Query 006003
Match_columns 665
No_of_seqs 392 out of 1868
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:22:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l2p_A DNA ligase 3; DNA ligas 100.0 1E-107 4E-112 923.3 56.6 553 4-603 4-578 (579)
2 2hiv_A Thermostable DNA ligase 100.0 3E-101 1E-105 880.2 55.6 550 3-604 17-608 (621)
3 3gde_A DNA ligase; DNA-binding 100.0 1E-100 4E-105 863.6 51.4 529 7-604 4-553 (558)
4 2cfm_A Thermostable DNA ligase 100.0 3E-100 1E-104 863.8 50.4 532 7-603 1-552 (561)
5 1x9n_A DNA ligase I; 5'-adenyl 100.0 2E-100 6E-105 880.1 44.4 555 4-605 53-671 (688)
6 1vs0_A Putative DNA ligase-lik 100.0 5E-64 1.7E-68 529.7 24.5 307 218-592 3-309 (310)
7 1a0i_A DNA ligase; DNA replica 100.0 2.8E-54 9.5E-59 463.2 21.1 304 216-582 3-348 (348)
8 1fvi_A Chlorella virus DNA lig 100.0 6.8E-49 2.3E-53 411.6 20.6 265 223-587 2-297 (297)
9 4htp_A DNA ligase 4; helical d 100.0 9.1E-46 3.1E-50 375.3 20.8 215 1-216 8-238 (240)
10 1p16_A GTP--RNA, mRNA capping 100.0 8.8E-36 3E-40 324.0 17.9 314 194-604 20-365 (395)
11 1ckm_A MRNA capping enzyme; nu 100.0 4.5E-31 1.6E-35 279.9 18.9 168 242-457 72-248 (330)
12 3vnn_A DNA ligase 4; non-homol 100.0 5.6E-29 1.9E-33 231.5 9.8 127 247-376 1-135 (139)
13 3kyh_C MRNA-capping enzyme sub 99.9 3.3E-24 1.1E-28 232.9 9.9 187 240-458 60-264 (461)
14 3rtx_A MRNA-capping enzyme; gu 99.9 2.7E-24 9.3E-29 227.8 7.9 177 242-456 60-247 (343)
15 2vug_A PAB1020; RNA, ligase, A 99.5 1.6E-13 5.3E-18 147.8 17.3 155 244-445 94-253 (389)
16 3qwu_A DNA ligase; structural 99.4 1.4E-12 4.7E-17 137.5 14.8 151 238-426 66-222 (370)
17 1ta8_A DNA ligase, NAD-depende 98.1 6.4E-06 2.2E-10 86.1 9.2 173 245-444 113-319 (332)
18 1s68_A RNA ligase 2; ribonucle 98.0 7.3E-05 2.5E-09 75.7 15.2 106 242-366 25-145 (249)
19 2hvq_A ORF1, hypothetical 37.6 98.0 2.2E-05 7.7E-10 82.8 11.7 106 242-366 26-146 (335)
20 1b04_A Protein (DNA ligase); D 98.0 1.3E-05 4.5E-10 83.4 8.3 173 245-444 107-313 (318)
21 4glw_A DNA ligase; inhibitor, 97.6 0.00024 8.2E-09 73.8 11.7 155 243-426 100-281 (305)
22 4glx_A DNA ligase; inhibitor, 97.6 0.00025 8.6E-09 79.7 11.4 223 245-509 108-368 (586)
23 3uq8_A DNA ligase; adenylated 97.5 0.00089 3.1E-08 69.7 13.6 157 246-428 108-294 (322)
24 1zau_A DNA ligase; AMP; HET: D 97.5 1.9E-05 6.3E-10 82.6 0.2 167 245-438 116-319 (328)
25 1xk5_A Snurportin-1; protein-R 97.4 0.00023 8E-09 69.0 7.2 179 225-446 5-186 (204)
26 3jsl_A DNA ligase; NAD+-depend 97.4 0.00047 1.6E-08 71.6 9.5 158 244-428 104-288 (318)
27 3gjx_B Snurportin-1; transport 97.2 0.00097 3.3E-08 69.2 9.3 180 225-447 106-288 (365)
28 1xdn_A RNA editing ligase MP52 97.0 0.0013 4.4E-08 66.2 8.0 120 242-366 30-190 (277)
29 2owo_A DNA ligase; protein-DNA 97.0 0.003 1E-07 72.0 12.1 221 246-509 109-368 (671)
30 2c5u_A RNA ligase, T4 RNA liga 96.8 0.0088 3E-07 63.8 13.2 141 245-444 93-245 (375)
31 3sgi_A DNA ligase; HET: DNA AM 96.7 0.0032 1.1E-07 70.9 8.9 193 246-472 117-349 (615)
32 1dgs_A DNA ligase; AMP complex 96.5 0.006 2.1E-07 69.5 9.3 192 246-472 110-337 (667)
33 4e6n_A Metallophosphoesterase; 96.2 0.02 7E-07 59.6 10.4 182 234-428 67-336 (427)
34 2hiv_A Thermostable DNA ligase 94.1 0.039 1.3E-06 62.9 5.2 87 122-208 19-120 (621)
35 2cfm_A Thermostable DNA ligase 89.5 0.25 8.7E-06 55.5 4.8 85 125-209 2-100 (561)
36 3gde_A DNA ligase; DNA-binding 89.3 0.38 1.3E-05 53.9 6.0 85 124-208 4-103 (558)
37 1x9n_A DNA ligase I; 5'-adenyl 85.8 0.59 2E-05 53.8 4.9 86 121-206 53-155 (688)
38 4htp_A DNA ligase 4; helical d 65.4 7.5 0.00025 38.5 5.6 87 121-207 11-133 (240)
39 3l2p_A DNA ligase 3; DNA ligas 44.1 25 0.00086 39.3 5.9 85 122-207 5-104 (579)
40 3b4u_A Dihydrodipicolinate syn 28.2 96 0.0033 31.2 6.8 57 352-425 51-107 (294)
41 3dz1_A Dihydrodipicolinate syn 23.6 1.3E+02 0.0043 30.6 6.7 56 352-425 56-111 (313)
42 3s5o_A 4-hydroxy-2-oxoglutarat 23.3 1.1E+02 0.0039 30.9 6.2 57 352-425 62-118 (307)
43 3na8_A Putative dihydrodipicol 23.3 85 0.0029 32.0 5.3 57 352-425 72-128 (315)
44 3qze_A DHDPS, dihydrodipicolin 21.5 1.2E+02 0.0042 30.7 6.1 57 352-425 71-127 (314)
45 3flu_A DHDPS, dihydrodipicolin 21.5 1.2E+02 0.0043 30.4 6.1 60 348-425 52-111 (297)
46 3cpr_A Dihydrodipicolinate syn 21.0 1.5E+02 0.005 30.0 6.5 57 352-425 64-120 (304)
47 2ehh_A DHDPS, dihydrodipicolin 20.8 1.4E+02 0.0047 30.0 6.3 57 352-425 48-104 (294)
48 3tak_A DHDPS, dihydrodipicolin 20.7 1.2E+02 0.0042 30.3 5.8 57 352-425 49-105 (291)
49 3l21_A DHDPS, dihydrodipicolin 20.2 1.2E+02 0.0042 30.6 5.7 57 352-425 63-119 (304)
No 1
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-107 Score=923.30 Aligned_cols=553 Identities=25% Similarity=0.415 Sum_probs=451.0
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCC----chHhhhHhhcCCCCCCCccccCCCHHHHHHHHHHHhC
Q 006003 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDS----VDYFSALRLILPSLDRERGSYGLKESVLANCLIDALG 79 (665)
Q Consensus 4 ~~~~~F~~l~~~~e~i~~~~~~~~k~~~l~~~~~~~~~~----~~~~~~lrLllp~~d~~r~~yglke~~L~k~~~~~~~ 79 (665)
.++|+|++||++|++|++++++.+|+++|++||.+|..+ .++||++|+|+|+.|+ ++|||+|++|+|+|++++|
T Consensus 4 ~~d~~F~~f~~l~~~ie~~s~r~~k~~il~~~~~~~~~~~~~~~~~y~~~~~l~P~~~~--~~~gi~ek~l~k~~~~~~g 81 (579)
T 3l2p_A 4 HKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLPGVIK--TVYNLNDKQIVKLFSRIFN 81 (579)
T ss_dssp SGGGBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCC-------CCHHHHHHHHCTTTSC--CCCSCCHHHHHHHHHHHHT
T ss_pred cccCcHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCcccccchHHHHHHHhCCCccC--cccCCcHHHHHHHHHHHHC
Confidence 457999999999999999999999999999999998543 5899999999999974 6999999999999999999
Q ss_pred CCcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhc--cCC-CCCCCCHHHHHHHHHHHHhhhhHHhHHHHHHHHHHhC
Q 006003 80 MSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRR--QGM-ISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKT 156 (665)
Q Consensus 80 ~~~~~~~~~~L~~wk~~~~~~~~gD~~~~~~~v~~~r--~~~-~~~~lTi~eV~~~Ld~la~~~~~~~k~~~l~~ll~~~ 156 (665)
++.++ ..++ | ..||||.+|..++..+ +.. .+++|||.|||+.|++||+.++...+.++|+.|+.+|
T Consensus 82 ~~~~~--~~~~--~-------~~GD~~~~~~~~~~~~~~~~~~~~~~LTv~~V~~~L~~ia~~~g~~sq~~~l~~l~~~~ 150 (579)
T 3l2p_A 82 CNPDD--MARD--L-------EQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRC 150 (579)
T ss_dssp SCHHH--HHHH--G-------GGSCHHHHHHHHHHSCSSSCCCSSCCCBHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTC
T ss_pred cCHHH--HHHH--H-------HcCCHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHhccCcHHHHHHHHHHHHhC
Confidence 98753 3333 3 2599999988776543 322 3579999999999999999999888889999999999
Q ss_pred CHHHHHHHHHHHHhhhccCCcccccccccCcCHHHHHhhhCCHHHHHHHHhhhhh---------ccccCCccCCCccccc
Q 006003 157 NAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQ---------RHKRQDIEVGKAVRPQ 227 (665)
Q Consensus 157 t~~E~k~l~RiilkdlriG~~e~til~~~hp~a~~~~~~~~dL~~v~~~l~~~~~---------~~~~~~i~~g~~~~Pm 227 (665)
||.|+|||+|+|+++||+|++++||+.+|||+|.++|++++||+.||+.+.+... .+....+.+|.||+||
T Consensus 151 ~~~E~k~l~R~i~~~lriG~~e~~vl~a~~~~a~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~PM 230 (579)
T 3l2p_A 151 TANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTPVQPM 230 (579)
T ss_dssp CSHHHHHHHHHHTTCCSSSCCHHHHHHTTCTTHHHHHHHSCCHHHHHHHHHHHHHSCC--------CCCCCCTTSCCCCC
T ss_pred CHHHHHHHHHHHHhhhhcccchhHHHHHhCHHHHHHHhhcCCHHHHHHHHHhhchhhhcccccccccccccCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999988764321 1223457889999999
Q ss_pred cccccCCHHHHHHHhcCCceEEEEeeceeEEEEEEeCCEEEEEecCCCCCCc-chhhhHHHHHhhc-cccceeeeceEEE
Q 006003 228 LAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHAMSKIIEQNV-LVDRCILDGEMLV 305 (665)
Q Consensus 228 LA~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qih~~g~~v~~~SR~g~d~t~-~~p~l~~~~~~~~-~~~~~ILDGElv~ 305 (665)
||+++.+++++++++.+ .|++|+||||+|||+|++|+++++|||||++++. ..+.+.+.+...+ ...++|||||||+
T Consensus 231 LA~~~~~~~~~~~~~~~-~~~~E~K~DG~R~qih~~g~~v~l~SR~g~~~~p~~~~~l~~~l~~~~~~~~~~iLDGElv~ 309 (579)
T 3l2p_A 231 LAEACKSVEYAMKKCPN-GMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLL 309 (579)
T ss_dssp EEEECCCHHHHHHHCTT-CEEEEECCCSEEEEEEEETTEEEEECTTSCBCCGGGTTTGGGTHHHHSTTCSEEEEEEEEEE
T ss_pred cCCcCCCHHHHHhhCCC-CeEEEEccCcEEEEEEEECCEEEEECCCCCccChhHHHHHHHHHHHhcCcCCceEEEeEEEE
Confidence 99999999888888754 7999999999999999999999999999999842 2223333332223 2468999999999
Q ss_pred eeCCCCccccccchHHHHHHhhcCCCCCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCCcceecccCCCCCc
Q 006003 306 WDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNS 385 (665)
Q Consensus 306 ~d~~~~~~~~F~~lq~~~~~~~~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~ 385 (665)
||+.+++++||+.++...+.. ..+.+++|++|||||+||+++++.||.+||++|++++.+.++++.+..
T Consensus 310 ~d~~~g~~~~F~~L~~~~~~~----~~~~~v~~~vFDlL~l~G~~L~~~Pl~eRr~~L~~~~~~~~~~i~~~~------- 378 (579)
T 3l2p_A 310 IDNKTGKPLPFGTLGVHKKAA----FQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSE------- 378 (579)
T ss_dssp BCTTTCCBCCGGGGSHHHHHH----CSSCCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHCCCBTTTEEECC-------
T ss_pred EeCCCCcccCHHHHHHHhhhh----cccCCeEEEEEEeeccCCCccccCCHHHHHHHHHHHhhcCCCeEEEee-------
Confidence 998778889999987543322 124689999999999999999999999999999999987766654321
Q ss_pred cccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecCCCCCccCCCCCCeEEEccccccC---CCcceEEEEEEEec
Q 006003 386 HVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA---GSDLDVLIIGGYYG 462 (665)
Q Consensus 386 ~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~~s~Y~~GkRs~~WlKiK~~y~~~---g~~~DlvVIG~~~G 462 (665)
+..+.+.+++.++|++++++|+||||+|+++|+|+||+| +|+|+|++|+++ ++++|+||||+++|
T Consensus 379 ----------~~~~~~~~~~~~~~~~a~~~g~EGlv~K~~ds~Y~~Grr--~WlK~K~~y~~~g~~~~t~D~vViG~~~G 446 (579)
T 3l2p_A 379 ----------MKRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYG 446 (579)
T ss_dssp ----------EEEECSHHHHHHHHHHHHHTTCCCEEEEESSCCCCTTCE--EEEEECTTTCC---CCEEEEEEEEEEECC
T ss_pred ----------eEEcCCHHHHHHHHHHHHHhCCCceEEecCcCCCCCCCe--eeEEEechhhccccccccccEEEEEEEeC
Confidence 223467889999999999999999999999999999988 899999999974 57999999999999
Q ss_pred CCCCCCccceEEEEEeeCCCCCCCCcceEEEEEeccCCCHHHHHHHHHhhccccccccCCCCCCCCceeecCCCCCCCcE
Q 006003 463 SGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDV 542 (665)
Q Consensus 463 ~g~r~g~~~sfllg~~d~~~~~~~~~~~~~~~kVgsG~s~~~~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~pd~ 542 (665)
+|+++|.+|+|+||++|+++ ++|+++||||||||++++++|.+.|.+++... +...+|.|+... ....||+
T Consensus 447 ~Gkr~g~~g~lllg~~d~~~-----~~l~~vgkvgtGftd~~l~~l~~~l~~~~~~~--~~~~~~~~~~~~--~~~~pd~ 517 (579)
T 3l2p_A 447 QGSKGGMMSIFLMGCYDPGS-----QKWCTVTKCAGGHDDATLARLQNELDMVKISK--DPSKIPSWLKVN--KIYYPDF 517 (579)
T ss_dssp CTTSCSSCCEEEEEEECTTT-----SSEEEEEEECTTCCHHHHHHTTTSSCCCCCCC-----------------------
T ss_pred CCCCCCceeEEEEEEEeCCC-----CeEEEecCccCCCCHHHHHHHHHHhhcccccc--CCccCCceeecC--CCCCCcE
Confidence 99999999999999998653 37999999999999999999999999987542 112245676553 3568999
Q ss_pred EEeCCCceEEEEEeeeceecccCccC-CCeeeeccEEEEEecCCCccCCCCHHHHHHHHHcc
Q 006003 543 WIESPEKSIILSITSDIRTIRSEVFS-APYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 603 (665)
Q Consensus 543 wi~~P~~s~v~ev~a~~~~~~s~~~~-~g~sLRfPr~~riR~DK~~~d~~t~~el~~l~~~~ 603 (665)
|+..|+.++|+||+++..+ .|+.|+ .|++||||||.|+|+||+|+||+|++++.+||+.+
T Consensus 518 ~~~~P~~~~V~Ei~~~~i~-~S~~~~~~G~sLRFPR~~riR~DK~~~ea~t~~~l~~l~~~~ 578 (579)
T 3l2p_A 518 IVPDPKKAAVWEITGAEFS-KSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLS 578 (579)
T ss_dssp -------CEEEEEEESCEE-ECTTSSSTTEEESSCEECCCCSSCCSSSSCBHHHHHHHHHTC
T ss_pred EEecCCCCeEEEEEeeEEe-ecCCcccCCEEEECCeEEEEeCCCChHHCCCHHHHHHHHhhc
Confidence 9844888899999965443 567665 79999999999999999999999999999999754
No 2
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=100.00 E-value=2.9e-101 Score=880.24 Aligned_cols=550 Identities=26% Similarity=0.473 Sum_probs=471.0
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCchHhhhHhhc----CCCCCCCccccCCCHHHHHHHHHHHh
Q 006003 3 KTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLI----LPSLDRERGSYGLKESVLANCLIDAL 78 (665)
Q Consensus 3 ~~~~~~F~~l~~~~e~i~~~~~~~~k~~~l~~~~~~~~~~~~~~~~lrLl----lp~~d~~r~~yglke~~L~k~~~~~~ 78 (665)
...+|+|..||++|++|++++++.+|+++|.+||.++ .+++++++++|+ +|+.+. |++|||+++.|++++++++
T Consensus 17 ~~~~~~f~~~~~~~~~l~~t~~r~~k~~~l~~~~~~~-~~~d~~~~~~ll~~~l~P~~~~-~~~~gi~~~~L~k~~~~~~ 94 (621)
T 2hiv_A 17 RGSHMEFKVIAEYFDKLEKISSRLQLTALLADLLSKS-DKTIIDKVVYIIQGKLWPDFLG-YPELGIGEKFLIKAISIAT 94 (621)
T ss_dssp ----CBTHHHHHHHHHHHHCCCHHHHHHHHHHHHHTS-CGGGHHHHHHHTTTCSSCGGGC-CCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHhc-CchHHHHHHHHHhCCcCccccc-ccccCCCHHHHHHHHHHHH
Confidence 3567999999999999999999999999999999986 578899999997 566663 4489999999999999999
Q ss_pred CCCcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhccC--C-------CCCCCCHHHHHHHHHHHHhhhh---HHhHH
Q 006003 79 GMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQG--M-------ISGGLTIKELNDLLDRLASSEN---RAEKI 146 (665)
Q Consensus 79 ~~~~~~~~~~~L~~wk~~~~~~~~gD~~~~~~~v~~~r~~--~-------~~~~lTi~eV~~~Ld~la~~~~---~~~k~ 146 (665)
|++++.... .| ...||||++|+.+++++.. . .+++|||.+||+.|++||..++ +++|.
T Consensus 95 g~~~~~~~~----~~------~~~GDlg~~a~~~~~~~~~~~~~~f~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~ 164 (621)
T 2hiv_A 95 NTDENSVEN----LY------KTIGDLGEVARRLKSKQQSTGILGFLGTTSKESLTVDEVYSTLSKVALTTGEGSRDLKI 164 (621)
T ss_dssp TCCHHHHHH----HH------HHHCCHHHHHHHHHHTC-------------CCCCBHHHHHHHHHHHHHCCSTTHHHHHH
T ss_pred CcCHHHHHH----HH------HhcCCHHHHHHHHHhhccccccccccccCCCCCCcHHHHHHHHHHHHhccCcccHHHHH
Confidence 999764432 23 3479999999999987752 1 3678999999999999999876 46788
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhhccCCcccccccc----c------CcCHHHHHhhhCCHHHHHHHHhhhh-hcccc
Q 006003 147 SVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHE----F------HPDAEDLFNVTCDLKLVCEKLKDRN-QRHKR 215 (665)
Q Consensus 147 ~~l~~ll~~~t~~E~k~l~RiilkdlriG~~e~til~~----~------hp~a~~~~~~~~dL~~v~~~l~~~~-~~~~~ 215 (665)
.+|..|+.+||+.|++||+|+|+++||||+++++|+.+ | |++++++|+.++||+.||+.|.++. .++..
T Consensus 165 ~~l~~ll~~~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~v~~~~~~~~dl~~v~~~l~~~g~~~l~~ 244 (621)
T 2hiv_A 165 RLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVLDAMAIAFGGGQSASEIIERAYNLRADLGNIAKIIVEKGIEALKT 244 (621)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHSSSGGGHHHHHHHHHHSCCHHHHHHHHHHHCGGGGTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCCccCccHHHHHHHHHHHhccccccHHHHHHHHhcCCCHHHHHHHHHhcCcccccc
Confidence 99999999999999999999999999999999999984 3 3568889999999999999998743 45677
Q ss_pred CCccCCCccccccccccCCHHHHHHHhcCCceEEEEeeceeEEEEEEeCCEEEEEecCCCCCCcchhhhHHHHHhhcccc
Q 006003 216 QDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVD 295 (665)
Q Consensus 216 ~~i~~g~~~~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qih~~g~~v~~~SR~g~d~t~~~p~l~~~~~~~~~~~ 295 (665)
..+++|.|++||||++..+++++++++.+ +|++|+||||+|||+|++|+++++|||||+++|..||++.+.+.+.+...
T Consensus 245 ~~~~~~~pv~PmLA~~~~~~~~~l~~~~~-~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~~~t~~fP~l~~~~~~~l~~~ 323 (621)
T 2hiv_A 245 LKPQVGIPIRPMLAERLSNPEEILKKMGG-NAIVDYKYDGERAQIHKKEDKIFIFSRRLENITSQYPDVVDYVSKYIEGK 323 (621)
T ss_dssp CCCCTTSCCCCCEEEECSCHHHHHHHTTT-CEEEEEECSSEEEEEEEETTEEEEECTTCCBCGGGCHHHHHHHHHHBCCS
T ss_pred CCCCCCCCCCCeeCCccCchhHHHhhcCC-cEEEEEEEcceeEEEEEcCCEEEEEcCCCcCcHhhhhhHHHHHHHhCCCc
Confidence 88999999999999999988888888864 79999999999999999999999999999999999999988765455557
Q ss_pred ceeeeceEEEeeCCCCccccccchHHHHHHhhcCC---CCCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCC
Q 006003 296 RCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGL---SSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKG 372 (665)
Q Consensus 296 ~~ILDGElv~~d~~~~~~~~F~~lq~~~~~~~~~~---~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~ 372 (665)
++|||||||+||+.+++++||+.+|.. ++ +... ....+++|++|||||+||+++++.||.+|+++|++++.+. +
T Consensus 324 ~~iLDGElv~~d~~~g~~l~F~~L~~r-~~-~~~~~~~~~~~~v~~~vFDlL~l~G~~l~~~pl~eRr~~L~~~~~~~-~ 400 (621)
T 2hiv_A 324 EFIIEGEIVAIDPESGEMRPFQELMHR-KR-KSDIYEAIKEYPVNVFLFDLMYYEDVDYTTKPLEARRKLLESIVKPN-D 400 (621)
T ss_dssp SEEEEEEEEEBCTTTCCBCCTHHHHHH-HH-CSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-S
T ss_pred CeEEeEEEEEeecCCCCcCCHHHHhhh-cc-ccchhhhcccCceEEEEEeccccCCCccccCCHHHHHHHHHHHhCcC-C
Confidence 999999999999767788899888765 21 1110 0136899999999999999999999999999999999764 4
Q ss_pred cceecccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecC--CCCCccCCCCCCeEEEccccccC-C
Q 006003 373 RLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL--GSKWEPGDRSGKWLKLKPEYIRA-G 449 (665)
Q Consensus 373 ~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~--~s~Y~~GkRs~~WlKiK~~y~~~-g 449 (665)
++.+. .+..+++.++++++|++++++|+||||+|++ +|+|++|+|+.+|+|+|++|+++ |
T Consensus 401 ~i~~~-----------------~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~~~ds~Y~~G~Rs~~WlK~K~~~~~~~~ 463 (621)
T 2hiv_A 401 YVKIA-----------------HHIQANNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMA 463 (621)
T ss_dssp SEEEC-----------------CEEEESSHHHHHHHHHHHHHTTCCEEEEECCSTTCCCCTTCEEEEEEEEETTCTTSSC
T ss_pred cEEEe-----------------eeEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCCCccCCCcCCCeEEEechhccCcC
Confidence 44332 1345678999999999999999999999999 99999999999999999999984 7
Q ss_pred CcceEEEEEEEecCCCCCCccceEEEEEeeCCCCCCCCcceEEEEEeccCCCHHHHHHHHHhhccccccccCCCCCCCCc
Q 006003 450 SDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSF 529 (665)
Q Consensus 450 ~~~DlvVIG~~~G~g~r~g~~~sfllg~~d~~~~~~~~~~~~~~~kVgsG~s~~~~~~l~~~l~~~~~~~~~~~~~pp~~ 529 (665)
+++|+||||+++|+|+++|.+|+|+||++++++ +.|+++||||||||++++++|.+.+++++... .||.+
T Consensus 464 dt~D~vViG~~~g~Gkr~g~~g~lllg~~d~~~-----~~l~~vgkvgtGftd~~~~~l~~~l~~~~~~~-----~p~~~ 533 (621)
T 2hiv_A 464 DTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKT-----DSFESVCKVASGFSDEQLDELQKKLMEIKRDV-----KHPRV 533 (621)
T ss_dssp EEEEEEEEEEEECSGGGTTSEEEEEEEEEETTT-----TEEEEEEEECBSCCHHHHHHHHHHHHTTEESS-----CCTTE
T ss_pred ceeEEEEEEEEcCCCCCCCcccceEEEEEeCCC-----CeEEEEeeeCCCCCHHHHHHHHHHHhhhccCC-----CCCCc
Confidence 899999999999999999999999999998753 38999999999999999999999999988652 24432
Q ss_pred eeecCCCCCCCcEEEeCCCceEEEEEeeeceecccCccC---------CCeeeeccEEEEEecCCCccCCCCHHHHHHHH
Q 006003 530 YQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFS---------APYSLRFPRIDRVRYDKPWHDCLDVQSFVELV 600 (665)
Q Consensus 530 ~~~~~~~~~~pd~wi~~P~~s~v~ev~a~~~~~~s~~~~---------~g~sLRfPr~~riR~DK~~~d~~t~~el~~l~ 600 (665)
. ...+|++||+ |. .|+||+++..+ .|..|+ .|++||||||+|+|+||+|+||+|++++.+|+
T Consensus 534 ~-----~~~~~~vwv~-P~--~V~EV~~~~~t-~s~~~~a~~~~~~~~~G~sLRfPrf~r~R~DK~~~ea~t~~~l~~l~ 604 (621)
T 2hiv_A 534 N-----SKMEPDIWVE-PV--YVAEIIGSEIT-ISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMY 604 (621)
T ss_dssp E-----CSSCCSEEEC-SC--CEEEEEESEEE-EETTCCTTTTTSSTTCEEEEESCEEEEECTTCCGGGSCBHHHHHHHH
T ss_pred c-----cCCCceEEec-Cc--eEEEEEEEEEE-cCcccccccccccCCCCceEEcCEEEEEeCCCChHHCCCHHHHHHHH
Confidence 1 2467999999 74 69999875433 567777 68999999999999999999999999999999
Q ss_pred HccC
Q 006003 601 HSSN 604 (665)
Q Consensus 601 ~~~~ 604 (665)
+.+.
