BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006001
(665 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/507 (41%), Positives = 318/507 (62%), Gaps = 52/507 (10%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVK 221
K++D+VP F E A I+EEELG P+ ++ FD P+AAASLGQVH+A+L GE+VVVK
Sbjct: 123 KLQDEVPAFSYEQAAGIIEEELGKPIAKLYRSFDPVPLAAASLGQVHKAQLHTGEDVVVK 182
Query: 222 VQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAA 281
VQRPGLK LF IDL L+ IA+Y Q PK G RDW IY+EC +L+QE DY +E
Sbjct: 183 VQRPGLKKLFTIDLAILKKIAQYFQN-HPKW-GRGRDWNGIYEECCKILWQETDYLREGR 240
Query: 282 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA 341
+A+ F NF+ D+VKVP ++W YT+ QILT+EY+PGIKI+ +L+ G++RK L +
Sbjct: 241 SADTFRRNFRGEDWVKVPRVYWRYTSTQILTLEYLPGIKISHYDALEAAGLERKELAQLG 300
Query: 342 VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIY 401
+YL Q+L+HGFFHADPHPGN+AV G LIFYDFGMMG I+P+ + L++ +G+
Sbjct: 301 ARAYLFQLLNHGFFHADPHPGNLAVSP-EAGELIFYDFGMMGEITPDTKNKLMDTLFGVA 359
Query: 402 EKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKP 461
EK+A++++ ++V +G L T D +RR+ QF L++F + KP
Sbjct: 360 EKNAERIVNSLVALGALKETEDMGPIRRSVQFLLDNFMD-------------------KP 400
Query: 462 LSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDIT 521
++Q + I +DL IA DQPFRFPATFTFV+RAFS L+G+GKGLDP F+
Sbjct: 401 F--------EEQSITKISDDLYEIAYDQPFRFPATFTFVMRAFSTLEGVGKGLDPDFNFM 452
Query: 522 EIAKPYAMELLK----FREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRL 577
+A+P+A++++ F AG + + RQ N R ++ +++ RL
Sbjct: 453 AVAQPFALQIMNNSNGFNPAG------NIMDELGRQAVQVGNSALGLPR--RIEDSLDRL 504
Query: 578 EQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPA---ILAY 634
++GD+++RVR+ E++R +R+ +Q + +LV AT+L++N+ + A +L
Sbjct: 505 DRGDIRVRVRSTETDRLLRRMGTMQMGTNYVLFTCALVLSATLLFVNNYFMAAAVVLLMS 564
Query: 635 VSCAFFGFQVLFGIIKVKKLDQREKLI 661
+ AF +++L K+L++++++
Sbjct: 565 LVPAFALWRLL------KRLERQDRMF 585
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 296 bits (757), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 163/464 (35%), Positives = 272/464 (58%), Gaps = 40/464 (8%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVK 221
+++D+VPPF S A++++E+EL +D++F++F+V P+A+ASLGQVHRA L GE VVVK
Sbjct: 96 QLQDRVPPFDSRQAIAVIEQELHGAIDEIFQQFEVTPLASASLGQVHRAVLPTGEAVVVK 155
Query: 222 VQRPGLKDLFDIDLKNLRVIAEYLQKIDP--KSDGAKRDWVAIYDECASVLYQEIDYTQE 279
VQRPGL L ++D + L ++ P + K + AIY E S+L+ EIDY E
Sbjct: 156 VQRPGLDSLLNLDFELLHQTLRLAKRWLPGFRRLAQKYEIEAIYQEFFSLLFLEIDYIHE 215
Query: 280 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGR 339
NAE F NF D V+VP I+W+YTT +LT+EY+PGIK++ Q+L+ G++ + +
Sbjct: 216 GKNAERFRQNFADYPRVRVPEIYWQYTTRMVLTLEYLPGIKVDDRQALETAGINLDLVIQ 275
Query: 340 YAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYG 399
+ +YL+Q+L GFF +DPHPGN+AVD + G LIFYDFG M + ++ +++ F+
Sbjct: 276 TGICAYLKQLLVDGFFQSDPHPGNMAVD--SQGDLIFYDFGTMAEVKIIAKDQMVQTFFA 333
Query: 400 IYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFK 459
+ KD ++VL+A++ MG++ P GD + ++R F L++F +
Sbjct: 334 VLRKDTNQVLEALIYMGLVEPKGDLSPIKRIINFLLDNFRD------------------- 374
Query: 460 KPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFD 519
KP+ I+ Q +GE++ A+ QPFR P TF++++ S LDGI + LDPR++
Sbjct: 375 KPID----IKAFDQ----VGEEVYAMFQQQPFRLPPQMTFILKSISTLDGIARALDPRYN 426
Query: 520 ITEIAKPY--AMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRL 577
+ ++P+ ++ + + + + +L+ + A L R + + L E +L
Sbjct: 427 LIAASQPFIQSITVAQPKRSLAMALLQQVKQ------FALDQLNRPSRNQQFLQELAAKL 480
Query: 578 EQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATIL 621
E+G+L+ R+ E +R +++ K++ A G + AT+L
Sbjct: 481 ERGELQFATRSPEGDRLLRKIHLALKSLIFACLTGFTLLSATVL 524
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 251 bits (640), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 148/409 (36%), Positives = 223/409 (54%), Gaps = 45/409 (11%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 222
++DQ+P FP+E A +EEELGAP ++++ EPIAAASLGQV++ +LK GE V VKV
Sbjct: 143 LQDQLPSFPNEVAYRFIEEELGAPAEEIYAELSPEPIAAASLGQVYKGKLKTGEAVAVKV 202
Query: 223 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 282
QRP L +D+ +R ++ + ++ + D VAI DE AS +++E++Y QEA N
Sbjct: 203 QRPDLVRRITLDIYIMRSLSLWARR---SVKRLRSDLVAITDELASRVFEEMNYYQEAIN 259
Query: 283 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 342
E FA + + + VP+I+W+YT ++LTME+V GIK+ I+++ G+D L V
Sbjct: 260 GEKFAQLYGSLPEIYVPSIYWQYTGRRVLTMEWVEGIKLTNIKAIQAQGIDATHLVEVGV 319
Query: 343 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYE 402
+ L Q+L HGFFHADPHPGN+ + GRL + DFGMM +I P R GL+EA +
Sbjct: 320 QCSLRQLLEHGFFHADPHPGNLLA--MADGRLAYLDFGMMSTIQPYQRYGLIEAVVHLVN 377
Query: 403 KDADKVLQAMVQMGVLVPTGDTTA-VRRTAQFFLNSFEERLAAQRKEREITTQELGFKKP 461
+D D + + V++ L P D + Q F N+ +A EL FK
Sbjct: 378 RDFDSLAKDYVKLDFLKPDTDLKPIIPALGQVFGNALGASVA-----------ELNFK-- 424
Query: 462 LSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDIT 521
+I + + A+ + PFR PA + ++R+ L+GI G+DP F +
Sbjct: 425 ---------------SITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGIDPNFKVL 469
Query: 522 EIAKPYAMELL------KFREAGVEVILKDFRNRWDRQTRAFYNLFRQA 564
A PY + L + R + E++ K+ RW+R NL R A
Sbjct: 470 SKAYPYIAKRLLTDQSEELRTSLKELLFKEGSFRWNR----LENLLRNA 514
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 238 bits (607), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/397 (34%), Positives = 204/397 (51%), Gaps = 38/397 (9%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVK 221
K++DQ+PPF ++ A ++EE+LG +D+ + P+AAASLGQV+RA L GEEV VK
Sbjct: 108 KLQDQLPPFDNDLAFQLMEEQLGMKVDEAYREISAHPVAAASLGQVYRAMLFSGEEVAVK 167
Query: 222 VQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAA 281
VQRP L+ +DL +R+ A+ + P + G D I DE L++EIDY E
Sbjct: 168 VQRPNLRPRLSLDLYLMRLGAQKFGRFLPLNLG--HDLTLIVDEFGIKLFEEIDYLNEGR 225
Query: 282 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA 341
NAE FA NF VKVP I+W+Y+ ++LT+E++ G K+ + G+D + R
Sbjct: 226 NAEKFAENFHGDAEVKVPCIYWQYSNQKVLTLEWIQGFKLTDTDKIRAAGLDPSDIIRIG 285
Query: 342 VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIY 401
V S L Q+L HGFFHADPHPGN+ GR+ + DFGMM + P +E + + +
Sbjct: 286 VTSGLRQLLEHGFFHADPHPGNLFA--TLDGRMAYIDFGMMDQLEPGTKETIASSIVQLI 343
Query: 402 EKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKP 461
KD + + + +G L P D T + + N F + + Q+ FK
Sbjct: 344 NKDYLALTEDFIALGFLAPNTDITPIIPALE---NVFGSAIGQ-------SVQDFNFK-- 391
Query: 462 LSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDIT 521
I +D + D PFR PA F ++R+ +G+ LDP F I
Sbjct: 392 ---------------TITDDFSELMYDYPFRVPAKFALIIRSLVTQEGLALSLDPNFKIV 436
Query: 522 EIAKPYAMELL------KFREAGVEVILKDFRNRWDR 552
E+A PY L + R ++V+ K+ + +W R
Sbjct: 437 EVAYPYVARRLLTGESPQLRRQLIDVLFKNGKFQWQR 473
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 208 bits (530), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 135/413 (32%), Positives = 210/413 (50%), Gaps = 46/413 (11%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVV 220
+++D +P FP A + +E EL L+ +F EPIAAASLGQV++A+L+ G+ V V
Sbjct: 185 ELQDALPTFPDAEAFACIERELDLSLETIFSSVSPEPIAAASLGQVYKAQLRYSGQVVAV 244
Query: 221 KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEA 280
KVQRPG+++ +D +R + + + K D D + + DE A +YQE++Y QEA
Sbjct: 245 KVQRPGIEEAIGLDFYLIRGVGKLINKY---VDFITTDVLTLIDEFACRVYQELNYVQEA 301
Query: 281 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY 340
NA F + D V VP IFW+YT+ ++LTME+V G K+N +++ G+ L
Sbjct: 302 QNARRFKKLYADKADVLVPDIFWDYTSRKVLTMEWVEGTKLNEQLAIESQGLKVLDLVNT 361
Query: 341 AVESYLEQILSHGFFHADPHPGN-IAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYG 399
++ L Q+L +GFFHADPHPGN +A D G+L F DFGMM R ++
Sbjct: 362 GIQCSLRQLLEYGFFHADPHPGNLLATPD---GKLAFLDFGMMSETPEEARFAIIGHVVH 418
Query: 400 IYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFK 459
+ +D + + + + L P D T + + F F++ L T EL FK
Sbjct: 419 LVNRDYEAMARDYYALKFLSPDVDVTPIIPALRDF---FDDAL-------NYTVSELNFK 468
Query: 460 KPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFD 519
+ + L A+ PF P + ++R+ +VL+G+ DP F
Sbjct: 469 -----------------TLVDGLGAVFYQYPFNVPPYYALILRSLTVLEGLALYADPNFK 511
Query: 520 ITEIAKPY-AMELLK-----FREAGVEVILKDFRNRWDRQTRAFYNLFRQADR 566
+ + PY A LL R+A +E++ KD + RW+R NL +Q +
Sbjct: 512 VLAASYPYFAKRLLTDPNPYLRDALIELLFKDGKFRWNR----LENLLQQGSK 560
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 204 bits (520), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/366 (33%), Positives = 195/366 (53%), Gaps = 43/366 (11%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVK 221
++DQ+ PF +E A +++E+ELG P+D++F EP+AAASLGQV++ARL+ G+ V VK
Sbjct: 159 LQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVVAVK 218
Query: 222 VQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAA 281
VQRPG++ +D LR IA ++ K+ D A+ DE A+ L++E+DY EA
Sbjct: 219 VQRPGVRAAIALDTLILRYIAGLIK----KAGRFNSDLEAVVDEWATSLFKEMDYLNEAQ 274
Query: 282 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA 341
N F + + V VP ++ EY+T ++L ME+V G K+N + L L
Sbjct: 275 NGIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEGQKLNEVNDL--------YLVEVG 326
Query: 342 VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIY 401
V Q+L +GF+HADPHPGN G+L + DFGMMG P +R+G +EA +
Sbjct: 327 VYCSFNQLLEYGFYHADPHPGNFL--RTYDGQLAYLDFGMMGDFRPELRDGFMEACLHLV 384
Query: 402 EKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKP 461
+D + + V +G+L PT + +AV + + F++ A R R I+ +L
Sbjct: 385 NRDFKALAKDFVTLGLLPPTAEKSAVTKA---LTDVFQD--AISRGVRNISFGDL----- 434
Query: 462 LSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDIT 521
L +G+ + FR P F+ V+R+ +VL+GI G+ P + +
Sbjct: 435 -------------LGDLGKTMYRFK----FRIPPYFSLVIRSLAVLEGIAIGISPNYKVL 477
Query: 522 EIAKPY 527
P+
Sbjct: 478 GSTYPW 483
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/398 (32%), Positives = 198/398 (49%), Gaps = 41/398 (10%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVK 221
++D VPPFP+E A +I+EEELG PL+++F + + IAAASLGQV+RA L+ GE+V +K
Sbjct: 206 LQDDVPPFPNEVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVYRATLRATGEDVAIK 265
Query: 222 VQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAA 281
VQRP ++ + DL R +A +L + G + I DE L +E+DYT EA
Sbjct: 266 VQRPQIEPIIYRDLFLFRTLASFLNGFSLQKLGCNAE--LIVDEFGEKLLEELDYTLEAR 323
