Your job contains 1 sequence.
>006006
MAALQRIVQSSGGSGYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNV
TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITDGRVSAVMR
GIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYAS
SVNEGTEGTFKAQRKRISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGID
KAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQGGITNSFCAPIETN
VKLGSLGRFDIQALAASGQIPPQTLAALHAELLGRPTGNLVTAVDQPALLQATLQGPKCI
PADHGVAFGQQLVKCQSNVPENLPQSIISVDDASTGFGVWASNSLGAVASTSNLGGLNPQ
NGNMLMDILHQQQQKQQNQQSQQQSTLSETSRSISVQPSCLVVPSRSSASFQAGNSPASV
NQSCSFNRGAVVDYSLLSSQSNNSSLNMGQISDGDIKTTAVITGYLAPGSLSPSASSCSV
TADNTSSQQVQNSNIAFRAARQVPGLVSNVGDIQGSYGAKSGEVFDLGSLRNHGFMGKGN
CIPSRLAVDEFESPMNNLNYGNIYLDNNANKVKEEPNLEFVENAKVGIPMYQQYAPNDLM
SVFTD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006006
(665 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp... 913 3.7e-97 2
TAIR|locus:2065398 - symbol:RR14 "response regulator 14" ... 808 2.2e-82 2
TAIR|locus:2040194 - symbol:RR12 "response regulator 12" ... 716 9.9e-71 1
TAIR|locus:2008585 - symbol:ARR11 "response regulator 11"... 681 4.2e-69 2
TAIR|locus:2093668 - symbol:RR1 "response regulator 1" sp... 590 2.2e-57 1
TAIR|locus:2116587 - symbol:RR10 "response regulator 10" ... 468 1.9e-44 1
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ... 437 3.6e-41 1
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re... 437 3.6e-41 1
TAIR|locus:2155954 - symbol:APRR4 "pseudo-response regula... 408 7.7e-38 1
TAIR|locus:2141020 - symbol:APRR2 species:3702 "Arabidops... 179 1.5e-22 2
TAIR|locus:2103247 - symbol:AT3G10760 "AT3G10760" species... 241 1.5e-18 1
TAIR|locus:2148348 - symbol:BOA "AT5G59570" species:3702 ... 232 1.7e-18 1
TAIR|locus:2175364 - symbol:AT5G05090 "AT5G05090" species... 225 9.8e-18 1
TAIR|locus:2058445 - symbol:MYBC1 "AT2G40970" species:370... 220 3.4e-17 1
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 241 5.0e-17 2
TAIR|locus:2167639 - symbol:GLK2 "AT5G44190" species:3702... 219 4.8e-15 2
TAIR|locus:2199342 - symbol:APRR6 "pseudo-response regula... 141 1.9e-13 2
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO... 199 2.1e-12 3
DICTYBASE|DDB_G0284331 - symbol:regA "response regulator ... 196 6.9e-12 1
UNIPROTKB|Q5Z5I4 - symbol:GLK1 "Probable transcription fa... 191 8.9e-12 1
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 194 1.0e-11 1
UNIPROTKB|Q4GZK8 - symbol:rr3 "Type A response regulator ... 159 1.2e-10 1
TAIR|locus:2148720 - symbol:PHL1 "AT5G29000" species:3702... 176 3.2e-10 1
TAIR|locus:2172394 - symbol:MYR1 "myb-related protein 1" ... 172 8.4e-10 1
TAIR|locus:2095933 - symbol:MYR2 species:3702 "Arabidopsi... 170 1.3e-09 1
UNIPROTKB|P14375 - symbol:zraR species:83333 "Escherichia... 169 2.2e-09 1
TIGR_CMR|GSU_3418 - symbol:GSU_3418 "sigma-54 dependent D... 163 1.2e-08 1
TIGR_CMR|GSU_2693 - symbol:GSU_2693 "response regulator" ... 140 1.4e-08 1
UNIPROTKB|Q3ADB1 - symbol:cheY1 "Chemotaxis protein CheY"... 138 2.2e-08 1
TIGR_CMR|CHY_1026 - symbol:CHY_1026 "chemotaxis protein C... 138 2.2e-08 1
TIGR_CMR|GSU_1320 - symbol:GSU_1320 "sigma-54 dependent D... 160 2.4e-08 1
TAIR|locus:2206415 - symbol:APL "ALTERED PHLOEM DEVELOPME... 158 2.4e-08 2
TIGR_CMR|GSU_1989 - symbol:GSU_1989 "sigma-54 dependent D... 158 3.7e-08 1
UNIPROTKB|A5U0E5 - symbol:phoP "Putative two component sy... 151 3.8e-08 1
UNIPROTKB|P71814 - symbol:phoP "Possible two component sy... 151 3.8e-08 1
UNIPROTKB|P0AE88 - symbol:cpxR "CpxR transcriptional dual... 149 4.4e-08 1
TIGR_CMR|CJE_1261 - symbol:CJE_1261 "chemotaxis protein C... 135 4.7e-08 1
TIGR_CMR|GSU_1117 - symbol:GSU_1117 "response regulator" ... 135 4.7e-08 1
TAIR|locus:2100880 - symbol:AT3G04450 species:3702 "Arabi... 156 6.0e-08 1
UNIPROTKB|Q4GZK5 - symbol:rr6 "Type A response regulator ... 134 6.0e-08 1
UNIPROTKB|Q3JZR1 - symbol:csrR "DNA-binding response regu... 146 9.6e-08 1
TAIR|locus:2026739 - symbol:AT1G69580 species:3702 "Arabi... 156 9.8e-08 2
UNIPROTKB|Q3ADA5 - symbol:cheY2 "Chemotaxis protein CheY"... 132 9.9e-08 1
UNIPROTKB|Q9KKK8 - symbol:VC_A1096 "Chemotaxis protein Ch... 132 9.9e-08 1
UNIPROTKB|Q9KQD5 - symbol:VC_2065 "Chemotaxis protein Che... 132 9.9e-08 1
TIGR_CMR|CHY_1032 - symbol:CHY_1032 "chemotaxis protein C... 132 9.9e-08 1
TIGR_CMR|VC_2065 - symbol:VC_2065 "chemotaxis protein Che... 132 9.9e-08 1
TIGR_CMR|VC_A1096 - symbol:VC_A1096 "chemotaxis protein C... 132 9.9e-08 1
TIGR_CMR|GSU_0008 - symbol:GSU_0008 "sensory box histidin... 155 1.0e-07 1
TIGR_CMR|CPS_1426 - symbol:CPS_1426 "transcriptional regu... 147 1.2e-07 1
TIGR_CMR|GSU_1495 - symbol:GSU_1495 "sigma-54 dependent D... 153 1.4e-07 1
TAIR|locus:2093726 - symbol:AT3G24120 species:3702 "Arabi... 149 1.4e-07 1
TAIR|locus:2087740 - symbol:AT3G12730 species:3702 "Arabi... 145 1.5e-07 1
TIGR_CMR|CHY_1018 - symbol:CHY_1018 "chemotaxis response ... 130 1.6e-07 1
TAIR|locus:2031210 - symbol:AT1G25550 species:3702 "Arabi... 139 1.7e-07 2
UNIPROTKB|P0AE67 - symbol:cheY species:83333 "Escherichia... 129 2.1e-07 1
UNIPROTKB|Q8EF67 - symbol:cheY "Chemotaxis signal transdu... 129 2.1e-07 1
TIGR_CMR|SO_2120 - symbol:SO_2120 "chemotaxis protein Che... 129 2.1e-07 1
TAIR|locus:2119425 - symbol:UNE16 "unfertilized embryo sa... 147 2.3e-07 1
UNIPROTKB|E1WEB4 - symbol:cpxR "Two-component response re... 143 2.5e-07 1
UNIPROTKB|P0A5Z6 - symbol:prrA "Transcriptional regulator... 143 2.5e-07 1
TAIR|locus:2063141 - symbol:AT2G40260 "AT2G40260" species... 149 3.1e-07 1
TIGR_CMR|SO_3209 - symbol:SO_3209 "chemotaxis protein Che... 127 3.4e-07 1
TIGR_CMR|SPO_1679 - symbol:SPO_1679 "DNA-binding response... 142 3.8e-07 1
TAIR|locus:2045761 - symbol:AT2G01060 species:3702 "Arabi... 144 4.6e-07 1
TIGR_CMR|ECH_1012 - symbol:ECH_1012 "DNA-binding response... 143 4.6e-07 1
TIGR_CMR|GSU_0372 - symbol:GSU_0372 "sigma-54 dependent D... 148 4.8e-07 1
TAIR|locus:2170199 - symbol:AT5G06800 species:3702 "Arabi... 146 5.5e-07 1
TIGR_CMR|CPS_4272 - symbol:CPS_4272 "sigma-54 dependent r... 147 6.2e-07 1
UNIPROTKB|Q48GG3 - symbol:cheY2 "Chemotaxis protein CheY"... 123 9.1e-07 1
TIGR_CMR|NSE_0512 - symbol:NSE_0512 "response regulator/G... 145 1.0e-06 1
TIGR_CMR|BA_1119 - symbol:BA_1119 "DNA-binding response r... 138 1.0e-06 1
TIGR_CMR|SPO_2629 - symbol:SPO_2629 "C4-dicarboxylate tra... 144 1.1e-06 1
UNIPROTKB|Q4KG39 - symbol:cheY "Chemotaxis protein CheY" ... 122 1.2e-06 1
TIGR_CMR|CPS_1520 - symbol:CPS_1520 "chemotaxis protein C... 122 1.2e-06 1
TAIR|locus:2063746 - symbol:AT2G03500 "AT2G03500" species... 144 1.2e-06 1
TAIR|locus:2157146 - symbol:AT5G45580 species:3702 "Arabi... 139 1.3e-06 1
TIGR_CMR|GSU_0403 - symbol:GSU_0403 "chemotaxis protein C... 121 1.5e-06 1
TAIR|locus:2051572 - symbol:AT2G06020 "AT2G06020" species... 140 1.5e-06 1
UNIPROTKB|P0AEC5 - symbol:barA species:83333 "Escherichia... 147 1.7e-06 1
TIGR_CMR|BA_3900 - symbol:BA_3900 "lantibiotic biosynthes... 135 1.7e-06 1
TAIR|locus:2139865 - symbol:PHR1 "phosphate starvation re... 142 1.8e-06 1
TIGR_CMR|BA_0585 - symbol:BA_0585 "DNA-binding response r... 135 1.9e-06 1
TIGR_CMR|APH_1099 - symbol:APH_1099 "DNA-binding response... 138 2.0e-06 1
TIGR_CMR|BA_0651 - symbol:BA_0651 "DNA-binding response r... 135 2.0e-06 1
TAIR|locus:2026863 - symbol:AT1G68670 species:3702 "Arabi... 140 2.2e-06 1
UNIPROTKB|Q9KS62 - symbol:VC_1398 "Chemotaxis protein Che... 119 2.5e-06 1
TIGR_CMR|VC_1398 - symbol:VC_1398 "chemotaxis protein Che... 119 2.5e-06 1
TIGR_CMR|CHY_1855 - symbol:CHY_1855 "sigma-54 dependent t... 141 2.7e-06 1
TAIR|locus:2089260 - symbol:AT3G13040 species:3702 "Arabi... 141 2.7e-06 1
TIGR_CMR|CPS_1750 - symbol:CPS_1750 "transcriptional regu... 135 2.8e-06 1
TIGR_CMR|DET_0135 - symbol:DET_0135 "DNA-binding response... 134 2.9e-06 1
TIGR_CMR|GSU_1231 - symbol:GSU_1231 "response regulator" ... 118 3.1e-06 1
TIGR_CMR|BA_5504 - symbol:BA_5504 "DNA-binding response r... 133 3.2e-06 1
TIGR_CMR|GSU_2581 - symbol:GSU_2581 "sigma-54 dependent t... 140 3.6e-06 1
TIGR_CMR|GSU_2915 - symbol:GSU_2915 "sigma-54 dependent D... 140 3.7e-06 1
TIGR_CMR|CPS_2786 - symbol:CPS_2786 "response regulator" ... 134 3.7e-06 1
TAIR|locus:2085984 - symbol:AT3G25790 species:3702 "Arabi... 138 3.8e-06 1
UNIPROTKB|P71403 - symbol:cheY "Chemotaxis protein CheY h... 117 4.0e-06 1
TIGR_CMR|GSU_2574 - symbol:GSU_2574 "response regulator" ... 138 4.0e-06 1
WARNING: Descriptions of 174 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2130095 [details] [associations]
symbol:RR2 "response regulator 2" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0010029 "regulation of seed germination" evidence=RCA]
[GO:0031537 "regulation of anthocyanin metabolic process"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
GermOnline:AT4G16110 Uniprot:Q9ZWJ9
Length = 664
Score = 913 (326.5 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
Identities = 204/362 (56%), Positives = 255/362 (70%)
Query: 21 AADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCF 80
AA + D FPA LRVLVVDDD TCL ILE+ML CLY VT C++A AL +LR+ K F
Sbjct: 15 AAGGSNSDPFPANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGF 74
Query: 81 DVVLSDVHMPDMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREE 137
D+V+SDVHMPDMDGFKLLEH+GLEMDLPVI D S V++G+ HGA DYLIKP+R E
Sbjct: 75 DIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIE 134
Query: 138 ELKNIWQHVVRKRWNE-NKEHENSGSLEET----DHHKRGSDEIEY-ASSVNEGTEGTFK 191
LKNIWQHVVRK+ NE N + GS+E+T D ++ ++ + +SSVNEG G +
Sbjct: 135 ALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDADNNSSSVNEGN-G--R 191
Query: 192 AQRKRISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELM 251
+ RKR + +D G+ + +D S+ KKPRVVWSVELHQQFV+AVNQLG+DKAVPK+ILE+M
Sbjct: 192 SSRKRKEEEVDDQGD-DKEDSSSLKKPRVVWSVELHQQFVAAVNQLGVDKAVPKKILEMM 250
Query: 252 NVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQ-QGGITNSFCAPIETNV-KLGSLGRF 309
NVPGLTRENVASHLQ K+R+YL+RL GVSQ QG + +SF + + L SL F
Sbjct: 251 NVPGLTRENVASHLQ-----KYRIYLRRLGGVSQHQGNMNHSFMTGQDQSFGPLSSLNGF 305
Query: 310 DIQALAASGQIPPQTLAALHAELLGRPT----GNLVTA-VDQPALLQATLQGPKCIPAD- 363
D+Q+LA +GQ+PPQ+LA L A LGRPT G V+ VDQ ++ + PK D
Sbjct: 306 DLQSLAVTGQLPPQSLAQLQAAGLGRPTLAKPGMSVSPLVDQRSIFN--FENPKIRFGDG 363
Query: 364 HG 365
HG
Sbjct: 364 HG 365
Score = 72 (30.4 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 612 ESPMNNLNYGN-IYLDNNANKVKEEPNLEFVENAKVGIPMYQQYAPNDLMSVF 663
+SP NL + N +++D + +VK E E V ++QY DLMS F
Sbjct: 587 QSPSRNLYHLNHVFMDGGSVRVKSERVAETVTCPPANTLFHEQYNQEDLMSAF 639
>TAIR|locus:2065398 [details] [associations]
symbol:RR14 "response regulator 14" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG0745 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AC006069
EMBL:AY099726 EMBL:AY128887 EMBL:AY088149 IPI:IPI00545640
PIR:G84428 RefSeq:NP_178285.1 UniGene:At.42470
ProteinModelPortal:Q8L9Y3 SMR:Q8L9Y3 IntAct:Q8L9Y3 STRING:Q8L9Y3
EnsemblPlants:AT2G01760.1 GeneID:814707 KEGG:ath:AT2G01760
GeneFarm:3930 TAIR:At2g01760 HOGENOM:HOG000034077 InParanoid:Q8L9Y3
OMA:SWILERS PhylomeDB:Q8L9Y3 ProtClustDB:CLSN2913129
Genevestigator:Q8L9Y3 GermOnline:AT2G01760 Uniprot:Q8L9Y3
Length = 382
Score = 808 (289.5 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 187/323 (57%), Positives = 220/323 (68%)
Query: 26 VPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85
+ DQFP+GLR+LVVDDD +CL ILE+ML R +Y VT CSQA VAL ILRERK FD+VLS
Sbjct: 3 INDQFPSGLRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLS 62
Query: 86 DVHMPDMDGFKLLEHIGL-EMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKN 141
DVHMP M+G+ LL+ +GL EMDLPVI DGR + VM GI HGACDYLIKPIR EELKN
Sbjct: 63 DVHMPGMNGYNLLQQVGLLEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKN 122
Query: 142 IWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKE 201
IWQHVVR++ KE +S +LE D+ GS E S E K + K+ K
Sbjct: 123 IWQHVVRRKCVMKKELRSSQALE--DNKNSGSLETVVVSVSECSEESLMKCRNKKKKKKR 180
Query: 202 E-DDGELESD---DPSTTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLT 257
D + E D DP +KK RVVWS+ELHQQFV+AVN+LGIDKAVPKRILELMNVPGL+
Sbjct: 181 SVDRDDNEDDLLLDPGNSKKSRVVWSIELHQQFVNAVNKLGIDKAVPKRILELMNVPGLS 240
Query: 258 RENVASHLQEINLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFD-IQALAA 316
RENVASHLQ KFRLYLKRL+G + Q + S K R++ IQAL +
Sbjct: 241 RENVASHLQ-----KFRLYLKRLSGEASQSNDSES--------TK-----RYENIQALVS 282
Query: 317 SGQIPPQTLAALHAELLGRPTGN 339
SGQ+ PQTLAAL G+P N
Sbjct: 283 SGQLHPQTLAAL----FGQPIDN 301
Score = 37 (18.1 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 394 STGFGVWASN-SLG 406
S FGVW N +LG
Sbjct: 304 SASFGVWIPNDNLG 317
>TAIR|locus:2040194 [details] [associations]
symbol:RR12 "response regulator 12" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=IGI;TAS]
[GO:0009735 "response to cytokinin stimulus" evidence=IGI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0010380
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0080022
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0048367
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG2204 HOGENOM:HOG000238840
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:BE522295
IPI:IPI00541861 IPI:IPI01019479 RefSeq:NP_180090.6 UniGene:At.19775
ProteinModelPortal:P62598 SMR:P62598 IntAct:P62598 STRING:P62598
GeneID:817056 KEGG:ath:AT2G25180 GeneFarm:3926 TAIR:At2g25180
InParanoid:P62598 OMA:QQAIMAN ArrayExpress:P62598
Genevestigator:P62598 GermOnline:AT2G25180 Uniprot:P62598
Length = 596
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 154/269 (57%), Positives = 194/269 (72%)
Query: 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87
DQFP G+RVL VDDD TCL+ILE +LR C Y+VTT +QA AL++LRE K FD+V+SDV
Sbjct: 11 DQFPVGMRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDV 70
Query: 88 HMPDMDGFKLLEHIGLEMDLPVITDGRVSA---VMRGIRHGACDYLIKPIREEELKNIWQ 144
MPDMDGFKLLE +GLEMDLPVI S VM+G+ HGACDYL+KP+R EELKNIWQ
Sbjct: 71 DMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQ 130
Query: 145 HVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDD 204
HVVR R+++N+ N+G + G++ + S N G +G K RK ++ED+
Sbjct: 131 HVVRSRFDKNRGSNNNGDKRDGS----GNEGVGN-SDQNNG-KGNRK--RKDQYNEDEDE 182
Query: 205 GELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASH 264
++DD KK RVVW+VELH++FV+AVNQLG +KA+PK+IL+LMNV LTRENVASH
Sbjct: 183 DRDDNDDSCAQKKQRVVWTVELHKKFVAAVNQLGYEKAMPKKILDLMNVEKLTRENVASH 242
Query: 265 LQEINLQKFRLYLKRLNGVSQQGGI-TNS 292
LQ KFRLYLKR++GV+ Q I NS
Sbjct: 243 LQ-----KFRLYLKRISGVANQQAIMANS 266
>TAIR|locus:2008585 [details] [associations]
symbol:ARR11 "response regulator 11" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG0745 InterPro:IPR017053
PIRSF:PIRSF036392 EMBL:AJ005194 EMBL:AC008113 EMBL:BT008768
EMBL:AB041532 IPI:IPI00521272 PIR:C96700 PIR:T52034 PIR:T52074
RefSeq:NP_176938.1 UniGene:At.121 ProteinModelPortal:Q9FXD6
SMR:Q9FXD6 IntAct:Q9FXD6 STRING:Q9FXD6 EnsemblPlants:AT1G67710.1
GeneID:843096 KEGG:ath:AT1G67710 GeneFarm:3922 TAIR:At1g67710
HOGENOM:HOG000116485 InParanoid:Q9FXD6 OMA:WITRYDE PhylomeDB:Q9FXD6
ProtClustDB:CLSN2914476 Genevestigator:Q9FXD6 GermOnline:AT1G67710
Uniprot:Q9FXD6
Length = 521
Score = 681 (244.8 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
Identities = 155/289 (53%), Positives = 196/289 (67%)
Query: 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP 90
P GLRVLVVDDD T L+ILE+ML++C Y VTTC A AL +LRERK +D+V+SDV+MP
Sbjct: 8 PVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMP 67
Query: 91 DMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147
DMDGFKLLEH+GLE+DLPVI DG S VM+G++HGACDYL+KPIR +ELK IWQHV+
Sbjct: 68 DMDGFKLLEHVGLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVL 127
Query: 148 RKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGEL 207
RK+ E ++ E G D R DE + G + +F +RK +++ +
Sbjct: 128 RKKLQEVRDIEGCGYEGGADWITR-YDEAHFLGG---GEDVSFGKKRKDFDFEKKLLQD- 182
Query: 208 ESD-DPSTTKKPRVVWSVELHQQFVSAVNQLGID-KAVPKRILELMNVPGLTRENVASHL 265
ESD S++KK RVVWS ELH +FV+AVNQ+G D KA PK+IL+LMNVP LTRENVASHL
Sbjct: 183 ESDPSSSSSKKARVVWSFELHHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHL 242
Query: 266 QEINLQKFRLYLKRLNGVSQ----QGGITNSFCAPIETNVKLG--SLGR 308
Q K+RLYL RL + GG+ N+ +P + V G S GR
Sbjct: 243 Q-----KYRLYLSRLEKGKELKCYSGGVKNADSSPKDVEVNSGYQSPGR 286
Score = 38 (18.4 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 464 PSRSSASFQAGNS 476
P RSS F GNS
Sbjct: 284 PGRSSYVFSGGNS 296
Score = 37 (18.1 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 12/64 (18%), Positives = 28/64 (43%)
Query: 336 PTGNLVTAVDQPALLQATLQGPKCIPADHGVAFGQQLVKCQSNVP----ENLPQSIISVD 391
P+ + A P+L++ ++ P PA + + Q +P ++L S + +
Sbjct: 374 PSQSSYVANSAPSLMEEEMKPPYETPAGGSSVNADEFLMPQDKIPTVTLQDLDPSAMKLQ 433
Query: 392 DAST 395
+ +T
Sbjct: 434 EFNT 437
>TAIR|locus:2093668 [details] [associations]
symbol:RR1 "response regulator 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
"regulation of seed germination" evidence=RCA] [GO:0010043
"response to zinc ion" evidence=RCA] [GO:0016558 "protein import
into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
shoot system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
Uniprot:Q940D0
Length = 690
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 132/242 (54%), Positives = 165/242 (68%)
Query: 112 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKR 171
D S V++G+ HGA DYLIKP+R E LKNIWQHVVRKR +E E+SGS+EET ++
Sbjct: 118 DDSKSVVLKGVTHGAVDYLIKPVRMEALKNIWQHVVRKRRSEWSVPEHSGSIEETGERQQ 177
Query: 172 --------------GSDEIE-YASSVNEGTEGTFKAQRKRISAKEEDDGELESDDPSTTK 216
G D ++ +SSVNEG + RKR + E+ G+ + +D S K
Sbjct: 178 QQHRGGGGGAAVSGGEDAVDDNSSSVNEGNNWR-SSSRKRKDEEGEEQGDDKDEDASNLK 236
Query: 217 KPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLY 276
KPRVVWSVELHQQFV+AVNQLG++KAVPK+ILELMNVPGLTRENVASHLQ K+R+Y
Sbjct: 237 KPRVVWSVELHQQFVAAVNQLGVEKAVPKKILELMNVPGLTRENVASHLQ-----KYRIY 291
Query: 277 LKRLNGVSQ-QGGITNSFCAPIETNV-KLGSLGRFDIQALAASGQIPPQTLAALHAELLG 334
L+RL GVSQ QG + NSF + + L +L FD+QALA +GQ+P Q+LA L A LG
Sbjct: 292 LRRLGGVSQHQGNLNNSFMTGQDASFGPLSTLNGFDLQALAVTGQLPAQSLAQLQAAGLG 351
Query: 335 RP 336
RP
Sbjct: 352 RP 353
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 106/199 (53%), Positives = 138/199 (69%)
Query: 26 VPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85
V + FP+GLRVLVVDDD TCL ILE+MLR CLY VT C++A +AL +LR+ K FD+V+S
Sbjct: 29 VVEMFPSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVIS 88
Query: 86 DVHMPDMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNI 142
DVHMPDMDGFKLLEH+GLEMDLPVI D S V++G+ HGA DYLIKP+R E LKNI
Sbjct: 89 DVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNI 148
Query: 143 WQHVVRKRWNENKEHENSGSLEET-----DHHKRGSDEIEYAS---SVNEGTEGTFKAQR 194
WQHVVRKR +E E+SGS+EET H+ G + +V++ + +
Sbjct: 149 WQHVVRKRRSEWSVPEHSGSIEETGERQQQQHRGGGGGAAVSGGEDAVDDNSSSVNEGNN 208
Query: 195 KRISAKE--EDDGELESDD 211
R S+++ +++GE + DD
Sbjct: 209 WRSSSRKRKDEEGEEQGDD 227
>TAIR|locus:2116587 [details] [associations]
symbol:RR10 "response regulator 10" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0010380 "regulation of chlorophyll biosynthetic
process" evidence=IGI] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=IGI;RCA] [GO:0048367 "shoot system
development" evidence=IGI] [GO:0080022 "primary root development"
evidence=IGI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 EMBL:AJ005195
EMBL:AL021636 EMBL:AL161580 EMBL:BT003158 IPI:IPI00544491
PIR:T04653 RefSeq:NP_194920.1 UniGene:At.122 PDB:1IRZ PDBsum:1IRZ
ProteinModelPortal:O49397 SMR:O49397 IntAct:O49397 STRING:O49397
PRIDE:O49397 EnsemblPlants:AT4G31920.1 GeneID:829322
KEGG:ath:AT4G31920 GeneFarm:2450 TAIR:At4g31920 eggNOG:COG2204
HOGENOM:HOG000238840 InParanoid:O49397 OMA:THELHNK PhylomeDB:O49397
ProtClustDB:CLSN2685991 EvolutionaryTrace:O49397
Genevestigator:O49397 GermOnline:AT4G31920 GO:GO:0031537
InterPro:IPR017053 PIRSF:PIRSF036392 Uniprot:O49397
Length = 552
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 96/178 (53%), Positives = 126/178 (70%)
Query: 23 DVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDV 82
++ V DQFP G+RVL VDDD TCLRIL+ +L+RC Y+VTT +QA AL++LRE K FD+
Sbjct: 6 EIEVLDQFPVGMRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDL 65
Query: 83 VLSDVHMPDMDGFKLLEHIGLEMDLPVITDGRVSA---VMRGIRHGACDYLIKPIREEEL 139
V+SDV MPDMDGFKLLE +GLEMDLPVI S VM+G++HGACDYL+KP+R EEL
Sbjct: 66 VISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEEL 125
Query: 140 KNIWQHVVRK-RWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFK-AQRK 195
KNIWQHVVRK + +NK + ++GS +++ ++ E G + AQ+K
Sbjct: 126 KNIWQHVVRKSKLKKNKSNVSNGSGNCDKANRKRKEQYEEEEEEERGNDNDDPTAQKK 183
Score = 254 (94.5 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 168 HHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGEL---ESDDPSTTKKPRVVWSV 224
H R S + S+V+ G+ KA RKR EE++ E ++DDP+ KKPRV+W+
Sbjct: 131 HVVRKSKLKKNKSNVSNGSGNCDKANRKRKEQYEEEEEEERGNDNDDPTAQKKPRVLWTH 190
Query: 225 ELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLN 281
ELH +F++AV+ LG+++AVPK+IL+LMNV LTRENVASHLQ KFR+ LK+++
Sbjct: 191 ELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ-----KFRVALKKVS 242
>UNIPROTKB|Q7Y0W3 [details] [associations]
symbol:Q7Y0W3 "Two-component response regulator EHD1"
species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0048576 "positive regulation of short-day
photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
Length = 341
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 99/272 (36%), Positives = 153/272 (56%)
Query: 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHM 89
+P GLRVLV+DDD + L ++E +L +C Y VTT A+ + + D+V+SD
Sbjct: 7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFF 66
Query: 90 PDMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146
P DG +L+ + + +P + + G + VM+ + +GA D+L+KP+R EEL NIWQH+
Sbjct: 67 PTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126
Query: 147 VRKRWNENKEHENSGSLEETDHHKR--GSDEIEYASSVNEGTEGTFKAQRKRISAKEED- 203
RK+ ++K + G+LE+ H A++ + TE + + +
Sbjct: 127 FRKQMQDHKNNNMVGNLEKPGHPPSILAMARATPATTRSTATEASLAPLENEVRDDMVNY 186
Query: 204 DGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVAS 263
+GE+ D K R+ W+ +LH+QF++AVN LG DKAVPK+IL +M V LTRE VAS
Sbjct: 187 NGEIT--DIRDLGKSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVAS 244
Query: 264 HLQEINLQKFRLYLKRLNGVSQQGGITNSFCA 295
HLQ K+R+ LK+ + + G T S A
Sbjct: 245 HLQ-----KYRMQLKKSIPTTSKHGATLSSTA 271
>UNIPROTKB|Q7Y0W5 [details] [associations]
symbol:EHD1 "Two-component response regulator EHD1"
species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
Length = 341
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 99/272 (36%), Positives = 153/272 (56%)
Query: 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHM 89
+P GLRVLV+DDD + L ++E +L +C Y VTT A+ + + D+V+SD
