BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006003
(665 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LL84|DNLI4_ARATH DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1
Length = 1219
Score = 1117 bits (2890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/662 (82%), Positives = 605/662 (91%), Gaps = 5/662 (0%)
Query: 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSY 63
TEE + VLVSLFNWIQK+K +++KRSKFRKFLDTYC DYF A+RLI+PSLDRERGSY
Sbjct: 2 TEEIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPSLDRERGSY 61
Query: 64 GLKESVLANCLIDALGMSKDSADAVRLINWRKGG---AAPNAGNFPMVAAEVLQRRQGMI 120
GLKESVLA CLIDALG+S+D+ DAVRL+NWRKGG A NAGNF ++AAEVLQRRQGM
Sbjct: 62 GLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGMA 121
Query: 121 SGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
SGGLTIKELNDLLDRLASSENRAEK VLSTLI+KTNAQEMKW+I IILKDLKLG+SEKS
Sbjct: 122 SGGLTIKELNDLLDRLASSENRAEKTLVLSTLIQKTNAQEMKWVIRIILKDLKLGMSEKS 181
Query: 181 IFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWR 240
IF EFHPDAEDLFNVTCDLKLVCEKL+DR+QRHKRQDIEVGKAVRPQLAMRIGD +AAW+
Sbjct: 182 IFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRIGDVNAAWK 241
Query: 241 KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILD 300
KLHGK+VV ECKFDGDRIQIHKNG++IHYFSR+FLDHSEY HAMS +I QN+LVD+CILD
Sbjct: 242 KLHGKDVVAECKFDGDRIQIHKNGTDIHYFSRNFLDHSEYAHAMSDLIVQNILVDKCILD 301
Query: 301 GEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERH 360
GEMLVWDTSLNRFAEFGSNQEIAKAAR+GL S +QLCY AFDVLYVGDTSVIHQSLKERH
Sbjct: 302 GEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHKQLCYVAFDVLYVGDTSVIHQSLKERH 361
Query: 361 ELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGI 420
ELL+KVVKP KGRLE LVP+ GLN H RP GEP WS+V H +VE+FFKET+ENRDEGI
Sbjct: 362 ELLKKVVKPLKGRLEVLVPEGGLNVH-RPSGEPSWSIVVHAAADVERFFKETVENRDEGI 420
Query: 421 VLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAER 480
VLKDL SKWEPGDRSGKW+KLKPEYIRAG+DLDVLIIGGYYGSGRRGGEVAQFLVALA+R
Sbjct: 421 VLKDLESKWEPGDRSGKWMKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALADR 480
Query: 481 PAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERP 540
+ YPRRF+SFCRVGTGLSD+EL+ VV+KLKPYFRK E+PK+APPSFYQVTN+SKERP
Sbjct: 481 AEANVYPRRFMSFCRVGTGLSDDELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERP 540
Query: 541 DVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELV 600
DVWI+SPEKSIILSITSDIRTIRSEVF APYSLRFPRID+VRYDKPWH+CLDVQ+FVELV
Sbjct: 541 DVWIDSPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELV 600
Query: 601 HSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDM 660
+SSNGTTQK KE QD+ PK +SS++GEKKNVS+VPS F+QTDVSDIKG+TSIFS+M
Sbjct: 601 NSSNGTTQKQKESESTQDN-PKVNKSSKRGEKKNVSLVPSQFIQTDVSDIKGKTSIFSNM 659
Query: 661 VF 662
+F
Sbjct: 660 IF 661
>sp|Q7X7E9|DNLI4_ORYSJ Putative DNA ligase 4 OS=Oryza sativa subsp. japonica GN=LIG4 PE=2
SV=2
Length = 1322
Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/701 (65%), Positives = 537/701 (76%), Gaps = 101/701 (14%)
Query: 11 VLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSV---DYFSALRLILPSLDRERGSYGLKE 67
+LV++F + + + AAKKR++ R LD DYFSALRL+LP LDRERGSYGLKE
Sbjct: 9 LLVAMFQAMSRDRTAAKKRARLRALLDRAYGPGGRDDYFSALRLVLPGLDRERGSYGLKE 68
Query: 68 SVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGGLTIK 127
+ LA+ L+DALG++KDS DAVRL NWR+GG NAGNF +VAAEVLQRRQGM SGGLTIK
Sbjct: 69 AALASVLVDALGIAKDSPDAVRLTNWRRGGGFRNAGNFALVAAEVLQRRQGMTSGGLTIK 128
Query: 128 ELNDLLDRLASSEN--------------RAEKISVLSTLIKKTNAQEMKWIIMIILKDLK 173
E+ND LDRLA++EN R+EK S+LS+LIKKTNA EMKW++MIILKDLK
Sbjct: 129 EVNDALDRLAATENSVCLESEKLLLILDRSEKASILSSLIKKTNALEMKWLLMIILKDLK 188
Query: 174 LGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIG 233
LGISEKS+FHEFHPDAEDLFNVTCDL+LVCEKL DR+QRHKRQDIEVGKAVRPQL+MR+
Sbjct: 189 LGISEKSVFHEFHPDAEDLFNVTCDLRLVCEKLNDRSQRHKRQDIEVGKAVRPQLSMRVN 248
Query: 234 DAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVL 293
+A +AW+KLHGK+VV ECKFDGDRIQIHKNG EIH+FSRSFLDHSEY MSK+I +N+L
Sbjct: 249 NASSAWKKLHGKQVVAECKFDGDRIQIHKNGEEIHFFSRSFLDHSEYAPGMSKVIIENIL 308
Query: 294 VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLC---------------- 337
VDRCILDGEMLVWDT LNRFAEFGSNQEIAKAA++GL +DRQLC
Sbjct: 309 VDRCILDGEMLVWDTVLNRFAEFGSNQEIAKAAKEGLETDRQLCCILEWIASYVLALCVN 368
Query: 338 ---------------YFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHG 382
Y AFD+LY GDTSVIHQSL ERHE+LQKVV+P KG LE LVP G
Sbjct: 369 ILSCQDFFFSNKRESYVAFDILYAGDTSVIHQSLTERHEILQKVVRPLKGHLEILVPTGG 428
Query: 383 LNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN--------------------------- 415
LN H RP EPCWS++AH++D+VEKFFK+T++N
Sbjct: 429 LNIH-RPPDEPCWSILAHSLDDVEKFFKDTVDNRFFPTSPNTDELSNLSISLMIQFRFSD 487
Query: 416 -------RDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGG 468
R+EGI+LKDL SKWEPGDRSGKWLKLKP+YI AG+DLDV+IIGGYYGSGRRGG
Sbjct: 488 YSICYVLREEGIILKDLESKWEPGDRSGKWLKLKPDYIHAGADLDVIIIGGYYGSGRRGG 547
Query: 469 EVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPS 528
EVAQFLV LA ++YP+RF+SFCRVGTGLSDEELDA+VTKLKP+FRK EYPK+ PP
Sbjct: 548 EVAQFLVGLAVPSDDNSYPKRFLSFCRVGTGLSDEELDALVTKLKPHFRKNEYPKK-PPR 606
Query: 529 FYQVTNNSKERPDVWIESPEK-----------------SIILSITSDIRTIRSEVFSAPY 571
FY+VTN+SKERPDVWIESP+K S+I+SITSDIRTI+SEVF+APY
Sbjct: 607 FYEVTNHSKERPDVWIESPDKQSVRFRKHLIYCITKCRSVIISITSDIRTIKSEVFAAPY 666
Query: 572 SLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKE 612
SLRFPRI R+RYDKPWH+CLDVQ+FV++VHSSNGTT + +
Sbjct: 667 SLRFPRIQRLRYDKPWHECLDVQAFVDIVHSSNGTTHRAAD 707
>sp|Q5R6L3|DNLI4_PONAB DNA ligase 4 OS=Pongo abelii GN=DNL4 PE=2 SV=1
Length = 911
Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust.
Identities = 240/679 (35%), Positives = 384/679 (56%), Gaps = 55/679 (8%)
Query: 12 LVSLFNWIQKTKPAAKKRSKFRKFLDTY-----------CDSVD-YFSALRLILPSLDRE 59
L S IQK+K A+K FR+FLD++ D D ++ A+RLILP L+RE
Sbjct: 19 LCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDAFHKNQKDVTDSFYPAMRLILPQLERE 78
Query: 60 RGSYGLKESVLANCLIDALGMSKDSADAVRLINWRK-GGAAPNAGNFPMVAAEVLQRRQG 118
R +YG+KE++LA I+ L + +D DA++L+N+R G +AG+F M+A VL+ R
Sbjct: 79 RMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPR-C 137
Query: 119 MISGGLTIKELNDLLDRLASSENRAEKISV---LSTLIKKTNAQEMKWIIMIILKDLKLG 175
+ G LTI+++NDLLD +AS+ + K + L LI +++A E KW+I +I+KDLKLG
Sbjct: 138 LQKGSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLITQSSALEQKWLIRMIIKDLKLG 197
Query: 176 ISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDA 235
+S+++IF FH DA +L NVT DL+ VC +L D + I + A +P LA I D
Sbjct: 198 VSQQTIFSVFHSDAVELHNVTTDLEKVCRQLHDPSVGLSDISITLFSAFKPMLAA-IADI 256
Query: 236 HAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHS-EYGH-----AMSKIIE 289
+ + + IE K DG+R+Q+HK+G YFSR+ +++ ++G +++ I
Sbjct: 257 EHIEKDMKHQSFYIETKLDGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIH 316
Query: 290 QNVLVD--RCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVG 347
D CILDGEM+ ++ + F + G+ +I + D SD Q CY FDVL V
Sbjct: 317 NAFKTDIQICILDGEMMAYNPNTQTFMQKGTKFDIKRMVED---SDLQTCYCVFDVLMVN 373
Query: 348 DTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEK 407
+ + H++L++R+E+L + P GR+E + AH +EV
Sbjct: 374 NKKLGHETLRKRYEILSSIFTPIPGRIEIVQKTQ-----------------AHTKNEVID 416
Query: 408 FFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIGGYYGSGRR 466
E I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LI+GGY+G G R
Sbjct: 417 ALNEAIDKREEGIMIKQPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGSR 476
Query: 467 GGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAP 526
GG ++ FL A+AE+P P P F + RVG+G + +EL + KL Y++ + K+AP
Sbjct: 477 GGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWKPFH--KKAP 534
Query: 527 PSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKP 586
PS E+P+V+IE P S+I+ I + + S+++ +LRFPRI+++R DK
Sbjct: 535 PSSILC---GTEKPEVYIE-PCNSVIVQIKA-AEIVPSDMYKTGCTLRFPRIEKIRDDKE 589
Query: 587 WHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTD 646
WH+C+ + +L ++G Y G DD+P++ + + K V + H +
Sbjct: 590 WHECMTLDDLEQLRGKASGKLASKHFYVG-GDDEPQEKKRKAAPKMKKVIGIIEHLKAPN 648
Query: 647 VSDIKGETSIFSDMVFCIL 665
++++ ++IF D+ FC++
Sbjct: 649 LTNVNKISNIFEDVEFCVM 667
>sp|P49917|DNLI4_HUMAN DNA ligase 4 OS=Homo sapiens GN=LIG4 PE=1 SV=2
Length = 911
Score = 389 bits (1000), Expect = e-107, Method: Compositional matrix adjust.
Identities = 239/679 (35%), Positives = 384/679 (56%), Gaps = 55/679 (8%)
Query: 12 LVSLFNWIQKTKPAAKKRSKFRKFLDTY-----------CDSVD-YFSALRLILPSLDRE 59
L S IQK+K A+K FR+FLD++ D D ++ A+RLILP L+RE
Sbjct: 19 LCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERE 78
Query: 60 RGSYGLKESVLANCLIDALGMSKDSADAVRLINWRK-GGAAPNAGNFPMVAAEVLQRRQG 118
R +YG+KE++LA I+ L + +D DA++L+N+R G +AG+F M+A VL+ R
Sbjct: 79 RMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPR-C 137
Query: 119 MISGGLTIKELNDLLDRLASSENRAEKISV---LSTLIKKTNAQEMKWIIMIILKDLKLG 175
+ G LTI+++NDLLD +AS+ + K + L LI +++A E KW+I +I+KDLKLG
Sbjct: 138 LQKGSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLITQSSALEQKWLIRMIIKDLKLG 197
Query: 176 ISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDA 235
+S+++IF FH DA +L NVT DL+ VC +L D + I + A +P LA I D
Sbjct: 198 VSQQTIFSVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSDISITLFSAFKPMLAA-IADI 256
Query: 236 HAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHS-EYGH-----AMSKIIE 289
+ + + IE K DG+R+Q+HK+G YFSR+ +++ ++G +++ I
Sbjct: 257 EHIEKDMKHQSFYIETKLDGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIH 316
Query: 290 QNVLVD--RCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVG 347
D CILDGEM+ ++ + F + G+ +I + D SD Q CY FDVL V
Sbjct: 317 NAFKADIQICILDGEMMAYNPNTQTFMQKGTKFDIKRMVED---SDLQTCYCVFDVLMVN 373
Query: 348 DTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEK 407
+ + H++L++R+E+L + P GR+E + AH +EV
Sbjct: 374 NKKLGHETLRKRYEILSSIFTPIPGRIEIVQKTQ-----------------AHTKNEVID 416
Query: 408 FFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIGGYYGSGRR 466
E I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LI+GGY+G G R
Sbjct: 417 ALNEAIDKREEGIMVKQPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGSR 476
Query: 467 GGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAP 526
GG ++ FL A+AE+P P P F + RVG+G + +EL + KL Y++ + ++AP
Sbjct: 477 GGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWKPFH--RKAP 534
Query: 527 PSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKP 586
PS E+P+V+IE P S+I+ I + + S+++ +LRFPRI+++R DK
Sbjct: 535 PSSILC---GTEKPEVYIE-PCNSVIVQIKA-AEIVPSDMYKTGCTLRFPRIEKIRDDKE 589
Query: 587 WHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTD 646
WH+C+ + +L ++G Y G DD+P++ + + K V + H +
Sbjct: 590 WHECMTLDDLEQLRGKASGKLASKHLYIG-GDDEPQEKKRKAAPKMKKVIGIIEHLKAPN 648
Query: 647 VSDIKGETSIFSDMVFCIL 665
++++ ++IF D+ FC++
Sbjct: 649 LTNVNKISNIFEDVEFCVM 667
>sp|Q90YB1|DNLI4_CHICK DNA ligase 4 OS=Gallus gallus GN=LIG4 PE=2 SV=2
Length = 912
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 240/680 (35%), Positives = 379/680 (55%), Gaps = 57/680 (8%)
Query: 12 LVSLFNWIQKTKPAAKKRSKFRKFLDTY-----------CDSVD-YFSALRLILPSLDRE 59
L S IQ K +K F+ FLD++ D D ++ A+RLILP L+RE
Sbjct: 24 LCSTLERIQTCKSRPEKTKYFKDFLDSWRKFHSALHQKEKDVTDSFYPAMRLILPQLERE 83
Query: 60 RGSYGLKESVLANCLIDALGMSKDSADAVRLINWRK-GGAAPNAGNFPMVAAEVLQRRQG 118
R +YG+KE++LA I+ L + KD DAV+L+N+R G+ +AG+F M+A VL+ R
Sbjct: 84 RMAYGIKETMLAKLYIELLNLPKDGKDAVKLLNYRTPTGSRGDAGDFAMIAYFVLKPRSP 143
Query: 119 MISGGLTIKELNDLLDRLASSENRAEKISV---LSTLIKKTNAQEMKWIIMIILKDLKLG 175
G LT++++N+LLD +A++ K V L LI ++ A E KW+I +I+KDLKLG
Sbjct: 144 K-RGRLTVEQVNELLDAIANNNAAKNKGLVKKSLLQLITQSTALEQKWLIRMIIKDLKLG 202
Query: 176 ISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDA 235
+S+++IF FHPDA +L NVT DL+ VC +L D + I + A +P LA I D
Sbjct: 203 VSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSLSDVSIMLFSAFKPMLAA-IADV 261
Query: 236 HAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHS-EYGH-----AMSKIIE 289
++++ + IE K DG+R+Q+HK+G YFSR+ D++ ++G +++ I
Sbjct: 262 QQIEKQMNNQVFYIETKLDGERMQMHKDGDVYKYFSRNGFDYTQQFGASPVDGSLTPFI- 320
Query: 290 QNVL---VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYV 346
NV + CILDGEM+ ++ F + G+ +I + D SD Q C+ FDVL +
Sbjct: 321 HNVFKSDIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMVED---SDLQTCFCVFDVLMI 377
Query: 347 GDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVE 406
D + H+SL +R+++L V P GR+ + H ++ R EV
Sbjct: 378 NDQKLAHESLSKRYKILSNVFTPLTGRIHVV---HKKSARTR--------------KEVI 420
Query: 407 KFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIGGYYGSGR 465
E I+NR+EGI++KD S ++P R WLK+KPEY+ D LD+LI+GGY+G G
Sbjct: 421 DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS 480
Query: 466 RGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRA 525
RGG ++ FL A+AE PAP+ P F S CRVG+G + +EL + KL +++ Y ++
Sbjct: 481 RGGMMSHFLCAVAETPAPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYN--RKD 538
Query: 526 PPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDK 585
PP E+P+++IE P S+I+ I + + S+++ +LRFPRI+++R DK
Sbjct: 539 PPCNILC---GTEKPEMYIE-PCNSVIVQIKA-AEIVNSDMYKTDCTLRFPRIEKIREDK 593
Query: 586 PWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQT 645
W++C+ + L + G Y D+ ++ R + KK + I F
Sbjct: 594 EWYECMTLDMLEHLRSRAEGKLASKHLYIDEYDEPQEKKRRTVPKVKKVIGIA-EQFKAP 652
Query: 646 DVSDIKGETSIFSDMVFCIL 665
D+S++ +S+F D+ FC++
Sbjct: 653 DLSNVNKVSSMFEDVEFCVM 672
>sp|Q8BTF7|DNLI4_MOUSE DNA ligase 4 OS=Mus musculus GN=Lig4 PE=2 SV=2
Length = 911
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 236/679 (34%), Positives = 380/679 (55%), Gaps = 55/679 (8%)
Query: 12 LVSLFNWIQKTKPAAKKRSKFRKFLDTY-----------CDSVD-YFSALRLILPSLDRE 59
L S IQK K A+K F++FLD++ D D ++ A+RLILP L+RE
Sbjct: 19 LCSTLERIQKGKDRAEKIRHFKEFLDSWRKFHDALHKNRKDVTDSFYPAMRLILPQLERE 78
Query: 60 RGSYGLKESVLANCLIDALGMSKDSADAVRLINWRK-GGAAPNAGNFPMVAAEVLQRRQG 118
R +YG+KE++LA I+ L + ++ DA +L+N+R GA +AG+F M+A VL+ R
Sbjct: 79 RMAYGIKETMLAKLYIELLNLPREGKDAQKLLNYRTPSGARTDAGDFAMIAYFVLKPR-C 137
Query: 119 MISGGLTIKELNDLLDRLASSENRAEKISV---LSTLIKKTNAQEMKWIIMIILKDLKLG 175
+ G LTI+++N+LLD +AS+ + +K V L LI +++A E KW+I +I+KDLKLG
