCCCCHHH----HHHHTHHHHHHHHHHHHHHH
T ss_pred cc-----cchhhHHHHHHHHHHHHHHHhcCCCcccccccccccccCCCCCcccHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 53 456678899999999999988766666566655 467777777 34443 33456788899999999999
Q ss_pred HHHhhcCC----CCChhhHHHHhhhhhhhhhccCCCCcccccchhhhhhhcCCccchHHHHHHHHHHHHHHH--hHHHHh
Q 005994 312 ALAAKNGY----ELDSNQELFGLGVANILGSFFSAYPTTGSFSRSAVNHESGAKTGLSGVITGIIMACALLF--MTPLFE 385 (666)
Q Consensus 312 ~~a~~~~~----~~d~nrEL~a~GlaNi~sglfGg~P~~~s~srSav~~~sGarT~la~iv~g~~~ll~ll~--l~~ll~ 385 (666)
+.++..++ +.+.|||+.++|++|+++|+|||+|.|++..+++++..+|++||++.+++|++++++.++ ++++++
T Consensus 248 av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~ 327 (429)
T 3qe7_A 248 VTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQ 327 (429)
T ss_dssp HHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHT
T ss_pred HHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888774 447899999999999999999999998877777888899999999999999999887754 678999
Q ss_pred hhcHHHHHHHHHHHHhhccCHHHHHHH--HhcCccC
Q 005994 386 HIPQCALAAIVVSAVMGLVDYDEAIFL--WHVDKKD 419 (666)
Q Consensus 386 ~IP~avLaaili~~~~~li~~~~~~~l--~~~~~~d 419 (666)
.||.++++|+.++ .++++...+++.+ .|++..+
T Consensus 328 ~IP~~vlgg~~l~-lfg~i~~~Gi~~l~~~~v~~~~ 362 (429)
T 3qe7_A 328 MIPLPVMGGVSLL-LYGVIGASGIRVLIESKVDYNK 362 (429)
T ss_dssp TSCHHHHHHHHHH-HHHHHHHHHHHHHHHTTSCTTS
T ss_pred HccHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999998766 9999999999988 7777543
No 2
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=99.90 E-value=1.4e-23 Score=196.03 Aligned_cols=139 Identities=31% Similarity=0.474 Sum_probs=122.1
Q ss_pred CcceEEeeccCCCcccccCccCCCccccCcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcC
Q 005994 456 NPHIAILGRLPGTTVYRNTQQYPEAYTYHGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMA 535 (666)
Q Consensus 456 ~p~~~~lg~~~~t~~~r~~~~~~~~~~~~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls 535 (666)
+|++.+||++|+++.||++++|++.++.+++.|++++|+|+|+|+++|++.+.+.....+. .+.+.|||||+
T Consensus 1 rP~~~~Lg~~~~t~~~~~~~~~~~~~~~~~v~v~~~~G~L~f~~a~~~~~~l~~~~~~~~~--------~~~~~vvlDls 72 (143)
T 3llo_A 1 SPSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSSALKRKTGVNGS--------ENIHTVILDFT 72 (143)
T ss_dssp CCSEEEEEECTTSSCEEETTTSTTCBCCTTEEEEEECSCHHHHHHHHHHHC-------------------CCSEEEEECT
T ss_pred CCcEEEEEcCCCCCccccHHHCCCCccCCCeEEEEeCCCeEechHHHHHHHHHHHHccCCC--------CCceEEEEECC
Confidence 6999999999999999999999999999999999999999999999999999876532100 13578999999
Q ss_pred CCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCChhHHHHHHhcCCccccC-CeeeecCHHHHHHHHHH
Q 005994 536 PVTYIDSSAVQALKDLYQEYKSRDIQIAISNLNHEVLLTLSKSGVVDLIG-KEWYFVRAHDAVQVCLQ 602 (666)
Q Consensus 536 ~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~~~v~~~L~~~Gl~~~i~-~~~~f~s~~~Al~~ae~ 602 (666)
+|++||+||+++|.++.++++++|++++++++++++++.|+++|+.+.++ ++++|+|++||++++++
T Consensus 73 ~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~~if~s~~~Al~~~~~ 140 (143)
T 3llo_A 73 QVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTSNRFFENPALKELLFHSIHDAVLGSQV 140 (143)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCCHHHHHHHHHTTTTSSGGGGGGEESSHHHHHHHTSS
T ss_pred CCccccHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeeccCccceEECcHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999887 77899999999998754
No 3
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=99.85 E-value=2e-21 Score=178.51 Aligned_cols=127 Identities=20% Similarity=0.379 Sum_probs=117.7
Q ss_pred CCcccccCccCCCccccCcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHH
Q 005994 467 GTTVYRNTQQYPEAYTYHGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQ 546 (666)
Q Consensus 467 ~t~~~r~~~~~~~~~~~~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~ 546 (666)
+|+.|+++++|++.+..+++.|++++|+|+|+|+++|++.+.+.. ++.+.|||||++|++||+||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~v~~~~G~L~f~~a~~~~~~l~~~~-------------~~~~~vvlDls~v~~iDssgl~ 68 (130)
T 4dgh_A 2 NAEMSYELAQHGRSTLPRELAVYALEGPFFFAAAETFERVMGSIQ-------------ETPQILILRLKWVPFMDITGIQ 68 (130)
T ss_dssp CHHHHHHHHHTTCSSCCTTEEEEECCSSCCHHHHHHHHHHHHHSS-------------SCCSEEEEECTTCCCCCHHHHH
T ss_pred chhhhhhHhhccccCCCCCEEEEEEeeeEeehhHHHHHHHHHHhc-------------cCCCEEEEECCCCCcccHHHHH
Confidence 578899999999998999999999999999999999999987531 1347899999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeCChhHHHHHHhcCCccccCCeeeecCHHHHHHHHHHhhhh
Q 005994 547 ALKDLYQEYKSRDIQIAISNLNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCLQHVQS 606 (666)
Q Consensus 547 ~L~~l~~~~~~~gi~v~la~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae~~l~~ 606 (666)
+|.++.++++++|++++++++++++++.|+++|+.+.++++++|+|+++|+++|++++..
T Consensus 69 ~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~s~~~Al~~~~~~~~~ 128 (130)
T 4dgh_A 69 TLEEMIQSFHKRGIKVLISGANSRVSQKLVKAGIVKLVGEQNVYPVFEGALSAALTEIEA 128 (130)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCHHHHHHHHHTTHHHHHCGGGEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCcccccCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999988754
No 4
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=99.83 E-value=4.1e-21 Score=177.74 Aligned_cols=129 Identities=22% Similarity=0.319 Sum_probs=110.3
Q ss_pred ccCCCcccccCccCCCccccC-cEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCH
Q 005994 464 RLPGTTVYRNTQQYPEAYTYH-GIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDS 542 (666)
Q Consensus 464 ~~~~t~~~r~~~~~~~~~~~~-~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDs 542 (666)
++|||+.|+++++| +..+.+ ++.|++++|+|+|+|+++|++++.+.. ++.+.|||||++|++||+
T Consensus 2 ~i~gt~~~~~~~~~-~~~~~~~~i~v~~l~G~L~f~~a~~~~~~l~~~~-------------~~~~~vvlDls~v~~iDs 67 (135)
T 4dgf_A 2 NADGLEGMDDPDAT-SKKVVPLGVEIYEINGPFFFGVADRLKGVLDVIE-------------ETPKVFILRMRRVPVIDA 67 (135)
T ss_dssp --------CCTTCG-GGSCCCTTEEEEECCSSBSHHHHHHHTTGGGGCS-------------SCCSEEEEECTTCSCBCH
T ss_pred CCCCCCcccchhhh-ccccCCCCEEEEEeeceEEehhHHHHHHHHHHhc-------------CCCcEEEEEcCCCCccCH
Confidence 57899999999999 666666 999999999999999999999886431 134789999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeCChhHHHHHHhcCCccccCCeeeecCHHHHHHHHHHhhhh
Q 005994 543 SAVQALKDLYQEYKSRDIQIAISNLNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCLQHVQS 606 (666)
Q Consensus 543 Sgl~~L~~l~~~~~~~gi~v~la~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae~~l~~ 606 (666)
||+++|.++.++++++|++++++++++++++.|+++|+.+.++++++|+|+++|++++++.+..