Sbjct: 7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFF 66
Query: 90 PDMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146
P DG +L+ + + +P + + G + VM+ + +GA D+L+KP+R EEL NIWQH+
Sbjct: 67 PTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126
Query: 147 VRKRWNENKEHENSGSLEETDHHKR--GSDEIEYASSVNEGTEGTFKAQRKRISAKEED- 203
RK+ ++K + G+LE+ H A++ + TE + + +
Sbjct: 127 FRKQMQDHKNNNMVGNLEKPGHPPSILAMARATPATTRSTATEASLAPLENEVRDDMVNY 186
Query: 204 DGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVAS 263
+GE+ D K R+ W+ +LH+QF++AVN LG DKAVPK+IL +M V LTRE VAS
Sbjct: 187 NGEIT--DIRDLGKSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVAS 244
Query: 264 HLQEINLQKFRLYLKRLNGVSQQGGITNSFCA 295
HLQ K+R+ LK+ + + G T S A
Sbjct: 245 HLQ-----KYRMQLKKSIPTTSKHGATLSSTA 271
>TAIR|locus:2155954 [details] [associations]
symbol:APRR4 "pseudo-response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AB016872 IPI:IPI00535768 RefSeq:NP_199735.1
UniGene:At.55447 ProteinModelPortal:Q9FJ16 SMR:Q9FJ16
EnsemblPlants:AT5G49240.1 GeneID:834984 KEGG:ath:AT5G49240
GeneFarm:4344 TAIR:At5g49240 eggNOG:NOG265546 HOGENOM:HOG000029456
InParanoid:Q9FJ16 KO:K14491 OMA:SEIGSEM PhylomeDB:Q9FJ16
ProtClustDB:CLSN2916474 Genevestigator:Q9FJ16 GermOnline:AT5G49240
Uniprot:Q9FJ16
Length = 292
Score = 408 (148.7 bits), Expect = 7.7e-38, P = 7.7e-38
Identities = 98/245 (40%), Positives = 149/245 (60%)
Query: 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHM 89
FP GLRVLV D+D + L ILE+ L++ Y VT C++ A+ LR + FD+ + V+
Sbjct: 38 FPEGLRVLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQVNN 97
Query: 90 PDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146
+ D F+ L IG EMDLP+I D V +V + + +GA DYLIKPIR E+L+ +++H+
Sbjct: 98 AEGDIFRFLSEIGSEMDLPIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHL 157
Query: 147 VRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGT-EGTFKAQRKR-ISAKEEDD 204
V+K + +G E+ K +SSV + T K++R + A+ ++
Sbjct: 158 VKKM--RERRSVVTGEAEKAAGEK--------SSSVGDSTIRNPNKSKRSSCLEAEVNEE 207
Query: 205 GELESDD---PSTTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENV 261
+ +D S+ KK RVVW ELHQ F++AV+ LG+++AVPK+IL++M V ++RENV
Sbjct: 208 DRHDHNDRACASSAKKRRVVWDEELHQNFLNAVDFLGLERAVPKKILDVMKVDYISRENV 267
Query: 262 ASHLQ 266
ASHLQ
Sbjct: 268 ASHLQ 272
>TAIR|locus:2141020 [details] [associations]
symbol:APRR2 species:3702 "Arabidopsis thaliana"
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA;ISS] [GO:0000160 "phosphorelay signal transduction
system" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=RCA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AL021889
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB041531
EMBL:AF385725 EMBL:AY143963 IPI:IPI00524902 IPI:IPI00542892
PIR:T05088 RefSeq:NP_001078405.1 RefSeq:NP_001154250.1
RefSeq:NP_001190759.1 RefSeq:NP_567548.1 RefSeq:NP_849403.1
RefSeq:NP_849404.2 UniGene:At.25394 ProteinModelPortal:Q6LA43
SMR:Q6LA43 IntAct:Q6LA43 STRING:Q6LA43 EnsemblPlants:AT4G18020.1
EnsemblPlants:AT4G18020.2 EnsemblPlants:AT4G18020.3
EnsemblPlants:AT4G18020.6 GeneID:827527 KEGG:ath:AT4G18020
GeneFarm:4314 TAIR:At4g18020 eggNOG:NOG268152 HOGENOM:HOG000005909
InParanoid:Q6LA43 OMA:TIMISTD PhylomeDB:Q6LA43
ProtClustDB:CLSN2689492 Genevestigator:Q6LA43 GermOnline:AT4G18020
Uniprot:Q6LA43
Length = 535
Score = 179 (68.1 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 46/118 (38%), Positives = 66/118 (55%)
Query: 164 EETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGE-LESDDPSTTKKPRVVW 222
E D K +E E ++E T+ +K K + +++ + T + +V W
Sbjct: 245 ERGDSEKE--EEGETGDLISEKTDSV-DIHKKEDETKPINKSSGIKNVSGNKTSRKKVDW 301
Query: 223 SVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 280
+ ELH++FV AV QLG+D+A+P RILELM V LTR NVASHLQ KFR + K +
Sbjct: 302 TPELHKKFVQAVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQ-----KFRQHRKNI 354
Score = 163 (62.4 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 48/143 (33%), Positives = 74/143 (51%)
Query: 21 AADVAVPDQFPAGLRVLVV------DDDITCLRILEQMLRRCLYNVTTCSQAAVALDILR 74
A D++ + FP GL+VL++ D D + L Y VTT + AL +
Sbjct: 5 ANDLSKWENFPKGLKVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVV 64
Query: 75 ERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYL 130
+ F + + +V+M + + FK LE + LP I TD ++ M+ I GA ++L
Sbjct: 65 KNPESFHIAIVEVNMSAESESFKFLE--AAKDVLPTIMISTDHCITTTMKCIALGAVEFL 122
Query: 131 IKPIREEELKNIWQHVVRKRWNE 153
KP+ E+LKNIWQHVV K +N+
Sbjct: 123 QKPLSPEKLKNIWQHVVHKAFND 145
>TAIR|locus:2103247 [details] [associations]
symbol:AT3G10760 "AT3G10760" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
EMBL:AC011708 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000238691 ProtClustDB:CLSN2716677
IPI:IPI00530545 RefSeq:NP_187687.1 UniGene:At.39869
ProteinModelPortal:Q9SG82 SMR:Q9SG82 PRIDE:Q9SG82
EnsemblPlants:AT3G10760.1 GeneID:820245 KEGG:ath:AT3G10760
TAIR:At3g10760 eggNOG:NOG312708 InParanoid:Q9SG82 OMA:FARWEEE
PhylomeDB:Q9SG82 Genevestigator:Q9SG82 Uniprot:Q9SG82
Length = 335
Score = 241 (89.9 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 57/133 (42%), Positives = 78/133 (58%)
Query: 157 HENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGELESDDPSTT- 215
H N S + HH + + ++ A+ SA + G D+P+ T
Sbjct: 45 HGNGNSNQPHHHHHHQTTPPTPSQLQLPSSQANSSAEFAADSA-DLGSGGAAGDEPARTL 103
Query: 216 KKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRL 275
K+PR+VW+ +LH++FV AV LGI AVPK I++LM+V GLTRENVASHLQ K+RL
Sbjct: 104 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQ-----KYRL 158
Query: 276 YLKRLNGVSQQGG 288
YLKR+ G+S GG
Sbjct: 159 YLKRMQGLSSGGG 171
>TAIR|locus:2148348 [details] [associations]
symbol:BOA "AT5G59570" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0009909 "regulation of flower development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GO:GO:0003677 GO:GO:0007623 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AB025604
GO:GO:0009909 HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT026065 EMBL:AK117348
EMBL:AB206577 IPI:IPI00538187 RefSeq:NP_200765.1 UniGene:At.29219
ProteinModelPortal:Q9LTH4 SMR:Q9LTH4 STRING:Q9LTH4
EnsemblPlants:AT5G59570.1 GeneID:836076 KEGG:ath:AT5G59570
TAIR:At5g59570 InParanoid:Q9LTH4 OMA:ERSRTIH PhylomeDB:Q9LTH4
ProtClustDB:CLSN2685121 Genevestigator:Q9LTH4 Uniprot:Q9LTH4
Length = 298
Score = 232 (86.7 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 48/89 (53%), Positives = 62/89 (69%)
Query: 198 SAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLT 257
S EE D E T+K+PR+VW+ +LH++FV V LGI AVPK I++LMNV GLT
Sbjct: 122 STAEEGDSGPEDASGKTSKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLT 181
Query: 258 RENVASHLQEINLQKFRLYLKRLNGVSQQ 286
RENVASHLQ K+RLYLKR+ G++ +
Sbjct: 182 RENVASHLQ-----KYRLYLKRIQGLTTE 205
>TAIR|locus:2175364 [details] [associations]
symbol:AT5G05090 "AT5G05090" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002688
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AB005245 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY093188
EMBL:BT006289 IPI:IPI00523871 RefSeq:NP_196128.1 UniGene:At.33034
ProteinModelPortal:Q9FF65 SMR:Q9FF65 PRIDE:Q9FF65
EnsemblPlants:AT5G05090.1 GeneID:830391 KEGG:ath:AT5G05090
TAIR:At5g05090 InParanoid:Q9FF65 OMA:MREEDSN PhylomeDB:Q9FF65
ProtClustDB:CLSN2716677 ArrayExpress:Q9FF65 Genevestigator:Q9FF65
Uniprot:Q9FF65
Length = 266
Score = 225 (84.3 bits), Expect = 9.8e-18, P = 9.8e-18
Identities = 49/96 (51%), Positives = 66/96 (68%)
Query: 198 SAKEEDDGELESDDPSTT-KKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGL 256
++ E G+ D+P+ T K+PR+VW+ +LH++FV AV LGI AVPK I++LM+V GL
Sbjct: 61 NSSAEIAGDSTGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGL 120
Query: 257 TRENVASHLQEINLQKFRLYLKRLNGVSQQGGITNS 292
TRENVASHLQ K+RLYLKR+ GG +S
Sbjct: 121 TRENVASHLQ-----KYRLYLKRMKSGGGGGGSGDS 151
>TAIR|locus:2058445 [details] [associations]
symbol:MYBC1 "AT2G40970" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009409 "response to cold" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0009409 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AC004261
HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC002409 EMBL:AY072381
EMBL:BT000098 IPI:IPI00539516 PIR:T00761 RefSeq:NP_181630.1
UniGene:At.27776 ProteinModelPortal:O22210 SMR:O22210
EnsemblPlants:AT2G40970.1 GeneID:818697 KEGG:ath:AT2G40970
TAIR:At2g40970 eggNOG:NOG255246 HOGENOM:HOG000238691
InParanoid:O22210 OMA:RYEDSEY PhylomeDB:O22210
ProtClustDB:CLSN2913178 ArrayExpress:O22210 Genevestigator:O22210
Uniprot:O22210
Length = 248
Score = 220 (82.5 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 46/86 (53%), Positives = 60/86 (69%)
Query: 205 GELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASH 264
G + + T K+PR+VW+ +LH++FV AV LGI AVPK I++LM+V GLTRENVASH
Sbjct: 93 GSIGGEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVEGLTRENVASH 152
Query: 265 LQEINLQKFRLYLKRLNGVSQQGGIT 290
LQ K+RLYL+R+ G GIT
Sbjct: 153 LQ-----KYRLYLRRMQG-GNGNGIT 172
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 241 (89.9 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 52/149 (34%), Positives = 88/149 (59%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
LRVL+V+ D + +I+ +LR+C Y V S A ++L+E+ D++L+++ +P +
Sbjct: 37 LRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSHNIDLILTELDLPSIS 96
Query: 94 GFKLL----EHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146
GF LL EH + ++PVI + + V++ + GA DYLIKP+R+ ELKN+WQHV
Sbjct: 97 GFALLALVMEHEACK-NIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQHV 155
Query: 147 VRKRWNENKEHENSGSLEETDHHKRGSDE 175
R+ + ++ SL + H+ +DE
Sbjct: 156 WRRLTLRDDPTAHAQSLPASQHNLEDTDE 184
Score = 40 (19.1 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 191 KAQRKRISAKEEDDGELESDDPSTTKKPR 219
KA K + A + E + S+T+KP+
Sbjct: 375 KAASKEVEAGSQSTNEGIAGQSSSTEKPK 403
>TAIR|locus:2167639 [details] [associations]
symbol:GLK2 "AT5G44190" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP;IDA] [GO:0009658 "chloroplast organization"
evidence=IMP] [GO:0009910 "negative regulation of flower
development" evidence=IGI] [GO:0010380 "regulation of chlorophyll
biosynthetic process" evidence=IGI] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0006417 "regulation of translation" evidence=RCA]
[GO:0009651 "response to salt stress" evidence=RCA] [GO:0009657
"plastid organization" evidence=RCA] [GO:0009737 "response to
abscisic acid stimulus" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0010027 "thylakoid membrane organization"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045893 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 EMBL:AB005239
GO:GO:0009658 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
PROSITE:PS51293 GO:GO:0009910 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237698 EMBL:AB062490 EMBL:AY026773 EMBL:AY028368
EMBL:AY050386 EMBL:AY124819 IPI:IPI00535889 RefSeq:NP_199232.1
UniGene:At.19638 ProteinModelPortal:Q9FFH0 SMR:Q9FFH0 STRING:Q9FFH0
EnsemblPlants:AT5G44190.1 GeneID:834442 KEGG:ath:AT5G44190
TAIR:At5g44190 eggNOG:NOG271712 InParanoid:Q9FFH0 OMA:QEMEGNT
PhylomeDB:Q9FFH0 ProtClustDB:CLSN2916711 Genevestigator:Q9FFH0
Uniprot:Q9FFH0
Length = 386
Score = 219 (82.2 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 54/134 (40%), Positives = 72/134 (53%)
Query: 152 NENKEHE-NSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGELESD 210
+E +E E N+ + ET G + E + G + KR K +D SD
Sbjct: 84 DEEQEMEGNTSTASETSERDVGVCKQEGGGGGDGGFRDKTVRRGKRKGKKSKD---CLSD 140
Query: 211 DPSTTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINL 270
+ KKP+V W+ ELH++FV AV QLG+DKAVP RILE+MNV LTR NVASHLQ+
Sbjct: 141 ENDIKKKPKVDWTPELHRKFVQAVEQLGVDKAVPSRILEIMNVKSLTRHNVASHLQKYRS 200
Query: 271 QKFRLYLKRLNGVS 284
+ L + S
Sbjct: 201 HRKHLLAREAEAAS 214
Score = 40 (19.1 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 396 GFGVWASNSLGAVASTSNLGGLNP 419
G+G+ +SN T LG NP
Sbjct: 309 GYGMASSNHSSIGVPTRQLGPTNP 332
>TAIR|locus:2199342 [details] [associations]
symbol:APRR6 "pseudo-response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AC016447 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557 KO:K14491
IPI:IPI00522591 IPI:IPI01020037 PIR:E96705 RefSeq:NP_176988.4
UniGene:At.52431 ProteinModelPortal:Q9C9F6 SMR:Q9C9F6 PaxDb:Q9C9F6
PRIDE:Q9C9F6 GeneID:843150 KEGG:ath:AT1G68210 GeneFarm:4346
TAIR:At1g68210 eggNOG:NOG320519 OMA:IANIEMP Genevestigator:Q9C9F6
Uniprot:Q9C9F6
Length = 755
Score = 141 (54.7 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 34/126 (26%), Positives = 67/126 (53%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+ +L++D D + L ML++ V + A+ AL ++ ++K ++++++ MP +D
Sbjct: 13 ISILLIDHDTASIASLTSMLQQFSKRVMSVDVASKALSMIEKQKKEIGLIIANIEMPHID 72
Query: 94 GFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150
L + L+ D+P+I + + + AC L KPI +++KN+WQHV K+
Sbjct: 73 SHSFLNALLLK-DIPLILINPEIKTKEPSDLLTKRACFSLDKPISNDDIKNMWQHVFSKK 131
Query: 151 WNENKE 156
E K+
Sbjct: 132 SQELKK 137
Score = 120 (47.3 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQ 271
+W+ E H +F++A++ LG + PK ILE+MN P LT V SHLQ+ Q
Sbjct: 226 LWNSERHMKFIAAISILGEEDFRPKSILEIMNDPNLTHRQVGSHLQKYKAQ 276
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 199 (75.1 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 44/123 (35%), Positives = 69/123 (56%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+R+L+ D+D T L + +L C Y VT A +D L D++L+++ +P
Sbjct: 19 VRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPDIDIILAEIDLPMAK 78
Query: 94 GFKLLEHIGLEMDL---PVITDGR---VSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147
G K+L +I + DL PVI R V V++ ++ GA DYL+KP+R EL N+W H+
Sbjct: 79 GMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLRTNELLNLWTHMW 138
Query: 148 RKR 150
R+R
Sbjct: 139 RRR 141
Score = 49 (22.3 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 24/93 (25%), Positives = 42/93 (45%)
Query: 168 HH-KRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGE-LESDD--PSTTKKPRVV-W 222
HH RG+ E ++ +EG T +A R R + + GE L++ P + ++ R +
Sbjct: 345 HHLHRGAAE-KFQVVASEGINNTKQAHRSRGTEQYHSQGETLQNGASYPHSLERSRTLPT 403
Query: 223 SVELHQQFVSAVNQLGIDKAVPKRILELMNVPG 255
S+E H + N + I + R + V G
Sbjct: 404 SMESHGRNYQEGN-MNIPQVAMNRSKDSSQVDG 435
Score = 39 (18.8 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 17/75 (22%), Positives = 31/75 (41%)
Query: 544 NTSSQQVQNSNIAFRAARQVPGLVSNVGDIQGSYGAKSGEVFDLGSLRNHGFMGKGNCIP 603
NT+S + + + R+ R N+ + + + V R+ G +G
Sbjct: 167 NTNSTNLFSDDTDDRSLRSTNPQRGNLSHQENEWSVATAPVH----ARDGG-LGADGTAT 221
Query: 604 SRLAVDEFESPMNNL 618
S LAV E P+++L
Sbjct: 222 SSLAVTAIEPPLDHL 236
Score = 38 (18.4 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 368 FGQQLVKCQSNVPENL 383
+G Q+ CQ N P +
Sbjct: 466 YGHQIPHCQPNHPNGM 481
>DICTYBASE|DDB_G0284331 [details] [associations]
symbol:regA "response regulator receiver
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030587 "sorocarp development" evidence=IMP] [GO:0051281
"positive regulation of release of sequestered calcium ion into
cytosol" evidence=IMP] [GO:0051279 "regulation of release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0046058
"cAMP metabolic process" evidence=IMP] [GO:0031276 "negative
regulation of lateral pseudopodium assembly" evidence=IMP]
[GO:0004115 "3',5'-cyclic-AMP phosphodiesterase activity"
evidence=IDA;IMP] [GO:0005622 "intracellular" evidence=TAS]
[GO:0006970 "response to osmotic stress" evidence=TAS] [GO:0030435
"sporulation resulting in formation of a cellular spore"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IMP] [GO:0047555 "3',5'-cyclic-GMP phosphodiesterase
activity" evidence=IDA] [GO:0006198 "cAMP catabolic process"
evidence=IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0004114 "3',5'-cyclic-nucleotide
phosphodiesterase activity" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0030552 "cAMP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002073 InterPro:IPR003607
InterPro:IPR023088 InterPro:IPR023174 Pfam:PF00072 Pfam:PF00233
PRINTS:PR00387 PROSITE:PS00126 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 dictyBase:DDB_G0284331 GO:GO:0005829
GenomeReviews:CM000153_GR GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0030435 GO:GO:0030587 GO:GO:0005622 GO:GO:0006970
GO:GO:0051281 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:AAFI02000064 GO:GO:0030552 GO:GO:0031276
GO:GO:0004115 GO:GO:0006198 Gene3D:1.10.1300.10 EMBL:U60170
EMBL:AJ005398 RefSeq:XP_638612.1 ProteinModelPortal:Q23917
STRING:Q23917 EnsemblProtists:DDB0191479 GeneID:8624583
KEGG:ddi:DDB_G0284331 OMA:SHYETIC ProtClustDB:CLSZ2728943
Uniprot:Q23917
Length = 793
Score = 196 (74.1 bits), Expect = 6.9e-12, P = 6.9e-12
Identities = 66/232 (28%), Positives = 114/232 (49%)
Query: 20 RAADVAVPDQF-PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKG 78
R +D + D++ P+ +R+LV DDD +IL +L++ YNVT +A + + + +
Sbjct: 147 RVSDFS--DEYSPSKVRILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINKGQQ 204
Query: 79 CFDVVLSDVHMPDMDGFKLLEHIG---LEMDLPVITDGRVSAVMR----GIRHGACDYLI 131
+D+VL+DV MP + GF LL+ I + +PVI + + I+ G D+L
Sbjct: 205 KYDLVLTDVMMPHITGFDLLQRINDHPVHRHIPVILMSGTAVDYKYANDTIKIGGQDFLT 264
Query: 132 KPIREEELKNIWQHVVRKRWNENKEHENSGSL-EETDHHKRGSDEIEYASSVNEGTEGTF 190
KPI +E LK V++ W KE E +L +E + + + E+E +E E T
Sbjct: 265 KPIAKELLKKKIDTVLQSIWQRRKEEEYKATLAQEREKGNKLAKEMELKE--HEIEELTK 322
Query: 191 KAQRKRISAKEEDDGELESDDPSTTKK-PRVVWS---VELHQQFVSAVNQLG 238
K + +KE + L S + + + WS E+ ++ S + +LG
Sbjct: 323 KVSKMSSISKEAMESPLVSVTRNIEELLKQSSWSHYESEIKEKLSSILKELG 374
>UNIPROTKB|Q5Z5I4 [details] [associations]
symbol:GLK1 "Probable transcription factor GLK1"
species:39947 "Oryza sativa Japonica Group" [GO:0010638 "positive
regulation of organelle organization" evidence=IGI] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IGI]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
GO:GO:0045893 GO:GO:0003677 EMBL:AP008212 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AP005688 EMBL:AK061946 EMBL:AK065184
EMBL:AK098909 EMBL:AK122161 RefSeq:NP_001057583.2 UniGene:Os.3340
ProteinModelPortal:Q5Z5I4 STRING:Q5Z5I4
EnsemblPlants:LOC_Os06g24070.1 GeneID:4340977 KEGG:osa:4340977
Gramene:Q5Z5I4 eggNOG:NOG283574 HOGENOM:HOG000237698 OMA:IDSLTRH
ProtClustDB:CLSN2696175 GO:GO:0010638 Uniprot:Q5Z5I4
Length = 455
Score = 191 (72.3 bits), Expect = 8.9e-12, P = 8.9e-12
Identities = 46/134 (34%), Positives = 72/134 (53%)
Query: 158 ENSGSLEETDHHKRGSDEIEYA--SSVNEGT---EGTFKAQRKRISAKEEDDGELESDDP 212
E + + K G ++ + A ++V++G E + S+ +E + +S
Sbjct: 114 EENAAFAGAGEEKGGCNQDDDAGEANVDDGAAAVEAKSSSPSSTTSSSQEAESRHKSSSK 173
Query: 213 ST--TKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINL 270
S+ KK +V W+ ELH++FV AV QLGIDKAVP RILE+M + LTR N+ASHLQ+
Sbjct: 174 SSHGKKKAKVDWTPELHRRFVQAVEQLGIDKAVPSRILEIMGIDSLTRHNIASHLQKYRS 233
Query: 271 QKFRLYLKRLNGVS 284
+ + + S
Sbjct: 234 HRKHMIAREAEAAS 247
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 194 (73.4 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 56/168 (33%), Positives = 88/168 (52%)
Query: 34 LRVLVVDDDITCLR-ILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
+RVL+V++D C R I+ +LR C Y V S A +L + D+VL++V MP +
Sbjct: 78 IRVLLVEND-DCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYL 136
Query: 93 DGF----KLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 145
G K+L H ++PVI + + V + + GA D+L+KPIR+ ELK +WQH
Sbjct: 137 SGIGLLCKILNHKS-RRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQH 195
Query: 146 VVRKRWNENKEHENSGSLEETDHHK----RGSDEIEYASSVNE-GTEG 188
V R+ + + SG+ + K + SD+ +S NE G+ G
Sbjct: 196 VWRRCQSSSGSGSESGTHQTQKSVKSKSIKKSDQDSGSSDENENGSIG 243
>UNIPROTKB|Q4GZK8 [details] [associations]
symbol:rr3 "Type A response regulator 3" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000127 EMBL:AJ938072
STRING:Q4GZK8 Uniprot:Q4GZK8
Length = 131
Score = 159 (61.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 40/130 (30%), Positives = 70/130 (53%)
Query: 26 VPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85
VP+ P VL VDD I ++ ++LR Y VTT AL++L + ++++
Sbjct: 6 VPEPEP---HVLAVDDSIVDRTVISRLLRSSKYRVTTVDSGKRALEVLSLDRNVH-MIIT 61
Query: 86 DVHMPDMDGFKLLEHI--GLEM-DLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEEL 139
D MP+M GF LL+ + E+ ++PV+ ++ + + R + GA D+LIKP+R ++
Sbjct: 62 DYCMPEMTGFDLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKPVRPSDV 121
Query: 140 KNIWQHVVRK 149
+ V+ K
Sbjct: 122 SRLCNRVIMK 131
>TAIR|locus:2148720 [details] [associations]
symbol:PHL1 "AT5G29000" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
HSSP:O49397 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
EMBL:AC018632 EMBL:BT002344 EMBL:AY085154 IPI:IPI00527102
IPI:IPI00527253 IPI:IPI00891441 RefSeq:NP_001078629.1
RefSeq:NP_001119299.1 RefSeq:NP_568512.3 RefSeq:NP_851090.1
UniGene:At.26183 ProteinModelPortal:Q8GUN5 SMR:Q8GUN5 PRIDE:Q8GUN5
EnsemblPlants:AT5G29000.2 GeneID:833026 KEGG:ath:AT5G29000
TAIR:At5g29000 eggNOG:NOG275266 InParanoid:Q8GUN5 OMA:DSSSHNP
PhylomeDB:Q8GUN5 ProtClustDB:CLSN2680328 Genevestigator:Q8GUN5
Uniprot:Q8GUN5
Length = 413
Score = 176 (67.0 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 38/104 (36%), Positives = 65/104 (62%)
Query: 189 TFKAQRKRISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLG-IDKAVPKRI 247
T Q++ +S++++ G S +T+K+ R+ W+ ELH+ FV AVNQLG ++A PK +
Sbjct: 204 TANQQQQMVSSEDQLSGRNSSSSVATSKQ-RMRWTPELHEAFVEAVNQLGGSERATPKAV 262
Query: 248 LELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQGGITN 291
L+L+N PGLT +V SHLQ+ +++ + G Q+ +T+
Sbjct: 263 LKLLNNPGLTIYHVKSHLQKYRTARYKPETSEVTGEPQEKKMTS 306
>TAIR|locus:2172394 [details] [associations]
symbol:MYR1 "myb-related protein 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002688 GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AB012246
HSSP:O49397 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
IPI:IPI00538966 RefSeq:NP_197325.1 RefSeq:NP_974798.1
UniGene:At.7556 ProteinModelPortal:Q9FK47 SMR:Q9FK47
EnsemblPlants:AT5G18240.1 EnsemblPlants:AT5G18240.4 GeneID:831942
KEGG:ath:AT5G18240 TAIR:At5g18240 InParanoid:Q9FK47 OMA:LETHTRT
PhylomeDB:Q9FK47 ProtClustDB:CLSN2686543 Genevestigator:Q9FK47
Uniprot:Q9FK47
Length = 402
Score = 172 (65.6 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 41/89 (46%), Positives = 55/89 (61%)
Query: 213 STTKKPRVVWSVELHQQFVSAVNQLGI-DKAVPKRILELMNVPGLTRENVASHLQEINLQ 271
ST KPR+ W+ +LH++FV AVNQLG DKA PK I+++M +PGLT ++ SHLQ
Sbjct: 41 STDAKPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQ----- 95
Query: 272 KFRLYLKRLNGVSQQGGITNSFCAPIETN 300
K+RL K LNG + S +E N
Sbjct: 96 KYRLS-KNLNGQANSSLNKTSVMTMVEEN 123
>TAIR|locus:2095933 [details] [associations]
symbol:MYR2 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC011698