Query: 282 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA 341
N E F NFKD VK+P ++ P++L ME++ GI+ Q++ + G+D
Sbjct: 324 NIEDFLENFKDDPTVKIPGVYKNLCGPRVLVMEWIDGIRCTDPQAIKDAGIDLNGFLTVG 383
Query: 342 VESYLEQILSHGFFHADPHPGNI-AVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGI 400
V + L Q+L G FH DPHPGNI A+ D GR+ + DFG + +S ++ L++A
Sbjct: 384 VSAALRQLLEFGLFHGDPHPGNIFAMQD---GRIAYVDFGNVAVLSQQNKQILIDAVVHA 440
Query: 401 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 460
+D ++ ++G L D + + + + + A R +T Q F K
Sbjct: 441 VNEDYGEMANDFTRLGFLAKDTDVSPIVPALEAIWQNSAGKGLADFNFRSVTGQ---FNK 497
Query: 461 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 520
+ D P R P F+ V+R+ +GI L P F
Sbjct: 498 ------------------------LVYDFPIRIPERFSLVIRSLLTQEGICFTLKPDFKF 533
Query: 521 TEIAKPYAMELL------KFREAGVEVILKDFRNRWDR 552
E+A PY + L RE ++V+ KD +W R
Sbjct: 534 LEVAYPYVAKRLLTDPNPALRERLIQVLFKDGVFQWKR 571
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 196 bits (499), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 129/374 (34%), Positives = 202/374 (54%), Gaps = 45/374 (12%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK------GEE 217
++D+VPPF + A +VE LG ++++F FD++P+A+AS+ QVH+A L+ G E
Sbjct: 88 LQDRVPPFDGDIARQVVERSLGRKVEELFVDFDLKPVASASVAQVHKAWLRQPDGGRGRE 147
Query: 218 VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT 277
V VKV RPG+ + + DL +R +A +++K+ +DG + + E L+ E+D
Sbjct: 148 VAVKVLRPGILPVIEQDLSLMRTLAGWVEKL--FADGKRLKPREVVAEFDKYLHDELDMM 205
Query: 278 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRL 337
EAANA NFK D + VP +F++Y++ ++LT+E++ GI + +I+ L E GVD ++L
Sbjct: 206 HEAANASQLRRNFKGSDMLIVPEVFYDYSSREVLTLEWMHGIPVGQIERLREAGVDLQKL 265
Query: 338 GRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAF 397
R+ VE + Q+ HGFFHAD HPGNI V GR I DFG++GS++ + L F
Sbjct: 266 SRFGVEIFFTQVFRHGFFHADMHPGNIFV--AADGRYIALDFGIVGSLTDTDKHYLAVNF 323
Query: 398 YGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELG 457
+ +D +V A ++ G VP DT A EE AA R T E
Sbjct: 324 LAFFNRDYHRVATAHIESG-WVPR-DTRA------------EELEAAVR-----TVCEPI 364
Query: 458 FKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRF----PATFTFVVRAFSVLDGIGKG 513
F+KPLS+ + G LL + + RF + + ++G+G+
Sbjct: 365 FEKPLSE-----------ISFGMVLLRL-FETSRRFNVEIQPQLVLLQKTLLNIEGLGRQ 412
Query: 514 LDPRFDITEIAKPY 527
LDP D+ + AKP+
Sbjct: 413 LDPELDLWDTAKPF 426
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 150/489 (30%), Positives = 245/489 (50%), Gaps = 69/489 (14%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEE 217
K++DQVPPF S A++IVE+ LGA +D +F+ F+ P+A+AS+ QVH A+LK G+
Sbjct: 87 KLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKA 146
Query: 218 VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEI 274
V VKV RP + + D DL +R IA + +++ +DG + R+ VA +D+ L+ E+
Sbjct: 147 VAVKVLRPNMLPVIDSDLALMRDIATWAERL--WADGRRLKPREVVAEFDKY---LHDEL 201
Query: 275 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR 334
D +EAAN NF +D + VP +FW+Y+TP +L ME + G+ I+++ +L GVD
Sbjct: 202 DLMREAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDI 261
Query: 335 KRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREG 392
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S +
Sbjct: 262 PKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNY 321
Query: 393 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT------TAVRRTAQ-FFLNSFEERLAAQ 445
L + F +++D +V ++ G + P DT +A+R + +F + ++ Q
Sbjct: 322 LAQNFLAFFKRDYHRVATLHLESGWVPP--DTRVEELESAIRAVCEPYFDRALKDISLGQ 379
Query: 446 RKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFS 505
R +T S+ +E + Q L + + +L +
Sbjct: 380 VLMRLFST---------SRRFNVEIQPQ-LVLLQKTMLNV-------------------- 409
Query: 506 VLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQAD 565
+G+G+ LDP D+ + AKPY +E + G+ + F+ + ++ L R
Sbjct: 410 --EGLGRSLDPELDLWKTAKPY-LERWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVH 466
Query: 566 RVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNS 625
+ R DL ++ L +R R+ G AVGAG+++
Sbjct: 467 QALISHHEAPRAISDDLIRQI--LVEQRRTNRLLQALLVFGLAVGAGAVIA--------- 515
Query: 626 IRVPAILAY 634
RV +LAY
Sbjct: 516 -RVLIVLAY 523
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 150/489 (30%), Positives = 245/489 (50%), Gaps = 69/489 (14%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEE 217
K++DQVPPF S A++IVE+ LGA +D +F+ F+ P+A+AS+ QVH A+LK G+
Sbjct: 87 KLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKA 146
Query: 218 VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEI 274
V VKV RP + + D DL +R IA + +++ +DG + R+ VA +D+ L+ E+
Sbjct: 147 VAVKVLRPNMLPVIDSDLALMRDIATWAERL--WADGRRLKPREVVAEFDKY---LHDEL 201
Query: 275 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR 334
D +EAAN NF +D + VP +FW+Y+TP +L ME + G+ I+++ +L GVD
Sbjct: 202 DLMREAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDI 261
Query: 335 KRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREG 392
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S +
Sbjct: 262 PKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNY 321
Query: 393 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT------TAVRRTAQ-FFLNSFEERLAAQ 445
L + F +++D +V ++ G + P DT +A+R + +F + ++ Q
Sbjct: 322 LAQNFLAFFKRDYHRVATLHLESGWVPP--DTRVEELESAIRAVCEPYFDRALKDISLGQ 379
Query: 446 RKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFS 505
R +T S+ +E + Q L + + +L +
Sbjct: 380 VLMRLFST---------SRRFNVEIQPQ-LVLLQKTMLNV-------------------- 409
Query: 506 VLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQAD 565
+G+G+ LDP D+ + AKPY +E + G+ + F+ + ++ L R
Sbjct: 410 --EGLGRSLDPELDLWKTAKPY-LERWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVH 466
Query: 566 RVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNS 625
+ R DL ++ L +R R+ G AVGAG+++
Sbjct: 467 QALISHHEAPRAISDDLIRQI--LVEQRRTNRLLQALLVFGLAVGAGAVIA--------- 515
Query: 626 IRVPAILAY 634
RV +LAY
Sbjct: 516 -RVLIVLAY 523
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 150/489 (30%), Positives = 245/489 (50%), Gaps = 69/489 (14%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEE 217
K++DQVPPF S A++IVE+ LGA +D +F+ F+ P+A+AS+ QVH A+LK G+
Sbjct: 87 KLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKA 146
Query: 218 VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEI 274
V VKV RP + + D DL +R IA + +++ +DG + R+ VA +D+ L+ E+
Sbjct: 147 VAVKVLRPNMLPVIDSDLALMRDIATWAERL--WADGRRLKPREVVAEFDKY---LHDEL 201
Query: 275 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR 334
D +EAAN NF +D + VP +FW+Y+TP +L ME + G+ I+++ +L GVD
Sbjct: 202 DLMREAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDI 261
Query: 335 KRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREG 392
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S +
Sbjct: 262 PKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNY 321
Query: 393 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT------TAVRRTAQ-FFLNSFEERLAAQ 445
L + F +++D +V ++ G + P DT +A+R + +F + ++ Q
Sbjct: 322 LAQNFLAFFKRDYHRVATLHLESGWVPP--DTRVEELESAIRAVCEPYFDRALKDISLGQ 379
Query: 446 RKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFS 505
R +T S+ +E + Q L + + +L +
Sbjct: 380 VLMRLFST---------SRRFNVEIQPQ-LVLLQKTMLNV-------------------- 409
Query: 506 VLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQAD 565
+G+G+ LDP D+ + AKPY +E + G+ + F+ + ++ L R
Sbjct: 410 --EGLGRSLDPELDLWKTAKPY-LERWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVH 466
Query: 566 RVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNS 625
+ R DL ++ L +R R+ G AVGAG+++
Sbjct: 467 QALISHHEAPRAISDDLIRQI--LVEQRRTNRLLQALLVFGLAVGAGAVIA--------- 515
Query: 626 IRVPAILAY 634
RV +LAY
Sbjct: 516 -RVLIVLAY 523
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 150/489 (30%), Positives = 245/489 (50%), Gaps = 69/489 (14%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEE 217
K++DQVPPF S A++IVE+ LGA +D +F+ F+ P+A+AS+ QVH A+LK G+
Sbjct: 87 KLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKA 146
Query: 218 VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEI 274
V VKV RP + + D DL +R IA + +++ +DG + R+ VA +D+ L+ E+
Sbjct: 147 VAVKVLRPNMLPVIDSDLALMRDIATWAERL--WADGRRLKPREVVAEFDKY---LHDEL 201
Query: 275 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR 334
D +EAAN NF +D + VP +FW+Y+TP +L ME + G+ I+++ +L GVD
Sbjct: 202 DLMREAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDI 261
Query: 335 KRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREG 392
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S +
Sbjct: 262 PKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNY 321
Query: 393 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT------TAVRRTAQ-FFLNSFEERLAAQ 445
L + F +++D +V ++ G + P DT +A+R + +F + ++ Q
Sbjct: 322 LAQNFLAFFKRDYHRVATLHLESGWVPP--DTRVEELESAIRAVCEPYFDRALKDISLGQ 379
Query: 446 RKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFS 505
R +T S+ +E + Q L + + +L +
Sbjct: 380 VLMRLFST---------SRRFNVEIQPQ-LVLLQKTMLNV-------------------- 409
Query: 506 VLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQAD 565
+G+G+ LDP D+ + AKPY +E + G+ + F+ + ++ L R
Sbjct: 410 --EGLGRSLDPELDLWKTAKPY-LERWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVH 466
Query: 566 RVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNS 625
+ R DL ++ L +R R+ G AVGAG+++
Sbjct: 467 QALISHHEAPRAISDDLIRQI--LVEQRRTNRLLQALLVFGLAVGAGAVIA--------- 515
Query: 626 IRVPAILAY 634
RV +LAY
Sbjct: 516 -RVLIVLAY 523
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 150/489 (30%), Positives = 245/489 (50%), Gaps = 69/489 (14%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEE 217
K++DQVPPF S A++IVE+ LGA +D +F+ F+ P+A+AS+ QVH A+LK G+
Sbjct: 87 KLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKA 146
Query: 218 VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEI 274
V VKV RP + + D DL +R IA + +++ +DG + R+ VA +D+ L+ E+
Sbjct: 147 VAVKVLRPNMLPVIDSDLALMRDIATWAERL--WADGRRLKPREVVAEFDKY---LHDEL 201
Query: 275 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR 334
D +EAAN NF +D + VP +FW+Y+TP +L ME + G+ I+++ +L GVD
