Query 005997
Match_columns 665
No_of_seqs 230 out of 451
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 13:14:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kas_A Transferrin receptor pr 99.0 1.2E-10 4.3E-15 133.6 4.6 109 1-109 367-488 (640)
2 3fed_A Glutamate carboxypeptid 98.8 4.3E-09 1.5E-13 122.0 7.9 108 2-109 413-551 (707)
3 4fuu_A Leucine aminopeptidase; 98.4 3.1E-08 1.1E-12 104.1 -0.7 96 2-100 204-306 (309)
4 3iib_A Peptidase M28; YP_92679 98.0 7.2E-06 2.5E-10 90.4 7.4 98 4-108 334-436 (444)
5 4f9u_A CG32412; alpha/beta hyd 97.9 1.7E-05 6E-10 82.9 7.2 58 48-106 244-301 (312)
6 1tkj_A Aminopeptidase, SGAP; d 97.6 4.5E-05 1.5E-09 78.8 5.7 64 45-109 200-282 (284)
7 3tc8_A Leucine aminopeptidase; 97.5 5.2E-05 1.8E-09 79.7 3.8 57 42-100 245-307 (309)
8 4fai_A CG5976, isoform B; alph 97.4 9.5E-05 3.3E-09 78.3 4.7 54 47-101 268-321 (330)
9 3gux_A Putative Zn-dependent e 97.2 0.00014 4.9E-09 76.6 3.4 92 2-100 206-311 (314)
10 2ek8_A Aminopeptidase; metallo 97.2 0.00054 1.8E-08 74.7 7.8 64 45-109 343-406 (421)
11 2afw_A Glutaminyl-peptide cycl 97.1 0.00068 2.3E-08 71.5 7.7 54 47-101 272-325 (329)
12 1rtq_A Bacterial leucyl aminop 96.3 0.0032 1.1E-07 65.2 5.4 63 46-109 226-293 (299)
13 3pb6_X Glutaminyl-peptide cycl 96.2 0.0037 1.3E-07 66.3 5.5 55 46-101 272-326 (330)
14 3k9t_A Putative peptidase; str 94.4 0.032 1.1E-06 60.6 5.1 61 44-105 293-356 (435)
15 2l8s_A Integrin alpha-1; trans 54.8 17 0.0006 28.1 4.7 35 362-398 6-40 (54)
16 2knc_A Integrin alpha-IIB; tra 37.4 52 0.0018 25.5 4.9 35 362-398 9-43 (54)
17 2lx0_A Membrane fusion protein 33.7 39 0.0013 22.6 3.1 19 370-388 7-25 (32)
18 3t68_A Succinyl-diaminopimelat 28.3 24 0.00083 35.1 2.2 53 46-104 216-268 (268)
No 1
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=99.01 E-value=1.2e-10 Score=133.59 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=89.0
Q ss_pred CCCCCcceeEecCC-ChhHHHHHHhhCCCCccc-chHHH-HHh--CCCCCCCCcchhhhhcCCCceeeeeeecC-CCc-c
Q 005997 1 MGIGGKSGLFQAGP-HPWAVENFAAAAKYPSGQ-VTAQD-LFA--SGAITSATDFQVYKEVAGLSGLDFAYTDK-SAV-Y 73 (665)
Q Consensus 1 ~GsgG~~~lFqtg~-~~~lv~~y~~~a~~P~a~-sla~~-if~--~g~ipsdTDf~vf~~~g~i~GlD~A~~~~-~~~-Y 73 (665)
+|+|++.+.+|++| ..++++.+++.++||+++ ++.++ .++ .+.+|++|||++|.+++||||+|++|..+ +|. |
T Consensus 367 ~~~G~~~l~~~~~p~l~~l~~~~~~~v~~P~~~~tl~~~~~w~~~~~~~~~~sD~~~F~~~~GIP~~~~~~~~~~~y~~y 446 (640)
T 3kas_A 367 AVLGTSNFKVSASPLLYTLIEKTMQNVKHPVTGQFLYQDSNWASKVEKLTLDNAAFPFLAYSGIPAVSFCFCEDTDYPYL 446 (640)
T ss_dssp CBSCSSEEEEEECGGGHHHHHHHHTTCBCTTTCSBSCCCTTGGGGCCCCCTTSTHHHHHHHHCCCEEEEEEECSSCCTTT