T Consensus 68 sgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~~~~~~~ 131 (135)
T 4dgf_A 68 TGMHALWEFQESCEKRGTILLLSGVSDRLYGALNRFGFIEALGEERVFDHIDKALAYAKLLVET 131 (135)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEESCCHHHHHHHHHHTHHHHHCGGGBCSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCccceeCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999887654
No 5
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=99.81 E-value=4.3e-20 Score=169.60 Aligned_cols=124 Identities=25% Similarity=0.400 Sum_probs=113.1
Q ss_pred cccCccCCCccccCcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHH
Q 005994 471 YRNTQQYPEAYTYHGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKD 550 (666)
Q Consensus 471 ~r~~~~~~~~~~~~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~ 550 (666)
|++++++|++++.+++.|++++|+|+|+|++.|++.+.+.....+ .+.+.|||||++|++||+||+++|.+
T Consensus 1 ~~~~~~~~~~~~~~~v~v~~l~G~L~f~~a~~~~~~l~~~~~~~~---------~~~~~vvlDls~v~~iDssgl~~L~~ 71 (130)
T 2kln_A 1 MHDIDDYPQAKRVPGLVVYRYDAPLCFANAEDFRRRALTVVDQDP---------GQVEWFVLNAESNVEVDLTALDALDQ 71 (130)
T ss_dssp CCSSSCCCCCCCSSSEEEEECCSCCBTTTHHHHHHHHHHHTTSSS---------SCCEEEEEECSCCSSSBCSTTTHHHH
T ss_pred CCChhhCcCcccCCCEEEEEECCceEechHHHHHHHHHHHHhcCC---------CCceEEEEECCCCChhhHHHHHHHHH
Confidence 678889999888999999999999999999999999988753210 13579999999999999999999999
Q ss_pred HHHHHHhCCcEEEEEeCChhHHHHHHhcCCccccCCeeeecCHHHHHHHHHHh
Q 005994 551 LYQEYKSRDIQIAISNLNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCLQH 603 (666)
Q Consensus 551 l~~~~~~~gi~v~la~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae~~ 603 (666)
+.++++++|++++++++++++++.|+++|+.+.++++++|+|++||+++++.+
T Consensus 72 ~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~~~~ 124 (130)
T 2kln_A 72 LRTELLRRGIVFAMARVKQDLRESLRAASLLDKIGEDHIFMTLPTAVQAFRRR 124 (130)
T ss_dssp HHHHHHTTTEEEEEECCSSHHHHHHHHCTTHHHHCTTEEESCHHHHHHHHTTC
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCcceeECCHHHHHHHHHhh
Confidence 99999999999999999999999999999999998889999999999998753
No 6
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=99.72 E-value=1.1e-17 Score=150.87 Aligned_cols=103 Identities=19% Similarity=0.370 Sum_probs=95.4
Q ss_pred ccCcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcE
Q 005994 482 TYHGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQ 561 (666)
Q Consensus 482 ~~~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~ 561 (666)
..+++.|++++|+|||+|++++++++.+.. ++.+.+||||++|++||+||+++|.++.+++++ |++
T Consensus 14 ~~~~v~v~~l~G~L~f~~a~~l~~~l~~~~-------------~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~ 79 (118)
T 3ny7_A 14 VPDDVLVLRVIGPLFFAAAEGLFTDLESRL-------------EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCE 79 (118)
T ss_dssp CCTTEEEEEEESCBCHHHHHHHHHHHHTTC-------------TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCE
T ss_pred CCCCEEEEEEeceeEehhHHHHHHHHHHhc-------------CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCE
Confidence 447899999999999999999999987643 123789999999999999999999999999999 999
Q ss_pred EEEEeCChhHHHHHHhcCCccccCCeeeecCHHHHHH
Q 005994 562 IAISNLNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQ 598 (666)
Q Consensus 562 v~la~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~ 598 (666)
++++++++++++.|+++|+.+.++++++|+|++||++
T Consensus 80 l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~s~~~Al~ 116 (118)
T 3ny7_A 80 LRVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMA 116 (118)
T ss_dssp EEEECCCHHHHHHHHHTTCCCBTTTEEEESSHHHHTT
T ss_pred EEEecCCHHHHHHHHHcCChhhcChhhhcCCHHHHHh
Confidence 9999999999999999999999999999999999985
No 7
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=99.58 E-value=3.4e-15 Score=135.98 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=95.8
Q ss_pred ccccCcEEEEEeccceeeccHHHHHHHHHH-hhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhC
Q 005994 480 AYTYHGIVIVRIDAPIYFANISFLKDRLRE-YEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSR 558 (666)
Q Consensus 480 ~~~~~~i~Iirl~G~L~F~na~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~ 558 (666)
.+..+++.+++++|+|+|+|++.|++.+.+ .... +.+.+|+||++|++||+||+++|.++.++++++
T Consensus 16 ~~~~~~~~vv~l~G~Ld~~~a~~l~~~l~~~~~~~------------~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~ 83 (125)
T 2ka5_A 16 YKIVDDVVILMPNKELNIENAHLFKKWVFDEFLNK------------GYNKIFLVLSDVESIDSFSLGVIVNILKSISSS 83 (125)
T ss_dssp EEECSSCEEECCCSCCSGGGTHHHHHHHHHHTTTT------------TCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHH
T ss_pred ceeeCCEEEEEEecEEecccHHHHHHHHHHHHhhC------------CCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHc
Confidence 455678999999999999999999999988 5431 236899999999999999999999999999999
Q ss_pred CcEEEEEeCChhHHHHHHhcCCccccCCeeeecCHHHHHHHH
Q 005994 559 DIQIAISNLNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVC 600 (666)
Q Consensus 559 gi~v~la~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~a 600 (666)
|+++.++++++++++.|+.+|+.+.+. +|+|.+||++++
T Consensus 84 g~~l~l~~~~~~v~~~l~~~gl~~~~~---i~~s~~~Al~~~ 122 (125)
T 2ka5_A 84 GGFFALVSPNEKVERVLSLTNLDRIVK---IYDTISEAMEEV 122 (125)
T ss_dssp TCEEEEECCCHHHHHHHHHTTSTTTSE---EESSHHHHHTTT
T ss_pred CCEEEEEeCCHHHHHHHHHcCCCceEE---ecCCHHHHHHHh
Confidence 999999999999999999999998874 999999998754
No 8
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=99.54 E-value=1.8e-14 Score=130.30 Aligned_cols=105 Identities=10% Similarity=0.131 Sum_probs=94.8
Q ss_pred ccCcEEEEEeccce---eeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHh-
Q 005994 482 TYHGIVIVRIDAPI---YFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKS- 557 (666)
Q Consensus 482 ~~~~i~Iirl~G~L---~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~- 557 (666)
+.+++.+++++|++ +|+|++.+++++.+.... .+.+.+|+||++|+|||++|+++|..+.+++++
T Consensus 11 ~~~~~~vv~l~G~l~~ld~~~~~~l~~~l~~~l~~-----------~~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~ 79 (121)
T 3t6o_A 11 HEAQVTVISFPAVFQRLRETEVEQIASTFLAAMQG-----------AQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKED 79 (121)
T ss_dssp EETTEEEEECCGGGSEECHHHHHHHHHHHHHTTCC-----------SSSCEEEEECTTCCEECHHHHHHHHHHHHHHTTS
T ss_pred EECCEEEEEEccccccCchhhHHHHHHHHHHHHhh-----------cCCCeEEEECCCCCEEcHHHHHHHHHHHHHHHHh
Confidence 45789999999998 899999999998776521 134689999999999999999999999999999
Q ss_pred CCcEEEEEeCChhHHHHHHhcCCccccCCeeeecCHHHHHHHH
Q 005994 558 RDIQIAISNLNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVC 600 (666)
Q Consensus 558 ~gi~v~la~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~a 600 (666)
+|+++.++++++++++.|+.+|+.+.++ +|+|+++|++..
T Consensus 80 ~g~~l~l~~~~~~v~~~l~~~gl~~~~~---i~~~~~~Al~~~ 119 (121)
T 3t6o_A 80 QQGVFALCSVSPYCVEVLQVTHIDEVWP---RYSTKQEALLAM 119 (121)
T ss_dssp TTCEEEEESCCHHHHHHHTTCSGGGGSC---EESSHHHHHHHT
T ss_pred cCCEEEEEeCCHHHHHHHHHhCccceec---ccCCHHHHHHHh
Confidence 9999999999999999999999999886 999999999764
No 9
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=99.53 E-value=1.4e-14 Score=129.41 Aligned_cols=105 Identities=18% Similarity=0.276 Sum_probs=95.3
Q ss_pred cCcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEE
Q 005994 483 YHGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQI 562 (666)
Q Consensus 483 ~~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v 562 (666)
.+++.+++++|+++|+|++.+++.+.+..... +.+.+|+||++|++||++|+++|.++.++++++|+++
T Consensus 10 ~~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~-----------~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l 78 (116)
T 1th8_B 10 KQDVLIVRLSGELDHHTAEELREQVTDVLENR-----------AIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQM 78 (116)
T ss_dssp ETTEEEEEEEEEESHHHHHHHHHHHHHHHHSS-----------CCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCE
T ss_pred ECCEEEEEEeeeeccccHHHHHHHHHHHHhcC-----------CCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCeE
Confidence 46899999999999999999999998875421 1368999999999999999999999999999999999
Q ss_pred EEEeCChhHHHHHHhcCCccccCCeeeecCHHHHHHHHH
Q 005994 563 AISNLNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCL 601 (666)
Q Consensus 563 ~la~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae 601 (666)
.++++++++++.|+.+|+.+.+ .+|+++++|+++++
T Consensus 79 ~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~~ 114 (116)
T 1th8_B 79 VVCAVSPAVKRLFDMSGLFKII---RVEADEQFALQALG 114 (116)
T ss_dssp EEESCCHHHHHHHHHHTGGGTS---EEESSHHHHHHHTT
T ss_pred EEEeCCHHHHHHHHHhCCceeE---EEeCCHHHHHHhcc
Confidence 9999999999999999999877 49999999998764
No 10
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=99.53 E-value=1.9e-14 Score=128.97 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=94.8
Q ss_pred cCcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEE
Q 005994 483 YHGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQI 562 (666)
Q Consensus 483 ~~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v 562 (666)
.+++.+++++|+++|+|++.+++.+.+..... +.+.+++||++|+++|++|+++|.++.++++++|+++
T Consensus 9 ~~~~~vl~l~G~l~~~~~~~l~~~l~~~~~~~-----------~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l 77 (117)
T 1h4x_A 9 TRETVVIRLFGELDHHAVEQIRAKISTAIFQG-----------AVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRT 77 (117)
T ss_dssp ETTEEEEEEEEEECHHHHHHHHHHHHHHHHHT-----------SCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEE
T ss_pred eCCEEEEEEEeEEchhhHHHHHHHHHHHHhcC-----------CCCEEEEECCCCcEechHHHHHHHHHHHHHHHcCCEE
Confidence 46899999999999999999999998876321 2358999999999999999999999999999999999
Q ss_pred EEEeCChhHHHHHHhcCCccccCCeeeecCHHHHHHHHHHhh
Q 005994 563 AISNLNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCLQHV 604 (666)
Q Consensus 563 ~la~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae~~l 604 (666)
.++++++++++.|+.+|+.+.+ +|++.++|++.++++.