Sbjct: 138 LQKGSLTIQQVNELLDLVASNNSGKKKDLVKKSLLQLITQSSALEQKWLIRMIIKDLKLG 197
Query: 176 ISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDA 235
IS+++IF FH DA +L NVT DL+ VC +L D + I + A +P LA + D
Sbjct: 198 ISQQTIFSIFHNDAVELHNVTTDLEKVCRQLHDPSVGLSDISITLFSAFKPMLAA-VADV 256
Query: 236 HAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHS-EYGH-----AMSKIIE 289
+ + + IE K DG+R+Q+HK+G+ YFSR+ +++ ++G +++ I
Sbjct: 257 ERVEKDMKQQSFYIETKLDGERMQMHKDGALYRYFSRNGYNYTDQFGESPQEGSLTPFIH 316
Query: 290 QNVLVD--RCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVG 347
D CILDGEM+ ++ + F + G +I + D S Q CY FDVL V
Sbjct: 317 NAFGTDVQACILDGEMMAYNPTTQTFMQKGVKFDIKRMVED---SGLQTCYSVFDVLMVN 373
Query: 348 DTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEK 407
+ ++L++R+E+L P +GR+E + AH EV
Sbjct: 374 KKKLGRETLRKRYEILSSTFTPIQGRIEIVQKTQ-----------------AHTKKEVVD 416
Query: 408 FFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIGGYYGSGRR 466
+ I+ R+EGI++K S ++P R WLK+KPEY+ D LDVLI+GGY+G G R
Sbjct: 417 ALNDAIDKREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVSGLMDELDVLIVGGYWGKGSR 476
Query: 467 GGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAP 526
GG ++ FL A+AE P P P F + CRVG+G + +EL + KL Y++ + K++P
Sbjct: 477 GGMMSHFLCAVAETPPPGDRPSVFHTLCRVGSGYTMKELYDLGLKLAKYWKPFH--KKSP 534
Query: 527 PSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKP 586
PS E+P+V+IE P+ S+I+ I + + S+++ +LRFPRI+++R DK
Sbjct: 535 PSSILC---GTEKPEVYIE-PQNSVIVQIKA-AEIVPSDMYKTGSTLRFPRIEKIRDDKE 589
Query: 587 WHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTD 646
WH+C+ + +L ++G + G DD+P++ R + K + H +
Sbjct: 590 WHECMTLGDLEQLRGKASGKLATKHLHVG-DDDEPREKRRKPISKTKKAIRIIEHLKAPN 648
Query: 647 VSDIKGETSIFSDMVFCIL 665
+S++ +++F D+ FC++
Sbjct: 649 LSNVNKVSNVFEDVEFCVM 667
>sp|Q54CR9|DNLI4_DICDI DNA ligase 4 OS=Dictyostelium discoideum GN=lig4 PE=3 SV=1
Length = 1088
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 223/664 (33%), Positives = 367/664 (55%), Gaps = 85/664 (12%)
Query: 15 LFNWIQKTKPAAKKRSKFRKFLDTYCDSVD-YFSALRLILPSLDRERGSYGLKESVLANC 73
L N I + K++ KF++ Y D + ++ LRLILP LD++R SYGLKE LA
Sbjct: 143 LMNRIINDTKISNKKNYLEKFMNHYKDEPNNFYQLLRLILPQLDKDRNSYGLKEKTLARL 202
Query: 74 LIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGGLTIK--ELND 131
++ L +S +S DA+RL+NW+K G+F L+ R +G + + ++N+
Sbjct: 203 YVELLNISPESVDAMRLLNWKKSTNDEIGGDFGTAVYLSLKNRCNNDNGRIKVSMGDINE 262
Query: 132 LLDRLASS-ENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAE 190
LD+L+ ++ K+S+L +++ T AQE KW + IILK++K G+S+ FHPDA
Sbjct: 263 SLDQLSQPLTDKKTKVSILKKVLRSTTAQEQKWFVRIILKEMKNGLSDNITLKFFHPDAI 322
Query: 191 DLFNVTCDLKLVC-----------EKLKDRNQRHKRQD------------------IEVG 221
D FN+T +L+LVC ++LKD+ + ++++ I++
Sbjct: 323 DHFNITSNLRLVCTNLFYMTQSKQKELKDKQKLEEKENLLKQQQQQQNDLDIYKLEIKLF 382
Query: 222 KAVRPQLAMRIGDAHAAW---RKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHS 278
++P LA R + + + + V+E KFDG+RIQIHK+G ++ YFSR+ D +
Sbjct: 383 NPIKPMLANRQSIDNLSMILNSAISATQFVVEKKFDGERIQIHKDGEQVKYFSRNSNDST 442
Query: 279 E-YGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSD---- 333
YG + I+++ VL +RCILDGE++VWD+ RF +FG+ + +A +DG+S
Sbjct: 443 GIYGSMFTPIVKECVLAERCILDGELIVWDSISQRFEDFGNLKTLA-LNKDGISGSGDPL 501
Query: 334 -----RQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVR 388
+QLC+ AFD+L+V D SV++ L +R LL++ V + E +
Sbjct: 502 GINYGKQLCFIAFDILFVKDQSVMNLPLMQRLMLLKRCVTIKSKQFE-----------IS 550
Query: 389 PQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI-- 446
Q +++ ++ + I NR+EG++LK+L S + P +R KW+K+KPEYI
Sbjct: 551 EQT------TVNSISQIISLLESAIINREEGLMLKNLHSLYVPAERKDKWVKIKPEYIDG 604
Query: 447 --RAGSDLDVLIIGGYYGSG--RRGGEVAQFLVA---LAERPAPD-----TYPRR--FIS 492
DLD++IIGGYYGSG RRGG ++ F++ +A+ D T+ + F S
Sbjct: 605 MGNGADDLDLVIIGGYYGSGLNRRGGTISHFMLGVPFIADSTDTDIDDESTFDKNVIFYS 664
Query: 493 FCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSII 552
FC+VG+G +D +L ++ L P++ + K PPS Q+ KE+PDVWI+ S +
Sbjct: 665 FCKVGSGYTDIQLKSLQKDLDPHWNNFSTSK--PPSIIQLAEPFKEKPDVWIDPRVYSKV 722
Query: 553 LSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELV--HSSNGTTQKG 610
L I + + + ++ + Y+LRFPR+ ++R DK W DC + ++L +S+N ++
Sbjct: 723 LQIKAS-QIVVTDKYKCGYTLRFPRVLKIRDDKGWKDCCSHEEIIDLFTNYSTNLNFKRD 781
Query: 611 KEYG 614
EYG
Sbjct: 782 HEYG 785
>sp|Q6C8A3|DNLI4_YARLI DNA ligase 4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=LIG4 PE=3 SV=1
Length = 956
Score = 311 bits (798), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 216/668 (32%), Positives = 342/668 (51%), Gaps = 48/668 (7%)
Query: 21 KTKPAAKKRSKFRKFLDTYCDSV--DYFSALRLILPSLDRERGSYGLKESVLANCLIDAL 78
+ KP K +F+ + + V D + A RLILP DRER YGLKE L + L
Sbjct: 71 RKKPTEAKAHIASQFIKGWVEEVGKDIYPAFRLILPDKDRERAVYGLKEKALGRLWVKVL 130
Query: 79 GMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMIS-GGLTIKELNDLLDRLA 137
++KDS DA L W++GG +AGNF EVL +R + G +T+ E+N+ LD LA
Sbjct: 131 NLAKDSPDAKALSEWKQGGNE-SAGNFSKRCYEVLSKRTSLTDYGHMTVDEVNERLDLLA 189
Query: 138 SSE-NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVT 196
E ++A++I +L+ K NA E+KW++ IIL+ +K+ +EK F +HPDAE LFNVT
Sbjct: 190 DGETDQAKQIEILTYFYKHMNATELKWLVNIILRQMKMNATEKVFFEPWHPDAESLFNVT 249
Query: 197 CDLKLVCEKLKDRNQRHKRQDIEVG--KAVRPQLAM--RIGDAHAAWRKLHGKEVVIECK 252
LK VC +L D +R + +V PQ+A + A + G+ IE K
Sbjct: 250 ASLKRVCWELTDPTKRLTSAEAQVSLFACFMPQIAAFPKYSGQDIAGKHFKGRPFYIEEK 309
Query: 253 FDGDRIQIHKN--GSEIHYFSRSFLDHSE-YGHAMSK-----------IIEQNVLVDRCI 298
DG+R+Q+H + G++ H++SR D +E YG+++ II N V C+
Sbjct: 310 IDGERMQMHMSEYGNKFHWWSRRSKDFTETYGNSLDDASGSLTKRLRGII--NPKVRNCV 367
Query: 299 LDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKE 358
LDGEM+ +D + + FG+ + + ++ L+ + + + FD+L + D ++ +L E
Sbjct: 368 LDGEMVAYDPATKKIIPFGTLRTANRNEQNDLNLTKPM-FMVFDILLLNDKPLVDYTLAE 426
Query: 359 RHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDE 418
R L+ + + ET+ + L V P E A E+E ++ I E
Sbjct: 427 RKRTLRTIFARTDN--ETVGQEGVL--EVLPYTE------ATTAAEIETCMRKIIAESSE 476
Query: 419 GIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIGGYYGSGRRGGEVAQFLVAL 477
G+V+KD S + R WLK+KPEY+ G LDV+IIGGYYGSG+RG ++ +L L
Sbjct: 477 GLVIKDPTSVYRVNTRDDSWLKMKPEYMSEFGEKLDVVIIGGYYGSGKRGSILSSYLCGL 536
Query: 478 AERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSK 537
+ +F SF +VG GL+ + A+ TK + +++++ + N
Sbjct: 537 RADGSD-----QFWSFFKVGGGLTAGDYQAIRTKTEGKWKRWDKNDKPKNVLLAGPNGDL 591
Query: 538 ERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFV 597
ERPDVWIE P S+++ + + + S+ + LRFPR +R DK W D L + F
Sbjct: 592 ERPDVWIE-PSDSVVVEVKA-ASVVASDQYKVGLCLRFPRFRALRLDKTWEDGLTISQFA 649
Query: 598 ELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIF 657
EL + + KE L+D K + R ++ ++ V S + ++ + TS+F
Sbjct: 650 ELRQTVEMEAE-NKEL-ELEDRKRRNAGPGRGAKRLKLANVSSD--EDELGTDERPTSVF 705
Query: 658 SDMVFCIL 665
F +L
Sbjct: 706 KATSFAVL 713
>sp|A8N936|DNLI4_COPC7 DNA ligase 4 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC
MYA-4618 / FGSC 9003) GN=LIG4 PE=3 SV=2
Length = 1025
Score = 311 bits (797), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 213/615 (34%), Positives = 332/615 (53%), Gaps = 53/615 (8%)
Query: 11 VLVSLFNWIQKTKPAAKKRSKFRKFLDTYC------DSVDYFSALRLILPSLDRERGSYG 64
VLV LF + +K+ + RK LD + D + LRL+LP DR+R YG
Sbjct: 43 VLVKLFEKLA----TERKQERRRKLLDAWFRHWRREKGFDLYPVLRLLLPQKDRDRAVYG 98
Query: 65 LKESVLANCLIDALGMSKDSADAVRLINWRKGGAA-PNAGNFPMVAAEVLQRRQGMISGG 123
LKE LA I + + DA+RL+NW+K ++G+FP V EV+ +R +I G
Sbjct: 99 LKEKNLAKTYIKLIPLGMRDPDAIRLLNWKKPTERDKSSGDFPQVLCEVVSKRSSVIEGT 158
Query: 124 LTIKELNDLLDRLASSENRAEKIS-VLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIF 182
LTI ELN++LD +A + +++ S +L + + A E +WII IILKD+ + + E ++F
Sbjct: 159 LTIDELNEILDDIAKNMGKSDVQSKILRRIYNNSTADEQRWIIRIILKDMNISVKETTVF 218
Query: 183 HEFHPDAEDLFNVTCDLKLVCEKLKDRNQR--HKRQDIEVGKAVRPQLAMR-IGDAHAAW 239
FHPDA+DL+N DLK V +L D ++R K ++I++ A P L R
Sbjct: 219 AVFHPDAQDLYNTCSDLKKVAWELWDPSRRLNAKDKEIQIFHAFAPMLCKRPTRKIEETV 278
Query: 240 RKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGH-----AMSKIIEQ--N 291
+ + G + +IE K DG+R+Q+HK G+E Y SR D++ YG +++ I+ +
Sbjct: 279 KAMGGSKFIIEEKLDGERMQLHKRGNEYFYCSRKGKDYTYLYGKHIGAGSLTPFIDSAFD 338
Query: 292 VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSV 351
+D ILDGEMLVWD R FG+ + A R ++ + C+ FD+LY+ S+
Sbjct: 339 SRIDDIILDGEMLVWDPVSERNLPFGT-LKTAALDRSKKENNPRPCFKVFDLLYLNGMSL 397
Query: 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKE 411
+ +++K R L+ +KP GR+E V ++ QGE +++ K ++
Sbjct: 398 LDKTVKFRKNNLRHCIKPIPGRIE-FVEEY--------QGE--------TANDIRKRMEQ 440
Query: 412 TIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI-RAGSDLDVLIIGGYYGSGRRGGEV 470
+ENR EG+V+K +K+ R+ W+K+KPEY+ G +DVL++ G YGSG+RGG V
Sbjct: 441 VMENRGEGLVIKHPKAKYILNGRNTDWIKVKPEYMDNMGETVDVLVVAGNYGSGKRGGGV 500
Query: 471 AQFLVALAE--RPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPS 528
+ + A+ + RP D P ++ SF R+GTGLS D V + KP+ K PK PP
Sbjct: 501 STLICAVMDDRRPDSDDEP-KYSSFVRIGTGLS--FADYVWVRSKPW--KVWDPKN-PPE 554
Query: 529 FYQVTNNSKE-RPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPW 587
F Q +E + DV++E PE S IL + + S+ + +++RFPR +R D
Sbjct: 555 FLQTAKKGQEDKGDVYLE-PEDSFILKVKA-AEITPSDQYHMGFTMRFPRALAIRDDLSI 612
Query: 588 HDCLDVQSFVELVHS 602
DC+ E + S
Sbjct: 613 ADCMTATEVFESLKS 627
>sp|Q7Z7W5|DNLI4_COPCI DNA ligase 4 OS=Coprinopsis cinerea GN=LIG4 PE=2 SV=1
Length = 1025
Score = 311 bits (797), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 213/615 (34%), Positives = 332/615 (53%), Gaps = 53/615 (8%)
Query: 11 VLVSLFNWIQKTKPAAKKRSKFRKFLDTYC------DSVDYFSALRLILPSLDRERGSYG 64
VLV LF + +K+ + RK LD + D + LRL+LP DR+R YG
Sbjct: 43 VLVKLFEKLA----TERKQERRRKLLDAWFRHWRREKGFDLYPVLRLLLPQKDRDRAVYG 98
Query: 65 LKESVLANCLIDALGMSKDSADAVRLINWRKGGAA-PNAGNFPMVAAEVLQRRQGMISGG 123
LKE LA I + + DA+RL+NW+K ++G+FP V EV+ +R +I G
Sbjct: 99 LKEKNLAKTYIKLIPLGMRDPDAIRLLNWKKPTERDKSSGDFPQVLCEVVSKRSSVIEGT 158
Query: 124 LTIKELNDLLDRLASSENRAEKIS-VLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIF 182
LTI ELN++LD +A + +++ S +L + + A E +WII IILKD+ + + E ++F
Sbjct: 159 LTIDELNEILDDIAKNMGKSDVQSKILRRIYNNSTADEQRWIIRIILKDMNISVKETTVF 218
Query: 183 HEFHPDAEDLFNVTCDLKLVCEKLKDRNQR--HKRQDIEVGKAVRPQLAMR-IGDAHAAW 239
FHPDA+DL+N DLK V +L D ++R K ++I++ A P L R
Sbjct: 219 AVFHPDAQDLYNTCSDLKKVAWELWDPSRRLNAKDKEIQIFHAFAPMLCKRPTRKIEETV 278
Query: 240 RKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGH-----AMSKIIEQ--N 291
+ + G + +IE K DG+R+Q+HK G+E Y SR D++ YG +++ I+ +
Sbjct: 279 KAMGGSKFIIEEKLDGERMQLHKRGNEYFYCSRKGKDYTYLYGKHIGAGSLTPFIDSAFD 338
Query: 292 VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSV 351
+D ILDGEMLVWD R FG+ + A R ++ + C+ FD+LY+ S+
Sbjct: 339 SRIDDIILDGEMLVWDPVSERNLPFGT-LKTAALDRSKKENNPRPCFKVFDLLYLNGMSL 397
Query: 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKE 411
+ +++K R L+ +KP GR+E V ++ QGE +++ K ++
Sbjct: 398 LDKTVKFRKNNLRHCIKPIPGRIE-FVEEY--------QGE--------TANDIRKRMEQ 440
Query: 412 TIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI-RAGSDLDVLIIGGYYGSGRRGGEV 470
+ENR EG+V+K +K+ R+ W+K+KPEY+ G +DVL++ G YGSG+RGG V
Sbjct: 441 VMENRGEGLVIKHPKAKYILNGRNTDWIKVKPEYMDNMGETVDVLVVAGNYGSGKRGGGV 500
Query: 471 AQFLVALAE--RPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPS 528
+ + A+ + RP D P ++ SF R+GTGLS D V + KP+ K PK PP
Sbjct: 501 STLICAVMDDRRPDSDDEP-KYSSFVRIGTGLS--FADYVWVRSKPW--KVWDPKN-PPE 554
Query: 529 FYQVTNNSKE-RPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPW 587
F Q +E + DV++E PE S IL + + S+ + +++RFPR +R D
Sbjct: 555 FLQTAKKGQEDKGDVYLE-PEDSFILKVKA-AEITPSDQYHMGFTMRFPRALAIRDDLSI 612
Query: 588 HDCLDVQSFVELVHS 602
DC+ E + S
Sbjct: 613 ADCMTATEVFESLKS 627
>sp|Q2U6A1|DNLI4_ASPOR DNA ligase 4 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=lig4 PE=3 SV=1
Length = 1006
Score = 299 bits (765), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 210/679 (30%), Positives = 350/679 (51%), Gaps = 65/679 (9%)
Query: 24 PAAKKRSKFRKFLDTYCDSV--DYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMS 81
P K+R +F+ + V D + A RLILP DR+R YG+KE + LI + +
Sbjct: 79 PLEKRRDIIDRFISRWRKEVGDDIYPAFRLILPDKDRDRAMYGMKEKAIGKLLIRIMKID 138
Query: 82 KDSADAVRLINWRKGGAAPN---AGNFPMVAAEVLQRRQGMIS-GGLTIKELNDLLDRLA 137
K+S DA+ L+NW+ G AG+F VL +R G +TI+E+N+ LD L+
Sbjct: 139 KNSEDALNLLNWKLPGQTTTSSMAGDFAGRCFGVLSKRPMRTEVGDMTIEEVNEKLDHLS 198
Query: 138 SSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTC 197
++ +++ +L+ ++ N +E+ W+I IIL+ +K+G +E++ F FHPDAE+L++++
Sbjct: 199 AASKENQQLPILTEFYRRMNPEELMWLIRIILRQMKVGATERTFFDVFHPDAENLYSISS 258
Query: 198 DLKLVCEKLKDRNQRHKRQD--IEVGKAVRPQLA---MRIGDAHAAWRKLHGKEVV--IE 250
L+ VC +L D N R + +D I + + +PQLA M D + +L + V IE
Sbjct: 259 SLRRVCWELHDPNIRLEAEDRGITLMQCFQPQLAQFQMHSLDRMISRMRLTEDDPVFWIE 318
Query: 251 CKFDGDRIQIHKN-------GSEIHYFSRSFLDHSE-YGH-------AMSKIIEQNVL-- 293
K DG+R+Q+H + G ++SR D++ YG+ A+++ +
Sbjct: 319 EKLDGERMQLHMDSNDSVPGGRTFRFWSRKAKDYTYLYGNGIQDENGALTRYLSDAFADG 378
Query: 294 VDRCILDGEMLVWDTSLNRFAEFGSNQEIA-KAARDGLSSDRQLCYFAFDVLYVGDTSVI 352
V+ ILDGEM+ WDT + A FG+ + A R+ SS + + FD+LY+ +
Sbjct: 379 VESLILDGEMITWDTEQDAIAPFGTLKTAALSEQRNPYSSTTRPLFRIFDILYLNGRDLT 438
Query: 353 HQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKET 412
+L++R LQK +KP R E + P E A E+E+ +
Sbjct: 439 RYTLRDRRNALQKSIKPVYRRFE-----------IHPYEE------ATGKTEIEEALRRV 481
Query: 413 IENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIGGYYGSGRRGGEVA 471
+E EG+VLK+ S + +R W+K+KPEY+ G LDV++IGGYYGSG RGG ++
Sbjct: 482 VEEASEGLVLKNPRSPYRLNERHDDWMKVKPEYMTEFGESLDVVVIGGYYGSGHRGGGLS 541
Query: 472 QFLVALAERPAPDT---YPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPS 528
FL L A + + SFC+VG G + D + + +E+ R PP+
Sbjct: 542 SFLCGLRVDDAHSSQGMVASKCYSFCKVGGGFT--AADYANIRHHTDGKWHEWKSRKPPT 599
Query: 529 FY---QVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDK 585
Y + ERPD+WI+ PE S++L + + + S+ F +LRFPR ++R DK
Sbjct: 600 TYIELAGGDAQYERPDMWIK-PEDSVVLCVKAASVAV-SDQFRIGLTLRFPRFKKLRMDK 657
Query: 586 PWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQT 645
W L VQ F++L +N ++ ++ + + + K+ +++ KK ++IV + +