T ss_pred CccCCCceEEEeCHHHHHHHHHHHHhCCCCCCCCceecccccccccCCCCCCcchHHHHHhCCCCeeeccccCCCCCCCc
Confidence 36777799999888 578999999988999874 34332 343 57899999999999999999999999987 564 9
Q ss_pred cCCCCCcCCCCc------chHHHHHHHHHHHHHHhhcCCCCC
Q 005997 74 HTKNDKLDLLKP------GSLQHLGENMLAFLLQAASSTSLP 109 (665)
Q Consensus 74 HT~~D~~~~i~~------~slQh~G~n~L~l~~~l~~~~~l~ 109 (665)
||++|+++++++ ...+.+++.+-.++.+|++++-++
T Consensus 447 HT~~Dt~~~i~~~~~~~~~~h~~~a~~~g~l~l~La~~~~lP 488 (640)
T 3kas_A 447 GTTMDTYKELIERIPELNKVARAAAEVAGQFVIKLTHDVELN 488 (640)
T ss_dssp TSTTCCHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCccccHHHHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999998764 346677888888899999988765
No 2
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.81 E-value=4.3e-09 Score=122.04 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=85.5
Q ss_pred CCCCcceeEecCC-ChhHHHHHHhhCCCCcc----cchHHHHHhC------------CCCCCCCcchhhhhcCCCceeee
Q 005997 2 GIGGKSGLFQAGP-HPWAVENFAAAAKYPSG----QVTAQDLFAS------------GAITSATDFQVYKEVAGLSGLDF 64 (665)
Q Consensus 2 GsgG~~~lFqtg~-~~~lv~~y~~~a~~P~a----~sla~~if~~------------g~ipsdTDf~vf~~~g~i~GlD~ 64 (665)
|+|++.+.+|++| ..++++.+++.+++|.+ .++.++-++. +.+.++|||++|.+++|||++|+
T Consensus 413 ~~g~~~~~~~~sp~l~~~i~~~~~~v~~P~~~~~~~tly~~w~~~~~~~~~~~~p~i~~lgsgSD~~~F~~~~GIPs~~~ 492 (707)
T 3fed_A 413 IEGNYTLRVDCTPLLYQLVYKLTKEIPSPDDGFESKSLYESWLEKDPSPENKNLPRINKLGSGSDFEAYFQRLGIASGRA 492 (707)
T ss_dssp BSCSSEEEEEECGGGHHHHHHHHTTSBCCSTTCTTSBHHHHHHHHSEETTEEEEECEECCCSSSTTHHHHHTTCCCEEEE
T ss_pred ccCCceEEEecCHHHHHHHHHHHhcCCCCccccccccHHHHHHhhcccccccCCcccccCCCCCChHHHHHhCCcceecc
Confidence 5677799999888 68999999999999986 6776666651 23569999999999999999999
Q ss_pred eeecC-------CC-cccCCCCCcCCCCc----c--hHHHHHHHHHHHHHHhhcCCCCC
Q 005997 65 AYTDK-------SA-VYHTKNDKLDLLKP----G--SLQHLGENMLAFLLQAASSTSLP 109 (665)
Q Consensus 65 A~~~~-------~~-~YHT~~D~~~~i~~----~--slQh~G~n~L~l~~~l~~~~~l~ 109 (665)
+|..+ .| +|||.+||++++++ + .-+.+++-.-.++.+||+++-++
T Consensus 493 ~f~~~~~~~~~~~y~~YHT~~Dt~~~~~~~~Dp~f~~h~~~a~~~g~l~l~La~~~vlP 551 (707)
T 3fed_A 493 RYTKNKKTDKYSSYPVYHTIYETFELVEKFYDPTFKKQLSVAQLRGALVYELVDSKIIP 551 (707)
T ss_dssp EEECCTTTCCSSSCTTTTSTTCCHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred ccccCccccccCCCCCcCCCcccHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCccCC
Confidence 99966 56 79999999987644 3 22335667777888999887654
No 3
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}