T Consensus 78 ~l~~~~~~v~~~l~~~gl~~~~----i~~~~~~Al~~~~~~~ 115 (117)
T 1h4x_A 78 ILLNPSPTMRKVFQFSGLGPWM----MDATEEEAIDRVRGIV 115 (117)
T ss_dssp EEESCCHHHHHHHHHTTCGGGE----ECSCHHHHHHHTC---
T ss_pred EEEeCCHHHHHHHHHhCCceEE----EeCCHHHHHHHHHHhh
Confidence 9999999999999999999876 8999999998876553
No 11
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=99.52 E-value=3.6e-14 Score=127.28 Aligned_cols=103 Identities=16% Similarity=0.271 Sum_probs=93.8
Q ss_pred ccCcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcE
Q 005994 482 TYHGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQ 561 (666)
Q Consensus 482 ~~~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~ 561 (666)
..+++.+++++|+|+|.|++.+++.+.+.... .. .+|+||++|++||++|+++|.++.++++++|++
T Consensus 10 ~~~~~~v~~l~G~ld~~~~~~l~~~l~~~~~~------------~~-~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~ 76 (117)
T 4hyl_A 10 TEQGIDIITLHGHLDTRSSPAVQAAVLPRVTA------------KG-KMILDLREVSYMSSAGLRVLLSLYRHTSNQQGA 76 (117)
T ss_dssp EETTEEEEEEEEEECSSSHHHHHHHHGGGCCT------------TC-EEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCE
T ss_pred EECCEEEEEEEeEEcchhHHHHHHHHHHHHcc------------CC-eEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCE
Confidence 34689999999999999999999999876421 12 899999999999999999999999999999999
Q ss_pred EEEEeCChhHHHHHHhcCCccccCCeeeecCHHHHHHHH
Q 005994 562 IAISNLNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVC 600 (666)
Q Consensus 562 v~la~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~a 600 (666)
+.++++++++++.|+.+|+.+.++ +|+|+++|++..
T Consensus 77 l~l~~~~~~v~~~l~~~gl~~~~~---i~~~~~~Al~~~ 112 (117)
T 4hyl_A 77 LVLVGVSEEIRDTMEITGFWNFFT---ACASMDEALRIL 112 (117)
T ss_dssp EEEECCCHHHHHHHHHHTCGGGCE---EESCHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHhCccceee---ecCCHHHHHHHh
Confidence 999999999999999999998885 999999999875
No 12
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=99.50 E-value=9e-14 Score=122.72 Aligned_cols=101 Identities=21% Similarity=0.284 Sum_probs=90.8
Q ss_pred ccCcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcE
Q 005994 482 TYHGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQ 561 (666)
Q Consensus 482 ~~~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~ 561 (666)
+.+++.+++++|+++|+|++.+++.+.+..... ..+.+|+||++|+++|++|+++|.++.++++++|++
T Consensus 10 ~~~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~-----------~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~ 78 (110)
T 1sbo_A 10 EQDDKAIVRVQGDIDAYNSSELKEQLRNFISTT-----------SKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKE 78 (110)
T ss_dssp ECSSEEEEEEESCBSTTTTTHHHHHHHTHHHHC-----------SCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCE
T ss_pred EeCCEEEEEEeeEEccccHHHHHHHHHHHHhcC-----------CCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCE
Confidence 346899999999999999999999998765421 125799999999999999999999999999999999
Q ss_pred EEEEeCChhHHHHHHhcCCccccCCeeeecCHHHH
Q 005994 562 IAISNLNHEVLLTLSKSGVVDLIGKEWYFVRAHDA 596 (666)
Q Consensus 562 v~la~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~A 596 (666)
+.++++++++++.|+.+|+.+.++ +|+|.+||
T Consensus 79 l~l~~~~~~v~~~l~~~gl~~~~~---i~~~~~~A 110 (110)
T 1sbo_A 79 FILSSLKESISRILKLTHLDKIFK---ITDTVEEA 110 (110)
T ss_dssp EEEESCCHHHHHHHHHTTCGGGSC---BCSSGGGC
T ss_pred EEEEeCCHHHHHHHHHhCccceee---ccCCcccC
Confidence 999999999999999999999886 89988875
No 13
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=99.45 E-value=2.2e-14 Score=125.15 Aligned_cols=84 Identities=15% Similarity=0.250 Sum_probs=71.4
Q ss_pred CcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEE
Q 005994 484 HGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIA 563 (666)
Q Consensus 484 ~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~ 563 (666)
+++.+++++|+|||+|+++|++++... ++.+.+|+||++|++||+||+++|.++.++++++|+++.
T Consensus 15 g~~~v~~l~G~L~f~~a~~~~~~l~~~--------------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~ 80 (99)
T 3oiz_A 15 GRERIYRVEGQLFYASVEDFMAAFDFR--------------EALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVR 80 (99)
T ss_dssp SSEEEEEEEEEECGGGHHHHHHTCCTT--------------SCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEEeeEEehhhHHHHHHHHhhc--------------CCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEE
Confidence 469999999999999999999987521 134689999999999999999999999999999999999
Q ss_pred EEeCChhHHHHHHhcCCc
Q 005994 564 ISNLNHEVLLTLSKSGVV 581 (666)
Q Consensus 564 la~~~~~v~~~L~~~Gl~ 581 (666)
++++++++++.|+++|+.
T Consensus 81 l~~~~~~v~~~l~~~g~~ 98 (99)
T 3oiz_A 81 IVGMNEASETMVDRLAIH 98 (99)
T ss_dssp EESHHHHHTTCC------
T ss_pred EEcCCHHHHHHHHHhcCC
Confidence 999999999999999974
No 14
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=99.34 E-value=7.5e-12 Score=113.49 Aligned_cols=106 Identities=9% Similarity=0.118 Sum_probs=94.2
Q ss_pred CcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEE
Q 005994 484 HGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIA 563 (666)
Q Consensus 484 ~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~ 563 (666)
.++.++.+.|.|++.+++.+++++.+.+.+ .+.+.+|+|+++|+++|+++++.|.++++.++..|.+++
T Consensus 11 ~~vlvv~l~G~lD~~~a~~l~~~ll~~i~~-----------~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~ 79 (123)
T 3zxn_A 11 DDYWVVAIEETLHDQSVIQFKEELLHNITG-----------VAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFV 79 (123)
T ss_dssp TTEEEEECCCCC-CHHHHHHHHHHHHHHTS-----------SCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CCEEEEEEeEeeCHHHHHHHHHHHHHHHHh-----------cCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEE
Confidence 468999999999999999999999887642 235789999999999999999999999999999999999
Q ss_pred EEeCChhHHHHHHhcCCc-cccCCeeeecCHHHHHHHHHHh
Q 005994 564 ISNLNHEVLLTLSKSGVV-DLIGKEWYFVRAHDAVQVCLQH 603 (666)
Q Consensus 564 la~~~~~v~~~L~~~Gl~-~~i~~~~~f~s~~~Al~~ae~~ 603 (666)
++|++|++.+.|...|+. +.+ .+|.|+++|++.+...
T Consensus 80 l~Gi~p~va~~l~~~G~~l~~i---~~~~~l~~Al~~l~~~ 117 (123)
T 3zxn_A 80 LTGIKPAVAITLTEMGLDLRGM---ATALNLQKGLDKLKNL 117 (123)
T ss_dssp EECCCHHHHHHHHHTTCCSTTS---EEESSHHHHHHHHHHH
T ss_pred EEcCCHHHHHHHHHhCCCccce---EEECCHHHHHHHHHHh
Confidence 999999999999999995 544 4999999999987643
No 15
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase; 2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A
Probab=96.17 E-value=0.0073 Score=64.49 Aligned_cols=85 Identities=16% Similarity=0.256 Sum_probs=66.8
Q ss_pred CcEEEEEeccceeeccHHHHHHHHHHhhhhc------------ccc-------------------------cCCCCCccc
Q 005994 484 HGIVIVRIDAPIYFANISFLKDRLREYEVDV------------DRS-------------------------TRRGPEVER 526 (666)
Q Consensus 484 ~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~------------~~~-------------------------~~~~~~~~~ 526 (666)
+++.|++++|.|.|+.++.+.+++.+..... ++| .++......
T Consensus 324 ~~~~~~~l~g~~~f~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (456)
T 3agd_A 324 GDRVFLHLQGVIRFGGAEAVLDALTDLRTGAEKPGTGWDAAVYPRWQEAAADRAALSAATGGGAVHEAAAAAARDENDGP 403 (456)
T ss_dssp TTEEEEEEEEEESHHHHHHHHHHHHHTCCC-------CCTTTCHHHHHHHHSHHHHHHHHCCTTTHHHHHHHC---CCCC
T ss_pred CcEEEEEeeceechhHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 4699999999999999999999988761100 000 000000134
Q ss_pred ceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 005994 527 IYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLN 568 (666)
Q Consensus 527 ~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~ 568 (666)
.+.||||+++|+.+|..|..++.+..++++..|+++.+.++.