Sbjct: 658 DWKSALSVQEFLDL--KANAERERKEKEFNVDNSRKKR---AKRDNKKPLAIV-GYSAEA 711
Query: 646 DVSDIKGETSIFSDMVFCI 664
+ +IF + F I
Sbjct: 712 EAQYTGPSGNIFEGLNFYI 730
>sp|O74833|DNLI4_SCHPO DNA ligase 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lig4 PE=3 SV=3
Length = 913
Score = 295 bits (754), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 187/577 (32%), Positives = 295/577 (51%), Gaps = 50/577 (8%)
Query: 44 DYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAG 103
D + LRL+LP LDRERGSYG KE L I A+ +S S DA L NWR G + + G
Sbjct: 70 DLYPLLRLMLPDLDRERGSYGFKEFGLGKLFIRAMHLSPTSEDAKSLKNWR-GSESKHTG 128
Query: 104 NFPMVAAEVLQRRQ-GMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMK 162
+F + ++LQRR G T+ ++N LLD+LA + + ++++L + + E++
Sbjct: 129 DFSTMLQDILQRRAYRTFPGAFTVGDVNALLDQLADASSEDTRVNILEQFYRSLSPLELR 188
Query: 163 WIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKD--RNQRHKRQDIEV 220
W+I I+LK K G SEK I FHPDA L+ + LK +C +L D R+ D+EV
Sbjct: 189 WLIPILLKVRKYGTSEKFILSVFHPDAARLYRLCSSLKRICWELYDPSRSLDETETDVEV 248
Query: 221 GKAVRPQLA-MRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE 279
+PQLA + D H + K IE K DG+RIQ+H + + ++SR+ ++
Sbjct: 249 FSCFQPQLANFKKKDLHQTLEAMGNKPFWIEEKLDGERIQLHMSSGKFQFYSRNARSYT- 307
Query: 280 YGHAMSKIIEQNVL-----------VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARD 328
Y + S EQ+ L + + ILDGEM+ WD L +GS + I + +
Sbjct: 308 YAYGSSYFDEQSRLTQYIIGAFDKRISQIILDGEMVTWDPVLETVIPYGSLRSIFEDSSS 367
Query: 329 GLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVR 388
S FD+LY+ S++ SL+ R +L+KV+ R+ +++P
Sbjct: 368 HSSYSPYYV--VFDILYLNGKSLVKYSLESRRRILEKVIVRESHRM-SILPYK------- 417
Query: 389 PQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA 448
V ++++E + I+ EG+V+K + G+R W+K+KP Y++
Sbjct: 418 ---------VGSTIEDIEAELRNVIQEGSEGLVIKKPSGSYHLGERMDDWIKVKPYYLQG 468
Query: 449 -GSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDA 507
G DLD LI+GGY+G G++ G++ FL L P + +F SF RVG G + + D
Sbjct: 469 FGEDLDCLILGGYFGRGKQSGKINSFLCGLRMDYTPKDHSEKFQSFVRVGGGFTYFDRDI 528
Query: 508 VVTKLKPYFRKY-----EYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTI 562
+ + + + + EY + A T E+PD+WI P+ S++L I + +
Sbjct: 529 IRKETEGKWLPWSSDALEYMELAG------TKQDFEKPDMWIH-PKDSLVLQIKA-AEVV 580
Query: 563 RSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVEL 599
S F Y+LRFPR+++VR D+ W D L + F L
Sbjct: 581 VSNRFKTNYTLRFPRLEKVRLDRSWKDALTINEFFTL 617
>sp|Q5BH83|DNLI4_EMENI DNA ligase 4 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=lig4 PE=3 SV=1
Length = 1009
Score = 291 bits (745), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 188/613 (30%), Positives = 323/613 (52%), Gaps = 57/613 (9%)
Query: 24 PAAKKRSKFRKFLDTYCDSV--DYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMS 81
P ++R +F+ + V D + A RLILP DR+R YG+KE ++ L++ + +
Sbjct: 76 PIERRRDIIERFISRWRKEVGDDIYPAFRLILPDKDRDRAMYGMKEKIIGKMLVNIMKID 135
Query: 82 KDSADAVRLINWRKGGAAPN---AGNFPMVAAEVLQRRQGMIS-GGLTIKELNDLLDRLA 137
K+S D L+NW+ G + AG+F +V+ +R G + I+E+N+ LD+L+
Sbjct: 136 KNSEDGFNLLNWKLPGQSATSSMAGDFAGRCYDVVSKRPMRTEFGNMLIEEVNEKLDQLS 195
Query: 138 SSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTC 197
S+ E++ +L+ ++ N +E+ W+I IIL+ +KLG +E++ F +HPDAE+L++++
Sbjct: 196 SASKEEEQLPILAEFYRRMNPEELAWLIRIILRQMKLGATERTFFDVWHPDAENLYSISS 255
Query: 198 DLKLVCEKLKDRNQRHKRQD--IEVGKAVRPQLA---MRIGDAHAAWRKLHGKEVV--IE 250
L+ VC +L D N R +D + + + +PQLA M+ D A + + V IE
Sbjct: 256 SLRRVCWELHDPNIRLDAEDRGVSLMQCFQPQLAQFQMQSLDRMIARMRPTEDDPVFWIE 315
Query: 251 CKFDGDRIQIH-------KNGSEIHYFSRSFLDHSE-YGH-------AMSKIIEQNVL-- 293
K DG+R+Q+H G ++SR D++ YG+ ++++ ++
Sbjct: 316 EKLDGERMQLHMVSDASAPGGRRFRFWSRKAKDYTYLYGNGIYDEAGSLTRHLKDAFADG 375
Query: 294 VDRCILDGEMLVWDTSLNRFAEFGSNQEIA-KAARDGLSSDRQLCYFAFDVLYVGDTSVI 352
VD ILDGEM+ W+T + FG+ + A R+ + FD+LY+ +
Sbjct: 376 VDNLILDGEMITWNTEQDAPEPFGTLKTAALSEQRNPFRQGIHPLFRVFDILYLNGRDLT 435
Query: 353 HQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKET 412
+L++R LQKV+KP R E H A EVE ++
Sbjct: 436 RYTLRDRRNALQKVIKPVHRRFEV----HSYEE-------------ATTKAEVEASLRKA 478
Query: 413 IENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIGGYYGSGRRGGEVA 471
+ EG+VLK+ S + +R W+K+KPEY+ G LD+++IGGYYGSG RGG+++
Sbjct: 479 VAEASEGLVLKNPRSPYRLNERHDDWMKVKPEYMTEFGESLDLVVIGGYYGSGHRGGKLS 538
Query: 472 QFLVAL---AERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPS 528
FL L + + + P + SFC+VG G + + + + ++ PK+ P +
Sbjct: 539 SFLCGLRVDEGQSSQGSNPTKCYSFCKVGGGFTAADYANIRHHTDGKWVEWN-PKKPPTT 597
Query: 529 FYQVT--NNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKP 586
+ ++ ++ ERPD+WI+ PE S+++ + + ++ S+ F +LRFPR R+R DK
Sbjct: 598 YIELAGGDSQYERPDMWIK-PEDSVVICVKAASVSV-SDQFRIGLTLRFPRFKRLRMDKD 655
Query: 587 WHDCLDVQSFVEL 599
W L VQ F++L
Sbjct: 656 WKSALSVQEFLDL 668
>sp|Q1DKE7|DNLI4_COCIM DNA ligase 4 OS=Coccidioides immitis (strain RS) GN=LIG4 PE=3 SV=1
Length = 985
Score = 289 bits (739), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 202/641 (31%), Positives = 321/641 (50%), Gaps = 77/641 (12%)
Query: 20 QKTKPAAKKRSKFRKFLDTYCDSV--DYFSALRLILPSLDRERGSYGLKESVLANCLIDA 77
Q P +R ++F+ + V D + A RLI+P DR+R YGLKE + L+
Sbjct: 67 QTLSPQELRRDIIQRFISRWRKEVGNDIYPAFRLIIPEKDRDRAMYGLKEKTIGKLLVKI 126
Query: 78 LGMSKDSADAVRLINWRKGG---AAPNAGNFPMVAAEVLQRRQGMIS-GGLTIKELNDLL 133
+ + K+S D L+NW+ G A+ AG+F EV+ +R G +TI+E+ND L
Sbjct: 127 MKIDKNSEDGFNLLNWKLPGQSMASRMAGDFAGRCYEVISKRPIRTDVGNMTIQEVNDKL 186
Query: 134 DRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLF 193
D LA++ E+I VL + N +E+ W+I IIL+ +K+G +E++ F +HPDAE LF
Sbjct: 187 DVLAATSKEDEQIPVLEEFYRNMNPEELMWLIRIILRQMKVGATERTFFEIWHPDAESLF 246
Query: 194 NVTCDLKLVCEKLKDRNQRHKRQDIEVG--KAVRPQLA-------------MRIG-DAHA 237
+++ L+ VC +L D N R + + V + +PQLA MR+ D
Sbjct: 247 SISSSLRRVCWELYDPNVRLEADEARVTLMQCFQPQLAQFQMHSFPKMIERMRLSPDDPT 306
Query: 238 AWRKLHGKEVVIECKFDGDRIQIH-------KNGSEIHYFSRSFLDHSE-YGH------- 282
W IE K DG+RIQ+H G ++SR D++ YG+
Sbjct: 307 FW---------IEEKLDGERIQLHMMSDDSIPGGKRFGFWSRKAKDYTYLYGNGFYDENG 357
Query: 283 AMSKIIEQNVL--VDRCILDGEMLVWDTSLNRFAEFGSNQEIA-KAARDGLSSDRQLCYF 339
A+++ ++ VD ILDGEM+ WD + FG+ + A R+ S+ Q F
Sbjct: 358 ALTRHLKDAFADGVDNIILDGEMITWDPEQDAPLPFGTLKTAALSEQRNPFSATGQRPLF 417
Query: 340 -AFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLV 398
FD+LY+ D ++ +L++R L+ +KP RLE + +
Sbjct: 418 RIFDILYLNDKALTRYTLRDRRRALEASIKPVHRRLEVHTYE-----------------I 460
Query: 399 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLII 457
++ ++E ++ + EG+VLK+ S + DR W+K+KPEY+ G LD ++I
Sbjct: 461 GNSAADIEPQLRKVVAEASEGLVLKNPNSPYRLNDRHDDWMKVKPEYMTEFGESLDCVVI 520
Query: 458 GGYYGSGRRGGEVAQFLVALAERPA---PDTYPRRFISFCRVGTGLSDEELDAVVTKLKP 514
GGYYGSG+RGG +A FL L A P + SF +VG G + + +
Sbjct: 521 GGYYGSGKRGGGLASFLCGLRVDEAQVRQGASPMKCYSFLKVGGGFTAPDYANIRHHTDG 580
Query: 515 YFRKYEYPKRAPPSFYQVTNNSK--ERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYS 572
++ + PK+ P F ++ ERPDVWI P++S++L + + T S+ F +
Sbjct: 581 KWKDWN-PKKPPTEFIELAGGDAQYERPDVWIR-PDESVVLCVKAASVTP-SDQFRLGLT 637
Query: 573 LRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEY 613
+RFPR R+R DK W L +Q F++L ++ QK KE+
Sbjct: 638 VRFPRFKRLRMDKDWKSALSIQEFMDLKANAE-REQKEKEF 677
>sp|Q0UCI9|DNLI4_PHANO DNA ligase 4 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574
/ FGSC 10173) GN=LIG4 PE=3 SV=1
Length = 990
Score = 285 bits (729), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 198/623 (31%), Positives = 319/623 (51%), Gaps = 69/623 (11%)
Query: 24 PAAKKRSKFRKFLDTYCDSV--DYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMS 81
P KR+ +F+ ++ +V D++ A+RLI+P DR+R YGLKE +A LI +S
Sbjct: 81 PHEAKRNIIERFIASWRKTVGNDFYPAMRLIIPDKDRDRAMYGLKEKAIAKVLIKLTKIS 140
Query: 82 KDSADAVRLINWRKGG-----AAPNAGNFPMVAAEVLQRRQ-GMISGGLTIKELNDLLDR 135
KDS DA +++NW+ G +A AG+F +VL RQ G ++I E+N+ LD+
Sbjct: 141 KDSDDAKQMLNWKLPGQLHKASASTAGDFAGRCYQVLSSRQLNTKLGDMSIAEVNNALDK 200
Query: 136 LASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNV 195
L+ + E++ + ++ NA+EM W+I IIL+ +K+G +EK+ +HPDAE LFN+
Sbjct: 201 LSQLGSEDEQVKIFQRFNRRMNAEEMTWLIRIILRQMKIGATEKTFLDIWHPDAETLFNI 260
Query: 196 TCDLKLVCEKLKDRNQRHKRQD--IEVGKAVRPQLAMRIGDAHAAWRKLHGK-------- 245
+ +L+ VC +L D R + +D + + + +PQLA D ++ K+ +
Sbjct: 261 SSNLRRVCWELYDPKVRLEGEDTGLSLMQCFQPQLAA-FQDKGGSFEKIVARLQANSDDD 319
Query: 246 EVVIECKFDGDRIQIH-------KNGSEIHYFSRSFLDHSE-YGH--------AMSKIIE 289
IE K DG+R+Q+H G ++SR D++ YG A+++ I
Sbjct: 320 SFWIEEKLDGERMQLHMIEDPEAPGGKLFGFWSRKAKDYAYLYGKHLQGDEAGALTRFIT 379
Query: 290 QNV--LVDRCILDGEMLVWDTSLNRFAEFGSNQEIA---KAARDGLSSDRQLCYFAFDVL 344
V ILDGEM+ WD ++ FG+ + A K + S+ ++ + FD +
Sbjct: 380 DAFGKNVRNIILDGEMITWDMDVDHIVGFGTLKTAAISEKENKTDKSTGQRPLFRVFDCV 439
Query: 345 YVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDE 404
Y+ D + +L++R L+ VK K RLE + P E AH+ E
Sbjct: 440 YLNDKLLTPYTLRDRRRALESAVKDVKRRLE-----------IHPYIE------AHSHTE 482
Query: 405 VEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIGGYYGS 463
+E ++ + EG+VLK+ S + DR+ W+K+KPEY+ G LD +++GGY+GS
Sbjct: 483 IEPALRKVVAESSEGLVLKNPRSMYRLNDRNADWMKVKPEYMSEFGESLDCIVVGGYFGS 542
Query: 464 GRRGGEVAQFLVALA----ERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKY 519
G RGG + FL AL +P Y + + SF +VG G S E+ A+ + + ++ +
Sbjct: 543 GHRGGAHSSFLCALLLNKDAKPGDADYEKCW-SFFKVGGGFSREDYAAIRGRTEGKWKDW 601
Query: 520 EYPKRAPPSFY---QVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFP 576
+ P+R PP N ERPD WI P S++L + S+ F +LRFP
Sbjct: 602 D-PRRPPPIIELGGHEQNRQHERPDQWIH-PSDSVVLECKA-ASVEGSDKFRFNLTLRFP 658
Query: 577 RIDRVRYDKPWHDCLDVQSFVEL 599
R +R DK W L + F E+
Sbjct: 659 RFRMLRTDKRWDQALSREEFYEI 681
>sp|Q7SB49|DNLI4_NEUCR DNA ligase 4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=lig-4 PE=3 SV=1
Length = 1046
Score = 284 bits (726), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 184/615 (29%), Positives = 318/615 (51%), Gaps = 69/615 (11%)
Query: 27 KKRSKFRKFLDTYCDSV--DYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDS 84
++R +F+ + V D++ A+RLILP DR+RG YGLKE+ + L+ + + ++S
Sbjct: 87 QRRHIIERFMSRWRSEVGNDFYPAMRLILPDKDRDRGVYGLKENTIGKLLVKVMKIDRNS 146
Query: 85 ADAVRLINWR----KGGAAPNAGNFPMVAAEVLQRRQGMIS-GGLTIKELNDLLDRLASS 139
D L++W+ + G + + G+F EV+ +R G LTI ++N LLDRLA++
Sbjct: 147 EDGYNLMHWKLPGGQSGVSRSVGDFAGRCLEVVSKRAMRAQPGDLTIADVNVLLDRLAAA 206
Query: 140 ENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDL 199
AE++ + ++ NA+EM W++ IILKD+++G +E++ + +HPDAE LF+V+ L
Sbjct: 207 SGEAEQLPIFEEFYRQMNAEEMMWLVRIILKDMRVGATERTFLNLWHPDAEALFSVSSSL 266
Query: 200 KLVCEKLKDRNQRHKRQD--IEVGKAVRPQLAMRIGDAHAAWRKL--------HGKEVVI 249
+ VC +L D R ++Q+ I++ + +PQLA W KL E I
Sbjct: 267 RRVCWELFDPEFRLEQQETGIKLMQCFQPQLAQF--QMTTTWEKLVKNLGVTEENPEFWI 324
Query: 250 ECKFDGDRIQIH-------KNGSEIHYFSRSFLDHSE-YGHAMSKIIEQNVL-------- 293
E K DG+R+Q+H G ++SR D++ YG ++ EQ+ L
Sbjct: 325 EEKLDGERMQMHMIEDDTVPGGFRFAFWSRKAKDYTYLYGESLGD--EQSALTRHLHKAF 382
Query: 294 ---VDRCILDGEMLVWDTSLNRFAEFGSNQEIA-KAARDGLSSDRQLCYFAFDVLYVGDT 349
V ILDGEM+ WD +++ FG+ + A + ++ + + Y FD+L + D
Sbjct: 383 DDGVRNLILDGEMITWDIDIDKMVPFGTLKTAALEQQKNPSKAGPRPLYRVFDILLLNDK 442
Query: 350 SVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFF 409
+ +L +R L++ V RLE L + A + D +E
Sbjct: 443 PLTEYTLNDRRRALERAVVGVHRRLEILPFER-----------------ATSPDAIEPLL 485
Query: 410 KETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIGGYYGSGRRGG 468
+ + EG+VLK+ S++ R+ W+K+KPEY+ G LD +++GGY+GSGRRGG
Sbjct: 486 RRVVAEASEGLVLKNPRSRYSLNSRNNDWIKVKPEYMSDFGESLDCVVVGGYFGSGRRGG 545
Query: 469 EVAQFLVALAER----PAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKR 524
++ FL + + + + +SF +VG G E+ + + ++ ++ P
Sbjct: 546 TLSSFLCGVRVSQNFIKSGNASAEKCLSFVKVGGGFKAEDYAEIRHHTEGKWQDWD-PSS 604
Query: 525 APPSFYQVTNNSK---ERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRV 581
P + ++ K E+PDVWI P S+++S+ + T +S+ F+ ++LRFPR ++
Sbjct: 605 PPTEYIELGGGEKLQYEKPDVWIR-PSDSVVISVKAASIT-QSDQFAMGWTLRFPRFRKL 662
Query: 582 RYDKPWHDCLDVQSF 596
R D+ W LD+ F
Sbjct: 663 RLDRAWDSALDMDEF 677
>sp|P0CN08|DNLI4_CRYNJ DNA ligase 4 OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=LIG4 PE=3 SV=1
Length = 1065
Score = 268 bits (685), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 213/673 (31%), Positives = 329/673 (48%), Gaps = 95/673 (14%)
Query: 44 DYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRK-GGAAPN- 101
D + +RL+LP DRER Y LKES+LA C ID L + K S A RLI W++ G +PN
Sbjct: 81 DLYPLIRLLLPDKDRERPVYNLKESMLARCYIDILSLEKHSEAAQRLIKWKQPAGNSPNP 140
Query: 102 AGNFPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSE-NRAEKISVLSTLIKKTNAQE 160
G+F V ++ R + G L+++ +N LLD+LA + + + + +L + + A+E
Sbjct: 141 TGDFAKVCYNEIKARSTVEEGQLSVEAVNMLLDKLAVGKMKQKDYVPILKAINMQCTAEE 200
Query: 161 MKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQD--I 218
+WII IILKDL + I E+ + FHPDA DL+NV DLK VC L D R + + +
Sbjct: 201 QEWIIRIILKDLHISIRERGVLSAFHPDAIDLYNVCSDLKRVCWTLYDPGFRLNKNETHL 260
Query: 219 EVGKAVRPQLAMRIGDA---HAAWRKLHGKEVVIECKFDGDRIQIHK--NGSEIHYFSRS 273
E+ + PQL R+ DA + A KE ++E K DG+RIQ+H NG++ Y SR
Sbjct: 261 ELFHSFLPQLCGRMNDASLENIAKAIGAPKEFIMEEKLDGERIQLHMRGNGAQWFYCSRK 320
Query: 274 FLDHSE-YGH-----AMSKIIEQNVL--VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKA 325
D++ YG ++++ I V ILDGEM+VWD + R+ FG+ + A A
Sbjct: 321 AKDYTYLYGAHPGEGSLTRYIATAFQDNVRNVILDGEMMVWDPVVERYLAFGTLKSAALA 380
Query: 326 ARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQ-----KVVKPSKGRLETLVPD 380
FD+L++ D + + L ER LL+ K ++ KGRLE +
Sbjct: 381 FS---------LVKVFDILFLNDHCLSRKRLSERKRLLRSGKIFKNIENYKGRLEFVDEK 431
Query: 381 HGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLK 440
G N ++ ++ + +E + EG+V+K ++ R W+K
Sbjct: 432 RG-----------------KNAKDIREYLERVVETKGEGLVVKKTDVIYQTNSRGYDWIK 474
Query: 441 LKPEYI-RAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTG 499
+KPEY + G +L+VL++GG++G G R G++++ L L E+ D + F+ F R
Sbjct: 475 VKPEYSDQMGENLEVLVLGGWWGKGGRSGKISRLLCGLREQAFDDGTLQDFL-FNRFWNE 533
Query: 500 L-------------------SDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTN-NSKER 539
L S L K K ++R ++ + PP F ++ ++