Probab=98.39 E-value=3.1e-08 Score=104.06 Aligned_cols=96 Identities=19% Similarity=0.218 Sum_probs=63.2
Q ss_pred CCCCcceeEecCCC---hhHHHHHHhhCCCCcccchHHHHHhCCCCCCCCcchhhhhcCCCceeeeeeecCC----Cccc
Q 005997 2 GIGGKSGLFQAGPH---PWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKS----AVYH 74 (665)
Q Consensus 2 GsgG~~~lFqtg~~---~~lv~~y~~~a~~P~a~sla~~if~~g~ipsdTDf~vf~~~g~i~GlD~A~~~~~----~~YH 74 (665)
|++++..+++.+.. +.+.+...+.++..-... ....+.|..++ .|+..|.+++|||++|++....+ .+||
T Consensus 204 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-sDh~~F~~~~GIP~l~~~~~~~~~~~~~~yH 280 (309)
T 4fuu_A 204 GGENSVFLKEGYSEEFAPDINKKVWKAAKKAGYGK--TFIDERGDTIT-DDHLFINRLARIKTIDIIPNDPETGFPPTWH 280 (309)
T ss_dssp CBTTCCEEECHHHHHHCHHHHHHHHHHHHHTTCTT--TEEEEECCCCC-CHHHHHHHHTCCCEEEECBC----CCCTTTT
T ss_pred CCCCCceEeecCchhhhHHHHHHHHHHHHhcCCcc--cccccCCCCCC-CChHHHHhcCCCCEEEEeccCCCCCCCCCCC
Confidence 66677666663322 345554443321110000 01123444444 49999998899999999876543 3799
Q ss_pred CCCCCcCCCCcchHHHHHHHHHHHHH
Q 005997 75 TKNDKLDLLKPGSLQHLGENMLAFLL 100 (665)
Q Consensus 75 T~~D~~~~i~~~slQh~G~n~L~l~~ 100 (665)
|++||+|+|++++|||+|+++|+++-
T Consensus 281 T~~Dt~d~id~~~L~~vg~~vl~~ly 306 (309)
T 4fuu_A 281 TIHDNMDHIDKNTLKAVGQTVLEVIY 306 (309)
T ss_dssp STTCSGGGBCHHHHHHHHHHHHHHHH
T ss_pred CcccchhhCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999874
No 4
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=97.99 E-value=7.2e-06 Score=90.38 Aligned_cols=98 Identities=19% Similarity=0.181 Sum_probs=74.2
Q ss_pred CCcceeE--ecCC-ChhHHHHHHhhCCCCcccchHHHHHhCCCCCCCCcchhhhhcCCCceeeeeeecCC--CcccCCCC
Q 005997 4 GGKSGLF--QAGP-HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKS--AVYHTKND 78 (665)
Q Consensus 4 gG~~~lF--qtg~-~~~lv~~y~~~a~~P~a~sla~~if~~g~ipsdTDf~vf~~~g~i~GlD~A~~~~~--~~YHT~~D 78 (665)
||+...| +.++ .+++++.+.+.. +|.+... +..-..+.||+..|.+ .|+|++++...... ..|||+.|
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-----~~~~~~~~SD~~~f~~-~GiP~~~l~~~~~~~~~~yHt~~D 406 (444)
T 3iib_A 334 AGPIYQIDWRVADTAHSPVINAMKVA-EPLGVAA-----GNNKASGGPDVSMLPA-LGVPVASLRQDGSDYFDYHHTPND 406 (444)
T ss_dssp TCCEEEEEEECCHHHHHHHHHHGGGG-GGGTCEE-----CCSCCCCCGGGTTSGG-GTCCEEEEEECCTTGGGTTTSTTC
T ss_pred CCcceEEEeecChhhHHHHHHHHHHH-hhcCCcc-----ccCCCCCCCccHHHHH-CCCCEEEeecCCCcCCCCCCCCcc
Confidence 3455455 4333 467888888754 2333221 1233678999999998 89999999875432 37999999
Q ss_pred CcCCCCcchHHHHHHHHHHHHHHhhcCCCC
Q 005997 79 KLDLLKPGSLQHLGENMLAFLLQAASSTSL 108 (665)
Q Consensus 79 ~~~~i~~~slQh~G~n~L~l~~~l~~~~~l 108 (665)
|++++++++||+.++.+..++..+|++++.