Sbjct: 202 DLMREAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDI 261
Query: 335 KRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREG 392
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S +
Sbjct: 262 PKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNY 321
Query: 393 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT------TAVRRTAQ-FFLNSFEERLAAQ 445
L + F +++D +V ++ G + P DT +A+R + +F + ++ Q
Sbjct: 322 LAQNFLAFFKRDYHRVATLHLESGWVPP--DTRVEELESAIRAVCEPYFDRALKDISLGQ 379
Query: 446 RKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFS 505
R +T S+ +E + Q L + + +L +
Sbjct: 380 VLMRLFST---------SRRFNVEIQPQ-LVLLQKTMLNV-------------------- 409
Query: 506 VLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQAD 565
+G+G+ LDP D+ + AKPY +E + G+ + F+ + ++ L R
Sbjct: 410 --EGLGRSLDPELDLWKTAKPY-LERWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVH 466
Query: 566 RVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNS 625
+ R DL ++ L +R R+ G AVGAG+++
Sbjct: 467 QALISHHEAPRAISDDLIRQI--LVEQRRTNRLLQALLVFGLAVGAGAVIA--------- 515
Query: 626 IRVPAILAY 634
RV +LAY
Sbjct: 516 -RVLIVLAY 523
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 150/489 (30%), Positives = 245/489 (50%), Gaps = 69/489 (14%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEE 217
K++DQVPPF S A++IVE+ LGA +D +F+ F+ P+A+AS+ QVH A+LK G+
Sbjct: 87 KLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKA 146
Query: 218 VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEI 274
V VKV RP + + D DL +R IA + +++ +DG + R+ VA +D+ L+ E+
Sbjct: 147 VAVKVLRPNMLPVIDSDLALMRDIATWAERL--WADGRRLKPREVVAEFDKY---LHDEL 201
Query: 275 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR 334
D +EAAN NF +D + VP +FW+Y+TP +L ME + G+ I+++ +L GVD
Sbjct: 202 DLMREAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDI 261
Query: 335 KRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREG 392
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S +
Sbjct: 262 PKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNY 321
Query: 393 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT------TAVRRTAQ-FFLNSFEERLAAQ 445
L + F +++D +V ++ G + P DT +A+R + +F + ++ Q
Sbjct: 322 LAQNFLAFFKRDYHRVATLHLESGWVPP--DTRVEELESAIRAVCEPYFDRALKDISLGQ 379
Query: 446 RKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFS 505
R +T S+ +E + Q L + + +L +
Sbjct: 380 VLMRLFST---------SRRFNVEIQPQ-LVLLQKTMLNV-------------------- 409
Query: 506 VLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQAD 565
+G+G+ LDP D+ + AKPY +E + G+ + F+ + ++ L R
Sbjct: 410 --EGLGRSLDPELDLWKTAKPY-LERWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVH 466
Query: 566 RVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNS 625
+ R DL ++ L +R R+ G AVGAG+++
Sbjct: 467 QALISHHEAPRAISDDLIRQI--LVEQRRTNRLLQALLVFGLAVGAGAVIA--------- 515
Query: 626 IRVPAILAY 634
RV +LAY
Sbjct: 516 -RVLIVLAY 523
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 150/489 (30%), Positives = 245/489 (50%), Gaps = 69/489 (14%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEE 217
K++DQVPPF S A++IVE+ LGA +D +F+ F+ P+A+AS+ QVH A+LK G+
Sbjct: 87 KLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKA 146
Query: 218 VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEI 274
V VKV RP + + D DL +R IA + +++ +DG + R+ VA +D+ L+ E+
Sbjct: 147 VAVKVLRPNMLPVIDSDLALMRDIATWAERL--WADGRRLKPREVVAEFDKY---LHDEL 201
Query: 275 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR 334
D +EAAN NF +D + VP +FW+Y+TP +L ME + G+ I+++ +L GVD
Sbjct: 202 DLMREAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDI 261
Query: 335 KRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREG 392
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S +
Sbjct: 262 PKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNY 321
Query: 393 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT------TAVRRTAQ-FFLNSFEERLAAQ 445
L + F +++D +V ++ G + P DT +A+R + +F + ++ Q
Sbjct: 322 LAQNFLAFFKRDYHRVATLHLESGWVPP--DTRVEELESAIRAVCEPYFDRALKDISLGQ 379
Query: 446 RKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFS 505
R +T S+ +E + Q L + + +L +
Sbjct: 380 VLMRLFST---------SRRFNVEIQPQ-LVLLQKTMLNV-------------------- 409
Query: 506 VLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQAD 565
+G+G+ LDP D+ + AKPY +E + G+ + F+ + ++ L R
Sbjct: 410 --EGLGRSLDPELDLWKTAKPY-LERWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVH 466
Query: 566 RVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNS 625
+ R DL ++ L +R R+ G AVGAG+++
Sbjct: 467 QALISHHEAPRAISDDLIRQI--LVEQRRTNRLLQALLVFGLAVGAGAVIA--------- 515
Query: 626 IRVPAILAY 634
RV +LAY
Sbjct: 516 -RVLIVLAY 523
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 150/489 (30%), Positives = 245/489 (50%), Gaps = 69/489 (14%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEE 217
K++DQVPPF S A++IVE+ LGA +D +F+ F+ P+A+AS+ QVH A+LK G+
Sbjct: 87 KLQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKA 146
Query: 218 VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEI 274
V VKV RP + + D DL +R IA + +++ +DG + R+ VA +D+ L+ E+
Sbjct: 147 VAVKVLRPNMLPVIDSDLALMRDIATWAERL--WADGRRLKPREVVAEFDKY---LHDEL 201
Query: 275 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR 334
D +EAAN NF +D + VP +FW+Y+TP +L ME + G+ I+++ +L GVD
Sbjct: 202 DLMREAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDI 261
Query: 335 KRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREG 392
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S +
Sbjct: 262 PKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNY 321
Query: 393 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT------TAVRRTAQ-FFLNSFEERLAAQ 445
L + F +++D +V ++ G + P DT +A+R + +F + ++ Q
Sbjct: 322 LAQNFLAFFKRDYHRVATLHLESGWVPP--DTRVEELESAIRAVCEPYFDRALKDISLGQ 379
Query: 446 RKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFS 505
R +T S+ +E + Q L + + +L +
Sbjct: 380 VLMRLFST---------SRRFNVEIQPQ-LVLLQKTMLNV-------------------- 409
Query: 506 VLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQAD 565
+G+G+ LDP D+ + AKPY +E + G+ + F+ + ++ L R
Sbjct: 410 --EGLGRSLDPELDLWKTAKPY-LERWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVH 466
Query: 566 RVEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNS 625
+ R DL ++ L +R R+ G AVGAG+++
Sbjct: 467 QALISHHEAPRAISDDLIRQI--LVEQRRTNRLLQALLVFGLAVGAGAVIA--------- 515
Query: 626 IRVPAILAY 634
RV +LAY
Sbjct: 516 -RVLIVLAY 523
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 196 bits (497), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 126/380 (33%), Positives = 204/380 (53%), Gaps = 52/380 (13%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEE 217
K++DQVPPF S A+ +VE+ LGAP+D +F+ F+ P+A+AS+ QVH A +K G+
Sbjct: 87 KLQDQVPPFDSAVAIGLVEKSLGAPVDVLFDDFERVPVASASIAQVHFATVKAGQHAGKA 146
Query: 218 VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEI 274
V VKV RP + + D DL LR IA + +++ +DG + R+ VA +D+ L+ E+
Sbjct: 147 VAVKVLRPNMLPVIDSDLALLRDIAVWAERL--WADGKRLKPREVVAEFDKY---LHDEL 201
Query: 275 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR 334
D +EAAN NF +D + VP ++WE+ TP +L ME + G+ I+++++L GVD
Sbjct: 202 DLMREAANGSQLRRNFAGLDLLLVPEMYWEFCTPTVLVMERMVGVPISQVETLRAAGVDI 261
Query: 335 KRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREG 392
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S +
Sbjct: 262 PKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNY 321
Query: 393 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT----TAVRRTAQ-FFLNSFEERLAAQRK 447
L + F +++D +V ++ G + PT +A+R + +F + ++ Q
Sbjct: 322 LAQNFLAFFKRDYHRVATLHLESGWVPPTTRVEELESAIRAVCEPYFDRALKDISLGQVL 381
Query: 448 EREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVL 507
R +T S+ +E + Q L + + +L +
Sbjct: 382 MRLFST---------SRRFNVEIQPQ-LVLLQKTMLNV---------------------- 409
Query: 508 DGIGKGLDPRFDITEIAKPY 527
+G+G+ LDP D+ + AKPY
Sbjct: 410 EGLGRSLDPELDLWKTAKPY 429
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 126/380 (33%), Positives = 203/380 (53%), Gaps = 52/380 (13%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEE 217
K++DQVPPF S A+ +VE LGAP+D +F+ F+ P+A+AS+ QVH A +K G+
Sbjct: 87 KLQDQVPPFESAVAIRLVENALGAPVDVLFDDFERVPVASASIAQVHFATVKAGQHAGKA 146
Query: 218 VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEI 274
V VKV RP + + D DL LR IA + +++ +DG + R+ VA +D+ L+ E+
Sbjct: 147 VAVKVLRPNMLPVIDSDLALLRDIAVWAERL--WADGKRLKPREVVAEFDKY---LHDEL 201
Query: 275 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR 334
D +EAAN NF +D + VP ++WE+ TP +L ME + G+ I+++++L GVD
Sbjct: 202 DLMREAANGSQLRRNFAGLDLLLVPEMYWEFCTPTVLVMERMVGVPISQVETLRAAGVDI 261
Query: 335 KRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREG 392
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S +
Sbjct: 262 PKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNY 321
Query: 393 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT----TAVRRTAQ-FFLNSFEERLAAQRK 447
L + F +++D +V ++ G + PT +A+R + +F + ++ Q
Sbjct: 322 LAQNFLAFFKRDYHRVATLHLESGWVPPTTRVEELESAIRAVCEPYFDRALKDISLGQVL 381
Query: 448 EREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVL 507
R +T S+ +E + Q L + + +L +
Sbjct: 382 MRLFST---------SRRFNVEIQPQ-LVLLQKTMLNV---------------------- 409
Query: 508 DGIGKGLDPRFDITEIAKPY 527
+G+G+ LDP D+ + AKPY
Sbjct: 410 EGLGRSLDPELDLWKTAKPY 429
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 126/380 (33%), Positives = 203/380 (53%), Gaps = 52/380 (13%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEE 217
K++DQVPPF S A++I+E+ LGAP+D +F+ F+ P+A+AS+ QVH A LK G++
Sbjct: 87 KLQDQVPPFDSAVAIAIIEKSLGAPVDTIFDDFERVPVASASIAQVHFATLKIGQHAGKQ 146
Query: 218 VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEI 274
V VKV RP + + D DL LR IA + +++ +DG + R+ VA +D+ L+ E+
Sbjct: 147 VAVKVLRPNMLPVIDSDLALLRDIAVWAERL--WADGKRLKPREVVAEFDKY---LHDEL 201
Query: 275 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR 334
D +EAAN NF +D + VP ++WEY T +L ME + G+ I+++ +L GVD
Sbjct: 202 DLMREAANGSQLRRNFAGLDLLLVPEMYWEYCTANVLVMERMVGVPISQVDTLRVAGVDI 261
Query: 335 KRLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREG 392