Sbjct: 534 LLGLRVDFVSHLMHLRSMRCSPTHLSQCRNKHKKHWRPFD--RSNPPPFMKLGPVGLDDK 591
Query: 540 PDVWIESPEKSIILSITSDIRTIRSEVFSAPY----SLRFPRIDRVRYDKPWHD-CLDVQ 594
PDV+IE PE S ++ + + SE+ A Y +LRFPR + YDK D LD +
Sbjct: 592 PDVYIE-PENSFVIEVKA------SEIVPAGYGIGFTLRFPRCKYIYYDKNSRDYALDDE 644
Query: 595 SFVELVHSSNGTTQKGKEYGGLQD--DKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKG 652
+ T+K + D +PK+ +G P +F +SD
Sbjct: 645 CLWTVGQGFFYKTRKLIKRTDFMDLFSRPKRSYDDSQG--------PGNFRGQKLSDADV 696
Query: 653 ETSIFSDMVFCIL 665
ETSIFSDM F L
Sbjct: 697 ETSIFSDMTFSDL 709
>sp|P0CN09|DNLI4_CRYNB DNA ligase 4 OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=LIG4 PE=3 SV=1
Length = 1065
Score = 268 bits (685), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 213/673 (31%), Positives = 329/673 (48%), Gaps = 95/673 (14%)
Query: 44 DYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRK-GGAAPN- 101
D + +RL+LP DRER Y LKES+LA C ID L + K S A RLI W++ G +PN
Sbjct: 81 DLYPLIRLLLPDKDRERPVYNLKESMLARCYIDILSLEKHSEAAQRLIKWKQPAGNSPNP 140
Query: 102 AGNFPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSE-NRAEKISVLSTLIKKTNAQE 160
G+F V ++ R + G L+++ +N LLD+LA + + + + +L + + A+E
Sbjct: 141 TGDFAKVCYNEIKARSTVEEGQLSVEAVNMLLDKLAVGKMKQKDYVPILKAINMQCTAEE 200
Query: 161 MKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQD--I 218
+WII IILKDL + I E+ + FHPDA DL+NV DLK VC L D R + + +
Sbjct: 201 QEWIIRIILKDLHISIRERGVLSAFHPDAIDLYNVCSDLKRVCWTLYDPGFRLNKNETHL 260
Query: 219 EVGKAVRPQLAMRIGDA---HAAWRKLHGKEVVIECKFDGDRIQIHK--NGSEIHYFSRS 273
E+ + PQL R+ DA + A KE ++E K DG+RIQ+H NG++ Y SR
Sbjct: 261 ELFHSFLPQLCGRMNDASLENIAKAIGAPKEFIMEEKLDGERIQLHMRGNGAQWFYCSRK 320
Query: 274 FLDHSE-YGH-----AMSKIIEQNVL--VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKA 325
D++ YG ++++ I V ILDGEM+VWD + R+ FG+ + A A
Sbjct: 321 AKDYTYLYGAHPGEGSLTRYIATAFQDNVRNVILDGEMMVWDPVVERYLAFGTLKSAALA 380
Query: 326 ARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQ-----KVVKPSKGRLETLVPD 380
FD+L++ D + + L ER LL+ K ++ KGRLE +
Sbjct: 381 FS---------LVKVFDILFLNDHCLSRKRLSERKRLLRSGKIFKNIENYKGRLEFVDEK 431
Query: 381 HGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLK 440
G N ++ ++ + +E + EG+V+K ++ R W+K
Sbjct: 432 RG-----------------KNAKDIREYLERVVETKGEGLVVKKTDVIYQTNSRGYDWIK 474
Query: 441 LKPEYI-RAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTG 499
+KPEY + G +L+VL++GG++G G R G++++ L L E+ D + F+ F R
Sbjct: 475 VKPEYSDQMGENLEVLVLGGWWGKGGRSGKISRLLCGLREQAFDDGTLQDFL-FNRFWNE 533
Query: 500 L-------------------SDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTN-NSKER 539
L S L K K ++R ++ + PP F ++ ++
Sbjct: 534 LLGLRVDFVSHLMHLRSMRCSPTHLSQCRNKHKKHWRPFD--RSNPPPFMKLGPVGLDDK 591
Query: 540 PDVWIESPEKSIILSITSDIRTIRSEVFSAPY----SLRFPRIDRVRYDKPWHD-CLDVQ 594
PDV+IE PE S ++ + + SE+ A Y +LRFPR + YDK D LD +
Sbjct: 592 PDVYIE-PENSFVIEVKA------SEIVPAGYGIGFTLRFPRCKYIYYDKNSRDYALDDE 644
Query: 595 SFVELVHSSNGTTQKGKEYGGLQD--DKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKG 652
+ T+K + D +PK+ +G P +F +SD
Sbjct: 645 CLWTVGQGFFYKTRKLIKRTDFMDLFSRPKRSYDDSQG--------PGNFRGQKLSDADV 696
Query: 653 ETSIFSDMVFCIL 665
ETSIFSDM F L
Sbjct: 697 ETSIFSDMTFSDL 709
>sp|Q4WVG8|DNLI4_ASPFU DNA ligase 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293
/ CBS 101355 / FGSC A1100) GN=lig4 PE=3 SV=1
Length = 979
Score = 248 bits (633), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 205/684 (29%), Positives = 342/684 (50%), Gaps = 72/684 (10%)
Query: 24 PAAKKRSKFRKFLDTYCDSV--DYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMS 81
P ++R +F+ + V D + A RLILP DR+R YG+KE + L+ + +
Sbjct: 81 PLERRRDVIERFISRWRKEVGDDIYPAFRLILPDKDRDRAMYGIKEKAIGKMLVKIMKID 140
Query: 82 KDSADAVRLINWRKGGAAPNA---GNFPMVAAEVLQRRQGMIS-GGLTIKELNDLLDRLA 137
K+S D L+NW+ G A + G+F +V+ +R G + I+E+N+ LD+L+
Sbjct: 141 KNSEDGFNLLNWKLPGQAATSRMTGDFAGRCFDVISKRPMRTDVGDMLIEEVNEKLDKLS 200
Query: 138 SSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTC 197
++ +++ +L+ ++ N +E+ W+I IIL+ +K+G +E++ F +HPDAE+L++++
Sbjct: 201 AASKEEQQLPILAEFYRRMNPEELMWLIRIILRQMKVGATERTFFDVWHPDAENLYSISS 260
Query: 198 DLKLVCEKLKDRNQRHKRQD--IEVGKAVRPQLA---MRIGDAHAAWRKLHGKEVV--IE 250
L+ VC +L D N R +D I + + +PQLA M D A + ++ V IE
Sbjct: 261 SLRRVCWELHDPNIRLDAEDRGISLMQCFQPQLAQFQMDSLDRMVARMRPTEEDPVFWIE 320
Query: 251 CKFDGDRIQIH-------KNGSEIHYFSRSFLDHSE-YGHAMSKIIEQNVLVDR------ 296
K DG+R+Q+H G ++SR +++ YG+ I ++N + R
Sbjct: 321 EKLDGERMQLHMASDDSVPGGRRFRFWSRKAKEYTYLYGNG---IYDENGSLTRYLKDAF 377
Query: 297 ------CILDGEMLVWDTSLNRFAEFGSNQEIA-KAARDGLSSD--RQLCYFAFDVLYVG 347
ILDGEM+ WD + A FG+ + A R+ S+ R L FD+LY+
Sbjct: 378 ADGVQSLILDGEMITWDPEQDAPAPFGTLKTAALSEQRNPFSTTGARPLLR-VFDILYLN 436
Query: 348 DTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEK 407
+ +L++R + LQK V+P R E + P E A D+VE
Sbjct: 437 GRDLTGYTLRDRRKALQKAVRPVHRRFE-----------IHPYEE------ATTKDQVEA 479
Query: 408 FFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIGGYYGSGRR 466
++ + EG+VLK+ S + +R W+K+KPEY+ G LD+++IGGYYGSGRR
Sbjct: 480 ALRKVVAEASEGLVLKNPRSPYRLNERHDDWMKVKPEYMTEFGESLDLIVIGGYYGSGRR 539
Query: 467 GGEVAQFLVALA---ERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPK 523
GG ++ FL L + + SFC+VG G + + + + ++ PK
Sbjct: 540 GGNLSSFLCGLRVDDGHASQGASASKCYSFCKVGGGFNAADYANIRHHTDGKWMEWN-PK 598
Query: 524 RAPPSFYQVTNNSK--ERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRV 581
+ P ++ ++ ERPD+WI+ PE S+++ + + S+ F +LRFPR R+
Sbjct: 599 KPPTAYIELAGRDAQYERPDMWIK-PEDSVVICVKA-ASVSASDQFRLGLTLRFPRFKRL 656
Query: 582 RYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSH 641
R DK W L VQ F++L + Q+ +E L D ++ R R +K V +
Sbjct: 657 RMDKDWKSALSVQEFLDL---KSNVEQEHRE-KELNVDNSRRKRVKRTAKKP--LTVAGY 710
Query: 642 FLQTDVSDIKGETSIFSDMVFCIL 665
+ DV IF + F IL
Sbjct: 711 DMDEDVKYAGPSGHIFDGLNFYIL 734
>sp|Q6CSH0|DNLI4_KLULA DNA ligase 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=LIG4 PE=3
SV=1
Length = 907
Score = 203 bits (517), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 173/593 (29%), Positives = 277/593 (46%), Gaps = 70/593 (11%)
Query: 46 FSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNF 105
+ ALRLI+P R+R Y +KE+ L L L + K S RL+ W++ A
Sbjct: 62 YPALRLIVPF--RDRRIYNVKENTLIKALCRYLRLPKSSETENRLLRWKQRAA--RGVKL 117
Query: 106 PMVAAEVLQRRQGMISGG--LTIKELNDLLDRLASSENRAEKISVLST--------LIKK 155
E +++RQ G +TI ELN LD + S E +++ ++ +
Sbjct: 118 SDFCVEEIRKRQKDYEGANRITIDELNGYLDEV-SQEGNGKRMGYMALTDSRAFNYCLNH 176
Query: 156 TNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKR 215
EMK+ IILK L E +HPDA D +V DL ++ ++L + N+R ++
Sbjct: 177 MTFMEMKFFFDIILKTRVLSGLENMFLTAWHPDATDYLSVVSDLDVLSQRLYNPNERLRQ 236
Query: 216 QD--IEVGKAVRPQLAMRIGDAHAAWRKLHGK---EVVIECKFDGDRIQIH--KNGSEIH 268
D I + A PQLA R H ++ ++ K + +IE K DG+R+QIH G +I
Sbjct: 237 TDLSITISHAFEPQLAKR---THLSYERVASKLQHDFIIEEKMDGERLQIHYINYGEQIK 293
Query: 269 YFSRSFLDHSE-YGH-----AMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFG----- 317
Y SR +D S YG +S ++ + V CILDGEM+ +DT + FG
Sbjct: 294 YLSRRGVDFSYLYGENSSSGPISPSLKLHFNVKDCILDGEMITYDTEKDIVLPFGLVKSS 353
Query: 318 -SNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLET 376
NQ ++ A + + + AFD++Y+ S+ + +L+ R + L K++ P + +E
Sbjct: 354 AMNQIQSELAGIAPTESYKPLFVAFDLVYLNGKSLTNLALERRKDYLTKILTPVERSVEI 413
Query: 377 LVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSG 436
+ + A N + ++ ++ I EGIVLK L SK+ G R+
Sbjct: 414 I-----------------QYMKAINAEAIKDSLEQAISMGSEGIVLKHLHSKYFVGSRNT 456
Query: 437 KWLKLKPEYI-RAGSDLDVLIIGGYYGSGRRGGEVAQFLVALA-ERPAPDTYPRRFISFC 494
W+K+KPEY+ + G ++D+LII GR G+ F L+ P RFISFC
Sbjct: 457 DWIKIKPEYLEQFGENMDLLII------GREQGKKDSFFCGLSISDPNEVAEKPRFISFC 510
Query: 495 RVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILS 554
+ GLS+EE + K + K+ PPS + +K P WI PE S++L
Sbjct: 511 TIANGLSNEEFKDIERKT---WGKWHIFSEDPPSPNLLGFGTK-VPYEWIH-PEDSVVLE 565
Query: 555 ITS---DIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSN 604
+ + D + + + +L F ++RYDK W F ++ + N
Sbjct: 566 VKARAIDTKESEKRKYRSGCTLHFGYCKQIRYDKDWKTVASFSEFEDMKDARN 618
>sp|Q08387|DNLI4_YEAST DNA ligase 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=DNL4 PE=1 SV=1
Length = 944
Score = 198 bits (504), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 180/629 (28%), Positives = 295/629 (46%), Gaps = 83/629 (13%)
Query: 46 FSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNF 105
+ AL L LP R+R Y +K+ VL + L + K+SA RL +W++ GN
Sbjct: 70 YPALVLALPY--RDRRIYNIKDYVLIRTICSYLKLPKNSATEQRLKDWKQ--RVGKGGNL 125
Query: 106 P-MVAAEVLQRRQGMISGGLTIKELNDLLDRLAS---SENRAEKISVLST----LIKKTN 157
++ E+ +RR S +TI +N LD L+ + R K V S ++ +
Sbjct: 126 SSLLVEEIAKRRAEPSSKAITIDNVNHYLDSLSGDRFASGRGFKSLVKSKPFLHCVENMS 185
Query: 158 AQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQD 217
E+K+ I+LK+ +G E + + +HPDA+D +V DLK+V KL D R K D
Sbjct: 186 FVELKYFFDIVLKNRVIGGQEHKLLNCWHPDAQDYLSVISDLKVVTSKLYDPKVRLKDDD 245
Query: 218 --IEVGKAVRPQLAMRIGDAH-AAWRKLHGKEVVIECKFDGDRIQIH--KNGSEIHYFSR 272
I+VG A PQLA ++ ++ R LH + ++E K DG+RIQ+H G I +FSR
Sbjct: 246 LSIKVGFAFAPQLAKKVNLSYEKICRTLHD-DFLVEEKMDGERIQVHYMNYGESIKFFSR 304
Query: 273 SFLDHSE-YGHAMSK-IIEQNVL----VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAA 326
+D++ YG ++S I Q++ V C+LDGEM+ +D FG + +A
Sbjct: 305 RGIDYTYLYGASLSSGTISQHLRFTDSVKECVLDGEMVTFDAKRRVILPFGL---VKGSA 361
Query: 327 RDGLS------SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPD 380
++ LS D Y FD+LY+ TS+ L +R + L ++ P K +E +
Sbjct: 362 KEALSFNSINNVDFHPLYMVFDLLYLNGTSLTPLPLHQRKQYLNSILSPLKNIVEIV--- 418
Query: 381 HGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLK 440
+ C+ V+ ++K + I EG+VLK S + R+ W+K
Sbjct: 419 ---------RSSRCYG-----VESIKKSLEVAISLGSEGVVLKYYNSSYNVASRNNNWIK 464
Query: 441 LKPEYIRA-GSDLDVLIIGGYYGSGRRGGEVAQFLV-------------------ALAER 480
+KPEY+ G +LD+++IG SG++ + LV + E+
Sbjct: 465 VKPEYLEEFGENLDLIVIGR--DSGKKDSFMLGLLVLDEEEYKKHQGDSSEIVDHSSQEK 522
Query: 481 PAPDTYPR--RFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKE 538
++ R + +SFC + G+S EE + K + ++++ + APP+ + +
Sbjct: 523 HIQNSRRRVKKILSFCSIANGISQEEFKEIDRKTRGHWKRTS--EVAPPA--SILEFGSK 578
Query: 539 RPDVWIESPEKSIILSITS---DIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQS 595
P WI+ P +SI+L I S D + ++ +L R+RYDK W DC +
Sbjct: 579 IPAEWID-PSESIVLEIKSRSLDNTETNMQKYATNCTLYGGYCKRIRYDKEWTDCYTLND 637
Query: 596 FVE-LVHSSNGTTQKGKEYGGLQDDKPKQ 623
E SN + Q + GL K K+
Sbjct: 638 LYESRTVKSNPSYQAERSQLGLIRKKRKR 666
>sp|Q6FVD8|DNLI4_CANGA DNA ligase 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=LIG4 PE=3 SV=1
Length = 946
Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 187/663 (28%), Positives = 323/663 (48%), Gaps = 86/663 (12%)
Query: 46 FSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRK-GGAAPNAGN 104
+ ALRLILP R+R + +K+ L + L + KDS+ +LINW++ G +
Sbjct: 82 YPALRLILPY--RDRRVFNIKDYTLIKAICAFLKLPKDSSTEKKLINWKQDAGRSVRLSK 139
Query: 105 FPMVAAEVLQRR---QGMISGGLTIKELNDLLDRLA--------SSENRAEKISVLSTLI 153
F E+ +RR Q + +TI +LN LD+LA S +N A +++ +
Sbjct: 140 F--CVEEIKKRRSEPQIDRNERITIDDLNGYLDQLAIERTEQGRSFKNLANS-DIMNKCL 196
Query: 154 KKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRH 213
EM++ I+LK+ LG E + + +HPDA+D +V DL+ V ++L D +QR
Sbjct: 197 TSMTFLEMQYFFDILLKNRPLGGHEHKLLNCWHPDAQDYLSVVSDLETVAKRLWDPSQRL 256
Query: 214 KRQD--IEVGKAVRPQLAMRIGDAHAAWRKLH---GKEVVIECKFDGDRIQIHKN--GSE 266
QD I +G A PQLA ++ H +++K+ G + IE K DG+RIQ+H GS+
Sbjct: 257 GNQDLKINIGLAFAPQLATKL---HVSYQKIGEKLGWDFFIEEKMDGERIQMHYTNFGSD 313
Query: 267 IHYFSRSFLDHSE-YGH-----AMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQ 320
I ++SR D++ YG+ ++ I N V C+LD E++ +D++ FG +
Sbjct: 314 IKFYSRRATDYTYLYGNNLKTGTLANFINLNKNVKDCVLDCEVVTFDSNNKIVLPFGMVK 373
Query: 321 EIAK--AARDGLSSDR-QLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETL 377
AK ++DG+ + FDVLY+ +++ +R E L++++ P+ R+E +
Sbjct: 374 SSAKNMLSQDGIDTQGFHPLLMVFDVLYLNGATLVDLPYYKRREYLKQILTPTAHRIEII 433
Query: 378 VPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGK 437
S+ A++ ++K ++ + EGI+LK S++ RS
Sbjct: 434 K-----------------SIRANDEQMIKKSLEKALSVGSEGIILKRYDSRYVIASRSDD 476
Query: 438 WLKLKPEYI-RAGSDLDVLIIG---GYYGSGRRG----GEVAQFLVALAERPAPDTYPRR 489
W+K+KPEY+ + G ++D++++G S G EV Q + + + +R
Sbjct: 477 WIKIKPEYLEQFGENMDLVLMGRDPSKKDSLMLGLLDYEEVIQDSPIMVNSQSSEENSQR 536
Query: 490 ---FISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIES 546
F+S C + G+S+EE + K K + E + PP Y + + P WI+
Sbjct: 537 FRGFVSLCIIANGISNEEYKEIDRKTKGLWNDSE---KIPPLEYMKFGS--KVPRQWID- 590
Query: 547 PEKSIILSITS-DIRTIRSE--VFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 603
P+KS+IL I + + RS F+A +L ++R DK W C +Q F E S
Sbjct: 591 PKKSLILEIKARSLDNTRSSERKFAAGCTLFGGYCRQIREDKNWKTCYTLQEF-ERAKSG 649
Query: 604 NGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPS-HFLQTDVSDIKGETSIFSDMVF 662
N ++G KP++ S +K+ +I+ S + D ++++ + IF M F
Sbjct: 650 NNWRKRGSS-------KPQKVIS----KKRRYNIISSVNKALEDFAELEHRSDIFDGMYF 698
Query: 663 CIL 665
+L
Sbjct: 699 YVL 701
>sp|Q75CA4|DNLI4_ASHGO DNA ligase 4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=LIG4 PE=3 SV=1
Length = 981
Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 165/604 (27%), Positives = 276/604 (45%), Gaps = 83/604 (13%)
Query: 44 DYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAG 103
D + AL L LP DR SY +K+ L L + + ++S RL++W++ AP
Sbjct: 107 DIYPALVLSLPYNDRR--SYRVKDVTLVKALCKHMKLPRNSETERRLLHWKQN--APRGV 162
Query: 104 NFPMVAAEVLQ--RRQGMISGGLTIKELNDLLDRLASSEN--RAEKISV-----LSTLIK 154
E LQ RR+ ++ ++I E+N +LD+L N + IS+ + ++
Sbjct: 163 KLSTFCVEELQKRRREPVVPKRMSIDEVNGMLDKLEHESNVGKWSYISLAESPAFNYCLE 222
Query: 155 KTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHK 214
+ E+++ I+LK + E + +HPDAE F V DL++V L D N+R +
Sbjct: 223 HMSYVELRFFFDIVLKVPIVSGLESLLLSCWHPDAESYFKVVSDLRIVAHTLYDPNERLE 282
Query: 215 RQDIEV--GKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIH--KNGSEIHYF 270
+ D+ V G A P +A R+ + G + +E K DGDRIQ+H G+ I YF
Sbjct: 283 KNDLSVRIGYAFAPHMAQRVKIPYEKVSTKLGNDFYVEEKMDGDRIQVHYMDYGNSIAYF 342
Query: 271 SRSFLDHSE-YGHAMSKIIEQNVL-----VDRCILDGEMLVWDTSLNRFAEF-----GSN 319