T Consensus 407 t~d~id~~~l~~~~~~~~~~v~~lA~~~~~ 436 (444)
T 3iib_A 407 TLDKINPEALAQNVAVYAQFAWVMANSKVE 436 (444)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999998864
No 5
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*
Probab=97.86 E-value=1.7e-05 Score=82.94 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=52.1
Q ss_pred CcchhhhhcCCCceeeeeeecCCCcccCCCCCcCCCCcchHHHHHHHHHHHHHHhhcCC
Q 005997 48 TDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASST 106 (665)
Q Consensus 48 TDf~vf~~~g~i~GlD~A~~~~~~~YHT~~D~~~~i~~~slQh~G~n~L~l~~~l~~~~ 106 (665)
.|...|.+ .|||++|++......+|||+.||+|+|++++||+.|..+++++.+.....
T Consensus 244 SDH~pF~~-~GIP~l~~~~~~~~~~yHt~~Dt~d~id~~~l~~~~~i~~~fv~e~l~~~ 301 (312)
T 4f9u_A 244 DDHRPFLD-ENVPVLHLVATPFPDVWHTPRDNAANLHWPSIRNFNRVFRNFVYQYLKRH 301 (312)
T ss_dssp CTTHHHHT-TTCCEEEEECSSCCTTTTSTTCSGGGCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHH-CCCCEEEEECCCCCCCCCCCccChhhCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 58899998 89999999999888899999999999999999999999999887655433
No 6
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A
Probab=97.62 E-value=4.5e-05 Score=78.80 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=53.0
Q ss_pred CCCCcchhhhhcCCCceeeeeeec-------------------CCCcccCCCCCcCCCCcchHHHHHHHHHHHHHHhhcC
Q 005997 45 TSATDFQVYKEVAGLSGLDFAYTD-------------------KSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 105 (665)
Q Consensus 45 psdTDf~vf~~~g~i~GlD~A~~~-------------------~~~~YHT~~D~~~~i~~~slQh~G~n~L~l~~~l~~~ 105 (665)
..+||...|.+ .|+|.++++.-. ....|||+.|+++++++..+|+.++.+..+++.|+++
T Consensus 200 ~~~sD~~~f~~-~Gip~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~yHt~~D~~~~id~~~l~~~~~~~~~~~~~la~~ 278 (284)
T 1tkj_A 200 DGRSDHAPFKN-VGVPVGGLFTGAGYTKSAAQAQKWGGTAGQAFDRCYHSSCDSLSNINDTALDRNSDAAAHAIWTLSSG 278 (284)
T ss_dssp TTCSTHHHHHH-TTCCEEEEECCCSSBCCHHHHHHHCSCTTSBSCTTTTSTTCSTTSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCchHHHHH-CCCCEEEeecCcccccccchhhccccccccCCCCCCCCCcCChhhCCHHHHHHHHHHHHHHHHHHhcC
Confidence 36799999998 899999998752 1467999999999999999999999999999999998
Q ss_pred CCCC
Q 005997 106 TSLP 109 (665)
Q Consensus 106 ~~l~ 109 (665)
++++
T Consensus 279 ~~~P 282 (284)
T 1tkj_A 279 TGEP 282 (284)
T ss_dssp ----
T ss_pred CCCC
Confidence 8654