ProtClustDB:CLSN2686543 IPI:IPI00524229 RefSeq:NP_001118567.1
UniGene:At.40915 ProteinModelPortal:Q9SQQ9 SMR:Q9SQQ9
EnsemblPlants:AT3G04030.3 GeneID:819558 KEGG:ath:AT3G04030
TAIR:At3g04030 InParanoid:Q9SQQ9 OMA:HITSERH PhylomeDB:Q9SQQ9
Genevestigator:Q9SQQ9 Uniprot:Q9SQQ9
Length = 394
Score = 170 (64.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 37/71 (52%), Positives = 50/71 (70%)
Query: 213 STTKKPRVVWSVELHQQFVSAVNQLG-IDKAVPKRILELMNVPGLTRENVASHLQEINLQ 271
ST KPR+ W+ +LH++F+ AVNQLG DKA PK I+++M +PGLT ++ SHLQ
Sbjct: 41 STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQ----- 95
Query: 272 KFRLYLKRLNG 282
K+RL K LNG
Sbjct: 96 KYRLS-KNLNG 105
>UNIPROTKB|P14375 [details] [associations]
symbol:zraR species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IGI;IEP;ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA;IDA] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0005737 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:U00006 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
HOGENOM:HOG000058487 EMBL:M28369 PIR:G65207 RefSeq:NP_418432.1
RefSeq:YP_491456.1 ProteinModelPortal:P14375 SMR:P14375
DIP:DIP-9980N PRIDE:P14375 EnsemblBacteria:EBESCT00000003356
EnsemblBacteria:EBESCT00000015912 GeneID:12933469 GeneID:948505
KEGG:ecj:Y75_p3192 KEGG:eco:b4004 PATRIC:32123533 EchoBASE:EB0477
EcoGene:EG10482 KO:K07713 OMA:AEVNAGH ProtClustDB:PRK10365
BioCyc:EcoCyc:HYDG-MONOMER BioCyc:ECOL316407:JW3968-MONOMER
Genevestigator:P14375 Uniprot:P14375
Length = 441
Score = 169 (64.5 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 44/109 (40%), Positives = 64/109 (58%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+LVVDDDI+ IL+ +LR YNV + AL+ +RE+ FD+VL DV M +MDG
Sbjct: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ--VFDLVLCDVRMAEMDGI 65
Query: 96 KLLEHI-GLEMDLPVITDGRVSAV---MRGIRHGACDYLIKPIREEELK 140
L+ I L +PV+ S+V + ++ GA DYLIKP+ + L+
Sbjct: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQ 114
>TIGR_CMR|GSU_3418 [details] [associations]
symbol:GSU_3418 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025662
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00676 PROSITE:PS00688 HOGENOM:HOG000058487
RefSeq:NP_954458.1 ProteinModelPortal:Q746V0 GeneID:2686607
KEGG:gsu:GSU3418 PATRIC:22029693 OMA:LSIYSFP
ProtClustDB:CLSK2522262 BioCyc:GSUL243231:GH27-3392-MONOMER
Uniprot:Q746V0
Length = 490
Score = 163 (62.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 54/162 (33%), Positives = 84/162 (51%)
Query: 27 PDQFPAGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVL 84
P+++P +L+VDD+ LR L LR + N+ CS + +DILRE + ++L
Sbjct: 3 PEKYPPK-PILLVDDEAAWLRSLSLTLREATGIDNIIKCSDSRQVMDILRETE--VSLIL 59
Query: 85 SDVHMPDMDGFKLLEHIGLEM-DLPVIT-DG--RVSAVMRGIRHGACDYLIKPIREEELK 140
D+ MP G LL+ IG E D+PVI G +V +R ++ GA DY +K + +E L
Sbjct: 60 LDLTMPYFSGTDLLQMIGQEYPDIPVIVLSGLNQVETAVRCMQLGAFDYYVKTVEKERLI 119
Query: 141 NIWQHV--VRKRWNENKEHENSGSLEETDHHKRGSDEIEYAS 180
Q +++ NEN+ + + LE+ H EI AS
Sbjct: 120 TGIQRAFSMQEMRNENRSLK-ARFLEDHLAHPEAFAEIMTAS 160
>TIGR_CMR|GSU_2693 [details] [associations]
symbol:GSU_2693 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953738.1 ProteinModelPortal:Q749P9 GeneID:2687548
KEGG:gsu:GSU2693 PATRIC:22028241 OMA:VEMHRAR
BioCyc:GSUL243231:GH27-2669-MONOMER Uniprot:Q749P9
Length = 128
Score = 140 (54.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 42/121 (34%), Positives = 64/121 (52%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+ VL+VDDD+ L +L +L VT+ S+ A A+DI+R K FD+V++D MP M+
Sbjct: 4 INVLIVDDDVNFLYVLGLLLESKDLEVTSASRGAEAVDIVR--KTTFDMVITDFSMPGMN 61
Query: 94 GFKLLEHIG-LEMDLPV--ITDGRVSAVMRGIRH-GACDYLIKPIREEELKNIWQHVVRK 149
G +L + L DLPV +T S ++ G C L KP+ L +H R+
Sbjct: 62 GLELAAAVKELHPDLPVMMVTCEVTSDLIEMATDVGICRVLDKPVNVGRLLADIRHFSRR 121
Query: 150 R 150
+
Sbjct: 122 K 122
>UNIPROTKB|Q3ADB1 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 RefSeq:YP_359873.1 ProteinModelPortal:Q3ADB1
STRING:Q3ADB1 GeneID:3728270 KEGG:chy:CHY_1026 PATRIC:21275187
OMA:GATAWIT BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 35/120 (29%), Positives = 67/120 (55%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L +DD T L+ ++ L R + V T ++ + ALD+L + K FD++++D++MP+MDG
Sbjct: 3 KILALDDSATMLQSIKISLLRKGHQVATFTKGSEALDMLGKEK--FDLIITDLNMPEMDG 60
Query: 95 FKLLEHIGLEMDL---PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148
++ + + PVI T+ + + + R GA ++ KP E+L + + V R
Sbjct: 61 ITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPFTPEQLLGVVEKVAR 120
>TIGR_CMR|CHY_1026 [details] [associations]
symbol:CHY_1026 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 RefSeq:YP_359873.1
ProteinModelPortal:Q3ADB1 STRING:Q3ADB1 GeneID:3728270
KEGG:chy:CHY_1026 PATRIC:21275187 OMA:GATAWIT
BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 35/120 (29%), Positives = 67/120 (55%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L +DD T L+ ++ L R + V T ++ + ALD+L + K FD++++D++MP+MDG
Sbjct: 3 KILALDDSATMLQSIKISLLRKGHQVATFTKGSEALDMLGKEK--FDLIITDLNMPEMDG 60
Query: 95 FKLLEHIGLEMDL---PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148
++ + + PVI T+ + + + R GA ++ KP E+L + + V R
Sbjct: 61 ITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPFTPEQLLGVVEKVAR 120
>TIGR_CMR|GSU_1320 [details] [associations]
symbol:GSU_1320 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K02481
HSSP:P06143 RefSeq:NP_952373.2 GeneID:2686471 KEGG:gsu:GSU1320
PATRIC:22025417 ProtClustDB:CLSK828298
BioCyc:GSUL243231:GH27-1307-MONOMER Uniprot:Q74DJ6
Length = 461
Score = 160 (61.4 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 41/110 (37%), Positives = 59/110 (53%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
RVL+VDDD++ R+LE L+ Y+V T L + ER +V++D+ MP M G
Sbjct: 10 RVLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGLRLFDERSPA--LVVTDLKMPGMGG 67
Query: 95 FKLLEHI-GLEMDLPVITD---GRVSAVMRGIRHGACDYLIKPIREEELK 140
F+LL+ I G D VI G V + ++ GA DY+ KP + LK
Sbjct: 68 FRLLQEIKGRSPDTAVIVITAFGAVETAVDAMKAGAYDYITKPFNRDALK 117
>TAIR|locus:2206415 [details] [associations]
symbol:APL "ALTERED PHLOEM DEVELOPMENT" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0010088 "phloem development"
evidence=IMP] [GO:0010089 "xylem development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0010089 EMBL:AC007202 EMBL:AY045662 EMBL:AY143841
EMBL:AK316719 IPI:IPI00538563 IPI:IPI00542908 PIR:D96825
RefSeq:NP_565209.1 RefSeq:NP_849905.1 UniGene:At.23550 HSSP:O49397
ProteinModelPortal:Q9SAK5 SMR:Q9SAK5 IntAct:Q9SAK5 STRING:Q9SAK5
PRIDE:Q9SAK5 EnsemblPlants:AT1G79430.2 GeneID:844281
KEGG:ath:AT1G79430 TAIR:At1g79430 eggNOG:NOG261203
HOGENOM:HOG000239390 InParanoid:Q94AW3 OMA:CQTLAGE PhylomeDB:Q9SAK5
ProtClustDB:CLSN2689327 Genevestigator:Q9SAK5 GO:GO:0010088
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 Uniprot:Q9SAK5
Length = 358
Score = 158 (60.7 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 37/78 (47%), Positives = 49/78 (62%)
Query: 196 RISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLG-IDKAVPKRILELMNVP 254
R + D G + + DP KPR+ W+VELH++FV AV QLG DKA PK I+ +M V
Sbjct: 17 RAMCVQGDSGLVLTTDP----KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVK 72
Query: 255 GLTRENVASHLQEINLQK 272
GLT ++ SHLQ+ L K
Sbjct: 73 GLTLYHLKSHLQKFRLGK 90
Score = 42 (19.8 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 621 GNIYLDNNANKVKEEPNLEFVENAKVGIPMY 651
GN D N K+ PN F + + G+ M+
Sbjct: 243 GNNAADTNIYLGKKRPNPNFGNDVRKGLLMW 273
>TIGR_CMR|GSU_1989 [details] [associations]
symbol:GSU_1989 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00688 RefSeq:NP_953038.1 ProteinModelPortal:Q74BQ2
GeneID:2686140 KEGG:gsu:GSU1989 PATRIC:22026841 OMA:IARSLHY
ProtClustDB:CLSK743130 BioCyc:GSUL243231:GH27-2007-MONOMER
Uniprot:Q74BQ2
Length = 444
Score = 158 (60.7 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 44/122 (36%), Positives = 65/122 (53%)
Query: 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
GL VL+VDD+ R+L +L + V T S A+ A IL+ R D +++D+ MP
Sbjct: 3 GL-VLIVDDEPNAARVLSAILAGEGHTVLTASDASKAEHILKSRD--VDAIITDLRMPGR 59
Query: 93 DGFKLLEHIGLEM-DLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148
DG +L EH+ + D+PVI G V + + I GA Y IKP +LK++ V
Sbjct: 60 DGMQLFEHVTEHLPDIPVIFLTAYGTVDSAVNAITRGAFYYFIKPPDYVKLKSMVARAVE 119
Query: 149 KR 150
+R
Sbjct: 120 QR 121
>UNIPROTKB|A5U0E5 [details] [associations]
symbol:phoP "Putative two component system response
transcriptional positive regulator PhoP" species:419947
"Mycobacterium tuberculosis H37Ra" [GO:0042802 "identical protein
binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745 EMBL:CP000611
GenomeReviews:CP000611_GR HOGENOM:HOG000034815 KO:K02483
RefSeq:YP_001282057.1 ProteinModelPortal:A5U0E5 SMR:A5U0E5
STRING:A5U0E5 PRIDE:A5U0E5 EnsemblBacteria:EBMYCT00000067475
GeneID:5215306 KEGG:mra:MRA_0767 PATRIC:18141256 OMA:KPRILDH
ProtClustDB:CLSK790716 BioCyc:MTUB419947:GJ8N-786-MONOMER
Uniprot:A5U0E5
Length = 247
Score = 151 (58.2 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 45/129 (34%), Positives = 66/129 (51%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
RVLVVDD+ + +L L+ + V T + A ALD RE + D V+ DV MP MDG
Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRP--DAVILDVMMPGMDG 79
Query: 95 FKLLEHIGLE-MDLPVI-TDGRVSAV--MRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150
F +L + + +D P + R S + G+ G DY+ KP EE+ + ++R+
Sbjct: 80 FGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 139
Query: 151 WNENKEHEN 159
NKE N
Sbjct: 140 GKGNKEPRN 148
>UNIPROTKB|P71814 [details] [associations]
symbol:phoP "Possible two component system response
transcriptional positive regulator PhoP" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0006979 "response to oxidative stress"
evidence=IMP] [GO:0009247 "glycolipid biosynthetic process"
evidence=IMP] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0044315
"protein secretion by the type VII secretion system" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0045892 GO:GO:0045893
GO:GO:0009405 GO:GO:0006979 GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0009247 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:BX842574 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 GO:GO:0044315 KO:K02483
OMA:KPRILDH ProtClustDB:CLSK790716 EMBL:AL123456 PIR:H70705
RefSeq:NP_215271.1 RefSeq:YP_006514104.1 PDB:3R0J PDBsum:3R0J
ProteinModelPortal:P71814 SMR:P71814
EnsemblBacteria:EBMYCT00000002360 GeneID:13318651 GeneID:888772
KEGG:mtu:Rv0757 KEGG:mtv:RVBD_0757 PATRIC:18150200
TubercuList:Rv0757 Uniprot:P71814
Length = 247
Score = 151 (58.2 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 45/129 (34%), Positives = 66/129 (51%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
RVLVVDD+ + +L L+ + V T + A ALD RE + D V+ DV MP MDG
Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRP--DAVILDVMMPGMDG 79
Query: 95 FKLLEHIGLE-MDLPVI-TDGRVSAV--MRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150
F +L + + +D P + R S + G+ G DY+ KP EE+ + ++R+
Sbjct: 80 FGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 139
Query: 151 WNENKEHEN 159
NKE N
Sbjct: 140 GKGNKEPRN 148
>UNIPROTKB|P0AE88 [details] [associations]
symbol:cpxR "CpxR transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS;IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0045892
GO:GO:0045893 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:L19201
eggNOG:COG0745 HOGENOM:HOG000034819 EMBL:M36795 EMBL:X13307
EMBL:L14579 PIR:C65197 RefSeq:NP_418348.1 RefSeq:YP_491538.1
ProteinModelPortal:P0AE88 SMR:P0AE88 DIP:DIP-47991N IntAct:P0AE88
MINT:MINT-1292432 PaxDb:P0AE88 EnsemblBacteria:EBESCT00000002313
EnsemblBacteria:EBESCT00000017066 GeneID:12933651 GeneID:948404
KEGG:ecj:Y75_p3274 KEGG:eco:b3912 PATRIC:32123337 EchoBASE:EB0019
EcoGene:EG10020 KO:K07662 OMA:YQTPVIM ProtClustDB:PRK10955
BioCyc:EcoCyc:CPXR-MONOMER BioCyc:ECOL316407:JW3883-MONOMER
Genevestigator:P0AE88 Uniprot:P0AE88
Length = 232
Score = 149 (57.5 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 42/132 (31%), Positives = 70/132 (53%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDDD +L+++L +NV ALD+L + D++L DV MP +G
Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS---IDLLLLDVMMPKKNG 59
Query: 95 FKLLEHIGLEMDLPVIT-DGRVSAVMR--GIRHGACDYLIKPIREEELKNIWQHVVRK-R 150
L+ + PVI R S + R G+ GA DYL KP + EL + ++R+
Sbjct: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119
Query: 151 WNENKEHENSGS 162
W+E +++ ++GS
Sbjct: 120 WSEQQQNNDNGS 131
>TIGR_CMR|CJE_1261 [details] [associations]
symbol:CJE_1261 "chemotaxis protein CheY" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413
OMA:DVLITDW ProtClustDB:CLSK872349 RefSeq:YP_179249.1
ProteinModelPortal:Q5HTY6 STRING:Q5HTY6 GeneID:3231768
KEGG:cjr:CJE1261 PATRIC:20044318
BioCyc:CJEJ195099:GJC0-1287-MONOMER Uniprot:Q5HTY6
Length = 130
Score = 135 (52.6 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 35/121 (28%), Positives = 68/121 (56%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
+++LVVDD T RI++ L R ++ V A D+L + + V+++D +MP+M
Sbjct: 1 MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKNEDV-KVLITDWNMPEM 59
Query: 93 DGFKLLEHIGLEM---DLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146
+G +L++ + E D+P+I T+G + V+ ++ G +Y++KP + LK + V
Sbjct: 60 NGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEDV 119
Query: 147 V 147
+
Sbjct: 120 L 120
>TIGR_CMR|GSU_1117 [details] [associations]
symbol:GSU_1117 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P06143
RefSeq:NP_952170.1 ProteinModelPortal:Q74E47 GeneID:2686890
KEGG:gsu:GSU1117 PATRIC:22024996 OMA:ASNVIMI ProtClustDB:CLSK828188
BioCyc:GSUL243231:GH27-1119-MONOMER Uniprot:Q74E47
Length = 127
Score = 135 (52.6 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 34/119 (28%), Positives = 69/119 (57%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++LVVDD+ L ++L R + V + S AL+ L++R+ +V+++D++MP+M+G
Sbjct: 8 KILVVDDEENARIGLTKLLEREGFEVASVSNGFEALNYLQQRE--VNVIVTDINMPEMNG 65
Query: 95 FKLLEHIGLEM---DLPVITD-GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
L + ++ +IT G V + + + GA +Y+ KP++ +ELK+I + ++
Sbjct: 66 ITFLRELNKSFPRSNVIMITAYGGVESYIEAMNLGAFEYINKPVKLDELKSILTKIFKE 124
>TAIR|locus:2100880 [details] [associations]
symbol:AT3G04450 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
IPI:IPI00540345 RefSeq:NP_187095.2 UniGene:At.40835
ProteinModelPortal:F4J3P7 SMR:F4J3P7 PRIDE:F4J3P7
EnsemblPlants:AT3G04450.1 GeneID:819601 KEGG:ath:AT3G04450
OMA:WPDWADQ Uniprot:F4J3P7
Length = 442
Score = 156 (60.0 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 39/106 (36%), Positives = 58/106 (54%)
Query: 175 EIEYASSVNEGTEGTFKAQRKRISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAV 234
+IE SS E F+ Q + + E S T K R+ W+ ELH+ FV A+
Sbjct: 197 KIETQSSDIARQEIVFRNQHQ-VDPSMEPFNAKSPPASSMTSKQRMRWTPELHEAFVEAI 255
Query: 235 NQLG-IDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKR 279
NQLG ++A PK +L+L+N PGLT +V SHLQ+ +++ L +
Sbjct: 256 NQLGGSERATPKAVLKLINSPGLTVYHVKSHLQKYRTARYKPELSK 301
>UNIPROTKB|Q4GZK5 [details] [associations]
symbol:rr6 "Type A response regulator 6" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AJ938075 ProteinModelPortal:Q4GZK5 KEGG:dosa:Os04t0673300-01
Gramene:Q4GZK5 Uniprot:Q4GZK5
Length = 170
Score = 134 (52.2 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 34/129 (26%), Positives = 69/129 (53%)
Query: 25 AVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDIL-RERKGCFDVV 83
A D+ + + VL VDD ++ ++LR Y VTT A AL++L +++
Sbjct: 41 AAGDEAQSEMHVLAVDDSSVDRAVIAKILRSSKYRVTTVESATRALELLCLGLVPNVNMI 100
Query: 84 LSDVHMPDMDGFKLLEHI--GLEM-DLPVI---TDGRVSAVMRGIRHGACDYLIKPIREE 137
++D MP M G++LL+ + ++ ++PV+ ++ + + R + GA D+L+KP+R
Sbjct: 101 ITDYWMPGMTGYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEEGAEDFLLKPVRPS 160
Query: 138 ELKNIWQHV 146
++ + +
Sbjct: 161 DVSRLCSRI 169
>UNIPROTKB|Q3JZR1 [details] [associations]
symbol:csrR "DNA-binding response regulator CsrR"
species:205921 "Streptococcus agalactiae A909" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815
EMBL:CP000114 RefSeq:YP_330242.1 ProteinModelPortal:Q3JZR1
EnsemblBacteria:EBSTRT00000004344 GeneID:3685998
GenomeReviews:CP000114_GR KEGG:sak:SAK_1639 PATRIC:19634591
OMA:LASVWRY ProtClustDB:CLSK634230
BioCyc:SAGA205921:GHD7-1647-MONOMER Uniprot:Q3JZR1
Length = 229
Score = 146 (56.5 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 44/155 (28%), Positives = 78/155 (50%)
Query: 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
G ++L+++D+ R + L Y+V + LD E+ FD++L D+ +P+M
Sbjct: 2 GKKILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALEKD--FDLILLDLMLPEM 59
Query: 93 DGFKLLEHIGLEMDLPVIT-DGRVSA--VMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
DGF++ + E ++ R S ++ G+ GA DY++KP EEL + + R+
Sbjct: 60 DGFEITRRLQAEKTTYIMMMTARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRR 119
Query: 150 RWNENKEHE--NSGSLEETD---HHK---RGSDEI 176
+ E K E +SGS + H++ RG +EI
Sbjct: 120 QEIETKTKEKGDSGSFRDLSLNTHNRSAMRGDEEI 154
>TAIR|locus:2026739 [details] [associations]
symbol:AT1G69580 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002684 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 EMBL:AC021046 IPI:IPI00846148
RefSeq:NP_001077798.1 UniGene:At.52449 ProteinModelPortal:A8MSE5
SMR:A8MSE5 PRIDE:A8MSE5 EnsemblPlants:AT1G69580.2 GeneID:843294
KEGG:ath:AT1G69580 TAIR:At1g69580 eggNOG:NOG249461 OMA:MEINNNA
PhylomeDB:A8MSE5 ProtClustDB:CLSN2699064 ArrayExpress:A8MSE5
Genevestigator:A8MSE5 Uniprot:A8MSE5
Length = 337
Score = 156 (60.0 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 30/61 (49%), Positives = 44/61 (72%)
Query: 213 STTKKPRVVWSVELHQQFVSAVNQLG-IDKAVPKRILELMNVPGLTRENVASHLQEINLQ 271
ST KPR+ W+ +LH +F+ AVNQLG +KA PK ++++M +PGLT ++ SHLQ+ L
Sbjct: 30 STDAKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKYRLG 89
Query: 272 K 272
K
Sbjct: 90 K 90
Score = 37 (18.1 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 626 DNNANKVKEEPNLEFVENAKV 646
DNN NK E P +E N++V
Sbjct: 266 DNNLNKSIELPLMEI--NSEV 284
>UNIPROTKB|Q3ADA5 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 132 (51.5 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 32/110 (29%), Positives = 61/110 (55%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
++VL+VDD T + +++ + + V AL+ + G FD++ DV+MP MD
Sbjct: 1 MKVLIVDDSFTVRQYFKEIFQGFSWEVEEAVNGLEALE--KVLNGEFDLMTVDVNMPKMD 58
Query: 94 GFKLLEHIG-LEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEEL 139
G+ + + + + LPVI T+ + ++G++ GA YL+KP+ E++
Sbjct: 59 GYTFVYKVREMGVSLPVILISTESKEHDKLKGLQAGATLYLVKPVLPEQI 108
>UNIPROTKB|Q9KKK8 [details] [associations]
symbol:VC_A1096 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV
KO:K03413 HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1
ProteinModelPortal:Q9KKK8 DNASU:2612407 GeneID:2612407
KEGG:vch:VCA1096 PATRIC:20086710 ProtClustDB:CLSK789264
Uniprot:Q9KKK8
Length = 125
Score = 132 (51.5 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
+VL VDD I+ +++ L+ Y V T + AL + +K FDV++SDV+MP M G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREAL--AKAQKARFDVIISDVNMPVMTG 66
Query: 95 FKLLEHIGLEMDL---PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147
F+ ++ + ++ P++ T+ G GA +L+KP E L Q V+
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 125
>UNIPROTKB|Q9KQD5 [details] [associations]
symbol:VC_2065 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:GHYDFLV HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1
ProteinModelPortal:Q9KQD5 SMR:Q9KQD5 DNASU:2613445 GeneID:2613445
KEGG:vch:VC2065 PATRIC:20083164 ProtClustDB:CLSK874661
Uniprot:Q9KQD5
Length = 130
Score = 132 (51.5 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTT-CSQAAVALDILRERKGCFDVVLSDVHMPDM 92
+++L+VDD T RI++ +LR +N T AL +L+ KG FD V++D +MP M
Sbjct: 9 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGM 66
Query: 93 DGFKLLEHIGLEMDL---PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELK 140
G LL++I + +L PV+ + + ++ + G Y++KP LK
Sbjct: 67 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLK 120
>TIGR_CMR|CHY_1032 [details] [associations]
symbol:CHY_1032 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622
GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 132 (51.5 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 32/110 (29%), Positives = 61/110 (55%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
++VL+VDD T + +++ + + V AL+ + G FD++ DV+MP MD
Sbjct: 1 MKVLIVDDSFTVRQYFKEIFQGFSWEVEEAVNGLEALE--KVLNGEFDLMTVDVNMPKMD 58
Query: 94 GFKLLEHIG-LEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEEL 139
G+ + + + + LPVI T+ + ++G++ GA YL+KP+ E++
Sbjct: 59 GYTFVYKVREMGVSLPVILISTESKEHDKLKGLQAGATLYLVKPVLPEQI 108
>TIGR_CMR|VC_2065 [details] [associations]
symbol:VC_2065 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:GHYDFLV
HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1 ProteinModelPortal:Q9KQD5
SMR:Q9KQD5 DNASU:2613445 GeneID:2613445 KEGG:vch:VC2065
PATRIC:20083164 ProtClustDB:CLSK874661 Uniprot:Q9KQD5
Length = 130
Score = 132 (51.5 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTT-CSQAAVALDILRERKGCFDVVLSDVHMPDM 92
+++L+VDD T RI++ +LR +N T AL +L+ KG FD V++D +MP M
Sbjct: 9 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGM 66
Query: 93 DGFKLLEHIGLEMDL---PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELK 140
G LL++I + +L PV+ + + ++ + G Y++KP LK
Sbjct: 67 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLK 120
>TIGR_CMR|VC_A1096 [details] [associations]
symbol:VC_A1096 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV KO:K03413
HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1 ProteinModelPortal:Q9KKK8
DNASU:2612407 GeneID:2612407 KEGG:vch:VCA1096 PATRIC:20086710
ProtClustDB:CLSK789264 Uniprot:Q9KKK8
Length = 125
Score = 132 (51.5 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
+VL VDD I+ +++ L+ Y V T + AL + +K FDV++SDV+MP M G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREAL--AKAQKARFDVIISDVNMPVMTG 66
Query: 95 FKLLEHIGLEMDL---PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147
F+ ++ + ++ P++ T+ G GA +L+KP E L Q V+
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 125
>TIGR_CMR|GSU_0008 [details] [associations]
symbol:GSU_0008 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR013656 Pfam:PF08448
HSSP:P06143 RefSeq:NP_951070.1 ProteinModelPortal:Q74H84
GeneID:2688683 KEGG:gsu:GSU0008 PATRIC:22022753
HOGENOM:HOG000135130 OMA:HRFEAGR ProtClustDB:CLSK924354
BioCyc:GSUL243231:GH27-8-MONOMER Uniprot:Q74H84
Length = 516
Score = 155 (59.6 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 45/147 (30%), Positives = 72/147 (48%)
Query: 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD 91