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S +
Sbjct: 262 PKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNY 321
Query: 393 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDT----TAVRRTAQ-FFLNSFEERLAAQRK 447
L + F +++D +V ++ G + T +A+R + +F + ++ Q
Sbjct: 322 LAQNFLAFFKRDYHRVATLHLESGWVPATTRVEELESAIRAVCEPYFDRALKDISLGQVL 381
Query: 448 EREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVL 507
R +T S+ +E + Q L + + +L +
Sbjct: 382 MRLFST---------SRRFNVEIQPQ-LVLLQKTMLNV---------------------- 409
Query: 508 DGIGKGLDPRFDITEIAKPY 527
+G+G+ LDP D+ + AKPY
Sbjct: 410 EGLGRSLDPELDLWKTAKPY 429
>sp|Q3KJC7|UBIB_PSEPF Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1
Length = 534
Score = 189 bits (480), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 124/368 (33%), Positives = 191/368 (51%), Gaps = 32/368 (8%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVK 221
+++D+VPPF S+ +V ++EE+LG + +VF RFDVEP+A+AS+ QVH A+LK GEEVVVK
Sbjct: 94 RLQDRVPPFDSQLSVKLIEEQLGKKISEVFSRFDVEPLASASVAQVHAAQLKTGEEVVVK 153
Query: 222 VQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAA 281
V RPGLK + DL L ++A +K+ +D V + + +Y E+D +EAA
Sbjct: 154 VIRPGLKPIIAQDLAWLFILARAAEKV--SADARLLHPVDVVSDYEKTIYDELDLLREAA 211
Query: 282 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA 341
NA NF+ + VP ++W++ P++L ME + GI++ + +L + D K L
Sbjct: 212 NASQLKRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERG 271
Query: 342 VESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYG 399
VE + Q+ FFHAD HPGNI V VN + I D G++GS++P ++ L +
Sbjct: 272 VEIFFTQVFRDSFFHADMHPGNIFVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFA 331
Query: 400 IYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFK 459
+++D +V Q + G VP A+ LN FE AA R T E F+
Sbjct: 332 FFKRDYRRVAQLHIDSG-WVP----------AETKLNEFE---AAIR-----TVCEPIFE 372
Query: 460 KPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFD 519
KPL K + L A + + ++G+G+ L P D
Sbjct: 373 KPL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLD 424
Query: 520 ITEIAKPY 527
+ A+P+
Sbjct: 425 LWNTAQPF 432
>sp|Q4ZZG5|UBIB_PSEU2 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=ubiB PE=3 SV=1
Length = 539
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 124/367 (33%), Positives = 188/367 (51%), Gaps = 32/367 (8%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 222
++D+VPPF + A+ ++EE+LGA + DVF RFD +P+A+AS+ QVH A LK GEEVVVKV
Sbjct: 95 LQDRVPPFDQQLAIKLIEEQLGARICDVFSRFDEKPLASASVAQVHAACLKTGEEVVVKV 154
Query: 223 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 282
RPGLK + DL L ++A +++ +D V + + +Y E+D +EAAN
Sbjct: 155 VRPGLKPIIGQDLAWLFILARMAERV--SADARLLHPVQVVMDYEKTIYDELDLLREAAN 212
Query: 283 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 342
A NF+ D + VP ++W++ P++L ME + G+++ + L + D K L V
Sbjct: 213 ASQLRRNFEGSDLLYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLADQRTDMKLLAERGV 272
Query: 343 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 400
E + QI FFHAD HPGNI V VN + I D G++GS++P ++ L +
Sbjct: 273 EIFFTQIFRDSFFHADMHPGNIFVSTVNPWAPKYIAIDCGIVGSLTPEDQDYLARNLFAF 332
Query: 401 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 460
+++D +V Q + G VP A+ LN FE AA R T E F+K
Sbjct: 333 FKRDYRRVAQLHIDSG-WVP----------AETKLNEFE---AAIR-----TVCEPIFEK 373
Query: 461 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 520
PL K + L A + + ++G+G+ L P D+
Sbjct: 374 PL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPELDL 425
Query: 521 TEIAKPY 527
A+PY
Sbjct: 426 WSTAQPY 432
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 137/426 (32%), Positives = 209/426 (49%), Gaps = 51/426 (11%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 222
++D+VPPF + AV+++EE+LGA + +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV
Sbjct: 96 LQDRVPPFDPKKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKV 155
Query: 223 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 282
RPGLK + DL L +IA+ ++ +D + V I + +Y E+D +EAAN
Sbjct: 156 VRPGLKPVIAQDLAWLFLIAKAAERA--SADARRLHPVEIVGDYEKTIYDELDLLREAAN 213
Query: 283 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 342
A NF+D + + VP ++W+ P++L ME + G+ + + +L + D K L V
Sbjct: 214 ASQLRRNFEDSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAERGV 273
Query: 343 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 400
E + Q+ FFHAD HPGNI V V + I D G++GS++ ++ L +
Sbjct: 274 EVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLFAF 333
Query: 401 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 460
+++D +V Q + G VP +N FE AA R T E F+K
Sbjct: 334 FKRDYRRVAQLHIDSG-WVPANTK----------VNEFE---AAIR-----TVCEPIFEK 374
Query: 461 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 520
PL K + L A + + ++G+G+ L P D+
Sbjct: 375 PL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 426
Query: 521 TEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLA----ETIQR 576
AKPY ++ R + V F NL Q +++ LA + ++R
Sbjct: 427 WSTAKPYLERWMRDRYSPKAV---------------FGNLHSQVEQLPHLAGMTRDLLER 471
Query: 577 LEQGDL 582
L Q L
Sbjct: 472 LSQPHL 477
>sp|Q1I3S8|UBIB_PSEE4 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
entomophila (strain L48) GN=ubiB PE=3 SV=1
Length = 537
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 138/426 (32%), Positives = 211/426 (49%), Gaps = 51/426 (11%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 222
++D+VPPF + AV+++EE+LGA + +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV
Sbjct: 96 LQDRVPPFDPQHAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLKSGEEVVVKV 155
Query: 223 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 282
RPGLK + DL L +IA+ ++ +D + V I + +Y E+D +EAAN
Sbjct: 156 VRPGLKPVIAQDLAWLFLIAKAAERA--SADARRLHPVEIVGDYEKTIYDELDLLREAAN 213
Query: 283 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 342
A NF+ + + VP ++W+ P++L ME + G+ + + +L + D K L V
Sbjct: 214 ASQLRRNFEGSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMATLADQRTDMKMLAERGV 273
Query: 343 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 400
E + Q+ FFHAD HPGNI V V + I D G++GS++ ++ L
Sbjct: 274 EVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAF 333
Query: 401 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 460
+++D +V Q + G VP AQ +N FE AA R T E F+K
Sbjct: 334 FKRDYRRVAQLHIDSG-WVP----------AQTKVNEFE---AAIR-----TVCEPIFEK 374
Query: 461 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 520
PL K + L A + + ++G+G+ L P D+
Sbjct: 375 PL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 426
Query: 521 TEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAET----IQR 576
AKP+ ++ R + VI NL+ QA+++ LA+ ++R
Sbjct: 427 WSTAKPFLERWMRERMSPKAVI---------------GNLYNQAEQLPHLADMTRDLLER 471
Query: 577 LEQGDL 582
L Q L
Sbjct: 472 LSQPHL 477
>sp|Q87UZ0|UBIB_PSESM Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=ubiB PE=3 SV=1
Length = 539
Score = 186 bits (472), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 123/367 (33%), Positives = 187/367 (50%), Gaps = 32/367 (8%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 222
++D+VPPF + A+ ++EE+LGA + DVF RFD P+A+AS+ QVH A LK GEEVVVKV
Sbjct: 95 LQDRVPPFDQQVAIKLIEEQLGARICDVFSRFDETPLASASVAQVHAACLKTGEEVVVKV 154
Query: 223 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 282
RPGLK + DL L ++A +++ +D V + + +Y E+D +EAAN
Sbjct: 155 VRPGLKPIIGQDLAWLFILARMAERV--SADARLLHPVQVVMDYEKTIYDELDLLREAAN 212
Query: 283 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 342
+ NF+ D + VP ++W++ P++L ME + G+++ + L + D K L V
Sbjct: 213 SSQLRRNFEGSDLLYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLADQRTDMKMLAERGV 272
Query: 343 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 400
E + QI FFHAD HPGNI V VN + I D G++GS++P ++ L +
Sbjct: 273 EIFFTQIFRDSFFHADMHPGNIFVSTVNPWAPKYIAIDCGIVGSLTPEDQDYLARNLFAF 332
Query: 401 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 460
+++D +V Q + G VP A+ LN FE AA R T E F+K
Sbjct: 333 FKRDYRRVAQLHIDSG-WVP----------AETKLNEFE---AAIR-----TVCEPIFEK 373
Query: 461 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 520
PL K + L A + + ++G+G+ L P D+
Sbjct: 374 PL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPELDL 425
Query: 521 TEIAKPY 527
A+PY
Sbjct: 426 WSTAQPY 432
>sp|Q48PJ6|UBIB_PSE14 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=ubiB PE=3 SV=1
Length = 539
Score = 185 bits (470), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 123/367 (33%), Positives = 188/367 (51%), Gaps = 32/367 (8%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 222
++D+VPPF + A++++EE+LGA + DVF RFD P+A+AS+ QVH A LK GEEVVVKV
Sbjct: 95 LQDRVPPFDQQVAINLIEEQLGARICDVFSRFDETPLASASVAQVHAACLKTGEEVVVKV 154
Query: 223 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 282
RPGLK + DL L ++A +++ +D V + + +Y E+D +EAAN
Sbjct: 155 VRPGLKPVIGQDLAWLFILARMAERV--SADARLLHPVQVVMDYEKTIYDELDLLREAAN 212
Query: 283 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 342
+ NF+ D + VP ++W++ P++L ME + G+++ + L + D K L V
Sbjct: 213 SSQLRRNFEGSDLLYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLADQRTDMKLLAERGV 272
Query: 343 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 400
E + QI FFHAD HPGNI V VN + I D G++GS++P ++ L +
Sbjct: 273 EIFFTQIFRDSFFHADMHPGNIFVSTVNPWSPKYIAIDCGIVGSLTPEDQDYLARNLFAF 332
Query: 401 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 460
+++D +V Q + G VP A+ LN FE AA R T E F+K
Sbjct: 333 FKRDYRRVAQLHIDSG-WVP----------AETKLNEFE---AAIR-----TVCEPIFEK 373
Query: 461 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 520
PL K + L A + + ++G+G+ L P D+
Sbjct: 374 PL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 425
Query: 521 TEIAKPY 527
A+PY
Sbjct: 426 WSTAQPY 432
>sp|B1J2S6|UBIB_PSEPW Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain W619) GN=ubiB PE=3 SV=1
Length = 539
Score = 185 bits (470), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 210/431 (48%), Gaps = 59/431 (13%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 222
++D+VPPF + AV+++E +LGA + +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV
Sbjct: 95 LQDRVPPFDPKQAVALIESQLGAKVGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKV 154