No 7
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}
Probab=97.47 E-value=5.2e-05 Score=79.72 Aligned_cols=57 Identities=23% Similarity=0.398 Sum_probs=49.5
Q ss_pred CCCCCCCcchhhhhcCCCceeeeeee------cCCCcccCCCCCcCCCCcchHHHHHHHHHHHHH
Q 005997 42 GAITSATDFQVYKEVAGLSGLDFAYT------DKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLL 100 (665)
Q Consensus 42 g~ipsdTDf~vf~~~g~i~GlD~A~~------~~~~~YHT~~D~~~~i~~~slQh~G~n~L~l~~ 100 (665)
|.++ +|...|.+++|||+++++.. ..+.+|||+.|++|+|++++||+.|+++++++-
T Consensus 245 g~~~--sDh~~f~~~~GiP~~~li~~~~~~~~~~~~~~Ht~~Dt~d~id~~~l~~~~~~~~~~vy 307 (309)
T 3tc8_A 245 GAIT--DDHQYVISGRNIPSIDIINYDPESKTGFASYWHTQKDNMENIDRETLKAAGQTVLEVIY 307 (309)
T ss_dssp CCCC--CHHHHHHHHHCCCEEEEEBCCTTSSSSSCTTTTSTTCSGGGBCHHHHHHHHHHHHHHHH
T ss_pred CCCC--CccHHHHhcCCCCEEEEecccCcccCCCCCCCCCCcCChhhCCHHHHHHHHHHHHHHHh
Confidence 4454 56799999889999999876 346899999999999999999999999999874
No 8
>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*
Probab=97.39 E-value=9.5e-05 Score=78.29 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=48.0
Q ss_pred CCcchhhhhcCCCceeeeeeecCCCcccCCCCCcCCCCcchHHHHHHHHHHHHHH
Q 005997 47 ATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQ 101 (665)
Q Consensus 47 dTDf~vf~~~g~i~GlD~A~~~~~~~YHT~~D~~~~i~~~slQh~G~n~L~l~~~ 101 (665)
.+|...|.+ .|||+++++....+.+|||+.||+|+|+++++++++.-+-+++.+
T Consensus 268 ~SDH~pF~~-~GIP~l~~i~~~~~~~yHT~~Dt~d~iD~~tl~~~~~ii~~Fv~E 321 (330)
T 4fai_A 268 EDDHIPFLR-RNVPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFALE 321 (330)
T ss_dssp CSTTHHHHT-TTCCEEEECCSSCCTTTTSTTSSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHH-CCCCEEEEECCCCCCCCCCCcCChhhCCHHHHHHHHHHHHHHHHH
Confidence 369999999 899999999888888999999999999999999999877776653
No 9
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=97.20 E-value=0.00014 Score=76.55 Aligned_cols=92 Identities=17% Similarity=0.317 Sum_probs=52.4
Q ss_pred CCCCcceeEecCC-C---hhHHHHHHhhCCCCcccchHHHHHh---CCCCCCCCcchhhhhcCCCceeeeeeecC-----
Q 005997 2 GIGGKSGLFQAGP-H---PWAVENFAAAAKYPSGQVTAQDLFA---SGAITSATDFQVYKEVAGLSGLDFAYTDK----- 69 (665)
Q Consensus 2 GsgG~~~lFqtg~-~---~~lv~~y~~~a~~P~a~sla~~if~---~g~ipsdTDf~vf~~~g~i~GlD~A~~~~----- 69 (665)
|.+++. +++.+. . +++++.+.++++. .+. ...|+ .|.++ +|...|.+..|||+++++....