SR+ ++++ YG SK N L V CILDGEM+ +D + F G++
Sbjct: 343 SRNGINYTYLYGENSSKGSISNHLKFVEGVKECILDGEMVSYDKEMQCILPFGLTKSGAS 402
Query: 320 QEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVP 379
++ + Y FD+LY+ + +Q + +R E L+K++ PSK + L
Sbjct: 403 HQVNFETTGHTEPTYRPLYAVFDLLYLNGQLLTNQDVVKRKEYLEKILIPSKNVVHLL-- 460
Query: 380 DHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWL 439
G C + + + + + EGIVLK SK+ G R W+
Sbjct: 461 ----------SGPRC-----SDAEAITAALGAAVAHGSEGIVLKKARSKYSVGKRDDSWI 505
Query: 440 KLKPEYIRA-GSDLDVLIIGGYYGSGRRGGEVAQFLVALA-----ERPAPD--------- 484
K+KPEY+ G ++D+++I GR G F+ ALA E+ P
Sbjct: 506 KIKPEYLENFGENMDLVVI------GRDKGRKDSFICALAVTDDSEKNNPSSYESGSDSD 559
Query: 485 -------TYPR--RFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNN 535
P+ +FISFC + G+S+EE + + + + Y +R PP+ +
Sbjct: 560 SDSEPIIVQPKIEKFISFCSIANGISNEEFKEIDRLTRGNW--FPYDERKPPTDW--VEF 615
Query: 536 SKERPDVWIESPEKSIILSITS---DIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLD 592
+ P WI+ P+ S++L + + D +S+++ +L R+R+DK W
Sbjct: 616 GTKTPREWID-PKNSVVLEVKARSIDNEESKSDLYKTGSTLYNAYCKRIRHDKNWSTAST 674
Query: 593 VQSF 596
V +
Sbjct: 675 VAEY 678
>sp|A9A3K1|DNLI_NITMS DNA ligase OS=Nitrosopumilus maritimus (strain SCM1) GN=lig PE=3
SV=1
Length = 588
Score = 172 bits (437), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 156/543 (28%), Positives = 254/543 (46%), Gaps = 76/543 (13%)
Query: 79 GMSKDSADAVRLIN--WRKGGAAPNAGNFPMVAAEVLQRRQ--GMISGGLTIKELNDLLD 134
+SK S ++ I +RKGG +A A +L+++ + +T++ + + L
Sbjct: 68 AISKSSGIPIKKIEEEYRKGGDLGHA------ATTILEQKTQTTFLVEDITVERVYETLF 121
Query: 135 RLASSE-NRAE--KISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIF--------- 182
++A E NR++ K+ +S+L+ + E +I+ I+L L+LGI+E ++
Sbjct: 122 KIAKLEGNRSQDMKMKYISSLLNDASPLEASFILKILLGTLRLGIAENTVMDALALAFSG 181
Query: 183 -HEFHPDAEDLFNVTCDLKLVCEKLKDRNQRH-KRQDIEVGKAVRPQLAMRIGDAHAAWR 240
E E +NV+ DL V E L ++ I + +RP LA R+ A
Sbjct: 182 NKENRKILEHAYNVSSDLGKVAEVLATEGLAEVEKFKIILFNPIRPMLADRVKSEQEAIE 241
Query: 241 KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILD 300
K+ G E E K DG+R+Q+H G ++ FSRS + S Y + + I + + + +L+
Sbjct: 242 KM-GNEFAAEYKLDGERVQLHIEGDKVVLFSRSLENISSYYPDIIEKIPKTIQAENIVLE 300
Query: 301 GEMLVWDTSLNRFAEFGSNQEIAKAAR----DGLSSDRQLCYFAFDVLYVGDTSVIHQSL 356
E + + + F F QE+ R + + + FD+LY S +
Sbjct: 301 AEAVAINENTGEFLPF---QELMHRRRKYKIEKAVTQYPITVNLFDILYCNGKSCLELDY 357
Query: 357 KERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENR 416
KER E ++KVVK + H+ P + N +++E FF+ +I
Sbjct: 358 KERREKMEKVVK-----------EDDFVKHI-PMA------IVKNENDIEDFFENSINAG 399
Query: 417 DEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIGGYYGSGRRGGEVAQFLV 475
EG++LK L S ++ G R WLKLK EY G LD+++IGG++G GRR G L+
Sbjct: 400 SEGLMLKTLVSPYQAGSRGSHWLKLKREYQNELGDSLDLVVIGGFFGKGRRTGNYGTLLL 459
Query: 476 ALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNN 535
A E DT F S C+VGTG SDE+LD + L P + P+ N
Sbjct: 460 ATYEED-EDT----FTSICKVGTGFSDEDLDQLYQILNPKVTIKKNPRI----------N 504
Query: 536 SKERPDVWIESPEKSIILSITSDI------RTIRSEVF-SAPYSLRFPRID-RVRYDKPW 587
S+ DVW E PE +I + S+I + R ++ A +LRFP+ ++R +K
Sbjct: 505 SEMEADVWFE-PE-LVIEVVASEITLSPIHKAARDKIRKGAGLALRFPKFTGKMRVEKMA 562
Query: 588 HDC 590
D
Sbjct: 563 EDA 565
>sp|Q46C04|DNLI1_METBF DNA ligase 1 OS=Methanosarcina barkeri (strain Fusaro / DSM 804)
GN=lig1 PE=3 SV=1
Length = 549
Score = 172 bits (436), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 137/483 (28%), Positives = 237/483 (49%), Gaps = 74/483 (15%)
Query: 141 NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFH----------PDAE 190
++ EK +LS+++++ + +E K+I+ I+L L+LG ++ + F +
Sbjct: 93 SQEEKTGLLSSILQRASPKEGKYIVRIVLGKLRLGFGDQFLLEAFSIAFTGDKKYVVKIK 152
Query: 191 DLFNVTCDLKLVCEKLKDRNQRHKRQ-DIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVI 249
+ ++V D+ + E L ++ + I++G+ VR LA R+ ++ GK+
Sbjct: 153 ESYSVCTDIGELAESLAEQGPKALGHFSIKLGRPVRSMLAQRVKTFEELEERIPGKKAA- 211
Query: 250 ECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVW--- 306
E K+DG+R+QIHKNG EI FSR D + + + + + +L + +LDGE++ +
Sbjct: 212 EEKYDGERVQIHKNGEEIKAFSRRLEDITAQYPDVIEAVRKGILAKKIVLDGEIIAYVEG 271
Query: 307 DTSLNRFAEFGSNQEIAKAARD-GLSSDRQLC---YFAFDVLYVGDTSVIHQSLKERHEL 362
+ + EF S Q + K R + ++C F FD+LY+ S++ + ER +
Sbjct: 272 GKANDSTGEFYSFQRLMKRRRKYEVQKYTEICPVAVFFFDILYLEGNSLLKKPYPERRAI 331
Query: 363 LQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVL 422
L++ VK S E L H+ +V N++E+E FF E +E R EGI++
Sbjct: 332 LEEHVKES----EIL--------HL------ARRIVTDNLEEIEDFFNEALEKRLEGIII 373
Query: 423 KDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIGGYYGSGRRGGEVAQFLVALAE 479
K +G S +E G RS WLK K EY + D+ IIG YYG G+R G L A+
Sbjct: 374 KSMGRNSAYEAGKRSWFWLKWKEEYASGMRETFDLAIIGKYYGRGKRKGSFGALLCAIL- 432
Query: 480 RPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKER 539
+ +RF +F +VGTG ++ + + + L + E PK V S+
Sbjct: 433 ----NGEEQRFETFTKVGTGFTEADAKEIDSLLSEHIIS-EVPK-------NVLIKSRML 480
Query: 540 PDVWIESPEKSIILSITSDIRTIRSEVFSAP------------YSLRFPRIDRVRYDKPW 587
PD+++E S+++ + + SE+ +P +LRFPR R+R+DK
Sbjct: 481 PDIFVEP---SLVIEV------LGSEITESPSHTAGQGEGDTGLALRFPRFLRIRHDKGP 531
Query: 588 HDC 590
+D
Sbjct: 532 YDI 534
>sp|Q9P9K9|DNLI_SULSH DNA ligase OS=Sulfolobus shibatae GN=lig PE=3 SV=1
Length = 601
Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 139/504 (27%), Positives = 240/504 (47%), Gaps = 63/504 (12%)
Query: 124 LTIKELNDLLDRLASSE---NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
LT+ E+ L ++A + +R KI +L+ L+KK + E K+++ + L++GI + +
Sbjct: 119 LTVDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDAT 178
Query: 181 IFHEF----------HPDAEDLFNVTCDLKLVCEKLKDRN-QRHKRQDIEVGKAVRPQLA 229
+ E +N+ DL + + + ++ + K EVG +RP LA
Sbjct: 179 VLDAMAIAFGGGQSASEIVERAYNLRADLGNIAKIIVEKGIEALKTLKPEVGIPIRPMLA 238
Query: 230 MRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIE 289
R+ + +K+ G +V + K+DG+R QIHK +I FSR + + + + I
Sbjct: 239 ERLSNPEEILKKVGGSALV-DYKYDGERAQIHKKSDKIFIFSRRLENITSQYPDVVEYIS 297
Query: 290 QNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDG----LSSDRQLCYFAFDVLY 345
+ V I++GE++ D F QE+ R + + F FD++Y
Sbjct: 298 KYVEGKEFIIEGEIVAVDPESGEMRAF---QELMHRKRKSDIYEAIKEYPVNVFLFDLMY 354
Query: 346 VGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEV 405
D + L+ R +LL+ +VKP N +V+ + +NV+++
Sbjct: 355 YEDVDYTTKPLEVRRKLLESIVKP--------------NDYVKI----AHHIQVNNVEDL 396
Query: 406 EKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIGGYYG 462
+ FF I EG+++K +G + ++ G R W+KLK +Y +D +D++++GG+YG
Sbjct: 397 KSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYG 456
Query: 463 SGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYP 522
G+RGG+++ L+A A P DT F S C+V +G SDE+LD + KL R ++P
Sbjct: 457 KGKRGGKISSLLMA-AYNPKTDT----FESVCKVASGFSDEQLDELQKKLMEIKRDIKHP 511
Query: 523 KRAPPSFYQVTNNSKERPDVWIESPEKSIILS---ITSDIRTIRSEVFS--APYSLRFPR 577
+ NSK PD+WIE + I+ S + T +V A S+RFPR
Sbjct: 512 RV----------NSKMEPDIWIEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPR 561
Query: 578 IDRVRYDKPWHDCLDVQSFVELVH 601
R R DK D +E+ +
Sbjct: 562 FIRWRDDKSPEDATTTDEILEMYN 585
>sp|Q980T8|DNLI_SULSO DNA ligase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617
/ JCM 11322 / P2) GN=lig PE=1 SV=1
Length = 601
Score = 166 bits (420), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 139/507 (27%), Positives = 241/507 (47%), Gaps = 69/507 (13%)
Query: 124 LTIKELNDLLDRLASSE---NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
LT+ E+ L ++A + +R KI +L+ L+KK + E K+++ + L++GI + +
Sbjct: 119 LTVDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDAT 178
Query: 181 IFHEF----------HPDAEDLFNVTCDL----KLVCEKLKDRNQRHKRQDIEVGKAVRP 226
+ E +N+ DL K++ EK + + K Q VG +RP
Sbjct: 179 VLDAMAIAFGGGQSASEIIERAYNLRADLGNIAKIIVEKGIEALKTLKPQ---VGIPIRP 235
Query: 227 QLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSK 286
LA R+ + +K+ G +V + K+DG+R QIHK +I FSR + + +
Sbjct: 236 MLAERLSNPEEILKKMGGNAIV-DYKYDGERAQIHKKEDKIFIFSRRLENITSQYPDVVD 294
Query: 287 IIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDG----LSSDRQLCYFAFD 342
+ + + I++GE++ D F QE+ R + + F FD
Sbjct: 295 YVSKYIEGKEFIIEGEIVAIDPESGEMRPF---QELMHRKRKSDIYEAIKEYPVNVFLFD 351
Query: 343 VLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNV 402
++Y D + L+ R +LL+ +VKP N +V+ + A+NV
Sbjct: 352 LMYYEDVDYTTKPLEARRKLLESIVKP--------------NDYVKI----AHHIQANNV 393
Query: 403 DEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIGG 459
++++ FF I EG+++K +G + ++ G R W+KLK +Y +D +D++++GG
Sbjct: 394 EDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGG 453
Query: 460 YYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKY 519
+YG G+RGG+++ L+A A P D+ F S C+V +G SDE+LD + KL R
Sbjct: 454 FYGKGKRGGKISSLLMA-AYNPKTDS----FESVCKVASGFSDEQLDELQKKLMEIKRDV 508
Query: 520 EYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILS---ITSDIRTIRSEVFS--APYSLR 574
++P+ NSK PD+W+E + I+ S + T +V A S+R
Sbjct: 509 KHPRV----------NSKMEPDIWVEPVYVAEIIGSEITISPLHTCCQDVVEKDAGLSIR 558
Query: 575 FPRIDRVRYDKPWHDCLDVQSFVELVH 601
FPR R R DK D +E+ +
Sbjct: 559 FPRFIRWRDDKSPEDATTTDEILEMYN 585
>sp|Q8TSR7|DNLI1_METAC DNA ligase 1 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A) GN=lig1 PE=3 SV=1
Length = 580
Score = 166 bits (420), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 149/577 (25%), Positives = 265/577 (45%), Gaps = 91/577 (15%)
Query: 59 ERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQG 118
E + G+K+ ++ + A G+S++ AG+ VA E+ ++R+
Sbjct: 55 ENTTLGIKDRLVTRAIAGAYGVSEEEVKK----------RYARAGDLGDVAFELSKKREA 104
Query: 119 MISGGLTIKELNDLLDRLASSENRA---EKISVLSTLIKKTNAQEMKWIIMIILKDLKLG 175
LTI+E+ L ++ + + +K +LS +++K +E K+II I+L L+LG
Sbjct: 105 ----SLTIEEVFKRLRQIKEASGKGSQEKKTGLLSDILQKATPEEGKYIIRIVLGRLRLG 160
Query: 176 ISEKSIFHEFH----------PDAEDLFNVTCDLKLVCEKLKDRNQRHKRQ-DIEVGKAV 224
++ + F ++ ++V D+ + + L + I+ G+ V
Sbjct: 161 FGDQFLLEAFSIAFTGDKKHAGKIKESYSVCTDIGELAQTLAEHGAGAPGYFSIKPGRPV 220
Query: 225 RPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAM 284
+ LA R+ ++ GK+ E K+DG+R+QIHK G EI FSR D + +
Sbjct: 221 KSMLAQRVESFEELEERIKGKKAA-EEKYDGERVQIHKAGDEIKAFSRRLEDITAQYPDI 279
Query: 285 SKIIEQNVLVDRCILDGEMLVW---DTSLNRFAEFGSNQEIAKAARD-GLSSDRQLC--- 337
+ + +++ D +LDGE++ + + R EF Q + + R + R+ C
Sbjct: 280 IEAVRESISADTIVLDGEIVAYAELEKENTRIEEFYPFQNLMQRRRKYEVEKYREKCPVA 339
Query: 338 YFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSL 397
F FD+LY+ S++ ++ ER LL++ V S G+ R
Sbjct: 340 VFFFDILYLNGESLLKKTYPERRALLEEHVNGS-----------GIVHLTR-------RT 381
Query: 398 VAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKWLKLKPEYIRAGSD-LDV 454
V N++E+E FF ET+E EGIV K + S +E G RS WLK K EY + D+
Sbjct: 382 VTENIEELEDFFNETVEKGLEGIVAKSMSSNSVYEAGKRSWLWLKWKQEYSEGMRETFDL 441
Query: 455 LIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKP 514
+++G YYG G+R G L A+ + ++F +F +VGTG ++ + + + + L
Sbjct: 442 VVVGSYYGKGKRKGSFGALLCAVL-----NEEEQQFETFTKVGTGFTEADAEEINSLLSA 496
Query: 515 YFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP---- 570
+ E PK V PD++IE ++++ + + SE+ ++P
Sbjct: 497 HTVS-EAPK-------NVIIKKGMLPDIFIEP---AVVIEV------LGSEITNSPGHTA 539
Query: 571 --------YSLRFPRIDRVRYDKPWHDCLDVQSFVEL 599
+LRFPR R+RYD+ D V+ +L
Sbjct: 540 GEGEEETGLALRFPRFLRIRYDRAPFDATTVREIRDL 576
>sp|Q976G4|DNLI_SULTO DNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 /
NBRC 100140 / 7) GN=lig PE=3 SV=1
Length = 600
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 147/518 (28%), Positives = 251/518 (48%), Gaps = 65/518 (12%)
Query: 109 AAEVLQRRQGMISGGLTIKELNDLLDR--LASSE-NRAEKISVLSTLIKKTNAQEMKWII 165
+A +L + GLT++E + L + LAS E +R KI L+ L+KK + E K+I+
Sbjct: 104 SASILSFLGAQSNEGLTVEETYESLTKIALASGEGSRDIKIRSLAGLLKKASPLEAKYIV 163
Query: 166 MIILKDLKLGISEKSIFH----------EFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKR 215
+ L++GI + +I F P E +N+ DL + K+ +
Sbjct: 164 RFVDGRLRVGIGDATIMDALSTAFTGSTSFRPLIERAYNLRADLGNIA-KIIAQQGVEAL 222
Query: 216 QDI--EVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRS 273
+DI +VG +RP LA R+ D K+ G E +++ K+DG+R QIHK E++ FSR
Sbjct: 223 KDIKPQVGIPIRPMLAERMSDPAEILAKVGG-EALVDYKYDGERAQIHKKDKEVYIFSRR 281
Query: 274 FLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSD 333
+ + + + + + + + I++GE++ D N F QE+ R ++
Sbjct: 282 LENITRMYPDVVEYVREYINANEVIIEGEIVAVDPESNEIRPF---QELMHRKRKNDINE 338
Query: 334 RQLCY----FAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRP 389
Y + FD++ D + L ER + L++V+KP+ H+
Sbjct: 339 AIKEYPVNVYLFDLMLYEDADYTMKPLPERRKKLEEVIKPND------------KLHI-- 384
Query: 390 QGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIR 447
+ +NVD++ +FF + I N EG+++K + S ++ G R W+KLK +Y
Sbjct: 385 ----AHHIYTNNVDKLMEFFYDAISNGAEGVMVKSVAKDSIYQAGSRGFLWIKLKRDYQS 440
Query: 448 AGSD-LDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELD 506
+D +D++++G +YG G+RGG+++ L+A A P DT F + C+V +G SD ELD
Sbjct: 441 EMADSVDLVVVGAFYGRGKRGGKLSSLLMA-AYDPETDT----FKTVCKVASGFSDAELD 495
Query: 507 AVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILS--IT-SDIRTIR 563
+ KL + + K+ P +S+ PD+W+E + I+ IT S T
Sbjct: 496 ELQKKL----MEIKLDKKDP------RVDSQLEPDIWVEPKYVAEIIGAEITLSPEHTCC 545
Query: 564 SEVFS--APYSLRFPRIDRVRYDKPWHDCLDVQSFVEL 599
++ S A S+RFPR R R DK D + E+
Sbjct: 546 KDMVSKGAGLSVRFPRFIRWRDDKSIEDATTPKEIYEM 583
>sp|C3MYD2|DNLI_SULIM DNA ligase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1)
GN=lig PE=3 SV=1
Length = 601
Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 136/504 (26%), Positives = 238/504 (47%), Gaps = 63/504 (12%)
Query: 124 LTIKELNDLLDRLASSE---NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
L + E+ L ++A + +R KI +L+ L+KK + E K+++ + L++GI + +
Sbjct: 119 LKVDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDAT 178
Query: 181 IFHEF----------HPDAEDLFNVTCDLKLVCEKLKDRN-QRHKRQDIEVGKAVRPQLA 229
+ E +N+ DL + + + ++ + K EVG +RP LA
Sbjct: 179 VLDAMAIAFGGGQSASEIVERAYNLRADLGNIAKIIVEKGIEALKTLKPEVGIPIRPMLA 238
Query: 230 MRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIE 289
R+ + +K+ G +V + K+DG+R QIHK +I FSR + + + + I
Sbjct: 239 ERLSNPEEILKKVGGSALV-DYKYDGERAQIHKKDDKIFIFSRRLENITSQYPDVVEYIS 297