Query: 223 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 282
RPGLK + DL L +IA+ ++ +D + V I + +Y E+D +EAAN
Sbjct: 155 VRPGLKPVIAQDLAWLFLIAKGAERAS--ADARRLHPVEIVGDYEKTIYDELDLLREAAN 212
Query: 283 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 342
A NF+ + + VP ++W+ P++L ME + G+ + + +L + D K L V
Sbjct: 213 ASQLRRNFEGSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAERGV 272
Query: 343 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 400
E + Q+ H FFHAD HPGNI V V + I D G++GS++ ++ L
Sbjct: 273 EVFFTQVFRHSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAF 332
Query: 401 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 460
+++D +V + + G VP A +N FE AA R T E F+K
Sbjct: 333 FKRDYRRVAELHIDSG-WVP----------AHTKVNEFE---AAIR-----TVCEPIFEK 373
Query: 461 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 520
PL K + L A + + ++G+G+ L P D+
Sbjct: 374 PL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 425
Query: 521 TEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRA----FYNLFRQADRVEKLA----E 572
AKP F RW R+ + F NL+ QA+++ LA +
Sbjct: 426 WSTAKP-------------------FLERWMRERYSPKAMFGNLYSQAEQLPHLAGMTRD 466
Query: 573 TIQRLEQGDLK 583
++RL Q L
Sbjct: 467 LLERLSQPHLH 477
>sp|Q4KJL4|UBIB_PSEF5 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=ubiB PE=3
SV=1
Length = 534
Score = 185 bits (470), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 122/367 (33%), Positives = 189/367 (51%), Gaps = 32/367 (8%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 222
++D+VPPF S+ +V+++E +LG + DVF RFD+EP+A+AS+ QVH A+LK GEEVVVKV
Sbjct: 95 LQDRVPPFDSQKSVALIEAQLGKKISDVFSRFDIEPLASASVAQVHAAKLKTGEEVVVKV 154
Query: 223 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 282
RPGLK + DL L ++A +K+ +D V + + +Y E+D +EAAN
Sbjct: 155 IRPGLKPIIAQDLAWLFILARAAEKL--SADARLLHPVDVVSDYEKTIYDELDLLREAAN 212
Query: 283 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 342
A NF+ + VP ++W++ P++L ME + GI++ + +L + D K L V
Sbjct: 213 ASQLKRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGV 272
Query: 343 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 400
E + Q+ FFHAD HPGNI V V + I D G++GS++P ++ L +
Sbjct: 273 EIFFTQVFRDSFFHADMHPGNIFVSTVQPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAF 332
Query: 401 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 460
+++D +V Q + G VP A+ LN FE AA R T E F+K
Sbjct: 333 FKRDYRRVAQLHIDSG-WVP----------AETKLNEFE---AAIR-----TVCEPIFEK 373
Query: 461 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 520
PL K + L A + + ++G+G+ L P D+
Sbjct: 374 PL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 425
Query: 521 TEIAKPY 527
A+P+
Sbjct: 426 WNTAQPF 432
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 184 bits (466), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 128/383 (33%), Positives = 193/383 (50%), Gaps = 58/383 (15%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKG-----EE 217
K++D+VPPF + A +IVE LG PL +F RFD P+A+AS+ QVH A L+G E
Sbjct: 88 KLQDRVPPFDPKIAAAIVERSLGKPLSALFHRFDHHPVASASIAQVHFATLRGGPDDGRE 147
Query: 218 VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEI 274
V VKV RPG+ + D DL +R +A +++K+ +DG + R+ VA +D+ L+ E+
Sbjct: 148 VAVKVLRPGMLPVIDSDLALMRDVATWMEKL--WADGKRLKPREVVAEFDK---YLHDEL 202
Query: 275 DYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDR 334
D +EAANA NF + + VP +FW++ T ++ ME + G++++ L GVD
Sbjct: 203 DLMREAANASQLRRNFAKSELLLVPEVFWDWCTSEVFVMERMHGVRVSHADELRAAGVDT 262
Query: 335 KRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDV--NGGRLIFYDFGMMGSISPNIREG 392
+L R VE + Q+ GFFHAD HPGNI V + GR I DFG++G++S +
Sbjct: 263 HKLARDGVEIFFTQVFRDGFFHADMHPGNILVSVAPESLGRYIALDFGIVGALSEFDKNY 322
Query: 393 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREIT 452
L + F +++D +V V+ G + T V EE A R
Sbjct: 323 LAQNFLAFFQRDYHRVALLHVESGW---APEETRV-----------EELEGAIR-----A 363
Query: 453 TQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVL----- 507
E F +PL GE L + + F+ F V+ VL
Sbjct: 364 CCEPYFDRPL----------------GEISLGLVLMRLFQTSRRFNVEVQPQLVLLQKTL 407
Query: 508 ---DGIGKGLDPRFDITEIAKPY 527
+G+G+ LDP D+ + AKP+
Sbjct: 408 LNVEGLGRQLDPDLDLWKTAKPF 430
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 145/474 (30%), Positives = 233/474 (49%), Gaps = 58/474 (12%)
Query: 162 EKVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVV 220
++++D+VPPFPSE A I+E+ LGAP+ ++F F +P+A+AS+ QVH A L G++VVV
Sbjct: 89 KQLQDRVPPFPSEQARGIIEKSLGAPVSELFAEFSPDPMASASVAQVHAATLPNGQKVVV 148
Query: 221 KVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEA 280
KV RPG++ + DL + ++A L+K S+G + V + + S ++ E+D +EA
Sbjct: 149 KVLRPGIEKVIRQDLGLMYLMAGLLEKY--WSEGKRLHPVEVVADYDSTIHDELDLQREA 206
Query: 281 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY 340
ANA NF++ + +P I W+YT +L ME + GI I + +L++ GV+ + L
Sbjct: 207 ANASQLRRNFENSPLIYIPFIDWDYTRKSVLVMERIHGIPIADVPALEKAGVNMRVLAEK 266
Query: 341 AVESYLEQILSHGFFHADPHPGNIAVDDVNGG--RLIFYDFGMMGSISPNIREGLLEAFY 398
VE + Q+ FFHAD HPGNI VD N + I DFG++G+++P+ + L
Sbjct: 267 GVEIFFTQVFRDSFFHADMHPGNIFVDVSNPADPKYIAIDFGIVGTLAPDDQSYLARNLL 326
Query: 399 GIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGF 458
+ +D +V Q +Q G + P +N FE AA R T E F
Sbjct: 327 AFFRRDYRQVAQLHIQSGWVPPETR-----------VNEFE---AAIR-----TVCEPIF 367
Query: 459 KKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVL--------DGI 510
++PL + G LL + F+ F V+ VL +G+
Sbjct: 368 ERPLKD-----------ISFGHFLLRL-----FQTARRFNMEVQPQLVLLQKTLLNVEGL 411
Query: 511 GKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNR---WDRQTRAFYNLFRQADRV 567
G+ L P D+ A+P+ + ++ R G ++K +N W Q+ L A
Sbjct: 412 GRQLYPDLDLWSTAQPFLEDWMRKR-IGPSGLIKSLQNHLPSWLEQSPEMPQLVHDALLQ 470
Query: 568 EKLAETIQRLEQGDLKL-RVRTLESERAFQR-----VAAVQKTVGSAVGAGSLV 615
+ + + + L L + + L SER ++R V A VGS AG +
Sbjct: 471 IRSSGPTEAQNRATLALMKEQQLRSERRWRRGFIALVLAGAALVGSQPHAGQWL 524
>sp|C3K8U2|UBIB_PSEFS Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain SBW25) GN=ubiB PE=3 SV=1
Length = 534
Score = 182 bits (462), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 195/382 (51%), Gaps = 32/382 (8%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 222
++D+VPPF S+ ++ ++EE+LG + +VF RFDV+P+A+AS+ QVH A+LK GEEVVVKV
Sbjct: 95 LQDRVPPFDSQQSMKLIEEQLGKKISEVFSRFDVDPLASASVAQVHAAQLKTGEEVVVKV 154
Query: 223 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 282
RPGLK + DL L ++A ++ +D V + + +Y E+D +EAAN
Sbjct: 155 IRPGLKPIIGQDLAWLFILARAAERF--SADARLLHPVDVVADYEKTIYDELDLLREAAN 212
Query: 283 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 342
A NF+ + VP ++W++ P++L ME + G+++ + +L + D K L V
Sbjct: 213 ASQLKRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGVQVTDLATLADQRTDMKMLAERGV 272
Query: 343 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 400
E + Q+ FFHAD HPGNI V VN + I D G++GS++P ++ L +
Sbjct: 273 EIFFTQVFRDSFFHADMHPGNIFVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAF 332
Query: 401 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 460
+++D +V Q + G VP A+ LN FE AA R T E F+K
Sbjct: 333 FKRDYRRVAQLHIDSG-WVP----------AETKLNEFE---AAIR-----TVCEPIFEK 373
Query: 461 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 520
PL K + L A + + ++G+G+ L P D+
Sbjct: 374 PL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 425
Query: 521 TEIAKPYAMELLKFREAGVEVI 542
A+P+ ++ R + V+
Sbjct: 426 WNTAQPFLERWMRERMSPKTVL 447
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/374 (32%), Positives = 196/374 (52%), Gaps = 44/374 (11%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVK 221
K++D+VPPFPS+ + + V + LG P+++VF FD +P+A+AS+ QVH L G EV VK
Sbjct: 88 KLQDRVPPFPSDVSRAAVVQSLGRPIEEVFASFDADPVASASIAQVHFGVLHDGREVAVK 147
Query: 222 VQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQ 278
V RP + ++ + DL LRV A +L+++ P DG + R+ VA +D + L+ E+D +
Sbjct: 148 VLRPNVLNIIEADLALLRVAAAWLERLSP--DGRRLRPREVVAEFD---NYLHDELDLGR 202
Query: 279 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG 338
EAANA N +D + +P + W+ ++ ++L ME + G+ I++I++L G+D +L
Sbjct: 203 EAANAAQLRRNMGGLDLIMLPEMIWDLSSAEVLVMERMHGVPISQIETLRAAGIDIPKLA 262
Query: 339 RYAVESYLEQILSHGFFHADPHPGNIAVDDVNG--GRLIFYDFGMMGSISPNIREGLLEA 396
R V + Q+ GFFHAD HPGNI V GR I DFG++G++ +E L +
Sbjct: 263 RDGVTIFFTQVFRDGFFHADMHPGNIMVSTAPATFGRYIALDFGIVGTLDSRDKEYLAQN 322
Query: 397 FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQEL 456
F + +D +V + ++ G VP +E A R E
Sbjct: 323 FLAFFRRDYRRVAELHIESG-WVPAS-------------TRVDELEGAVR-----AVCEP 363
Query: 457 GFKKPLSKEEKIEKKKQRLAAIGEDLLAI-AADQPFRFPATFTFVVRAFSVLD--GIGKG 513
F +PL ++G+ LL + + F V+ ++L+ G+G+
Sbjct: 364 HFDRPLKD-----------ISLGQVLLRLFQTSRRFNVEIQPQLVLLQKTLLNVEGLGRQ 412
Query: 514 LDPRFDITEIAKPY 527
LDP D+ + AKP+
Sbjct: 413 LDPELDLWQTAKPF 426
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 132/400 (33%), Positives = 200/400 (50%), Gaps = 56/400 (14%)
Query: 147 EEIGKEDAWFKKSGQEKVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLG 206
E+I E W ++D+VPPF + +V+++EE+LGA +D+ F RFD EP+A+AS+
Sbjct: 87 EDIADELTW--------LQDRVPPFNPQQSVALIEEQLGARVDEAFARFDSEPLASASVA 138
Query: 207 QVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE 265
QVH A+LK GEEVVVKV RPGLK + DL L + A ++ ++ + V + +
Sbjct: 139 QVHAAQLKTGEEVVVKVVRPGLKAVIRQDLAWLYLFARLAERA--STEARRLHLVDVVSD 196
Query: 266 CASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQ 325
+Y E+D +EAANA NF+ + VP I+W++ P++L ME + G+ + +
Sbjct: 197 YEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQIYWDWCRPKVLVMERIYGVPVTDLA 256
Query: 326 SLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGG--RLIFYDFGMMG 383
+L + G D K L VE + Q+ FFHAD HPGNI V + I D G++G
Sbjct: 257 ALVDQGTDLKLLAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRQPWDPQYIAIDCGIVG 316
Query: 384 SISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLA 443
S++P ++ L +++D KV Q + G VP DT +N FE A
Sbjct: 317 SLTPQDQDYLARNLLAFFKRDYRKVAQLHIDSG-WVP-ADTQ---------VNEFE---A 362
Query: 444 AQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRA 503
A R T E F+KPL + G+ LL + F+ F V+
Sbjct: 363 AIR-----TVCEPIFEKPLKD-----------ISFGQLLLRL-----FQTARRFNMEVQP 401
Query: 504 FSVL--------DGIGKGLDPRFDITEIAKPYAMELLKFR 535