T Consensus 206 G~~~~~-~~~~g~~~~~~~~l~~~~~~~~~~-~g~---~~~f~~~~~~~~~--sDh~pF~~~~GiP~l~~i~~~~~~~~~ 278 (314)
T 3gux_A 206 GGKDAT-FYYEGYSARTARSEMKKIWKKAHE-LGY---GKYFVKEDGGETV--DDHIYVNKLARIPCVDIINYDAGNPQS 278 (314)
T ss_dssp CBTTCC-EEECTTHHHHCHHHHHHHHHHHHH-HTC---TTTEEEEECCCCC--CHHHHHHHHSCCCEEEEEBCC------
T ss_pred CCCCCc-eeeeccccccHHHHHHHHHHHHHH-cCC---ccccccccCCCCC--CccHHHHhcCCCceEEEeccccccccc
Confidence 566655 455554 2 4667776554311 000 01122 24444 5679999878999999987642
Q ss_pred --CCcccCCCCCcCCCCcchHHHHHHHHHHHHH
Q 005997 70 --SAVYHTKNDKLDLLKPGSLQHLGENMLAFLL 100 (665)
Q Consensus 70 --~~~YHT~~D~~~~i~~~slQh~G~n~L~l~~ 100 (665)
+.+|||+.|++|+|++.+||+.|+++++++-
T Consensus 279 ~f~~~~Ht~~Dt~d~id~~~l~~~~~~~~~~~y 311 (314)
T 3gux_A 279 SFGSFWHTVNDTMENIDRNTLKAVGQTVMDVIY 311 (314)
T ss_dssp --------------CBCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCcchhCCHHHHHHHHHHHHHHHh
Confidence 3789999999999999999999999998874
No 10
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=97.18 E-value=0.00054 Score=74.68 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=57.0
Q ss_pred CCCCcchhhhhcCCCceeeeeeecCCCcccCCCCCcCCCCcchHHHHHHHHHHHHHHhhcCCCCC
Q 005997 45 TSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLP 109 (665)
Q Consensus 45 psdTDf~vf~~~g~i~GlD~A~~~~~~~YHT~~D~~~~i~~~slQh~G~n~L~l~~~l~~~~~l~ 109 (665)
.+.||+..|.+ .|||++.+........|||++|+++++++..++++++.+..++..+++++.++
T Consensus 343 ~~~SD~~~F~~-~GIP~~~~~~~~~~~~yHt~~Dt~~~i~~~~l~~~~~~~~~~~~~la~~~~~p 406 (421)
T 2ek8_A 343 EGRSDHESFHA-LGIPAALFIHAPVEPWYHTPNDTLDKISKEKLDNVADIVGSAVYQAARPGELV 406 (421)
T ss_dssp CCSSTHHHHHT-TTCCEEEEEEESCCTTTTSTTCCGGGBCHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CCCCccHHHHH-CCCCEEEEECCcCCCCCCCcccchhhCCHHHHHHHHHHHHHHHHHHhCCCccC
Confidence 46799999998 99999987755445689999999999999999999999999999999988765
No 11
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...
Probab=97.12 E-value=0.00068 Score=71.52 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=47.7
Q ss_pred CCcchhhhhcCCCceeeeeeecCCCcccCCCCCcCCCCcchHHHHHHHHHHHHHH
Q 005997 47 ATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQ 101 (665)
Q Consensus 47 dTDf~vf~~~g~i~GlD~A~~~~~~~YHT~~D~~~~i~~~slQh~G~n~L~l~~~ 101 (665)
.+|...|.+ .|+|+++++.......|||++|++++++++++++.++-+..++.+
T Consensus 272 ~sDh~~F~~-~GiP~~~~~~~~~~~~yHt~~Dt~~~ld~~~l~~~~~~~~~~v~e 325 (329)
T 2afw_A 272 QDDHIPFLR-RGVPVLHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVFVLE 325 (329)
T ss_dssp CSTTHHHHT-TTCCEEEECCSSCCTTTTSTTCSSTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHhHHH-CCCCEEEEEcCCCCCCCCCCCCchhhCCHHHHHHHHHHHHHHHHH
Confidence 478888888 699999999988889999999999999999999999977766654
No 12
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...