Query: 290 QNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDG----LSSDRQLCYFAFDVLY 345
+ I++GE++ D F QE+ R + + F FD++Y
Sbjct: 298 KYTEGKEFIIEGEIVAVDPESGEMRSF---QELMHRKRKSDIYEAIKEYPVNVFLFDLMY 354
Query: 346 VGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEV 405
D + L+ R +LL+ +VKP N +V+ + +NV+++
Sbjct: 355 YEDVDYTTKPLEVRRKLLESIVKP--------------NDYVKI----AHHIQVNNVEDL 396
Query: 406 EKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIGGYYG 462
+ FF I EG+++K +G + ++ G R W+KLK +Y +D +D++++GG+YG
Sbjct: 397 KSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYG 456
Query: 463 SGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYP 522
G+RGG+++ L+A A P DT F S C+V +G SDE+LD + KL R ++P
Sbjct: 457 KGKRGGKISSLLMA-AYNPKTDT----FESVCKVASGFSDEQLDELQKKLMEIKRDIKHP 511
Query: 523 KRAPPSFYQVTNNSKERPDVWIESPEKSIILS---ITSDIRTIRSEVFS--APYSLRFPR 577
+ NSK PD+W+E + I+ S + T +V A S+RFPR
Sbjct: 512 R----------VNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPR 561
Query: 578 IDRVRYDKPWHDCLDVQSFVELVH 601
R R DK D +E+ +
Sbjct: 562 FIRWRDDKSPEDATTTDEILEMYN 585
>sp|C3MJ14|DNLI_SULIL DNA ligase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1)
GN=lig PE=3 SV=1
Length = 601
Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 136/504 (26%), Positives = 238/504 (47%), Gaps = 63/504 (12%)
Query: 124 LTIKELNDLLDRLASSE---NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
L + E+ L ++A + +R KI +L+ L+KK + E K+++ + L++GI + +
Sbjct: 119 LKVDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDAT 178
Query: 181 IFHEF----------HPDAEDLFNVTCDLKLVCEKLKDRN-QRHKRQDIEVGKAVRPQLA 229
+ E +N+ DL + + + ++ + K EVG +RP LA
Sbjct: 179 VLDAMAIAFGGGQSASEIVERAYNLRADLGNIAKIIVEKGIEALKTLKPEVGIPIRPMLA 238
Query: 230 MRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIE 289
R+ + +K+ G +V + K+DG+R QIHK +I FSR + + + + I
Sbjct: 239 ERLSNPEEILKKVGGSALV-DYKYDGERAQIHKKDDKIFIFSRRLENITSQYPDVVEYIS 297
Query: 290 QNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDG----LSSDRQLCYFAFDVLY 345
+ I++GE++ D F QE+ R + + F FD++Y
Sbjct: 298 KYTEGKEFIIEGEIVAVDPESGEMRSF---QELMHRKRKSDIYEAIKEYPVNVFLFDLMY 354
Query: 346 VGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEV 405
D + L+ R +LL+ +VKP N +V+ + +NV+++
Sbjct: 355 YEDVDYTTKPLEVRRKLLESIVKP--------------NDYVKI----AHHIQVNNVEDL 396
Query: 406 EKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIGGYYG 462
+ FF I EG+++K +G + ++ G R W+KLK +Y +D +D++++GG+YG
Sbjct: 397 KSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYG 456
Query: 463 SGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYP 522
G+RGG+++ L+A A P DT F S C+V +G SDE+LD + KL R ++P
Sbjct: 457 KGKRGGKISSLLMA-AYNPKTDT----FESVCKVASGFSDEQLDELQKKLMEIKRDIKHP 511
Query: 523 KRAPPSFYQVTNNSKERPDVWIESPEKSIILS---ITSDIRTIRSEVFS--APYSLRFPR 577
+ NSK PD+W+E + I+ S + T +V A S+RFPR
Sbjct: 512 R----------VNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPR 561
Query: 578 IDRVRYDKPWHDCLDVQSFVELVH 601
R R DK D +E+ +
Sbjct: 562 FIRWRDDKSPEDATTTDEILEMYN 585
>sp|C4KIZ2|DNLI_SULIK DNA ligase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3)
GN=lig PE=3 SV=1
Length = 601
Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 136/504 (26%), Positives = 238/504 (47%), Gaps = 63/504 (12%)
Query: 124 LTIKELNDLLDRLASSE---NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
L + E+ L ++A + +R KI +L+ L+KK + E K+++ + L++GI + +
Sbjct: 119 LKVDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDAT 178
Query: 181 IFHEF----------HPDAEDLFNVTCDLKLVCEKLKDRN-QRHKRQDIEVGKAVRPQLA 229
+ E +N+ DL + + + ++ + K EVG +RP LA
Sbjct: 179 VLDAMAIAFGGGQSASEIVERAYNLRADLGNIAKIIVEKGIEALKTLKPEVGIPIRPMLA 238
Query: 230 MRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIE 289
R+ + +K+ G +V + K+DG+R QIHK +I FSR + + + + I
Sbjct: 239 ERLSNPEEILKKVGGSALV-DYKYDGERAQIHKKDDKIFIFSRRLENITSQYPDVVEYIS 297
Query: 290 QNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDG----LSSDRQLCYFAFDVLY 345
+ I++GE++ D F QE+ R + + F FD++Y
Sbjct: 298 KYTEGKEFIIEGEIVAVDPESGEMRSF---QELMHRKRKSDIYEAIKEYPVNVFLFDLMY 354
Query: 346 VGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEV 405
D + L+ R +LL+ +VKP N +V+ + +NV+++
Sbjct: 355 YEDVDYTTKPLEVRRKLLESIVKP--------------NDYVKI----AHHIQVNNVEDL 396
Query: 406 EKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIGGYYG 462
+ FF I EG+++K +G + ++ G R W+KLK +Y +D +D++++GG+YG
Sbjct: 397 KSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYG 456
Query: 463 SGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYP 522
G+RGG+++ L+A A P DT F S C+V +G SDE+LD + KL R ++P
Sbjct: 457 KGKRGGKISSLLMA-AYNPKTDT----FESVCKVASGFSDEQLDELQKKLMEIKRDIKHP 511
Query: 523 KRAPPSFYQVTNNSKERPDVWIESPEKSIILS---ITSDIRTIRSEVFS--APYSLRFPR 577
+ NSK PD+W+E + I+ S + T +V A S+RFPR
Sbjct: 512 R----------VNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPR 561
Query: 578 IDRVRYDKPWHDCLDVQSFVELVH 601
R R DK D +E+ +
Sbjct: 562 FIRWRDDKSPEDATTTDEILEMYN 585
>sp|C3MZR1|DNLI_SULIA DNA ligase OS=Sulfolobus islandicus (strain M.16.27) GN=lig PE=3
SV=1
Length = 601
Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 136/504 (26%), Positives = 238/504 (47%), Gaps = 63/504 (12%)
Query: 124 LTIKELNDLLDRLASSE---NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
L + E+ L ++A + +R KI +L+ L+KK + E K+++ + L++GI + +
Sbjct: 119 LKVDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDAT 178
Query: 181 IFHEF----------HPDAEDLFNVTCDLKLVCEKLKDRN-QRHKRQDIEVGKAVRPQLA 229
+ E +N+ DL + + + ++ + K EVG +RP LA
Sbjct: 179 VLDAMAIAFGGGQSASEIVERAYNLRADLGNIAKIIVEKGIEALKTLKPEVGIPIRPMLA 238
Query: 230 MRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIE 289
R+ + +K+ G +V + K+DG+R QIHK +I FSR + + + + I
Sbjct: 239 ERLSNPEEILKKVGGSALV-DYKYDGERAQIHKKDDKIFIFSRRLENITSQYPDVVEYIS 297
Query: 290 QNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDG----LSSDRQLCYFAFDVLY 345
+ I++GE++ D F QE+ R + + F FD++Y
Sbjct: 298 KYTEGKEFIIEGEIVAVDPESGEMRSF---QELMHRKRKSDIYEAIKEYPVNVFLFDLMY 354
Query: 346 VGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEV 405
D + L+ R +LL+ +VKP N +V+ + +NV+++
Sbjct: 355 YEDVDYTTKPLEVRRKLLESIVKP--------------NDYVKI----AHHIQVNNVEDL 396
Query: 406 EKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIGGYYG 462
+ FF I EG+++K +G + ++ G R W+KLK +Y +D +D++++GG+YG
Sbjct: 397 KSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYG 456
Query: 463 SGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYP 522
G+RGG+++ L+A A P DT F S C+V +G SDE+LD + KL R ++P
Sbjct: 457 KGKRGGKISSLLMA-AYNPKTDT----FESVCKVASGFSDEQLDELQKKLMEIKRDIKHP 511
Query: 523 KRAPPSFYQVTNNSKERPDVWIESPEKSIILS---ITSDIRTIRSEVFS--APYSLRFPR 577
+ NSK PD+W+E + I+ S + T +V A S+RFPR
Sbjct: 512 R----------VNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPR 561
Query: 578 IDRVRYDKPWHDCLDVQSFVELVH 601
R R DK D +E+ +
Sbjct: 562 FIRWRDDKSPEDATTTDEILEMYN 585
>sp|C3N834|DNLI_SULIY DNA ligase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone
#1) GN=lig PE=3 SV=1
Length = 601
Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 135/504 (26%), Positives = 238/504 (47%), Gaps = 63/504 (12%)
Query: 124 LTIKELNDLLDRLASSE---NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
L + E+ L ++A + +R KI +L+ L+KK + E K+++ + L++GI + +
Sbjct: 119 LKVDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDAT 178
Query: 181 IFHEF----------HPDAEDLFNVTCDLKLVCEKLKDRN-QRHKRQDIEVGKAVRPQLA 229
+ E +N+ DL + + + ++ + K EVG +RP LA
Sbjct: 179 VLDAMAIAFGGGQSASEIVERAYNLRADLGNIAKIIVEKGIEALKTLKPEVGIPIRPMLA 238
Query: 230 MRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIE 289
R+ + +K+ G +V + K+DG+R QIHK +I FSR + + + + I
Sbjct: 239 ERLSNPEEILKKVGGSALV-DYKYDGERAQIHKKDDKIFIFSRRLENITSQYPDVVEYIS 297
Query: 290 QNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDG----LSSDRQLCYFAFDVLY 345
+ I++GE++ D F QE+ R + + F FD++Y
Sbjct: 298 KYTEGKEFIIEGEIVAVDPESGEMRSF---QELMHRKRKSDIYEAIKEYPVNVFLFDLMY 354
Query: 346 VGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEV 405
D + L+ R +LL+ +VKP N +V+ + +N++++
Sbjct: 355 YEDVDYTTKPLEVRRKLLESIVKP--------------NDYVKI----AHHIQVNNIEDL 396
Query: 406 EKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIGGYYG 462
+ FF I EG+++K +G + ++ G R W+KLK +Y +D +D++++GG+YG
Sbjct: 397 KSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYG 456
Query: 463 SGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYP 522
G+RGG+++ L+A A P DT F S C+V +G SDE+LD + KL R ++P
Sbjct: 457 KGKRGGKISSLLMA-AYNPKTDT----FESVCKVASGFSDEQLDELQKKLMEIKRDIKHP 511
Query: 523 KRAPPSFYQVTNNSKERPDVWIESPEKSIILS---ITSDIRTIRSEVFS--APYSLRFPR 577
+ NSK PD+W+E + I+ S + T +V A S+RFPR
Sbjct: 512 R----------VNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPR 561
Query: 578 IDRVRYDKPWHDCLDVQSFVELVH 601
R R DK D +E+ +
Sbjct: 562 FIRWRDDKSPEDATTTDEILEMYN 585
>sp|C3NF77|DNLI_SULIN DNA ligase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone
#2) GN=lig PE=3 SV=1
Length = 601
Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 132/484 (27%), Positives = 229/484 (47%), Gaps = 60/484 (12%)
Query: 141 NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEF----------HPDAE 190
+R KI +L+ L+KK + E K+++ + L++GI + ++ E
Sbjct: 139 SRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVLDAMAIAFGGGQSASEIVE 198
Query: 191 DLFNVTCDLKLVCEKLKDRN-QRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVI 249
+N+ DL + + + ++ + K EVG +RP LA R+ + +K+ G +V
Sbjct: 199 RAYNLRADLGNIAKIIVEKGIEALKTLKPEVGIPIRPMLAERLSNPEEILKKVGGSALV- 257
Query: 250 ECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTS 309
+ K+DG+R QIHK +I FSR + + + + I + I++GE++ D
Sbjct: 258 DYKYDGERAQIHKKDDKIFIFSRRLENITSQYPDVVEYISKYTEGKEFIIEGEIVAVDPE 317
Query: 310 LNRFAEFGSNQEIAKAARDG----LSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQK 365
F QE+ R + + F FD++Y D + L+ R +LL+
Sbjct: 318 SGEIRSF---QELMHRKRKSDIYEAIKEYPVNVFLFDLMYYEDVDYTTKPLEVRRKLLES 374
Query: 366 VVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL 425
+VKP N +V+ + +NV++++ FF I EG+++K +
Sbjct: 375 IVKP--------------NDYVKI----AHHIQVNNVEDLKSFFYRAISEGGEGVMVKAI 416
Query: 426 G--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIGGYYGSGRRGGEVAQFLVALAERPA 482
G + ++ G R W+KLK +Y +D +D++++GG+YG G+RGG+++ L+A A P
Sbjct: 417 GKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMA-AYNPK 475
Query: 483 PDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDV 542
DT F S C+V +G SDE+LD + KL R ++P+ NSK PD+
Sbjct: 476 TDT----FESVCKVASGFSDEQLDELQKKLMEIKRDIKHPR----------VNSKMEPDI 521
Query: 543 WIESPEKSIILS---ITSDIRTIRSEVFS--APYSLRFPRIDRVRYDKPWHDCLDVQSFV 597
W+E + I+ S + T +V A S+RFPR R R DK D +
Sbjct: 522 WVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEIL 581
Query: 598 ELVH 601
E+ +
Sbjct: 582 EMYN 585
>sp|Q67480|DNLI_FOWPN DNA ligase OS=Fowlpox virus (strain NVSL) GN=LIG PE=3 SV=2
Length = 564
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/501 (26%), Positives = 227/501 (45%), Gaps = 57/501 (11%)
Query: 101 NAGNFPMVAAEVLQRRQGMI----SGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKT 156
N G+ V L++ + ++ LT+ E++ L RL++ ++I + +I +
Sbjct: 85 NIGDVAYVIGSFLKKSKSVVDYATESTLTLHEVDCFLTRLSTVTRENDQIKEIKKIIPRC 144
Query: 157 NAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQ 216
+++ II +I DL++ I K + H DA +F + +L+ V ++ + N +
Sbjct: 145 TPNDLRHIIRLIKHDLRMNIGPKHVLSGLHKDAYGIFKLCNNLEQVVQRSLEDNI---KP 201
Query: 217 DIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLD 276
IE+ ++P LA A +K +++E K+DG+RIQIHK+ YFSRS
Sbjct: 202 LIELMVPLQPMLASACKTFSEAVKKCPNG-IIVEFKYDGERIQIHKHDKNFKYFSRSLKP 260
Query: 277 HSEYGHAMSKIIEQNVLVDRC-------ILDGEMLVWDTSLNRFAEFGSNQEIAKAARDG 329
+ + K+ + L+DR ILDGE+++ DT N+ FG+ +
Sbjct: 261 ITPH-----KVTDFEELLDRAFPSAKNMILDGEIILIDTETNQPLPFGT----LGINKKS 311
Query: 330 LSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRP 389
+ + +C F FD LY DT +I + L ER ++ +K +P+ L S V+
Sbjct: 312 MYHNACVCIFIFDCLYFNDTVLIDKPLIERRNIIHANIKE--------IPNRILLSEVKN 363
Query: 390 QGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA- 448
+E+ K + EG VLKD +EPG R +WLK+K +Y+
Sbjct: 364 ISTD---------EELSKLLHIVLSKNIEGFVLKDAKGVYEPGMR--RWLKIKKDYLDGC 412
Query: 449 --GSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELD 506
D++++G YYG G + G ++ FL+ DT ++ + + G +D EL
Sbjct: 413 VMADKADLVVLGAYYGKGNKSGILSSFLMGCY-----DTKSEKWCTVTKCSGGHTDLELQ 467
Query: 507 AVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEV 566
+ L + + A P + + N PDV I + + I T S
Sbjct: 468 EINDNLSV----VPFDRNAIPDWLSI--NKIHYPDVIISDISLAPVWEIIGSEFTRSSTH 521
Query: 567 FSAPYSLRFPRIDRVRYDKPW 587
++ S+RFPR R+R DK +
Sbjct: 522 TASNISIRFPRCSRIREDKTY 542
>sp|P52496|DNLI4_CANAL DNA ligase 4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=LIG4 PE=2 SV=3
Length = 928
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 152/625 (24%), Positives = 277/625 (44%), Gaps = 87/625 (13%)
Query: 27 KKRSKFRKFLDTYCDSV--DYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDS 84
KK + F++T+ + D + + +LI P ++ Y +KE LA LI + K+S
Sbjct: 48 KKAFIIKTFINTFRTHIGNDIYPSAKLIFP--EKSGRIYFIKEVALARLLIKMYKIPKES 105
Query: 85 ADAVRLINWRKGGA--------APNAGNFPMVAAEVLQRRQGMISG--GLTIKELNDLLD 134
D + L +W K + P+ A+ ++ +R+ ++ T+ ++N LD
Sbjct: 106 EDYITLHDWNKSYQRSRRFSIDEKKIRDLPLQASRIISKRRPIVDKLEEYTVPQINSSLD 165
Query: 135 RLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFN 194
+LA + +I +L L + E++W+I I+L L E+ F+ +HPD +F+
Sbjct: 166 QLALEKVSQGQIDILKPLFDNLSIPEVRWLIHILLNKSILTSMERFFFNTWHPDGYRVFS 225
Query: 195 VTCDLKLVCEKLKDRNQRHKRQDIEVGKA--VRPQLAMRIGDAHAAW-RKLHGK------ 245
+ DL+ + + + R + + +PQL+ R+ ++ +KL K
Sbjct: 226 ICNDLQKTLQFSTNPDLRLDPSQLAIHPCFKFKPQLSERLTTSYKTLVKKLQRKHEMDPP 285
Query: 246 ------------EVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGH-----AMSKI 287
+ IE K DGDR+ +HK+G +FSR D+S YG A++K
Sbjct: 286 YEKKFQELGLENKFYIEEKMDGDRMLLHKDGDSFKFFSRRLKDYSYLYGESFQFGALTKF 345
Query: 288 IEQNVL--VDRCILDGEMLVWDTSLNRFAEFGS--NQEIAKAARDGLSSD---RQLCY-- 338
+ + ILDGEM+ +D N FG+ + I ++ R + D +Q Y