T Consensus 605 ~~q~ 608 (621)
T 2hiv_A 605 NKQP 608 (621)
T ss_dssp HHSC
T ss_pred HHhh
Confidence 8665
No 3
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.2e-100 Score=863.61 Aligned_cols=529 Identities=24% Similarity=0.421 Sum_probs=456.3
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCc-hHhhhHhhc----CCCCCCCccccCCCHHHHHHHHHHHhCCC
Q 006003 7 TEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSV-DYFSALRLI----LPSLDRERGSYGLKESVLANCLIDALGMS 81 (665)
Q Consensus 7 ~~F~~l~~~~e~i~~~~~~~~k~~~l~~~~~~~~~~~-~~~~~lrLl----lp~~d~~r~~yglke~~L~k~~~~~~~~~ 81 (665)
|+|..||++|++|++++++.+|+++|++||.++. ++ +++++++|+ +|+.+ +++|||+++.|++++++++|++
T Consensus 4 m~~~~~a~~~~~i~~t~~r~~k~~~l~~~~~~~~-~~~~~~~~~~l~~g~~~p~~~--~~~~gi~~~~l~~~~~~~~g~~ 80 (558)
T 3gde_A 4 MLFAEFAEFCERLEKISSTLELTARIAAFLQKIE-DERDLYDVVLFITGKVYPPWD--ERELGVGIGLLYEALENVSGVK 80 (558)
T ss_dssp CBHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTCSSCTTS--SCCCCCCHHHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC-chhhHHHHHHHHcCCCCcccc--cceeCcChHHHHHHHHHHHCcC
Confidence 8999999999999999999999999999999984 45 899999997 56665 4689999999999999999999
Q ss_pred cChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhccC--CCCCCCCHHHHHHHHHHHHhhhh---HHhHHHHHHHHHHhC
Q 006003 82 KDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQG--MISGGLTIKELNDLLDRLASSEN---RAEKISVLSTLIKKT 156 (665)
Q Consensus 82 ~~~~~~~~L~~wk~~~~~~~~gD~~~~~~~v~~~r~~--~~~~~lTi~eV~~~Ld~la~~~~---~~~k~~~l~~ll~~~ 156 (665)
...... .|+ ..||||.+|++++.++.. ..+++|||.+||+.|++||..++ +++|..+|..|+.+|
T Consensus 81 ~~~~~~----~~~------~~GDlg~~a~~~~~~~~~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~l~~~~ 150 (558)
T 3gde_A 81 RSEIES----MIR------EYGDLGLVAEQLIKKKKMTTLAFEELTVRKVRETFDEIASLTGEGSMKRKIMLLTGLYGLA 150 (558)
T ss_dssp HHHHHH----HHH------HHSCHHHHHHHHHHHHHHHSCCCCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHH----HHH------hcCCHHHHHHHHHhhccCCCCCCCCCcHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhC
Confidence 865442 243 479999999998876532 23578999999999999999876 477889999999999
Q ss_pred CHHHHHHHHHHHHhhhccCCcccccccc----cC--cC-HHHHHhhhCCHHHHHHHHhh-hhhccccCCccCCCcccccc
Q 006003 157 NAQEMKWIIMIILKDLKLGISEKSIFHE----FH--PD-AEDLFNVTCDLKLVCEKLKD-RNQRHKRQDIEVGKAVRPQL 228 (665)
Q Consensus 157 t~~E~k~l~RiilkdlriG~~e~til~~----~h--p~-a~~~~~~~~dL~~v~~~l~~-~~~~~~~~~i~~g~~~~PmL 228 (665)
++.|++||+|+|+++||||+++++|+.+ || |+ ++++|++++||+.||+.|.+ +..++....+++|.|++|||
T Consensus 151 ~~~E~~~l~rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~~~~~~~dl~~v~~~l~~~g~~~l~~~~~~~~~p~~PmL 230 (558)
T 3gde_A 151 TPLEARYLTRLILNEMRLGVGEGIMRDAIARAFRADPETVERAYMITNDLGRVAVVAKKEGEEGLRKMKIEIHIPVRMML 230 (558)
T ss_dssp CHHHHHHHHHHHTTCCCSSCCHHHHHHHHHHHTTCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTCCCCTTSCCCCCE
T ss_pred CHHHHHHHHHHHhccccccccHHHHHHHHHHHhCCCHHHHHHHhccCCchHHHHHHHhhcCcccccccCCCCCCCCCCee
Confidence 9999999999999999999999999876 45 43 57899999999999999875 44556678899999999999
Q ss_pred ccccCCHHHHHHHhcCCceEEEEeeceeEEEEEEeCCEEEEEecCCCCCCcchhhhHHHHHhhccccceeeeceEEEeeC
Q 006003 229 AMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDT 308 (665)
Q Consensus 229 A~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qih~~g~~v~~~SR~g~d~t~~~p~l~~~~~~~~~~~~~ILDGElv~~d~ 308 (665)
|++..++++.+.++ .+|++|+||||+|||+|++|++|++|||||+++|..||++.+.+...+. .++|||||||+|+
T Consensus 231 A~~~~~~~~~~~~~--~~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~d~t~~fPel~~~~~~~l~-~~~iLDGElv~~~- 306 (558)
T 3gde_A 231 AQVAESLESAVREM--RTAAVEWKFDGSRVQVHWDGSRVTIYSRRLENVTNALPDIVEEIKKSVK-PGVILDGEVIAVK- 306 (558)
T ss_dssp EEECSCHHHHHHHS--SSEEEEEECSSEEEEEEECSSCCEEEETTCCBCGGGCHHHHHHHHHHBC-SSEEEEEEEEEEE-
T ss_pred CCcCCChHHHhhhc--cceEEEEeEeeEEEEEEEeCCEEEEEcCCCCcccccchHHHHHHHhhCC-CCeEEEeEEEEcC-
Confidence 99998888888877 4799999999999999999999999999999999999999887754443 3599999999994
Q ss_pred CCCccccccchHHHHHHhhcCC---CCCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCCcceecccCCCCCc
Q 006003 309 SLNRFAEFGSNQEIAKAARDGL---SSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNS 385 (665)
Q Consensus 309 ~~~~~~~F~~lq~~~~~~~~~~---~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~ 385 (665)
.++++||+.+|...++.. .. ....+++|++|||||+|| ++++.||.+|+++|++++.+ ++++.+..
T Consensus 307 -~g~~~~F~~L~~r~~~~~-~~~~~~~~~pv~~~vFDlL~l~G-~l~~~pl~eRr~~L~~~~~~-~~~i~~~~------- 375 (558)
T 3gde_A 307 -EGKPMPFQHVLRRFRRKH-DVAKMVEKIPLEAHFFDILYHDG-ECIDLPLRERRKLLESAVNE-SEKIKLAK------- 375 (558)
T ss_dssp -TTEEECHHHHHHHHHC---CTHHHHHHSCEEEEEEEEEEESS-BCTTSBHHHHHHHHHHHBCC-CSSEEECC-------
T ss_pred -CCcCCCHHHHHHHhcccc-chhhHhhcCCeEEEEEEEEeeCC-CccCCCHHHHHHHHHHhcCC-CCeEEEee-------
Confidence 367789987776543211 10 013589999999999999 99999999999999999975 44443321
Q ss_pred cccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecCCCCCccCCCCCCeEEEccccccCCCcceEEEEEEEecCCC
Q 006003 386 HVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGR 465 (665)
Q Consensus 386 ~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~~s~Y~~GkRs~~WlKiK~~y~~~g~~~DlvVIG~~~G~g~ 465 (665)
...+.+.+++.++|++++++|+||||+|+++|+|+||+||.+|+|+||++ +++|+||||+++|+|+
T Consensus 376 ----------~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~----~t~D~vViG~~~g~Gk 441 (558)
T 3gde_A 376 ----------QIVTDSVDEVRKMYDEAISAGHEGVMIKLPSSPYIPGKRGKNWLKVKAIM----ETLDLVVVGGEWGEGK 441 (558)
T ss_dssp ----------EEEESCHHHHHHHHHHHHHTTCCEEEEECTTCBCCTTCEEEEEEEEESSC----CCEEEEEEEEEECCTT
T ss_pred ----------eEecCCHHHHHHHHHHHHHcCCceeEEecCCCCCCCCCcCCceEEEeccc----ceEEEEEEEEEeCCCC
Confidence 34567899999999999999999999999999999999999999999974 6899999999999999
Q ss_pred CCCccceEEEEEeeCCCCCCCCcceEEEEEeccCCCHHHHHHHHHhhccccccccCCCCCCCCceeecCCCCCCCcEEEe
Q 006003 466 RGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIE 545 (665)
Q Consensus 466 r~g~~~sfllg~~d~~~~~~~~~~~~~~~kVgsG~s~~~~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~pd~wi~ 545 (665)
++|.+|+|+||++|+++ ++|+++|+||||||++++++|.+.+++++... ..|++||+
T Consensus 442 r~g~~g~lllg~~d~~~-----g~l~~vgkvgsGftd~~~~~l~~~l~~~~~~~------------------~~~~vwv~ 498 (558)
T 3gde_A 442 RSHWLSSFELACLDPVT-----GKLLKVGRVATGFTEEDLEELTEMFRPLIVSQ------------------QGKKVEFI 498 (558)
T ss_dssp GGGSEEEEEEEEECTTT-----CCEEEEEEECSSCCHHHHHHHHHHHGGGEEEE------------------ETTEEEEC
T ss_pred ccCccceEEEEEeeCCC-----CEEEEEeeeCCCCCHHHHHHHHHHHHhhcccC------------------CCCcEEec
Confidence 99999999999998643 48999999999999999999999999887541 23689999
Q ss_pred CCCceEEEEEeeeceecccCccCCCeeeeccEEEEEecCCCccCCCCHHHHHHHHHccC
Q 006003 546 SPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSN 604 (665)
Q Consensus 546 ~P~~s~v~ev~a~~~~~~s~~~~~g~sLRfPr~~riR~DK~~~d~~t~~el~~l~~~~~ 604 (665)
|. +|+||+++.. ..|+.|++|++||||||+|+|+||+|+||+|++++.+||+.+.
T Consensus 499 -P~--lV~EV~~~~~-t~s~~~~~g~~LRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q~ 553 (558)
T 3gde_A 499 -PK--YVFEVAYQEI-QKSPKYESGYALRFPRFVRLRDDKDVDEADTIERVENLYKLQF 553 (558)
T ss_dssp -SC--CEEEEECSEE-EECSSSTTSEEEESCEEEEECTTCCGGGSCBHHHHHHHHHTTC
T ss_pred -Cc--EEEEEEEeee-ecCCccCCCCEEECcEEEEEECCCChHHCCCHHHHHHHHHHhH
Confidence 74 6999986543 3678899999999999999999999999999999999997553
No 4
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=100.00 E-value=3.4e-100 Score=863.78 Aligned_cols=532 Identities=25% Similarity=0.450 Sum_probs=462.6
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCchHhhhHhhc----CCCCCCCccccCCCHHHHHHHHHHHhCCCc
Q 006003 7 TEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLI----LPSLDRERGSYGLKESVLANCLIDALGMSK 82 (665)
Q Consensus 7 ~~F~~l~~~~e~i~~~~~~~~k~~~l~~~~~~~~~~~~~~~~lrLl----lp~~d~~r~~yglke~~L~k~~~~~~~~~~ 82 (665)
|+|..||++|++|++++++.+|+++|.+||.++ .+++++|+++|+ +|+.+ +++|||+++.|++++++++|+++
T Consensus 1 ~~f~~~a~~~~~l~~t~~r~~k~~~l~~~~~~~-~~~d~~~~~~ll~~~l~P~~~--~~~~gi~~~~L~~~~~~~~g~~~ 77 (561)
T 2cfm_A 1 MRYLELAQLYQKLEKTTMKLIKTRLVADFLKKV-PDDHLEFIPYLILGEVFPEWD--ERELGVGEKLLIKAVAMATGIDA 77 (561)
T ss_dssp CBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHS-CGGGTTTHHHHHTTCSSCTTC--CCCCCCCHHHHHHHHHHHHSCCH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-CchHHHHHHHHHhCCCCcccc--ccccCCCHHHHHHHHHHHHCcCH
Confidence 799999999999999999999999999999986 578899999997 67665 46899999999999999999998
Q ss_pred ChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhccCC--CCCCCCHHHHHHHHHHHHhhhh---HHhHHHHHHHHHHhCC
Q 006003 83 DSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGM--ISGGLTIKELNDLLDRLASSEN---RAEKISVLSTLIKKTN 157 (665)
Q Consensus 83 ~~~~~~~L~~wk~~~~~~~~gD~~~~~~~v~~~r~~~--~~~~lTi~eV~~~Ld~la~~~~---~~~k~~~l~~ll~~~t 157 (665)
+.... .| ...||||++|+.++++++.. .+++|||.+||+.|++||..++ +++|..+|..++.+||
T Consensus 78 ~~~~~----~~------~~~GDlg~~~~~~~~~~~~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~~ 147 (561)
T 2cfm_A 78 KEIEE----SV------KDTGDLGESIALAVKKKKQKSFFSQPLTIKRVYQTLVKVAETTGEGSQDKKVKYLADLFMDAE 147 (561)
T ss_dssp HHHHH----HH------HHHSCHHHHHHHHHHHHTTTCCCCCCCBHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHH----HH------HhcCCHHHHHHHHhccCcCcCcCCCCCcHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC
Confidence 65432 23 34799999999999887532 2378999999999999999877 4678899999999999
Q ss_pred HHHHHHHHHHHHhhhccCCcccccccc----c---CcCHHHHHhhhCCHHHHHHHHhhhh-hccccCCccCCCccccccc
Q 006003 158 AQEMKWIIMIILKDLKLGISEKSIFHE----F---HPDAEDLFNVTCDLKLVCEKLKDRN-QRHKRQDIEVGKAVRPQLA 229 (665)
Q Consensus 158 ~~E~k~l~RiilkdlriG~~e~til~~----~---hp~a~~~~~~~~dL~~v~~~l~~~~-~~~~~~~i~~g~~~~PmLA 229 (665)
+.|++||+|+|+++||||+++++|+.+ | |++++++|++++||+.||+.|.++. .++....+++|.|++||||
T Consensus 148 ~~e~~~l~rli~~~lriG~~~~~vl~ala~a~~~~~~~v~~~~~~~~~l~~v~~~l~~~g~~~l~~~~~~~~~P~~PmLA 227 (561)
T 2cfm_A 148 PLEAKYLARTILGTMRTGVAEGLLRDAIAMAFHVKVELVERAYMLTSDFGYVAKIAKLEGNEGLAKVQVQLGKPIKPMLA 227 (561)
T ss_dssp HHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCTTSCCCCCEE
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHHhcCCHHHHHHHHccCCCHHHHHHHHHhcccccccccCCCCCCCCCCeeC
Confidence 999999999999999999999999985 3 4678899999999999999988743 3455778999999999999
Q ss_pred cccCCHHHHHHHhcCCceEEEEeeceeEEEEEEeCCEEEEEecCCCCCCcchhhhHHHHHhhccccceeeeceEEEeeCC
Q 006003 230 MRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTS 309 (665)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qih~~g~~v~~~SR~g~d~t~~~p~l~~~~~~~~~~~~~ILDGElv~~d~~ 309 (665)
++..+++++++++.+ +|++|+||||+|||+|++++++++|||||+++|..+|++.+.+.+.+...++|||||||+|| .
T Consensus 228 ~~~~~~~~~~~~~~~-~~~~E~K~DG~R~~i~~~~g~v~l~SR~g~~~t~~fPel~~~~~~~l~~~~~iLDGElv~~d-~ 305 (561)
T 2cfm_A 228 QQAASIRDALLEMGG-EAEFEIKYDGARVQVHKDGSKIIVYSRRLENVTRAIPEIVEALKEAIIPEKAIVEGELVAIG-E 305 (561)
T ss_dssp EEESCHHHHHHHTTS-CEEEEEECCSEEEEEEEETTEEEEECTTCCBCGGGCHHHHHHHHHHBCSSEEEEEEEEEEBC-T
T ss_pred CcCCChhHHHhhcCC-cEEEEEeEceEEEEEEEECCEEEEEeCCCCCchhhhhhHHHHHHHhCCCcceEeeeEEEEEc-C
Confidence 999888888887754 79999999999999999999999999999999999999988775455557999999999999 5
Q ss_pred CCccccccchHHHHHHhhcCC---CCCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCCcceecccCCCCCcc
Q 006003 310 LNRFAEFGSNQEIAKAARDGL---SSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSH 386 (665)
Q Consensus 310 ~~~~~~F~~lq~~~~~~~~~~---~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~ 386 (665)
++++.||+.+|...++.. .. ....+++|++|||||+||+++++.||.+|+++|++++.+. +++.+.