T Consensus 404 ~~~vv~d~~~v~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 445 (456)
T 3agd_A 404 IRTVVLNLARVDRIDDVGRRLIAEGVRRLQADGVRVEVEDPE 445 (456)
T ss_dssp CCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CcEEEEEeeecccccHHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 679999999999999999999999999999999999999876
No 16
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=87.13 E-value=0.74 Score=40.91 Aligned_cols=99 Identities=15% Similarity=0.093 Sum_probs=68.1
Q ss_pred CcEEEEEecc--ceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcE
Q 005994 484 HGIVIVRIDA--PIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQ 561 (666)
Q Consensus 484 ~~i~Iirl~G--~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~ 561 (666)
+||+.+++.+ ++.-..+..+...+.+.... +...+++|++....++..+.+.+.+-. .=-.
T Consensus 19 dGIl~~~~~~~~~i~~e~A~~~~~~~~~l~~~------------~~~~vL~D~r~~~~~s~~AR~~~~~~~-----~~~a 81 (124)
T 3bl4_A 19 DGILRLTWPRGAAITAADAERAMLRVNQLCGD------------DRHPMLVDMATTADVSRGARAVFGRPC-----QASR 81 (124)
T ss_dssp TSCEEEECSSSSCCCHHHHHHHHHHHHHHHTT------------CCEEEEEECCSSTHHHHHHHHHHCCCC-----CEEE
T ss_pred CCEEEEEEcCCCccCHHHHHHHHHHHHHHhCC------------CceEEEEEcccccCCCHHHHHHHhCcc-----ceeE
Confidence 6999999999 67888888888887774321 237899999999889998888777622 1223
Q ss_pred EEEEeCChhHH---HHHHhcCCccccCCeeeecCHHHHHHHHH
Q 005994 562 IAISNLNHEVL---LTLSKSGVVDLIGKEWYFVRAHDAVQVCL 601 (666)
Q Consensus 562 v~la~~~~~v~---~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae 601 (666)
+.+.+.++-.+ +.+. ++...-.+-++|.|.+||+.|..
T Consensus 82 ~Al~g~s~~~r~ia~~~l--~~~~~~~pt~fF~te~eA~aWL~ 122 (124)
T 3bl4_A 82 IALLGSSPVDRVLANFFL--GINAVPCPTKFFTSERDALTWLA 122 (124)
T ss_dssp EEEECSSGGGHHHHHHHH--HHHCCSSCEEEESCHHHHHHHHT
T ss_pred EEEEcCCHHHHHHHHHHH--HhcCCCCCceeeCCHHHHHHHHH
Confidence 45666554322 2222 22233345579999999999975
No 17
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=84.40 E-value=3.1 Score=36.75 Aligned_cols=107 Identities=9% Similarity=0.033 Sum_probs=72.3
Q ss_pred CcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEE
Q 005994 484 HGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIA 563 (666)
Q Consensus 484 ~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~ 563 (666)
++++.+++.|.|.-...+.+...+++..+.+++ | + -.+.+|++.....+..++--=..+-....++=-++.
T Consensus 19 ~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~~~-----~---~-i~ll~~~~~f~G~~~~a~~~d~k~~~~h~~~~~RiA 89 (126)
T 2q3l_A 19 DFYLAFKAVGKLTHEDYEQMTPLLESALAGIKT-----P---E-IVALIDITELDGLSLHAAWDDLKLGLKHGKEFKRVA 89 (126)
T ss_dssp EEEEEEEEEEEECHHHHHHHHHHHHHHTTTCCS-----S---C-EEEEEEEEEEEEECHHHHHHHHHHHHHHGGGEEEEE
T ss_pred CCEEEEEEEeeECHHHHHHHHHHHHHHHHhCCC-----c---e-EEEEEEecCCCCCCHHHHHHHHHhhhhHHhcCCEEE
Confidence 578999999999988888888888877654321 1 1 357789888887775543321112123334455888
Q ss_pred EEeCChhHHHHHHhcCCccccCCeeeecCHHHHHHHH
Q 005994 564 ISNLNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVC 600 (666)
Q Consensus 564 la~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~a 600 (666)
+++-+..++...+..+.+- -++-++|.+.++|.+|.
T Consensus 90 vV~d~~W~~~~~~~~~~~~-~~evk~F~~~~~A~~Wl 125 (126)
T 2q3l_A 90 IIGQGELQEWATRVANWFT-PGEFKFFEDKRDALDWL 125 (126)
T ss_dssp EECCSHHHHHHHHHHHHHC-SSEEEEESCHHHHHHHH
T ss_pred EEcChHHHHHHHHHHhhcc-CCceeccCCHHHHHHHh
Confidence 8888888877776665542 23457889999999986
No 18
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=82.09 E-value=14 Score=39.62 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=51.1
Q ss_pred CChhhHHHHhhhhhhhhhccCCCCccc----ccch----hhhhhhcCCccc-hHHHHHHHHHHHHHHHhH-----HHHhh
Q 005994 321 LDSNQELFGLGVANILGSFFSAYPTTG----SFSR----SAVNHESGAKTG-LSGVITGIIMACALLFMT-----PLFEH 386 (666)
Q Consensus 321 ~d~nrEL~a~GlaNi~sglfGg~P~~~----s~sr----Sav~~~sGarT~-la~iv~g~~~ll~ll~l~-----~ll~~ 386 (666)
.|++..+++-|++.++-+++++.+.-. ++.- +++.. .|-..- -+.+++|++.+++.+++. .+..+
T Consensus 41 l~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~-~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~ 119 (429)
T 3qe7_A 41 INPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLP-LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVL 119 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGG-GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 577899999999999999886544321 1111 11111 121111 233444444444444422 58899
Q ss_pred hcHHHHHHHHHHHHhhcc
Q 005994 387 IPQCALAAIVVSAVMGLV 404 (666)
Q Consensus 387 IP~avLaaili~~~~~li 404 (666)
+|..+.+.++..+|+.+.
T Consensus 120 ~PpvviG~~i~~IGl~l~ 137 (429)
T 3qe7_A 120 FPPAAMGAIVAVIGLELA 137 (429)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCCeeeHHHHHHHHHHHH
Confidence 999999999988888876
No 19
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=58.23 E-value=25 Score=34.12 Aligned_cols=55 Identities=9% Similarity=0.133 Sum_probs=40.7
Q ss_pred ceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEE-----eCChhHHHHHHhcCCc
Q 005994 527 IYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAIS-----NLNHEVLLTLSKSGVV 581 (666)
Q Consensus 527 ~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la-----~~~~~v~~~L~~~Gl~ 581 (666)
++.|++|+.++-.-+......-.+.+++++++|++++++ .....+.+.++..|+.
T Consensus 6 ~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~ 65 (266)
T 3pdw_A 6 YKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIP 65 (266)
T ss_dssp CSEEEEECSSSTTCHHHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCC
T ss_pred CCEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 578999999885433333344567778899999999999 3345678888888884
No 20
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=54.94 E-value=19 Score=30.65 Aligned_cols=58 Identities=10% Similarity=0.048 Sum_probs=40.8
Q ss_pred ceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCC--hhHHHHHHhcCCcccc
Q 005994 527 IYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLN--HEVLLTLSKSGVVDLI 584 (666)
Q Consensus 527 ~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~--~~v~~~L~~~Gl~~~i 584 (666)
++.+++|+.++-.=+.....-..++.++++++|+++.++.-+ ..+.+.+++.|+.+.+
T Consensus 2 ~k~i~~D~DgtL~~~~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~~~f 61 (137)
T 2pr7_A 2 MRGLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETNGVV 61 (137)
T ss_dssp CCEEEECSTTTTSSCHHHHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHTTSS
T ss_pred CcEEEEeccceecCCCccCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChHhhc
Confidence 368999998866334445556778889999999999777443 3466777777765544
No 21
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=54.57 E-value=37 Score=33.17 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=49.4
Q ss_pred CcEEEEEeccceeec------------cHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHH
Q 005994 484 HGIVIVRIDAPIYFA------------NISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDL 551 (666)
Q Consensus 484 ~~i~Iirl~G~L~F~------------na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l 551 (666)
++|.++.++|++.=. +.+.+.+.++++..+ ++++.|||+... ..-|.++.+.+.+.