VL +G+G+ L P D+ AKP+ ++ R
Sbjct: 402 QLVLLQKTLLNIEGLGRQLYPELDLWTTAKPFLERWMRKR 441
>sp|B0KM38|UBIB_PSEPG Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain GB-1) GN=ubiB PE=3 SV=1
Length = 540
Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 124/367 (33%), Positives = 187/367 (50%), Gaps = 32/367 (8%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 222
++D+VPPF + AV+++EE+LGA + +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV
Sbjct: 96 LQDRVPPFDPQKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKV 155
Query: 223 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 282
RPGLK + DL L +IA+ ++ +D + V I + +Y E+D +EAAN
Sbjct: 156 VRPGLKPVIAQDLAWLFLIAKAAERA--SADARRLHPVEIVGDYEKTIYDELDLLREAAN 213
Query: 283 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 342
A NF+ + + VP ++W+ P++L ME + G+ + + +L + D K L V
Sbjct: 214 ASQLRRNFEGSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMVTLADQRTDMKLLAERGV 273
Query: 343 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 400
E + Q+ FFHAD HPGNI V V + I D G++GS++ ++ L
Sbjct: 274 EVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAF 333
Query: 401 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 460
+++D +V Q + G VP A +N FE AA R T E F+K
Sbjct: 334 FKRDYRRVAQLHIDSG-WVP----------AHTKVNEFE---AAIR-----TVCEPIFEK 374
Query: 461 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 520
PL K + L A + + ++G+G+ L P D+
Sbjct: 375 PL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 426
Query: 521 TEIAKPY 527
AKP+
Sbjct: 427 WSTAKPF 433
>sp|Q9PCE8|UBIB_XYLFA Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain 9a5c) GN=ubiB PE=3 SV=1
Length = 552
Score = 179 bits (455), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 147/489 (30%), Positives = 229/489 (46%), Gaps = 61/489 (12%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 222
++D+V PF +TA I+E LG ++ F FD P+A+AS+ QVH A L G EVVVKV
Sbjct: 91 LQDRVEPFEGQTARIIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDGREVVVKV 150
Query: 223 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 282
RP ++ D+ L+ +A ++ P +D + I E + L E+D +E AN
Sbjct: 151 LRPDIEHQISDDIALLKSLATLVEHTHPNADKIRP--CEIVAEIETTLAAELDLQREGAN 208
Query: 283 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 342
A + ++ D + VP + W +T Q+LT+E + GI + I LD G+DRK L +
Sbjct: 209 ASVLRRFWEASDDIYVPEVIWSHTAEQVLTLERMYGIPSDDIALLDASGIDRKALSSKGI 268
Query: 343 ESYLEQILSHGFFHADPHPGNIAVDD----VNGGRLIFYDFGMMGSISPNIREGLLEAFY 398
+ Q+ FFHAD H GNI VD + R I DFG+MG +S + L E F
Sbjct: 269 RVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFM 328
Query: 399 GIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGF 458
I+ KD ++ + V+ G + P VR EE AA R + E F
Sbjct: 329 AIFHKDYRRIAELHVEAGWIPPH-----VR---------IEELEAAAR-----SVCEPYF 369
Query: 459 KKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRF 518
+PLS+ LA + L +A + + ++G+G+ LDP
Sbjct: 370 TRPLSQIS--------LAEVLMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPEL 421
Query: 519 DITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAET--IQR 576
DI +A+P +L+ R + LK+ R + A +L T +Q+
Sbjct: 422 DIWVVARPVLERILRARYSPRHA-LKELNKR-------LPEIMTHAPDTPRLIHTWLVQQ 473
Query: 577 LE---QGDLKL-RVRTLE-SERAFQRVAAVQKTVGSAVGAGSLVNLATI-------LYLN 624
+E Q D+ L ++R L + + QR + V + VG+G LV A + LYL
Sbjct: 474 VESRKQNDVYLQQIRALAMTLQGLQR-----RVVNAIVGSGLLVAAAVLYGLHPDGLYLG 528
Query: 625 SIRVPAILA 633
+I V ++++
Sbjct: 529 AIPVWSLIS 537
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 179 bits (453), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 122/390 (31%), Positives = 204/390 (52%), Gaps = 39/390 (10%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVK 221
K++D+VPPF + + +E+ LG ++ ++ F+ EPIA+AS+ QVH+ARL GE+V VK
Sbjct: 89 KLQDKVPPFDARLSREQIEKSLGQSIEKLYAEFETEPIASASIAQVHKARLHSGEQVAVK 148
Query: 222 VQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQ 278
V RP L + + DL +R A +++++ +DG + R+ VA +D+ L+ E+D +
Sbjct: 149 VLRPNLLPVIEQDLSLMRFGAGWVERL--FADGKRLKPREVVAEFDK---YLHDELDLMR 203
Query: 279 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG 338
EAANA NF++ D + VP +F++Y T +LT+E++ G ++ I L G+D +L
Sbjct: 204 EAANASQLGRNFQNSDMLIVPKVFYDYCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLA 263
Query: 339 RYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFY 398
Y VE + Q+ GFFHAD HPGNI V N R I DFG++G+++ + L F
Sbjct: 264 DYGVEIFFTQVFRDGFFHADMHPGNILVAADN--RYIALDFGIVGTLTDYDKRYLAINFL 321
Query: 399 GIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGF 458
+ +D +V A ++ G VP DT A EE AA R E F
Sbjct: 322 AFFNRDYRRVATAHIESG-WVP-ADTRA------------EELEAAVR-----AVCEPVF 362
Query: 459 KKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRF 518
KP+S+ + L ++ + + ++G+G+ LDP
Sbjct: 363 NKPISQIS--------FGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPDL 414
Query: 519 DITEIAKPYAMELLKFREAGVEVILKDFRN 548
D+ + AKP+ ++ + + G + + ++ +N
Sbjct: 415 DLWKTAKPFLVKWMN-GQVGPKALWRNLKN 443
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/387 (31%), Positives = 197/387 (50%), Gaps = 33/387 (8%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVK 221
K++D+VPPF + + +E+ LG ++ ++ F+ EPIA+AS+ QVH+ARL GE V VK
Sbjct: 89 KLQDKVPPFDARLSREQIEKSLGQSIEKLYAEFETEPIASASIAQVHKARLHSGERVAVK 148
Query: 222 VQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAA 281
V RP L L + DL +R A +++++ SDG + + + E L+ E+D +EAA
Sbjct: 149 VLRPNLLPLIEQDLSLMRFGAAWVERL--FSDGRRLKPLEVVAEFDKYLHDELDLMREAA 206
Query: 282 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA 341
NA NF + + + VP +F++Y T +LT+E++ G + I L G+D +L Y
Sbjct: 207 NAGQLGRNFHNSNMLIVPKVFYDYCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYG 266
Query: 342 VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIY 401
VE + Q+ GFFHAD HPGNI V N R I DFG++G+++ + L F +
Sbjct: 267 VEIFFTQVFRDGFFHADMHPGNILVAADN--RYIALDFGIVGTLTDYDKRYLAINFLAFF 324
Query: 402 EKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKP 461
+D +V A ++ G VP DT A EE AA R E F KP
Sbjct: 325 NRDYRRVATAHIESG-WVP-ADTRA------------EELEAAVR-----AVCEPVFNKP 365
Query: 462 LSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDIT 521
+S+ + L ++ + + ++G+G+ LDP D+
Sbjct: 366 ISQIS--------FGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLW 417
Query: 522 EIAKPYAMELLKFREAGVEVILKDFRN 548
+ AKP+ ++ + + G + + ++ +N
Sbjct: 418 KTAKPFLVKWMN-GQVGPKALWRNLKN 443
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 185/371 (49%), Gaps = 36/371 (9%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEE-----V 218
++D+VPPFPS A++ +E P+ DVF +FD PIA+AS+ QVH A ++ +E V
Sbjct: 89 LQDRVPPFPSAVAIATIERAFRRPVGDVFVQFDETPIASASIAQVHFATIRTDEGEVREV 148
Query: 219 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQ 278
VKV RP ++ + + DL + ++A +++K+ P DG + + E L+ E+D +
Sbjct: 149 AVKVLRPSMRGVIEKDLALMAMMAGWVEKLSP--DGKRLKPREVVGEFDKYLHDELDLVR 206
Query: 279 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG 338
EAANA N ++ V +P +FW++ P+++ ME + G+ I ++ L GVD +L
Sbjct: 207 EAANAAQLRRNMASLELVLIPEMFWDFCHPEVIVMERMNGVPIAQLDRLRAAGVDIPKLA 266
Query: 339 RYAVESYLEQILSHGFFHADPHPGNIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEA 396
R V + Q+ GFFHAD HPGNI V GR I DFG++G+++ + +E L +
Sbjct: 267 RDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGRYISLDFGIIGTLTESDKEYLAQN 326
Query: 397 FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQEL 456
F + +D +V + ++ G VP G +E A R T E
Sbjct: 327 FVAFFRRDYKRVAELHLESG-WVPEG-------------TRIDELEGAIR-----TVCEP 367
Query: 457 GFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDP 516
F +PL K+ L + L + + + ++G+G+ LDP
Sbjct: 368 YFDRPL--------KEISLGMVLMRLFQTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDP 419
Query: 517 RFDITEIAKPY 527
D+ AKP+
Sbjct: 420 ELDLWHTAKPF 430
>sp|Q87CN1|UBIB_XYLFT Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1
Length = 552
Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 147/490 (30%), Positives = 231/490 (47%), Gaps = 63/490 (12%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEE-VVVKV 222
++D+V PF +TA SI+E LG ++ F FD P+A+AS+ QVH A L VVVKV
Sbjct: 91 LQDRVEPFEGQTARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRRAVVVKV 150
Query: 223 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK-RDWVAIYDECASVLYQEIDYTQEAA 281
RP ++ D+ L+ +A ++ P +D + R+ VA E + L E+D +E A
Sbjct: 151 LRPDIEHQISDDIALLKSLATLVEHTHPNADKIRPREIVA---EIETTLAAELDLQREGA 207
Query: 282 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA 341
NA + ++ D + VP + W +T ++LT+E + GI + I LD G+DRK L
Sbjct: 208 NASVLRRFWEASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKG 267
Query: 342 VESYLEQILSHGFFHADPHPGNIAVDD----VNGGRLIFYDFGMMGSISPNIREGLLEAF 397
+ + Q+ FFHAD H GNI VD + R I DFG+MG +S + L E F
Sbjct: 268 IRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENF 327
Query: 398 YGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELG 457
I+ KD ++ + V+ G + P VR EE AA R + E
Sbjct: 328 MAIFHKDYRRIAELHVEAGWIPPH-----VR---------IEELEAAAR-----SVCEPY 368
Query: 458 FKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPR 517
F +PLS+ LA + L +A + + ++G+G+ LDP
Sbjct: 369 FTRPLSQIS--------LAEVMMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPE 420
Query: 518 FDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAET--IQ 575
DI +A+P +L+ R + LK+ R + A +L T +Q
Sbjct: 421 LDIWVVARPVLERILRARYSPRHA-LKELNKR-------LPEIMTHAPDTPRLIHTWLVQ 472
Query: 576 RLE---QGDLKL-RVRTLE-SERAFQRVAAVQKTVGSAVGAGSLVNLATI-------LYL 623
++E Q D+ L ++R L + + QR + V + VG+G LV A + LYL
Sbjct: 473 QVESRKQNDVYLQQIRALAMTLQGLQR-----RVVNAIVGSGLLVAAAVLYGLHPDGLYL 527
Query: 624 NSIRVPAILA 633
+I V ++++
Sbjct: 528 GTIPVWSLIS 537
>sp|B2I583|UBIB_XYLF2 Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M23) GN=ubiB PE=3 SV=1
Length = 552
Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 147/490 (30%), Positives = 231/490 (47%), Gaps = 63/490 (12%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEE-VVVKV 222
++D+V PF +TA SI+E LG ++ F FD P+A+AS+ QVH A L VVVKV
Sbjct: 91 LQDRVEPFEGQTARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRRAVVVKV 150
Query: 223 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK-RDWVAIYDECASVLYQEIDYTQEAA 281