T Consensus 306 ~g~~~~F~~L~~r~~~~~-~~~~~~~~~~~~~~vFDlL~l~g~~l~~~pl~eRr~~L~~~~~~~-~~i~~~--------- 374 (561)
T 2cfm_A 306 NGRPLPFQYVLRRFRRKH-NIEEMMEKIPLELNLFDVLYVDGQSLIDTKFIDRRRTLEEIIKQN-EKIKVA--------- 374 (561)
T ss_dssp TSSBCCTHHHHHHHHCCS-CHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-SSEEEC---------
T ss_pred CCcccCHHHHHHHhhccc-chhhhcccCceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhCcC-CcEEEe---------
Confidence 677889988877543211 00 0136899999999999999999999999999999999764 344321
Q ss_pred ccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecCCCCCccCCCCCCeEEEccccccCCCcceEEEEEEEecCCCC
Q 006003 387 VRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRR 466 (665)
Q Consensus 387 v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~~s~Y~~GkRs~~WlKiK~~y~~~g~~~DlvVIG~~~G~g~r 466 (665)
.+..+++.++++++|++++++|+||||+|+++|+|+||+|+.+|+|+|++| +++|++|||+++|+|++
T Consensus 375 --------~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~----dt~D~vViG~~~g~Gkr 442 (561)
T 2cfm_A 375 --------ENLITKKVEEAEAFYKRALEMGHEGLMAKRLDAVYEPGNRGKKWLKIKPTM----ENLDLVIIGAEWGEGRR 442 (561)
T ss_dssp --------CEEEESCHHHHHHHHHHHHHTTCCEEEEECTTCCCCTTCEEEEEEEECSSC----CCEEEEEEEEEECSGGG
T ss_pred --------eeEEcCCHHHHHHHHHHHHHcCCceeEEeCCCCCCCCCCcCCCeEEEcccC----cceeEEEEEEEeCCCCC
Confidence 134567899999999999999999999999999999999999999999998 68999999999999999
Q ss_pred CCccceEEEEEeeCCCCCCCCcceEEEEEeccCCCHHHHHHHHHhhccccccccCCCCCCCCceeecCCCCCCCcEEEeC
Q 006003 467 GGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIES 546 (665)
Q Consensus 467 ~g~~~sfllg~~d~~~~~~~~~~~~~~~kVgsG~s~~~~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~pd~wi~~ 546 (665)
+|.+|+|+||++++++ +.|+++|+||||||++++++|.+.+++++.. ...|++|++
T Consensus 443 ~g~~g~lllg~~d~~~-----~~~~~vgkvgsGftd~~~~~l~~~l~~~~~~------------------~~~~~~wv~- 498 (561)
T 2cfm_A 443 AHLFGSFILGAYDPET-----GEFLEVGKVGSGFTDDDLVEFTKMLKPLIIK------------------EEGKRVWLQ- 498 (561)
T ss_dssp TTSEEEEEEEEECTTT-----CCEEEEEEECSSCCHHHHHHHHHHHGGGEEE------------------EETTEEEEC-
T ss_pred CCccceEEEEEEeCCC-----CeEEEEeEeCCCCCHHHHHHHHHHHhhhccc------------------cCCCeEEeC-
Confidence 9999999999998653 3799999999999999999999999887643 135799999
Q ss_pred CCceEEEEEeeeceecccCccCCCeeeeccEEEEEecCCCccCCCCHHHHHHHHHcc
Q 006003 547 PEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 603 (665)
Q Consensus 547 P~~s~v~ev~a~~~~~~s~~~~~g~sLRfPr~~riR~DK~~~d~~t~~el~~l~~~~ 603 (665)
|. .|+||+++..+ .|+.|+.|++||||||.|+|+||+|+||+|++++.+|++.+
T Consensus 499 P~--~V~EV~~~~~t-~s~~~~~G~~lRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q 552 (561)
T 2cfm_A 499 PK--VVIEVTYQEIQ-KSPKYRSGFALRFPRFVALRDDKGPEDADTIERIAQLYELQ 552 (561)
T ss_dssp SC--CEEEEECSEEE-CCSSSTTSCEEESCEEEEECTTSCGGGSCBHHHHHHHHHHH
T ss_pred Cc--eEEEEEEEEEE-cCCccCCCCEEEccEEEEEeCCCChHHCCCHHHHHHHHHHh
Confidence 74 69999875433 57889999999999999999999999999999999999754
No 5
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=100.00 E-value=1.7e-100 Score=880.14 Aligned_cols=555 Identities=25% Similarity=0.433 Sum_probs=466.0
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHhhhc--CCCchHhhhHhhcCCCC--CCCccccCCCHHHHHHHHHHHhC
Q 006003 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTY--CDSVDYFSALRLILPSL--DRERGSYGLKESVLANCLIDALG 79 (665)
Q Consensus 4 ~~~~~F~~l~~~~e~i~~~~~~~~k~~~l~~~~~~~--~~~~~~~~~lrLllp~~--d~~r~~yglke~~L~k~~~~~~~ 79 (665)
..+|+|..||++|++|++|+++.+|+++|.+||.++ .+++++.++++|+++.+ ++++.+|||+++.|++++++++|
T Consensus 53 ~~~~~~~~la~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~P~~~~~elgi~~~~L~k~i~~~~g 132 (688)
T 1x9n_A 53 GQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATG 132 (688)
T ss_dssp TSCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCCCCCCCHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcCChHHHHHHHHHHcCCCCccccccccCcChHHHHHHHHHHHC
Confidence 357999999999999999999999999999999985 36789999999987664 45567999999999999999999
Q ss_pred CCcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhccC-CCCCCCCHHHHHHHHHHHHhhhh---HHhHHHHHHHHHHh
Q 006003 80 MSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQG-MISGGLTIKELNDLLDRLASSEN---RAEKISVLSTLIKK 155 (665)
Q Consensus 80 ~~~~~~~~~~L~~wk~~~~~~~~gD~~~~~~~v~~~r~~-~~~~~lTi~eV~~~Ld~la~~~~---~~~k~~~l~~ll~~ 155 (665)
++...... .| ...||||.+|+++++++.. ..+++|||.+||+.|++||..+| +..|..+|..||.+
T Consensus 133 ~~~~~~~~----~~------~~~GDlg~va~~~~~~~~~~~~~~~lTv~~V~~~L~~ia~~~g~~s~~~k~~~l~~ll~~ 202 (688)
T 1x9n_A 133 RQLESVRA----EA------AEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVA 202 (688)
T ss_dssp CCHHHHHH----HH------HHHTCHHHHTCC--------CCCSCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHH----HH------HhcCCHHHHHHHHHhcccccCCCCCCcHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHh
Confidence 99875542 23 3479999999988776533 24578999999999999999877 35678999999999
Q ss_pred CCHHHHHHHHHHHHhhhccCCccccccccc------CcC------------------------------HHHHHhhhCCH
Q 006003 156 TNAQEMKWIIMIILKDLKLGISEKSIFHEF------HPD------------------------------AEDLFNVTCDL 199 (665)
Q Consensus 156 ~t~~E~k~l~RiilkdlriG~~e~til~~~------hp~------------------------------a~~~~~~~~dL 199 (665)
|++.|++||+|+|+++||||+++++|+.++ ||. ..++|+.++|+
T Consensus 203 ~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~ 282 (688)
T 1x9n_A 203 CRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDL 282 (688)
T ss_dssp CCSTHHHHHHHHHTTCCCCSCCHHHHHHHHHHHHHHSCTTCCSSCSCSCTTTTSCHHHHHHHHHHHHHHHHHHHHHSCCH
T ss_pred CCHHHHHHHHHHHhcccccCccHHHHHHHHHHHhccCccccccchhhhhhhcccchhhHHHHHHHHHHHHHHHHhhCCCH
Confidence 999999999999999999999999999753 441 13578999999
Q ss_pred HHHHHHHhhh-hhcc-ccCCccCCCccccccccccCCHHHHHHHhcCCceEEEEeeceeEEEEEEe-CCEEEEEecCCCC
Q 006003 200 KLVCEKLKDR-NQRH-KRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKN-GSEIHYFSRSFLD 276 (665)
Q Consensus 200 ~~v~~~l~~~-~~~~-~~~~i~~g~~~~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qih~~-g~~v~~~SR~g~d 276 (665)
+.||..|.+. ...+ ....+++|.|++||||++..+++++++++.+.+|++|+||||+|||+|++ ++++++|||||++
T Consensus 283 ~~l~~~l~~~g~~~l~~~~~~~~g~pv~PMLA~~~~~~~~~l~~~~~~~~~~E~K~DG~R~qih~~~~g~v~l~SR~g~d 362 (688)
T 1x9n_A 283 DRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQED 362 (688)
T ss_dssp HHHHHHHHHHHHHHTGGGCCCCTTSCCCCCEEEEESSHHHHHHHTTTSCEEEEEEESSEEEEEEECTTSCEEEECTTSCB
T ss_pred HHHHHHHHhcchhhcccccCcCCCCCccCccCCccCCHHHHHhhcCCCeEEEEEccccEeEEEEEcCCCeEEEEeCCCCc
Confidence 9999987643 2233 35679999999999999999888899999888999999999999999995 5689999999999
Q ss_pred CCcchhhhHHHHHhhc--cccceeeeceEEEeeCCCCccccccchHHHHHHhhcCCC---CCCceEEEEEEEEeeCCccc
Q 006003 277 HSEYGHAMSKIIEQNV--LVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLS---SDRQLCYFAFDVLYVGDTSV 351 (665)
Q Consensus 277 ~t~~~p~l~~~~~~~~--~~~~~ILDGElv~~d~~~~~~~~F~~lq~~~~~~~~~~~---~~~~~~~~vFDiL~lng~~l 351 (665)
+|..||++.+.+...+ ..+++|||||||+||+.++++.||+.+|.. .+.+.. ...+++|++|||||+||+++
T Consensus 363 ~t~~fPel~~~l~~~~~~~~~~~ILDGElV~~d~~~g~~~~F~~L~~r---~r~~~~~~~~~~~v~~~vFDlL~l~G~~l 439 (688)
T 1x9n_A 363 NTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTR---KRKEVDASEIQVQVCLYAFDLIYLNGESL 439 (688)
T ss_dssp CTTTCHHHHHTSGGGBCTTCCCEEEEEEEEEECTTTCSBCCHHHHTTS---CSSCCCGGGCCSEEEEEEEEEEEETTEEC
T ss_pred ccccchHHHHHHHHhhccCCCCeEEeEEEEEEeCCCCCcCCHHHHHHH---hhcccchhhcccceEEEEEechhhcCCcc
Confidence 9999999887654322 246899999999999877888999766542 222221 23689999999999999999
Q ss_pred cCCCHHHHHHHHHhhcCCCCCcceecccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecC--CCCC
Q 006003 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL--GSKW 429 (665)
Q Consensus 352 ~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~--~s~Y 429 (665)
++.||.+||++|++++.+.++++.+.. +..+.+.+++.++|++++++|+||||+|++ +|+|
T Consensus 440 ~~~Pl~eRr~~L~~~~~~~~~~i~~~~-----------------~~~~~~~~~~~~~~~~a~~~g~EGlV~K~~~~ds~Y 502 (688)
T 1x9n_A 440 VREPLSRRRQLLRENFVETEGEFVFAT-----------------SLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATY 502 (688)
T ss_dssp TTSCHHHHHHHHHHHBCCBTTTEEECC-----------------EECCCCHHHHHHHHHHHHHTSEEEEEEEESSSSCSS
T ss_pred ccCCHHHHHHHHHHhhccCCCcEEEEe-----------------eEecCCHHHHHHHHHHHHhcCCceeEEeecccCCCC
Confidence 999999999999999987666554321 334578899999999999999999999999 9999
Q ss_pred ccCCCCCCeEEEccccccC-CCcceEEEEEEEecCCCCCCccceEEEEEeeCCCCCCCCcceEEEEEeccCCCHHHHHHH
Q 006003 430 EPGDRSGKWLKLKPEYIRA-GSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAV 508 (665)
Q Consensus 430 ~~GkRs~~WlKiK~~y~~~-g~~~DlvVIG~~~G~g~r~g~~~sfllg~~d~~~~~~~~~~~~~~~kVgsG~s~~~~~~l 508 (665)
+||+|+.+|+|+|++|+++ ++++|+||||||+|+|+|+|.+|+|+||++++++ +.|+++|+||||||++++++|
T Consensus 503 ~~GkRs~~WlK~K~~y~~~~~dt~D~vVIG~~~g~Gkr~g~~gslllg~~d~~~-----~~l~~vgkvgtGftd~~~~~l 577 (688)
T 1x9n_A 503 EIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDS-----EELQAICKLGTGFSDEELEEH 577 (688)
T ss_dssp CTTTCSEEEEEEEHHHHHSSCEEEEEEEEEEEEBCTTSBTSEEEEEEEEEETTT-----TEEEEEEEECCSCCHHHHHHH
T ss_pred CCCCcCchHheeehhhhccccccccEEEEEEEeCCCCCCCceeeEEEEEEeCCC-----CeEEEEeeeCCCCCHHHHHHH
Confidence 9999999999999999884 7899999999999999999999999999998753 379999999999999999999
Q ss_pred HHhhccccccccCCCCCCCCceeecCCCCCCCcEEEeCCCceEEEEEeeeceecccCccCC---------CeeeeccEEE
Q 006003 509 VTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSA---------PYSLRFPRID 579 (665)
Q Consensus 509 ~~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~pd~wi~~P~~s~v~ev~a~~~~~~s~~~~~---------g~sLRfPr~~ 579 (665)
.+.+++++.. .|+.++... ...+|++||+ |. .|+||++...+ .|+.|++ |++||||||+
T Consensus 578 ~~~l~~~~~~------~~~~~~~~~--~~~~p~vwv~-P~--~V~EV~~~e~t-~S~~~~~~~g~~~~~~G~sLRfPrf~ 645 (688)
T 1x9n_A 578 HQSLKALVLP------SPRPYVRID--GAVIPDHWLD-PS--AVWEVKCADLS-LSPIYPAARGLVDSDKGISLRFPRFI 645 (688)
T ss_dssp HHHHHHTEES------SCCTTEECS--SSCCCSEEEC-SC--CEEEEEESEEE-EESSCCTTTTTSCSSCEEEEESCEEE
T ss_pred HHHhhccccC------CCCCccccC--CCCCCcEEeC-Cc--EEEEEEEEeee-ccccccccccccccCCCceEECcEEE
Confidence 9999998754 233455443 3568999999 64 59999864332 4666764 8999999999
Q ss_pred EEecCCCccCCCCHHHHHHHHHccCC
Q 006003 580 RVRYDKPWHDCLDVQSFVELVHSSNG 605 (665)
Q Consensus 580 riR~DK~~~d~~t~~el~~l~~~~~~ 605 (665)
|+|+||+|+||+|++++.+|++++..
T Consensus 646 riR~DK~~~ea~t~~~l~~l~~~q~~ 671 (688)
T 1x9n_A 646 RVREDKQPEQATTSAQVACLYRKQSQ 671 (688)
T ss_dssp EECTTCCGGGSCBHHHHHHHHHHHC-
T ss_pred EEeCCCChHHCCCHHHHHHHHHHhHh
Confidence 99999999999999999999987654
No 6
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=5e-64 Score=529.72 Aligned_cols=307 Identities=23% Similarity=0.349 Sum_probs=244.4
Q ss_pred ccCCCccccccccccCCHHHHHHHhcCCceEEEEeeceeEEEEEEeCCEEEEEecCCCCCCcchhhhHHHHHhhccccce
Q 006003 218 IEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRC 297 (665)
Q Consensus 218 i~~g~~~~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qih~~g~~v~~~SR~g~d~t~~~p~l~~~~~~~~~~~~~ 297 (665)
.++|.|++||||+.... +. +.+.+|++|+||||+|||+|++++++++|||||+++|..+|++.+.+ +.+...++
T Consensus 3 ~~~~~p~~PmLA~~~~~-~~----~~~~~~~~E~K~DG~R~~~~~~~g~v~l~SR~g~~~t~~fPel~~~~-~~l~~~~~ 76 (310)
T 1vs0_A 3 VFEFDNLAPMLATHGTV-AG----LKASQWAFEGXWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALA-EDLADHHV 76 (310)
T ss_dssp -CCGGGCCCCEEEECCC-TT----CCTTTEEEEEECCSEEEEEEEETTEEEEEETTCCBCGGGCGGGHHHH-HHTTTCEE
T ss_pred CCCCCCccCeECCCcCC-Cc----cCCCCEEEEEccCcEEEEEEEECCEEEEEcCCCCCchhhchhHHHHH-HhCCCccE
Confidence 56889999999999852 21 24568999999999999999999999999999999999999988754 34545689
Q ss_pred eeeceEEEeeCCCCccccccchHHHHHHhhcCCCCCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCCcceec
Q 006003 298 ILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETL 377 (665)
Q Consensus 298 ILDGElv~~d~~~~~~~~F~~lq~~~~~~~~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~ 377 (665)
|||||||+||+. ++ .+|+.+|. +.+ ..+++|++||||++||++++++||.+|+++|++++.+. ++.+.
T Consensus 77 iLDGElv~~d~~-g~-~~F~~l~~---r~~-----~~~~~~~vFDll~~~g~~l~~~pl~eRr~~L~~~~~~~--~i~~~ 144 (310)
T 1vs0_A 77 VLDGEAVVLDSS-GV-PSFSQMQN---RGR-----DTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT--SLTVP 144 (310)
T ss_dssp EEEEEEECBCTT-SC-BCHHHHHT---CCT-----TSCCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHHHS--CCCCC
T ss_pred EEeeEEEEECCC-CC-cCHHHHHh---hcc-----CCcEEEEEEEeEEECCcCcccCCHHHHHHHHHHhccCC--cEEEC
Confidence 999999999874 33 48866653 221 12699999999999999999999999999999998643 22211
Q ss_pred ccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecCCCCCccCCCCCCeEEEccccccCCCcceEEEE
Q 006003 378 VPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLII 457 (665)
Q Consensus 378 ~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~~s~Y~~GkRs~~WlKiK~~y~~~g~~~DlvVI 457 (665)
+ .. ..++.++|++++++|.||||+|+++|+|++|+|+.+|+|+|++| ++|++|+
T Consensus 145 -----------~------~~----~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~-----~~D~vv~ 198 (310)
T 1vs0_A 145 -----------E------LL----PGDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWN-----TQEVVIG 198 (310)
T ss_dssp -----------C------CC----CSSHHHHHHHHHHTTCCEEEEEETTCCCCTTCEEEEEEEEESSE-----EEEEEEE
T ss_pred -----------c------cC----chHHHHHHHHHHHcCCceEEEeCCCCCcCCCCcChHHhccchhe-----EEEEEEE
Confidence 0 11 12488999999999999999999999999999999999999997 8999999
Q ss_pred EEEecCCCCCCccceEEEEEeeCCCCCCCCcceEEEEEeccCCCHHHHHHHHHhhccccccccCCCCCCCCceeecCCCC
Q 006003 458 GGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSK 537 (665)
Q Consensus 458 G~~~G~g~r~g~~~sfllg~~d~~~~~~~~~~~~~~~kVgsG~s~~~~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~ 537 (665)
|+++|+|+++|.+|+|+||++|++ .++++|+||||||++++++|.+.+++++.. .|| |....+...
T Consensus 199 G~~~g~G~r~g~~g~lllg~~d~~-------g~~~vgkvgtGftd~~~~~l~~~l~~~~~~------~~p-~~~~~~~~~ 264 (310)
T 1vs0_A 199 GWRAGEGGRSSGVGSLLMGIPGPG-------GLQFAGRVGTGLSERELANLKEMLAPLHTD------ESP-FDVPLPARD 264 (310)
T ss_dssp EEEC--------CCEEEEEEEETT-------EEEEEEEECSSCCHHHHHHHHHHHGGGBCS------SCS-BSSCCCHHH
T ss_pred EEEcCCCCccCccceEEEEEEcCC-------CCEEEEEECCCCCHHHHHHHHHHHHhhccC------CCC-ccccCCccc
Confidence 999999999999999999999753 389999999999999999999999998753 122 321111124
Q ss_pred CCCcEEEeCCCceEEEEEeeeceecccCccCCCeeeeccEEEEEecCCCccCCCC
Q 006003 538 ERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLD 592 (665)
Q Consensus 538 ~~pd~wi~~P~~s~v~ev~a~~~~~~s~~~~~g~sLRfPr~~riR~DK~~~d~~t 592 (665)
.+|++|++ |+ +|+||+++ .++.+++||||||+++|+||+|+||+.
T Consensus 265 ~~~~~wv~-P~--~V~ev~~~-------~~t~~g~lRfP~f~r~R~DK~~~~~~~ 309 (310)
T 1vs0_A 265 AKGITYVK-PA--LVAEVRYS-------EWTPEGRLRQSSWRGLRPDKKPSEVVR 309 (310)
T ss_dssp HTTEEEBC-TT--CEEEEEES-------CBCTTSCBTTCEEEEECTTSCGGGCCC
T ss_pred CCCCEEEc-CC--EEEEEEEE-------EEcCCCeEEceEEEEEeCCCCHHHhCC
Confidence 57899999 76 58899763 345678999999999999999999974
No 7
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1
Probab=100.00 E-value=2.8e-54 Score=463.19 Aligned_cols=304 Identities=19% Similarity=0.229 Sum_probs=237.4
Q ss_pred CCccCCCccccccccccCCHHHHHHHhcCCceEEEEeeceeEEEEEEe-CCEEEEEecCCCCCCc------chhhhHHHH
Q 006003 216 QDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKN-GSEIHYFSRSFLDHSE------YGHAMSKII 288 (665)
Q Consensus 216 ~~i~~g~~~~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qih~~-g~~v~~~SR~g~d~t~------~~p~l~~~~ 288 (665)
..+++|.|++|||+. +.+++... ..|++|+||||+|||+|++ ++++++|||||++++. ++|++.+.+
T Consensus 3 ~~~~~~~pv~pmL~~----~~~~l~~~--~~~~~E~K~DG~R~~~~~~~~g~v~l~SR~g~~~~~l~~~~~~~p~~~~~l 76 (348)
T 1a0i_A 3 IKTNPFKAVSFVESA----IKKALDNA--GYLIAEIKYDGVRGNICVDNTANSYWLSRVSKTIPALEHLNGFDVRWKRLL 76 (348)
T ss_dssp TCCCCEEEEECCHHH----HHHHHHHH--SSEEEEECCCSEEEEEEEETTSEEEEECTTSCBCGGGGGGCEECHHHHHHH
T ss_pred eeccCCCcCchhhhc----HHHHHhhc--CcEEEEEeeceeEEEEEEeCCCeEEEEcCCCCCCcchhhhhcccchHHHHH
Confidence 468899999999932 34555544 4799999999999999998 6899999999999876 788888776
Q ss_pred Hhh--ccccceeeeceEEEeeCCCCccccccchHHHHHHh------------------hcC-----CCCCCceEEEEEEE
Q 006003 289 EQN--VLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAA------------------RDG-----LSSDRQLCYFAFDV 343 (665)
Q Consensus 289 ~~~--~~~~~~ILDGElv~~d~~~~~~~~F~~lq~~~~~~------------------~~~-----~~~~~~~~~~vFDi 343 (665)
... ..+.++|||||||+|+ .||+.+|...++. ... .....+++|++|||
T Consensus 77 ~~~~~~~~~~~iLDGElv~~~------~~F~~l~~~~~~k~~~~k~v~~~~~~~r~~~~~~~~i~~~~~~~~~~~~vFDl 150 (348)
T 1a0i_A 77 NDDRCFYKDGFMLDGELMVKG------VDFNTGSGLLRTKWTDTKNQEFHEELFVEPIRKKDKVPFKLHTGHLHIKLYAI 150 (348)
T ss_dssp HSTTCCCTTEEEEEEEEEESS------SCTTTHHHHHHCCSCCSSBSSCC--------CCCSCCCCCBCTTTEEEEEEEE
T ss_pred hhhhccCCCCEEEEEEEEEeC------CCHHHHHHHhcccccccccccccccccccccccccccccccccCcEEEEEEee
Confidence 532 3456999999999974 4899888775521 100 01246899999999
Q ss_pred EeeC----Cccc---cCCCHHHHHHHHHhhcCCCC-CcceecccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHc
Q 006003 344 LYVG----DTSV---IHQSLKERHELLQKVVKPSK-GRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN 415 (665)
Q Consensus 344 L~ln----g~~l---~~~pl~eRr~~L~~~~~~~~-~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~ 415 (665)
|++| |+++ +++||.+|+++|++++...+ .++.+. ....+++.+++.++|++++++
T Consensus 151 l~l~~~~~G~~l~~~~~~pl~eRr~~L~~l~~~~~~~~i~~~-----------------~~~~~~~~~~~~~~~~~~~~~ 213 (348)
T 1a0i_A 151 LPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEYFPEIEWQAA-----------------ESYEVYDMVELQQLYEQKRAE 213 (348)
T ss_dssp EEHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCTTSEEEEC-----------------CEEEESSHHHHHHHHHHHHTT
T ss_pred EeeCCCCCCccchhhccCCHHHHHHHHHHHhhhCCCCeEEEe-----------------ccEecCCHHHHHHHHHHHHHc
Confidence 9999 9998 89999999999999986543 222221 134567889999999999999
Q ss_pred CCceEEeecCCCCCccCCCCCCeEEEccccccCCCcceEEEEEEEecCCCC--CCccceEEEEEeeCCCCCCCCcceEEE
Q 006003 416 RDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRR--GGEVAQFLVALAERPAPDTYPRRFISF 493 (665)
Q Consensus 416 g~EGlV~K~~~s~Y~~GkRs~~WlKiK~~y~~~g~~~DlvVIG~~~G~g~r--~g~~~sfllg~~d~~~~~~~~~~~~~~ 493 (665)
|+||||+|+++|+|++|+|+. |+|+|++| ++|++|||+++|+|++ +|.+|+|+|+ + .+ ++|.
T Consensus 214 g~EGlv~K~~ds~Y~~Grr~~-wlK~K~~~-----~~D~vViG~~~g~g~r~~~g~~~~~~~~-~-~~------g~~~-- 277 (348)
T 1a0i_A 214 GHEGLIVKDPMCIYKRGKKSG-WWKMKPEN-----EADGIIQGLVWGTKGLANEGKVIGFEVL-L-ES------GRLV-- 277 (348)
T ss_dssp TCCCEEEECTTCEECSEEEEE-EEEESCCE-----EEEEEEEEEECCCTTTSSCSSCCEEEEE-C-TT------SCEE--
T ss_pred CCceEEEeCCCCCCCCCCccC-cEEEeecc-----cEEEEEEEEEeCCCCccCCceEEEEEEE-e-CC------CCEE--
Confidence 999999999999999998875 99999998 8999999999999986 7899999985 2 22 2554
Q ss_pred EEeccCCCHHHHHHHHHhhccccccccCCCCCCCCceeecCCCCCCCcEEEeCCCceEEEEEeeeceecccCccCCCeee
Q 006003 494 CRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSL 573 (665)
Q Consensus 494 ~kVgsG~s~~~~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~pd~wi~~P~~s~v~ev~a~~~~~~s~~~~~g~sL 573 (665)
+|||||++++++|.+.+++++.. ...+| +. . ....+|++|++ |..+.|+||+++. ++.+++|
T Consensus 278 --~gtGftd~~~~~l~~~l~~~~~~----~~~~~-~~-~--~~~~~~~~wv~-P~~g~v~eV~~~~-------~t~~G~l 339 (348)
T 1a0i_A 278 --NATNISRALMDEFTETVKEATLS----QWGFF-SP-Y--GIGDNDACTIN-PYDGWACQISYME-------ETPDGSL 339 (348)
T ss_dssp --EEBCCCSHHHHHHHHHHHHHHTT----TSCCC------------CCCCCC-TTTTCEEEEEESE-------ECTTSCE
T ss_pred --EccCCCHHHHHHHHHHHhhhccc----cCCCc-cc-c--cCCCCCcEEEc-CCCcEEEEEEeee-------ecCCCce
Confidence 36999999999999999988743 11223 21 1 12467899998 8888999998643 2333499
Q ss_pred eccEEEEEe
Q 006003 574 RFPRIDRVR 582 (665)
Q Consensus 574 RfPr~~riR 582 (665)
|||||+++|
T Consensus 340 RfP~f~~~R 348 (348)
T 1a0i_A 340 RHPSFVMFR 348 (348)
T ss_dssp ESCEEEEEC
T ss_pred ECCeEeEeC
Confidence 999999998
No 8
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=100.00 E-value=6.8e-49 Score=411.58 Aligned_cols=265 Identities=17% Similarity=0.231 Sum_probs=199.8
Q ss_pred ccccccccccCCHHHHHHHhcCCceEEEEeeceeEEEEEEeCCEEEEEecCCCCCCcchhhhHHHHHhhccccceeeece
Q 006003 223 AVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGE 302 (665)
Q Consensus 223 ~~~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qih~~g~~v~~~SR~g~d~t~~~p~l~~~~~~~~~~~~~ILDGE 302 (665)
+|+||||++.....+ .+.+|++|+||||+|||+ + + ++|||||+++|. |++.+.+... . ++|||||
T Consensus 2 ~~~PmLA~~~~~~~~-----~~~~~~~E~K~DG~R~~~--~-g--~l~SR~g~~~t~--p~l~~~~~~~--~-~~iLDGE 66 (297)
T 1fvi_A 2 ITKPLLAATLENIED-----VQFPCLATPKIAGIRSVK--Q-T--QMLSRTFKPIRN--SVMNRLLTEL--L-PEGSDGE 66 (297)
T ss_dssp CSSCCBCEECCCGGG-----CCSSEEEEECCCSEEEEE--S-S--SEECTTSCBCSC--HHHHHHHHHH--S-CTTEEEE
T ss_pred CcCceeCCccCcCcC-----CCCcEEEEeeEeeeeEEe--c-C--EEECCCCcccCc--HHHHHHHHhc--C-CeeEEEE
Confidence 689999999876521 146899999999999998 4 3 999999999996 8887766443 2 8999999
Q ss_pred EEEeeCCCCccccccchHHHHHHhhcCCCCCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCC-----cceec
Q 006003 303 MLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKG-----RLETL 377 (665)
Q Consensus 303 lv~~d~~~~~~~~F~~lq~~~~~~~~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~-----~~~~~ 377 (665)
+|++. .+|+.+|.+.+... .....+++|+||||||+| ++.||.+|+++|++++.+.+. ++.++
T Consensus 67 lv~~~------~~F~~l~~~~~~~~--~~~~~~~~~~vFDll~l~----~~~pl~eRr~~L~~~~~~~~~~~~~~~i~~~ 134 (297)
T 1fvi_A 67 ISIEG------ATFQDTTSAVMTGH--KMYNAKFSYYWFDYVTDD----PLKKYIDRVEDMKNYITVHPHILEHAQVKII 134 (297)
T ss_dssp EECTT------SCHHHHHHHHHSCC------CCEEEEEEEECSSC----TTSCHHHHHHHHHHHHHHCGGGGGCSSEEEE
T ss_pred EEECC------CCHHHHHHHhccCC--CCCccceEEEEEeccCCC----CCCCHHHHHHHHHHHHhhcCCccccceEEEc
Confidence 99932 35876666543221 113468999999999998 789999999999999865432 23221
Q ss_pred ccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecCCCCCccCCCCC----CeEEEccccccCCCcce
Q 006003 378 VPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSG----KWLKLKPEYIRAGSDLD 453 (665)
Q Consensus 378 ~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~~s~Y~~GkRs~----~WlKiK~~y~~~g~~~D 453 (665)
. ..+..+.+.+++.++|++++++|.||||+|+++|+|++| |+. +|+|+|+++ ++|
T Consensus 135 ~---------------~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G-Rs~~~~g~wlK~K~~~-----~~d 193 (297)
T 1fvi_A 135 P---------------LIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFG-RSTLKEGILLKMKQFK-----DAE 193 (297)
T ss_dssp E---------------CCCEEECSHHHHHHHHHHHHHTTCCSEEEECTTCCCCSS-BCCTTTTSSEEECCCE-----EEE
T ss_pred C---------------cceEecCCHHHHHHHHHHHHHCCCcEEEEECCCCCcCCC-CCCCCCCCeEEECCCC-----CEE
Confidence 0 002345688999999999999999999999999999999 988 999999986 899
Q ss_pred EEEEEEEec---------------------CCCC-CCccceEEEEEeeCCCCCCCCcceEEEEEeccCCCHHHHHHHHHh
Q 006003 454 VLIIGGYYG---------------------SGRR-GGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTK 511 (665)
Q Consensus 454 lvVIG~~~G---------------------~g~r-~g~~~sfllg~~d~~~~~~~~~~~~~~~kVgsG~s~~~~~~l~~~ 511 (665)
++|||+++| +|++ .|.+|+|+|+.. + ++|+||||||++++++|.+.