Probab=96.32 E-value=0.0032 Score=65.24 Aligned_cols=63 Identities=21% Similarity=0.235 Sum_probs=52.1
Q ss_pred CCCcchhhhhcCCCceeeeee---ecCCCcccCCCCCcCCCCcc--hHHHHHHHHHHHHHHhhcCCCCC
Q 005997 46 SATDFQVYKEVAGLSGLDFAY---TDKSAVYHTKNDKLDLLKPG--SLQHLGENMLAFLLQAASSTSLP 109 (665)
Q Consensus 46 sdTDf~vf~~~g~i~GlD~A~---~~~~~~YHT~~D~~~~i~~~--slQh~G~n~L~l~~~l~~~~~l~ 109 (665)
..||...|.+ .|+|++.+.- .+....|||+.|++++++++ .+|+.++.+.++++.|++++.+.
T Consensus 226 ~~sD~~~f~~-~GiP~~~~~~~~~~~~~~~yHt~~Dt~~~~d~~~~~~~~~~~l~~~~~~~La~~~~~~ 293 (299)
T 1rtq_A 226 ACSDHASWHN-AGYPAAMPFESKFNDYNPRIHTTQDTLANSDPTGSHAKKFTQLGLAYAIEMGSATGDT 293 (299)
T ss_dssp CCSTHHHHHH-TTCCEECEESSCGGGSCTTTTSTTCCGGGSCTTCHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred CCCcHHHHHH-CCCCEEEecccccccCCCCCCCccccccccCccHHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 5799999988 8999986532 23346899999999999994 78999999999999999988653
No 13
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X*
Probab=96.25 E-value=0.0037 Score=66.28 Aligned_cols=55 Identities=25% Similarity=0.326 Sum_probs=49.5
Q ss_pred CCCcchhhhhcCCCceeeeeeecCCCcccCCCCCcCCCCcchHHHHHHHHHHHHHH
Q 005997 46 SATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQ 101 (665)
Q Consensus 46 sdTDf~vf~~~g~i~GlD~A~~~~~~~YHT~~D~~~~i~~~slQh~G~n~L~l~~~ 101 (665)
..+|..-|.+ .|||++++.-......|||+.||+|+|+..++++.+.-+.+++.+
T Consensus 272 ~~SDH~pF~~-~GIP~~~~~~~~f~~~yHt~~Dt~d~id~~~l~~~~~i~~~fv~E 326 (330)
T 3pb6_X 272 VEDDHIPFLR-RGVPVLHLISTPFPAVWHTPADTEVNLHPPTVHNLCRILAVFLAE 326 (330)
T ss_dssp CSCTTHHHHT-TTCCEEEEECSSCCTTTTSTTCSGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCchHhHHH-CCCCEEEEEcCCCCCCCCCCcCchhhCCHHHHHHHHHHHHHHHHH
Confidence 3478999999 999999998777778999999999999999999999999987765
No 14
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=94.38 E-value=0.032 Score=60.65 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=49.9
Q ss_pred CCCCCcchhhhhcCC--CceeeeeeecCC-CcccCCCCCcCCCCcchHHHHHHHHHHHHHHhhcC
Q 005997 44 ITSATDFQVYKEVAG--LSGLDFAYTDKS-AVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 105 (665)
Q Consensus 44 ipsdTDf~vf~~~g~--i~GlD~A~~~~~-~~YHT~~D~~~~i~~~slQh~G~n~L~l~~~l~~~ 105 (665)
.|...|=++|-+ .| ||...|--...+ -.|||+.|+++.|++.+||...+-++..++.|-+.