+G +V +VDD+ IL+ L Y ALD L ER+ FD+VL D+ MP
Sbjct: 2 SGYKVFIVDDEADIALILKLQLEDAGYRTMRARDGIEALDAL-ERES-FDLVLLDIRMPR 59
Query: 92 MDGFKLLEHIGLEM-DLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147
MDG ++LE I DL VI G + ++ GA DY+ KP +++K + +
Sbjct: 60 MDGIEVLERIRDRWPDLVVIMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMKKRVERAI 119
Query: 148 RKRWNENK-EHENSGSLEETDHHKRGS 173
+ +N + E+E + + + K G+
Sbjct: 120 Q--FNRTRLENERLQRVLDEERRKMGA 144
>TIGR_CMR|CPS_1426 [details] [associations]
symbol:CPS_1426 "transcriptional regulatory protein RstA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_268169.1
ProteinModelPortal:Q485U6 STRING:Q485U6 GeneID:3518469
KEGG:cps:CPS_1426 PATRIC:21466063 ProtClustDB:CLSK749833
BioCyc:CPSY167879:GI48-1507-MONOMER Uniprot:Q485U6
Length = 248
Score = 147 (56.8 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 55/221 (24%), Positives = 101/221 (45%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L+V+DDI + L + VTTC + A+D+++ D+VL D +P MDG
Sbjct: 9 ILLVEDDIDLAEWIADYLIGREFKVTTCHRGDDAVDLIQSLNP--DIVLLDGMLPGMDGL 66
Query: 96 KLLEHIGLEMDLPVIT----DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151
+ + + D P+I D + V+ G+ GA DY+ KP+R L + ++R+
Sbjct: 67 DVCKTVRATFDNPIIMITARDEEIDEVL-GLEMGADDYITKPVRARVLLARIRGLLRRE- 124
Query: 152 NENKEHENSGSLEETDHHKRGSDEIEYASSV--NEGTEGTFKAQRKRISAKEEDDGELES 209
++++ + S + TD ++++ V + T + ++S+ E D +
Sbjct: 125 DKSRTADKSNVQQLTDEQLESKGVLKFSGLVISEQARSVTLDGESIKVSSNEFDVLWFLA 184
Query: 210 DDPSTTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILEL 250
TK +VV EL F + G D+++ RI L
Sbjct: 185 -----TKAGQVVSRKELVSHF-RGFDYDGFDRSIDLRISRL 219
>TIGR_CMR|GSU_1495 [details] [associations]
symbol:GSU_1495 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952546.1 ProteinModelPortal:Q74D24 GeneID:2686126
KEGG:gsu:GSU1495 PATRIC:22025837 KO:K02667 OMA:IHARAGH
ProtClustDB:CLSK828394 BioCyc:GSUL243231:GH27-1478-MONOMER
Uniprot:Q74D24
Length = 458
Score = 153 (58.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 46/122 (37%), Positives = 67/122 (54%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+ VLVVDD+++ L +L R Y V + A AL L ERK +D+V+SDV MP +D
Sbjct: 3 IHVLVVDDELSMREFLAILLDREGYTVDQAASAEEALACL-ERK-TYDLVISDVKMPGLD 60
Query: 94 GFKLLEHIGLEM--DLPVITDGRVSAVMRGI---RHGACDYLIKPIREEELKNIWQHVVR 148
G LL I EM D V+ S + + + GA DY+ KP + EE+K + ++ +
Sbjct: 61 GITLLGRIK-EMTPDTAVLLMTAFSTAEQAVEAMKLGAYDYIAKPFKVEEVKILARNALE 119
Query: 149 KR 150
KR
Sbjct: 120 KR 121
>TAIR|locus:2093726 [details] [associations]
symbol:AT3G24120 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0009086 "methionine
biosynthetic process" evidence=RCA] [GO:0010048 "vernalization
response" evidence=RCA] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002686 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00531757
RefSeq:NP_974356.1 UniGene:At.26588 ProteinModelPortal:F4J5D9
SMR:F4J5D9 EnsemblPlants:AT3G24120.2 GeneID:821998
KEGG:ath:AT3G24120 OMA:NLPGDAC PhylomeDB:F4J5D9 Uniprot:F4J5D9
Length = 298
Score = 149 (57.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/59 (52%), Positives = 40/59 (67%)
Query: 213 STTKKPRVVWSVELHQQFVSAVNQLG-IDKAVPKRILELMNVPGLTRENVASHLQEINL 270
+T KPR+ W+ ELH++FV AV QLG DKA PK I+ M V GLT ++ SHLQ+ L
Sbjct: 37 TTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 95
>TAIR|locus:2087740 [details] [associations]
symbol:AT3G12730 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY070764
EMBL:AY143916 IPI:IPI00519091 RefSeq:NP_187879.2 UniGene:At.28330
ProteinModelPortal:Q8VYI2 SMR:Q8VYI2 EnsemblPlants:AT3G12730.1
GeneID:820455 KEGG:ath:AT3G12730 TAIR:At3g12730 eggNOG:NOG317938
InParanoid:Q8VYI2 OMA:CETQEAS PhylomeDB:Q8VYI2
ProtClustDB:CLSN2917937 Genevestigator:Q8VYI2 Uniprot:Q8VYI2
Length = 235
Score = 145 (56.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 30/61 (49%), Positives = 41/61 (67%)
Query: 213 STTKKPRVVWSVELHQQFVSAVNQLG-IDKAVPKRILELMNVPGLTRENVASHLQEINLQ 271
+T KPR+ W+ ELH++FV AV LG +KA PK I+ +M V GLT ++ SHLQ+ L
Sbjct: 19 TTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG 78
Query: 272 K 272
K
Sbjct: 79 K 79
>TIGR_CMR|CHY_1018 [details] [associations]
symbol:CHY_1018 "chemotaxis response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 OMA:PFQAPKV
RefSeq:YP_359865.1 ProteinModelPortal:Q3ADB9 SMR:Q3ADB9
STRING:Q3ADB9 GeneID:3728492 KEGG:chy:CHY_1018 PATRIC:21275169
BioCyc:CHYD246194:GJCN-1017-MONOMER Uniprot:Q3ADB9
Length = 121
Score = 130 (50.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 33/120 (27%), Positives = 66/120 (55%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
RVL+VDD +++ +L + Y V A A+++ +E K DVV D+ MP+MD
Sbjct: 4 RVLIVDDAAFMRMMIKNILVKNGYEVVGEAENGAQAVEMYKELKP--DVVTMDITMPEMD 61
Query: 94 GFKLLEHIG-LEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
G + + I ++ + +I G+ + VM I+ GA D+++KP +++ + ++ +++
Sbjct: 62 GIQAVREIKKIDPNAKIIMCSAMGQQALVMEAIQAGAIDFIVKPFQQDRILQAFEKTLKR 121
>TAIR|locus:2031210 [details] [associations]
symbol:AT1G25550 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010167 "response to nitrate" evidence=RCA] [GO:0015706
"nitrate transport" evidence=RCA] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684 GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 HOGENOM:HOG000237574
ProtClustDB:CLSN2687960 EMBL:AF326890 EMBL:AF339707 EMBL:AF372906
EMBL:BT002674 IPI:IPI00533337 RefSeq:NP_564236.1 UniGene:At.25159
ProteinModelPortal:Q9FPE8 SMR:Q9FPE8 IntAct:Q9FPE8 STRING:Q9FPE8
PRIDE:Q9FPE8 EnsemblPlants:AT1G25550.1 GeneID:839142
KEGG:ath:AT1G25550 TAIR:At1g25550 InParanoid:Q9FPE8 OMA:ECSERTT
PhylomeDB:Q9FPE8 ArrayExpress:Q9FPE8 Genevestigator:Q9FPE8
Uniprot:Q9FPE8
Length = 344
Score = 139 (54.0 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 37/86 (43%), Positives = 50/86 (58%)
Query: 206 ELESDDPS-TTKKPRVVWSVELHQQFVSAVNQLGIDK-AVPKRILELMNVPGLTRENVAS 263
E E S + +K R WS ELH++F+ A+ QLG A PK+I +LM V GLT + V S
Sbjct: 197 EFEEQKQSHSNRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKS 256
Query: 264 HLQEINLQKFRLYLKR-LNGVSQQGG 288
HLQ K+RL+ +R V + GG
Sbjct: 257 HLQ-----KYRLHTRRPATPVVRTGG 277
Score = 54 (24.1 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 148 RKRWNENKEHENSGS--LEETDHHKRGS--DE---IEYASSVNEGTEGTFKAQRKRISAK 200
RK +E+ EH S E T G+ +E I+++S+ ++ T+ +A++ +
Sbjct: 54 RKELSESSEHVGGQSECSERTTSECGGAVFEEFMPIKWSSASSDETDKDEEAEKTEMMTN 113
Query: 201 EEDDGELESDD 211
E +DG+ + D
Sbjct: 114 ENNDGDKKKSD 124
>UNIPROTKB|P0AE67 [details] [associations]
symbol:cheY species:83333 "Escherichia coli K-12"
[GO:0006473 "protein acetylation" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0060286 "flagellar cell motility" evidence=TAS]
[GO:0006935 "chemotaxis" evidence=IEA;IMP;TAS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IMP] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0000287 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000160
PDB:1BDJ PDBsum:1BDJ HOGENOM:HOG000034820 GO:GO:0006473
GO:GO:0060286 PDB:1A0O PDB:1EAY PDB:1FFG PDB:1FFS PDB:1FFW PDB:2LP4
PDBsum:1A0O PDBsum:1EAY PDBsum:1FFG PDBsum:1FFS PDBsum:1FFW
PDBsum:2LP4 EMBL:M13463 EMBL:K02175 PIR:E25195 RefSeq:NP_416396.1
RefSeq:YP_490144.1 PDB:1AB5 PDB:1AB6 PDB:1C4W PDB:1CEY PDB:1CHN
PDB:1CYE PDB:1D4Z PDB:1DJM PDB:1E6K PDB:1E6L PDB:1E6M PDB:1EHC
PDB:1F4V PDB:1FQW PDB:1HEY PDB:1JBE PDB:1KMI PDB:1MIH PDB:1U8T
PDB:1UDR PDB:1VLZ PDB:1YMU PDB:1YMV PDB:1ZDM PDB:2B1J PDB:2ID7
PDB:2ID9 PDB:2IDM PDB:3CHY PDB:3F7N PDB:3FFT PDB:3FFW PDB:3FFX
PDB:3FGZ PDB:3MYY PDB:3OLV PDB:3OLW PDB:3OLX PDB:3OLY PDB:3OO0
PDB:3OO1 PDB:3RVJ PDB:3RVK PDB:3RVL PDB:3RVM PDB:3RVN PDB:3RVO
PDB:3RVP PDB:3RVQ PDB:3RVR PDB:3RVS PDB:5CHY PDB:6CHY PDBsum:1AB5
PDBsum:1AB6 PDBsum:1C4W PDBsum:1CEY PDBsum:1CHN PDBsum:1CYE
PDBsum:1D4Z PDBsum:1DJM PDBsum:1E6K PDBsum:1E6L PDBsum:1E6M
PDBsum:1EHC PDBsum:1F4V PDBsum:1FQW PDBsum:1HEY PDBsum:1JBE
PDBsum:1KMI PDBsum:1MIH PDBsum:1U8T PDBsum:1UDR PDBsum:1VLZ
PDBsum:1YMU PDBsum:1YMV PDBsum:1ZDM PDBsum:2B1J PDBsum:2ID7
PDBsum:2ID9 PDBsum:2IDM PDBsum:3CHY PDBsum:3F7N PDBsum:3FFT
PDBsum:3FFW PDBsum:3FFX PDBsum:3FGZ PDBsum:3MYY PDBsum:3OLV
PDBsum:3OLW PDBsum:3OLX PDBsum:3OLY PDBsum:3OO0 PDBsum:3OO1
PDBsum:3RVJ PDBsum:3RVK PDBsum:3RVL PDBsum:3RVM PDBsum:3RVN
PDBsum:3RVO PDBsum:3RVP PDBsum:3RVQ PDBsum:3RVR PDBsum:3RVS
PDBsum:5CHY PDBsum:6CHY ProteinModelPortal:P0AE67 SMR:P0AE67
DIP:DIP-48237N IntAct:P0AE67 SWISS-2DPAGE:P0AE67 PRIDE:P0AE67
EnsemblBacteria:EBESCT00000000750 EnsemblBacteria:EBESCT00000017790
GeneID:12930559 GeneID:946393 KEGG:ecj:Y75_p1858 KEGG:eco:b1882
PATRIC:32119091 EchoBASE:EB0148 EcoGene:EG10150 KO:K03413
OMA:FGFVISD ProtClustDB:PRK10610 BioCyc:EcoCyc:CHEY-MONOMER
BioCyc:ECOL316407:JW1871-MONOMER EvolutionaryTrace:P0AE67
Genevestigator:P0AE67 Uniprot:P0AE67
Length = 129
Score = 129 (50.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 39/122 (31%), Positives = 65/122 (53%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 143 WQ 144
++
Sbjct: 124 FE 125
>UNIPROTKB|Q8EF67 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
OMA:FDVTEAC RefSeq:NP_717723.1 ProteinModelPortal:Q8EF67
GeneID:1169863 KEGG:son:SO_2120 PATRIC:23523858
ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 129 (50.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 35/119 (29%), Positives = 61/119 (51%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDD +++E L+ Y VT ALD+ ++ FD +L+D +MP MDG
Sbjct: 4 KILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLCSSQR--FDFILTDQNMPRMDG 61
Query: 95 FKLLEHI-GLE--MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147
L++ + G+ M P+I T+ +G GA +++KP ++L I V+
Sbjct: 62 LTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPFDPQKLLAITAKVL 120
>TIGR_CMR|SO_2120 [details] [associations]
symbol:SO_2120 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 OMA:FDVTEAC RefSeq:NP_717723.1
ProteinModelPortal:Q8EF67 GeneID:1169863 KEGG:son:SO_2120
PATRIC:23523858 ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 129 (50.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 35/119 (29%), Positives = 61/119 (51%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDD +++E L+ Y VT ALD+ ++ FD +L+D +MP MDG
Sbjct: 4 KILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLCSSQR--FDFILTDQNMPRMDG 61
Query: 95 FKLLEHI-GLE--MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147
L++ + G+ M P+I T+ +G GA +++KP ++L I V+
Sbjct: 62 LTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPFDPQKLLAITAKVL 120
>TAIR|locus:2119425 [details] [associations]
symbol:UNE16 "unfertilized embryo sac 16" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0009567 "double fertilization forming a
zygote and endosperm" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687 GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0009567
IPI:IPI00657591 RefSeq:NP_001031626.1 UniGene:At.22199
ProteinModelPortal:F4JTR5 SMR:F4JTR5 PRIDE:F4JTR5
EnsemblPlants:AT4G13640.2 GeneID:826998 KEGG:ath:AT4G13640
OMA:LPIDACL PhylomeDB:F4JTR5 Uniprot:F4JTR5
Length = 295
Score = 147 (56.8 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 31/59 (52%), Positives = 40/59 (67%)
Query: 213 STTKKPRVVWSVELHQQFVSAVNQLG-IDKAVPKRILELMNVPGLTRENVASHLQEINL 270
+T KPR+ W+ ELH++FV AV QLG DKA PK I+ M V GLT ++ SHLQ+ L
Sbjct: 33 TTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 91
>UNIPROTKB|E1WEB4 [details] [associations]
symbol:cpxR "Two-component response regulatory protein"
species:216597 "Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 OMA:YQTPVIM EMBL:FQ312003 GenomeReviews:FQ312003_GR
RefSeq:YP_005183876.1 ProteinModelPortal:E1WEB4 IntAct:E1WEB4
PRIDE:E1WEB4 GeneID:11767742 KEGG:sey:SL1344_4008 PATRIC:43194339
Uniprot:E1WEB4
Length = 232
Score = 143 (55.4 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 41/132 (31%), Positives = 69/132 (52%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDDD +L+++L +NV AL++L + D++L DV MP +G
Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDS---IDLLLLDVMMPKKNG 59
Query: 95 FKLLEHIGLEMDLPVIT-DGRVSAVMR--GIRHGACDYLIKPIREEELKNIWQHVVRK-R 150
L+ + PVI R S + R G+ GA DYL KP + EL + ++R+
Sbjct: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119
Query: 151 WNENKEHENSGS 162
W+E ++ ++GS
Sbjct: 120 WSEQQQSSDNGS 131
>UNIPROTKB|P0A5Z6 [details] [associations]
symbol:prrA "Transcriptional regulatory protein PrrA"
species:1773 "Mycobacterium tuberculosis" [GO:0000287 "magnesium
ion binding" evidence=IDA] [GO:0005509 "calcium ion binding"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0044110 "growth involved in
symbiotic interaction" evidence=IDA] [GO:0052572 "response to host
immune response" evidence=IEP] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005829 GO:GO:0005886
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0000287 GO:GO:0003677
GO:GO:0005509 GO:GO:0052572 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 EMBL:BX842574 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815 PIR:D70783
RefSeq:NP_215418.1 RefSeq:NP_335359.1 RefSeq:YP_006514256.1
PDB:1YS6 PDB:1YS7 PDBsum:1YS6 PDBsum:1YS7 ProteinModelPortal:P0A5Z6
SMR:P0A5Z6 DIP:DIP-29035N PhosSite:P12061589
EnsemblBacteria:EBMYCT00000002159 EnsemblBacteria:EBMYCT00000072508
GeneID:13318807 GeneID:885209 GeneID:926241 KEGG:mtc:MT0926
KEGG:mtu:Rv0903c KEGG:mtv:RVBD_0903c PATRIC:18123784
TubercuList:Rv0903c KO:K07671 OMA:VDDRISG ProtClustDB:CLSK790822
EvolutionaryTrace:P0A5Z6 GO:GO:0044110 Uniprot:P0A5Z6
Length = 233
Score = 143 (55.4 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 43/120 (35%), Positives = 64/120 (53%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
RVLVVDDD L LE+ LR + V T A AL E + D ++ D++MP +DG
Sbjct: 9 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRP--DAIVLDINMPVLDG 66
Query: 95 FKLLEHI-GLEMDLPV-ITDGRVSAVMR--GIRHGACDYLIKPIREEELKNIWQHVVRKR 150
++ + ++ D+PV + R S R G+ GA DYL+KP EL + ++R+R
Sbjct: 67 VSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126
>TAIR|locus:2063141 [details] [associations]
symbol:AT2G40260 "AT2G40260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC007020
HOGENOM:HOG000090767 IPI:IPI00530168 PIR:C84827 RefSeq:NP_181555.1
UniGene:At.53083 ProteinModelPortal:Q9SIZ5 SMR:Q9SIZ5 PRIDE:Q9SIZ5
EnsemblPlants:AT2G40260.1 GeneID:818618 KEGG:ath:AT2G40260
TAIR:At2g40260 eggNOG:NOG267620 InParanoid:Q9SIZ5 OMA:FRINSHE
PhylomeDB:Q9SIZ5 ProtClustDB:CLSN2913060 ArrayExpress:Q9SIZ5
Genevestigator:Q9SIZ5 Uniprot:Q9SIZ5
Length = 410
Score = 149 (57.5 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 43/121 (35%), Positives = 65/121 (53%)
Query: 153 ENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGELESDDP 212
E+K+ E+ EE D +R D+ ++S E + Q K+ + G + +
Sbjct: 27 EDKDEEDDEEGEE-DEEERSGDQSPSSNSYEEESGSHHHDQNKK------NGGSVRPYNR 79
Query: 213 STTKKPRVVWSVELHQQFVSAVNQLG-IDKAVPKRILELMNVPGLTRENVASHLQEINLQ 271
S T PR+ W+ ELH F+ AV +LG D+A PK +L+LMNV GL+ +V SHLQ +
Sbjct: 80 SKT--PRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRSK 137
Query: 272 K 272
K
Sbjct: 138 K 138
>TIGR_CMR|SO_3209 [details] [associations]
symbol:SO_3209 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:GHYDFLV
HSSP:P06143 RefSeq:NP_718764.1 ProteinModelPortal:Q8ECD4 SMR:Q8ECD4
GeneID:1170902 KEGG:son:SO_3209 PATRIC:23526102
ProtClustDB:CLSK907053 Uniprot:Q8ECD4
Length = 127
Score = 127 (49.8 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 36/114 (31%), Positives = 60/114 (52%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTT-CSQAAVALDILRERKGCFDVVLSDVHMPDM 92
+++L+VDD T RI++ +LR +N T + AL +L+ KG FD V++D +MP M
Sbjct: 5 MKILIVDDFSTMRRIIKNLLRDLGFNNTQEADDGSTALPMLQ--KGDFDFVVTDWNMPGM 62
Query: 93 DGFKLLEHIGLE---MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELK 140
G LL+ I + LPV+ + + ++ + G Y++KP LK
Sbjct: 63 QGIDLLKAIRADDSLKHLPVLMVTAEAKREQIIAAAQAGVNGYVVKPFTAATLK 116
>TIGR_CMR|SPO_1679 [details] [associations]
symbol:SPO_1679 "DNA-binding response regulator CtrA"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 RefSeq:YP_166918.1
ProteinModelPortal:Q5LST7 GeneID:3194546 KEGG:sil:SPO1679
PATRIC:23376683 KO:K13584 OMA:PDMNGHE ProtClustDB:CLSK863578
Uniprot:Q5LST7
Length = 238
Score = 142 (55.0 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 38/131 (29%), Positives = 68/131 (51%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+R+L+V+DD T + +E ML NV +D+ + +D++L D+++PDM+
Sbjct: 1 MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAKLYD--YDLILLDINLPDMN 58
Query: 94 GFKLLEHIGLE-MDLPV-ITDG--RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
G ++L + + ++ P+ I G + ++G GA DYL KP EEL ++R+
Sbjct: 59 GHEVLRQLRMSRIETPILILSGVDDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRR 118
Query: 150 RWNENKEHENS 160
+K H S
Sbjct: 119 ----SKGHSQS 125
>TAIR|locus:2045761 [details] [associations]
symbol:AT2G01060 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0006499 "N-terminal protein myristoylation"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC006837
EMBL:AF370550 EMBL:AY084725 EMBL:BT000013 IPI:IPI00544604
PIR:B84420 RefSeq:NP_178216.1 UniGene:At.24449
ProteinModelPortal:Q9SJW0 SMR:Q9SJW0 EnsemblPlants:AT2G01060.1
GeneID:814630 KEGG:ath:AT2G01060 TAIR:At2g01060 eggNOG:NOG329415
InParanoid:Q9SJW0 OMA:TNELHER PhylomeDB:Q9SJW0
ProtClustDB:CLSN2683513 ArrayExpress:Q9SJW0 Genevestigator:Q9SJW0
Uniprot:Q9SJW0
Length = 286
Score = 144 (55.7 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 35/74 (47%), Positives = 46/74 (62%)
Query: 201 EEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLG-IDKAVPKRILELMNVPGLTRE 259
E D+G S S K R+ W+ ELH++FV AV QLG D+A PK +L +M V GLT
Sbjct: 2 EADNGGPNSSHAS---KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIY 58
Query: 260 NVASHLQEINLQKF 273
+V SHLQ+ L K+
Sbjct: 59 HVKSHLQKYRLAKY 72
>TIGR_CMR|ECH_1012 [details] [associations]
symbol:ECH_1012 "DNA-binding response regulator"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_507798.1 ProteinModelPortal:Q2GFI5
STRING:Q2GFI5 GeneID:3927952 KEGG:ech:ECH_1012 PATRIC:20577398
OMA:GISEMDS ProtClustDB:CLSK749538
BioCyc:ECHA205920:GJNR-1015-MONOMER Uniprot:Q2GFI5
Length = 265
Score = 143 (55.4 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 48/192 (25%), Positives = 90/192 (46%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-M 92
+R+L+++DDI C + +E L + T + A + + +DVV+ D+H P +
Sbjct: 1 MRILLIEDDIACAKAVEASLSSEGHFCETMTSAQDCYGSIIPKNDDYDVVILDIHFPGKI 60
Query: 93 DGFKLLEHIGLE-MDLPVITDGRVSAV---MRGIRHGACDYLIKPIREEELKNIWQHVVR 148
DG+ +L + + +PV+ +S+V ++G+ +GA DY+ KP + EL + +VR
Sbjct: 61 DGYDILVKLRESGIKVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIVR 120
Query: 149 KRWNENKEHENSGSLEETDHHK--RGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGE 206
+ + G++ HK + EI + + G ++ + KE
Sbjct: 121 RTRGHPESIVRVGNIAINLDHKCVECNGEIVHLTKKEYGMIELLSSRLGTVLTKEMFLSH 180
Query: 207 L--ESDDPSTTK 216
L E D+PS K
Sbjct: 181 LYRELDEPSDDK 192
>TIGR_CMR|GSU_0372 [details] [associations]
symbol:GSU_0372 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 PROSITE:PS00675
PROSITE:PS00676 HSSP:P10957 RefSeq:NP_951431.2 GeneID:2686674
KEGG:gsu:GSU0372 PATRIC:22023488 ProtClustDB:CLSK827784
BioCyc:GSUL243231:GH27-388-MONOMER Uniprot:Q74G75
Length = 455
Score = 148 (57.2 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 49/139 (35%), Positives = 74/139 (53%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L+VDD+ IL+ +L Y TT + AL +L ER+ FDV+L+D+ M M G
Sbjct: 5 ILIVDDERGQREILQTILEGERYETTTAAGGQEALALLDERE--FDVILTDLKMQGMSGM 62
Query: 96 KLLEHIGLEMD-----LPVITDGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRK 149
+LLE + L D + + G V + + ++ GA DYL KP+ R+ L + + V R
Sbjct: 63 ELLERL-LAADPQQCIIMMTAHGTVDSAVEAMKKGAFDYLEKPLERDTLLLTLRRAVERV 121
Query: 150 RW-NENKE-HENSGSLEET 166
R EN+ H+ LEET
Sbjct: 122 RLLKENRALHKK---LEET 137
>TAIR|locus:2170199 [details] [associations]
symbol:AT5G06800 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AK226644 IPI:IPI00528070
RefSeq:NP_196298.2 UniGene:At.50439 ProteinModelPortal:Q0WVU3
SMR:Q0WVU3 PRIDE:Q0WVU3 EnsemblPlants:AT5G06800.1 GeneID:830570
KEGG:ath:AT5G06800 TAIR:At5g06800 eggNOG:NOG298644
HOGENOM:HOG000241107 InParanoid:Q0WVU3 OMA:MDNINFE
ProtClustDB:CLSN2918619 Genevestigator:Q0WVU3 Uniprot:Q0WVU3
Length = 375
Score = 146 (56.5 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 50/172 (29%), Positives = 80/172 (46%)
Query: 131 IKPIREEELKNIWQHVVRKRWNENKEHENSGSLE-ETDHHKRGSDEIEYASS----VN-E 184
++P+ ++ +K ++Q + S SL E H + Y++S +N
Sbjct: 100 MQPLPDQYMKPLYQRSCSNDFAATNASSASYSLSFEASHDPQELCRRTYSNSNVTHLNFT 159
Query: 185 GTEGTFKAQRKRISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLG-IDKAV 243
++ K R S+ S P+ K R+ W+ +LH++FV VN+LG DKA
Sbjct: 160 SSQHQPKQSHPRFSSPPSFSIHGGSMAPNCVNKTRIRWTQDLHEKFVECVNRLGGADKAT 219
Query: 244 PKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQGGITNSFCA 295
PK IL+ M+ GLT +V SHLQ+ + K Y+ SQ+G CA
Sbjct: 220 PKAILKRMDSDGLTIFHVKSHLQKYRIAK---YMPE----SQEGKFEKRACA 264
>TIGR_CMR|CPS_4272 [details] [associations]
symbol:CPS_4272 "sigma-54 dependent response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025944 PROSITE:PS00688 KO:K07715
RefSeq:YP_270922.1 ProteinModelPortal:Q47WA0 STRING:Q47WA0
GeneID:3519601 KEGG:cps:CPS_4272 PATRIC:21471409 OMA:DASVFIQ
BioCyc:CPSY167879:GI48-4282-MONOMER Uniprot:Q47WA0
Length = 457
Score = 147 (56.8 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 40/134 (29%), Positives = 69/134 (51%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDDD + LR+L L Y+V + + A +AL R + VV+SD+ M MDG
Sbjct: 14 KILIVDDDPSLLRLLGIRLSAAGYDVESAANAKIALG--RLQNFIPQVVISDLRMEGMDG 71
Query: 95 FKLLEHIGLEM-DLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150
L E I ++ ++PV+ G + + + G +L KP +EL + + +R +
Sbjct: 72 MALFEQIRIQHPNIPVVIMTAHGTIPDAINATKQGVFSFLTKPFESQELLDTVEQAIRLQ 131
Query: 151 WNENKEHENSGSLE 164
++N E +G E
Sbjct: 132 PSQN---EKTGETE 142
>UNIPROTKB|Q48GG3 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_275520.1
ProteinModelPortal:Q48GG3 SMR:Q48GG3 STRING:Q48GG3 GeneID:3558182
KEGG:psp:PSPPH_3362 PATRIC:19976130 OMA:GHYDFLV
ProtClustDB:CLSK642753 Uniprot:Q48GG3
Length = 124
Score = 123 (48.4 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 32/114 (28%), Positives = 58/114 (50%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
+++L+VDD T RI++ +LR + N + AL +L+ G FD +++D +MP M
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTSEADDGLTALPMLQS--GAFDFLVTDWNMPGM 58
Query: 93 DGFKLLEHIGLE---MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELK 140
G LL + + LPV+ + + ++ + G Y++KP + LK
Sbjct: 59 TGIDLLRQVRADERLKSLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALK 112
>TIGR_CMR|NSE_0512 [details] [associations]
symbol:NSE_0512 "response regulator/GGDEF domain protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG3706 EMBL:CP000237