T Consensus 194 ~vVig~~~g~~~~~~~~~~~~g~~~r~~~~~G~~~~g~~g~ll~~~~---g---------~~~~vgtGftd~~~~~l~~~ 261 (297)
T 1fvi_A 194 ATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYD---G---------VVFSIGTGFDADQRRDFWQN 261 (297)
T ss_dssp EEEEEEEESCC-------------------CCCTTCCCEEEEEECST---T---------CCEEECSSCCHHHHHHHHHT
T ss_pred EEEEEEEeCccccccccccccccccccccCCCcccCCcEEEEEEccC---C---------eEEEECCCCCHHHHHHHHhh
Confidence 999999999 9998 889999999852 2 26799999999999998764
Q ss_pred hccccccccCCCCCCCCceeecCCCCCCCcEEEeCCCceEEEEEeeeceecccCccCCCeeeeccEEEEEecCCCc
Q 006003 512 LKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPW 587 (665)
Q Consensus 512 l~~~~~~~~~~~~~pp~~~~~~~~~~~~pd~wi~~P~~s~v~ev~a~~~~~~s~~~~~g~sLRfPr~~riR~DK~~ 587 (665)
+.| + ...|+||++.. ++..++||||||.|+|+||+|
T Consensus 262 ~~p--------------~-------------------~g~v~ev~~~~-------~t~~g~lRfP~f~r~R~Dk~~ 297 (297)
T 1fvi_A 262 KES--------------Y-------------------IGKMVKFKYFE-------MGSKDCPRFPVFIGIRHEEDR 297 (297)
T ss_dssp HHH--------------H-------------------TTCEEEEEEEC-------C-----CEEEEEEEEC-----
T ss_pred cCc--------------c-------------------cCcEEEEEEEE-------eCCCCCccCCeEEEEEcCCCC
Confidence 321 1 01266776532 233358999999999999986
No 9
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=100.00 E-value=9.1e-46 Score=375.27 Aligned_cols=215 Identities=41% Similarity=0.647 Sum_probs=192.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcC------------CCchHhhhHhhcCCCCCCCccccCCCHH
Q 006003 1 MTKTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYC------------DSVDYFSALRLILPSLDRERGSYGLKES 68 (665)
Q Consensus 1 ~~~~~~~~F~~l~~~~e~i~~~~~~~~k~~~l~~~~~~~~------------~~~~~~~~lrLllp~~d~~r~~yglke~ 68 (665)
|+++++|||++||++|++|++++++.+|+++|.+||.+|+ .++++||++||++|+.|++|++|||||+
T Consensus 8 ~~~~~~~~F~~l~~~~e~Ie~ts~rl~k~~il~~f~~~~~~~~~~l~~~~~~~~~dly~~l~ll~P~~d~~r~~ygi~e~ 87 (240)
T 4htp_A 8 QTVASHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKET 87 (240)
T ss_dssp CCGGGTSBHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCSHHHHHHHSGGGCCSSCCCCCCHH
T ss_pred cccccCCcHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccccccCcccCcchHHHHHHHhCccccccccccCCCHH
Confidence 6889999999999999999999999999999999999983 2679999999999999998889999999
Q ss_pred HHHHHHHHHhCCCcChHHHHHHhhhhcCCC-CCCCCCHHHHHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhhh---HHh
Q 006003 69 VLANCLIDALGMSKDSADAVRLINWRKGGA-APNAGNFPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSEN---RAE 144 (665)
Q Consensus 69 ~L~k~~~~~~~~~~~~~~~~~L~~wk~~~~-~~~~gD~~~~~~~v~~~r~~~~~~~lTi~eV~~~Ld~la~~~~---~~~ 144 (665)
.|+|+|++++|+++++.++.+|.|||+|+. ....||||.+|++++++|+... ++|||.+||+.|++||..+| ++.
T Consensus 88 ~L~Kai~~~~g~~~~~~~~~~L~~wk~~~~~~~~~GDlg~va~~~~~~r~~~~-~~LTv~~V~~~L~~IA~~~g~~s~~~ 166 (240)
T 4htp_A 88 MLAKLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPRCLQK-GSLTIQQVNDLLDSIASNNSAKRKDL 166 (240)
T ss_dssp HHHHHHHHHTTCCTTSHHHHHHHTC----------CCHHHHHHHHHTTSSCCS-CCCBHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCCCcchHHHHHHHhccccccccccCCCHHHHHHHHHHccCCCC-CCcCHHHHHHHHHHHHHhhCcccHHH
Confidence 999999999999999999999999998854 4678999999999998887653 78999999999999999876 445
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccCCcccccccccCcCHHHHHhhhCCHHHHHHHHhhhhhccccC
Q 006003 145 KISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQ 216 (665)
Q Consensus 145 k~~~l~~ll~~~t~~E~k~l~RiilkdlriG~~e~til~~~hp~a~~~~~~~~dL~~v~~~l~~~~~~~~~~ 216 (665)
|..+|..||.+||+.|+|||+|+|+|+||+|+++++|+.+|||+++++|++++||+.||+.|++|..+++..
T Consensus 167 k~~~l~~Ll~~~t~~E~k~liRiil~~lriG~~e~~vl~a~h~~~~~a~~~~~dL~~V~~~l~~~~~~L~~~ 238 (240)
T 4htp_A 167 IKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSDI 238 (240)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHTCCCCSSCHHHHHHHHCTTHHHHHHHHCCHHHHHHHTCSTTSCTTC-
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHhcccccCccHhHHHHHhChhHHHHHHhhCCHHHHHHHHhCchhhHhhc
Confidence 678999999999999999999999999999999999999999999999999999999999999988877653
No 10
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=100.00 E-value=8.8e-36 Score=324.01 Aligned_cols=314 Identities=16% Similarity=0.180 Sum_probs=212.1
Q ss_pred hhhCCHHHHHHHHhhhhhccccCCccCCCccccccccccCCHHHHH-HHhcCCceEEEEeeceeEEEEEE-----eCCEE
Q 006003 194 NVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAW-RKLHGKEVVIECKFDGDRIQIHK-----NGSEI 267 (665)
Q Consensus 194 ~~~~dL~~v~~~l~~~~~~~~~~~i~~g~~~~PmLA~~~~~~~~~~-~~~~~~~~~~E~K~DG~R~qih~-----~g~~v 267 (665)
....+|+.+|..|.... . ..-|| .+|+... .+.+ ..+...+|++|+||||+|+|+|+ +|+.+
T Consensus 20 ~~~~~l~~~v~~l~~~~----~-~~FPg--~~Pvsl~-----~~~l~~~l~~~~~~ve~K~DG~R~ll~~~~~~~~g~~v 87 (395)
T 1p16_A 20 EETKELRLMVAELLGRR----N-TGFPG--SQPVSFE-----RRHLEETLMQKDYFVCEKTDGLRCLLFLINDPDKGEGV 87 (395)
T ss_dssp HHHHHHHHHHHHHHTCS----C-CSCCC--EEEEECC-----HHHHHTHHHHSCEEEEEEECSEEEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHHHHCCC----C-CCCCC--Cceeccc-----HHHHHHhhCcCCEEEEECccceEEEEEEeecccCCCEE
Confidence 34557888888876421 1 11122 2343211 1223 34555689999999999999999 56789
Q ss_pred EEEecCCCCCC---cchhhhHHHHHh-hccccceeeeceEEEeeCCCCccccccchHHHHHHhhcCCCCCCceEEEEEEE
Q 006003 268 HYFSRSFLDHS---EYGHAMSKIIEQ-NVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDV 343 (665)
Q Consensus 268 ~~~SR~g~d~t---~~~p~l~~~~~~-~~~~~~~ILDGElv~~d~~~~~~~~F~~lq~~~~~~~~~~~~~~~~~~~vFDi 343 (665)
.++||+|++++ .+||++.+.... .....++|||||||+++... ...+++|++|||
T Consensus 88 ~L~sR~~~~~~i~~~~FP~~~~~~~~~~~~~~~~vLDGElV~~~~~~---------------------~~~~~~f~~FDl 146 (395)
T 1p16_A 88 FLVTRENDYYFIPNIHFPLSVNETREKPTYHHGTLLDGELVLENRNV---------------------SEPVLRYVIFDA 146 (395)
T ss_dssp EEEETTCCEEECCSCCCCSCTTCCSSSCCCCSSEEEEEEEEEECCSS---------------------SCCEEEEEEEEE
T ss_pred EEEeCCCceEEeccccCCcccccccchhccCCcceeeeEEEEeccCC---------------------CcceeEEEEEEE
Confidence 99999999964 478987653210 12357899999999976320 136789999999
Q ss_pred EeeCCccccCCCHHHHHHHHHhhc-CCCCCccee---cccCCCCCccccCCCCCccccccCCHHHHHHHHHH--HHHcCC
Q 006003 344 LYVGDTSVIHQSLKERHELLQKVV-KPSKGRLET---LVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKE--TIENRD 417 (665)
Q Consensus 344 L~lng~~l~~~pl~eRr~~L~~~~-~~~~~~~~~---~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~--ai~~g~ 417 (665)
|++||++++++||.+|+++|++++ .+....+.. +......+++++.. .......++++|+. ++.+|.
T Consensus 147 L~~~G~dl~~~pl~eR~~~L~~~i~~~~~~~~~~~~~~~~~~~~pf~v~~~-------~~~~~~~~~~~~~~~~~~~~g~ 219 (395)
T 1p16_A 147 LAIHGKCIIDRPLPKRLGYITENVMKPFDNFKKHNPDIVNSPEFPFKVGFK-------TMLTSYHADDVLSKMDKLFHAS 219 (395)
T ss_dssp EEETTEECTTSCHHHHHHHHHHHTHHHHHHHHHHCHHHHSCTTSCCEEEEC-------CCEEGGGTHHHHTTGGGCSSCE
T ss_pred EEECCeEcccCCHHHHHHHHHHHhhcccHhhhhcCccccccccCceEEEEe-------cchhHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999964 321100000 00000011122110 01123345666765 346899
Q ss_pred ceEEeecCCCCCccCCCCCCeEEEccccccCCCcceEEEEEEEe--------cCCCCCCcc---ce----EEEEEeeCCC
Q 006003 418 EGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYY--------GSGRRGGEV---AQ----FLVALAERPA 482 (665)
Q Consensus 418 EGlV~K~~~s~Y~~GkRs~~WlKiK~~y~~~g~~~DlvVIG~~~--------G~g~r~g~~---~s----fllg~~d~~~ 482 (665)
||||+|+.+|+|.+| |+.+|+|+|+.+. .|+|++|++++. |+|++ +.+ ++ |.+.+++...
T Consensus 220 EGlI~K~~ds~Y~~G-r~~~wlKwK~~~~---~TvDfvl~~~~~~~~~~~~~g~G~~-~~~~dy~~~p~~~~l~v~~~~~ 294 (395)
T 1p16_A 220 DGLIYTCAETPYVFG-TDQTLLKWKPAEE---NTVDFQLEFVFNEVQDPDLDERDPT-STYLDYDAKPNLIKLRVWQGSN 294 (395)
T ss_dssp EEEEEEESSSCCCSE-EEEEEEEECCGGG---CCEEEEEEEECEEEECTTSCTTSTT-CEEEECSSCCSEEEEEEECSTT
T ss_pred CeEEEEeCCCCcCCC-CccceEEEecCCC---eEEEEEEEEEecccccccccccCcc-ccccccccccceeEEEEEeCCc
Confidence 999999999999998 4569999999764 599999998876 67766 444 33 7777886542
Q ss_pred CCCCCcceEEEEEeccCCCHHHHHHHHHhhccccccccCCCCCCCCceeecCCCCCCCcEEEeCCCceEEEEEeeeceec
Q 006003 483 PDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTI 562 (665)
Q Consensus 483 ~~~~~~~~~~~~kVgsG~s~~~~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~pd~wi~~P~~s~v~ev~a~~~~~ 562 (665)
.++.|+++ |||++++++|.+.+.+ ....|+|+..+.
T Consensus 295 ------~~~~f~~~--~ltd~e~~~l~~~~~~---------------------------------~~~~IvEc~~~~--- 330 (395)
T 1p16_A 295 ------VHTDFAKL--DLSDDDWERLKALEQP---------------------------------LQGRIAECRQST--- 330 (395)
T ss_dssp ------CEEEEEEE--CCCHHHHHHHHHSSSC---------------------------------CTTCEEEEEECS---
T ss_pred ------ccceeeEE--EeCHHHHHHhHhhccc---------------------------------CCCEEEEEEeec---
Confidence 36678877 9999999988654321 112367876532
Q ss_pred ccCccCCCeeeeccEEEEEecCCC-ccCCCCHHHHHHHHHccC
Q 006003 563 RSEVFSAPYSLRFPRIDRVRYDKP-WHDCLDVQSFVELVHSSN 604 (665)
Q Consensus 563 ~s~~~~~g~sLRfPr~~riR~DK~-~~d~~t~~el~~l~~~~~ 604 (665)
+ ..| ||||.|+|+||+ +++.+|+.++.+++....
T Consensus 331 -~---~~g----~wr~~R~R~DK~~pN~~~t~~~vl~si~~~v 365 (395)
T 1p16_A 331 -T---KKG----YWEMLRFRNDKSNGNHISVVEKILVSIKDGV 365 (395)
T ss_dssp -S---STT----EEEEEEECTTCSSCCBHHHHHHHHHHHHHSC
T ss_pred -C---CCC----ccEEEEEeCCCCCcChHHHHHHHHHHHHccC
Confidence 1 234 899999999999 888888888888876544
No 11
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B*
Probab=99.97 E-value=4.5e-31 Score=279.88 Aligned_cols=168 Identities=20% Similarity=0.270 Sum_probs=127.7
Q ss_pred hcCCceEEEEeeceeEEEEEEe---C-CEEEEEecCCCCCCcchhhhHHHHHhhccccceeeeceEEEeeCCCCcccccc
Q 006003 242 LHGKEVVIECKFDGDRIQIHKN---G-SEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFG 317 (665)
Q Consensus 242 ~~~~~~~~E~K~DG~R~qih~~---g-~~v~~~SR~g~d~t~~~p~l~~~~~~~~~~~~~ILDGElv~~d~~~~~~~~F~ 317 (665)
+...+|++|+||||+|+|+|++ | +.+.++||+|++++..+|++.. ....++|||||||++...
T Consensus 72 L~~~~y~ve~K~DG~R~ll~~~~~~g~g~v~L~sR~~~~~t~~fp~~~~-----~~~~~~vLDGElv~~~~~-------- 138 (330)
T 1ckm_A 72 LKQNKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLPFKNIPR-----VLFQGSIFDGELCVDIVE-------- 138 (330)
T ss_dssp HHHSCEEEEEEECSEEEEEEEEEETTEEEEEEECTTCCEEECCCSCCCT-----TGGGCEEEEEEEEEETTT--------
T ss_pred CCcCCEEEEECcceEEEEEEEEecCCCCEEEEEeCCCCEEeccChhhhh-----ccCCCeeEEEEEEEEcCC--------
Confidence 4446799999999999999998 4 7899999999999988887631 235799999999995310
Q ss_pred chHHHHHHhhcCCCCCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCCcceecccCCCCCccccCCCCCcccc
Q 006003 318 SNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSL 397 (665)
Q Consensus 318 ~lq~~~~~~~~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~ 397 (665)
..++|++||+|++||+++++.||.+|+++|++++....... . .+++|+.. . ..
T Consensus 139 ----------------~~~~f~vFDlL~~~G~dl~~~pl~eRr~~L~~~l~~~~~~~-----~--~~~~i~~~---~-~~ 191 (330)
T 1ckm_A 139 ----------------KKFAFVLFDAVVVSGVTVSQMDLASRFFAMKRSLKEFKNVP-----E--DPAILRYK---E-WI 191 (330)
T ss_dssp ----------------TEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHHTTCCCCT-----T--SSSEEEEC---C-CE
T ss_pred ----------------CeEEEEEEeeeeeCCcccccCCHHHHHHHHHHHHhhhcccC-----C--CCeEEEEE---E-EE
Confidence 12789999999999999999999999999999986321000 0 00111110 0 11
Q ss_pred ccCCHHHHHHHH---HHHHHc--CCceEEeecCCCCCccCCCCCCeEEEccccccCCCcceEEEE
Q 006003 398 VAHNVDEVEKFF---KETIEN--RDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLII 457 (665)
Q Consensus 398 ~~~~~~~i~~~~---~~ai~~--g~EGlV~K~~~s~Y~~GkRs~~WlKiK~~y~~~g~~~DlvVI 457 (665)
.. +++++| ..++.+ |.||||+|+.+|+|.+| |+.+|+|+||.+. .++|++|+
T Consensus 192 ---~~-~~~~~~~~~~~~~~~~yg~EGlI~K~~dspY~~G-r~~~~lKwK~~~~---~tvDfvi~ 248 (330)
T 1ckm_A 192 ---PL-EHPTIIKDHLKKANAIYHTDGLIIMSVDEPVIYG-RNFNLFKLKPGTH---HTIDFIIM 248 (330)
T ss_dssp ---ET-TCHHHHHHHHHHHHHHSCEEEEEEEESSSCCCCE-EEEEEEEECSTTC---CCEEEEEC
T ss_pred ---eh-hHHHHHHHHHHHHhccCCCceEEEeeCCCcccCC-CccCeEEEEeCCC---ceEEEEEE
Confidence 12 344555 467788 99999999999999998 6689999999654 59999777
No 12
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens}
Probab=99.95 E-value=5.6e-29 Score=231.54 Aligned_cols=127 Identities=35% Similarity=0.614 Sum_probs=98.6
Q ss_pred eEEEEeeceeEEEEEEeCCEEEEEecCCCCCCcchhhhHHH------HHhhc--cccceeeeceEEEeeCCCCccccccc
Q 006003 247 VVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKI------IEQNV--LVDRCILDGEMLVWDTSLNRFAEFGS 318 (665)
Q Consensus 247 ~~~E~K~DG~R~qih~~g~~v~~~SR~g~d~t~~~p~l~~~------~~~~~--~~~~~ILDGElv~~d~~~~~~~~F~~ 318 (665)
|++|+||||+|||+|++|+++++|||||+++|..||++... +...+ ..++||||||||+||+.++.|.+++.
T Consensus 1 f~~E~K~DG~R~q~~~~g~~v~l~SR~g~d~t~~fPel~~~~~l~~~i~~~~~~~~~~~iLDGEiv~~d~~~~~f~~~~~ 80 (139)
T 3vnn_A 1 FYIETKLDGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQKGT 80 (139)
T ss_dssp CCCCCCCCCEEEEEEEETTEEEEECSSCCBCTTTSCSSTTC--CCSGGGSCCCTTCCEEEEEEEEEEEETTTTEECCC--
T ss_pred CEEEEEECeEEEEEEEECCEEEEEeCCCCCchhhccchhhhcchhHHHHHHHhccCCceEeeeEEEEecCCCCCHHHHHh
Confidence 68999999999999999999999999999999999986531 11222 24789999999999988766666543
Q ss_pred hHHHHHHhhcCCCCCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCCccee
Q 006003 319 NQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLET 376 (665)
Q Consensus 319 lq~~~~~~~~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~ 376 (665)
...+.+. ......++||++|||||+||++|++.||.+||++|++++.+.++++++
T Consensus 81 ~~~~~~~---~~~~~~~~~~~vFDlL~l~G~~L~~~pl~eRr~~L~~l~~~~~~~~~~ 135 (139)
T 3vnn_A 81 KFDIKRM---VEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEI 135 (139)
T ss_dssp --------------CCEEEEEEEEEEEETTEECSSSCHHHHHHHHHHHCCCBTTBSCB
T ss_pred hhhhhhh---hhccCceEEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhcCCCeEEE
Confidence 2111110 112246899999999999999999999999999999999988877654
No 13
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.3e-24 Score=232.90 Aligned_cols=187 Identities=18% Similarity=0.224 Sum_probs=133.6
Q ss_pred HHhcCCceEEEEeeceeEEEEEEe-----C-CEEEEEecCCCCCC---cchhhhHHH----HHhhccccceeeeceEEEe
Q 006003 240 RKLHGKEVVIECKFDGDRIQIHKN-----G-SEIHYFSRSFLDHS---EYGHAMSKI----IEQNVLVDRCILDGEMLVW 306 (665)
Q Consensus 240 ~~~~~~~~~~E~K~DG~R~qih~~-----g-~~v~~~SR~g~d~t---~~~p~l~~~----~~~~~~~~~~ILDGElv~~ 306 (665)
..+...+|++++|+||+|+|+++. | +.+.++||++..++ ..||.+.+. +... ...++|||||||++
T Consensus 60 ~~L~~~dY~V~eK~DGiR~Ll~i~~~~~~g~g~v~LidR~~~~~~v~~~~FP~~~~~~~~~~l~~-~~~~TlLDGElV~d 138 (461)
T 3kyh_C 60 EKLLAHDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNYYLVNGFRFPRLPQKKKEELLET-LQDGTLLDGELVIQ 138 (461)
T ss_dssp HTTSSSCEEEEEEECSEEEEEEEEECTTTCCEEEEEECSSSCEEEECCCCCCCCSSCCSSGGGTC-CCCSEEEEEEEEEE
T ss_pred HHhccCCEEEEEcccceEEEEEEeccccCCCceEEEEeCCCCeEEcccccCCcccccchhhhhhc-cCCCeEEEEEEEec
Confidence 456778999999999999999986 3 68999999999985 468876542 1111 35789999999996
Q ss_pred eCCCCccccccchHHHHHHhhcCCCCCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCC-CCCcceecccC--CCC
Q 006003 307 DTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKP-SKGRLETLVPD--HGL 383 (665)
Q Consensus 307 d~~~~~~~~F~~lq~~~~~~~~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~-~~~~~~~~~p~--~~~ 383 (665)
+.. + ....+++|++||||++||+++++.||.+|+++|++++.. ....+. ..|. ...