T Consensus 3 ~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d-----------~~v~~ivL~~~s-~Gg~~~~~~~i~~~ 70 (240)
T 3rst_A 3 SKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDD-----------KTVKGIVLKVNS-PGGGVYESAEIHKK 70 (240)
T ss_dssp CEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHC-----------TTEEEEEEEEEE-CCBCHHHHHHHHHH
T ss_pred CeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhC-----------CCcEEEEEEecC-CCCCHHHHHHHHHH
Confidence 467888888888654 356777777766432 357899998864 56788888888888
Q ss_pred HHHHHh-CCcEEE
Q 005994 552 YQEYKS-RDIQIA 563 (666)
Q Consensus 552 ~~~~~~-~gi~v~ 563 (666)
.+++++ .+..++
T Consensus 71 l~~~~~~~~kPVi 83 (240)
T 3rst_A 71 LEEIKKETKKPIY 83 (240)
T ss_dssp HHHHHHHHCCCEE
T ss_pred HHHHHHhCCCeEE
Confidence 888887 566664
No 22
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=41.66 E-value=89 Score=27.05 Aligned_cols=80 Identities=11% Similarity=0.227 Sum_probs=53.0
Q ss_pred cEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCC-ccCHHHHHHHHHHHHHHHhCCcEEE
Q 005994 485 GIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVT-YIDSSAVQALKDLYQEYKSRDIQIA 563 (666)
Q Consensus 485 ~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~-~IDsSgl~~L~~l~~~~~~~gi~v~ 563 (666)
+..++.+.. .+.+.+.++|.+.+.+.+.-- .-..||||++.+. .+| |..+.+.++++|..++
T Consensus 16 ~l~vl~l~~----~d~~~l~~~L~~ki~~aP~FF-------~~aPVVlDl~~l~~~~d------l~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 16 TLSVVHLHE----AEPEVIRQALEDKIAQAPAFL-------KHAPVVINVSGLESPVN------WPELHKIVTSTGLRII 78 (120)
T ss_dssp CCEEEEEES----CCHHHHHHHHHHHHHHSHHHH-------TTCEEEEEEEECCSSCC------HHHHHHHHHTTTCEEE
T ss_pred eEEEEEeCC----CCHHHHHHHHHHHHHhChHhh-------CCCcEEEEccccCChHH------HHHHHHHHHHcCCEEE
Confidence 345565533 566777888877665433100 1147999999885 233 6778888999998874
Q ss_pred -EEeCChh-HHHHHHhcCCc
Q 005994 564 -ISNLNHE-VLLTLSKSGVV 581 (666)
Q Consensus 564 -la~~~~~-v~~~L~~~Gl~ 581 (666)
+.+++++ .++..+..|+-
T Consensus 79 GV~g~~~~~~~~~a~~~GLp 98 (120)
T 3ghf_A 79 GVSGCKDASLKVEIDRMGLP 98 (120)
T ss_dssp EEESCCCHHHHHHHHHHTCC
T ss_pred EEeCCCcHHHHHHHHHCCCC
Confidence 5555645 78888888884
No 23
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=37.92 E-value=28 Score=33.83 Aligned_cols=55 Identities=13% Similarity=0.031 Sum_probs=39.5
Q ss_pred ceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeC-----ChhHHHHHHhcCCc
Q 005994 527 IYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNL-----NHEVLLTLSKSGVV 581 (666)
Q Consensus 527 ~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~-----~~~v~~~L~~~Gl~ 581 (666)
++.|++|+.++-.-+.....--.+..++++++|++++++.- ...+.+.++..|+.
T Consensus 8 ~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~ 67 (268)
T 3qgm_A 8 KKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLE 67 (268)
T ss_dssp CSEEEEECBTTTEETTEECHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHTTCC
T ss_pred CCEEEEcCcCcEECCCEeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCCCC
Confidence 57899999987543332223345677888899999999843 34677888888874
No 24
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=37.58 E-value=1.8e+02 Score=30.56 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=38.0
Q ss_pred cceEEEEEcCCCCcc-----C-------------HHHHHHHHHHHHHHHhCCcEEEEEeCC--hhHHHHHHh
Q 005994 526 RIYFVILEMAPVTYI-----D-------------SSAVQALKDLYQEYKSRDIQIAISNLN--HEVLLTLSK 577 (666)
Q Consensus 526 ~~~~VILDls~V~~I-----D-------------sSgl~~L~~l~~~~~~~gi~v~la~~~--~~v~~~L~~ 577 (666)
++|.+|+|+.++-.= | ...-.-+.++.+.++++|+++.++.-+ +.+.+.+++
T Consensus 221 ~iK~lv~DvDnTL~~G~l~~dG~~~~~~~dg~g~g~~ypgv~e~L~~Lk~~Gi~laI~Snn~~~~v~~~l~~ 292 (387)
T 3nvb_A 221 FKKCLILDLDNTIWGGVVGDDGWENIQVGHGLGIGKAFTEFQEWVKKLKNRGIIIAVCSKNNEGKAKEPFER 292 (387)
T ss_dssp CCCEEEECCBTTTBBSCHHHHCGGGSBCSSSSSTHHHHHHHHHHHHHHHHTTCEEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEcCCCCCCCCeecCCCceeEEeccCccccccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhh
Confidence 579999999875322 0 122345778899999999999888544 468888876
No 25
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=36.78 E-value=1.9 Score=38.23 Aligned_cols=104 Identities=15% Similarity=0.055 Sum_probs=68.1
Q ss_pred CcEEEEEeccceeeccHHHHHHHHHHhhhh--cccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHH--HHHHhCC
Q 005994 484 HGIVIVRIDAPIYFANISFLKDRLREYEVD--VDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLY--QEYKSRD 559 (666)
Q Consensus 484 ~~i~Iirl~G~L~F~na~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~--~~~~~~g 559 (666)
++++.+++.|.|.-...+.+...+++.++. ++ +++ +.+|++.....+..++- .++. ....++=
T Consensus 19 ~~vl~v~~~G~lt~eD~~~l~~~i~~~l~~~~~~----------~i~-lL~~~~~f~G~~~~A~~--~d~k~~~~h~~~~ 85 (127)
T 2ook_A 19 VFFVTLKAIGTLTHEDYLVITPMLEGALSQVDQP----------KVS-LFLDATELDGWDLRAAW--DDLKLGLKHKSEF 85 (127)
T ss_dssp EEEEEEEEEEEECHHHHHHHHHHHHHHHTTCCCS----------SCC-EEEEEEEEEEECTTCGG--GGCCCCCTTSCCE
T ss_pred CCEEEEEEeeeECHHHHHHHHHHHHHHHhhccCC----------CEE-EEEEccCCCCCCHHHHH--HHHHhhhhhHhcC
Confidence 578999999999988888888888877764 32 234 88888877777744322 1111 1111223
Q ss_pred cEEEEEeCChhHHHHHHhcCCccccCCeeeecCHHHHHHHHH
Q 005994 560 IQIAISNLNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCL 601 (666)
Q Consensus 560 i~v~la~~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae 601 (666)
-++.+++-++.++...+..+.+- -++-++|++-++|.+|..
T Consensus 86 ~RiAvV~d~~W~~~~~~~~~~~~-~~evk~F~~~~~A~~Wl~ 126 (127)
T 2ook_A 86 ERVAILGNKDWQEWAAKIGSWFI-AGEIKYFEDEDDALKWLR 126 (127)
T ss_dssp EEEEEECCSSCCTTTTTGGGGCC-EEEEEEESCHHHHHHHHH
T ss_pred CEEEEEcChHHHHHHHHHHhhCc-CCceEccCCHHHHHHHHh
Confidence 46777777776665555555441 134578998899998875
No 26
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=32.98 E-value=2e+02 Score=30.86 Aligned_cols=85 Identities=13% Similarity=0.115 Sum_probs=52.1
Q ss_pred ccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCc--c--CHHHHHHHHHHHHHHHhCCcEEEEEeC----Ch
Q 005994 498 ANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTY--I--DSSAVQALKDLYQEYKSRDIQIAISNL----NH 569 (666)
Q Consensus 498 ~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~--I--DsSgl~~L~~l~~~~~~~gi~v~la~~----~~ 569 (666)
++.+.+.+.++....+ +++..|++++..-.+ + |..+ +.+.+..++.+ .+..++.+.+ .+
T Consensus 351 a~~~~~~~al~~~l~d-----------p~vd~vlv~~~~~~~Gg~~~~~~a-~~i~~al~~~~-~~kPvvv~~~~g~~~~ 417 (457)
T 2csu_A 351 ARGEDYYRTAKLLLQD-----------PNVDMLIAICVVPTFAGMTLTEHA-EGIIRAVKEVN-NEKPVLAMFMAGYVSE 417 (457)
T ss_dssp CCHHHHHHHHHHHHHS-----------TTCSEEEEEEECCCSTTCCSSHHH-HHHHHHHHHHC-CCCCEEEEEECTTTTH
T ss_pred CCHHHHHHHHHHHhcC-----------CCCCEEEEEccccccccCCchhHH-HHHHHHHHHhc-CCCCEEEEeCCCcchH
Confidence 5677888888776642 235677777743222 3 3322 33444444433 5667766543 24
Q ss_pred hHHHHHHhcCCccccCCeeeecCHHHHHHHHHH
Q 005994 570 EVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCLQ 602 (666)
Q Consensus 570 ~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae~ 602 (666)
+.++.|+..|+ .+|.+.++|++.+..
T Consensus 418 ~~~~~L~~~Gi-------p~~~spe~Av~al~~ 443 (457)
T 2csu_A 418 KAKELLEKNGI-------PTYERPEDVASAAYA 443 (457)
T ss_dssp HHHHHHHTTTC-------CEESSHHHHHHHHHH
T ss_pred HHHHHHHhCCC-------CccCCHHHHHHHHHH
Confidence 57788888775 288999999987654
No 27
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=32.79 E-value=39 Score=32.78 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=39.1
Q ss_pred ceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEe---CC--hhHHHHHHhcCCc
Q 005994 527 IYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISN---LN--HEVLLTLSKSGVV 581 (666)
Q Consensus 527 ~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~---~~--~~v~~~L~~~Gl~ 581 (666)
++.|++|+.++-.-+...+..-.+..++++++|++++++. .+ ..+.+.++..|+.