Sbjct: 346 LAHAFAGNIQSVILDGEMVAYDYERNVILPFGTLKSSAIQESVRQFTTIDQYEQQTAYPF 405
Query: 339 -FAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSL 397
FD+L++ + + L R +L ++++P R E L G +S
Sbjct: 406 FLVFDILFLNGKDLTNYPLFFRKNILNRILRPIPNRFEVLDTRLGSSS------------ 453
Query: 398 VAHNVDEVEKFFKETIENRDEGIVLKDLGSKWE-PGDRSGKWLKLKPEYI-RAGSDLDVL 455
+++E+ +E + +R EG+VLK++ SK+E G R+ W+K+KPEY+ + G +LD++
Sbjct: 454 -----EDIERAIREVVSSRCEGLVLKNVQSKYEIDGFRNPDWIKVKPEYLEKFGENLDLV 508
Query: 456 IIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPY 515
+I G+ ++ L Y SFC G+ EE D +
Sbjct: 509 VI------GKSPAIKNSYMCGLKSVTDGVYY-----SFCTCANGIEIEEFDKIERLTHGK 557
Query: 516 FRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITS-DIRTIRSEVFSAPYSLR 574
+ K + PP + + P WI P S++L I + I T ++ +L
Sbjct: 558 WIKTDVA--MPPE--SLIKFGTKIPTFWIH-PSDSLVLEIRARSIDTRAGTSYAVGSTLH 612
Query: 575 FPRIDRVRYDKPWHDCLDVQSFVEL 599
++R DK +C+ +Q + +
Sbjct: 613 NNHCRKIREDKSIDECVTLQEYTHI 637
>sp|Q8PVR7|DNLI1_METMA DNA ligase 1 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM
3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=lig1 PE=3
SV=1
Length = 579
Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 146/578 (25%), Positives = 269/578 (46%), Gaps = 93/578 (16%)
Query: 59 ERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQG 118
E + G+K+ + + A G++++ + RK A G+ VA E+ ++R+
Sbjct: 54 ENTTLGIKDMLAIRAIAGAYGVTRE--------DVRKRYA--RTGDLGDVAFELSKKRES 103
Query: 119 MISGGLTIKELNDLLDRLASSENRA---EKISVLSTLIKKTNAQEMKWIIMIILKDLKLG 175
LTI+++ L ++ + + EK ++ S +++K +E K+I+ ++L L+LG
Sbjct: 104 ----SLTIEDVFQRLLQIRETSGKGSQEEKTALFSDILQKATPEEGKYIVRLVLGRLRLG 159
Query: 176 ISEKSIFHEFH----------PDAEDLFNVTCDLKLVCEKLKDRNQRHKR-QDIEVGKAV 224
++ + F ++ ++V D+ + + L + R I+ G+ V
Sbjct: 160 FGDQFLLEAFAIAFTGDKKHAAKIKESYSVCTDIGELAKILAENGARATGFISIKPGRPV 219
Query: 225 RPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAM 284
+ L+ R+ +++ GK+ E K+DG+R+Q+HK G I FSR D + +
Sbjct: 220 KSMLSQRVESFEELEKRVKGKKAA-EEKYDGERVQVHKTGEGIKAFSRRLEDITSQYPEI 278
Query: 285 SKIIEQNVLVDRCILDGEMLVW---DTSLNRFAEFGSNQEIAKAARD-GLSSDRQLC--- 337
+ + + V + +LDGE++ + + + NR EF Q + + R + + R+ C
Sbjct: 279 IEDVRKTVPANEIVLDGEIVAYAELERNGNRIEEFYPFQNLMQRRRKYEIENYRKKCPVA 338
Query: 338 YFAFDVLYVGDTSVIHQSLKERHELLQ-KVVKPSKGRLETLVPDHGLNSHVRPQGEPCWS 396
F FD+LY+ ++ + ER LL+ VV+ RL
Sbjct: 339 VFFFDILYLNGEPLLKRPYPERRALLEMNVVESGIIRL-------------------SKR 379
Query: 397 LVAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKWLKLKPEYIRAGSD-LD 453
+V +V+E+E FF ETIE EGIV+K + S +E G RS W K K EY + D
Sbjct: 380 IVTESVEEIEDFFNETIEKGLEGIVVKSMSSNSYYEAGKRSWFWFKWKQEYSEGMRETFD 439
Query: 454 VLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLK 513
++++G YYG GRR G L A+ + +RF + +VGTG ++ + + + L
Sbjct: 440 LVVVGSYYGRGRRKGSFGALLCAVLNKEG-----QRFETLTKVGTGFTEADAEEINRLLS 494
Query: 514 PYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP--- 570
+ E PK V+ PD++IE ++++ + + SE+ ++P
Sbjct: 495 DHIVS-EIPK-------GVSIKKGMLPDIFIEP---AVVIEV------LGSEITNSPGHT 537
Query: 571 ---------YSLRFPRIDRVRYDKPWHDCLDVQSFVEL 599
+LRFPR R+R+DK +D + V+ +L
Sbjct: 538 AGEGEEETGLALRFPRFLRIRHDKTPYDAMTVKEVRDL 575
>sp|Q4JAM1|DNLI_SULAC DNA ligase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=lig PE=3
SV=1
Length = 598
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 141/507 (27%), Positives = 243/507 (47%), Gaps = 67/507 (13%)
Query: 124 LTIKELNDLLDRLASSE---NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
LT++E+ + L ++A SE +R KI L+ L+KK + E K+II I L++GI + +
Sbjct: 119 LTVEEVYESLSKIALSEGEGSRDMKIRSLAGLLKKADPLEAKYIIRFIDGRLRVGIGDAT 178
Query: 181 IFHEF----------HPDAEDLFNVTCDLKLVCEKLKDRN-QRHKRQDIEVGKAVRPQLA 229
I P E +N+ DL + + L + + K EVG +RP LA
Sbjct: 179 IMDALANVFGGGTAARPLIERAYNLRADLGNIAKLLAENGIETIKSIKPEVGIPIRPMLA 238
Query: 230 MRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIE 289
R+ D K+ GK +V + K+DG+R QIHK G +++ FSR + + + + I+
Sbjct: 239 ERLTDPSEILAKVGGKGIV-DYKYDGERAQIHKKGEKVYIFSRRLENITRQYPDVVEYIK 297
Query: 290 QNVLVDRCILDGEMLVWDTSLNRFAEFGS------NQEIAKAARDGLSSDRQLCYFAFDV 343
++ + IL+GE++ D F + +I +A + + + + FD+
Sbjct: 298 NSIKSNEVILEGEIVAIDKESGEILPFQNLMHRKRKNDIGEAIK-----EYPVNVYLFDL 352
Query: 344 LYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVD 403
+Y + L +R E L+++V + V DH V+
Sbjct: 353 MYNDGEDYTQKPLPDRREKLEEIVTQND---IVKVADHKY---------------IDKVN 394
Query: 404 EVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIGGY 460
E+ ++F + I + EG+++K +G S ++ G R W+KLK +Y +D +D++I+G +
Sbjct: 395 ELVEYFHQAISDGTEGVIVKSIGKDSIYQAGARGFLWIKLKKDYQSEMADSVDLVIVGAF 454
Query: 461 YGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYE 520
YG G+RGG+++ L+A A P DT F + C+V +G SD EL+ V + + +
Sbjct: 455 YGRGKRGGKLSSLLMA-AYDPDKDT----FYTVCKVASGFSDAELEEV----QKMLSEAK 505
Query: 521 YPKRAPPSFYQVTNNSKERPDVWIESPEKSIILS--IT-SDIRTIRSEVFS--APYSLRF 575
K+ P S+ +PD+W++ + I+ IT S + T V S A S+RF
Sbjct: 506 LDKKDPRV------ESEIQPDIWVKPKYVAEIIGAEITLSPLHTCCKGVVSEEAGLSIRF 559
Query: 576 PRIDRVRYDKPWHDCLDVQSFVELVHS 602
PR R R DK + +E+ S
Sbjct: 560 PRFIRWRDDKSVEEATTPNEILEMYQS 586
>sp|O67398|DNLI_AQUAE Probable DNA ligase OS=Aquifex aeolicus (strain VF5) GN=lig PE=3
SV=2
Length = 584
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 144/514 (28%), Positives = 240/514 (46%), Gaps = 83/514 (16%)
Query: 122 GGLTIKELNDLLDRLASS---ENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISE 178
G LT++E+ + L +A + ++ KIS+ ++L+KK E K+++ I + L+LGI +
Sbjct: 107 GTLTVEEVYNGLLNIAKAVGIGSQERKISIFASLLKKATPLEAKYLLRTITERLRLGIGD 166
Query: 179 KSIFHEF----------HPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQ-DIEVGKAVRPQ 227
+I E +N+T DL V + L ++ +Q I+VG+ VRP
Sbjct: 167 NTILEALSIAFTGSSVNREVVERAYNLTSDLGYVAKILAEKGLEGVKQVKIQVGRPVRPM 226
Query: 228 LAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLD----HSEYGHA 283
LA R+ RKL GK E K+DG+RIQ H+ G E + FSR + + +
Sbjct: 227 LAERMSSPILILRKLGGK-CGAEYKYDGERIQAHRKGDEFYLFSRRLENITHQYPDLIEF 285
Query: 284 MSKIIEQNVLV--DRCILD---GEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCY 338
+ + I + +V + ++D GE+ + ++R ++ + I K G
Sbjct: 286 LKEAIPHDFIVELEAVVIDPASGEIRPFQELMHRKVKYVTKYHITKYPVAG--------- 336
Query: 339 FAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLV 398
F FD++Y+ + + ER E+L+KVVK + R+ LVP +
Sbjct: 337 FLFDIIYLDGEDLTLKPYPERREILEKVVKRTD-RI-GLVPRK----------------I 378
Query: 399 AHNVDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVL 455
NV+++E FF + IE EG+V K L S ++ G R W+K K +Y +D LD++
Sbjct: 379 VDNVEDLENFFYQAIEEGCEGLVCKSLAPNSIYQAGKRGFLWIKYKRDYKSVLADTLDLV 438
Query: 456 IIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPY 515
++GG+YG G+R G L+A + P D F + +VGTG ++++ + L P
Sbjct: 439 VVGGFYGKGQRKGTFGSLLMACYD-PESDM----FKTVTKVGTGFTEDDFKKLEEILMPR 493
Query: 516 FRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPY---- 571
+ +P+ NS D+W E ++L IT T+ S V + +
Sbjct: 494 KLNHRHPR----------VNSILEADMWFEP---YLVLEITGAELTL-SPVHTCGWGKVS 539
Query: 572 -----SLRFPRID-RVRYDKPWHDCLDVQSFVEL 599
LRFPR R R+DK D Q +E+
Sbjct: 540 PNRGIGLRFPRFTGRYRFDKRPEDATTEQEIIEM 573
>sp|P49916|DNLI3_HUMAN DNA ligase 3 OS=Homo sapiens GN=LIG3 PE=1 SV=2
Length = 1009
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 137/496 (27%), Positives = 227/496 (45%), Gaps = 51/496 (10%)
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFH 183
LTI+E+++ L RL+ E+ L + + A ++K II +I DLK+ K +
Sbjct: 372 LTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLD 431
Query: 184 EFHPDAEDLFNVTCDLKLVCEKLKDRNQR-----HKRQDIEVGKA----VRPQLAMRIGD 234
P+A + F + +L+ V E++ Q +R+ + V + V+P LA
Sbjct: 432 ALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTPVQPMLAEACKS 491
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSF---LDHSEYGHAMSKIIEQN 291
A +K + E K+DG+R+Q+HKNG YFSRS L H + H I +
Sbjct: 492 VEYAMKKCPNG-MFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPH-KVAHFKDYIPQAF 549
Query: 292 VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSV 351
ILD E+L+ D + FG+ KAA D +C F FD +Y D S+
Sbjct: 550 PGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAA----FQDANVCLFVFDCIYFNDVSL 605
Query: 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKE 411
+ + L ER + L + +P+ + S ++ V +D +
Sbjct: 606 MDRPLCERRKFLHDNM--------VEIPNRIMFSEMK--------RVTKALD-LADMITR 648
Query: 412 TIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS---DLDVLIIGGYYGSGRRGG 468
I+ EG+VLKD+ +EPG R WLK+K +Y+ G+ D++++G +YG G +GG
Sbjct: 649 VIQEGLEGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGG 706
Query: 469 EVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPS 528
++ FL+ D +++ + + G D L + +L + + P + PS
Sbjct: 707 MMSIFLMGCY-----DPGSQKWCTVTKCAGGHDDATLARLQNELD-MVKISKDPSKI-PS 759
Query: 529 FYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP-YSLRFPRIDRVRYDKPW 587
+ +V N PD + P+K+ + IT +SE +A S+RFPR R+R DK W
Sbjct: 760 WLKV--NKIYYPDFIVPDPKKAAVWEITG-AEFSKSEAHTADGISIRFPRCTRIRDDKDW 816
Query: 588 HDCLDVQSFVELVHSS 603
++ EL S
Sbjct: 817 KSATNLPQLKELYQLS 832
>sp|A4YD25|DNLI_METS5 DNA ligase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348)
GN=lig PE=3 SV=1
Length = 598
Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 134/511 (26%), Positives = 245/511 (47%), Gaps = 78/511 (15%)
Query: 121 SGGLTIKELNDLLDRLASSE---NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGIS 177
+G L + E+ + L ++A+S +R KI + + LIKK E K+++ + L+LGI
Sbjct: 117 AGELDVMEVYNELVKIATSTGEGSRDIKIRIFAGLIKKATPIEAKYLVRFVEGRLRLGIG 176
Query: 178 EKSIFH----------EFHPDAEDLFNVTCDLKLVCEKLKDRN-QRHKRQDIEVGKAVRP 226
+ ++ ++ P E +N+ DL + + ++ K G +RP
Sbjct: 177 DATVLDALAITFGGSADYRPIVERAYNLRADLGDIARVIATEGIEKLKNISPTPGIPIRP 236
Query: 227 QLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSK 286
LA R+ D K++GK +V + K+DG+R QIH+ G ++ FSR + ++ +++
Sbjct: 237 MLAERLPDPEEIMEKMNGKALV-DYKYDGERAQIHRKGDKVTIFSRRMENITDQYIDVTE 295
Query: 287 IIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCY----FAFD 342
++Q V D I++GE++ D F QE+ R ++ Y F FD
Sbjct: 296 YVKQFVKGDNFIVEGEIVPVDPESGEMRPF---QELMHRRRKNNIAEAIKEYPVNLFLFD 352
Query: 343 VLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNV 402
+++ + L ER L++++ S ++ + SH+ +A V
Sbjct: 353 LMFFEGEDYTTKPLPERRAKLEEIL-ASNDKVH-------IASHI----------IADRV 394
Query: 403 DEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIGG 459
D++ ++F + I EG+++K +G S ++ G R W+KLK +Y +D +D++++G
Sbjct: 395 DKLREYFYQAISEGAEGVMVKSIGPDSIYQAGSRGWLWIKLKRDYQSEMADTVDLVVVGA 454
Query: 460 YYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKY 519
+YG G+RGG+ + L+A A P D F + C+V +G SD+ELD + K+ R+
Sbjct: 455 FYGKGKRGGKFSSLLMA-AYNPEKDV----FETVCKVASGFSDQELDEMQKKINELKREQ 509
Query: 520 EYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP--------- 570
++P+ S PDVW+ SP ++ +++ I +E+ +P
Sbjct: 510 KHPRVV----------SDMIPDVWV-SP------TLVAEV--IGAEITISPLHTCCRGEK 550
Query: 571 --YSLRFPRIDRVRYDKPWHDCLDVQSFVEL 599
S+RFPR R R DK D Q +E+
Sbjct: 551 GGLSIRFPRFIRWRDDKSPEDATTNQEIMEM 581
>sp|P12000|DNLI1_SCHPO DNA ligase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cdc17 PE=3 SV=1
Length = 768
Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 153/561 (27%), Positives = 241/561 (42%), Gaps = 88/561 (15%)
Query: 103 GNFPMVAAEVLQRRQGMIS-GGLTIKELNDLLDRLAS-----SENRAEKISVLSTLIKKT 156
G+ +VA Q + M LTI L D L ++A S+NR KI V+ L+
Sbjct: 237 GDLGLVAQTSRQNQPTMFKPAALTIPFLFDSLKKIAQMSGNQSQNR--KIGVIKRLLSSC 294
Query: 157 NAQEMKWIIMIILKDLKLGISEKSIF-------HEFHPDAED--------------LFNV 195
E K++I + L+L ++EK+I ++H D L +V
Sbjct: 295 EGAEPKYLIRALEGKLRLQLAEKTILVALANATAQYHADKNGEKLSQQDRIEGEQILRDV 354
Query: 196 TCDLK---LVCEKLKDRNQRHKRQDIEV--GKAVRPQLAMRIGDAHAAWRKLHGKEVVIE 250
C L L+ L + R+ ++ G +P LA E
Sbjct: 355 YCQLPSYDLIVPHLIEHGLGTLRETCKLTPGIPTKPMLAKPTKQISEVLNTFDQAAFTCE 414
Query: 251 CKFDGDRIQIH-KNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVD--RCILDGEMLVWD 307
K+DG+R Q+H + + FSR+ + S +S + + D ILD E + WD
Sbjct: 415 YKYDGERAQVHFTEDGKFYVFSRNSENMSVRYPDISVSVSKWKKPDARSFILDCEAVGWD 474
Query: 308 TSLNRFAEFGSNQEIAKAARDGLSSDR---QLCYFAFDVLYVGDTSVIHQSLKERHELLQ 364
N+ F Q++A R + + C FAFD+LY+ ++ L ER +LL
Sbjct: 475 RDENKILPF---QKLATRKRKDVKIGDIKVRACLFAFDILYLNGQPLLETPLNERRKLLY 531
Query: 365 KVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKD 424
+ +PS G D H + +++ +E+F +E++++ EG+++K
Sbjct: 532 SMFQPSTG-------DFTFAKHSDQK----------SIESIEEFLEESVKDSCEGLMVKM 574
Query: 425 L---GSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIGGYYGSGRRGGEVAQFLVALAER 480
L S +EP RS WLK+K +Y+ G LD+++IG YYG G+R FL+ +
Sbjct: 575 LEGPDSHYEPSKRSRHWLKVKKDYLSGVGDSLDLIVIGAYYGKGKRTSVYGAFLLGCYD- 633
Query: 481 PAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERP 540
PDT S C++GTG S+E L+ +LK + FY ++ +P
Sbjct: 634 --PDT--ETVQSICKLGTGFSEEHLETFYNQLK------DIVISKKKDFYAHSDVPAHQP 683
Query: 541 DVWIESPEKSIILSITSDIRTIRSEVFSAPY---------SLRFPRIDRVRYDKPWHDCL 591
DVW E K + + +D+ S V+ A SLRFPR R+R DK W D
Sbjct: 684 DVWFEP--KYLWEVLAADLSL--SPVYKAAIGYVQEDKGISLRFPRFIRIREDKSWEDAT 739
Query: 592 DVQSFVELVHSSNGTTQKGKE 612
+ E S +QK KE
Sbjct: 740 TSEQVSEFYRSQVAYSQKEKE 760
>sp|Q9YD18|DNLI_AERPE DNA ligase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 /
JCM 9820 / NBRC 100138 / K1) GN=lig PE=3 SV=2
Length = 602
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 140/523 (26%), Positives = 235/523 (44%), Gaps = 73/523 (13%)
Query: 109 AAEVLQRRQGMISGG--LTIKELNDLLDRLASSE---NRAEKISVLSTLIKKTNAQEMKW 163
AA + M GG LT++ + + L R+A ++ +R K+ +L+ L+ E K+
Sbjct: 106 AARAVTLEAFMAGGGEALTVRRVYNTLYRIAMAQGEGSRDIKLRLLAGLLADAEPVEAKY 165
Query: 164 IIMIILKDLKLGISEKSIFHEF----------HPDAEDLFNVTCDLKLVCEKLKDRNQRH 213
I+ + L++G+ + ++ P E +N+ DL + E +
Sbjct: 166 IVRFVEGRLRVGVGDATVLDALAMAFGGGAHARPVIERAYNLRADLGYIAEVVAREGVDA 225
Query: 214 KRQ-DIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSR 272
R +VG +RP LA R D RK+ G+ VV E K+DG+R QIHK E++ +SR
Sbjct: 226 LRGVKPQVGVPIRPMLAERGRDPAEILRKVGGRAVV-EYKYDGERAQIHKKDGEVYIYSR 284
Query: 273 SFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGS-NQEIAKAARDGLS 331
+ + + ++ + + I++GE++ D F Q K +
Sbjct: 285 RLENITRMFPDVVEMARKGLKAGEAIVEGEIVAVDPDNYEIQPFQVLMQRKRKHDIHRVM 344