T Consensus 139 ~~~------~--------------~~~~~~~y~~FDlL~~~G~dl~~~pl~eR~~~Le~~I~~P~~~~~~-~~p~~~~~~ 197 (461)
T 3kyh_C 139 TNP------M--------------TKLQELRYLMFDCLAINGRCLTQSPTSSRLAHLGKEFFKPYFDLRA-AYPNRCTTF 197 (461)
T ss_dssp ECT------T--------------TCCEEEEEEEEEEEEETTEECSSSBHHHHHHHHHHTTHHHHHHHHH-HCSTTCSCC
T ss_pred cCC------C--------------CCccceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhcccchhhhh-ccccccccC
Confidence 431 1 013578999999999999999999999999999988632 110000 0000 000
Q ss_pred CccccCCCCCccccccCCHHHHHHHHHH--HHHcCCceEEeecCCCCCccCCCCCCeEEEccccccCCCcceEEEEE
Q 006003 384 NSHVRPQGEPCWSLVAHNVDEVEKFFKE--TIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIG 458 (665)
Q Consensus 384 ~~~v~~~~~~~~~~~~~~~~~i~~~~~~--ai~~g~EGlV~K~~~s~Y~~GkRs~~WlKiK~~y~~~g~~~DlvVIG 458 (665)
++.|+.. .| ....+++++|+. ++.+|.||||+|+.+++|.+|.|+.+|+|+||.++ .|+|++++=
T Consensus 198 pF~V~~K---~~----~~~~~~~~l~~~~~~l~~~~EGLv~k~~~spY~~Ggr~~~~lKwKp~~~---nTVDF~L~i 264 (461)
T 3kyh_C 198 PFKISMK---HM----DFSYQLVKVAKSLDKLPHLSDGLIFTPVKAPYTAGGKDSLLLKWKPEQE---NTVDFKLIL 264 (461)
T ss_dssp CSEEEEC---CC----EEGGGHHHHHHHHTTCSSCEEEEEEEESSSBCCSSSEEEEEEECCCTTT---CCCEEEEEC
T ss_pred CcEEEec---cc----hhhhhHHHHHHhhhhccCCCCeEEEEeCCCCCcCCCcCCCeEEEEcCCC---eeEEEEEEe
Confidence 0111100 00 112356667763 37899999999999999999879999999999865 599987653
No 14
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A
Probab=99.90 E-value=2.7e-24 Score=227.76 Aligned_cols=177 Identities=19% Similarity=0.332 Sum_probs=115.9
Q ss_pred hcCCceEEEEeeceeEEEEEEe-CCEEEEEecCCCCCC---cchhhhHHHHHhhccccceeeeceEEEeeCCCCcccccc
Q 006003 242 LHGKEVVIECKFDGDRIQIHKN-GSEIHYFSRSFLDHS---EYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFG 317 (665)
Q Consensus 242 ~~~~~~~~E~K~DG~R~qih~~-g~~v~~~SR~g~d~t---~~~p~l~~~~~~~~~~~~~ILDGElv~~d~~~~~~~~F~ 317 (665)
+...+|++|+||||+|+|+++. ++++.++||+|.+++ ..||++.+. .....++|||||||+++.. +
T Consensus 60 L~~~~y~v~~K~DG~R~ll~i~~~~~v~L~sR~~~~~~~~~~~FP~~~~~---~~~~~~tvLDGElV~~~~~-g------ 129 (343)
T 3rtx_A 60 LEQKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDL---RMHLSNTLLDGEMIIDKVN-G------ 129 (343)
T ss_dssp HHHSCEEEEEECCCEEEEEEECSTTCEEEECTTCCEEEETTCCCEETTEE---EEECCSEEEEEEEEEEESS-S------
T ss_pred hccCCEEEEECCCceEEEEEEEcCCEEEEEeCCCCeEEeccccCCcchhh---hccCCCeEEEEEEEEecCC-C------
Confidence 4446899999999999999998 789999999999985 378876542 2346789999999997642 1
Q ss_pred chHHHHHHhhcCCCCCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhh-cCCCC-----CcceecccCCCCCccccCCC
Q 006003 318 SNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKV-VKPSK-----GRLETLVPDHGLNSHVRPQG 391 (665)
Q Consensus 318 ~lq~~~~~~~~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~-~~~~~-----~~~~~~~p~~~~~~~v~~~~ 391 (665)
...+.|++||+|++||+++++.||.+|+++|++. +.+.. +.+. ....++.|+...
T Consensus 130 ---------------~~~~~~~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~p~~~~~~~~~~~----~~~~pf~vr~K~ 190 (343)
T 3rtx_A 130 ---------------QAVPRYLIYDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLID----KTQEPFSVRPKQ 190 (343)
T ss_dssp ---------------SEEEEEEEEEEEEBTTBCGGGSCHHHHHHHHHHHTHHHHHHHHHHSSCC----TTTSSSEEEECC
T ss_pred ---------------cEeeEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhhHHHHHhhccccc----ccCCCcEEEEEE
Confidence 1246899999999999999999999999999974 32210 0000 000112222110
Q ss_pred CCccccccCCHHHHH-HHHHHHHHcCCceEEeecCCCCCccCCCCCCeEEEccccccCCCcceEEE
Q 006003 392 EPCWSLVAHNVDEVE-KFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLI 456 (665)
Q Consensus 392 ~~~~~~~~~~~~~i~-~~~~~ai~~g~EGlV~K~~~s~Y~~GkRs~~WlKiK~~y~~~g~~~DlvV 456 (665)
.+.....+++. .-|..++.++.||||++..+ +|.+| |+.+|+|+||.+. .|+|+.+
T Consensus 191 ----~~~~~~~~~ll~~~~~~~l~~~~dGlIf~~~~-~Y~~G-~~~~~lKwKp~~~---~tvDF~l 247 (343)
T 3rtx_A 191 ----FFDINISRKLLEGNFAKEVSHEMDGLIFQPIG-KYKPG-RCDDILKWKPPSL---NSVDFRL 247 (343)
T ss_dssp ----CEEGGGHHHHSCC----------CEEEEEESS-CCCCE-EEEEEEEECCSTT---CC-----
T ss_pred ----eEehhhHHHHHhhhhHhhcCCCCCeEEEEECc-cCcCC-CCcceEEEecCcc---eEEEEEE
Confidence 11222222322 12467889999999999999 99987 7889999999764 4899865
No 15
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5}
Probab=99.52 E-value=1.6e-13 Score=147.77 Aligned_cols=155 Identities=18% Similarity=0.222 Sum_probs=110.6
Q ss_pred CCceEEEEeeceeEEEEEEeCCEEEEEecCCCC--CCc-chhh-hHHHHHhhccccceeeeceEEEeeCCCCccccccch
Q 006003 244 GKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLD--HSE-YGHA-MSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSN 319 (665)
Q Consensus 244 ~~~~~~E~K~DG~R~qih~~g~~v~~~SR~g~d--~t~-~~p~-l~~~~~~~~~~~~~ILDGElv~~d~~~~~~~~F~~l 319 (665)
...|++|+|+||.|+++|+.+|++.++||++.. +|. .+|+ +...+... +.+++||||+++++. +|...
T Consensus 94 ~~~~vvEeKlDG~~v~l~y~~G~v~a~TRg~g~e~iT~n~i~~wip~~L~~~--~~~l~L~GEvv~~~~------~f~~~ 165 (389)
T 2vug_A 94 RGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFICPFTTERIPDFVPQEFFKD--NPNLILVGEMAGPES------PYLVE 165 (389)
T ss_dssp SCEEEEEEECCSEEEEEEEETTEEEEEETTSCBCHHHHHHGGGTSCTHHHHH--CTTEEEEEEEESSSC------SSCSC
T ss_pred CCeEEEEEeecCcEEEEEEECCEEEEEeCCCCCCCCchhhhhHhHHHHHhcC--CCcEEEEEEEEecCC------hHHHh
Confidence 468999999999999999999999999999998 543 3455 22222211 577999999988642 34211
Q ss_pred HHHHHHhhcCCC-CCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCCcceecccCCCCCccccCCCCCccccc
Q 006003 320 QEIAKAARDGLS-SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLV 398 (665)
Q Consensus 320 q~~~~~~~~~~~-~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~ 398 (665)
+.. ...++.|++|||++.++.. ..|+.+|+++|+++--+....+. ...
T Consensus 166 ---------n~~np~r~l~F~vFDV~~~~~g~--~~s~~er~~~L~~lG~~~vp~~~--------------------~~~ 214 (389)
T 2vug_A 166 ---------GPPYVKEDIQFFLFDVQEIKTGR--SLPVEERLKIAEEYGINHVEVFG--------------------KYT 214 (389)
T ss_dssp ---------CCTTCCSSCEEEEEEEEETTTCC--BCCHHHHHHHHHHHTCCBCCEEE--------------------EEE
T ss_pred ---------cccCcccCCEEEEEEeeccCCCC--cCCHHHHHHHHHHcCCCCCCeEE--------------------EEc
Confidence 111 2578999999998876333 27899999999998433221111 111
Q ss_pred cCCHHHHHHHHHHHHHcCCceEEeecCCCCCccCCCCCCeEEEcccc
Q 006003 399 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEY 445 (665)
Q Consensus 399 ~~~~~~i~~~~~~ai~~g~EGlV~K~~~s~Y~~GkRs~~WlKiK~~y 445 (665)
..+.+++.++++.+...+.||||+|..+ +. .|+|++..+
T Consensus 215 ~~~~eel~~~i~~~~~~~~EGvViK~~d-------~~-~~lkyt~~~ 253 (389)
T 2vug_A 215 KDDVDELYQLIERLSKEGREGIIMKSPD-------MK-KIVKYVTPY 253 (389)
T ss_dssp GGGHHHHHHHHHHHHHTTCCEEEEECTT-------SC-CEEEEECHH
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEEEECC-------hh-hhcCceecC
Confidence 2257899999999999999999999976 23 577777654
No 16
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus}
Probab=99.42 E-value=1.4e-12 Score=137.50 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=104.6
Q ss_pred HHHHhcCCceEEEEeeceeEEEEEEeCCEEEEEecCCCCC---CcchhhhHH-HHHhhccccceeeeceEEEeeCCCCcc
Q 006003 238 AWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDH---SEYGHAMSK-IIEQNVLVDRCILDGEMLVWDTSLNRF 313 (665)
Q Consensus 238 ~~~~~~~~~~~~E~K~DG~R~qih~~g~~v~~~SR~g~d~---t~~~p~l~~-~~~~~~~~~~~ILDGElv~~d~~~~~~ 313 (665)
.++..-..+|++|+|+||+++-+.+.+|++..+||+|... |...|++.+ .+.+.+ ++++|||||++-+
T Consensus 66 ~i~~~f~~~~~veEKLDG~NVRi~~~dG~ilA~TRgG~icP~tT~r~~~~~~~~f~~~~--P~l~LdGEl~g~~------ 137 (370)
T 3qwu_A 66 GLREQFEAPFWVEEKVDGYNTRIFKYGDNYYALSRGGFICPFTTDRLPDLIDLRILDEN--PDLVICAEVAGPE------ 137 (370)
T ss_dssp HHHHHCSSCEEEEEECSSEEEEEEEETTEEEEECTTSCBCHHHHHHHHHHCCCHHHHHC--TTEEEEEEEECTT------
T ss_pred hhhhcCCCcEEEEEeeCCeEEEEEEECCEEEEEcCCCcccCcchhhhhhhcCchhhhcC--CCeEEEEEEEcCC------
Confidence 3444334689999999999998876677898999999875 344444432 232222 6999999998732
Q ss_pred ccccchHHHHHHhhcCCCCCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCCcceecccCCCCCccccCCCCC
Q 006003 314 AEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEP 393 (665)
Q Consensus 314 ~~F~~lq~~~~~~~~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~ 393 (665)
.||.. ........++.|+||||...+ ....+|+.+|+++|+++-.+....+.
T Consensus 138 npy~~--------~s~~y~~~~i~F~VFDV~d~~--~~~~L~~~eR~~ll~~~~lp~V~ii~------------------ 189 (370)
T 3qwu_A 138 NPYIE--------ESPPYVKEDVQLFVFDFMKKN--EQGFLSQEEKMELIEKYNLPHVEILG------------------ 189 (370)
T ss_dssp CSSCS--------CCCTTCCSSCEEEEEEEEETT--CCSCCCHHHHHHHHHHHTCCBCCEEE------------------
T ss_pred CCccc--------cCCcccccCceEEEEeCcccc--CCCcCCHHHHHHHHHHCCCCCccEEE------------------
Confidence 13320 001112357899999999753 34467999999999998654322111
Q ss_pred ccccccC--CHHHHHHHHHHHHHcCCceEEeecCC
Q 006003 394 CWSLVAH--NVDEVEKFFKETIENRDEGIVLKDLG 426 (665)
Q Consensus 394 ~~~~~~~--~~~~i~~~~~~ai~~g~EGlV~K~~~ 426 (665)
+.... +.+++.+++++..++|.||||+|+++
T Consensus 190 --~~~~~~~~~~~l~~~l~~l~~~g~EGVVlK~~~ 222 (370)
T 3qwu_A 190 --RFTASEEGIKKIKEILKRFNEEGREGVVFKEDS 222 (370)
T ss_dssp --EECSSHHHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred --EeCCCCCCHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 22334 57789999999999999999999985
No 17
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=98.10 E-value=6.4e-06 Score=86.13 Aligned_cols=173 Identities=20% Similarity=0.224 Sum_probs=107.7
Q ss_pred CceEEEEeeceeEEEEEEeCCE-EEEEec----CCCCCCcchhhhHHHHHhhc-cccceeeeceEEEeeCC---------
Q 006003 245 KEVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNV-LVDRCILDGEMLVWDTS--------- 309 (665)
Q Consensus 245 ~~~~~E~K~DG~R~qih~~g~~-v~~~SR----~g~d~t~~~p~l~~~~~~~~-~~~~~ILDGElv~~d~~--------- 309 (665)
-.|++|+|+||..+.+.+.+|. ++..|| .|+|+|.....|... ...+ .+..+.+-||++.-...
T Consensus 113 ~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~I-P~~L~~p~~leVRGEv~m~~~~F~~lN~~~~ 191 (332)
T 1ta8_A 113 VAYCCELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSV-PMRLTEPISVEVRGECYMPKQSFVALNEERE 191 (332)
T ss_dssp CCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTTS-CSBCSSCCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred ceEEEeeeecceEEEEEEECCEEEEEEcCCCCccchhHHHHHHHhcCC-ccccCCCCeEEEEEEEEEEHHHHHHHHHHHH
Confidence 3599999999999999998887 799999 788998643332211 0111 13458899999873210
Q ss_pred -CCccccccchHHHH-HHhhcCCC----CCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCCcceecccCCCC
Q 006003 310 -LNRFAEFGSNQEIA-KAARDGLS----SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGL 383 (665)
Q Consensus 310 -~~~~~~F~~lq~~~-~~~~~~~~----~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~ 383 (665)
.+. .+|..-...+ ...+ ..+ ..+++.|++|++...+|.. -.+..++.+.|+++.=+....
T Consensus 192 ~~g~-~~faNPRNaAAGsLr-qld~~ita~R~L~ff~y~i~~~~~~~--~~t~~e~l~~L~~~GF~v~~~---------- 257 (332)
T 1ta8_A 192 ENGQ-DIFANPRNAAAGSLR-QLDTKIVAKRNLNTFLYTVADFGPMK--AKTQFEALEELSAIGFRTNPE---------- 257 (332)
T ss_dssp HTTC-CCCSSHHHHHHHHHT-CSBHHHHHTSCCEEEEEEESCCTTCC--CSBHHHHHHHHHHTTCCCCTT----------
T ss_pred hcCC-ccccChHHHHHHHHH-ccChhhHhhCCCEEEEEecccccCCC--CCCHHHHHHHHHHcCCCCCCc----------
Confidence 000 1333222111 1111 111 2468999999995333322 368999999999975333211
Q ss_pred CccccCCCCCccccccCCHHHHHHHHHHHHHc------CCceEEeecCCCCCcc----CCCCCCe---EEEccc
Q 006003 384 NSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWEP----GDRSGKW---LKLKPE 444 (665)
Q Consensus 384 ~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~------g~EGlV~K~~~s~Y~~----GkRs~~W---lKiK~~ 444 (665)
...+.+.+++.++++...+. .-.|||+|--+..|.. ..|++.| +|+.++
T Consensus 258 ------------~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~tsk~PRWAiAyKfpae 319 (332)
T 1ta8_A 258 ------------RQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFALQDELGFTVKAPRWAIAYKFPPE 319 (332)
T ss_dssp ------------CEEESSHHHHHHHHHHHHHTGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECC--
T ss_pred ------------ceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHHHhCCcCCCCCceeEecCCCc
Confidence 22457889999999988765 5579999976655542 3467777 455553
No 18
>1s68_A RNA ligase 2; ribonucleic acid ligase, RNA repair; HET: AMP; 1.90A {Enterobacteria phage T4} SCOP: d.142.2.4
Probab=98.03 E-value=7.3e-05 Score=75.66 Aligned_cols=106 Identities=13% Similarity=0.074 Sum_probs=69.5
Q ss_pred hcCCceEEEEeeceeEEEEEEeCCEEEEEecCCCCC--Cc--chhhhHH-------HHHhhcc---ccceeeeceEEEee
Q 006003 242 LHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDH--SE--YGHAMSK-------IIEQNVL---VDRCILDGEMLVWD 307 (665)
Q Consensus 242 ~~~~~~~~E~K~DG~R~qih~~g~~v~~~SR~g~d~--t~--~~p~l~~-------~~~~~~~---~~~~ILDGElv~~d 307 (665)
+.+.+|++++|+||.-+-+...++++.++||++.-. +. .+..+.. .+.+.+. ..+++|-||++...
T Consensus 25 ~~~~~vvvtEKldG~N~~i~~~~~~i~~~sR~~~l~~~~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~GE~~G~~ 104 (249)
T 1s68_A 25 LTGGEWVAREKIHGTNFSLIIERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGPG 104 (249)
T ss_dssp CSCSCEEEEECCCSEEEEEEEESSCEEEEETTEECCTTCCCTTTHHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESTT
T ss_pred cCCCCEEEEEEECCcceEEEEECCEEEEEeCCcccCCCCccchHHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEEcccc
Confidence 456789999999999999998988999999998642 11 1111111 1111111 37899999999632
Q ss_pred CCCCccccccchHHHHHHhhcCCCCCCceEEEEEEEE-eeCCccccCCCHHHHHHHHHhh
Q 006003 308 TSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVL-YVGDTSVIHQSLKERHELLQKV 366 (665)
Q Consensus 308 ~~~~~~~~F~~lq~~~~~~~~~~~~~~~~~~~vFDiL-~lng~~l~~~pl~eRr~~L~~~ 366 (665)
-. .+..-. +..|++|||. ..++.+..-+|..+|+++++.+
T Consensus 105 Iq------------------~~v~Y~-~~~FyvFdI~~~~~~g~~~~l~~~~~~~l~~~~ 145 (249)
T 1s68_A 105 IQ------------------KNVDYC-DKDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 145 (249)
T ss_dssp TS------------------SSCCCC-SCEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred cc------------------CCcccC-CCeEEEEEEEEecCCCccccCCHHHHHHHHHHC
Confidence 00 011111 4589999997 4443323456899999999885
No 19
>2hvq_A ORF1, hypothetical 37.6 kDa protein in GP24-HOC intergenic region; RNA, ligase, lysine adenylate; HET: APK; 2.40A {Enterobacteria phage T4} PDB: 2hvr_A* 2hvs_A*
Probab=98.02 E-value=2.2e-05 Score=82.78 Aligned_cols=106 Identities=12% Similarity=0.065 Sum_probs=69.9
Q ss_pred hcCCceEEEEeeceeEEEEEEeCCEEEEEecCCCCCCc----chhhhHH-------HHHhhcc---ccceeeeceEEEee
Q 006003 242 LHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE----YGHAMSK-------IIEQNVL---VDRCILDGEMLVWD 307 (665)
Q Consensus 242 ~~~~~~~~E~K~DG~R~qih~~g~~v~~~SR~g~d~t~----~~p~l~~-------~~~~~~~---~~~~ILDGElv~~d 307 (665)
+.+.+|++++|+||..+-+...++++.++||++.-.+. .+..... .+.+.+. ..+++|-||++...
T Consensus 26 l~~~~vvvtEKlDG~N~~i~~~~~~i~~~sR~~~l~~~~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~i~GE~~G~~ 105 (335)
T 2hvq_A 26 LTGGEWVAREXIHGTNFSLIIERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGPG 105 (335)
T ss_dssp CSCSCEEEEECCSSEEEEEEEETTEEEEEETTEECCTTCCCTTTHHHHHHHHHHHHHHHTTHHHHTEEEEEEEEEEESBT
T ss_pred cCCCcEEEEEEecCcceEEEEECCEEEEecCCcccCCccccchHHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEccCc
Confidence 45678999999999999999999999999999864221 1111111 1111111 27899999999632
Q ss_pred CCCCccccccchHHHHHHhhcCCCCCCceEEEEEEEE-eeCCccccCCCHHHHHHHHHhh
Q 006003 308 TSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVL-YVGDTSVIHQSLKERHELLQKV 366 (665)
Q Consensus 308 ~~~~~~~~F~~lq~~~~~~~~~~~~~~~~~~~vFDiL-~lng~~l~~~pl~eRr~~L~~~ 366 (665)
-. .+..-. +..|++|||. ..++..-.-+|..+|+++++.+
T Consensus 106 Iq------------------~~i~Y~-~~~FyvFDI~~~~~~~~~~~l~~~~~~~l~~~~ 146 (335)
T 2hvq_A 106 IQ------------------KNVDYG-DKDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 146 (335)
T ss_dssp TB------------------SSCCCC-SSEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred cc------------------CCcccC-CCeEEEEEEEEecCCCceeeCCHHHHHHHHHHc
Confidence 00 011111 4489999997 4343223457999999999986
No 20
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=97.96 E-value=1.3e-05 Score=83.37 Aligned_cols=173 Identities=21% Similarity=0.201 Sum_probs=106.6
Q ss_pred CceEEEEeeceeEEEEEEeCCE-EEEEec----CCCCCCcchhhhHHHHHhhc-cccceeeeceEEEeeCC---------
Q 006003 245 KEVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNV-LVDRCILDGEMLVWDTS--------- 309 (665)
Q Consensus 245 ~~~~~E~K~DG~R~qih~~g~~-v~~~SR----~g~d~t~~~p~l~~~~~~~~-~~~~~ILDGElv~~d~~--------- 309 (665)
-.|++|+|+||..+.+++.+|. ++..|| .|+|+|.....|... ...+ .+..+.+-||++.-...
T Consensus 107 ~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~I-P~~L~~p~~levRGEv~m~~~~F~~lN~~~~ 185 (318)
T 1b04_A 107 AAYVCELAIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSL-PLRLKEPVSLEARGEAFMPKASFLRLNEERK 185 (318)
T ss_dssp CCEEEEEEESSEEEEEEEETTEEEEEEECTTSSCEEBCHHHHHTCTTS-CSBCSSCCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred ceEEEEEecccEEEEEEEECCEEEEEEccCCCcccHHHHHhHHHhcCC-CcccCCCCeEEEEEEEEEEHHHHHHHHHHHH
Confidence 4599999999999999998774 789999 788998644332211 0111 13458899999873210
Q ss_pred -CCccccccchHHHH-HHhhcCCC----CCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCCcceecccCCCC
Q 006003 310 -LNRFAEFGSNQEIA-KAARDGLS----SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGL 383 (665)
Q Consensus 310 -~~~~~~F~~lq~~~-~~~~~~~~----~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~ 383 (665)
.+. .+|..-...+ ...+ ..+ ..+++.|++|++...+|.+ -.+..++.+.|+++.=+....
T Consensus 186 ~~g~-~~faNpRNaAAGsLr-qld~~ita~R~L~ff~y~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~~---------- 251 (318)
T 1b04_A 186 ARGE-ELFANPRNAAAGSLR-QLDPKVAASRQLDLFVYGLADAEALG--IASHSEALDYLQALGFKVNPE---------- 251 (318)
T ss_dssp HC---CCCSCHHHHHHHHHH-SSCHHHHHHTCCEEEEEEETTTTTTT--CCBHHHHHHHHHHTTCCCCTT----------
T ss_pred HcCC-CccchhhHHHHHHHH-ccChhhHhhCCCEEEEEecccccCCC--CCCHHHHHHHHHHcCCCCCCc----------
Confidence 000 1233222111 1111 111 1368999999995333322 368999999999975333211
Q ss_pred CccccCCCCCccccccCCHHHHHHHHHHHHH------cCCceEEeecCCCCCcc----CCCCCCe---EEEccc
Q 006003 384 NSHVRPQGEPCWSLVAHNVDEVEKFFKETIE------NRDEGIVLKDLGSKWEP----GDRSGKW---LKLKPE 444 (665)
Q Consensus 384 ~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~------~g~EGlV~K~~~s~Y~~----GkRs~~W---lKiK~~ 444 (665)
...+.+.+++.++++...+ -.-.|||+|--+..|.. ..|++.| +|+.++
T Consensus 252 ------------~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiA~Kfpae 313 (318)
T 1b04_A 252 ------------RRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAKSPRWAIAYKFPAE 313 (318)
T ss_dssp ------------CEEESSHHHHHHHHHHHHHHSTTCSSCEEEEEEEECBHHHHHHHCCCSSSCTTEEEEECCCC
T ss_pred ------------ceEeCCHHHHHHHHHHHHHHHhhCCCCCCcEEEEecCHHHHHHhCCcCCCCCceeeecCCcc
Confidence 2245788999999988765 34579999976655532 3467777 344443
No 21
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=97.65 E-value=0.00024 Score=73.78 Aligned_cols=155 Identities=20% Similarity=0.206 Sum_probs=93.7
Q ss_pred cCCceEEEEeeceeEEEEEEeCCE-EEEEecC----CCCCCcchhhhHHHHHhhc-cccceeeeceEEEeeCC-------
Q 006003 243 HGKEVVIECKFDGDRIQIHKNGSE-IHYFSRS----FLDHSEYGHAMSKIIEQNV-LVDRCILDGEMLVWDTS------- 309 (665)
Q Consensus 243 ~~~~~~~E~K~DG~R~qih~~g~~-v~~~SR~----g~d~t~~~p~l~~~~~~~~-~~~~~ILDGElv~~d~~------- 309 (665)
....|++|+|+||.-+.+.+.+|. ++..||. |+|+|+....+.. +...+ ....+.+=||++.-...