RP ++ D+ L+ +A ++ P +D + R+ VA E + L E+D +E A
Sbjct: 151 LRPDIEHQISDDIALLKSLATLVEHTHPNADKIRPREIVA---EIETTLAAELDLQREGA 207
Query: 282 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA 341
NA + ++ D + VP + W +T ++LT+E + GI + I LD G+DRK L
Sbjct: 208 NASVLRRFWEASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKG 267
Query: 342 VESYLEQILSHGFFHADPHPGNIAVDD----VNGGRLIFYDFGMMGSISPNIREGLLEAF 397
+ + Q+ FFHAD H GNI VD + R I DFG+MG +S + L E F
Sbjct: 268 IRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENF 327
Query: 398 YGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELG 457
I+ KD ++ + V+ G + P VR EE AA R + E
Sbjct: 328 MAIFHKDYRRIAELHVEAGWIPPH-----VR---------IEELEAAAR-----SVCEPY 368
Query: 458 FKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPR 517
F +PLS+ LA + L +A + + ++G+G+ LDP
Sbjct: 369 FTRPLSQIS--------LAEVMMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPE 420
Query: 518 FDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAET--IQ 575
DI +A+P +L+ R + LK+ R + A +L T +Q
Sbjct: 421 LDIWVVARPVLERILRARYSPRHA-LKELNKR-------LPEIMTHAPDTPRLIHTWLVQ 472
Query: 576 RLE---QGDLKL-RVRTLE-SERAFQRVAAVQKTVGSAVGAGSLVNLATI-------LYL 623
++E Q D+ L ++R L + + QR + V + VG+G LV A + LYL
Sbjct: 473 QVESRKQNDVYLQQIRALAMTLQGLQR-----RVVNAIVGSGLLVAAAVLYGLHPDGLYL 527
Query: 624 NSIRVPAILA 633
+I V ++++
Sbjct: 528 GTIPVWSLIS 537
>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
(strain TPSY) GN=ubiB PE=3 SV=1
Length = 521
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 196/391 (50%), Gaps = 37/391 (9%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEEV 218
++D+VPPF + A++ +E P+ +VF FD +P+A+AS+ QVH A ++ EV
Sbjct: 89 LQDRVPPFDPDVAIATIERAFRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREV 148
Query: 219 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQ 278
VKV RPG+ + D DL +R++A +++ + +DG + + E + L+ E+D +
Sbjct: 149 AVKVLRPGMLPVIDKDLALMRMMAGWVESL--SADGKRLKPREVVAEFDNYLHDELDLVR 206
Query: 279 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG 338
EAANA N + +D V +P +FW++ ++L ME + G+ IN+++ L GVD +L
Sbjct: 207 EAANAAQLRRNMQGLDLVLIPEVFWDFCHAEVLVMERMKGVPINQVERLRSAGVDIPKLA 266
Query: 339 RYAVESYLEQILSHGFFHADPHPGNIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEA 396
R V + Q+ GFFHAD HPGNI V GR I DFG++G+++ +E L +
Sbjct: 267 RDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQN 326
Query: 397 FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQEL 456
F + +D +V + ++ G VP A +N E AA R T E
Sbjct: 327 FTAFFRRDYKRVAELHIESG-WVP----------AHTRVNELE---AAIR-----TVCEP 367
Query: 457 GFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDP 516
F +PL K+ L + L + + + ++G+G+ LDP
Sbjct: 368 YFDRPL--------KEISLGMVLLRLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDP 419
Query: 517 RFDITEIAKPYAMELLKFREAGVEVILKDFR 547
D+ AKP+ +E + G + + ++ R
Sbjct: 420 DLDLWSTAKPF-LEKWMLDQLGPQRLWRELR 449
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 211/437 (48%), Gaps = 53/437 (12%)
Query: 147 EEIGKEDAWFKKSGQEKVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLG 206
++I E AW ++D+VPPFP E AV +EE+LGA ++ VF RF+ EP+A+AS+
Sbjct: 87 DDIANELAW--------LQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVA 138
Query: 207 QVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE 265
QVH ARLK GEEVVVKV RP L+ + D+ L ++A +++ S+ + V + +
Sbjct: 139 QVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAERVS--SEARRLHPVEVVSD 196
Query: 266 CASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQ 325
+ E+D +EAANA NF+ + VP ++W++ P++L ME + GI + ++
Sbjct: 197 YEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLE 256
Query: 326 SLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDD--VNGGRLIFYDFGMMG 383
+L + D K L VE + Q+ FFHAD HPGNI V + I D G++G
Sbjct: 257 TLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVG 316
Query: 384 SISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLA 443
S++ ++ L +++D KV Q + G VP A+ +N FE A
Sbjct: 317 SLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSG-WVP----------AETKVNDFE---A 362
Query: 444 AQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRA 503
A R T E F+KPL K + L A + +
Sbjct: 363 AIR-----TVCEPIFEKPL--------KDISFGQVLLRLFQTARRFNMEIQPQLVLLQKT 409
Query: 504 FSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQ 563
++G+G+ L P D+ A+P+ ++ R + +++ R F Q
Sbjct: 410 LLNIEGLGRQLYPELDLWATAQPFLERWMRERVSPKQLL------------RNFQQQVEQ 457
Query: 564 ADRVEKLA-ETIQRLEQ 579
+ ++A +T++RL Q
Sbjct: 458 VPHLSQMARDTLERLSQ 474
>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
(strain JS42) GN=ubiB PE=3 SV=1
Length = 521
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 195/391 (49%), Gaps = 37/391 (9%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEEV 218
++D+VPPF + A++ +E P+ +VF FD +P+A+AS+ QVH A ++ EV
Sbjct: 89 LQDRVPPFDPDVAIATIERAFRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREV 148
Query: 219 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQ 278
VKV RPG+ + D DL +R++A +++ + +DG + + E + L+ E+D +
Sbjct: 149 AVKVLRPGMLPVIDKDLALMRMMAGWVESL--SADGKRLKPREVVAEFDNYLHDELDLVR 206
Query: 279 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG 338
EAANA N + +D V +P +FW++ ++L ME + G+ IN++ L GVD +L
Sbjct: 207 EAANAAQLRRNMQGLDLVLIPEVFWDFCHAEVLVMERMKGVPINQVDRLRSAGVDIPKLA 266
Query: 339 RYAVESYLEQILSHGFFHADPHPGNIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEA 396
R V + Q+ GFFHAD HPGNI V GR I DFG++G+++ +E L +
Sbjct: 267 RDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQN 326
Query: 397 FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQEL 456
F + +D +V + ++ G VP A +N E AA R T E
Sbjct: 327 FTAFFRRDYKRVAELHIESG-WVP----------AHTRVNELE---AAIR-----TVCEP 367
Query: 457 GFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDP 516
F +PL K+ L + L + + + ++G+G+ LDP
Sbjct: 368 YFDRPL--------KEISLGMVLLRLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDP 419
Query: 517 RFDITEIAKPYAMELLKFREAGVEVILKDFR 547
D+ AKP+ +E + G + + ++ R
Sbjct: 420 DLDLWSTAKPF-LEKWMLDQLGPQRLWRELR 449
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 130/421 (30%), Positives = 208/421 (49%), Gaps = 63/421 (14%)
Query: 163 KVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVK 221
+++DQVPPFP + A++++E +LGAP+ +F RFD +P+A+AS+ QVH A+LK GEEVVVK
Sbjct: 94 RLQDQVPPFPEDQAIALIERQLGAPVSQLFARFDSQPLASASVAQVHAAQLKSGEEVVVK 153
Query: 222 VQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAA 281
V RPGLK + DL L ++A ++ +D + V + + ++ E+D +EAA
Sbjct: 154 VVRPGLKPVIRQDLAWLFLLARIAERA--SADARRLRPVEVVSDYEKTIFDELDLLREAA 211
Query: 282 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA 341
NA NF+ + VP ++W+ Q+L ME + G+ + + +L + D K L
Sbjct: 212 NASQLRRNFEGSPLLYVPQVYWDLCRHQVLVMERIYGVPVTDLATLADQRTDMKLLAERG 271
Query: 342 VESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYG 399
VE + Q+ FFHAD HPGNI V + I D G++GS++ ++ L
Sbjct: 272 VEIFFTQVFRDSFFHADMHPGNIFVSTRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIA 331
Query: 400 IYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFK 459
+++D KV Q + G VP DT +N FE AA R T E F+
Sbjct: 332 FFKRDYRKVAQLHIDSG-WVP-ADTK---------VNEFE---AAIR-----TVCEPIFE 372
Query: 460 KPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVL--------DGIG 511
KPL + G+ LL + F+ F V+ VL +G+G
Sbjct: 373 KPLKD-----------ISFGQLLLRL-----FQTARRFNMEVQPQLVLLQKTLLNIEGLG 416
Query: 512 KGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLA 571
+ L P D+ A+P+ ++ R + + ++ NL +QA++V L+
Sbjct: 417 RQLYPDLDLWSTAQPFLERWMRERVSPLHLL---------------RNLQQQAEQVPHLS 461
Query: 572 E 572
+
Sbjct: 462 Q 462
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 211/437 (48%), Gaps = 53/437 (12%)
Query: 147 EEIGKEDAWFKKSGQEKVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLG 206
++I E AW ++D+VPPFP E AV +EE+LGA ++ VF RF+ EP+A+AS+
Sbjct: 87 DDIANELAW--------LQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVA 138
Query: 207 QVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE 265
QVH ARLK GEEVVVKV RP L+ + D+ L ++A +++ S+ + V + +
Sbjct: 139 QVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAERVS--SEARRLHPVEVVSD 196
Query: 266 CASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQ 325
+ E+D +EAANA NF+ + VP ++W++ P++L ME + GI + ++
Sbjct: 197 YEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLE 256
Query: 326 SLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDD--VNGGRLIFYDFGMMG 383
+L + D K L VE + Q+ FFHAD HPGNI V + I D G++G
Sbjct: 257 TLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVG 316
Query: 384 SISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLA 443
S++ ++ L +++D KV Q + G VP A+ +N FE A
Sbjct: 317 SLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSG-WVP----------AETKVNDFE---A 362
Query: 444 AQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRA 503
A R T E F+KPL K + L A + +
Sbjct: 363 AIR-----TVCEPIFEKPL--------KDISFGQVLLRLFQTARRFNMEIQPQLVLLQKT 409
Query: 504 FSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQ 563
++G+G+ L P D+ A+P+ ++ R + +++ R F Q
Sbjct: 410 LLNIEGLGRQLYPELDLWATAQPFLERWMRERVSPKQLL------------RNFQQQVEQ 457
Query: 564 ADRVEKLA-ETIQRLEQ 579
+ ++A +T++RL Q
Sbjct: 458 VPHLSQMARDTLERLSQ 474
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 211/437 (48%), Gaps = 53/437 (12%)
Query: 147 EEIGKEDAWFKKSGQEKVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLG 206
++I E AW ++D+VPPFP E AV +EE+LGA ++ VF RF+ EP+A+AS+
Sbjct: 87 DDIANELAW--------LQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVA 138
Query: 207 QVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE 265
QVH ARLK GEEVVVKV RP L+ + D+ L ++A +++ S+ + V + +
Sbjct: 139 QVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAERVS--SEARRLHPVEVVSD 196
Query: 266 CASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQ 325
+ E+D +EAANA NF+ + VP ++W++ P++L ME + GI + ++
Sbjct: 197 YEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLE 256
Query: 326 SLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDD--VNGGRLIFYDFGMMG 383
+L + D K L VE + Q+ FFHAD HPGNI V + I D G++G
Sbjct: 257 TLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVG 316