GenomeReviews:CP000237_GR KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_506396.1 ProteinModelPortal:Q2GDQ0
STRING:Q2GDQ0 GeneID:3931788 KEGG:nse:NSE_0512 PATRIC:22681073
OMA:TELGIND BioCyc:NSEN222891:GHFU-532-MONOMER Uniprot:Q2GDQ0
Length = 456
Score = 145 (56.1 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 36/107 (33%), Positives = 61/107 (57%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+LVVDD + ++ILE L Y V T S A+++ ++ + DV+L DV MP+MDGF
Sbjct: 5 ILVVDDIPSNIKILEIKLTAKYYQVITASSGIAAIELAKQHQP--DVILLDVMMPEMDGF 62
Query: 96 KLLEHIGLE---MDLPVITDGRVSAV---MRGIRHGACDYLIKPIRE 136
+ + + M +PVI ++ + + G+ GA D+L+KP ++
Sbjct: 63 ETCRRLKSDYATMHIPVIIVTALNDIENKVEGLNSGADDFLVKPAKD 109
>TIGR_CMR|BA_1119 [details] [associations]
symbol:BA_1119 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_843605.1 RefSeq:YP_017739.1 RefSeq:YP_027312.1
ProteinModelPortal:Q81TY2 DNASU:1089077
EnsemblBacteria:EBBACT00000010696 EnsemblBacteria:EBBACT00000017772
EnsemblBacteria:EBBACT00000019871 GeneID:1089077 GeneID:2819546
GeneID:2850009 KEGG:ban:BA_1119 KEGG:bar:GBAA_1119 KEGG:bat:BAS1040
OMA:EIDQHSA ProtClustDB:CLSK916099
BioCyc:BANT260799:GJAJ-1116-MONOMER
BioCyc:BANT261594:GJ7F-1167-MONOMER Uniprot:Q81TY2
Length = 234
Score = 138 (53.6 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 38/143 (26%), Positives = 73/143 (51%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
+L+VDD+ L++L +L + ++ +TT + A +AL + ++ +D+++ DV +P G
Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQND--YDLIILDVMLPGQSG 63
Query: 95 FKLLEHIGLEMDLPVI-TDGRVSAV--MRGIRHGACDYLIKPIREEEL-----KNIWQHV 146
F + I + D P+ + S + + G HGA DY+ KP E+ + +H+
Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123
Query: 147 VRKRWNENKEHENSGSLEETDHH 169
+ +E K H +S E D +
Sbjct: 124 KQVMPHEQKAHSSSFGRFEIDRY 146
>TIGR_CMR|SPO_2629 [details] [associations]
symbol:SPO_2629 "C4-dicarboxylate transport
transcriptional regulatory protein" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489 KO:K10126
RefSeq:YP_167839.1 ProteinModelPortal:Q5LQ67 DNASU:3194353
GeneID:3194353 KEGG:sil:SPO2629 PATRIC:23378667 OMA:TFYDKLA
ProtClustDB:CLSK751600 Uniprot:Q5LQ67
Length = 409
Score = 144 (55.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 56/197 (28%), Positives = 85/197 (43%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFD-VVLSDVHMPDMD 93
+VL+VDDD L Q L Y V T A D + FD V++SD+ MP D
Sbjct: 4 KVLLVDDDAAVREALGQTLDLADYAVQTAGSFVAAKDHIT---ATFDGVIVSDIRMPGRD 60
Query: 94 GFKLLEHI-GLEMDLPVIT---DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
GF LL + ++ DLPVI +G + +R + GA D+L KP +L + +
Sbjct: 61 GFHLLSYAQDIDPDLPVILLTGEGDIPMAVRAMGDGAFDFLEKPCAAADLLAVIARAMAA 120
Query: 150 RWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGELES 209
R + ET KR D + A+ + GT +A R+R+ E+
Sbjct: 121 R----------AQVLETRALKRQLDRGDPAARMLFGTSARAEALRERVRGVAPTGAEVLV 170
Query: 210 DDPSTTKKPRVVWSVEL 226
P+ + +V + L
Sbjct: 171 TGPAGSGISKVAEVIHL 187
>UNIPROTKB|Q4KG39 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:220664
"Pseudomonas protegens Pf-5" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0005622 GO:GO:0006935
EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 OMA:FGFVISD RefSeq:YP_258794.1
ProteinModelPortal:Q4KG39 SMR:Q4KG39 STRING:Q4KG39 GeneID:3477601
KEGG:pfl:PFL_1668 PATRIC:19872565 ProtClustDB:CLSK715044
BioCyc:PFLU220664:GIX8-1676-MONOMER Uniprot:Q4KG39
Length = 123
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 31/114 (27%), Positives = 56/114 (49%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
+++L+VDD T RI++ +LR + N A+ +L G D +++D +MP M
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTVEADDGTTAIPVLNS--GSIDFLVTDWNMPGM 58
Query: 93 DGFKLLEHIGLE---MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELK 140
G LL H+ + LPV+ + + ++ + G Y++KP + LK
Sbjct: 59 TGIDLLRHVRADEKLKHLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALK 112
>TIGR_CMR|CPS_1520 [details] [associations]
symbol:CPS_1520 "chemotaxis protein CheY" species:167879
"Colwellia psychrerythraea 34H" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 OMA:LEANDIY
KO:K03413 RefSeq:YP_268262.1 ProteinModelPortal:Q485K3 SMR:Q485K3
STRING:Q485K3 GeneID:3522501 KEGG:cps:CPS_1520 PATRIC:21466247
BioCyc:CPSY167879:GI48-1601-MONOMER Uniprot:Q485K3
Length = 127
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 36/114 (31%), Positives = 59/114 (51%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
++VLVVDD T RI++ +LR + N+ AL +L+ G FD V++D +MP M
Sbjct: 5 MKVLVVDDFSTMRRIVKNLLRDLGFTNIQEADDGNTALPMLQG--GDFDFVVTDWNMPGM 62
Query: 93 DGFKLLEHIGLEMDL---PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELK 140
G LL+ I + +L PV+ + + ++ + G Y++KP LK
Sbjct: 63 QGIDLLKAIRADANLSHIPVLLITAEAKKEQIIMAAQAGVNGYIVKPFTAATLK 116
>TAIR|locus:2063746 [details] [associations]
symbol:AT2G03500 "AT2G03500" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC006284
HOGENOM:HOG000237574 EMBL:AY060559 EMBL:AY133630 EMBL:AK221662
IPI:IPI00544167 PIR:B84449 RefSeq:NP_027544.1 UniGene:At.27373
ProteinModelPortal:Q9ZQ85 SMR:Q9ZQ85 IntAct:Q9ZQ85
EnsemblPlants:AT2G03500.1 GeneID:814878 KEGG:ath:AT2G03500
TAIR:At2g03500 eggNOG:NOG301728 InParanoid:Q9ZQ85 OMA:QSYSMLL
PhylomeDB:Q9ZQ85 ProtClustDB:CLSN2687945 ArrayExpress:Q9ZQ85
Genevestigator:Q9ZQ85 Uniprot:Q9ZQ85
Length = 432
Score = 144 (55.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 44/126 (34%), Positives = 63/126 (50%)
Query: 173 SDEIEYASSVNEGTEGTFKAQRKRISA----KEEDDGELESDDPSTT-----KKPRVVWS 223
S E++ S NE T G I+ ++ S+ S+T +K R WS
Sbjct: 180 STEVKRVSPTNEHTNGQDGNDESMINNDNNYNNNNNNNSNSNGVSSTTSQSNRKARRCWS 239
Query: 224 VELHQQFVSAVNQLGIDK-AVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNG 282
+LH++FV A+ LG + A PK+I ELM V GLT + V SHLQ K+RL+ +R +
Sbjct: 240 PDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQ-----KYRLHTRRPSP 294
Query: 283 VSQQGG 288
Q G
Sbjct: 295 SPQTSG 300
>TAIR|locus:2157146 [details] [associations]
symbol:AT5G45580 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002688 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00931042
RefSeq:NP_199371.2 UniGene:At.50506 ProteinModelPortal:F4KEK2
SMR:F4KEK2 PRIDE:F4KEK2 DNASU:834596 EnsemblPlants:AT5G45580.1
GeneID:834596 KEGG:ath:AT5G45580 OMA:YQIEVQR Uniprot:F4KEK2
Length = 264
Score = 139 (54.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 217 KPRVVWSVELHQQFVSAVNQLG-IDKAVPKRILELMNVPGLTRENVASHLQEINL 270
KPR+ W+ +LH +FV AV +LG DKA PK +L+LM + GLT ++ SHLQ+ L
Sbjct: 7 KPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRL 61
>TIGR_CMR|GSU_0403 [details] [associations]
symbol:GSU_0403 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_951462.1 ProteinModelPortal:Q74G46 GeneID:2685717
KEGG:gsu:GSU0403 PATRIC:22023550 OMA:MEGKSID ProtClustDB:CLSK827806
BioCyc:GSUL243231:GH27-435-MONOMER Uniprot:Q74G46
Length = 120
Score = 121 (47.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 33/109 (30%), Positives = 57/109 (52%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKG-CFDVVLSDVHMPDMDG 94
VL+VDD T +I+ + LR+ V +A ++ L G D++LSD++MP+MDG
Sbjct: 4 VLIVDDSSTMRKIISRSLRQAGLPVDEIFEAGDGIEGLNVLSGKSVDLILSDINMPNMDG 63
Query: 95 FKLLEHI---GLEMDLPVIT-DGRVSAVMRGIRHGACDYLIKPIREEEL 139
+ ++ G + + +IT +G + I GA D + KP ++L
Sbjct: 64 LEFIKQARANGHKAPIVMITTEGGEDILKEAISSGASDSIKKPFTPDQL 112
>TAIR|locus:2051572 [details] [associations]
symbol:AT2G06020 "AT2G06020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR006447
TIGRFAMs:TIGR01557 EMBL:AC006413 IPI:IPI00525998 PIR:C84474
RefSeq:NP_178659.1 UniGene:At.52657 ProteinModelPortal:Q9ZPZ8
SMR:Q9ZPZ8 EnsemblPlants:AT2G06020.1 GeneID:815156
KEGG:ath:AT2G06020 TAIR:At2g06020 eggNOG:NOG275517
HOGENOM:HOG000154034 OMA:SKITPCI PhylomeDB:Q9ZPZ8
ProtClustDB:CLSN2912993 ArrayExpress:Q9ZPZ8 Genevestigator:Q9ZPZ8
Uniprot:Q9ZPZ8
Length = 301
Score = 140 (54.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 56/201 (27%), Positives = 89/201 (44%)
Query: 148 RKRWNENKEHENSGSLEETDHHKRGS-----DEIEYA-----SSVNEGTEGTFKAQRKRI 197
+++ NE E + S H K+ S EIE + NE E K +++
Sbjct: 4 QEKGNEVVTFEENPSTYVHHHTKKASMVLSEQEIEVILQSNKETYNEKLEKNTKENAEKV 63
Query: 198 SAKEEDDGELESDDP----STTKKPRVVWSVELHQQFVSAVNQLG-IDKAVPKRILELMN 252
EE +G P ++ +K R+ WS +LH FV+AV +LG +KA PK + E M
Sbjct: 64 GI-EEGNGSSSKITPCIFYTSDEKARLRWSSDLHDCFVNAVEKLGGPNKATPKSVKEAME 122
Query: 253 VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDIQ 312
V G+ +V SHLQ+ L K + V Q + + ++ N + +
Sbjct: 123 VEGIALHHVKSHLQKFRLGKCNIRGGTNQYVRQSQSMPHKSQQQLQLNNDCVNHDSY-CN 181
Query: 313 ALAASGQIPPQTLAALHAELL 333
A S +PP T+ +LH + L
Sbjct: 182 ATFLSVTVPP-TIDSLHQDTL 201
>UNIPROTKB|P0AEC5 [details] [associations]
symbol:barA species:83333 "Escherichia coli K-12"
[GO:0009927 "histidine phosphotransfer kinase activity"
evidence=IDA] [GO:0046777 "protein autophosphorylation"
evidence=IDA] [GO:0006468 "protein phosphorylation" evidence=IDA]
[GO:0042542 "response to hydrogen peroxide" evidence=IMP]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0023014 "signal transduction by phosphorylation"
evidence=IEA;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0071310 "cellular response to organic substance"
evidence=IEP] [GO:0016868 "intramolecular transferase activity,
phosphotransferases" evidence=ISS] [GO:0005887 "integral to plasma
membrane" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA;IDA]
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA;IDA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0006351 GO:GO:0005622
GO:GO:0042542 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 GO:GO:0009927 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 EMBL:D10888 EMBL:U29580
PIR:S20550 RefSeq:NP_417266.1 RefSeq:YP_490994.1
ProteinModelPortal:P0AEC5 SMR:P0AEC5 DIP:DIP-47932N IntAct:P0AEC5
MINT:MINT-1307958 EnsemblBacteria:EBESCT00000000619
EnsemblBacteria:EBESCT00000017432 GeneID:12933292 GeneID:947255
KEGG:ecj:Y75_p2723 KEGG:eco:b2786 PATRIC:32120988 EchoBASE:EB1341
EcoGene:EG11367 HOGENOM:HOG000272329 KO:K07678 OMA:ANQVISQ
ProtClustDB:PRK11107 BioCyc:EcoCyc:BARA-MONOMER
BioCyc:ECOL316407:JW2757-MONOMER Genevestigator:P0AEC5
GO:GO:0071310 InterPro:IPR019247 Pfam:PF09984 Uniprot:P0AEC5
Length = 918
Score = 147 (56.8 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 41/126 (32%), Positives = 65/126 (51%)
Query: 26 VPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85
V D+ + V+ VDD+ L+++ +L + +V C A++ R ++ FD++L
Sbjct: 660 VTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVE--RAKQMPFDLILM 717
Query: 86 DVHMPDMDGFK---LLEHIGLEMDLPVITDGRVSA-VMRGIRH-----GACDYLIKPIRE 136
D+ MPDMDG + L+ + + PVI V+A M G + G DYL KPI E
Sbjct: 718 DIQMPDMDGIRACELIHQLPHQQQTPVIA---VTAHAMAGQKEKLLGAGMSDYLAKPIEE 774
Query: 137 EELKNI 142
E L N+
Sbjct: 775 ERLHNL 780
>TIGR_CMR|BA_3900 [details] [associations]
symbol:BA_3900 "lantibiotic biosynthesis DNA-binding
response regulator, putative" species:198094 "Bacillus anthracis
str. Ames" [GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0017000 "antibiotic biosynthetic process" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:Q9WYN0 RefSeq:NP_846147.1
RefSeq:YP_020538.1 RefSeq:YP_029866.1 ProteinModelPortal:Q81WR8
DNASU:1087972 EnsemblBacteria:EBBACT00000012233
EnsemblBacteria:EBBACT00000017950 EnsemblBacteria:EBBACT00000020089
GeneID:1087972 GeneID:2814840 GeneID:2849516 KEGG:ban:BA_3900
KEGG:bar:GBAA_3900 KEGG:bat:BAS3613 OMA:TAIVEHI
ProtClustDB:CLSK907876 BioCyc:BANT260799:GJAJ-3672-MONOMER
BioCyc:BANT261594:GJ7F-3789-MONOMER Uniprot:Q81WR8
Length = 220
Score = 135 (52.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 43/139 (30%), Positives = 72/139 (51%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+L +DD+ L I++ L + + VT S L I +E+ +D++L DV MP++DG
Sbjct: 3 RILAIDDEDGILYIIKSALEKEGHEVTAVSNP---LTIPKEKFCHYDLILLDVMMPEIDG 59
Query: 95 FKLLEHIGLEMDLPVI--TDGRVSA-VMRGIRHGACDYLIKPIREEELK-NIWQHVVRKR 150
F L + I +D P++ T + ++ G+ G DY+ KP EL+ + HV R
Sbjct: 60 FTLCKEIRDFVDSPIVFLTAKTMEKDLITGLSLGGDDYITKPFGIGELRARVSAHVRR-- 117
Query: 151 WNENKEHENSGSLEETDHH 169
E++E +N+ L H
Sbjct: 118 --EHREKQNAFFLSGLTFH 134
>TAIR|locus:2139865 [details] [associations]
symbol:PHR1 "phosphate starvation response 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016036 "cellular response to phosphate starvation"
evidence=IMP] [GO:0055063 "sulfate ion homeostasis" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IEP] [GO:0071486 "cellular
response to high light intensity" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0016036 HSSP:O49397
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0071486
HOGENOM:HOG000064669 EMBL:AY081290 EMBL:BT002187 EMBL:AJ310799
IPI:IPI00520685 RefSeq:NP_194590.2 UniGene:At.4525
ProteinModelPortal:Q94CL7 SMR:Q94CL7 PaxDb:Q94CL7 PRIDE:Q94CL7
EnsemblPlants:AT4G28610.1 GeneID:828979 KEGG:ath:AT4G28610
TAIR:At4g28610 eggNOG:NOG275307 InParanoid:Q94CL7 OMA:EKQCKSG
PhylomeDB:Q94CL7 ProtClustDB:CLSN2915055 Genevestigator:Q94CL7
GO:GO:0055063 Uniprot:Q94CL7
Length = 409
Score = 142 (55.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 209 SDDPSTTKKPRVVWSVELHQQFVSAVNQLG-IDKAVPKRILELMNVPGLTRENVASHLQE 267
S+ + T K R+ W+ ELH+ FV AVN LG ++A PK +L++M V GLT +V SHLQ+
Sbjct: 217 SNSNNGTGKARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQK 276
Query: 268 INLQKFR 274
++R
Sbjct: 277 YRTARYR 283
>TIGR_CMR|BA_0585 [details] [associations]
symbol:BA_0585 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_843119.1
RefSeq:YP_017209.1 RefSeq:YP_026832.1 ProteinModelPortal:Q81VB2
DNASU:1087912 EnsemblBacteria:EBBACT00000008912
EnsemblBacteria:EBBACT00000015521 EnsemblBacteria:EBBACT00000021979
GeneID:1087912 GeneID:2818661 GeneID:2851974 KEGG:ban:BA_0585
KEGG:bar:GBAA_0585 KEGG:bat:BAS0554 OMA:YQTDIEY
ProtClustDB:CLSK2305400 BioCyc:BANT260799:GJAJ-614-MONOMER
BioCyc:BANT261594:GJ7F-640-MONOMER Uniprot:Q81VB2
Length = 223
Score = 135 (52.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 43/147 (29%), Positives = 74/147 (50%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILR--ERKGCFDVVLSDVHMPD 91
+++L+VDD+ LR+L+ L Y C +A L+ L+ E+K FD++L DV MP+
Sbjct: 2 VKILLVDDEERMLRLLDLFLSPRGY---FCMKATSGLEALKLIEQKD-FDIILLDVMMPN 57
Query: 92 MDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148
MDG+ I ++P+I + +++G+ GA DY+ KP E L + ++R
Sbjct: 58 MDGWDTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117
Query: 149 KRWNENKEHENSGSLEETDHHKRGSDE 175
+ + N ++T H DE
Sbjct: 118 RTKKDGFVSFNGIEWDKTKHTVTVYDE 144
>TIGR_CMR|APH_1099 [details] [associations]
symbol:APH_1099 "DNA-binding response regulator"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 ProtClustDB:CLSK749538 RefSeq:YP_505647.1
ProteinModelPortal:Q2GJ04 STRING:Q2GJ04 GeneID:3930636
KEGG:aph:APH_1099 PATRIC:20950956 OMA:ETMASAQ
BioCyc:APHA212042:GHPM-1105-MONOMER Uniprot:Q2GJ04
Length = 276
Score = 138 (53.6 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 48/192 (25%), Positives = 89/192 (46%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-M 92
+R+L+++DD+ C + +E L + T + A + + +DVV+ D+H P +
Sbjct: 1 MRILLIEDDVACAKAVEASLSAEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKI 60
Query: 93 DGFKLLEHIGLE-MDLPVITDGRVSAV---MRGIRHGACDYLIKPIREEELKNIWQHVVR 148
DG+ +L + + +PV+ +S+V ++G+ +GA DY+ KP + EL + VVR
Sbjct: 61 DGYDILVKLRESGIRVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAVVR 120
Query: 149 KRWNENKEHENSGSLEETDHHKRGS--DEIEYASSVNEGTEGTFKAQRKRISAKEEDDGE 206
+ + G++ HK S I + + G ++ + KE
Sbjct: 121 RTRGHPESIVRVGNISINLDHKCVSCNGNIIHLTKKEYGMIELLSSRLGTVLTKEMFLSH 180
Query: 207 L--ESDDPSTTK 216
L E D+PS K
Sbjct: 181 LYRELDEPSDDK 192
>TIGR_CMR|BA_0651 [details] [associations]
symbol:BA_0651 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_843182.1
RefSeq:YP_017279.1 RefSeq:YP_026895.1 ProteinModelPortal:Q81V49
DNASU:1088070 EnsemblBacteria:EBBACT00000008363
EnsemblBacteria:EBBACT00000015665 EnsemblBacteria:EBBACT00000022532
GeneID:1088070 GeneID:2814886 GeneID:2850289 KEGG:ban:BA_0651
KEGG:bar:GBAA_0651 KEGG:bat:BAS0618 OMA:LWDEAKH
ProtClustDB:CLSK915873 BioCyc:BANT260799:GJAJ-677-MONOMER
BioCyc:BANT261594:GJ7F-704-MONOMER Uniprot:Q81V49
Length = 225
Score = 135 (52.6 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 42/138 (30%), Positives = 69/138 (50%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L+VDD+ L +L L YN A+ + + F +L D+ MP MDG+
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQN--FKFILLDIMMPKMDGW 61
Query: 96 KLLEHIGLEMDLPVIT----DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151
+ + I ++P+I D + V++G++ GA DY+ KP EEEL + V+R R
Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTID-VVQGLKLGADDYVTKPFHEEELFARIEAVLR-RT 119
Query: 152 NENKEHENSGSL-EETDH 168
N++ + + G L E H
Sbjct: 120 NQHAQIQYHGILWNEAKH 137
>TAIR|locus:2026863 [details] [associations]
symbol:AT1G68670 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009737 "response to abscisic acid stimulus" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GO:GO:0009737 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY063886
EMBL:AY091241 IPI:IPI00541260 RefSeq:NP_564938.1 UniGene:At.27154
ProteinModelPortal:Q8VZS3 SMR:Q8VZS3 IntAct:Q8VZS3
EnsemblPlants:AT1G68670.1 GeneID:843197 KEGG:ath:AT1G68670
TAIR:At1g68670 HOGENOM:HOG000237574 InParanoid:Q8VZS3 OMA:EHESSPE
PhylomeDB:Q8VZS3 ProtClustDB:CLSN2687960 ArrayExpress:Q8VZS3
Genevestigator:Q8VZS3 Uniprot:Q8VZS3
Length = 354
Score = 140 (54.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 39/103 (37%), Positives = 58/103 (56%)
Query: 179 ASSVNEGTEGTFKAQRKRISAKEEDDG-ELESDDPSTTKKPRVVWSVELHQQFVSAVNQL 237
A++ + TE T + I A +E+ E + T +K R WS ELH++F++A+ QL
Sbjct: 177 ATTTSSTTE-TCGGKSDLIKAGDEERRIEQQQSQSHTHRKQRRCWSPELHRRFLNALQQL 235
Query: 238 GIDK-AVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKR 279
G A PK+I + M V GLT + V SHLQ K+RL+ +R
Sbjct: 236 GGSHVATPKQIRDHMKVDGLTNDEVKSHLQ-----KYRLHTRR 273
>UNIPROTKB|Q9KS62 [details] [associations]
symbol:VC_1398 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:AGANFYL HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1
ProteinModelPortal:Q9KS62 DNASU:2614030 GeneID:2614030
KEGG:vch:VC1398 PATRIC:20081860 ProtClustDB:CLSK794124
Uniprot:Q9KS62
Length = 124
Score = 119 (46.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 36/112 (32%), Positives = 55/112 (49%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
+V+VVDD T + +L + S AL+ E D+ L D++MP MDG
Sbjct: 4 KVMVVDDASTVRMYHKALLEEIGIFILEASNGVEALERALEMP--VDLFLVDINMPKMDG 61
Query: 95 FKLLEHIGLEMDL---PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELK 140
F L+ I +L P + T+ + S +GI GA Y++KP+ EEL+
Sbjct: 62 FTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQ 113
>TIGR_CMR|VC_1398 [details] [associations]
symbol:VC_1398 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:AGANFYL
HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1 ProteinModelPortal:Q9KS62
DNASU:2614030 GeneID:2614030 KEGG:vch:VC1398 PATRIC:20081860
ProtClustDB:CLSK794124 Uniprot:Q9KS62
Length = 124
Score = 119 (46.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 36/112 (32%), Positives = 55/112 (49%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
+V+VVDD T + +L + S AL+ E D+ L D++MP MDG
Sbjct: 4 KVMVVDDASTVRMYHKALLEEIGIFILEASNGVEALERALEMP--VDLFLVDINMPKMDG 61
Query: 95 FKLLEHIGLEMDL---PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELK 140
F L+ I +L P + T+ + S +GI GA Y++KP+ EEL+
Sbjct: 62 FTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQ 113
>TIGR_CMR|CHY_1855 [details] [associations]
symbol:CHY_1855 "sigma-54 dependent transcriptional
regulator/response regulator" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00688 RefSeq:YP_360675.1
ProteinModelPortal:Q3AB09 STRING:Q3AB09 GeneID:3727631
KEGG:chy:CHY_1855 PATRIC:21276809 KO:K02481 OMA:NTRELFH
ProtClustDB:CLSK928866 BioCyc:CHYD246194:GJCN-1854-MONOMER
Uniprot:Q3AB09
Length = 443
Score = 141 (54.7 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 67/226 (29%), Positives = 102/226 (45%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
++VLVVDD+ +L Q L R Y V + AL L+E F + + D+ MP +D
Sbjct: 5 IKVLVVDDEENFRDLLIQRLTRKGYEVKGAATGEEALQFLKEET--FHLAIFDIKMPGID 62
Query: 94 GFKLLEHIG-LEMDLPVIT---DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
G +LL+ L+ +L VI G + + + ++ GA DYL KP EL+ Q K
Sbjct: 63 GIELLQRARQLDENLQVIILTGHGTIESAIGAMKLGAYDYLTKPCNLAELEITLQKAYEK 122
Query: 150 RWNENKEHENSGSLEETDHHKRGSDEIEYAS-SVNEGTEGTFKAQRKRISAKEEDDGELE 208
R EN G ++E R S I S ++ E K+++A D +
Sbjct: 123 R---QLLEENLG-MKEVLLRDRSSKVIVGKSKAITRVLE-----LAKKVAAS---DSPVL 170
Query: 209 SDDPSTTKKPRVV-----WSVELHQQFVSAVNQLGIDKAVPKRILE 249
+ S T K +V WS Q + A+N G A+P ++LE
Sbjct: 171 IEGESGTGKELIVNAIHQWSSRAQQPLI-AINS-G---ALPAQLLE 211
>TAIR|locus:2089260 [details] [associations]
symbol:AT3G13040 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0015996 "chlorophyll catabolic process"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002686 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY050889 EMBL:AY096674
IPI:IPI00543771 RefSeq:NP_566442.1 RefSeq:NP_974298.1
UniGene:At.11993 ProteinModelPortal:Q949U2 SMR:Q949U2 STRING:Q949U2
PRIDE:Q949U2 EnsemblPlants:AT3G13040.1 EnsemblPlants:AT3G13040.2
GeneID:820490 KEGG:ath:AT3G13040 OMA:RIEEHAK
ProtClustDB:CLSN2688327 ArrayExpress:Q949U2 Genevestigator:Q949U2
Uniprot:Q949U2
Length = 449
Score = 141 (54.7 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 31/66 (46%), Positives = 43/66 (65%)
Query: 209 SDDPSTTKKPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQE 267
S + +K R+ W+ ELH+ FV AV +L G +KA PK + +LMNV GLT +V SHLQ+
Sbjct: 233 SPGSAANQKSRMRWTPELHESFVKAVIKLEGPEKATPKAVKKLMNVEGLTIYHVKSHLQK 292
Query: 268 INLQKF 273
L K+
Sbjct: 293 YRLAKY 298
>TIGR_CMR|CPS_1750 [details] [associations]
symbol:CPS_1750 "transcriptional regulatory protein CpxR"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0009636 "response to
toxic substance" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 KO:K07662 RefSeq:YP_268481.1
ProteinModelPortal:Q484N4 STRING:Q484N4 GeneID:3518457
KEGG:cps:CPS_1750 PATRIC:21466667
BioCyc:CPSY167879:GI48-1820-MONOMER Uniprot:Q484N4
Length = 242
Score = 135 (52.6 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L++DDD +L + L + VT+C A L + FD++L DV MP ++GF
Sbjct: 11 ILLIDDDAELSELLTEYLESENFKVTSCLDGASGL--AKAFDDSFDLILLDVMMPILNGF 68
Query: 96 KLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEEL 139
++L+ +G P++ G + + G+ GA DYL KP + EL
Sbjct: 69 EVLKALGGNHKTPILMLTAKGDDNDRILGLELGADDYLAKPFKHREL 115
>TIGR_CMR|DET_0135 [details] [associations]
symbol:DET_0135 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483