T Consensus 5 ~kli~~DlDGTLl~~~~~i~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~~ 64 (264)
T 3epr_A 5 YKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVE 64 (264)
T ss_dssp CCEEEECCBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCC
T ss_pred CCEEEEeCCCceEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 5789999998844333333344467778888999999997 22 3577888888874
No 28
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=32.37 E-value=77 Score=30.01 Aligned_cols=62 Identities=15% Similarity=0.048 Sum_probs=44.1
Q ss_pred CCCCccCHHHHHHHHHHHHHHHhCC-cEEEEEeCChhHHHHHHh--------cCC------ccccCCeeeecCHHHHHHH
Q 005994 535 APVTYIDSSAVQALKDLYQEYKSRD-IQIAISNLNHEVLLTLSK--------SGV------VDLIGKEWYFVRAHDAVQV 599 (666)
Q Consensus 535 s~V~~IDsSgl~~L~~l~~~~~~~g-i~v~la~~~~~v~~~L~~--------~Gl------~~~i~~~~~f~s~~~Al~~ 599 (666)
++++.+| +.++.+.++.-| .+++++++....++.-++ .|- .|.+..-++++|++||+++
T Consensus 24 t~vtn~d------ihdiARamkt~Gl~~l~LV~P~~~~~~~a~~~~~~w~~~~Ga~~np~r~d~L~~a~vv~sL~eAl~~ 97 (192)
T 3dcm_X 24 TAVTNLD------VHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLED 97 (192)
T ss_dssp CCCCHHH------HHHHHHHHHHTTCSEEEEECCCHHHHHHHHHHHHHHHTSGGGGTCSSSHHHHTTEEEESSHHHHHHH
T ss_pred eeccccc------HHHHHHHHHhcCCceEEEECCccccHHHHHHHHHhhhcccCcccCcCHHHHhccCeEECCHHHHHHH
Confidence 4566666 567788888888 478999988654332222 333 3566777899999999999
Q ss_pred HHH
Q 005994 600 CLQ 602 (666)
Q Consensus 600 ae~ 602 (666)
|++
T Consensus 98 ~~~ 100 (192)
T 3dcm_X 98 IES 100 (192)
T ss_dssp HHH
T ss_pred HHh
Confidence 985
No 29
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=31.53 E-value=66 Score=27.46 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=36.8
Q ss_pred HHHHHHHhCCcEEEEEe-CChhHHHHHHhcCCccccCCeeeec-CHHHHHHHHHH
Q 005994 550 DLYQEYKSRDIQIAISN-LNHEVLLTLSKSGVVDLIGKEWYFV-RAHDAVQVCLQ 602 (666)
Q Consensus 550 ~l~~~~~~~gi~v~la~-~~~~v~~~L~~~Gl~~~i~~~~~f~-s~~~Al~~ae~ 602 (666)
.+.+.+.++|+++++|+ +.+...+.|+..|+.-..+ .-. +++||++...+
T Consensus 58 ~~~~~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~g~~i~eal~~~~~ 109 (120)
T 2wfb_A 58 NAAQVLAKSGAGVLLTGYVGPKAFQALQAAGIKVGQD---LEGLTVRQAVQRFLD 109 (120)
T ss_dssp HHHHHHHHHTEEEEECSCCCHHHHHHHHHTTCEEECC---CTTSBHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEECCCCHhHHHHHHHCCCEEEEc---CCCCcHHHHHHHHHc
Confidence 35566677999999995 6778999999999854332 124 78899887654
No 30
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=30.20 E-value=29 Score=32.66 Aligned_cols=75 Identities=19% Similarity=0.179 Sum_probs=47.9
Q ss_pred cceEEEEEcCCCC-----ccCHHHHHHHHHH-------HHHHHhCCcEEEEEeC--ChhHHHHHHhcCCccccCCeeeec
Q 005994 526 RIYFVILEMAPVT-----YIDSSAVQALKDL-------YQEYKSRDIQIAISNL--NHEVLLTLSKSGVVDLIGKEWYFV 591 (666)
Q Consensus 526 ~~~~VILDls~V~-----~IDsSgl~~L~~l-------~~~~~~~gi~v~la~~--~~~v~~~L~~~Gl~~~i~~~~~f~ 591 (666)
.++.|++|+.++- +.+..+ ..+.++ .+.++++|+++.++.- ...+.+.+++.|+.+.+.. ..
T Consensus 24 ~ik~vifD~DGtL~d~~~~~~~~~-~~~~~~~~~d~~~l~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~---~k 99 (195)
T 3n07_A 24 QIKLLICDVDGVFSDGLIYMGNQG-EELKTFHTRDGYGVKALMNAGIEIAIITGRRSQIVENRMKALGISLIYQG---QD 99 (195)
T ss_dssp TCCEEEECSTTTTSCSCCEECTTS-CEECCCCTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCCEEECS---CS
T ss_pred CCCEEEEcCCCCcCCCcEEEccCc-hhhheeecccHHHHHHHHHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeC---CC
Confidence 3578999998752 222221 223334 7888999999988854 4568889999998765432 13
Q ss_pred CHHHHHHHHHHhh
Q 005994 592 RAHDAVQVCLQHV 604 (666)
Q Consensus 592 s~~~Al~~ae~~l 604 (666)
+-.++++.+.+++
T Consensus 100 ~k~~~~~~~~~~~ 112 (195)
T 3n07_A 100 DKVQAYYDICQKL 112 (195)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHh
Confidence 4556666655443
No 31
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=28.35 E-value=1.1e+02 Score=29.63 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=45.2
Q ss_pred ccCcEEEEEeccceeeccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcE
Q 005994 482 TYHGIVIVRIDAPIYFANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQ 561 (666)
Q Consensus 482 ~~~~i~Iirl~G~L~F~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~ 561 (666)
..+.+.++.++|.+.-..++.+.+.++++..+ +.+.|+|.... +.=|.++. .++++.+++..+.
T Consensus 6 ~~~~V~vI~i~g~I~~~~~~~l~~~l~~a~~~------------~~~~Ivl~ins-pGG~v~~~---~~i~~~i~~~~~P 69 (230)
T 3viv_A 6 AKNIVYVAQIKGQITSYTYDQFDRYITIAEQD------------NAEAIIIELDT-PGGRADAM---MNIVQRIQQSKIP 69 (230)
T ss_dssp CCCEEEEEEEESCBCHHHHHHHHHHHHHHHHT------------TCSEEEEEEEB-SCEEHHHH---HHHHHHHHTCSSC
T ss_pred CCCeEEEEEEeCEECHHHHHHHHHHHHHHhcC------------CCCEEEEEEeC-CCcCHHHH---HHHHHHHHhCCCC
Confidence 34579999999999999999999999876531 34678887642 23333333 4566666666666
Q ss_pred EEE
Q 005994 562 IAI 564 (666)
Q Consensus 562 v~l 564 (666)
++-
T Consensus 70 Via 72 (230)
T 3viv_A 70 VII 72 (230)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 32
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=28.21 E-value=1.2e+02 Score=28.57 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=47.2
Q ss_pred cceEEEEEcCCCCccCHH--------------HHHHHHHHHHHHHhCCcEEEEEeC--ChhHHHHHHhcCCccccCCeee
Q 005994 526 RIYFVILEMAPVTYIDSS--------------AVQALKDLYQEYKSRDIQIAISNL--NHEVLLTLSKSGVVDLIGKEWY 589 (666)
Q Consensus 526 ~~~~VILDls~V~~IDsS--------------gl~~L~~l~~~~~~~gi~v~la~~--~~~v~~~L~~~Gl~~~i~~~~~ 589 (666)
.++.||+|+.++- +|+. ..+.+ +.+.++++|+++.++.- ...+.+.+++.|+.+.+...
T Consensus 48 ~ik~viFDlDGTL-~Ds~~~~~~~~~~~~~~~~~d~~--~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~~-- 122 (211)
T 3ij5_A 48 NIRLLICDVDGVM-SDGLIYMGNQGEELKAFNVRDGY--GIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQGQ-- 122 (211)
T ss_dssp TCSEEEECCTTTT-SSSEEEEETTSCEEEEEEHHHHH--HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCEEECSC--
T ss_pred CCCEEEEeCCCCE-ECCHHHHhhhhHHHHHhccchHH--HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCchhhccc--
Confidence 3578999998761 2211 01111 67889999999988854 45688999999997665421
Q ss_pred ecCHHHHHHHHHHh
Q 005994 590 FVRAHDAVQVCLQH 603 (666)
Q Consensus 590 f~s~~~Al~~ae~~ 603 (666)
.+-.++++.+.++
T Consensus 123 -k~K~~~l~~~~~~ 135 (211)
T 3ij5_A 123 -SDKLVAYHELLAT 135 (211)
T ss_dssp -SSHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHH
Confidence 4445666665544
No 33
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=27.59 E-value=1e+02 Score=26.39 Aligned_cols=51 Identities=8% Similarity=0.059 Sum_probs=37.9
Q ss_pred HHHHHHHhCCcEEEEEe-CChhHHHHHHhcCCccccCCeeeecCHHHHHHHHHHh
Q 005994 550 DLYQEYKSRDIQIAISN-LNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCLQH 603 (666)
Q Consensus 550 ~l~~~~~~~gi~v~la~-~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae~~ 603 (666)
.+.+.+.++|+++++|+ +.+...+.|+..|+.-..+ .-.+++||++...+.