Query: 384 SISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLA 443
S++ ++ L +++D KV Q + G VP A+ +N FE A
Sbjct: 317 SLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSG-WVP----------AETKVNDFE---A 362
Query: 444 AQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRA 503
A R T E F+KPL K + L A + +
Sbjct: 363 AIR-----TVCEPIFEKPL--------KDISFGQVLLRLFQTARRFNMEIQPQLVLLQKT 409
Query: 504 FSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQ 563
++G+G+ L P D+ A+P+ ++ R + +++ R F Q
Sbjct: 410 LLNIEGLGRQLYPELDLWATAQPFLERWMRERVSPKQLL------------RNFQQQVEQ 457
Query: 564 ADRVEKLA-ETIQRLEQ 579
+ ++A +T++RL Q
Sbjct: 458 VPHLSQMARDTLERLSQ 474
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 211/437 (48%), Gaps = 53/437 (12%)
Query: 147 EEIGKEDAWFKKSGQEKVEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLG 206
++I E AW ++D+VPPFP E AV +EE+LGA ++ VF RF+ EP+A+AS+
Sbjct: 87 DDIANELAW--------LQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVA 138
Query: 207 QVHRARLK-GEEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDE 265
QVH ARLK GEEVVVKV RP L+ + D+ L ++A +++ S+ + V + +
Sbjct: 139 QVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAERVS--SEARRLHPVEVVSD 196
Query: 266 CASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQ 325
+ E+D +EAANA NF+ + VP ++W++ P++L ME + GI + ++
Sbjct: 197 YEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLE 256
Query: 326 SLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDD--VNGGRLIFYDFGMMG 383
+L + D K L VE + Q+ FFHAD HPGNI V + I D G++G
Sbjct: 257 TLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVG 316
Query: 384 SISPNIREGLLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLA 443
S++ ++ L +++D KV Q + G VP A+ +N FE A
Sbjct: 317 SLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSG-WVP----------AETKVNDFE---A 362
Query: 444 AQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRA 503
A R T E F+KPL K + L A + +
Sbjct: 363 AIR-----TVCEPIFEKPL--------KDISFGQVLLRLFQTARRFNMEIQPQLVLLQKT 409
Query: 504 FSVLDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQ 563
++G+G+ L P D+ A+P+ ++ R + +++ R F Q
Sbjct: 410 LLNIEGLGRQLYPELDLWATAQPFLERWMRERVSPKQLL------------RNFQQQVEQ 457
Query: 564 ADRVEKLA-ETIQRLEQ 579
+ ++A +T++RL Q
Sbjct: 458 VPHLSQMARDTLERLSQ 474
>sp|B0U2R2|UBIB_XYLFM Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M12) GN=ubiB PE=3 SV=1
Length = 552
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 147/490 (30%), Positives = 231/490 (47%), Gaps = 63/490 (12%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGE-EVVVKV 222
++D+V PF +TA I+E LG ++ F FD P+A+AS+ QVH A L EVVVKV
Sbjct: 91 LQDRVEPFEGQTARIIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRREVVVKV 150
Query: 223 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK-RDWVAIYDECASVLYQEIDYTQEAA 281
RP ++ D+ L+ +A ++ P +D + R+ VA E + L E+D +E A
Sbjct: 151 LRPDIEHQISDDIALLKSLATLVEHTHPNADKIRPREIVA---EIETTLAAELDLQREGA 207
Query: 282 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA 341
NA + ++ D + VP + W +T ++LT+E + GI + I LD G+DRK L
Sbjct: 208 NASVLRRFWEASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKG 267
Query: 342 VESYLEQILSHGFFHADPHPGNIAVDD----VNGGRLIFYDFGMMGSISPNIREGLLEAF 397
+ + Q+ FFHAD H GNI VD + R I DFG+MG +S + L E F
Sbjct: 268 IRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENF 327
Query: 398 YGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELG 457
I+ KD ++ + V+ G +P VR EE AA R + E
Sbjct: 328 MAIFHKDYRRIAELHVEAG-WIPQH----VR---------IEELEAAAR-----SVCEPY 368
Query: 458 FKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPR 517
F +PLS+ LA + L +A + + ++G+G+ LDP
Sbjct: 369 FTRPLSQIS--------LAEVLMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPE 420
Query: 518 FDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAET--IQ 575
DI +A+P +L+ R + LK+ R + A +L T +Q
Sbjct: 421 LDIWVVARPVLERILRARYSPRHA-LKELNKR-------LPEIMTHAPDTPRLIHTWLVQ 472
Query: 576 RLE---QGDLKL-RVRTLE-SERAFQRVAAVQKTVGSAVGAGSLVNLATI-------LYL 623
++E Q D+ L ++R L + + QR + V + VG+G LV A + LYL
Sbjct: 473 QVESRKQNDVYLQQIRALAMTLQGLQR-----RVVNAIVGSGLLVAAAVLYGLHPDGLYL 527
Query: 624 NSIRVPAILA 633
+I V ++++
Sbjct: 528 GTIPVWSLIS 537
>sp|B0RLZ0|UBIB_XANCB Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain B100) GN=ubiB PE=3
SV=1
Length = 557
Score = 172 bits (437), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 139/471 (29%), Positives = 220/471 (46%), Gaps = 50/471 (10%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGE------E 217
++D+V PF E A IVE LG P+ F FD P+A+AS+ QVH A L + E
Sbjct: 91 LQDRVKPFDGEAARLIVERALGLPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRRE 150
Query: 218 VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK-RDWVAIYDECASVLYQEIDY 276
VVVKV RP ++ D D+ L +A +++ P++D + R+ VA E L E+D
Sbjct: 151 VVVKVLRPDIERQIDADIALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDL 207
Query: 277 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR 336
+E ANA + ++ D + VP + W +T + LT+E V GI + + LD G+DRK
Sbjct: 208 QREGANASVLRRFWEGSDDLYVPEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKA 267
Query: 337 LGRYAVESYLEQILSHGFFHADPHPGNIAVDD----VNGGRLIFYDFGMMGSISPNIREG 392
L V + Q+ FFHAD H GNI VD R I DFG+MG +S +
Sbjct: 268 LAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERCLNPRFIALDFGIMGQLSQEDQYY 327
Query: 393 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREIT 452
L E F I+ KD ++ + V+ G + + VR +E AA R +
Sbjct: 328 LAENFMAIFHKDYRRMAELHVEAGWM-----PSNVR---------IDELEAAAR-----S 368
Query: 453 TQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGK 512
E F +PLS+ LA + L +A + + ++G+G+
Sbjct: 369 VCEPYFTRPLSEIS--------LAEVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGR 420
Query: 513 GLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAE 572
LDP+ DI +A+P +L+ R + V L + R R + A + +L
Sbjct: 421 QLDPKLDIWAVARPVLERILRERYSPRRV-LGELRKR-------LPEIMTHAPDMPRLVH 472
Query: 573 T-IQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILY 622
+ +++ +G +L +R+ E + +Q V +A+ L+ +A +LY
Sbjct: 473 SWLKQQVEGRHQLDIRSSELRALDLSLRKLQTRVVTAITGSGLLVVAAVLY 523
>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax
citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1
Length = 522
Score = 172 bits (436), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 115/371 (30%), Positives = 186/371 (50%), Gaps = 36/371 (9%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGE-----EV 218
++D+VPPF + AV+ +E P+ +VF F+ P+A+AS+ QVH A ++ EV
Sbjct: 89 LQDRVPPFDPDVAVATIERAFRRPVGEVFVSFERVPVASASIAQVHFAIVRDRHGVEREV 148
Query: 219 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQ 278
VKV RPG+ + D DL +R +A +++ + +DG + + E + L+ E+D +
Sbjct: 149 AVKVLRPGMLPVIDNDLGLMRAMAGWVESL--SADGKRLKPRQVVAEFDNYLHDELDLIR 206
Query: 279 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG 338
EAANA N + + V++P I W++ P++L ME + G+ I++I+ L GVD ++L
Sbjct: 207 EAANAAQLRRNMERLGLVRIPEILWDFCHPEVLVMERMKGVPISQIERLRAAGVDIRQLA 266
Query: 339 RYAVESYLEQILSHGFFHADPHPGNIAVDDVNG--GRLIFYDFGMMGSISPNIREGLLEA 396
R V + Q+ GFFHAD HPGNI V G GR I DFG++GS++ +E L +
Sbjct: 267 RDGVTIFFTQVFRDGFFHADMHPGNIQVSLEPGSFGRYISLDFGIVGSLTEFDKEYLAQN 326
Query: 397 FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQEL 456
F + +D +V + V+ G VP DT +N E + A E
Sbjct: 327 FTAFFRRDYKRVAELHVESG-WVP-ADTR---------INELESAIRA--------VCEP 367
Query: 457 GFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDP 516
F +PL K+ L + L + + + ++G+G+ LDP
Sbjct: 368 YFDRPL--------KEISLGMVLMRLFQTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDP 419
Query: 517 RFDITEIAKPY 527
D+ AKP+
Sbjct: 420 ELDLWSTAKPF 430
>sp|Q8PDW1|UBIB_XANCP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=ubiB PE=3 SV=1
Length = 557
Score = 172 bits (435), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 140/471 (29%), Positives = 221/471 (46%), Gaps = 50/471 (10%)
Query: 164 VEDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGE------E 217
++D+V PF E A IVE LG P+ F FD P+A+AS+ QVH A L + E
Sbjct: 91 LQDRVKPFDGEAARLIVERALGLPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRRE 150
Query: 218 VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK-RDWVAIYDECASVLYQEIDY 276
VVVKV RP ++ D D+ L +A +++ P++D + R+ VA E L E+D
Sbjct: 151 VVVKVLRPDIERQIDADIALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDL 207
Query: 277 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR 336
+E ANA + ++ D + VP + W +T + LT+E V GI + + LD G+DRK
Sbjct: 208 QREGANASVLRRFWEGSDDLYVPEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKA 267
Query: 337 LGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRL----IFYDFGMMGSISPNIREG 392
L V + Q+ FFHAD H GNI VD RL I DFG+MG +S +
Sbjct: 268 LAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYY 327
Query: 393 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREIT 452
L E F I+ KD ++ + V+ G + + VR +E AA R +
Sbjct: 328 LAENFMAIFHKDYRRMAELHVEAGWM-----PSNVR---------IDELEAAAR-----S 368
Query: 453 TQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGK 512
E F +PLS+ LA + L +A + + ++G+G+
Sbjct: 369 VCEPYFTRPLSEIS--------LAEVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGR 420
Query: 513 GLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAE 572
LDP+ DI +A+P +L+ R + V L + R R + A + +L
Sbjct: 421 QLDPKLDIWAVARPVLERILRERYSPRRV-LGELRKR-------LPEIMTHAPDMPRLVH 472
Query: 573 T-IQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILY 622
+ +++ +G +L +R+ E + +Q V +A+ L+ +A +LY
Sbjct: 473 SWLKQQVEGRHQLDIRSSELRALDLSLRKLQTRVVTAITGSGLLVVAAVLY 523
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 245,457,373
Number of Sequences: 539616
Number of extensions: 11054837
Number of successful extensions: 43233
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 42225
Number of HSP's gapped (non-prelim): 619
length of query: 665
length of database: 191,569,459
effective HSP length: 124
effective length of query: 541
effective length of database: 124,657,075
effective search space: 67439477575
effective search space used: 67439477575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)