T Consensus 100 ~~~~~~~epKiDGlavsL~Y~~G~L~~a~TRGDG~~GeDiT~n~~tI~~-IP~~l~~~~~levRGEv~m~~~~F~~~n~~ 178 (305)
T 4glw_A 100 AHPTYICELKIDGLSISLTYEKGILVAGVTRGDGSIGENITENLKRVKD-IPLTLPEELDITVRGECYMPRASFDQVNQA 178 (305)
T ss_dssp SSCCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEECHHHHTTSTT-SCSBCSSCCCEEEEEEEECCHHHHHHHHHH
T ss_pred CCCcEEEEeeecceEEEEEEeCCeEEEEEecCCCcchhhHHHHHhhccC-CcccCCCcccccccceEEeehhhHHHHHHH
Confidence 356799999999999999887776 7899998 7888853222211 00111 23457889999862110
Q ss_pred ---CCccccccchHHHH-HHhhcCCC----CCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCCcceecccCC
Q 006003 310 ---LNRFAEFGSNQEIA-KAARDGLS----SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDH 381 (665)
Q Consensus 310 ---~~~~~~F~~lq~~~-~~~~~~~~----~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~ 381 (665)
.+ -.+|..-+..+ ...+ ..+ ...++.|++|++..-+| .....++.+.|.++-=+...
T Consensus 179 ~~~~g-~~~faNpRNaaAGslr-q~d~~~~~~r~L~f~~y~~~~~~~----~~s~~e~l~~L~~~Gf~~~~--------- 243 (305)
T 4glw_A 179 RQENG-EPEFANPRNAAAGTLR-QLDTAVVAKRNLATFLYQEASPST----RDSQEKGLKYLEQLGFVVNP--------- 243 (305)
T ss_dssp HHHTT-CCCCSSHHHHHHHHHS-SSBHHHHHHSCCEEEEEEESSSCS----SSBHHHHHHHHHHHTCCCCC---------
T ss_pred HHhcC-CccchhhhHHHhhhhh-ccCchhhhhhcceEEEeeeccccc----cchHHHHHHHHHhCCCccCC---------
Confidence 00 01232222211 1111 111 13579999999876554 24678899999887322211
Q ss_pred CCCccccCCCCCccccccCCHHHHHHHHHHHHHcC----C--ceEEeecCC
Q 006003 382 GLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENR----D--EGIVLKDLG 426 (665)
Q Consensus 382 ~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g----~--EGlV~K~~~ 426 (665)
....+.+.+++.+++++..+.+ + .|||+|--+
T Consensus 244 -------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGiVikvn~ 281 (305)
T 4glw_A 244 -------------KRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVND 281 (305)
T ss_dssp -------------CCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEECB
T ss_pred -------------ceEEeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEEeC
Confidence 1234578899999888776543 2 399999543
No 22
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=97.58 E-value=0.00025 Score=79.75 Aligned_cols=223 Identities=18% Similarity=0.254 Sum_probs=131.2
Q ss_pred CceEEEEeeceeEEEEEEeCCE-EEEEec----CCCCCCcchhhhHHHHHhhc----cccceeeeceEEEeeCC------
Q 006003 245 KEVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNV----LVDRCILDGEMLVWDTS------ 309 (665)
Q Consensus 245 ~~~~~E~K~DG~R~qih~~g~~-v~~~SR----~g~d~t~~~p~l~~~~~~~~----~~~~~ILDGElv~~d~~------ 309 (665)
..|++|+|+||.-+.+.+.+|. ++..|| .|+|+|+....+.. +...+ .+..+.+=||++.-...
T Consensus 108 ~~~~~epKiDGlavsL~Ye~G~Lv~a~TRGDG~~GeDiT~nvrtI~~-IPl~l~~~~~p~~leVRGEv~m~~~~F~~ln~ 186 (586)
T 4glx_A 108 VTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRA-IPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186 (586)
T ss_dssp -CEEEEEEESSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTT-SCSBCCSSSCCSEEEEEEEEECCHHHHHHHHH
T ss_pred ceEEEEEeecceEEEEEEeCCEEEEEEccCCCcccccHHHHHHhccC-cccccccCCCCceEEEEEEEEEEhhhccccch
Confidence 4699999999999999888776 789999 47788853222211 00011 13457788999862110
Q ss_pred ----CCccccccchHHHH-HHhhcCCC----CCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCCcceecccC
Q 006003 310 ----LNRFAEFGSNQEIA-KAARDGLS----SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPD 380 (665)
Q Consensus 310 ----~~~~~~F~~lq~~~-~~~~~~~~----~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~ 380 (665)
.+ -.+|..-+..+ ...+ ..+ ..+++.|++|++...+|..+. ....++.+.|+++-=+...
T Consensus 187 ~~~~~g-~~~faNpRNaaAGslr-qld~~~~a~r~L~f~~y~v~~~~~~~~~-~t~~e~l~~L~~~Gf~v~~-------- 255 (586)
T 4glx_A 187 DARRTG-GKVFANPRNAAAGSLR-QLDPRITAKRPLTFFCYGVGVLEGGELP-DTHLGRLLQFKKWGLPVSD-------- 255 (586)
T ss_dssp HHHHTT-CCCCSCHHHHHHHHHT-CSCHHHHHTSCCEEEEEEEEEEESSCCC-SBHHHHHHHHHHTTCCCCT--------
T ss_pred hhhhcc-CccchhhHHHHhcccc-ccchhhhhccccceeEeeeeeeeccccc-ccHHHHHHHHHHcCCCCcc--------
Confidence 00 01232222221 1111 111 246899999999988876542 4678999999886322211
Q ss_pred CCCCccccCCCCCccccccCCHHHHHHHHHHHHHcCC------ceEEeecCCCCCcc--C--CCCCCe---EEEcccccc
Q 006003 381 HGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRD------EGIVLKDLGSKWEP--G--DRSGKW---LKLKPEYIR 447 (665)
Q Consensus 381 ~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~------EGlV~K~~~s~Y~~--G--kRs~~W---lKiK~~y~~ 447 (665)
....+.+.+++.+++++....+. .|||+|--+-.+.. | .+++.| +|+.++
T Consensus 256 --------------~~~~~~~~~~~~~~~~~~~~~R~~l~y~iDGiVikvn~~~~~~~lG~ts~~PrwAiA~Kfp~e--- 318 (586)
T 4glx_A 256 --------------RVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQ--- 318 (586)
T ss_dssp --------------TCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEECCCCC---
T ss_pred --------------ceeeeccHHHHHHHHHHHHHhhhcccccCCceEEEecchhhhhccCCccCCCCeeEEEcccch---
Confidence 12345688899888887665433 69999964433221 2 356677 455443
Q ss_pred CCCcceEEEEEEEecCCCCCCccceEEEEEeeCCC-CCCCCcceEEEEEeccCCCHHHHHHHH
Q 006003 448 AGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPA-PDTYPRRFISFCRVGTGLSDEELDAVV 509 (665)
Q Consensus 448 ~g~~~DlvVIG~~~G~g~r~g~~~sfllg~~d~~~-~~~~~~~~~~~~kVgsG~s~~~~~~l~ 509 (665)
...-.|.+..|..|| .|.+.-. |..++-. + + .+|.++ |..+.++.+.+.
T Consensus 319 ---~~~T~v~~I~~qVGR-TG~iTPv--A~lePV~l~----G--~tVsra-TLhN~~~I~~~d 368 (586)
T 4glx_A 319 ---EQMTFVRDVEFQVGR-TGAITPV--ARLEPVHVA----G--VLVSNA-TLHNADEIERLG 368 (586)
T ss_dssp ---EEEEEEEEEEEEECT-TSBEEEE--EEEEEEEET----T--EEEEEE-ECCCHHHHHHHT
T ss_pred ---hheeEeEEEEEecCC-ceEEEEE--EEEeeEEeC----C--EEEEec-ccCCHHHHHhcC
Confidence 445577788887775 4555443 2222210 0 1 245555 788988888764
No 23
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=97.51 E-value=0.00089 Score=69.69 Aligned_cols=157 Identities=20% Similarity=0.233 Sum_probs=96.5
Q ss_pred ceEEEEeeceeEEEEEEeCCE-EEEEec----CCCCCCcchhhhHHHHHhhc----cccceeeeceEEEeeCC-------
Q 006003 246 EVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNV----LVDRCILDGEMLVWDTS------- 309 (665)
Q Consensus 246 ~~~~E~K~DG~R~qih~~g~~-v~~~SR----~g~d~t~~~p~l~~~~~~~~----~~~~~ILDGElv~~d~~------- 309 (665)
.|++|+|+||.-+.+.+.+|. ++..|| .|+|+|.....|.. +...+ .+..+.+=||++.-...
T Consensus 108 ~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IPl~L~~~~~p~~leVRGEv~m~~~~F~~lN~~ 186 (322)
T 3uq8_A 108 TFCCEPKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRN-VPLQLLTDNPPARLEVRGEVFMPHAGFERLNKY 186 (322)
T ss_dssp EEEEEEEESSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHHTCTT-SCSBCSCSSCCSEEEEEEEEECCHHHHHHHHHH
T ss_pred eEEEEEeeceEEEEEEEeCCEEEEEEecCCCccchhHHHHHHHhcC-CCccccCCCCCceEEEEEEEEeeHHHHHHHHHH
Confidence 699999999999999987776 789999 47788853322211 00111 13457789999863110
Q ss_pred ---CCccccccchHHHH-HHhhcCCC----CCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCCcceecccCC
Q 006003 310 ---LNRFAEFGSNQEIA-KAARDGLS----SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDH 381 (665)
Q Consensus 310 ---~~~~~~F~~lq~~~-~~~~~~~~----~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~ 381 (665)
.+. .+|..-...+ ...+ ..+ ..+++.|++|.+...+|..+ ..+..++.+.|+++-=++..
T Consensus 187 ~~~~g~-~~faNPRNaAAGsLR-qld~~ita~R~L~ff~y~~~~~~~~~~-~~t~~e~l~~L~~~Gf~v~~--------- 254 (322)
T 3uq8_A 187 ALEHNE-KTFANPRNAAAGSLR-QLDPNITSKRPLVLNAYGIGIAEGVDL-PTTHYARLQWLKSIGIPVNP--------- 254 (322)
T ss_dssp HHHTTC-CCCSSHHHHHHHHHT-CSCHHHHTTSCCEEEEEEEEEEESCCC-CSBHHHHHHHHHHTTCCCCT---------
T ss_pred HHHhCC-ccccchhHHHHHHHh-hcChhhhhcCccEEEEEeccccCCCCC-CCCHHHHHHHHHHcCCCCCC---------
Confidence 000 2332222111 1111 111 24689999999987766432 35789999999987432221
Q ss_pred CCCccccCCCCCccccccCCHHHHHHHHHHHHHcCC------ceEEeecCCCC
Q 006003 382 GLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRD------EGIVLKDLGSK 428 (665)
Q Consensus 382 ~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~------EGlV~K~~~s~ 428 (665)
....+.+.+++.++++...+.+. .|||+|--+-.
T Consensus 255 -------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~ 294 (322)
T 3uq8_A 255 -------------EIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIA 294 (322)
T ss_dssp -------------TCEEEESHHHHHHHHHHHHHTTTTTSSCEEEEEEEESBHH
T ss_pred -------------CcEEeCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCHH
Confidence 12345688999999998865543 59999964433
No 24
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=97.46 E-value=1.9e-05 Score=82.62 Aligned_cols=167 Identities=16% Similarity=0.169 Sum_probs=102.9
Q ss_pred CceEEEEeeceeEEEEEEeCCE-EEEEec----CCCCCCcchhhhHHHHHhhc-------cccceeeeceEEEeeCC---
Q 006003 245 KEVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNV-------LVDRCILDGEMLVWDTS--- 309 (665)
Q Consensus 245 ~~~~~E~K~DG~R~qih~~g~~-v~~~SR----~g~d~t~~~p~l~~~~~~~~-------~~~~~ILDGElv~~d~~--- 309 (665)
..|++|+|+||..+.+++.+|. ++..|| .|+|+|.....|... ...+ .+..+.+-||++.-...
T Consensus 116 ~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~I-P~~L~~g~~~~~p~~leVRGEv~m~~~~F~~ 194 (328)
T 1zau_A 116 AHYLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADV-PERLTPGDDYPVPEVLEVRGEVFFRLDDFQA 194 (328)
T ss_dssp SCEEEEEEECSEEEEEECGGGBCCBCBBCTTSSEECBCHHHHHHSSSC-CSBCCCBTTBCCCSCCEEEEEEBCCHHHHHH
T ss_pred cceEEeeecceEEEEEEEECCEEEEEEccCCCcccHHHHHHHHHhcCC-ChhhccCCcCCCCCeEEEEEEEEEEHHHHHH
Confidence 3699999999999999997664 789999 788998644333211 0112 13347899999874210
Q ss_pred -------CCccccccchHHHH-HHhhcCCC----CCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCCcceec
Q 006003 310 -------LNRFAEFGSNQEIA-KAARDGLS----SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETL 377 (665)
Q Consensus 310 -------~~~~~~F~~lq~~~-~~~~~~~~----~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~ 377 (665)
.+. .+|..-...+ ...+ ..+ ..+++.|++|++...++.. -.+..++.+.|+++-=++..
T Consensus 195 lN~~~~~~g~-~~faNPRNaAAGsLr-qld~~ita~R~L~f~~y~i~~~~~~~--~~t~~e~l~~L~~~Gf~v~~----- 265 (328)
T 1zau_A 195 LNASLVEEGK-APFANPRNSAAGSLR-QKDPAVTARRRLRMICHGLGHVEGFR--PATLHQAYLALRAWGLPVSE----- 265 (328)
T ss_dssp HHHSCSSTTS-CCCSSHHHHHHHHHT-CSSHHHHHHSCCBCCCCBCCCCSSCC--CSBHHHHHHHHHTTTCCCCC-----
T ss_pred HHHHHHHcCC-ccccChHHHHHHHHH-ccChhhhhcCcceEEEEeccccCCCC--CCCHHHHHHHHHHcCCCCCC-----
Confidence 010 2443322221 1111 111 1357999999996544432 25789999999987433211
Q ss_pred ccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHc------CCceEEeecCCCCCcc----CCCCCCe
Q 006003 378 VPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSKWEP----GDRSGKW 438 (665)
Q Consensus 378 ~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~------g~EGlV~K~~~s~Y~~----GkRs~~W 438 (665)
....+.+.+++.++++...+. .-.|||+|--+-.|.. ..|++.|
T Consensus 266 -----------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRW 319 (328)
T 1zau_A 266 -----------------HTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRW 319 (328)
T ss_dssp -----------------CCCCBCHHHHHHHHHHHTTTTCSSCSSCEEEEEEEECBHHHHTTSCBCSSSBSS
T ss_pred -----------------ceEEeCCHHHHHHHHHHHHHHHhcCCCCCceEEEEecCHHHHHHhCccCCCCCc
Confidence 022356789999999887655 4479999976555432 2356666
No 25
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens}
Probab=97.41 E-value=0.00023 Score=68.96 Aligned_cols=179 Identities=12% Similarity=0.115 Sum_probs=117.8
Q ss_pred ccccccccCCHHHHHHHhcCCceEEEEeeceeEEEEEEeCCEEEEEecCCCCCCc---chhhhHHHHHhhccccceeeec
Q 006003 225 RPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE---YGHAMSKIIEQNVLVDRCILDG 301 (665)
Q Consensus 225 ~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qih~~g~~v~~~SR~g~d~t~---~~p~l~~~~~~~~~~~~~ILDG 301 (665)
+.||++-..++++-+. .+|++=+===|.||+++...|....+||+|..+.. ..|+=... ......-+|||+
T Consensus 5 ~lmlsEWl~diP~dl~----~~Wl~vp~P~GkRcLvva~~G~T~~~~k~G~~~~~F~S~LPgG~~~--~~~~~~~tILDC 78 (204)
T 1xk5_A 5 QLMLSEWLIDVPSDLG----QEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRR--NSTAKDYTILDC 78 (204)
T ss_dssp CSEEEEECCSCCTTHH----HHEEEEEEESSEEEEEEEETTEEEEECTTSCEEEEECCSSSSSCSS--SCCTTCCEEEEE
T ss_pred chhhhhhcccCCCccC----CCeEEEECCCCcEEEEEecCCeEEEECCCCcEEEEEcccCCCCCcc--cCCCCCCEEEEE
Confidence 5688887665554322 36988898999999999999999999999986532 23321100 000134689998
Q ss_pred eEEEeeCCCCccccccchHHHHHHhhcCCCCCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCCcceecccCC
Q 006003 302 EMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDH 381 (665)
Q Consensus 302 Elv~~d~~~~~~~~F~~lq~~~~~~~~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~ 381 (665)
+|++. .-+|+|-|+|..||.++.+-..+-|.-.|++-+.+.++.-+.-. ..
T Consensus 79 ---I~~e~-------------------------~~tyYVLDvl~W~g~~l~dcetefRffWl~skl~E~~~l~~~s~-~n 129 (204)
T 1xk5_A 79 ---IYNEV-------------------------NQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTK-LN 129 (204)
T ss_dssp ---EEEGG-------------------------GTEEEEEEEEEETTEECTTSCHHHHHHHHHHHTTTSTTTTSCBT-TB
T ss_pred ---EEecC-------------------------CcEEEEEEEEEECCceeecCcHHHHHHHHHHHhccccccccccc-cC
Confidence 33321 11599999999999999999999999999998877542111100 00
Q ss_pred CCCccccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecCCCCCccCCCCCCeEEEccccc
Q 006003 382 GLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI 446 (665)
Q Consensus 382 ~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~~s~Y~~GkRs~~WlKiK~~y~ 446 (665)
...+..- | .+.+ +.+.+.+++.....--..|+.+=..++.|.+|. ++-+.=+||..+
T Consensus 130 ~~~f~~l----p--~~~c-~~~~l~~~~~~~~~~~~DGlLFyHK~a~Y~~G~-TPLv~WLkp~ml 186 (204)
T 1xk5_A 130 PFKFVGL----K--NFPC-TPESLCDVLSMDFPFEVDGLLFYHKQTHYSPGS-TPLVGWLRPYMV 186 (204)
T ss_dssp SSEEEEC----C--EEEC-SHHHHHHHHTCCCSSCEEEEEEEESSCCCCSEE-EEEEEEECGGGH
T ss_pred CcceEec----c--cccC-CHHHHHHHHccCCCCCcceEEEEeccccccCCC-CChhhhcchhhc
Confidence 0000000 0 2233 466677766655556778999999999999994 664444578654
No 26
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=97.37 E-value=0.00047 Score=71.57 Aligned_cols=158 Identities=20% Similarity=0.193 Sum_probs=95.9
Q ss_pred CCceEEEEeeceeEEEEEEeCCE-EEEEec----CCCCCCcchhhhHHHHHhhc-cccceeeeceEEEeeC---------
Q 006003 244 GKEVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNV-LVDRCILDGEMLVWDT--------- 308 (665)
Q Consensus 244 ~~~~~~E~K~DG~R~qih~~g~~-v~~~SR----~g~d~t~~~p~l~~~~~~~~-~~~~~ILDGElv~~d~--------- 308 (665)
...|++|+|+||.-+.+.+.+|. ++..|| .|+|+|.....+.. +...+ ....+.+=||++.--.
T Consensus 104 ~~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~~~~~levRGEv~m~~~~F~~lN~~~ 182 (318)
T 3jsl_A 104 NVEYMCELKIDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHA-IPLKMKEPLNVEVRGEAYMPRRSFLRLNEEK 182 (318)
T ss_dssp SCCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTT-SCSBCSSCCCEEEEEEEECCHHHHHHHHHHH
T ss_pred CceEEEEEeecceEEEEEEECCEEEEEEeCCCCccchhHHHHHHHhcC-CccccCCCCcEEEEEEEEEcHHHHHHHHHHH
Confidence 34799999999999999887775 689999 57788853322211 00011 1235788999986210
Q ss_pred -CCCccccccchHHHH-HHhhcCCC----CCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCCcceecccCCC
Q 006003 309 -SLNRFAEFGSNQEIA-KAARDGLS----SDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHG 382 (665)
Q Consensus 309 -~~~~~~~F~~lq~~~-~~~~~~~~----~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~ 382 (665)
..+. .+|..-...+ ...+ ..+ ..+++.|++|++...+|.. ..+..++.+.|+++-=++..
T Consensus 183 ~~~g~-~~faNPRNaAAGsLR-qld~~ita~R~L~ff~y~~~~~~~~~--~~t~~e~l~~L~~~GF~v~~---------- 248 (318)
T 3jsl_A 183 EKNDE-QLFANPRNAAAGSLR-QLDSKLTAKRKLSVFIYSVNDFTDFN--ARSQSEALDELDKLGFTTNK---------- 248 (318)
T ss_dssp BTTBC-CCCSSHHHHHHHHHS-CSCHHHHHHSCCEEEEEEESCCTTCC--CSBHHHHHHHHHHHTCCCCT----------
T ss_pred HHhCC-ccccChHHHHHHHHH-ccChhhhhhCcceEEEEecccccCCC--CCCHHHHHHHHHHCCCCcCC----------
Confidence 0010 2343322211 1111 111 1368999999998765533 35788999999987432211
Q ss_pred CCccccCCCCCccccccCCHHHHHHHHHHHHHc------CCceEEeecCCCC
Q 006003 383 LNSHVRPQGEPCWSLVAHNVDEVEKFFKETIEN------RDEGIVLKDLGSK 428 (665)
Q Consensus 383 ~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~------g~EGlV~K~~~s~ 428 (665)
....+.+.+++.++++...+. .-.|||+|--+-.
T Consensus 249 ------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~ 288 (318)
T 3jsl_A 249 ------------NRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLD 288 (318)
T ss_dssp ------------TCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHH
T ss_pred ------------cceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCHH
Confidence 123457889999999887542 3369999965433
No 27
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=97.19 E-value=0.00097 Score=69.23 Aligned_cols=180 Identities=13% Similarity=0.114 Sum_probs=116.7
Q ss_pred ccccccccCCHHHHHHHhcCCceEEEEeeceeEEEEEEeCCEEEEEecCCCCCC---cchhhhHHHHHhhccccceeeec
Q 006003 225 RPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHS---EYGHAMSKIIEQNVLVDRCILDG 301 (665)
Q Consensus 225 ~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qih~~g~~v~~~SR~g~d~t---~~~p~l~~~~~~~~~~~~~ILDG 301 (665)
+.||++-.-++++-+ +.+|++=+===|.||+|+...|....+||+|.-+. ...|+=...- . ....-+|||+
T Consensus 106 qlMlsEWl~dvP~dL----~~~W~~vpcPvGkRcLVVas~G~T~aysk~G~~l~~F~S~LPGG~~~~-s-~~~~~TILDC 179 (365)
T 3gjx_B 106 QLMLSEWLIDVPSDL----GQEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRN-S-TAKDYTILDC 179 (365)
T ss_dssp CSEEEEECCSCCTTH----HHHEEEEEEESSEEEEEEEETTEEEEECTTCCEEEEECCSSTTTCC------CCCCEEEEE
T ss_pred hHHHHHhcccCCccc----ccCeeEEeccCCcEEEEEecCceEEEECCCCCEEeeeCCCCCCCCccc-c-CCCCCEEEEE
Confidence 578888765554322 13688888888999999999999999999997643 2334311110 0 1245789998
Q ss_pred eEEEeeCCCCccccccchHHHHHHhhcCCCCCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCCcceecccCC
Q 006003 302 EMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDH 381 (665)
Q Consensus 302 Elv~~d~~~~~~~~F~~lq~~~~~~~~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~ 381 (665)
+|++.. -+|+|.|||..+|.++.+.+..-|.-.|++-+.+.++--+.- ...