Query: 332 SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQG 391
+ + F FD LYV + + L ER L+++V +ET
Sbjct: 345 REVPVAVFLFDALYVDGEDLTSKPLPERRRRLKEIV------VET--------------- 383
Query: 392 EPCWSLV----AHNVDEVEKFFKETIENRDEGIVLKDL--GSKWEPGDRSGKWLKLKPEY 445
P W L + +E+ FF + IE EG+++K + S + G R W+KLK +Y
Sbjct: 384 -PLWRLAESIETSDPEELWTFFLKAIEEGAEGVMVKAVHRDSVYTAGVRGWLWVKLKRDY 442
Query: 446 IRAGSD-LDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEE 504
D +D++++G +YG G+RGG+++ L+A A P D +P + C+V TG +DEE
Sbjct: 443 KSEMMDTVDLVVVGAFYGRGKRGGKLSSLLMA-AYDPDRDVFP----TVCKVATGFTDEE 497
Query: 505 LDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSI--------T 556
LD ++ +K+ P++ P S+ PDVW+E + IL T
Sbjct: 498 LD----RMNEMLKKHIIPRKHP------RVESRIEPDVWVEPALVAEILGAELTLSPMHT 547
Query: 557 SDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVEL 599
+ T+R V S+RFPR R R DK D +E+
Sbjct: 548 CCLNTVRPGV---GISIRFPRFIRWRDDKSPEDATTTHELLEM 587
>sp|P04819|DNLI1_YEAST DNA ligase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=CDC9 PE=1 SV=2
Length = 755
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 138/524 (26%), Positives = 228/524 (43%), Gaps = 84/524 (16%)
Query: 124 LTIKELNDLLDRLASSENR---AEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
LT+ E+ L +A ++ + +K+ ++ ++ E K++I + L++G++EK+
Sbjct: 259 LTVGEVFKNLRAIAKTQGKDSQLKKMKLIKRMLTACKGIEAKFLIRSLESKLRIGLAEKT 318
Query: 181 IF-------------HEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEV------- 220
+ E PD + +V L+ +K++D + +I +
Sbjct: 319 VLISLSKALLLHDENREDSPDKDVPMDV---LESAQQKIRDAFCQVPNYEIVINSCLEHG 375
Query: 221 ------------GKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHK-NGSEI 267
G ++P LA + + G+ E K+DG+R Q+H N +
Sbjct: 376 IMNLDKYCTLRPGIPLKPMLAKPTKAINEVLDRFQGETFTSEYKYDGERAQVHLLNDGTM 435
Query: 268 HYFSRSFLDHSE-YGHA-MSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKA 325
+SR+ + +E Y ++ I+ ILD E + WD + F Q ++
Sbjct: 436 RIYSRNGENMTERYPEINITDFIQDLDTTKNLILDCEAVAWDKDQGKILPF---QVLSTR 492
Query: 326 ARDGLSSDR---QLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHG 382
R + + ++C FAFD+L D +I++SLKER E L KV K G +
Sbjct: 493 KRKDVELNDVKVKVCLFAFDILCYNDERLINKSLKERREYLTKVTKVVPGEFQYAT---- 548
Query: 383 LNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL---GSKWEPGDRSGKWL 439
+ +N+DE++KF E++ + EG+++K L S +EP RS WL
Sbjct: 549 -------------QITTNNLDELQKFLDESVNHSCEGLMVKMLEGPESHYEPSKRSRNWL 595
Query: 440 KLKPEYIRA-GSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGT 498
KLK +Y+ G LD+ ++G YYG G+R G FL+ + + F + C++GT
Sbjct: 596 KLKKDYLEGVGDSLDLCVLGAYYGRGKRTGTYGGFLLGCYNQDTGE-----FETCCKIGT 650
Query: 499 GLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSI--- 555
G SDE L + +L P + PK +S PDVW E +L+
Sbjct: 651 GFSDEMLQLLHDRLTPTI--IDGPKAT------FVFDSSAEPDVWFEPTTLFEVLTADLS 702
Query: 556 TSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVEL 599
S I S F SLRFPR R+R DK D VEL
Sbjct: 703 LSPIYKAGSATFDKGVSLRFPRFLRIREDKGVEDATSSDQIVEL 746
>sp|Q9HH07|DNLI_THEFM DNA ligase OS=Thermococcus fumicolans GN=lig PE=3 SV=1
Length = 559
Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 134/490 (27%), Positives = 223/490 (45%), Gaps = 66/490 (13%)
Query: 124 LTIKELNDLLDRLASSENRA---EKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISE-- 178
LTIK + D ++A S+ K+ L+ L +E K+I +L ++ G++E
Sbjct: 111 LTIKRVYDTFVKVAESQGEGSQDRKMKYLANLFMDAQPEEAKYIARTVLGTMRTGVAEGI 170
Query: 179 --KSIFHEFHPDAEDL---FNVTCDLKLVCEKLK-DRNQRHKRQDIEVGKAVRPQLAMRI 232
+I F AE + + +T D V + K + N+ + I+VGK VRP LA
Sbjct: 171 LRDAIAEAFKVKAELVERAYMLTSDFGYVTKVAKLEGNEGLSKVRIQVGKPVRPMLAQNA 230
Query: 233 GDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNV 292
A ++ G E E K+DG R+Q+HK+G + +SR + + + + + +
Sbjct: 231 ASVKDALLEMGG-EAAFEIKYDGARVQVHKDGDRVVIYSRRLENVTRSIPEIVEAVRSQL 289
Query: 293 LVDRCILDGEML-VWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSV 351
++ I++GE++ V D R ++ + K + + L FDVLYV S+
Sbjct: 290 RPEKAIVEGELVAVGDGGKPRPFQYVLRRFRRKYNIEEMIERIPLELNLFDVLYVDGESL 349
Query: 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKE 411
+ ER + L++ V+ S+ R++ LV +E E+F++
Sbjct: 350 VDTPFMERRKRLEEAVEESE-RIKL-----------------AQQLVTKKAEEAEEFYRR 391
Query: 412 TIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVA 471
+E EG++ K L S +EPG+R KWLK+KP DLD++IIG +G GRR +
Sbjct: 392 ALELGHEGLMAKRLDSVYEPGNRGKKWLKIKPTM----EDLDLVIIGAEWGEGRRAHLLG 447
Query: 472 QFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYE--YPKRAPPSF 529
FLVA A D + F+ +VG+G +DE+L LKP + E Y + P
Sbjct: 448 SFLVA-----AYDQHRGEFVPVGKVGSGFTDEDLAEFTKMLKPLIVREEGKYVEIEPRVV 502
Query: 530 YQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHD 589
QVT ++ SP+ + + ++LRFPR +R DK +
Sbjct: 503 IQVTYQEIQK------SPK------------------YESGFALRFPRYVALREDKSPEE 538
Query: 590 CLDVQSFVEL 599
++ EL
Sbjct: 539 ADTIERISEL 548
>sp|O59288|DNLI_PYRHO Probable thermostable DNA ligase OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=lig PE=3 SV=1
Length = 559
Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 156/616 (25%), Positives = 277/616 (44%), Gaps = 97/616 (15%)
Query: 10 IVLVSLFNWIQKTKPAAKKRSKFRKFLDTYC-DSVDYFSALRL--ILPSLDRERGSYGLK 66
I L L+ ++KT K FL D +D+ L L + P D ER G+
Sbjct: 4 IELAQLYQKLEKTTMKLIKTRLVADFLKRVPEDHLDFIPYLILGDVFPEWD-ER-ELGVG 61
Query: 67 ESVLANCLIDALGMS-KDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQ--GMISGG 123
E +L + A G+ K+ ++V+ + G+ A ++RR+ S
Sbjct: 62 EKLLIKAVSMATGVDPKEIENSVK-----------DTGDLGESIALAIKRRKQKSFFSQP 110
Query: 124 LTIKELNDLLDRLASSE---NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISE-- 178
LTIK + L ++A + ++ +K+ L+ L E K++ +L ++ G++E
Sbjct: 111 LTIKRVYQTLVKIAETTGEGSQEKKMKYLANLFMDAEPLEAKYLARTVLGTMRTGVAEGL 170
Query: 179 --KSIFHEFHPDAEDL---FNVTCDLKLVCEKLK-DRNQRHKRQDIEVGKAVRPQLAMRI 232
+I FH E + + +T D V + K + N+ ++ I++GK ++P LA +
Sbjct: 171 LRDAIALAFHVKVELVERAYMLTSDFGFVAKIAKAEGNEGLEKVTIQLGKPIKPMLAQQA 230
Query: 233 GDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNV 292
+ A ++ G E E K+DG R+Q+HK+G ++ +SR + + + + I++ +
Sbjct: 231 ANIKEALLEMGG-EAEFEIKYDGARVQVHKDGEKVIIYSRRLENVTRAIPEIVEAIKEAI 289
Query: 293 LVDRCILDGEM---------LVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDV 343
++ I++GE+ L + L RF + +E+ K L+ FDV
Sbjct: 290 EPEKVIVEGELVAIGEEGRPLPFQYVLRRFRRKHNIEEMMKKIPLELN--------LFDV 341
Query: 344 LYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVD 403
LYV S + ER + L+++VKP+ G+++ +L+ N +
Sbjct: 342 LYVDGKSFVDTKFIERRKKLEEIVKPN-GKIKV-----------------AENLITKNAE 383
Query: 404 EVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGS 463
E EKF+K +E EG++ K L + +EPG+R KWLK+KP +LD++IIG +G
Sbjct: 384 EAEKFYKRALEMGHEGLMAKRLDAVYEPGNRGKKWLKIKPTM----ENLDLVIIGAEWGE 439
Query: 464 GRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPK 523
GRR F++ A D F+ +VG+G +D++L LKP K E +
Sbjct: 440 GRRAHLFGSFILG-----AYDPETGEFLEVGKVGSGFTDDDLVEFTKMLKPLIVKEEGKR 494
Query: 524 RAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRY 583
+P + IE + I +S + + ++LRFPR +R
Sbjct: 495 VVI------------QPKIVIEVTYQEIQ----------KSPKYRSGFALRFPRYVALRD 532
Query: 584 DKPWHDCLDVQSFVEL 599
DK D ++ +L
Sbjct: 533 DKGPEDADTIERIAQL 548
>sp|P97386|DNLI3_MOUSE DNA ligase 3 OS=Mus musculus GN=Lig3 PE=1 SV=2
Length = 1015
Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 135/496 (27%), Positives = 224/496 (45%), Gaps = 51/496 (10%)
Query: 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFH 183
LTI+E++ L L+ E+ L + + A ++K II +I DLK+ K +
Sbjct: 377 LTIQEVDAFLLHLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLD 436
Query: 184 EFHPDAEDLFNVTCDLKLVCEKLKDRNQ---------RHKRQDIEVGKAVRPQLAMRIGD 234
P+A + F + +L+ V E++ Q R R + V+P LA
Sbjct: 437 ALDPNAYEAFKASRNLQDVVERVLHNEQEVEKDPGRRRALRVQASLMTPVQPMLAEACKS 496
Query: 235 AHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSF---LDHSEYGHAMSKIIEQN 291
A +K + E K+DG+R+Q+HK G YFSRS L H + H I +
Sbjct: 497 IEYAMKKCPNG-MFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPH-KVAHFKDYIPKAF 554
Query: 292 VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSV 351
ILD E+L+ D + + FG+ KAA D +C F FD +Y D S+
Sbjct: 555 PGGQSMILDSEVLLIDNNTGKPLPFGTLGVHKKAA----FQDANVCLFVFDCIYFNDVSL 610
Query: 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKE 411
+ + L ER + L + + R+ + S ++ + + D + + +E
Sbjct: 611 MDRPLCERRKFLHDNMVEIRNRI--------MFSEMKQVTK-----ASDLADMINRVIRE 657
Query: 412 TIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS---DLDVLIIGGYYGSGRRGG 468
+ EG+VLKD+ +EPG R WLK+K +Y+ G+ D++++G +YG G +GG
Sbjct: 658 GL----EGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGG 711
Query: 469 EVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPS 528
++ FL+ + PD+ +++ + + G D L + +L K PS
Sbjct: 712 MMSIFLMGCYD---PDS--QKWCTVTKCAGGHDDATLARLQKEL--VMVKISKDPSKIPS 764
Query: 529 FYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP-YSLRFPRIDRVRYDKPW 587
+ ++ N PD + P+K+ + IT RSE +A S+RFPR R+R DK W
Sbjct: 765 WLKI--NKIYYPDFIVPDPKKAAVWEITG-AEFSRSEAHTADGISIRFPRCTRIRDDKDW 821
Query: 588 HDCLDVQSFVELVHSS 603
++ EL S
Sbjct: 822 KSATNLPQLKELYQLS 837
>sp|O57250|DNLI_VACCA DNA ligase OS=Vaccinia virus (strain Ankara) GN=LIG PE=3 SV=1
Length = 552
Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 144/584 (24%), Positives = 257/584 (44%), Gaps = 54/584 (9%)
Query: 25 AAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDS 84
A+ + K + D D D + ++L+LP LD + K+ + +I +
Sbjct: 17 ASGYKEKSKLIRDFITDRDDKYLIIKLLLPGLDDRIYNMNDKQIIKLYSII----FKQSQ 72
Query: 85 ADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSENRAE 144
D ++ + + G F E+ R + + LT++E++ L L+S +
Sbjct: 73 EDMLQDLGY--GYIGDTIRTFFKENTEIRPRDKSI----LTLEEVDSFLTTLSSVTKESH 126
Query: 145 KISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCE 204
+I +L+ + ++K ++M+I KDLK+ + + + P A D+F + +LK + E
Sbjct: 127 QIKLLTDIASVCTCNDLKCVVMLIDKDLKIKAGPRYVLNAISPHAYDVFRKSNNLKEIIE 186
Query: 205 KLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNG 264
+N I V + P LA + A++K + E K+DG+R+Q+HKN
Sbjct: 187 NASKQNL--DSISISVMTPINPMLAESCDSVNKAFKKFPSG-MFAEVKYDGERVQVHKNN 243
Query: 265 SEIHYFSRSF---LDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQE 321
+E +FSR+ L H + + I + +LD E+++ D N FGS
Sbjct: 244 NEFAFFSRNMKPVLSH-KVDYLKEYIPKAFKKATSIVLDSEIVLVDEH-NVPLPFGS--- 298
Query: 322 IAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDH 381
+ + +C F FD LY + L ER L+ V+ +P+
Sbjct: 299 -LGIHKKKEYKNSNMCLFVFDCLYFDGFDMTDIPLYERRSFLKDVM--------VEIPNR 349
Query: 382 GLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKL 441
+ S + N ++ + + + EG+VLKD+ +EPG R +WLK+
Sbjct: 350 IVFSELTN---------ISNESQLTDVLDDALTRKLEGLVLKDINGVYEPGKR--RWLKI 398
Query: 442 KPEYIRAGS---DLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGT 498
K +Y+ GS D++++G YYG G +GG +A FL+ + ++ + ++ C +
Sbjct: 399 KRDYLNEGSMADSADLVVLGAYYGKGAKGGIMAVFLMGCYD---DESGKWKTVTKC---S 452
Query: 499 GLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSD 558
G D L + +LK + + PK+ P + N PD +E P++S I I+
Sbjct: 453 GHDDNTLRELQDQLK-MIKINKDPKKIPE---WLVVNKIYIPDFVVEDPKQSQIWEISGA 508
Query: 559 IRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHS 602
T + S+RFPR R+R DK W + + V L S
Sbjct: 509 EFTSSKSHTANGISIRFPRFTRIREDKTWKESTHLNDLVNLTKS 552
>sp|P0CL75|DNLI_PYRAB DNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=lig PE=3
SV=1
Length = 559
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 157/616 (25%), Positives = 279/616 (45%), Gaps = 97/616 (15%)
Query: 10 IVLVSLFNWIQKTKPAAKKRSKFRKFLDTYC-DSVDYFSALRL--ILPSLDRERGSYGLK 66
I L L+ ++KT K FL D +++ L L + P D ER G+
Sbjct: 4 IELAQLYQKLEKTTMKLIKTRLVADFLKKVPEDHLEFIPYLILGDVFPEWD-ER-ELGVG 61
Query: 67 ESVLANCLIDALGM-SKDSADAVRLINWRKGGAAPNAGNF-PMVAAEVLQRRQ-GMISGG 123
E +L + A G+ SK+ ++V+ + G+ +A V +R+Q S
Sbjct: 62 EKLLIKAVSMATGIDSKEIENSVK-----------DTGDLGESIALAVKKRKQKSFFSQP 110
Query: 124 LTIKELNDLLDRLASSENRA---EKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISE-- 178
LTIK + L ++A + +K+ L+ L E K+I +L ++ G++E
Sbjct: 111 LTIKRVYQTLVKVAETTGEGSQDKKMKYLANLFMDAEPIEAKYIARTVLGTMRTGVAEGL 170
Query: 179 --KSIFHEFHPDAEDL---FNVTCDLKLVCEKLK-DRNQRHKRQDIEVGKAVRPQLAMRI 232
+I F+ E + + +T D V + K + N + I++GK ++P LA +
Sbjct: 171 LRDAISLAFNVKVELVERAYMLTSDFGFVAKIAKTEGNDGLAKVTIQIGKPIKPMLAQQA 230
Query: 233 GDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNV 292
+ A ++ G E E K+DG R+Q+HK+G ++ +SR + + + + I++ +
Sbjct: 231 ANIKEALLEMGG-EAEFEIKYDGARVQVHKDGEKVTIYSRRLENVTRAIPEIVEAIKEAL 289
Query: 293 LVDRCILDGEM---------LVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDV 343
+ I++GE+ L + L RF + +E+ + L+ FDV
Sbjct: 290 KPTKAIVEGELVAIGEDGRPLPFQYVLRRFRRKYNIEEMMEKIPLELN--------LFDV 341
Query: 344 LYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVD 403
LYV S+I ER + L+++V+ + G+++ +L+ NV+
Sbjct: 342 LYVDGVSLIDTKFMERRKKLEEIVE-TNGKVKI-----------------AENLITKNVE 383
Query: 404 EVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGS 463
E E+F+K +E EG++ K L + +EPG+R KWLK+KP +LD++IIG +G
Sbjct: 384 EAEQFYKRALEMGHEGLMAKRLDAVYEPGNRGKKWLKIKPTM----ENLDLVIIGAEWGE 439
Query: 464 GRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPK 523
GRR + F++ A D F+ +VG+G +D++L LKP K E +
Sbjct: 440 GRRAHLLGSFILG-----AYDPETGEFLEVGKVGSGFTDDDLVEFTKMLKPLIIKEEGKR 494
Query: 524 RAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRY 583
VWI+ K +I +I+ +S + + ++LRFPR +R
Sbjct: 495 ------------------VWIQP--KVVIEVTYQEIQ--KSPKYRSGFALRFPRYVALRE 532
Query: 584 DKPWHDCLDVQSFVEL 599
DK D ++ +L
Sbjct: 533 DKGPEDADTIERIAQL 548
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 253,106,521
Number of Sequences: 539616
Number of extensions: 11130779
Number of successful extensions: 28512
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 27522
Number of HSP's gapped (non-prelim): 224
length of query: 665
length of database: 191,569,459
effective HSP length: 124
effective length of query: 541
effective length of database: 124,657,075
effective search space: 67439477575
effective search space used: 67439477575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)