RefSeq:YP_180885.1 ProteinModelPortal:Q3ZA64 STRING:Q3ZA64
GeneID:3230499 KEGG:det:DET0135 PATRIC:21607359 OMA:CYNLAKE
ProtClustDB:CLSK837603 BioCyc:DETH243164:GJNF-135-MONOMER
Uniprot:Q3ZA64
Length = 230
Score = 134 (52.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 41/133 (30%), Positives = 65/133 (48%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++LVV+DD T +L L + Y + AL + R K +V+ DV +P MDG
Sbjct: 5 KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRRFKP--SLVILDVMLPGMDG 62
Query: 95 FKLLEHIGLEMDLPVIT-DGRVSAV--MRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151
F+L I E +P++ R S + G+ GA DYL KP +EL + ++R+
Sbjct: 63 FELCRLIRAESSVPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALLRRSQ 122
Query: 152 NENKEHENSGSLE 164
+N + E L+
Sbjct: 123 MQNSQPEPVSGLK 135
>TIGR_CMR|GSU_1231 [details] [associations]
symbol:GSU_1231 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_952284.1
ProteinModelPortal:Q74DT4 GeneID:2686689 KEGG:gsu:GSU1231
PATRIC:22025231 HOGENOM:HOG000135980 OMA:MGTCLAV
ProtClustDB:CLSK828254 BioCyc:GSUL243231:GH27-1243-MONOMER
Uniprot:Q74DT4
Length = 131
Score = 118 (46.6 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 31/98 (31%), Positives = 54/98 (55%)
Query: 36 VLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+L+VDDD + + L++ +R+C V TCS AL ++R KG D++L D MP MD
Sbjct: 4 ILIVDDDRSFSQFLKKYIRQCFPALRVHTCSDPVRALGLIR--KGDVDLLLVDYEMPVMD 61
Query: 94 GFKLLEH---IGLEMDLPVITDGR-VSAVMRGIRHGAC 127
G K++ + +G++ + ++ R V + + G C
Sbjct: 62 GEKVVRYACQVGMDRNRIIVLSSRDVDYLHQHFPLGTC 99
>TIGR_CMR|BA_5504 [details] [associations]
symbol:BA_5504 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847664.1 RefSeq:YP_022171.1 RefSeq:YP_031352.1
ProteinModelPortal:Q81K35 DNASU:1085148
EnsemblBacteria:EBBACT00000010087 EnsemblBacteria:EBBACT00000018699
EnsemblBacteria:EBBACT00000023974 GeneID:1085148 GeneID:2819097
GeneID:2848975 KEGG:ban:BA_5504 KEGG:bar:GBAA_5504 KEGG:bat:BAS5113
OMA:NMARRVK ProtClustDB:CLSK899140
BioCyc:BANT260799:GJAJ-5188-MONOMER
BioCyc:BANT261594:GJ7F-5366-MONOMER Uniprot:Q81K35
Length = 223
Score = 133 (51.9 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 40/138 (28%), Positives = 71/138 (51%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+++LVVDD+ + ++ L Y V T + L+ R +G DV++ DV +PD D
Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREVLE--RWNEGP-DVLILDVMLPDTD 57
Query: 94 GFKLLEHIG-LEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEEL----KNIWQH 145
G++LL + D+PV+ +++ + G++ GA DY+ KP EL KN+ +
Sbjct: 58 GYELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117
Query: 146 VVRKRWNENKEHENSGSL 163
V +K + E +G +
Sbjct: 118 VKKKEVTVSHEVIEAGEI 135
>TIGR_CMR|GSU_2581 [details] [associations]
symbol:GSU_2581 "sigma-54 dependent transcriptional
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025944 PROSITE:PS00688 HSSP:P06143 RefSeq:NP_953627.1
ProteinModelPortal:Q74A10 GeneID:2687775 KEGG:gsu:GSU2581
PATRIC:22028017 OMA:LTERIMA ProtClustDB:CLSK763211
BioCyc:GSUL243231:GH27-2558-MONOMER Uniprot:Q74A10
Length = 456
Score = 140 (54.3 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 43/135 (31%), Positives = 68/135 (50%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L VDDD L +LE +L + T A AL +L ER+ D+++SD+ M M+G
Sbjct: 5 KILAVDDDELSLLMLENLLADAGFAPLTAVSGAQALALL-EREHV-DLLISDLIMEGMNG 62
Query: 95 FKLLEHIGLEM-DLPVIT---DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150
+LL+ + ++PVI G V + + +R GA DYL KP E L+ Q +
Sbjct: 63 LELLDRVRERYPNVPVIVVTARGSVESAVEAMRRGAYDYLAKPFNPEVLRITLQRALDYH 122
Query: 151 WNENKEHENSGSLEE 165
+ + +G L E
Sbjct: 123 HVVRENEQITGLLRE 137
>TIGR_CMR|GSU_2915 [details] [associations]
symbol:GSU_2915 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 RefSeq:NP_953957.1
ProteinModelPortal:Q748T6 GeneID:2688534 KEGG:gsu:GSU2915
PATRIC:22028689 OMA:AFRYRMK ProtClustDB:CLSK829000
BioCyc:GSUL243231:GH27-2910-MONOMER Uniprot:Q748T6
Length = 457
Score = 140 (54.3 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 63/222 (28%), Positives = 97/222 (43%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++LVVDD+ LEQ L++ Y+V + AL I+RE + D+VL D+ +P + G
Sbjct: 5 KILVVDDEHLIRWSLEQNLKKQGYDVVSAGNGEDALRIVREEQP--DLVLLDIQLPGISG 62
Query: 95 FKLLEHIGLEMD-----LPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
+ LE I E D + V G + + +R GA DY+ KP +E+ +I V+RK
Sbjct: 63 LEALEKIK-EYDEEILVIMVTAHGALETAVHAMRLGAYDYINKPFNLDEM-SI---VIRK 117
Query: 150 RWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGELES 209
+ L K G +I AS + + K AK + L
Sbjct: 118 ALETSDLRREVQRLRSEQSRKFGPPDIIGAS---RHMKNVLEMMEK--VAKSDASTVLIQ 172
Query: 210 DDPSTTKKPRVVWSVELHQQFVSAVNQ-LGID-KAVPKRILE 249
+ T K+ W +H Q A + I+ AVP +LE
Sbjct: 173 GESGTGKELVAKW---IHYQSARAEKPFVAINCAAVPATLLE 211
>TIGR_CMR|CPS_2786 [details] [associations]
symbol:CPS_2786 "response regulator" species:167879
"Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 KO:K02483 RefSeq:YP_269498.1
ProteinModelPortal:Q480M1 STRING:Q480M1 GeneID:3518447
KEGG:cps:CPS_2786 PATRIC:21468611 ProtClustDB:CLSK757256
BioCyc:CPSY167879:GI48-2847-MONOMER Uniprot:Q480M1
Length = 243
Score = 134 (52.2 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 39/110 (35%), Positives = 62/110 (56%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+R+L+V+DD L+Q L R + V S+ +AL L D+V+ D+ +PD+D
Sbjct: 1 MRILLVEDDQGLAEALQQSLVREGFVVDHLSRGKLALTALAVPS--HDMVILDLGLPDID 58
Query: 94 GFKLLEHIGLEM-DLPVIT-DGR--VSAVMRGIRHGACDYLIKPIREEEL 139
G +L+ I + DLPVI R + + ++G+ +GA DYL KP +EL
Sbjct: 59 GLLVLKEIRAKKNDLPVIILTARDSIDSKVKGLDYGADDYLAKPFDMQEL 108
>TAIR|locus:2085984 [details] [associations]
symbol:AT3G25790 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
EMBL:AB028607 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237574 ProtClustDB:CLSN2687791 IPI:IPI00546166
RefSeq:NP_566778.1 UniGene:At.37325 ProteinModelPortal:Q9LS00
SMR:Q9LS00 EnsemblPlants:AT3G25790.1 GeneID:822170
KEGG:ath:AT3G25790 TAIR:At3g25790 InParanoid:Q9LS00 OMA:AYKREIS
PhylomeDB:Q9LS00 Genevestigator:Q9LS00 Uniprot:Q9LS00
Length = 357
Score = 138 (53.6 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 42/145 (28%), Positives = 72/145 (49%)
Query: 136 EEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRK 195
++ +K+ W V+ WN++ + S + ++ K ++ + +N+ E K
Sbjct: 121 DKNMKSEWLKSVQL-WNQS-DAVVSNNRQDRSQEK--TETLVELIKIND--EAAKKNNNI 174
Query: 196 RISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGIDK-AVPKRILELMNVP 254
+ D G +K R WS ELH++F++A+ QLG A PK+I ++M V
Sbjct: 175 KSPVTTSDGGSGGGGGRRGQRKNRRCWSQELHRRFLNALKQLGGPHVATPKQIRDIMKVD 234
Query: 255 GLTRENVASHLQEINLQKFRLYLKR 279
GLT + V SHLQ K+RL+ +R
Sbjct: 235 GLTNDEVKSHLQ-----KYRLHARR 254
>UNIPROTKB|P71403 [details] [associations]
symbol:cheY "Chemotaxis protein CheY homolog" species:85962
"Helicobacter pylori 26695" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AE000511
GenomeReviews:AE000511_GR GO:GO:0001539 KO:K03413 EMBL:X81897
EMBL:U97567 EMBL:AF021090 PIR:C64653 RefSeq:NP_207858.1
RefSeq:YP_006934983.1 PDB:3GWG PDB:3H1E PDB:3H1F PDB:3H1G
PDBsum:3GWG PDBsum:3H1E PDBsum:3H1F PDBsum:3H1G
ProteinModelPortal:P71403 DIP:DIP-3256N MINT:MINT-160671
GeneID:13870261 GeneID:899603 KEGG:heo:C694_05515 KEGG:hpy:HP1067
PATRIC:20593473 OMA:DVLITDW ProtClustDB:CLSK872349
EvolutionaryTrace:P71403 Uniprot:P71403
Length = 124
Score = 117 (46.2 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 32/114 (28%), Positives = 62/114 (54%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
+++LVVDD T RI++ L R Y +V A + L + V+++D +MP+M
Sbjct: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL-DANADTKVLITDWNMPEM 59
Query: 93 DGFKLLEHIGLEM---DLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELK 140
+G L++ + + ++P+I T+G + V+ ++ G +Y++KP + LK
Sbjct: 60 NGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 113
>TIGR_CMR|GSU_2574 [details] [associations]
symbol:GSU_2574 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:NP_953620.1
ProteinModelPortal:Q74A17 GeneID:2686365 KEGG:gsu:GSU2574
PATRIC:22028001 KO:K07814 OMA:HTRRISE ProtClustDB:CLSK746108
BioCyc:GSUL243231:GH27-2551-MONOMER Uniprot:Q74A17
Length = 368
Score = 138 (53.6 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 46/136 (33%), Positives = 67/136 (49%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+ VLVVDD+ +L ML L T AL +L ++ D++L D+ MP+++
Sbjct: 5 ISVLVVDDEEMNRELLSVMLDG-LATPITAQNGLEALRVL-DKNSAIDLILLDLEMPELN 62
Query: 94 GFKLLEHIG---LEMDLPVIT-DGRVSAVMRGIRHGACDYLIKPIREEELK-NIWQHVVR 148
GF L + L D+PVI V R +R GA D+L KP EEL+ + HV
Sbjct: 63 GFATLATLKKHPLWCDIPVIVLTASKDEVTRTLRLGANDFLAKPYDTEELRLRVMNHVRA 122
Query: 149 KRWNENKEHENSGSLE 164
K+ + + N G LE
Sbjct: 123 KKLVDLSQDVN-GILE 137
>TIGR_CMR|DET_0232 [details] [associations]
symbol:DET_0232 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180980.1 ProteinModelPortal:Q3Z9W9 STRING:Q3Z9W9
GeneID:3230435 KEGG:det:DET0232 PATRIC:21607535 OMA:SIRELWI
ProtClustDB:CLSK741610 BioCyc:DETH243164:GJNF-232-MONOMER
Uniprot:Q3Z9W9
Length = 227
Score = 132 (51.5 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 33/109 (30%), Positives = 59/109 (54%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+++L+++DD + ++ + + N S ++ I D++L D+ +PDM+
Sbjct: 1 MKLLLIEDDAEIVDVISTIFQISCPNSRVISASSGRKGIESVESVNPDIILLDLGLPDMN 60
Query: 94 GFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEEL 139
GF +L+ I D+P+I G S V+RG+ GA DY+ KP R+ EL
Sbjct: 61 GFDVLKQIRNFSDVPIIILTVRGDESDVVRGLTLGANDYITKPFRQMEL 109
>TIGR_CMR|CJE_1358 [details] [associations]
symbol:CJE_1358 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 PIR:A81329 RefSeq:YP_179345.1
ProteinModelPortal:Q5HTP0 STRING:Q5HTP0 GeneID:3231864
KEGG:cjr:CJE1358 PATRIC:20044514 OMA:ACIFEEI ProtClustDB:CLSK879148
BioCyc:CJEJ195099:GJC0-1384-MONOMER Uniprot:Q5HTP0
Length = 221
Score = 131 (51.2 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 38/132 (28%), Positives = 70/132 (53%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+++DD++ I+E+ L Y V C A ALD+ ER FD+ + DV +P DG
Sbjct: 4 KILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYERY--FDLWILDVKVPLGDG 61
Query: 95 FKLLEHI---GLEMDLPVITD-GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150
F LL+ + G + +T + + +G G DY+ KP EL + ++++
Sbjct: 62 FSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIKKPFELAELSIRVKALLKRA 121
Query: 151 WN-ENKEHENSG 161
++ +N++ E+ G
Sbjct: 122 FSHKNEDFEDLG 133
>TIGR_CMR|CPS_3718 [details] [associations]
symbol:CPS_3718 "response regulator" species:167879
"Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR007492 Pfam:PF00072 Pfam:PF04397 PROSITE:PS50110
PROSITE:PS50930 SMART:SM00448 SMART:SM00850 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3279 HOGENOM:HOG000242207 KO:K02477
RefSeq:YP_270385.1 ProteinModelPortal:Q47XT5 STRING:Q47XT5
GeneID:3519843 KEGG:cps:CPS_3718 PATRIC:21470363 OMA:KVSRNYR
ProtClustDB:CLSK2309580 BioCyc:CPSY167879:GI48-3740-MONOMER
Uniprot:Q47XT5
Length = 275
Score = 134 (52.2 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 41/178 (23%), Positives = 84/178 (47%)
Query: 34 LRVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD 91
LR ++VDD+ L +L L + + + C A++ + D++ D+ MP
Sbjct: 4 LRTIIVDDEPLALNLLRAKLNKVPEIEIIAECKNGREAIEKTMDLAP--DLIFLDIQMPG 61
Query: 92 MDGFKLLEHIGLEM-DLPVITDGRVSAVMRGIRHGACDYLIKPIREEEL-KNIWQHVVRK 149
+DGF +++ + ++ L + T + A DY++KPI EE + + + + +VR
Sbjct: 62 VDGFGVIKKLQSDIVPLVIFTTAFEQYALDAFDVHAVDYILKPIDEERITRAVSRAIVRF 121
Query: 150 RWNENKEHENS--GSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRK-RISAKEEDD 204
E EH++ G+++ + + + + SS + + G K + +I K+ DD
Sbjct: 122 ETEEETEHKSRIIGAIDTINERENSASSSQ--SSQGQSSLGQNKGNLEHKIIIKDRDD 177
>TIGR_CMR|BA_1312 [details] [associations]
symbol:BA_1312 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_843778.1 RefSeq:YP_017926.1 RefSeq:YP_027483.1
ProteinModelPortal:Q81TG5 DNASU:1086011
EnsemblBacteria:EBBACT00000008055 EnsemblBacteria:EBBACT00000016708
EnsemblBacteria:EBBACT00000023489 GeneID:1086011 GeneID:2814757
GeneID:2850086 KEGG:ban:BA_1312 KEGG:bar:GBAA_1312 KEGG:bat:BAS1213
OMA:WDEAENG ProtClustDB:CLSK916176
BioCyc:BANT260799:GJAJ-1288-MONOMER
BioCyc:BANT261594:GJ7F-1346-MONOMER Uniprot:Q81TG5
Length = 223
Score = 131 (51.2 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 38/127 (29%), Positives = 60/127 (47%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
RVLVVDD+ +++ L Y AL L +D V+ D+ MP+MDG
Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDH--YDFVVLDIMMPEMDG 62
Query: 95 FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151
+ + I D+P+I G + G+R GA DY++KP EL + V+R+
Sbjct: 63 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 122
Query: 152 NENKEHE 158
+ ++ E
Sbjct: 123 KQEQQEE 129
>TAIR|locus:2041539 [details] [associations]
symbol:AT2G42660 "AT2G42660" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AC006931 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AC007087 EMBL:AY074640 EMBL:AY078938
IPI:IPI00542274 PIR:F84856 RefSeq:NP_181794.1 UniGene:At.37023
ProteinModelPortal:Q9SJJ0 SMR:Q9SJJ0 PaxDb:Q9SJJ0 PRIDE:Q9SJJ0
EnsemblPlants:AT2G42660.1 GeneID:818866 KEGG:ath:AT2G42660
TAIR:At2g42660 eggNOG:NOG258430 HOGENOM:HOG000153491 OMA:NREETVE
PhylomeDB:Q9SJJ0 ProtClustDB:CLSN2913320 ArrayExpress:Q9SJJ0
Genevestigator:Q9SJJ0 Uniprot:Q9SJJ0
Length = 255
Score = 133 (51.9 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 193 QRKRISAKEEDDGELESDDPST--------TKKPRVVWSVELHQQFVSAVNQLG-IDKAV 243
+ + + E++ +E +D T + PR+ W+ +LH FV AV +LG D+A
Sbjct: 18 REETVEKNNEEESSVEDEDQITNNVRQYIRSNMPRLRWTPDLHLSFVRAVQRLGGPDRAT 77
Query: 244 PKRILELMNVPGLTRENVASHLQEINLQK 272
PK +LE+MN+ GL+ +V SHLQ +K
Sbjct: 78 PKLVLEMMNLKGLSIAHVKSHLQMYRSKK 106
>TIGR_CMR|GSU_0470 [details] [associations]
symbol:GSU_0470 "sigma-54 dependent response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_951529.1 ProteinModelPortal:Q74FY2 GeneID:2686241
KEGG:gsu:GSU0470 PATRIC:22023688 OMA:QYRLREY ProtClustDB:CLSK827855
BioCyc:GSUL243231:GH27-461-MONOMER Uniprot:Q74FY2
Length = 453
Score = 138 (53.6 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 40/138 (28%), Positives = 72/138 (52%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+L+ +DD T L +L+ Y++ + AL +LR FD+VLSD+ MP + G
Sbjct: 4 RILIAEDDSTFRGFLRTVLKGEGYDIREAADGEEALALLRRES--FDLVLSDLRMPGIGG 61
Query: 95 FKLLEHIGLEMDLP----VITD-GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
+LL + D P ++T G + + ++ GA D+L KP+++ + + V R
Sbjct: 62 LELLR-ASRDDDYPPAFVILTAFGTIEEAVAAVKEGAADFLTKPLKDPDTLRVL--VGRV 118
Query: 150 RWNENKEHENSGSLEETD 167
+++E E +L+ET+
Sbjct: 119 LSGKSREREYL-ALKETE 135
>TAIR|locus:2011286 [details] [associations]
symbol:ARR7 "response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0019827 "stem cell
maintenance" evidence=IMP] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=RCA] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0010200 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492
ProtClustDB:CLSN2914197 eggNOG:COG3706 EMBL:AB008490 EMBL:AC068602
IPI:IPI00536268 PIR:T50854 RefSeq:NP_173339.1 UniGene:At.238
ProteinModelPortal:Q9ZWS7 SMR:Q9ZWS7 IntAct:Q9ZWS7 STRING:Q9ZWS7
EnsemblPlants:AT1G19050.1 GeneID:838487 KEGG:ath:AT1G19050
GeneFarm:4124 TAIR:At1g19050 InParanoid:Q9ZWS7 OMA:LRISSCK
PhylomeDB:Q9ZWS7 Genevestigator:Q9ZWS7 GermOnline:AT1G19050
GO:GO:0019827 Uniprot:Q9ZWS7
Length = 206
Score = 129 (50.5 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 48/185 (25%), Positives = 92/185 (49%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILR--ERKGC-------FDVVL 84
L VL VDD I +++E++LR VTT AL L KG ++++
Sbjct: 24 LHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGASNLKDLKVNLIV 83
Query: 85 SDVHMPDMDGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEE 138
+D MP + G+ LL+ I ++PV+ ++ + + ++ GA ++L+KP++ +
Sbjct: 84 TDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEFLLKPVKLAD 143
Query: 139 LKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRIS 198
+K I Q ++R NE +E + L ++ K D + +SS ++ T + KR+
Sbjct: 144 VKRIKQLIMR---NEAEECK---ILSHSNKRKLQEDS-DTSSSSHDDTSIKDSSCSKRMK 196
Query: 199 AKEED 203
++ E+
Sbjct: 197 SESEN 201
>UNIPROTKB|O53894 [details] [associations]
symbol:mprA "Response regulator MprA" species:1773
"Mycobacterium tuberculosis" [GO:0000160 "phosphorelay signal
transduction system" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006950 "response
to stress" evidence=IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0090034 "regulation of chaperone-mediated protein complex
assembly" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0005737 GO:GO:0005618
GO:GO:0045892 GO:GO:0045893 GO:GO:0009405 GO:GO:0006950
EMBL:BX842575 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000160 eggNOG:COG0745
HOGENOM:HOG000034815 GO:GO:0090034 PIR:A70821 RefSeq:NP_215496.1
RefSeq:NP_335443.1 RefSeq:YP_006514341.1 HSSP:P0A5Z6
ProteinModelPortal:O53894 SMR:O53894 PRIDE:O53894
EnsemblBacteria:EBMYCT00000001458 EnsemblBacteria:EBMYCT00000070763
GeneID:13319541 GeneID:885038 GeneID:925187 KEGG:mtc:MT1009
KEGG:mtu:Rv0981 KEGG:mtv:RVBD_0981 PATRIC:18123964
TubercuList:Rv0981 KO:K07669 OMA:MLMANPR ProtClustDB:CLSK790869
Uniprot:O53894
Length = 230
Score = 131 (51.2 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 42/114 (36%), Positives = 60/114 (52%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCL----YNVTTCSQAAVALDILRERKGCFDVVLSDVHM 89
+R+LVVDDD R + + LRR L Y+V ALD++ + D ++ DV M
Sbjct: 3 VRILVVDDD----RAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRP--DALVLDVMM 56
Query: 90 PDMDGFKLLEHI-GLEMDLPVIT-DGR--VSAVMRGIRHGACDYLIKPIREEEL 139
P +DG ++ + G DLP++ R VS + G+ GA DYL KP EEL
Sbjct: 57 PRLDGLEVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEEL 110
>TIGR_CMR|GSU_1129 [details] [associations]
symbol:GSU_1129 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952182.1 ProteinModelPortal:Q74E35 GeneID:2687644
KEGG:gsu:GSU1129 PATRIC:22025020 OMA:YEFANII ProtClustDB:CLSK828199
BioCyc:GSUL243231:GH27-1139-MONOMER Uniprot:Q74E35
Length = 453
Score = 137 (53.3 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 34/120 (28%), Positives = 63/120 (52%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L++DD+ T L +L+ + V + + A L + FD+V++D+ +PD G
Sbjct: 6 KILLIDDEETGREALTLLLKAAGHAVKSAGAGSEAFQTLT--RDTFDIVITDLFLPDASG 63
Query: 95 FKLLEHIGLEMDLP--VITDGRVSA--VMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150
+L+ + + L ++ G SA ++ ++ GA DY+ KP+ +ELK I V KR
Sbjct: 64 IDILKKVKEDAPLTEVILITGHASAETAVKAMKEGAFDYITKPLNFDELKIIIGKAVEKR 123
>TIGR_CMR|SPO_2087 [details] [associations]
symbol:SPO_2087 "nitrogen regulation protein NtrC"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0009399
"nitrogen fixation" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00688 KO:K07712 RefSeq:YP_167317.1
ProteinModelPortal:Q5LRN8 DNASU:3195357 GeneID:3195357
KEGG:sil:SPO2087 PATRIC:23377515 OMA:YEEAGSA ProtClustDB:CLSK933754
Uniprot:Q5LRN8
Length = 457
Score = 137 (53.3 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 48/137 (35%), Positives = 65/137 (47%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
VLV DDD T +L Q L R V S + + E KG DVV+SDV MPD +G
Sbjct: 5 VLVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVAEGKG--DVVISDVVMPDGNGL 62
Query: 96 KLLEHIGLEMD-LPVITDGRVSAVMRGIRHG---ACDYLIKPIREEEL-KNIWQHVVRKR 150
++L I + LPVI + +M I+ A DYL KP +L K + + +KR
Sbjct: 63 EMLPKIAQDRPGLPVIVISAQNTIMTAIQAAEAEAYDYLPKPFDLPDLMKRTARALEQKR 122
Query: 151 WNENKEHENSGSLEETD 167
+ E G+ E D
Sbjct: 123 RTVSSEPREEGA-ERPD 138
>TIGR_CMR|GSU_0776 [details] [associations]
symbol:GSU_0776 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_951833.1 ProteinModelPortal:Q74F33 GeneID:2685232
KEGG:gsu:GSU0776 PATRIC:22024313 OMA:KELPIWR ProtClustDB:CLSK828021
BioCyc:GSUL243231:GH27-778-MONOMER Uniprot:Q74F33
Length = 465
Score = 137 (53.3 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 34/113 (30%), Positives = 59/113 (52%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDMD 93
++L+ DD+ R L++M + + V T + L + G D++L DV MPDMD
Sbjct: 5 KILICDDEEGIRRYLQKMFQAKEFEVETFADGTSLLARIEAGTDGDADILLQDVRMPDMD 64
Query: 94 GFKLLEHIG-LEMDLPVITD---GRVSAVMRGIRHGACDYLIKPIREEELKNI 142
G ++L+ + L LPV+ G + + + I+ GA DY+ KP E++ +
Sbjct: 65 GIEVLKRVKKLRPSLPVVVMTAFGTIDSAVDAIKLGAYDYVTKPFPREKILGV 117
>UNIPROTKB|P0A5Z4 [details] [associations]
symbol:mtrA "DNA-binding response regulator MtrA"
species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0006468 "protein phosphorylation"
evidence=IDA] [GO:0044117 "growth of symbiont in host"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0045893 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0006468 GO:GO:0044117 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:BX842582
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 EMBL:U01971 PIR:H70592 RefSeq:NP_217763.1
RefSeq:NP_337872.1 RefSeq:YP_006516722.1 PDB:2GWR PDB:3NHZ
PDBsum:2GWR PDBsum:3NHZ ProteinModelPortal:P0A5Z4 SMR:P0A5Z4
EnsemblBacteria:EBMYCT00000000173 EnsemblBacteria:EBMYCT00000070796
GeneID:13318068 GeneID:888743 GeneID:923067 KEGG:mtc:MT3344
KEGG:mtu:Rv3246c KEGG:mtv:RVBD_3246c PATRIC:18129108
TubercuList:Rv3246c KO:K07670 OMA:GFEPSFV ProtClustDB:CLSK872159
EvolutionaryTrace:P0A5Z4 Uniprot:P0A5Z4
Length = 228
Score = 130 (50.8 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 43/150 (28%), Positives = 76/150 (50%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVVDDD + +L +LR ++ AL +RE + D+VL D+ +P M+G
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP--DLVLLDLMLPGMNG 64
Query: 95 FKLLEHIGLEMDLPVI-----TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
+ + + +P++ TD V V+ G+ GA DY++KP + +EL + +R+
Sbjct: 65 IDVCRVLRADSGVPIVMLTAKTD-TVDVVL-GLESGADDYIMKPFKPKELVARVRARLRR 122
Query: 150 RWNENKEHENSGSLE-ETDHHK--RGSDEI 176
+E E + +E + HK R ++I
Sbjct: 123 NDDEPAEMLSIADVEIDVPAHKVTRNGEQI 152
>UNIPROTKB|Q45976 [details] [associations]
symbol:divK "Cell division response regulator DivK"
species:155892 "Caulobacter vibrioides" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0051301 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:U13765 PIR:S58671 HSSP:Q9A5I4
ProteinModelPortal:Q45976 SMR:Q45976 DIP:DIP-46001N IntAct:Q45976
Uniprot:Q45976
Length = 125
Score = 114 (45.2 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 32/106 (30%), Positives = 56/106 (52%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
+VL+V+D+ +++ +L Y + AL I RE K D++L D+ +P++ G
Sbjct: 4 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKP--DLILMDIQLPEISG 61
Query: 95 FKLLEHIGLEMDLPVITDGRVSA-VMRG----IRHGACD-YLIKPI 134
++ + + + DL I V+A M+G IR G C+ Y+ KPI
Sbjct: 62 LEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPI 107