T Consensus 56 ~~~~~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~~~i~eal~~~~~g 107 (124)
T 1eo1_A 56 RTAQIIANNGVKAVIASSPGPNAFEVLNELGIKIYRA---TGTSVEENLKLFTEG 107 (124)
T ss_dssp THHHHHHHTTCCEEEECCSSHHHHHHHHHHTCEEEEC---CSCCHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCEEEECCcCHHHHHHHHHCCCEEEEc---CCCCHHHHHHHHHhC
Confidence 35566778999999995 6778999999999854332 225789999876543
No 34
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=26.22 E-value=95 Score=26.46 Aligned_cols=50 Identities=16% Similarity=0.305 Sum_probs=37.6
Q ss_pred HHHHHHHhCCcEEEEEe-CChhHHHHHHhcCCccccCCeeeecCHHHHHHHHHH
Q 005994 550 DLYQEYKSRDIQIAISN-LNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCLQ 602 (666)
Q Consensus 550 ~l~~~~~~~gi~v~la~-~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae~ 602 (666)
.+.+.+.++|+++++|+ +.+...+.|+..|+.-..+ .-.+++||++...+
T Consensus 54 ~~~~~L~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~~~v~eal~~~~~ 104 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTYGIGRRAIEYFNSLGISVVTG---VYGRISDVIKAFIG 104 (121)
T ss_dssp HHHHHHHHTTCCEEECSBCCHHHHHHHHHTTCEEECS---BCSBHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECCCCHhHHHHHHHCCCEEEEC---CCCCHHHHHHHHHc
Confidence 45666778999999995 6788999999999854332 23578999987654
No 35
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=26.19 E-value=1.4e+02 Score=33.20 Aligned_cols=69 Identities=10% Similarity=0.123 Sum_probs=52.2
Q ss_pred cCcEEEEEeccceeecc-------HHHHHHHHHHhhhhcccccCCCCCcccceEEEEEcCCCCccCHHHHHHHHHHHHHH
Q 005994 483 YHGIVIVRIDAPIYFAN-------ISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEY 555 (666)
Q Consensus 483 ~~~i~Iirl~G~L~F~n-------a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDls~V~~IDsSgl~~L~~l~~~~ 555 (666)
.+++.++.++|++.-.. .+.+.+.++++..+ ++++.|||...+ ..-|..+.+.+.+..+++
T Consensus 300 ~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d-----------~~vkaVVL~i~s-pGG~~~~~~~i~~~i~~l 367 (593)
T 3bf0_A 300 GDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLD-----------PKVKAIVLRVNS-PGGSVTASEVIRAELAAA 367 (593)
T ss_dssp SCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHC-----------TTEEEEEEEEEE-EEECHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhC-----------CCCCEEEEEecC-CCCCHHHHHHHHHHHHHH
Confidence 35799999999987543 57888888876532 257899998864 456777777788888888
Q ss_pred HhCCcEEE
Q 005994 556 KSRDIQIA 563 (666)
Q Consensus 556 ~~~gi~v~ 563 (666)
++.++.++
T Consensus 368 ~~~~kPVi 375 (593)
T 3bf0_A 368 RAAGKPVV 375 (593)
T ss_dssp HHTTCCEE
T ss_pred HhCCCCEE
Confidence 88777665
No 36
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=25.88 E-value=52 Score=30.12 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCcEEEEEeCC-----hhHHHHHHhcCCcccc
Q 005994 547 ALKDLYQEYKSRDIQIAISNLN-----HEVLLTLSKSGVVDLI 584 (666)
Q Consensus 547 ~L~~l~~~~~~~gi~v~la~~~-----~~v~~~L~~~Gl~~~i 584 (666)
-..++.++++++|+++.++.-+ ..+.+.+++.|+.+.+
T Consensus 38 g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~f 80 (189)
T 3ib6_A 38 NAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYF 80 (189)
T ss_dssp THHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGE
T ss_pred CHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhhe
Confidence 3456788889999999777532 5688899999986654
No 37
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=24.35 E-value=62 Score=31.87 Aligned_cols=55 Identities=15% Similarity=0.261 Sum_probs=40.0
Q ss_pred cceEEEEEcCCCCccCHHH---------------------------HHHHHHHHHHHHhCCcEEEEEeCCh-----hHHH
Q 005994 526 RIYFVILEMAPVTYIDSSA---------------------------VQALKDLYQEYKSRDIQIAISNLNH-----EVLL 573 (666)
Q Consensus 526 ~~~~VILDls~V~~IDsSg---------------------------l~~L~~l~~~~~~~gi~v~la~~~~-----~v~~ 573 (666)
..+.||+|+.++- +|... ..-..++++.++++|+++.++.-++ .+.+
T Consensus 58 ~~kavifDlDGTL-ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~~~ 136 (258)
T 2i33_A 58 KKPAIVLDLDETV-LDNSPHQAMSVKTGKGYPYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDATIK 136 (258)
T ss_dssp SEEEEEECSBTTT-EECHHHHHHHHHHSCCTTTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHHHHH
T ss_pred CCCEEEEeCcccC-cCCHHHHHHHHhcccchHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCEEEEEcCCchhHHHHHHH
Confidence 5689999999864 45431 1224567889999999998885443 4677
Q ss_pred HHHhcCCc
Q 005994 574 TLSKSGVV 581 (666)
Q Consensus 574 ~L~~~Gl~ 581 (666)
.|++.|+.
T Consensus 137 ~L~~~Gl~ 144 (258)
T 2i33_A 137 NLERVGAP 144 (258)
T ss_dssp HHHHHTCS
T ss_pred HHHHcCCC
Confidence 88888886
No 38
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=23.27 E-value=88 Score=27.58 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=37.7
Q ss_pred HHHHHHHhCCcEEEEEe-CChhHHHHHHhcCCccccCCeeeecCHHHHHHHHHH
Q 005994 550 DLYQEYKSRDIQIAISN-LNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCLQ 602 (666)
Q Consensus 550 ~l~~~~~~~gi~v~la~-~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae~ 602 (666)
.+.+.+.++|+++++|+ +.+...+.|++.|+.-..+ .-.+++||++...+
T Consensus 67 ~~a~~L~~~gv~vVI~g~IG~~a~~~L~~~GI~v~~~---~~g~i~eal~~~~~ 117 (136)
T 1o13_A 67 AVPNFVKEKGAELVIVRGIGRRAIAAFEAMGVKVIKG---ASGTVEEVVNQYLS 117 (136)
T ss_dssp CHHHHHHHTTCSEEECSCCCHHHHHHHHHTTCEEECS---CCSBHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCEEEec---CCCCHHHHHHHHHh
Confidence 45666778999999995 6788999999999854432 12578999987643
No 39
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=22.96 E-value=35 Score=31.74 Aligned_cols=74 Identities=23% Similarity=0.237 Sum_probs=46.1
Q ss_pred cceEEEEEcCCCCc-----cCHHHHHHHHHH-------HHHHHhCCcEEEEEeC--ChhHHHHHHhcCCccccCCeeeec
Q 005994 526 RIYFVILEMAPVTY-----IDSSAVQALKDL-------YQEYKSRDIQIAISNL--NHEVLLTLSKSGVVDLIGKEWYFV 591 (666)
Q Consensus 526 ~~~~VILDls~V~~-----IDsSgl~~L~~l-------~~~~~~~gi~v~la~~--~~~v~~~L~~~Gl~~~i~~~~~f~ 591 (666)
+++.+++|+.++-. .+..+ ..+.++ .+.++++|+++.++.- ...+.+.+++.|+.+.+.. . .
T Consensus 18 ~ik~vifD~DGtL~~~~~~~~~~~-~~~~~~~~~d~~~l~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~--~-k 93 (191)
T 3n1u_A 18 KIKCLICDVDGVLSDGLLHIDNHG-NELKSFHVQDGMGLKLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKG--Q-V 93 (191)
T ss_dssp TCSEEEECSTTTTBCSCCEECTTC-CEECCBCHHHHHHHHHHHHTTCEEEEECSCCSHHHHHHHHHHTCCEEECS--C-S
T ss_pred cCCEEEEeCCCCCCCCceeecCCc-hhhhhccccChHHHHHHHHCCCeEEEEeCcChHHHHHHHHHcCCccceeC--C-C
Confidence 45799999987542 22211 122233 7888999999988853 4468889999998765431 1 2
Q ss_pred CHHHHHHHHHHh
Q 005994 592 RAHDAVQVCLQH 603 (666)
Q Consensus 592 s~~~Al~~ae~~ 603 (666)
+-.++++.+.++
T Consensus 94 pk~~~~~~~~~~ 105 (191)
T 3n1u_A 94 DKRSAYQHLKKT 105 (191)
T ss_dssp SCHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 234555555444
No 40
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}
Probab=22.91 E-value=84 Score=30.34 Aligned_cols=71 Identities=20% Similarity=0.183 Sum_probs=41.0
Q ss_pred eEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCC-----hhHHHHHHhcCCccccCCeeeecCHHHHHHHH
Q 005994 528 YFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLN-----HEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVC 600 (666)
Q Consensus 528 ~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~-----~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~a 600 (666)
+.+++|+.++-.-+...+..-.+..++++++|+++.++.-+ .++.+.|++.|+... .+.++.+...+.++.
T Consensus 2 k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l~~lg~~~~--~~~i~~~~~~~~~~l 77 (263)
T 1zjj_A 2 VAIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDVS--SSIIITSGLATRLYM 77 (263)
T ss_dssp EEEEEECBTTTEETTEECTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHHTTTCCCC--GGGEEEHHHHHHHHH
T ss_pred eEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCCC--hhhEEecHHHHHHHH
Confidence 57899998866533222223345667778889999888643 345666666777421 234444444333333
No 41
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=22.63 E-value=77 Score=26.82 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=37.1
Q ss_pred HHHHHHhCCcEEEEEe-CChhHHHHHHhcCCccccCCeeeecCHHHHHHHHHHh
Q 005994 551 LYQEYKSRDIQIAISN-LNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCLQH 603 (666)
Q Consensus 551 l~~~~~~~gi~v~la~-~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae~~ 603 (666)
+.+.+.++|+++++|+ +.+...+.|+..|+.-..+ .-.+++||++...+.