T Consensus 180 ---Iy~e~~-------------------------~tyYVLDVL~W~g~~l~dCeteFRffWl~SKL~E~~~l~e~s-~~n 230 (365)
T 3gjx_B 180 ---IYNEVN-------------------------QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKT-KLN 230 (365)
T ss_dssp ---EEETTT-------------------------TEEEEEEEEEETTEECTTSCHHHHHHHHHHHGGGSTTTTSCC-SSC
T ss_pred ---EeecCC-------------------------ceEEEEEEeeeCCcccccCchHHHHHHHHHHhhhcccccccc-cCC
Confidence 344321 169999999999999999999999999999887643211000 000
Q ss_pred CCCccccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecCCCCCccCCCCCCeEEEcccccc
Q 006003 382 GLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIR 447 (665)
Q Consensus 382 ~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~~s~Y~~GkRs~~WlKiK~~y~~ 447 (665)
...+..- | .+.+ +.+.+...+..-..--..||.+=.-.+.|.+| .++-+.=+||..+.
T Consensus 231 p~~Fv~l----p--~~~C-~~esL~~~ls~~~pfe~DGLLFYHK~ahY~~G-~TPLVgWLkPyMv~ 288 (365)
T 3gjx_B 231 PFKFVGL----K--NFPC-TPESLCDVLSMDFPFEVDGLLFYHKQTHYSPG-STPLVGWLRPYMVS 288 (365)
T ss_dssp CSEEEEC----C--EEEC-CHHHHHHHTTCCCSSCEEEEEEEETTCCCCSE-EEEEEEEECHHHHT
T ss_pred CCceecc----C--CCCc-CHHHHHHHhccCCCCccceEEEEeccccccCC-CCccceecchhhhH
Confidence 0000000 1 2223 45666666554444567899999999999998 46655556675443
No 28
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4
Probab=97.02 E-value=0.0013 Score=66.24 Aligned_cols=120 Identities=22% Similarity=0.262 Sum_probs=72.5
Q ss_pred hcCCceEEEEeeceeEEEEEE--eCCE--EEEEecCCCC-----CCcc---hhhhHHHHH---hhc-------cccceee
Q 006003 242 LHGKEVVIECKFDGDRIQIHK--NGSE--IHYFSRSFLD-----HSEY---GHAMSKIIE---QNV-------LVDRCIL 299 (665)
Q Consensus 242 ~~~~~~~~E~K~DG~R~qih~--~g~~--v~~~SR~g~d-----~t~~---~p~l~~~~~---~~~-------~~~~~IL 299 (665)
+.+..|.+.+|.||...-+.. +++. +++.||++.- +-.+ .+.+...+. +.+ ....+++
T Consensus 30 l~~~ewvatEKIHGaNFsii~~~d~~~~~i~~akRs~~l~~~e~FfGy~~i~~~l~~~~~~l~~~l~~~~~~~~~~~v~V 109 (277)
T 1xdn_A 30 LAAQEWVACEKVHGTNFGIYLINQGDHEVVRFAKRSGIMDPNENFFGYHILIDEFTAQIRILNDLLKQKYGLSRVGRLVL 109 (277)
T ss_dssp GGGSCEEEEEECCSEEEEEEEEEETTEEEEEEEETTEECCTTCCCTTGGGGHHHHHHHHHHHHHHHHHHHTCSCCSEEEE
T ss_pred CCCCcEEEEEeeccccEEEEEecCCCeeEEEEeecccccCcccccccHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEE
Confidence 345689999999999999988 7877 9999999742 2211 133322211 111 1478999
Q ss_pred eceEEEee---CCC-----------CccccccchHHHHHHhhcCCCCC--CceEEEEEEEEeeCC---ccccCCCHHHHH
Q 006003 300 DGEMLVWD---TSL-----------NRFAEFGSNQEIAKAARDGLSSD--RQLCYFAFDVLYVGD---TSVIHQSLKERH 360 (665)
Q Consensus 300 DGElv~~d---~~~-----------~~~~~F~~lq~~~~~~~~~~~~~--~~~~~~vFDiL~lng---~~l~~~pl~eRr 360 (665)
=||+..|. +.. .+..|+.. + ..+.+.-.+ ..+.|+||||.+.++ .+...+++.+=.
T Consensus 110 yGELfGg~y~hp~v~~~~~~~~~~~~~~~p~~~-~----~IQ~~i~~~Y~p~~~FYaFDI~~~~~~~~~~~~~L~fd~~~ 184 (277)
T 1xdn_A 110 NGELFGAKYKHPLVPKSEKWCTLPNGKKFPIAG-V----QIQREPFPQYSPELHFFAFDIKYSVSGAEEDFVLLGYDEFV 184 (277)
T ss_dssp EEEEEEEECCCTTSCCCCCEEECTTSCEEEGGG-C----CSCCCSSCCCEEEEEEEEEEEEEESSCCGGGEEECCHHHHH
T ss_pred EEEEecCccCCccccccccccccCccccCcccc-c----ccccccccccCCCceEEEEEEEEecCCCccccccCCHHHHH
Confidence 99999886 110 00012100 0 011122001 268999999998753 234568888877
Q ss_pred HHHHhh
Q 006003 361 ELLQKV 366 (665)
Q Consensus 361 ~~L~~~ 366 (665)
+.+.+.
T Consensus 185 ~~~~~~ 190 (277)
T 1xdn_A 185 EFSSKV 190 (277)
T ss_dssp HHHHTS
T ss_pred HHHHHh
Confidence 777764
No 29
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=97.01 E-value=0.003 Score=72.00 Aligned_cols=221 Identities=19% Similarity=0.241 Sum_probs=129.8
Q ss_pred ceEEEEeeceeEEEEEEeCCE-EEEEec----CCCCCCcchhhhHHHHHhhcc----ccceeeeceEEEeeCC-------
Q 006003 246 EVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNVL----VDRCILDGEMLVWDTS------- 309 (665)
Q Consensus 246 ~~~~E~K~DG~R~qih~~g~~-v~~~SR----~g~d~t~~~p~l~~~~~~~~~----~~~~ILDGElv~~d~~------- 309 (665)
.|++|+|+||.-+.+.+.+|. ++..|| .|+|+|.....+.. +...+. +..+.+=||++.-...
T Consensus 109 ~~~~e~KiDGlaisL~Ye~G~Lv~a~TRGDG~~GEdvT~n~rtI~~-IP~~l~~~~~p~~levRGEv~m~~~~F~~lN~~ 187 (671)
T 2owo_A 109 TWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRA-IPLKLHGENIPARLEVRGEVFLPQAGFEKINED 187 (671)
T ss_dssp CEEEEEEESSEEEEEEEETTEEEEEECCTTSSEEEBCHHHHHTCTT-SCSBCCSSSCCSEEEEEEEEECCHHHHHHHHHH
T ss_pred eEEEEEecceEEEEEEEeCCEEEEEEecCCCcchhhHHHHHhhhcC-CCccccCCCCCCeEEEEEEEEEEHHHHHHHHHH
Confidence 699999999999999998776 678999 56778753222211 000111 3347889999863110
Q ss_pred ---CCccccccchHHHH-HHhhcCCC----CCCceEEEEEEEEeeCC-ccccCCCHHHHHHHHHhhcCCCCCcceecccC
Q 006003 310 ---LNRFAEFGSNQEIA-KAARDGLS----SDRQLCYFAFDVLYVGD-TSVIHQSLKERHELLQKVVKPSKGRLETLVPD 380 (665)
Q Consensus 310 ---~~~~~~F~~lq~~~-~~~~~~~~----~~~~~~~~vFDiL~lng-~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~ 380 (665)
.+. .+|..-...+ ...| ..+ ..+++.|++|++...+| .. -.+..++.+.|+++-=+....
T Consensus 188 ~~~~g~-~~faNpRNaaAGsLr-qld~~~~a~R~L~~~~y~~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~~------- 256 (671)
T 2owo_A 188 ARRTGG-KVFANPRNAAAGSLR-QLDPRITAKRPLTFFCYGVGVLEGGEL--PDTHLGRLLQFKKWGLPVSDR------- 256 (671)
T ss_dssp HHHSSC-CCCSCHHHHHHHHHT-CSCHHHHHTSCCEEEEEEEEEEESSCC--CSBHHHHHHHHHHHTCCCCTT-------
T ss_pred HHhcCC-CcccChHHHHHHHHH-hcChhhHhcCCCEEEEEECcccCCCCC--CCCHHHHHHHHHHCCCCCCCc-------
Confidence 000 1233222211 1111 111 24689999999976554 32 257899999999875332211
Q ss_pred CCCCccccCCCCCccccccCCHHHHHHHHHHHHHcC------CceEEeecCCCCCc----cCCCCCCe---EEEcccccc
Q 006003 381 HGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENR------DEGIVLKDLGSKWE----PGDRSGKW---LKLKPEYIR 447 (665)
Q Consensus 381 ~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g------~EGlV~K~~~s~Y~----~GkRs~~W---lKiK~~y~~ 447 (665)
...+.+.+++.+++++..+.+ -.|+|+|--+-.+. .-.|++.| +|+.++
T Consensus 257 ---------------~~~~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~~~~q~~LG~t~k~PrWAiA~Kfpae--- 318 (671)
T 2owo_A 257 ---------------VTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQ--- 318 (671)
T ss_dssp ---------------CEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECCCC---
T ss_pred ---------------ceeeCCHHHHHHHHHHHHHHHhcCCCCCccEEEEecCHHHHHHhCcccCCCCceEEEcCCCc---
Confidence 234578999999998875543 36999996544332 12366777 677775
Q ss_pred CCCcceEEEEEEEecCCCCCCccceEEEEEeeCCC-CCCCCcceEEEEEeccCCCHHHHHHHH
Q 006003 448 AGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPA-PDTYPRRFISFCRVGTGLSDEELDAVV 509 (665)
Q Consensus 448 ~g~~~DlvVIG~~~G~g~r~g~~~sfllg~~d~~~-~~~~~~~~~~~~kVgsG~s~~~~~~l~ 509 (665)
...-.|.+..|..|| .|.+.-. |..+|-. + + .+|.++ |-.+..+.+.+.
T Consensus 319 ---~~~T~l~~I~~qVGR-TG~iTPv--A~lePV~l~----G--~tVsrA-TLHN~d~i~~~d 368 (671)
T 2owo_A 319 ---EQMTFVRDVEFQVGR-TGAITPV--ARLEPVHVA----G--VLVSNA-TLHNADEIERLG 368 (671)
T ss_dssp ---EEEEEEEEEEEEECT-TSBEEEE--EEEEEEEET----T--EEEEEE-ECCSHHHHHHHT
T ss_pred ---eEEEEEEEEEEecCC-CceeeeE--EEEEeEEEC----C--EEEEec-cCCCHHHHHHcC
Confidence 344466777777775 5555443 2222210 0 1 234444 667777777654
No 30
>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4}
Probab=96.84 E-value=0.0088 Score=63.85 Aligned_cols=141 Identities=13% Similarity=0.101 Sum_probs=86.7
Q ss_pred CceEEEEeeceeEEEEEEeCCEEEEEecCCCCCCc--chhh---------hHHHHHhhccccceeeeceEEEeeCCCCcc
Q 006003 245 KEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE--YGHA---------MSKIIEQNVLVDRCILDGEMLVWDTSLNRF 313 (665)
Q Consensus 245 ~~~~~E~K~DG~R~qih~~g~~v~~~SR~g~d~t~--~~p~---------l~~~~~~~~~~~~~ILDGElv~~d~~~~~~ 313 (665)
.++.+++|+||.-+.+...+|++.+.||++..... .+.. +.+.+ ..+...++.+-||++. +...-.
T Consensus 93 ~pv~V~eK~DGslv~~~~~~G~l~~~SKgs~~~~~a~~~~~~l~~~~~~~l~~~~-~~l~~~~~t~~fE~~~--pen~hV 169 (375)
T 2c5u_A 93 DVDYILTKEDGSLVSTYLDGDEILFKSKGSIKSEQALMANGILMNINHHRLRDRL-KELAEDGFTANFEFVA--PTNRIV 169 (375)
T ss_dssp GEEEEEEECCSEEEEEEEETTEEEEEETTBSSSHHHHHHHHHHHSGGGHHHHHHH-HHHHHTTEEEEEEEEC--TTSCSS
T ss_pred CCEEEEEecCCeEEEEEEECCEEEEEeCCCCCChHHHHHHHHHhhhcchHHHHHH-HHhcCCCCEEEEEEcC--CCCcee
Confidence 47999999999998877889999999999865431 1111 11111 1123578999999986 221112
Q ss_pred ccccchHHHHHHhhcCCCCCCceEEEEEEEEeeC-CccccCCCHHHHHHHHHhhcCCCCCcceecccCCCCCccccCCCC
Q 006003 314 AEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVG-DTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGE 392 (665)
Q Consensus 314 ~~F~~lq~~~~~~~~~~~~~~~~~~~vFDiL~ln-g~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~ 392 (665)
.++ .. ..+++||+-.-+ |+- +|+.++.++.+ .-.+...
T Consensus 170 l~Y----------------~~-~~L~L~~i~~n~tg~~---l~~~e~~~~a~-~g~~~V~-------------------- 208 (375)
T 2c5u_A 170 LAY----------------QE-MKIILLNVRENETGEY---ISYDDIYKDAT-LRPYLVE-------------------- 208 (375)
T ss_dssp SCC----------------SS-CEEEEEEEEETTTCCB---CCHHHHHHCTT-TGGGBCC--------------------
T ss_pred ccC----------------CC-CCEEEEEEEEcCCCcE---ecHHHHHHHHh-hCCCcCc--------------------
Confidence 222 12 469999998755 443 79999876654 2111100
Q ss_pred CccccccCCHHHHHHHHHHHHHcCCceEEeecCCCCCccCCCCCCeEEEccc
Q 006003 393 PCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPE 444 (665)
Q Consensus 393 ~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~~s~Y~~GkRs~~WlKiK~~ 444 (665)
++. -+.+++.+..+. ..+.||+|++..+ | .++|+|.+
T Consensus 209 -~~~---~~l~ell~~~~~--~~~~EGfVir~~~-----g----~~~K~Kt~ 245 (375)
T 2c5u_A 209 -RYE---IDSPKWIEEAKN--AENIEGYVAVMKD-----G----SHFKIKSD 245 (375)
T ss_dssp -EEE---CSSTHHHHHHHH--CSSCCEEEEEETT-----S----CEEEEECH
T ss_pred -eee---ccHHHHHHHHhh--CCCCceEEEEecC-----C----CEEEEecH
Confidence 111 112233332222 5788999999874 2 49999984
No 31
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=96.71 E-value=0.0032 Score=70.92 Aligned_cols=193 Identities=17% Similarity=0.201 Sum_probs=116.9
Q ss_pred ceEEEEeeceeEEEEEEeCCE-EEEEec----CCCCCCcchhhhHHHHHhhcc-------ccceeeeceEEEee------
Q 006003 246 EVVIECKFDGDRIQIHKNGSE-IHYFSR----SFLDHSEYGHAMSKIIEQNVL-------VDRCILDGEMLVWD------ 307 (665)
Q Consensus 246 ~~~~E~K~DG~R~qih~~g~~-v~~~SR----~g~d~t~~~p~l~~~~~~~~~-------~~~~ILDGElv~~d------ 307 (665)
.|++|+|+||.-+.+.+.+|. ++..|| .|+|+|.....+.. +...+. +..+.+=||++.--
T Consensus 117 ~~~~EpKiDGlavsL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~~~~~~~~p~~levRGEv~m~~~~F~~l 195 (615)
T 3sgi_A 117 HYLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIAD-VPERLTPGDDYPVPEVLEVRGEVFFRLDDFQAL 195 (615)
T ss_dssp CEEEEEEECSEEEEEEEETTEEEEEECCTTSSSCBCCHHHHHSCSS-SCSSCCCCSSCCCCSEEEEEEEEECCHHHHHHH
T ss_pred eEEEEEEecceEEEEEEECCEEEEEEecCCCcchhhHHHHHHhhcC-cchhhcCCcccCCCCeEEEEEEEEEeHHHHHHH
Confidence 699999999999999998776 689999 67888853221111 000111 34578899998631
Q ss_pred -CC---CCccccccchHHHH-HHhhcCCCC----CCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCCcceecc
Q 006003 308 -TS---LNRFAEFGSNQEIA-KAARDGLSS----DRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLV 378 (665)
Q Consensus 308 -~~---~~~~~~F~~lq~~~-~~~~~~~~~----~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~ 378 (665)
.. .+. .+|..-...+ ...+ ..+. .+++.|++|++...+|.. ..+..++.+.|.++-=+...
T Consensus 196 N~~~~~~g~-~~faNpRNaAAGsLR-qld~~ita~R~L~~f~y~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~------ 265 (615)
T 3sgi_A 196 NASLVEEGK-APFANPRNSAAGSLR-QKDPAVTARRRLRMICHGLGHVEGFR--PATLHQAYLALRAWGLPVSE------ 265 (615)
T ss_dssp HTTCSSSSS-CCCSSHHHHHHHHHT-CSSTTHHHHSCCEEEEEEEEEEESCC--CSBTTTHHHHHHHTTCCCCC------
T ss_pred HHHHHHcCC-CcCCChHHHHHHHHH-cCChhhHhhCcceEEEEeccccCCCC--CcCHHHHHHHHHHCCCCCCC------
Confidence 11 011 2454333322 1222 1122 368999999998776532 23567888889886322211
Q ss_pred cCCCCCccccCCCCCccccccCCHHHHHHHHHHHHH------cCCceEEeecCCCCCcc----CCCCCCe---EEEcccc
Q 006003 379 PDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIE------NRDEGIVLKDLGSKWEP----GDRSGKW---LKLKPEY 445 (665)
Q Consensus 379 p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~------~g~EGlV~K~~~s~Y~~----GkRs~~W---lKiK~~y 445 (665)
....+.+.+++.++++...+ -.-.|||+|--+-.+.. -.|.+.| +|+.++
T Consensus 266 ----------------~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~lG~t~k~PRWAiA~Kfpae- 328 (615)
T 3sgi_A 266 ----------------HTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPE- 328 (615)
T ss_dssp ----------------CCCCBSSHHHHHHHHTTTTTSGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECCCS-
T ss_pred ----------------CeEeeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCHHHHHHhCCCCCCCCceEEEcCCCc-
Confidence 12345788999998877633 33469999975544322 2367788 788886
Q ss_pred ccCCCcceEEEEEEEecCCCCCCccce
Q 006003 446 IRAGSDLDVLIIGGYYGSGRRGGEVAQ 472 (665)
Q Consensus 446 ~~~g~~~DlvVIG~~~G~g~r~g~~~s 472 (665)
..--.|.+..|..|| .|.+.-
T Consensus 329 -----e~~T~l~~I~~qVGR-TG~iTP 349 (615)
T 3sgi_A 329 -----EAQTKLLDIRVNVGR-TGRITP 349 (615)
T ss_dssp -----EEEEECCEECCCBCS-SSCBCC
T ss_pred -----eeEEEEEEEEEecCC-CceeeE
Confidence 333456666676664 455543
No 32
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=96.48 E-value=0.006 Score=69.53 Aligned_cols=192 Identities=18% Similarity=0.203 Sum_probs=114.3
Q ss_pred ceEEEEeeceeEEEEEEeCCEEEEEec----CCCCCCcchhhhHHHHHhhcc--ccceeeeceEEEeeCCCCc-------
Q 006003 246 EVVIECKFDGDRIQIHKNGSEIHYFSR----SFLDHSEYGHAMSKIIEQNVL--VDRCILDGEMLVWDTSLNR------- 312 (665)
Q Consensus 246 ~~~~E~K~DG~R~qih~~g~~v~~~SR----~g~d~t~~~p~l~~~~~~~~~--~~~~ILDGElv~~d~~~~~------- 312 (665)
.|++|+|+||.-+ +.+.+|. +..|| .|+|+|.....+.. +...+. +..+.+=||++.-...-.+
T Consensus 110 ~~~~e~KiDGlai-L~Ye~G~-~a~TRGDG~~GedvT~n~rtI~~-iP~~l~~~p~~levRGEv~m~~~~F~~lN~~~~~ 186 (667)
T 1dgs_A 110 LYTVEHKVDGLSV-LYYEEGV-WSTGSGDGEVGEEVTQNLLTIPT-IPRRLKGVPDRLEVRGEVYMPIEAFLRLNEELEE 186 (667)
T ss_dssp EEEEEECCSCEEE-EEEETTE-EEEEECSSSEEEBCTGGGTSSTT-SCSBCSSCCSEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred eEEEEEccceeEE-EEEcCCC-EEEeeCCCcchhhHHHHHhhhcC-CCcccCCCCCeEEEEEEEEEEHHHHHHHHHHHHh
Confidence 4999999999999 8888888 99999 57888864332221 001111 3447889999863110000
Q ss_pred --cccccchHHHH-HHhhcCCC----CCCce--EEEEEEEEe-eCCccccCCCHHHHHHHHHhhcCCCCCcceecccCCC
Q 006003 313 --FAEFGSNQEIA-KAARDGLS----SDRQL--CYFAFDVLY-VGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHG 382 (665)
Q Consensus 313 --~~~F~~lq~~~-~~~~~~~~----~~~~~--~~~vFDiL~-lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~ 382 (665)
-.+|..-...+ ...| ..+ ..+++ .|++|++++ .++.. ..+..++.+.|.++-=+....
T Consensus 187 ~g~~~faNpRNaaAGsLr-qld~~~~a~r~L~~~~~~y~~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~~--------- 254 (667)
T 1dgs_A 187 RGEKVFKNPRNAAAGSLR-QKDPRVTAKRGLRATFYALGLGLGLEESG--LKSQYELLLWLKEKGFPVEHC--------- 254 (667)
T ss_dssp HTCCCCSSHHHHHHHHHS-CSSHHHHHHSCCEEECCCBCTTTTTTSCC--CCBHHHHHHHHHHTTCCCCSC---------
T ss_pred cCCCcccChHHHHHHHHH-hcChhhhhhCCCCCEEEEEEeeccCCCCC--CCCHHHHHHHHHHCCCCCCcc---------
Confidence 01232211111 1111 111 13578 999999851 13221 357889999999874332211
Q ss_pred CCccccCCCCCccccccCCHHHHHHHHHHHHHcC------CceEEeecCCCCCcc----CCCCCCe---EEEccccccCC
Q 006003 383 LNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENR------DEGIVLKDLGSKWEP----GDRSGKW---LKLKPEYIRAG 449 (665)
Q Consensus 383 ~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g------~EGlV~K~~~s~Y~~----GkRs~~W---lKiK~~y~~~g 449 (665)
...+.+.+++.+++++.-+.+ -.|+|+|--+-.+.. -.|++.| +|+.++
T Consensus 255 -------------~~~~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~~~~q~~LG~t~k~PrWAiA~Kfpae----- 316 (667)
T 1dgs_A 255 -------------YEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKLDDLTLWGELGYTARAPRFALAYKFPAE----- 316 (667)
T ss_dssp -------------EEEEEHHHHHHHHHHHHHHTTTTSSSCCCEEEEEESBTHHHHHSCBCSSCBSSEEEEECCCC-----
T ss_pred -------------ceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHHHhCcccCCCCceEEecCCCc-----
Confidence 223567899999998887543 469999965544321 2366777 677775
Q ss_pred CcceEEEEEEEecCCCCCCccce
Q 006003 450 SDLDVLIIGGYYGSGRRGGEVAQ 472 (665)
Q Consensus 450 ~~~DlvVIG~~~G~g~r~g~~~s 472 (665)
...-.|.+..|..|| .|.+.-
T Consensus 317 -~~~T~l~~I~~qVGR-TG~iTP 337 (667)
T 1dgs_A 317 -EKETRLLDVVFQVGR-TGRVTP 337 (667)
T ss_dssp -CEEEEEEEEEEEECT-TSBEEE
T ss_pred -eEEEEEEEEEEecCC-Cceeee
Confidence 344567777777775 555543
No 33
>4e6n_A Metallophosphoesterase; RNA repair, RNA ligase, ligase-activating, protein binding; HET: AMP; 2.39A {Clostridium thermocellum} PDB: 4drf_A* 3ty9_A* 3ty8_A* 3ty5_A*
Probab=96.19 E-value=0.02 Score=59.61 Aligned_cols=182 Identities=16% Similarity=0.221 Sum_probs=109.9
Q ss_pred CHHHHHHHhcC---CceEEEEeeceeEEEEEEe--------------CCEEEEEecCCCCCCcchhhhH----HHHHh--
Q 006003 234 DAHAAWRKLHG---KEVVIECKFDGDRIQIHKN--------------GSEIHYFSRSFLDHSEYGHAMS----KIIEQ-- 290 (665)
Q Consensus 234 ~~~~~~~~~~~---~~~~~E~K~DG~R~qih~~--------------g~~v~~~SR~g~d~t~~~p~l~----~~~~~-- 290 (665)
.+.+++.-+.. ..+.+|+|.=|-|+.+.+. |..-.+|+|+|..+-+. +.+. +.+..