T Consensus 293 ~~~GSDh~qF~s-pG~dIPv~~~~r~~~~~peYHTs~Dtld~ISpe~L~~s~~iv~~~i~~Le~n 356 (435)
T 3k9t_A 293 FPWGSDERQFSS-PGINLSVGSLMRSCYGFDGYHTSADNLCYMNKDGLADSYKTYLEVIYTIENN 356 (435)
T ss_dssp CSCSSTHHHHTS-TTTCCCEEEEESSCTTCTTTTBTTSSGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCcchhHhh-CCCCCCEEEEecCCCCCcccCCCcCChhhCCHHHHHHHHHHHHHHHHHhhcc
Confidence 345679999998 55 787776653333 36999999999999999999999999999998765
No 15
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=54.82 E-value=17 Score=28.14 Aligned_cols=35 Identities=20% Similarity=0.440 Sum_probs=20.4
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhCCch
Q 005997 362 GTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKR 398 (665)
Q Consensus 362 ~~Pd~~~d~~Ia~~~a~~t~l~~~~llPli~~~~~~~ 398 (665)
..|-|+ .++|++.++....+..+++=-+..|+|++
T Consensus 6 ~vp~Wi--Ii~svl~GLLLL~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 6 RVPLWV--ILLSAFAGLLLLMLLILALWKIGFFKRPL 40 (54)
T ss_dssp CCCTHH--HHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred cCchHH--HHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 467775 55555555555444555555566676654
No 16
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=37.35 E-value=52 Score=25.46 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=19.3
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhCCch
Q 005997 362 GTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKR 398 (665)
Q Consensus 362 ~~Pd~~~d~~Ia~~~a~~t~l~~~~llPli~~~~~~~ 398 (665)
..|-|+ .+++++.+++...+..+++=-+..|+|++
T Consensus 9 ~vp~wi--Ii~svl~GLllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 9 AIPIWW--VLVGVLGGLLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp TCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred CcchHH--HHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 367675 55555555554444445555556666654
No 17
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=33.74 E-value=39 Score=22.58 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005997 370 VILAVFIAVVLCLTLVYLL 388 (665)
Q Consensus 370 ~~Ia~~~a~~t~l~~~~ll 388 (665)
-+||.++|+++.+.+||-+
T Consensus 7 eviaglvalltflafgfwl 25 (32)
T 2lx0_A 7 EVIAGLVALLTFLAFGFWL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999743
No 18
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A
Probab=28.32 E-value=24 Score=35.07 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=42.2
Q ss_pred CCCcchhhhhcCCCceeeeeeecCCCcccCCCCCcCCCCcchHHHHHHHHHHHHHHhhc
Q 005997 46 SATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAAS 104 (665)
Q Consensus 46 sdTDf~vf~~~g~i~GlD~A~~~~~~~YHT~~D~~~~i~~~slQh~G~n~L~l~~~l~~ 104 (665)
..||.+.|.+ .++|.+.+..-.+ .+||+.+ .++..-+++.-+-+..+++.|.+
T Consensus 216 ggtD~~~~~~-~g~p~~~~~~~~~--~~Hs~~E---~v~~~d~~~~~~vl~~~l~~l~~ 268 (268)
T 3t68_A 216 GTSDGRFIAQ-MGAQVVELGPVNA--TIHKVNE---CVRIADLEKLTDMYQKTLNHLLG 268 (268)
T ss_dssp CCHHHHHHHH-HTCEEEECCSBCT--TTTSTTC---EEEHHHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHh-cCCCEEEEeeCCC--CCCCccc---cccHHHHHHHHHHHHHHHHHHhC
Confidence 5899999998 7889988866443 3499985 56888899999888888888753
Done!