>UNIPROTKB|Q4GZK3 [details] [associations]
symbol:rr8 "Type A response regulator 8" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:AJ938077 ProteinModelPortal:Q4GZK3
STRING:Q4GZK3 KEGG:dosa:Os08t0376700-01 KEGG:dosa:Os08t0377200-01
Gramene:Q4GZK3 Uniprot:Q4GZK3
Length = 121
Score = 114 (45.2 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 34/117 (29%), Positives = 57/117 (48%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
VLVVDD ++ L R VT AL L + + D+++SD MPDM G+
Sbjct: 6 VLVVDDTHVDRHVVSMALMRHNVRVTAVESVMQALMFL-DSEHDVDMIVSDYCMPDMTGY 64
Query: 96 KLLEHIGLE---MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146
LL + LPV+ +D + + + GA DY++KP++ ++ I +++
Sbjct: 65 NLLMEVKKSPKLAHLPVVIASSDNIPERIRKCLDGGAKDYILKPVKIVDVPRIMKYI 121
>TIGR_CMR|GSU_1286 [details] [associations]
symbol:GSU_1286 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_952339.1
ProteinModelPortal:Q74DN0 GeneID:2686542 KEGG:gsu:GSU1286
PATRIC:22025343 OMA:CMDIMMP ProtClustDB:CLSK2522233
BioCyc:GSUL243231:GH27-1254-MONOMER Uniprot:Q74DN0
Length = 131
Score = 114 (45.2 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 40/130 (30%), Positives = 65/130 (50%)
Query: 34 LRVLVVDDDITCLRILEQMLR---RCLYNVTTCSQAAV-ALDILRERKGCFDVVLSDVHM 89
++ L+V+DD +I++++L C ++ T + AV A + + +D+V D+ M
Sbjct: 1 MKTLIVEDDFISRKIMKELLTSLGEC--DIATDGEEAVQAFRLALDEHRPYDLVCMDIMM 58
Query: 90 PDMDGFKLLEHI-------GLE--MDLPVIT----DGRVSAVMRGIRHGACDYLIKPIRE 136
P+MDG + LE I GL ++ VI D + V R GA YL+KPI +
Sbjct: 59 PNMDGHEALEQIREIERGMGLNGAQEVKVIMTTALDDPKNVVEAFYRGGATSYLVKPITK 118
Query: 137 EEL-KNIWQH 145
+ L K I H
Sbjct: 119 QRLMKEIRSH 128
>TAIR|locus:2115070 [details] [associations]
symbol:AT4G37180 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00537470
RefSeq:NP_849513.1 UniGene:At.4657 ProteinModelPortal:F4JRB0
SMR:F4JRB0 PRIDE:F4JRB0 EnsemblPlants:AT4G37180.2 GeneID:829872
KEGG:ath:AT4G37180 OMA:SCRNDET Uniprot:F4JRB0
Length = 363
Score = 135 (52.6 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 32/77 (41%), Positives = 50/77 (64%)
Query: 216 KKPRVVWSVELHQQFVSAVNQLGIDK-AVPKRILELMNVPGLTRENVASHLQE--INLQK 272
K+ R WS ELH++FV A+++LG + A PK+I +LM V GLT + V SHLQ+ ++++K
Sbjct: 216 KEQRRRWSQELHRKFVDALHRLGGPQVATPKQIRDLMKVDGLTNDEVKSHLQKYRMHIRK 275
Query: 273 FRLYLKRLNGVSQQGGI 289
L+ + S Q G+
Sbjct: 276 HPLHPTKTLSSSDQPGV 292
>TIGR_CMR|BA_0287 [details] [associations]
symbol:BA_0287 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842837.1 RefSeq:YP_016897.1 RefSeq:YP_026554.1
ProteinModelPortal:Q81VC5 DNASU:1085878
EnsemblBacteria:EBBACT00000011028 EnsemblBacteria:EBBACT00000016417
EnsemblBacteria:EBBACT00000022481 GeneID:1085878 GeneID:2819460
GeneID:2851280 KEGG:ban:BA_0287 KEGG:bar:GBAA_0287 KEGG:bat:BAS0273
OMA:NYNLVIL ProtClustDB:CLSK917934
BioCyc:BANT260799:GJAJ-313-MONOMER
BioCyc:BANT261594:GJ7F-322-MONOMER Uniprot:Q81VC5
Length = 237
Score = 130 (50.8 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 32/110 (29%), Positives = 57/110 (51%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+R+L+ DDD +L+ L R LY V T VAL + + + +V+ D+ MP +D
Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNN--YSIVILDLMMPKVD 61
Query: 94 GFKLLEHIGLEMDLPVIT----DGRVSAVMRGIRHGACDYLIKPIREEEL 139
G ++ + + ++P++ D V ++ G+ GA DY+ KP E+
Sbjct: 62 GIEVCRKLRDKTNVPILMLTAKDHEVDKIL-GLSIGADDYITKPFSIHEV 110
>TIGR_CMR|BA_0571 [details] [associations]
symbol:BA_0571 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034815 HSSP:P08402 RefSeq:NP_843105.1
RefSeq:YP_017194.1 RefSeq:YP_026818.1 ProteinModelPortal:Q81YR2
DNASU:1087909 EnsemblBacteria:EBBACT00000010289
EnsemblBacteria:EBBACT00000017976 EnsemblBacteria:EBBACT00000019549
GeneID:1087909 GeneID:2816056 GeneID:2852340 KEGG:ban:BA_0571
KEGG:bar:GBAA_0571 KEGG:bat:BAS0540 OMA:TQQTIRY
ProtClustDB:CLSK915864 BioCyc:BANT260799:GJAJ-600-MONOMER
BioCyc:BANT261594:GJ7F-626-MONOMER Uniprot:Q81YR2
Length = 223
Score = 129 (50.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 37/112 (33%), Positives = 63/112 (56%)
Query: 34 LRVLVVDDDITCLRILEQMLRRC-LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
+R+LVV+D+ + L + Q+L C + V T L + + +D +L DV MP+M
Sbjct: 1 MRLLVVEDNASLLESIVQIL--CDEFEVDTALNGEDGLFLALQN--IYDAILLDVMMPEM 56
Query: 93 DGFKLLEHIGLE-MDLPVI-TDGRVSAV--MRGIRHGACDYLIKPIREEELK 140
DGF++++ I E ++ PV+ R S ++G+ G DY++KP + ELK
Sbjct: 57 DGFEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELK 108
>TIGR_CMR|BA_3067 [details] [associations]
symbol:BA_3067 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P06628
RefSeq:NP_845397.1 RefSeq:YP_019708.1 RefSeq:YP_029111.1
ProteinModelPortal:Q81NV5 DNASU:1088217
EnsemblBacteria:EBBACT00000009080 EnsemblBacteria:EBBACT00000017281
EnsemblBacteria:EBBACT00000021032 GeneID:1088217 GeneID:2817324
GeneID:2850761 KEGG:ban:BA_3067 KEGG:bar:GBAA_3067 KEGG:bat:BAS2853
OMA:LTKEHFF ProtClustDB:CLSK886597
BioCyc:BANT260799:GJAJ-2916-MONOMER
BioCyc:BANT261594:GJ7F-3019-MONOMER Uniprot:Q81NV5
Length = 223
Score = 129 (50.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 34/108 (31%), Positives = 63/108 (58%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L+V+DD+ +L+++L+R YNV + LDI+ E D+V+ DV +P DG+
Sbjct: 6 ILIVEDDLIIGDLLQKILQREKYNVYWEKEGRKVLDIIHE----IDLVVMDVMLPGEDGY 61
Query: 96 KLLEHI-GLEMDLPVI-TDGR--VSAVMRGIRHGACDYLIKPIREEEL 139
++ + I L +++P+I R + + ++G+ G +Y+IKP EL
Sbjct: 62 QITKKIKNLGLNIPIIFLSARNDMDSKLKGLTIGE-EYMIKPFDPREL 108
>TAIR|locus:2038957 [details] [associations]
symbol:AT2G20400 "AT2G20400" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009555 "pollen development" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009555 GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT006119
EMBL:AK118313 IPI:IPI00521384 RefSeq:NP_179630.2 UniGene:At.43867
ProteinModelPortal:Q8GXC2 SMR:Q8GXC2 PaxDb:Q8GXC2 PRIDE:Q8GXC2
EnsemblPlants:AT2G20400.1 GeneID:816559 KEGG:ath:AT2G20400
TAIR:At2g20400 eggNOG:NOG265443 HOGENOM:HOG000064669
InParanoid:Q8GXC2 OMA:ANSMENR PhylomeDB:Q8GXC2
ProtClustDB:CLSN2918042 Genevestigator:Q8GXC2 Uniprot:Q8GXC2
Length = 397
Score = 135 (52.6 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 30/66 (45%), Positives = 43/66 (65%)
Query: 209 SDDPSTTKKPRVVWSVELHQQFVSAVNQLG-IDKAVPKRILELMNVPGLTRENVASHLQE 267
S++ + K R+ W+ ELH+ FV AVNQLG ++A PK +L+ M V GLT +V SHLQ+
Sbjct: 223 SNNAAAAAKGRMRWTPELHEVFVDAVNQLGGSNEATPKGVLKHMKVEGLTIFHVKSHLQK 282
Query: 268 INLQKF 273
K+
Sbjct: 283 YRTAKY 288
>TIGR_CMR|DET_1540 [details] [associations]
symbol:DET_1540 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_182238.1 ProteinModelPortal:Q3Z6B1
GeneID:3229185 KEGG:det:DET1540 PATRIC:21610100 OMA:ARIRCIL
ProtClustDB:CLSK741608 BioCyc:DETH243164:GJNF-1541-MONOMER
Uniprot:Q3Z6B1
Length = 225
Score = 129 (50.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 37/143 (25%), Positives = 76/143 (53%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPD 91
+++L+++DD ++ + L+ +VT + S+ L ++ E++ ++V+ D+ +PD
Sbjct: 1 MKILIIEDDYKIVQAISFALKIGWPDVTLLSASRGESGLRMIEEQRP--NLVILDLSLPD 58
Query: 92 MDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148
MDG ++L+ L D P+I S V+ + GA +Y+IKP R+ EL + ++R
Sbjct: 59 MDGLEVLKDARLFCDTPIIILTVRSEESDVVEALELGANEYIIKPFRQMELLARIRCILR 118
Query: 149 KRWNENKEHENSGSLEETDHHKR 171
+ +K+ + D+ KR
Sbjct: 119 RPITTSKDALLEWGPFKLDYFKR 141
>UNIPROTKB|Q9KUA1 [details] [associations]
symbol:VC_0622 "Sensory box sensor histidine
kinase/response regulator" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0000155 "phosphorelay sensor kinase
activity" evidence=ISS] [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0023014 "signal transduction
by phosphorylation" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003660 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF00672 Pfam:PF02518 Pfam:PF13188 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50885 SMART:SM00091 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005524 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 HSSP:P08402 PIR:A82300
RefSeq:NP_230271.1 ProteinModelPortal:Q9KUA1 DNASU:2615410
GeneID:2615410 KEGG:vch:VC0622 PATRIC:20080353 OMA:SLYVSSQ
ProtClustDB:CLSK874044 Uniprot:Q9KUA1
Length = 1177
Score = 141 (54.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 45/143 (31%), Positives = 70/143 (48%)
Query: 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
G +LV DD+ LR+L+ LR Y V T L+ ++ K ++VL D+ MP M
Sbjct: 769 GPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKP--ELVLLDIMMPGM 826
Query: 93 DGFKLLEHIGLEMD---LPVITDGRVSAV---MRGIRHGACDYLIKPIREEELK-NIWQH 145
G+++ E + D LP+I ++ +RG GA DYL KP ++EL I H
Sbjct: 827 SGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAH 886
Query: 146 VVRKRWNENKEHENSGSLEETDH 168
+ + E + EN+ +E H
Sbjct: 887 LTASK-AELRRIENAQLQKELKH 908
>TIGR_CMR|VC_0622 [details] [associations]
symbol:VC_0622 "sensory box sensor histidine
kinase/response regulator" species:686 "Vibrio cholerae O1 biovar
El Tor" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF00672 Pfam:PF02518 Pfam:PF13188
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50885 SMART:SM00091
SMART:SM00304 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 HSSP:P08402 PIR:A82300
RefSeq:NP_230271.1 ProteinModelPortal:Q9KUA1 DNASU:2615410
GeneID:2615410 KEGG:vch:VC0622 PATRIC:20080353 OMA:SLYVSSQ
ProtClustDB:CLSK874044 Uniprot:Q9KUA1
Length = 1177
Score = 141 (54.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 45/143 (31%), Positives = 70/143 (48%)
Query: 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
G +LV DD+ LR+L+ LR Y V T L+ ++ K ++VL D+ MP M
Sbjct: 769 GPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKP--ELVLLDIMMPGM 826
Query: 93 DGFKLLEHIGLEMD---LPVITDGRVSAV---MRGIRHGACDYLIKPIREEELK-NIWQH 145
G+++ E + D LP+I ++ +RG GA DYL KP ++EL I H
Sbjct: 827 SGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAH 886
Query: 146 VVRKRWNENKEHENSGSLEETDH 168
+ + E + EN+ +E H
Sbjct: 887 LTASK-AELRRIENAQLQKELKH 908
>UNIPROTKB|Q747L2 [details] [associations]
symbol:GSU3253 "Response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0035556 "intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 RefSeq:NP_954294.1 ProteinModelPortal:Q747L2
GeneID:2688275 KEGG:gsu:GSU3253 PATRIC:22029347 OMA:LCTAFSC
ProtClustDB:CLSK829186 BioCyc:GSUL243231:GH27-3229-MONOMER
Uniprot:Q747L2
Length = 123
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVVDD+ + + Q L + V T + AA A+D +RE + FD+++ D+ + + G
Sbjct: 3 RLLVVDDENSIRLLYSQELAEEGHEVVTAATAAEAVDKIREHE--FDLIVLDIKLKNESG 60
Query: 95 FKLLEHIGLEM-DLPVITDGRVSAVMRGIRHGACD-YLIKPIREEELKNIWQHVVRKR 150
LL+ + E +LPV+ S D Y++K ELK + V+ KR
Sbjct: 61 LDLLQKVVKERHNLPVVLCTAFSCFKDDFSAWLADGYVVKSSDLSELKEEVKRVLAKR 118
>TIGR_CMR|GSU_3253 [details] [associations]
symbol:GSU_3253 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_954294.1 ProteinModelPortal:Q747L2 GeneID:2688275
KEGG:gsu:GSU3253 PATRIC:22029347 OMA:LCTAFSC ProtClustDB:CLSK829186
BioCyc:GSUL243231:GH27-3229-MONOMER Uniprot:Q747L2
Length = 123
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVVDD+ + + Q L + V T + AA A+D +RE + FD+++ D+ + + G
Sbjct: 3 RLLVVDDENSIRLLYSQELAEEGHEVVTAATAAEAVDKIREHE--FDLIVLDIKLKNESG 60
Query: 95 FKLLEHIGLEM-DLPVITDGRVSAVMRGIRHGACD-YLIKPIREEELKNIWQHVVRKR 150
LL+ + E +LPV+ S D Y++K ELK + V+ KR
Sbjct: 61 LDLLQKVVKERHNLPVVLCTAFSCFKDDFSAWLADGYVVKSSDLSELKEEVKRVLAKR 118
>TIGR_CMR|SPO_1892 [details] [associations]
symbol:SPO_1892 "C4-dicarboxylate transport
transcriptional regulatory protein DctD" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000058489 InterPro:IPR025662
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00688
RefSeq:YP_167129.1 ProteinModelPortal:Q5LS76 DNASU:3193394
GeneID:3193394 KEGG:sil:SPO1892 PATRIC:23377117 OMA:IDNTMRR
ProtClustDB:CLSK933667 Uniprot:Q5LS76
Length = 444
Score = 135 (52.6 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 36/114 (31%), Positives = 60/114 (52%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDIL-RERKGCFDVVLSDVHMPDM 92
+++ +VDD+ + + Q L Y+ T + A AL +L E G +V+SD+ MP M
Sbjct: 5 MKIAIVDDEQDMRQSISQWLALSGYDTETFASAEEALKVLGSEYPG---IVISDIKMPGM 61
Query: 93 DGFKLLEHI-GLEMDLPVIT---DGRVSAVMRGIRHGACDYLIKPIREEELKNI 142
DG + L+ + G + LPVI G V + +R GA D+L KP + + ++
Sbjct: 62 DGMQFLKKLMGADSSLPVIMITGHGDVPMAVEAMRVGAFDFLEKPFNPDRMSDL 115
>TIGR_CMR|GSU_0842 [details] [associations]
symbol:GSU_0842 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR003018 InterPro:IPR000014
InterPro:IPR000700 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 Pfam:PF13185 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50113 SMART:SM00065 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 RefSeq:NP_951899.2 GeneID:2685412
KEGG:gsu:GSU0842 PATRIC:22024443 HOGENOM:HOG000275881
ProtClustDB:CLSK828051 BioCyc:GSUL243231:GH27-843-MONOMER
Uniprot:Q74EW7
Length = 754
Score = 138 (53.6 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 41/135 (30%), Positives = 67/135 (49%)
Query: 25 AVPDQFPAG--LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDV 82
A PD PAG R+L VDD+ + +MLRR Y+V + + AL + + G FD+
Sbjct: 619 AAPDGAPAGGDERILYVDDEEDLVATTGEMLRRLGYDVVATTGSVEALKLFTAQPGLFDL 678
Query: 83 VLSDVHMPDMDGFKLLEHIG-LEMDLPVIT-DGRVSAVMRGIRH-----GACDYLIKPIR 135
+++D MP + G +L + L D+PV+ G + R I G D L KP+
Sbjct: 679 IITDQTMPLLTGTELTRALRRLRPDVPVLLCSGFIDQDERTILEQARSAGIADVLRKPVD 738
Query: 136 EEELKNIWQHVVRKR 150
+E+ + ++ +R
Sbjct: 739 RDEMARAVRRILDRR 753
>TIGR_CMR|CJE_1397 [details] [associations]
symbol:CJE_1397 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 RefSeq:YP_179383.1
ProteinModelPortal:Q5HTK2 STRING:Q5HTK2 GeneID:3231903
KEGG:cjr:CJE1397 PATRIC:20044596 OMA:CREIREK ProtClustDB:CLSK879174
BioCyc:CJEJ195099:GJC0-1424-MONOMER Uniprot:Q5HTK2
Length = 223
Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 42/162 (25%), Positives = 79/162 (48%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+ VL+++DD ++L + L + +T AL++ +G +D ++ D+ +P +D
Sbjct: 2 INVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNV--GIQG-YDCLILDLTLPGID 58
Query: 94 GFKLLEHIGLEMDLPVITD---GRVSAVMRGIRHGACDYLIKPIREEEL-KNIWQHVVRK 149
G ++ I + ++P+I G +S + G++ GA DYL KP +E+ I + R
Sbjct: 59 GLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPYDPKEMYARIMSLIRRT 118
Query: 150 RWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFK 191
+ E+ +EN S + D + EI Y V T F+
Sbjct: 119 KRVEHTNNENINSAFKIDERRH---EITYEDKVLTLTPAEFE 157
>TIGR_CMR|BA_3229 [details] [associations]
symbol:BA_3229 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
KO:K02483 RefSeq:NP_845535.1 RefSeq:YP_019868.1 RefSeq:YP_029256.1
ProteinModelPortal:Q81NG7 DNASU:1083819
EnsemblBacteria:EBBACT00000008287 EnsemblBacteria:EBBACT00000017508
EnsemblBacteria:EBBACT00000020077 GeneID:1083819 GeneID:2815940
GeneID:2850665 KEGG:ban:BA_3229 KEGG:bar:GBAA_3229 KEGG:bat:BAS2999
OMA:ADNHTTP ProtClustDB:CLSK916969
BioCyc:BANT260799:GJAJ-3061-MONOMER
BioCyc:BANT261594:GJ7F-3168-MONOMER Uniprot:Q81NG7
Length = 224
Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 41/154 (26%), Positives = 75/154 (48%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+RVL+V+D+ IL + L Y+V C ALD + +D+++ D+ +P ++
Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYIN--MATYDLIVLDIMIPGIN 58
Query: 94 GFKLLEHIGLEMD----LPVITDGRVSAVMRGIRHGACDYLIKPIREEEL-KNIWQHVVR 148
G ++L+ + + L + + ++G+ GA DYL+KP +EL I + R
Sbjct: 59 GLQVLQKLRADNHTTSVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 118
Query: 149 KRWNENKEHENSGSLEETDHHK--RGSDEIEYAS 180
K N + E + + + + HK RG I +S
Sbjct: 119 KTGNTSNVFEIADLVVDCNMHKVTRGDQVITLSS 152
>TIGR_CMR|CHY_0606 [details] [associations]
symbol:CHY_0606 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_359462.1
ProteinModelPortal:Q3AEH2 STRING:Q3AEH2 GeneID:3728152
KEGG:chy:CHY_0606 PATRIC:21274355
BioCyc:CHYD246194:GJCN-606-MONOMER Uniprot:Q3AEH2
Length = 226
Score = 128 (50.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 50/177 (28%), Positives = 77/177 (43%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALD-ILRERKGCFDVVLSDVHMPDMD 93
++LVV+DD + L +L+ Y+ A++ RE FD+V+ D+++P D
Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYREN---FDLVILDLNLPKQD 59
Query: 94 GFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150
GF +L+ I D+PVI G + G G DYL KP EL + V+R+
Sbjct: 60 GFSVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRY 119
Query: 151 WNENKEHE--NSGSLE---ETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEE 202
E E G + +T + + +E S E FK RI KE+
Sbjct: 120 RKGRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFK-NPNRIFTKEQ 175
>TIGR_CMR|BA_0996 [details] [associations]
symbol:BA_0996 "sensor histidine kinase/response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR003018 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF02518 Pfam:PF13185 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 SMART:SM00065 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 KO:K03407
HSSP:P52934 RefSeq:NP_843497.1 RefSeq:YP_017624.1
RefSeq:YP_027206.1 ProteinModelPortal:Q81U88 DNASU:1088076
EnsemblBacteria:EBBACT00000011936 EnsemblBacteria:EBBACT00000016656
EnsemblBacteria:EBBACT00000023286 GeneID:1088076 GeneID:2814798
GeneID:2849014 KEGG:ban:BA_0996 KEGG:bar:GBAA_0996 KEGG:bat:BAS0932
HOGENOM:HOG000084747 OMA:TNNVFQE ProtClustDB:CLSK916050
BioCyc:BANT260799:GJAJ-1010-MONOMER
BioCyc:BANT261594:GJ7F-1055-MONOMER InterPro:IPR007891 Pfam:PF05227
Uniprot:Q81U88
Length = 896
Score = 138 (53.6 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 31/113 (27%), Positives = 61/113 (53%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+++VDDD + L+ L++ N+ T L+IL+ D++L D+ MP+MDG+
Sbjct: 778 IMIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTN-IDLILMDIMMPNMDGY 836
Query: 96 KLLEHIGLEM---DLPVIT---DGRVSAVMRGIRHGACDYLIKPIREEELKNI 142
+ +EHI + + ++P+I + + + GA DY+ KP+ +L ++
Sbjct: 837 ETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSV 889
>TIGR_CMR|CPS_2013 [details] [associations]
symbol:CPS_2013 "C4-dicarboxylate transport
transcriptional regulatory protein" species:167879 "Colwellia
psychrerythraea 34H" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
RefSeq:YP_268743.1 ProteinModelPortal:Q483M3 STRING:Q483M3
GeneID:3520238 KEGG:cps:CPS_2013 PATRIC:21467153 KO:K10126
OMA:RKHGLNF ProtClustDB:CLSK907021
BioCyc:CPSY167879:GI48-2083-MONOMER Uniprot:Q483M3
Length = 453
Score = 134 (52.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 37/119 (31%), Positives = 65/119 (54%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
V V+DD+ +EQ + V T SQA L+ L + VV+SD++MP MDG
Sbjct: 9 VFVIDDEEHIRSAIEQTFELRNFEVQTFSQAHQLLNQLSDTWP--GVVISDINMPKMDGH 66
Query: 96 KLL---EHIGLEMDLPVITD-GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150
+L+ ++I E+ ++T G +S ++ +R+GA D++ KP ++L + + + KR
Sbjct: 67 QLMAEVKNIDSELSTILLTGFGDISMAVKAMRNGAYDFIEKPFNNDDLVDTVKRALDKR 125
>UNIPROTKB|Q48Q61 [details] [associations]
symbol:PSPPH_0146 "Sigma-54 dependent DNA-binding response
regulator" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 EMBL:CP000058
GenomeReviews:CP000058_GR eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K10126
OMA:RKHGLNF RefSeq:YP_272455.1 ProteinModelPortal:Q48Q61
STRING:Q48Q61 GeneID:3560165 KEGG:psp:PSPPH_0146 PATRIC:19969281
ProtClustDB:CLSK869164 Uniprot:Q48Q61
Length = 461
Score = 134 (52.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 43/124 (34%), Positives = 68/124 (54%)
Query: 21 AADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAA-VALDILRERKGC 79
++D A+ Q ++V+++DDD + L Q L NV + S+A +A I R+ G
Sbjct: 2 SSDTAIDSQ----IQVVLIDDDSHLRQALRQTLDLAGLNVLSLSEATGLAERIGRDWPG- 56
Query: 80 FDVVLSDVHMPDMDGFKLLEHI-GLEMDLPV--ITD-GRVSAVMRGIRHGACDYLIKPIR 135
VV+SD+ M MDG +LL+ + + DLPV IT G V ++ +R GA D+L KP
Sbjct: 57 --VVVSDIRMQGMDGLELLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFA 114
Query: 136 EEEL 139
+ +
Sbjct: 115 SDAM 118
>TIGR_CMR|GSU_2946 [details] [associations]
symbol:GSU_2946 "DNA-binding heavy metal response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR006291
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K07665 TIGRFAMs:TIGR01387
HSSP:Q9WYN0 RefSeq:NP_953988.1 ProteinModelPortal:Q748Q5
GeneID:2688389 KEGG:gsu:GSU2946 PATRIC:22028753 OMA:GYMLEIP
ProtClustDB:CLSK743174 BioCyc:GSUL243231:GH27-2897-MONOMER
Uniprot:Q748Q5
Length = 223
Score = 127 (49.8 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 36/135 (26%), Positives = 67/135 (49%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+RVL+++D+ L++ + T + L + R +D+++ D+ +P D
Sbjct: 1 MRVLIIEDEKKAAAYLQKGFAENGFTADTAASGDDGLHLARTEN--YDLIILDIMLPGRD 58
Query: 94 GFKLLEHIGLE-MDLPVITDGRVSAV---MRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
G+++LE + E ++PVI AV +RG+ GA DYL+KP EL + ++R+
Sbjct: 59 GWEVLEELRKEGSEVPVIYLSARDAVHDRVRGLELGADDYLVKPFAFSELLARARTILRR 118
Query: 150 RWNENKEHENSGSLE 164
+ E + LE
Sbjct: 119 GPSRQPERLRADDLE 133
>UNIPROTKB|P0AFB8 [details] [associations]
symbol:glnG "NtrC transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0050906 "detection of
stimulus involved in sensory perception" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0009399 "nitrogen fixation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000160 "phosphorelay signal transduction system" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 InterPro:IPR010114
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0009399 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:L19201 eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 EMBL:X05173
EMBL:D16509 PIR:B30377 RefSeq:NP_418304.1 RefSeq:YP_491582.1
ProteinModelPortal:P0AFB8 SMR:P0AFB8 IntAct:P0AFB8
EnsemblBacteria:EBESCT00000001207 EnsemblBacteria:EBESCT00000001208
EnsemblBacteria:EBESCT00000001209 EnsemblBacteria:EBESCT00000015316
GeneID:12933634 GeneID:948361 KEGG:ecj:Y75_p3318 KEGG:eco:b3868
PATRIC:32123239 EchoBASE:EB0380 EcoGene:EG10385 KO:K07712
OMA:ARGQSNL ProtClustDB:PRK10923 BioCyc:EcoCyc:PROTEIN-NRI
BioCyc:ECOL316407:JW3839-MONOMER BindingDB:P0AFB8 ChEMBL:CHEMBL3552
Genevestigator:P0AFB8 GO:GO:0050906 TIGRFAMs:TIGR01818
Uniprot:P0AFB8
Length = 469
Score = 134 (52.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 42/128 (32%), Positives = 60/128 (46%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
V VVDDD + +LE+ L TT A L+ L + DV+LSD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTP--DVLLSDIRMPGMDGL 63
Query: 96 KLLEHIGLEMD-LPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151
LL+ I LPVI + A + + GA DYL KP +E + + + +
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI-SHY 122
Query: 152 NENKEHEN 159
E ++ N
Sbjct: 123 QEQQQPRN 130
>UNIPROTKB|Q48GE0 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:264730 "Pseudomonas syringae pv.