T Consensus 54 ~~~~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~~~i~eal~~~~~g 104 (116)
T 1rdu_A 54 VVQSLVSKGVEYLIASNVGRNAFETLKAAGVKVYRF---EGGTVQEAIDAFSEG 104 (116)
T ss_dssp HHHHHHTTTCCEEECSSCCSSCHHHHHTTTCEEECC---CSCBHHHHHHHHHTT
T ss_pred HHHHHHHcCCCEEEECCCCHhHHHHHHHCCCEEEEC---CCCCHHHHHHHHHhC
Confidence 5566778999999996 5678899999999854332 225789999876543
No 42
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=22.07 E-value=2.1e+02 Score=24.41 Aligned_cols=69 Identities=12% Similarity=0.107 Sum_probs=38.8
Q ss_pred ceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCCh--hHHHHHHhcC-CccccCCeeeecCHHHHHHHH
Q 005994 527 IYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLNH--EVLLTLSKSG-VVDLIGKEWYFVRAHDAVQVC 600 (666)
Q Consensus 527 ~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~~--~v~~~L~~~G-l~~~i~~~~~f~s~~~Al~~a 600 (666)
...|++|..- . |.+|.+.+..+.+. ..+..+++..-.. +......+.| ..+.+.+..-...+.++++.+
T Consensus 59 ~dlvi~D~~l-~--~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~ 130 (153)
T 3hv2_A 59 VDLVISAAHL-P--QMDGPTLLARIHQQ--YPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQA 130 (153)
T ss_dssp CSEEEEESCC-S--SSCHHHHHHHHHHH--CTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHH
T ss_pred CCEEEEeCCC-C--cCcHHHHHHHHHhH--CCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHH
Confidence 3589999863 3 55688877777663 3466776665433 3333334455 766665433333344444444
No 43
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=21.90 E-value=1.1e+02 Score=27.03 Aligned_cols=49 Identities=8% Similarity=0.030 Sum_probs=36.4
Q ss_pred HHHHHHHhCCcEEEEEe-CChhHHHHHHhcCCccccCCeeeecCHHHHHHHHHH
Q 005994 550 DLYQEYKSRDIQIAISN-LNHEVLLTLSKSGVVDLIGKEWYFVRAHDAVQVCLQ 602 (666)
Q Consensus 550 ~l~~~~~~~gi~v~la~-~~~~v~~~L~~~Gl~~~i~~~~~f~s~~~Al~~ae~ 602 (666)
.+.+.+.++|+++++|+ +.+..++.|+. |+.-..+. -.+++||++...+
T Consensus 70 ~~~~~L~~~gv~~VI~g~iG~~a~~~L~~-GI~v~~~~---~~~veeal~~~~~ 119 (136)
T 2re2_A 70 FMLKSALDHGANALVLSEIGSPGFNFIKN-KMDVYIVP---EMPVADALKLILE 119 (136)
T ss_dssp HHHHHHHHTTCSEEEESCCBHHHHHHHTT-TSEEEECC---SCBHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECCCCHhHHHHHHC-CCEEEEcC---CCCHHHHHHHHHh
Confidence 45666777899999996 67788999999 98543331 2578999987754
No 44
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=21.82 E-value=61 Score=30.35 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=39.0
Q ss_pred ceEEEEEcCCCCccCH---------HHHHHHHHHHHHHHhCCcEEEEEeCCh-----------------hHHHHHHhcCC
Q 005994 527 IYFVILEMAPVTYIDS---------SAVQALKDLYQEYKSRDIQIAISNLNH-----------------EVLLTLSKSGV 580 (666)
Q Consensus 527 ~~~VILDls~V~~IDs---------Sgl~~L~~l~~~~~~~gi~v~la~~~~-----------------~v~~~L~~~Gl 580 (666)
.+.+++|+.++-.-+. .-..-..++.++++++|+++.++.-+. .+.+.|++.|+
T Consensus 25 ~k~v~~D~DGTL~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 104 (211)
T 2gmw_A 25 VPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDV 104 (211)
T ss_dssp BCEEEECSBTTTBCCCSSCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEcCCCCeECCCCcccCcccCcCCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcCC
Confidence 5789999988655442 223345677888999999997775443 46778888887
Q ss_pred c
Q 005994 581 V 581 (666)
Q Consensus 581 ~ 581 (666)
.
T Consensus 105 ~ 105 (211)
T 2gmw_A 105 D 105 (211)
T ss_dssp C
T ss_pred c
Confidence 3
No 45
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}
Probab=21.34 E-value=82 Score=30.73 Aligned_cols=56 Identities=9% Similarity=0.130 Sum_probs=38.8
Q ss_pred cceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeC-----ChhHHHHHHhcCCc
Q 005994 526 RIYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNL-----NHEVLLTLSKSGVV 581 (666)
Q Consensus 526 ~~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~-----~~~v~~~L~~~Gl~ 581 (666)
.++.+++|+.++-.-+.....--.+..++++++|+++.++.- ...+.+.+++.|+.
T Consensus 13 ~~k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~~~~~l~~lg~~ 73 (284)
T 2hx1_A 13 KYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGLF 73 (284)
T ss_dssp GCSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCT
T ss_pred cCCEEEEcCcCCcCcCCeeChhHHHHHHHHHHCCCEEEEEeCCCCcCHHHHHHHHHHCCcC
Confidence 357899999987654332222233566778889999998863 24677888888875
No 46
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=20.82 E-value=1.3e+02 Score=25.39 Aligned_cols=74 Identities=8% Similarity=0.088 Sum_probs=41.7
Q ss_pred ceEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeC--ChhHHHHHHhcCCccccCCee-eecCHHHHHHHHHHh
Q 005994 527 IYFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNL--NHEVLLTLSKSGVVDLIGKEW-YFVRAHDAVQVCLQH 603 (666)
Q Consensus 527 ~~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~--~~~v~~~L~~~Gl~~~i~~~~-~f~s~~~Al~~ae~~ 603 (666)
...|++|..- . |..|.+.+..+.+.....+..+++..- +.+......+.|..+.+.+.. -...+.++++.+.++
T Consensus 52 ~dlii~D~~l-~--~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 52 YDLIILDIGL-P--IANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp CSEEEECTTC-G--GGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-C--CCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHH
Confidence 3589999863 3 456777666665532334666666553 344555555678777664432 233344555544433
No 47
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=20.23 E-value=1.4e+02 Score=24.89 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCccCHHHHHHHHHHHHHHHhCCcEEEEEeCChhHHHH---HHhcCCccccCC
Q 005994 528 YFVILEMAPVTYIDSSAVQALKDLYQEYKSRDIQIAISNLNHEVLLT---LSKSGVVDLIGK 586 (666)
Q Consensus 528 ~~VILDls~V~~IDsSgl~~L~~l~~~~~~~gi~v~la~~~~~v~~~---L~~~Gl~~~i~~ 586 (666)
..|++|.. .. |.+|.+.+..+.+.....+..+++..-..+.... ..+.|..+.+.+
T Consensus 52 dlvi~d~~-l~--~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~k 110 (140)
T 3grc_A 52 AAMTVDLN-LP--DQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEK 110 (140)
T ss_dssp SEEEECSC-CS--SSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECS
T ss_pred CEEEEeCC-CC--CCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeC
Confidence 58999985 33 4567887777766445567888888766654332 334566665543
No 48
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=20.03 E-value=4.2e+02 Score=27.72 Aligned_cols=87 Identities=13% Similarity=0.164 Sum_probs=52.7
Q ss_pred ccHHHHHHHHHHhhhhcccccCCCCCcccceEEEEEc-CCCCccCHHHHHHHHHHHHHHHhCCcE--EEEEeCChh-HHH
Q 005994 498 ANISFLKDRLREYEVDVDRSTRRGPEVERIYFVILEM-APVTYIDSSAVQALKDLYQEYKSRDIQ--IAISNLNHE-VLL 573 (666)
Q Consensus 498 ~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~VILDl-s~V~~IDsSgl~~L~~l~~~~~~~gi~--v~la~~~~~-v~~ 573 (666)
++.+++.+.++-...+ ++++.+++.. .++...|.-+ +.+.+..+++. .++. +.+.+.+.+ -++
T Consensus 300 a~~e~~~~al~~il~d-----------~~v~~ilvni~ggi~~~d~vA-~gii~a~~~~~-~~~Pivvrl~G~n~~~g~~ 366 (395)
T 2fp4_B 300 VKESQVYQAFKLLTAD-----------PKVEAILVNIFGGIVNCAIIA-NGITKACRELE-LKVPLVVRLEGTNVHEAQN 366 (395)
T ss_dssp CCHHHHHHHHHHHHHC-----------TTCCEEEEEEEESSSCHHHHH-HHHHHHHHHHT-CCSCEEEEEEETTHHHHHH
T ss_pred CCHHHHHHHHHHHhCC-----------CCCCEEEEEecCCccCcHHHH-HHHHHHHHhcC-CCCeEEEEcCCCCHHHHHH
Confidence 4567777766655432 2345666654 6777777765 44444444442 3444 455666654 778
Q ss_pred HHHhcCCccccCCeeeecCHHHHHHHHHH
Q 005994 574 TLSKSGVVDLIGKEWYFVRAHDAVQVCLQ 602 (666)
Q Consensus 574 ~L~~~Gl~~~i~~~~~f~s~~~Al~~ae~ 602 (666)
.|+.+|+ + -..+++.++|.+.+-+
T Consensus 367 ~L~~~gl----~-~~~~~~~~~Aa~~~v~ 390 (395)
T 2fp4_B 367 ILTNSGL----P-ITSAVDLEDAAKKAVA 390 (395)
T ss_dssp HHHHTCS----C-CEECSSHHHHHHHHHH
T ss_pred HHHHCCC----c-eEeCCCHHHHHHHHHH
Confidence 8888885 1 1244999999987653
Done!