T Consensus 67 HP~eAF~yyr~~GV~~VVCEeKHMGSRAVv~vcRd~~~A~~rFGv~~g~~G~~yTRTGR~FF~d-~~l~~~ll~rlr~a~ 145 (427)
T 4e6n_A 67 HPIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGTAGICYTRTGRHFFDD-MQLEAELIDRVRKVL 145 (427)
T ss_dssp CHHHHHHHHHTTTCCEEEEEECCCSEEEEEEEESSHHHHHHHHCCCSSCSEEEECTTSCBSCSC-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCceEEeccccCCcceEEEEEcCHHHHHHhcCCCCCCcceeEecCCccccCC-chhHHHHHHHHHHHH
Confidence 35566655532 4799999999999987652 22456999999988632 2222 22211
Q ss_pred -------hccccceeeeceEEEeeCCCC-----ccccccch---------HHHHHHhh--------------cC------
Q 006003 291 -------NVLVDRCILDGEMLVWDTSLN-----RFAEFGSN---------QEIAKAAR--------------DG------ 329 (665)
Q Consensus 291 -------~~~~~~~ILDGElv~~d~~~~-----~~~~F~~l---------q~~~~~~~--------------~~------ 329 (665)
.+..+=+.||||++-|+-+.+ .+.|-|.- ..+..+.. .+
T Consensus 146 ~~aglw~~l~tdWl~LD~ELmPWSaKA~~Lir~QYA~VgaA~~a~l~~a~~~L~~A~~~~~~~~~~~~~~~~rg~dv~~L 225 (427)
T 4e6n_A 146 DKSGFWGDFNTDWVCLDCELMPWSAKAQKLLEEQYSAVGISGRVVLDEAVKLLKQASLNKTVSFDVSRQTSGKNADINEL 225 (427)
T ss_dssp HHHTHHHHTTCSEEEEEEEEECTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------CEECCHHHH
T ss_pred HhcchHHHhCCcEEEeecccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccccccccccCCCHHHH
Confidence 122344789999999974321 11111110 00000000 00
Q ss_pred ------------------------CCCCCceEEEEEEEEeeCCccccCCCHHHHHHHHHhhcCCCCCcceecccCCCCCc
Q 006003 330 ------------------------LSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNS 385 (665)
Q Consensus 330 ------------------------~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~ 385 (665)
.++-..+.+--|-||...|....+.|-.--.+.+..+....++.+ .+...+
T Consensus 226 l~r~~~r~~~~~~y~~AYr~YcWpv~gl~~~rlAPF~iLA~eg~~~~~~~H~WHm~~~~rl~~~d~~l~---~~T~~~-- 300 (427)
T 4e6n_A 226 LQRFTERSEMMQKYVEAYRKYCWPVNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSLI---MATNHI-- 300 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCSSGGGCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHSTTCTTB---CCCCEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcCceeecchhhhhcccccccCCChHHHHHHHHHHHhcCccce---eccccE--
Confidence 111235899999999999999999999988888888876554321 111000
Q ss_pred cccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecCCCC
Q 006003 386 HVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSK 428 (665)
Q Consensus 386 ~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~~s~ 428 (665)
.|.. ....+.++...++.+.-+.|.||+|+|..+..
T Consensus 301 ~VDl-------~d~~s~~~a~~WW~~lT~~GgEGMVVKP~~~~ 336 (427)
T 4e6n_A 301 LVDV-------TDAESVDKGIKWWEDLTASGGEGMVVKPYDFI 336 (427)
T ss_dssp EEET-------TCHHHHHHHHHHHHHHHHTTCCEEEEEESSSS
T ss_pred EeeC-------CCHHHHHHHHHHHHHHhcCCCceeEecchhhh
Confidence 0000 01134567778999999999999999987544
No 34
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=94.07 E-value=0.039 Score=62.87 Aligned_cols=87 Identities=25% Similarity=0.440 Sum_probs=74.6
Q ss_pred CCCCHHHHHHHHHHHHhhhhHHhHHHHHHHHHHhCCHHHHHHHHHHHHhhh--------ccCCcccccccccCc------
Q 006003 122 GGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDL--------KLGISEKSIFHEFHP------ 187 (665)
Q Consensus 122 ~~lTi~eV~~~Ld~la~~~~~~~k~~~l~~ll~~~t~~E~k~l~Riilkdl--------riG~~e~til~~~hp------ 187 (665)
+++...++-+++++|++.+++.+|..+|..+|+..++++.-|.++++++.| +.|++++++.+++..
T Consensus 19 ~~~~f~~~~~~~~~l~~t~~r~~k~~~l~~~~~~~~~~d~~~~~~ll~~~l~P~~~~~~~~gi~~~~L~k~~~~~~g~~~ 98 (621)
T 2hiv_A 19 SHMEFKVIAEYFDKLEKISSRLQLTALLADLLSKSDKTIIDKVVYIIQGKLWPDFLGYPELGIGEKFLIKAISIATNTDE 98 (621)
T ss_dssp --CBTHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCGGGHHHHHHHTTTCSSCGGGCCCCCCCCHHHHHHHHHHHHTCCH
T ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCchHHHHHHHHHhCCcCcccccccccCCCHHHHHHHHHHHHCcCH
Confidence 568889999999999999999999999999999999999999999998775 789999998776532
Q ss_pred -CHHHHHhhhCCHHHHHHHHhh
Q 006003 188 -DAEDLFNVTCDLKLVCEKLKD 208 (665)
Q Consensus 188 -~a~~~~~~~~dL~~v~~~l~~ 208 (665)
...+.|+...||+.++..+..
T Consensus 99 ~~~~~~~~~~GDlg~~a~~~~~ 120 (621)
T 2hiv_A 99 NSVENLYKTIGDLGEVARRLKS 120 (621)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHh
Confidence 345678889999999998875
No 35
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=89.55 E-value=0.25 Score=55.46 Aligned_cols=85 Identities=21% Similarity=0.310 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhhhhHHhHHHHHHHHHHhCCHHHHHHHHHHHHhhhc-------cCCcccccccccCc-------CHH
Q 006003 125 TIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLK-------LGISEKSIFHEFHP-------DAE 190 (665)
Q Consensus 125 Ti~eV~~~Ld~la~~~~~~~k~~~l~~ll~~~t~~E~k~l~Riilkdlr-------iG~~e~til~~~hp-------~a~ 190 (665)
...++-+++++|++.+++.+|..+|..+|+..++++..|.++++++.+- .|++++++.+++.. ...
T Consensus 2 ~f~~~a~~~~~l~~t~~r~~k~~~l~~~~~~~~~~d~~~~~~ll~~~l~P~~~~~~~gi~~~~L~~~~~~~~g~~~~~~~ 81 (561)
T 2cfm_A 2 RYLELAQLYQKLEKTTMKLIKTRLVADFLKKVPDDHLEFIPYLILGEVFPEWDERELGVGEKLLIKAVAMATGIDAKEIE 81 (561)
T ss_dssp BHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHSCGGGTTTHHHHHTTCSSCTTCCCCCCCCHHHHHHHHHHHHSCCHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCchHHHHHHHHHhCCCCccccccccCCCHHHHHHHHHHHHCcCHHHHH
Confidence 4567889999999999999999999999999999999999999987663 69999998876521 245
Q ss_pred HHHhhhCCHHHHHHHHhhh
Q 006003 191 DLFNVTCDLKLVCEKLKDR 209 (665)
Q Consensus 191 ~~~~~~~dL~~v~~~l~~~ 209 (665)
+.|+...||+.++..+...
T Consensus 82 ~~~~~~GDlg~~~~~~~~~ 100 (561)
T 2cfm_A 82 ESVKDTGDLGESIALAVKK 100 (561)
T ss_dssp HHHHHHSCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHhcc
Confidence 6788899999999988754
No 36
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=89.34 E-value=0.38 Score=53.94 Aligned_cols=85 Identities=18% Similarity=0.359 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHhhhhHHhHHHHHHHHHHhCCHH-HHHHHHHHHHhhhc-------cCCcccccccccC-----c--C
Q 006003 124 LTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQ-EMKWIIMIILKDLK-------LGISEKSIFHEFH-----P--D 188 (665)
Q Consensus 124 lTi~eV~~~Ld~la~~~~~~~k~~~l~~ll~~~t~~-E~k~l~Riilkdlr-------iG~~e~til~~~h-----p--~ 188 (665)
+...++-+++++|++.+++.+|..+|..+|+..+|+ +.-++++++++.+. +|++++++.+++. + .
T Consensus 4 m~~~~~a~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~~~~~~l~~g~~~p~~~~~~~gi~~~~l~~~~~~~~g~~~~~ 83 (558)
T 3gde_A 4 MLFAEFAEFCERLEKISSTLELTARIAAFLQKIEDERDLYDVVLFITGKVYPPWDERELGVGIGLLYEALENVSGVKRSE 83 (558)
T ss_dssp CBHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTCSSCTTSSCCCCCCHHHHHHHHHHHHCCCHHH
T ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCchhhHHHHHHHHcCCCCcccccceeCcChHHHHHHHHHHHCcCHHH
Confidence 678899999999999999999999999999999998 88999999987653 5999998866542 1 2
Q ss_pred HHHHHhhhCCHHHHHHHHhh
Q 006003 189 AEDLFNVTCDLKLVCEKLKD 208 (665)
Q Consensus 189 a~~~~~~~~dL~~v~~~l~~ 208 (665)
..+.|+...||+.++..+..
T Consensus 84 ~~~~~~~~GDlg~~a~~~~~ 103 (558)
T 3gde_A 84 IESMIREYGDLGLVAEQLIK 103 (558)
T ss_dssp HHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHh
Confidence 45678889999999988654
No 37
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=85.81 E-value=0.59 Score=53.76 Aligned_cols=86 Identities=14% Similarity=0.274 Sum_probs=71.8
Q ss_pred CCCCCHHHHHHHHHHHHhhhhHHhHHHHHHHHHHh---CCHHHHHHHHHHHHhhh-------ccCCcccccccccCc---
Q 006003 121 SGGLTIKELNDLLDRLASSENRAEKISVLSTLIKK---TNAQEMKWIIMIILKDL-------KLGISEKSIFHEFHP--- 187 (665)
Q Consensus 121 ~~~lTi~eV~~~Ld~la~~~~~~~k~~~l~~ll~~---~t~~E~k~l~Riilkdl-------riG~~e~til~~~hp--- 187 (665)
.+++...++-+++++|++.+++.+|..+|..+|+. ++|.+.-|.+.++++.| .+|++++++.+++..
T Consensus 53 ~~~~~~~~la~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~P~~~~~elgi~~~~L~k~i~~~~g 132 (688)
T 1x9n_A 53 GQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATG 132 (688)
T ss_dssp TSCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCCCCCCCHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcCChHHHHHHHHHHcCCCCccccccccCcChHHHHHHHHHHHC
Confidence 46789999999999999999999999999999998 89999999999999775 469999998775421
Q ss_pred ----CHHHHHhhhCCHHHHHHHH
Q 006003 188 ----DAEDLFNVTCDLKLVCEKL 206 (665)
Q Consensus 188 ----~a~~~~~~~~dL~~v~~~l 206 (665)
...+.|+...||+.||..+
T Consensus 133 ~~~~~~~~~~~~~GDlg~va~~~ 155 (688)
T 1x9n_A 133 RQLESVRAEAAEKGDVGLVAENS 155 (688)
T ss_dssp CCHHHHHHHHHHHTCHHHHTCC-
T ss_pred cCHHHHHHHHHhcCCHHHHHHHH
Confidence 2456688889999988654
No 38
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=65.38 E-value=7.5 Score=38.47 Aligned_cols=87 Identities=22% Similarity=0.310 Sum_probs=64.4
Q ss_pred CCCCCHHHHHHHHHHHHhhhhHHhHHHHHHHHHHhC-------------CHHHHHHHHHHHHhhh-----ccCCcccccc
Q 006003 121 SGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKT-------------NAQEMKWIIMIILKDL-----KLGISEKSIF 182 (665)
Q Consensus 121 ~~~lTi~eV~~~Ld~la~~~~~~~k~~~l~~ll~~~-------------t~~E~k~l~Riilkdl-----riG~~e~til 182 (665)
..++.-.++-+++++|++.+++.+|..+|..+|++. .+...-.++|.|+=+. ..|++++++.
T Consensus 11 ~~~~~F~~l~~~~e~Ie~ts~rl~k~~il~~f~~~~~~~~~~l~~~~~~~~~dly~~l~ll~P~~d~~r~~ygi~e~~L~ 90 (240)
T 4htp_A 11 ASHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKETMLA 90 (240)
T ss_dssp GGTSBHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCSHHHHHHHSGGGCCSSCCCCCCHHHHH
T ss_pred ccCCcHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccccccCcccCcchHHHHHHHhCccccccccccCCCHHHHH
Confidence 357889999999999999999999999999999873 3556778888888764 3899999987
Q ss_pred ccc----C--c---CHHHH---------HhhhCCHHHHHHHHh
Q 006003 183 HEF----H--P---DAEDL---------FNVTCDLKLVCEKLK 207 (665)
Q Consensus 183 ~~~----h--p---~a~~~---------~~~~~dL~~v~~~l~ 207 (665)
+++ + + ++..+ +.-..||+.||..+.
T Consensus 91 Kai~~~~g~~~~~~~~~~L~~wk~~~~~~~~~GDlg~va~~~~ 133 (240)
T 4htp_A 91 KLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVL 133 (240)
T ss_dssp HHHHHHTTCCTTSHHHHHHHTC----------CCHHHHHHHHH
T ss_pred HHHHHHHCCCcchHHHHHHHhccccccccccCCCHHHHHHHHH
Confidence 653 2 1 12223 344579999998875
No 39
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=44.05 E-value=25 Score=39.32 Aligned_cols=85 Identities=14% Similarity=0.237 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHHHHhhhhHHhHHHHHHHHHHhCCHH-----HHHHHHHHHHhhh---ccCCccccccccc----Cc--
Q 006003 122 GGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQ-----EMKWIIMIILKDL---KLGISEKSIFHEF----HP-- 187 (665)
Q Consensus 122 ~~lTi~eV~~~Ld~la~~~~~~~k~~~l~~ll~~~t~~-----E~k~l~Riilkdl---riG~~e~til~~~----hp-- 187 (665)
..++..++-+++++|++.+++.+|..+|+.++.+.++. +.--++|.|+=+. ..|++++++.+++ +-
T Consensus 5 ~d~~F~~f~~l~~~ie~~s~r~~k~~il~~~~~~~~~~~~~~~~~y~~~~~l~P~~~~~~~gi~ek~l~k~~~~~~g~~~ 84 (579)
T 3l2p_A 5 KDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNCNP 84 (579)
T ss_dssp GGGBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCC-------CCHHHHHHHHCTTTSCCCCSCCHHHHHHHHHHHHTSCH
T ss_pred ccCcHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCcccccchHHHHHHHhCCCccCcccCCcHHHHHHHHHHHHCcCH
Confidence 45788899999999999999999999999999998654 4566677776433 5899999988655 22
Q ss_pred -CHHHHHhhhCCHHHHHHHHh
Q 006003 188 -DAEDLFNVTCDLKLVCEKLK 207 (665)
Q Consensus 188 -~a~~~~~~~~dL~~v~~~l~ 207 (665)
++.+.| -..|+..+|..+.
T Consensus 85 ~~~~~~~-~~GD~~~~~~~~~ 104 (579)
T 3l2p_A 85 DDMARDL-EQGDVSETIRVFF 104 (579)
T ss_dssp HHHHHHG-GGSCHHHHHHHHH
T ss_pred HHHHHHH-HcCCHHHHHHHHH
Confidence 234445 3679998887764
No 40
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=28.23 E-value=96 Score=31.19 Aligned_cols=57 Identities=11% Similarity=0.221 Sum_probs=45.3
Q ss_pred cCCCHHHHHHHHHhhcCCCCCcceecccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecC
Q 006003 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL 425 (665)
Q Consensus 352 ~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ 425 (665)
..++..||+++++.++....+++.++. .....+..+..++-+.+.+.|..|+|+=.|
T Consensus 51 ~~Ls~~Er~~v~~~~~~~~~gr~pvia-----------------Gvg~~~t~~ai~la~~A~~~Gadavlv~~P 107 (294)
T 3b4u_A 51 CSVGSRERQAILSSFIAAGIAPSRIVT-----------------GVLVDSIEDAADQSAEALNAGARNILLAPP 107 (294)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCGGGEEE-----------------EECCSSHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEE-----------------eCCCccHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 467899999999999988777765432 223457788889999999999999999754
No 41
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=23.62 E-value=1.3e+02 Score=30.62 Aligned_cols=56 Identities=9% Similarity=0.245 Sum_probs=44.6
Q ss_pred cCCCHHHHHHHHHhhcCCCCCcceecccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecC
Q 006003 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL 425 (665)
Q Consensus 352 ~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ 425 (665)
..++..||+++++.++... +++.++. ...+.+..+..++-+.+.+.|..|+++=.|
T Consensus 56 ~~Lt~~Er~~v~~~~v~~~-grvpVia-----------------Gvg~~~t~~ai~la~~A~~~Gadavlv~~P 111 (313)
T 3dz1_A 56 PKLDAAEAEAVATRFIKRA-KSMQVIV-----------------GVSAPGFAAMRRLARLSMDAGAAGVMIAPP 111 (313)
T ss_dssp GGSCHHHHHHHHHHHHHHC-TTSEEEE-----------------ECCCSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred hhCCHHHHHHHHHHHHHHc-CCCcEEE-----------------ecCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4678999999999998877 7765542 223457788889999999999999999655
No 42
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=23.28 E-value=1.1e+02 Score=30.89 Aligned_cols=57 Identities=9% Similarity=0.022 Sum_probs=44.9
Q ss_pred cCCCHHHHHHHHHhhcCCCCCcceecccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecC
Q 006003 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL 425 (665)
Q Consensus 352 ~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ 425 (665)
..++..||+++++.++....+++.++. ...+.+..+..++-+.+.+.|..|+++=.|
T Consensus 62 ~~Ls~~Er~~v~~~~~~~~~gr~pvia-----------------Gvg~~~t~~ai~la~~A~~~Gadavlv~~P 118 (307)
T 3s5o_A 62 PFLTSSERLEVVSRVRQAMPKNRLLLA-----------------GSGCESTQATVEMTVSMAQVGADAAMVVTP 118 (307)
T ss_dssp GGSCHHHHHHHHHHHHHTSCTTSEEEE-----------------ECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHcCCCCcEEE-----------------ecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 467899999999999888777765432 123457788889999999999999999753
No 43
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=23.27 E-value=85 Score=32.02 Aligned_cols=57 Identities=16% Similarity=0.100 Sum_probs=44.4
Q ss_pred cCCCHHHHHHHHHhhcCCCCCcceecccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecC
Q 006003 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL 425 (665)
Q Consensus 352 ~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ 425 (665)
..++..||+++++.++....+++.++. ...+.+..+..++-+.+.+.|..|+++=.|
T Consensus 72 ~~Ls~~Er~~v~~~~v~~~~grvpVia-----------------Gvg~~~t~~ai~la~~A~~~Gadavlv~~P 128 (315)
T 3na8_A 72 AYLSDPEWDEVVDFTLKTVAHRVPTIV-----------------SVSDLTTAKTVRRAQFAESLGAEAVMVLPI 128 (315)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCBEE-----------------ECCCSSHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEE-----------------ecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 467899999999998877667654432 223457888899999999999999999643
No 44
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=21.54 E-value=1.2e+02 Score=30.74 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=44.9
Q ss_pred cCCCHHHHHHHHHhhcCCCCCcceecccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecC
Q 006003 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL 425 (665)
Q Consensus 352 ~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ 425 (665)
..++..||+++++.++....+++.++. .....+..+..++-+.+.+.|..|+|+=.|
T Consensus 71 ~~Ls~~Er~~v~~~~v~~~~grvpVia-----------------Gvg~~st~eai~la~~A~~~Gadavlv~~P 127 (314)
T 3qze_A 71 ATLDVEEHIQVIRRVVDQVKGRIPVIA-----------------GTGANSTREAVALTEAAKSGGADACLLVTP 127 (314)
T ss_dssp GGCCHHHHHHHHHHHHHHHTTSSCEEE-----------------ECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEE-----------------eCCCcCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 467899999999998887777765432 223457788889999999999999999754
No 45
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=21.51 E-value=1.2e+02 Score=30.38 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=46.2
Q ss_pred CccccCCCHHHHHHHHHhhcCCCCCcceecccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecC
Q 006003 348 DTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL 425 (665)
Q Consensus 348 g~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ 425 (665)
|+. ..++..||+++++.++....+++.++. ...+.+..+..++-+.+.+.|..|+++=.|
T Consensus 52 GE~-~~Ls~~Er~~v~~~~~~~~~grvpvia-----------------Gvg~~~t~~ai~la~~a~~~Gadavlv~~P 111 (297)
T 3flu_A 52 GES-ATLSVEEHTAVIEAVVKHVAKRVPVIA-----------------GTGANNTVEAIALSQAAEKAGADYTLSVVP 111 (297)
T ss_dssp TTG-GGSCHHHHHHHHHHHHHHHTTSSCEEE-----------------ECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred cCc-ccCCHHHHHHHHHHHHHHhCCCCcEEE-----------------eCCCcCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 443 567899999999998877667765432 223457888889999999999999999754
No 46
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=20.98 E-value=1.5e+02 Score=29.99 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=45.1
Q ss_pred cCCCHHHHHHHHHhhcCCCCCcceecccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecC
Q 006003 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL 425 (665)
Q Consensus 352 ~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ 425 (665)
..++..||+++++.++....+++.++. .....+..+..++-+.+.+.|..|+++=.|
T Consensus 64 ~~Ls~~Er~~v~~~~~~~~~grvpvia-----------------Gvg~~st~~ai~la~~A~~~Gadavlv~~P 120 (304)
T 3cpr_A 64 PTTTAAEKLELLKAVREEVGDRAKLIA-----------------GVGTNNTRTSVELAEAAASAGADGLLVVTP 120 (304)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTSEEEE-----------------ECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEe-----------------cCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 467899999999998876667665432 223457788889999999999999999875
No 47
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=20.80 E-value=1.4e+02 Score=29.98 Aligned_cols=57 Identities=14% Similarity=0.220 Sum_probs=44.6
Q ss_pred cCCCHHHHHHHHHhhcCCCCCcceecccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecC
Q 006003 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL 425 (665)
Q Consensus 352 ~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ 425 (665)
..++..||+++++.++....+++.++. .....+..+..++-+.+.+.|..|+|+=.|
T Consensus 48 ~~Ls~~Er~~v~~~~~~~~~grvpvia-----------------Gvg~~~t~~ai~la~~A~~~Gadavlv~~P 104 (294)
T 2ehh_A 48 PTLTFEEHEKVIEFAVKRAAGRIKVIA-----------------GTGGNATHEAVHLTAHAKEVGADGALVVVP 104 (294)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSEEEE-----------------ECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEE-----------------ecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 467899999999998876666665432 223457788888999999999999999864
No 48
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=20.66 E-value=1.2e+02 Score=30.35 Aligned_cols=57 Identities=12% Similarity=0.229 Sum_probs=44.7
Q ss_pred cCCCHHHHHHHHHhhcCCCCCcceecccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecC
Q 006003 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL 425 (665)
Q Consensus 352 ~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ 425 (665)
..++..||+++++.++....+++.++. ...+.+..+..++-+.+.+.|..|+|+=.|
T Consensus 49 ~~Ls~~Er~~v~~~~~~~~~gr~pvia-----------------Gvg~~~t~~ai~la~~a~~~Gadavlv~~P 105 (291)
T 3tak_A 49 STLSMEEHTQVIKEIIRVANKRIPIIA-----------------GTGANSTREAIELTKAAKDLGADAALLVTP 105 (291)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCEEE-----------------ECCCSSHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCeEEE-----------------eCCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 467899999999998877667665432 223457888889999999999999999754
No 49
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=20.20 E-value=1.2e+02 Score=30.63 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=45.3
Q ss_pred cCCCHHHHHHHHHhhcCCCCCcceecccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHcCCceEEeecC
Q 006003 352 IHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDL 425 (665)
Q Consensus 352 ~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ 425 (665)
..++..||+++++.++....+++.++. ...+.+..+..++-+.+.+.|..|+++=.|
T Consensus 63 ~~Lt~~Er~~v~~~~~~~~~grvpvia-----------------Gvg~~~t~~ai~la~~a~~~Gadavlv~~P 119 (304)
T 3l21_A 63 PTTTDGEKIELLRAVLEAVGDRARVIA-----------------GAGTYDTAHSIRLAKACAAEGAHGLLVVTP 119 (304)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSEEEE-----------------ECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCeEEE-----------------eCCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 467899999999999887777765542 223457888899999999999999999754
Done!