phaseolicola 1448A" [GO:0007155 "cell adhesion" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0007155 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:CP000058
GenomeReviews:CP000058_GR eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0030092
KO:K10943 RefSeq:YP_275543.1 ProteinModelPortal:Q48GE0
STRING:Q48GE0 GeneID:3555577 KEGG:psp:PSPPH_3385 PATRIC:19976178
OMA:FQMIIDT ProtClustDB:CLSK866333 Uniprot:Q48GE0
Length = 471
Score = 134 (52.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 38/110 (34%), Positives = 55/110 (50%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+ VL+V+DD + L + L Y A AL + E + F +V+SDV+MP MD
Sbjct: 3 INVLLVEDDRSLREALGETLELAGYGYQAVGSAEEAL-VAAEAQP-FSLVISDVNMPGMD 60
Query: 94 GFKLLEHI-GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEEL 139
G +LL + LPV+ G V + +R GA DYL+KP + L
Sbjct: 61 GHQLLSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKAL 110
>TIGR_CMR|BA_2212 [details] [associations]
symbol:BA_2212 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_844604.1 RefSeq:YP_018854.1 RefSeq:YP_028319.1
ProteinModelPortal:Q81R46 DNASU:1085543
EnsemblBacteria:EBBACT00000012844 EnsemblBacteria:EBBACT00000018535
EnsemblBacteria:EBBACT00000022147 GeneID:1085543 GeneID:2815122
GeneID:2848498 KEGG:ban:BA_2212 KEGG:bar:GBAA_2212 KEGG:bat:BAS2056
OMA:IRATESK ProtClustDB:CLSK918052
BioCyc:BANT260799:GJAJ-2124-MONOMER
BioCyc:BANT261594:GJ7F-2201-MONOMER Uniprot:Q81R46
Length = 227
Score = 127 (49.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 48/156 (30%), Positives = 78/156 (50%)
Query: 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
G R+L+V+D+ R+++ L Y A++ + G +D++L DV +P++
Sbjct: 2 GERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAME--KFGNGNWDLILLDVMLPNI 59
Query: 93 DGFKLLEHIGLEMD-LPVIT-DGRVSAV--MRGIRHGACDYLIKPIREEELKNIWQHVVR 148
G ++L I L+ +P+I R S V + G+ GA DY+ KP + EEL + +R
Sbjct: 60 SGLEVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLR 119
Query: 149 KRWNENKEHENSG----SL---EETDHHKRGSDEIE 177
N KE ENS L E+T KRG+ I+
Sbjct: 120 IS-NVVKEEENSSYQIADLYLDEKTREVKRGNSLID 154
>TAIR|locus:2042927 [details] [associations]
symbol:AT2G38300 "AT2G38300" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT004973
EMBL:AK117689 IPI:IPI00540370 RefSeq:NP_181364.2 UniGene:At.46670
ProteinModelPortal:Q8GYE4 SMR:Q8GYE4 IntAct:Q8GYE4 STRING:Q8GYE4
PRIDE:Q8GYE4 EnsemblPlants:AT2G38300.1 GeneID:818410
KEGG:ath:AT2G38300 TAIR:At2g38300 eggNOG:NOG310127
HOGENOM:HOG000090767 InParanoid:Q8GYE4 OMA:KDEEDRT PhylomeDB:Q8GYE4
ProtClustDB:CLSN2918908 Genevestigator:Q8GYE4 Uniprot:Q8GYE4
Length = 340
Score = 131 (51.2 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 34/100 (34%), Positives = 53/100 (53%)
Query: 174 DEIEYASSVNEGTEGTFKAQRKRISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSA 233
+E E EG E + S EE D + + +K PR+ W+ +LH +FV A
Sbjct: 15 EEEEEEEEEEEGEESKVSSN----STVEESDKKTKVRPYVRSKVPRLRWTPDLHLRFVRA 70
Query: 234 VNQLG-IDKAVPKRILELMNVPGLTRENVASHLQEINLQK 272
V +LG ++A PK + ++MN+ GL+ +V SHLQ +K
Sbjct: 71 VERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRSKK 110
>TIGR_CMR|SPO_0710 [details] [associations]
symbol:SPO_0710 "DNA-binding response regulator ChvI"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
RefSeq:YP_165964.1 ProteinModelPortal:Q5LVJ1 GeneID:3195446
KEGG:sil:SPO0710 PATRIC:23374691 KO:K14981 OMA:ETKVMER
ProtClustDB:CLSK864190 Uniprot:Q5LVJ1
Length = 234
Score = 127 (49.8 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 44/155 (28%), Positives = 75/155 (48%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++ +VDDD L + L + V T + ALD ++ D+ + D+ MP MDG
Sbjct: 3 KIALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKKLP--DMAVLDIKMPRMDG 60
Query: 95 FKLLEHIGLEMDLPVI----TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150
LL+ + + +PVI D + V+ G+R GA DY+ KP + L + ++R++
Sbjct: 61 MDLLQRLRQKTQMPVIFLTSKDDEIDEVL-GLRMGADDYVKKPFSQRLLVERIRALLRRQ 119
Query: 151 WNENKEHENSGSLE-ETDHHKRGS---DEIEYASS 181
E + +G+ ET +RG D + +A S
Sbjct: 120 --EAVAGDAAGTTTGETKVMERGHLRMDPLRHAVS 152
>UNIPROTKB|Q9KPC0 [details] [associations]
symbol:VC_2453 "Sensor histidine kinase/response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR008207 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF00672 Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073
SMART:SM00304 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
KO:K07678 OMA:ANQVISQ ProtClustDB:PRK11107 InterPro:IPR019247
Pfam:PF09984 HSSP:Q9A5I4 PIR:B82075 RefSeq:NP_232082.1
ProteinModelPortal:Q9KPC0 DNASU:2612995 GeneID:2612995
KEGG:vch:VC2453 PATRIC:20083927 Uniprot:Q9KPC0
Length = 927
Score = 137 (53.3 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 39/124 (31%), Positives = 64/124 (51%)
Query: 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87
D+ P L V+ VDD+ L+++ +L+ + V +C+ A++ + R+ FD++L D+
Sbjct: 661 DKLP--LCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQ--FDIILMDI 716
Query: 88 HMPDMDGF---KLLEHIGLEMDLPVIT-DGRVSAVMRG--IRHGACDYLIKPIREEELKN 141
MP MDG K ++ + D PVI A R ++ G DYL KPI E L+
Sbjct: 717 QMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQ 776
Query: 142 IWQH 145
+ H
Sbjct: 777 VLVH 780
>TIGR_CMR|VC_2453 [details] [associations]
symbol:VC_2453 "sensor histidine kinase/response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005524 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
KO:K07678 OMA:ANQVISQ ProtClustDB:PRK11107 InterPro:IPR019247
Pfam:PF09984 HSSP:Q9A5I4 PIR:B82075 RefSeq:NP_232082.1
ProteinModelPortal:Q9KPC0 DNASU:2612995 GeneID:2612995
KEGG:vch:VC2453 PATRIC:20083927 Uniprot:Q9KPC0
Length = 927
Score = 137 (53.3 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 39/124 (31%), Positives = 64/124 (51%)
Query: 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87
D+ P L V+ VDD+ L+++ +L+ + V +C+ A++ + R+ FD++L D+
Sbjct: 661 DKLP--LCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQ--FDIILMDI 716
Query: 88 HMPDMDGF---KLLEHIGLEMDLPVIT-DGRVSAVMRG--IRHGACDYLIKPIREEELKN 141
MP MDG K ++ + D PVI A R ++ G DYL KPI E L+
Sbjct: 717 QMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQ 776
Query: 142 IWQH 145
+ H
Sbjct: 777 VLVH 780
>TAIR|locus:2010297 [details] [associations]
symbol:AT1G49560 "AT1G49560" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC011807 EMBL:AK221631
IPI:IPI00546952 PIR:B96532 RefSeq:NP_564549.1 UniGene:At.38204
ProteinModelPortal:Q9FX84 SMR:Q9FX84 EnsemblPlants:AT1G49560.1
GeneID:841380 KEGG:ath:AT1G49560 TAIR:At1g49560 InParanoid:Q9FX84
OMA:SSMEDVE PhylomeDB:Q9FX84 ProtClustDB:CLSN2917204
Genevestigator:Q9FX84 Uniprot:Q9FX84
Length = 333
Score = 130 (50.8 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 43/120 (35%), Positives = 62/120 (51%)
Query: 216 KKPRVVWSVELHQQFVSAVNQLG-IDKAVPKRILELMNVPGLTRENVASHLQEINLQKFR 274
+K R W+ ELH++FV A+ QLG A PK+I E M GLT + V SHLQ K+R
Sbjct: 191 RKQRRCWNPELHRRFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSHLQ-----KYR 245
Query: 275 LYLKRLNG-VSQQGGIT------NSFCAPIETNVKLG-SLGRFDIQALAASG--QIPPQT 324
L++++ N +Q + NS E + G SL R + Q+ + G Q+P T
Sbjct: 246 LHIRKPNSNAEKQSAVVLGFNLWNSSAQDEEETCEGGESLKRSNAQSDSPQGPLQLPSTT 305
>UNIPROTKB|Q1D8M1 [details] [associations]
symbol:MXAN_2785 "Sensory box histidine kinase/response
regulator" species:246197 "Myxococcus xanthus DK 1622" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000014
InterPro:IPR000700 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00072 Pfam:PF00512
Pfam:PF00989 Pfam:PF02518 Pfam:PF08447 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50113 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0023014 SMART:SM00086
TIGRFAMs:TIGR00229 EMBL:CP000113 GenomeReviews:CP000113_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642 InterPro:IPR013656
Pfam:PF08448 RefSeq:YP_631002.1 ProteinModelPortal:Q1D8M1
IntAct:Q1D8M1 STRING:Q1D8M1 GeneID:4101404 KEGG:mxa:MXAN_2785
PATRIC:22648109 OMA:ATHLAVE BioCyc:MXAN246197:GIWU-2762-MONOMER
Uniprot:Q1D8M1
Length = 1077
Score = 137 (53.3 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 38/96 (39%), Positives = 52/96 (54%)
Query: 23 DVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDV 82
D+ P Q A LRVLVVDD+ +L ++ C VTT S + AL LRE FDV
Sbjct: 940 DIPCPPQL-ASLRVLVVDDEEDTRELLRSIIEACGGIVTTASSSEDALAELREAS--FDV 996
Query: 83 VLSDVHMPDMDGFKLLEHIGLEMDLPVITDGRVSAV 118
++SDV MP+ DG++ + + LP G + AV
Sbjct: 997 LVSDVGMPEEDGYRFIARVRA---LPEEQGGGIPAV 1029
>TAIR|locus:2205339 [details] [associations]
symbol:HRS1 "HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY
ROOT SHORTENING 1" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0016036 "cellular response to
phosphate starvation" evidence=IMP] [GO:0080022 "primary root
development" evidence=IMP] [GO:0000041 "transition metal ion
transport" evidence=RCA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC011810
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0080022 GO:GO:0016036 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000237574 EMBL:AF367336 EMBL:AY124865
IPI:IPI00529437 PIR:F86267 RefSeq:NP_563926.1 UniGene:At.20366
ProteinModelPortal:Q9FX67 SMR:Q9FX67 STRING:Q9FX67
EnsemblPlants:AT1G13300.1 GeneID:837890 KEGG:ath:AT1G13300
TAIR:At1g13300 eggNOG:NOG274505 InParanoid:Q9FX67 OMA:TRDESMR
PhylomeDB:Q9FX67 ProtClustDB:CLSN2687791 Genevestigator:Q9FX67
Uniprot:Q9FX67
Length = 344
Score = 130 (50.8 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 46/145 (31%), Positives = 67/145 (46%)
Query: 136 EEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRK 195
++ K+ W V+ WN+ +H E DE + G EG RK
Sbjct: 117 DKNTKSDWLKSVQL-WNQ-PDHPLLPKEERLQQETMTRDESMRKDPMVNGGEG-----RK 169
Query: 196 RISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGIDK-AVPKRILELMNVP 254
R + K+ G +K R WS +LH++F++A+ LG A PK+I E M V
Sbjct: 170 REAEKDGGGG----------RKQRRCWSSQLHRRFLNALQHLGGPHVATPKQIREFMKVD 219
Query: 255 GLTRENVASHLQEINLQKFRLYLKR 279
GLT + V SHLQ K+RL+ +R
Sbjct: 220 GLTNDEVKSHLQ-----KYRLHTRR 239
>UNIPROTKB|P14376 [details] [associations]
symbol:rcsC "RcsC sensory histidine kinase" species:83333
"Escherichia coli K-12" [GO:0018106 "peptidyl-histidine
phosphorylation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0023014 "signal transduction by phosphorylation"
evidence=IEA;IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0046777
"protein autophosphorylation" evidence=IMP] [GO:0044010
"single-species biofilm formation" evidence=IMP] [GO:0071470
"cellular response to osmotic stress" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA;RCA]
[GO:0016020 "membrane" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] [GO:0000155 "phosphorelay sensor kinase activity"
evidence=IEA;IDA] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 InterPro:IPR019017 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 Pfam:PF09456 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50112 PROSITE:PS51426 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0005622
GO:GO:0071470 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642
BRENDA:2.7.13.3 GO:GO:0018106 GO:GO:0044010 EMBL:M28242 EMBL:L11272
PIR:H64991 RefSeq:NP_416722.2 PDB:2AYX PDB:2AYY PDB:2AYZ
PDBsum:2AYX PDBsum:2AYY PDBsum:2AYZ ProteinModelPortal:P14376
SMR:P14376 DIP:DIP-10647N IntAct:P14376 MINT:MINT-1267658
PRIDE:P14376 EnsemblBacteria:EBESCT00000001645
EnsemblBacteria:EBESCT00000017555 GeneID:948993 KEGG:eco:b2218
PATRIC:32119795 EchoBASE:EB0815 EcoGene:EG10822
HOGENOM:HOG000122300 KO:K07677 OMA:HPINRSL ProtClustDB:PRK10841
BioCyc:EcoCyc:RCSC-MONOMER BioCyc:ECOL316407:JW5917-MONOMER
BioCyc:ECOL316407:JW5920-MONOMER EvolutionaryTrace:P14376
Genevestigator:P14376 Uniprot:P14376
Length = 949
Score = 136 (52.9 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 45/136 (33%), Positives = 66/136 (48%)
Query: 21 AADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCF 80
+ D AV D + +LVVDD R+L L Y T + AL++L K
Sbjct: 814 STDKAVSDN--DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS--KNHI 869
Query: 81 DVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIRE 136
D+VLSDV+MP+MDG++L + I L + LPVI + R + G L KP+
Sbjct: 870 DIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929
Query: 137 EELKN---IWQHVVRK 149
+ +K ++ VRK
Sbjct: 930 DVIKQTLTLYAERVRK 945
>TIGR_CMR|GSU_0963 [details] [associations]
symbol:GSU_0963 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00688 HSSP:P06143 RefSeq:NP_952017.2 GeneID:2687572
KEGG:gsu:GSU0963 PATRIC:22024702 ProtClustDB:CLSK828118
BioCyc:GSUL243231:GH27-974-MONOMER Uniprot:Q74EJ9
Length = 464
Score = 132 (51.5 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 40/130 (30%), Positives = 70/130 (53%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R++++D++ R++E +L Y V +++ A++ + G +D+V+SD+ MP MDG
Sbjct: 6 RIMLIDNEEGLCRMMEAVLADSGYAVKGYTRSFEAVEEFKA--GDWDLVVSDIKMPGMDG 63
Query: 95 FKLLEHIGLEMDL-PVI---TDGRVSAVMRGIRHGACDYLIKPIREEEL----KNIWQHV 146
++L+ I + L PVI V ++ +R GA D + KP EEL KN +H
Sbjct: 64 LEVLQRIKAKDPLVPVIMITAYATVETSIQALRRGAYDMVTKPFEPEELLYRVKNALKHT 123
Query: 147 VRKRWNENKE 156
+ EN+E
Sbjct: 124 --QLLEENRE 131
>TIGR_CMR|CHY_1125 [details] [associations]
symbol:CHY_1125 "response regulator" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR005471 Pfam:PF00072 Pfam:PF09339
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
RefSeq:YP_359971.1 ProteinModelPortal:Q3AD13 STRING:Q3AD13
GeneID:3727659 KEGG:chy:CHY_1125 PATRIC:21275390
HOGENOM:HOG000131195 OMA:RNEYLWI ProtClustDB:CLSK289825
BioCyc:CHYD246194:GJCN-1124-MONOMER Uniprot:Q3AD13
Length = 205
Score = 123 (48.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 40/158 (25%), Positives = 75/158 (47%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALD-ILRERKGCFDVVLSDVHMPDM 92
+RVL++DDD + +++ + A+ ++ +RE+ D+VL D HMP +
Sbjct: 1 MRVLIIDDDEGIRYTVGEIIAFMGWEAIKAENGAIGIEKFVREKP---DMVLVDYHMPAL 57
Query: 93 DGFKLLEHIG-LEMDLPVIT---DGRVSAVMRGIRHGACDYLIKPIREEEL-KNIWQHVV 147
DG +E I ++ +P+I D R + + GA D+ +KPI+ +L + H
Sbjct: 58 DGLDTVERIREIDQGVPIIVLTVDERQQIADKFLEVGASDFALKPIKAPDLIARLKVHAR 117
Query: 148 RKRWNENKEHENS-GSLEETDHHKRGSDEIEYASSVNE 184
N ++E ++ G L + + K + +EY E
Sbjct: 118 MIEINRSQEKKDQDGFLAKGINKKTFNLIVEYLKEQKE 155
>UNIPROTKB|Q9A5I5 [details] [associations]
symbol:pleD "Response regulator PleD" species:190650
"Caulobacter crescentus CB15" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0005525
GO:GO:0005737 GO:GO:0030154 GO:GO:0006355 GO:GO:0046872
GO:GO:0007049 SUPFAM:SSF55073 UniPathway:UPA00599 GO:GO:0052621
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 EMBL:AE005673
GenomeReviews:AE005673_GR KO:K02488 EMBL:L42554 PIR:E87554
RefSeq:NP_421265.1 ProteinModelPortal:Q9A5I5 SMR:Q9A5I5
DIP:DIP-29503N IntAct:Q9A5I5 GeneID:943650 KEGG:ccr:CC_2462
PATRIC:21301956 HOGENOM:HOG000167204 OMA:LAICERN
ProtClustDB:PRK09581 Uniprot:Q9A5I5
Length = 454
Score = 131 (51.2 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 45/136 (33%), Positives = 68/136 (50%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVVDD +R+LE L Y V+T AL + + D++L DV MP MDG
Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAA--RDLPDIILLDVMMPGMDG 61
Query: 95 FKL---LEHIGLEMDLPVIT----DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147
F + L+ +PV+ DGR + +G+ GA D+L KPI + L + +
Sbjct: 62 FTVCRKLKDDPTTRHIPVVLITALDGRGDRI-QGLESGASDFLTKPIDDVMLFARVRSLT 120
Query: 148 RKRW--NENKEHENSG 161
R + +E ++ E SG
Sbjct: 121 RFKLVIDELRQREASG 136
>TIGR_CMR|ECH_0773 [details] [associations]
symbol:ECH_0773 "putative response regulator/diguanylate
cyclase" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0004871 "signal transducer activity"
evidence=ISS] [GO:0007165 "signal transduction" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0005622 SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_507571.1 ProteinModelPortal:Q2GG62
STRING:Q2GG62 GeneID:3927207 KEGG:ech:ECH_0773 PATRIC:20576976
OMA:PDICARY BioCyc:ECHA205920:GJNR-776-MONOMER Uniprot:Q2GG62
Length = 458
Score = 131 (51.2 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 34/112 (30%), Positives = 59/112 (52%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
+VL+VDD +++L+ L YNV T + A+ I E+ D++L DV MP+MDG
Sbjct: 4 KVLIVDDLPANIKLLQAKLMSEYYNVLTATNGMDAIKIAEEKHP--DIILLDVMMPEMDG 61
Query: 95 FKLLEHIGLEMD---LPVIT----DGRVSAVMRGIRHGACDYLIKPIREEEL 139
++ + + + +P++ D + G+ +GA D+L KPI + L
Sbjct: 62 YETCKRLKSNPETTYIPIVMVTALDNTSDNRVSGLSYGADDFLTKPINDTAL 113
>UNIPROTKB|O69730 [details] [associations]
symbol:tcrX "Probable transcriptional regulatory protein
TcrX" species:1773 "Mycobacterium tuberculosis" [GO:0005515
"protein binding" evidence=IPI] [GO:0010106 "cellular response to
iron ion starvation" evidence=IEP] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677 EMBL:BX842584
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0010106
HOGENOM:HOG000034815 HSSP:Q9WYN0 KO:K02483 EMBL:X99370 PIR:F70801
RefSeq:NP_218282.1 RefSeq:YP_006517260.1 ProteinModelPortal:O69730
SMR:O69730 EnsemblBacteria:EBMYCT00000002612 GeneID:13317384
GeneID:886100 KEGG:mtu:Rv3765c KEGG:mtv:RVBD_3765c PATRIC:18156979
TubercuList:Rv3765c OMA:TELLSMA ProtClustDB:CLSK792706
Uniprot:O69730
Length = 234
Score = 125 (49.1 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 37/108 (34%), Positives = 55/108 (50%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
VLVVDD+ ++ LR +N+TT + A+ R ++ DVV+ DV +PDM G
Sbjct: 11 VLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRP--DVVVLDVMLPDMSGL 68
Query: 96 KLLEHIGLEMD-LPVITDGRVSAV---MRGIRHGACDYLIKPIREEEL 139
+L + E LPV+ AV + G+ G DY+ KP EE+
Sbjct: 69 DVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEV 116
>UNIPROTKB|Q06065 [details] [associations]
symbol:atoC "AtoC transcriptional activator; Az protein
inhibitor of ODC" species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0035556 "intracellular
signal transduction" evidence=IEA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS;IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0005737 GO:GO:0045893 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG2204 EMBL:U17902 EMBL:L13078 PIR:B64992
RefSeq:NP_416724.1 RefSeq:YP_490461.1 ProteinModelPortal:Q06065
SMR:Q06065 DIP:DIP-9190N IntAct:Q06065 PRIDE:Q06065
EnsemblBacteria:EBESCT00000003393 EnsemblBacteria:EBESCT00000015461
GeneID:12932980 GeneID:947444 KEGG:ecj:Y75_p2183 KEGG:eco:b2220
PATRIC:32119799 EchoBASE:EB1619 EcoGene:EG11668
HOGENOM:HOG000058489 KO:K07714 OMA:EERRIIM ProtClustDB:PRK11361
BioCyc:EcoCyc:ATOC-MONOMER BioCyc:ECOL316407:JW2214-MONOMER
Genevestigator:Q06065 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
Uniprot:Q06065
Length = 461
Score = 131 (51.2 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 38/118 (32%), Positives = 56/118 (47%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+L+VDD+ R+L + + AL + + DVVL D+ MP+MDG
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHP--DVVLMDIRMPEMDG 63
Query: 95 FKLLEHI-GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148
K L+ + E PVI V + +R GA DY+IKP +EL I Q ++
Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121
>TAIR|locus:2204518 [details] [associations]
symbol:AT1G14600 "AT1G14600" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AC010657 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AJ630486 EMBL:AY568658
IPI:IPI00523105 RefSeq:NP_172912.3 UniGene:At.41962
ProteinModelPortal:Q700D9 SMR:Q700D9 EnsemblPlants:AT1G14600.1
GeneID:838022 KEGG:ath:AT1G14600 TAIR:At1g14600 eggNOG:NOG329381
HOGENOM:HOG000239342 InParanoid:Q700D9 OMA:NIMNMER
Genevestigator:Q700D9 Uniprot:Q700D9
Length = 255
Score = 126 (49.4 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 27/50 (54%), Positives = 36/50 (72%)
Query: 218 PRVVWSVELHQQFVSAVNQLGID-KAVPKRILELMNVPGLTRENVASHLQ 266
PR+ W+ ELH+ FV AV+ LG KA PK +L++M+V GLT +V SHLQ
Sbjct: 24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQ 73
>UNIPROTKB|Q4KG71 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:220664 "Pseudomonas protegens Pf-5"
[GO:0007155 "cell adhesion" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
GO:GO:0007155 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
GO:GO:0030092 KO:K10943 OMA:FQMIIDT ProtClustDB:CLSK866333
RefSeq:YP_258762.1 ProteinModelPortal:Q4KG71 STRING:Q4KG71
GeneID:3477220 KEGG:pfl:PFL_1636 PATRIC:19872501
BioCyc:PFLU220664:GIX8-1644-MONOMER Uniprot:Q4KG71
Length = 468
Score = 131 (51.2 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 36/113 (31%), Positives = 56/113 (49%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
++VL+V+DD L L ++ A AL+ + F +V+SDV+MP MD
Sbjct: 3 IKVLLVEDDRALREALADTLLLAGHDYKAVGSAEEALEAVAAEP--FSLVVSDVNMPGMD 60
Query: 94 GFKLLEHI-GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNI 142
G +LL + + LPV+ G V + +R GA DYL+KP L ++
Sbjct: 61 GHQLLGLLRARQPQLPVLLMTAHGAVERAVEAMRQGAADYLVKPFEPRALLDL 113
>UNIPROTKB|Q884Y0 [details] [associations]
symbol:fleR "Sigma-54 dependent transcriptional
regulator/response regulator FleR" species:223283 "Pseudomonas
syringae pv. tomato str. DC3000" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0030092 "regulation of flagellum
assembly" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
GO:GO:0001539 GO:GO:0030092 KO:K10943 OMA:FQMIIDT
ProtClustDB:CLSK866333 RefSeq:NP_791779.1 HSSP:P41789
ProteinModelPortal:Q884Y0 GeneID:1183601 KEGG:pst:PSPTO_1956
PATRIC:19995186 BioCyc:PSYR223283:GJIX-1996-MONOMER Uniprot:Q884Y0
Length = 471
Score = 134 (52.2 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 38/110 (34%), Positives = 55/110 (50%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+ VL+V+DD + L + L Y A AL + E + F +V+SDV+MP MD
Sbjct: 3 INVLLVEDDRSLREALGETLELAGYGYQAVGSAEEAL-VAAEAQP-FSLVISDVNMPGMD 60
Query: 94 GFKLLEHI-GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEEL 139
G +LL + LPV+ G V + +R GA DYL+KP + L
Sbjct: 61 GHQLLSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKAL 110
Score = 41 (19.5 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 384 PQSIIS-VDDASTGFGVWASNSLG 406
PQ +IS ++A G G ++ +LG
Sbjct: 391 PQPVISSAENAGVGVGAESAGALG 414
>DICTYBASE|DDB_G0282927 [details] [associations]
symbol:dhkL "histidine kinase L" species:44689
"Dictyostelium discoideum" [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0023014 "signal transduction by
phosphorylation" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
[GO:0016310 "phosphorylation" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004871
"signal transducer activity" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
[GO:0004673 "protein histidine kinase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016301
"kinase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50113
SMART:SM00091 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 InterPro:IPR001610 dictyBase:DDB_G0282927
GO:GO:0005525 GO:GO:0005524 GenomeReviews:CM000153_GR GO:GO:0016020
GO:GO:0006355 GO:GO:0035556 GO:GO:0003924 GO:GO:0006184
GO:GO:0005622 EMBL:AAFI02000049 GO:GO:0023014 SMART:SM00086
TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642
EMBL:AF362373 EMBL:AF258796 RefSeq:XP_639305.1
ProteinModelPortal:Q54RP6 EnsemblProtists:DDB0191389 GeneID:8623876
KEGG:ddi:DDB_G0282927 OMA:FIERNDT Uniprot:Q54RP6
Length = 1709
Score = 137 (53.3 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 48/155 (30%), Positives = 76/155 (49%)
Query: 20 RAADVAVPDQFPAGL--RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERK 77
R A +Q P+ L +VLVVDD+ ++IL +ML+ V + A AL + +
Sbjct: 1553 RRASAEEQEQDPSKLLGKVLVVDDNHINIQILSKMLQTVGCEVDSVLSGADALAKINQSS 1612
Query: 78 G-CFDVVLSDVHMPDMDGFKLLEHIG---LEMDLP----VITDGRV--SAVMRGIRHGAC 127
G +D + D+ MPDMDGF++ I + LP + T V ++ G
Sbjct: 1613 GDSYDAIFLDIQMPDMDGFQVSRKIREREKKFSLPRVAIIATTANVFKEDQLKCFDAGMD 1672
Query: 128 DYLIKPIREEELKNIWQHVVRKRWNENKEHENSGS 162
D++ KPI+ E+K I K++ +N H+ SGS
Sbjct: 1673 DFISKPIKRAEIKEII-----KKYGKNGNHQ-SGS 1701
>UNIPROTKB|Q0PBM2 [details] [associations]
symbol:cheA "Chemotaxis histidine kinase" species:192222
"Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160
SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560 SUPFAM:SSF50341
EMBL:AL111168 GenomeReviews:AL111168_GR OMA:CDHGIED
ProtClustDB:CLSK872488 PIR:B81447 RefSeq:YP_002343725.1
ProteinModelPortal:Q0PBM2 IntAct:Q0PBM2 GeneID:904608
KEGG:cje:Cj0284c PATRIC:20057487 HOGENOM:HOG000255264
BioCyc:CJEJ192222:GJTS-263-MONOMER Uniprot:Q0PBM2
Length = 769
Score = 133 (51.9 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 35/122 (28%), Positives = 61/122 (50%)
Query: 27 PDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD 86
P + P+ +VL+VDD ++++ L ++ + AL+I++ + D +L D
Sbjct: 640 PKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEALNIIKSGEHDIDAMLID 699
Query: 87 VHMPDMDGFKLLEHI---GLEMDLPVIT-DGRVSAV--MRGIRHGACDYLIKPIREEELK 140
+ MP MDG+ L I +LP+I R S +RG+ G +Y+ KP E L+
Sbjct: 700 IEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRGVEVGMTEYITKPYSPEYLE 759
Query: 141 NI 142
N+
Sbjct: 760 NV 761
>UNIPROTKB|Q5HWI3 [details] [associations]
symbol:cheA "Chemotaxis protein CheA" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
[GO:0016301 "kinase activity" evidence=ISS] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0016301 GO:GO:0004871
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560
SUPFAM:SSF50341 OMA:CDHGIED ProtClustDB:CLSK872488
HOGENOM:HOG000255264 RefSeq:YP_178352.1 ProteinModelPortal:Q5HWI3
STRING:Q5HWI3 GeneID:3231094 KEGG:cjr:CJE0332 PATRIC:20042366
BioCyc:CJEJ195099:GJC0-337-MONOMER Uniprot:Q5HWI3
Length = 769
Score = 133 (51.9 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 35/122 (28%), Positives = 61/122 (50%)
Query: 27 PDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD 86
P + P+ +VL+VDD ++++ L ++ + AL+I++ + D +L D
Sbjct: 640 PKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEALNIIKSGEHDIDAMLID 699
Query: 87 VHMPDMDGFKLLEHI---GLEMDLPVIT-DGRVSAV--MRGIRHGACDYLIKPIREEELK 140
+ MP MDG+ L I +LP+I R S +RG+ G +Y+ KP E L+
Sbjct: 700 IEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRGVEVGMTEYITKPYSPEYLE 759
Query: 141 NI 142
N+
Sbjct: 760 NV 761
>TIGR_CMR|CJE_0332 [details] [associations]
symbol:CJE_0332 "chemotaxis protein CheA" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
[GO:0016301 "kinase activity" evidence=ISS] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0016301 GO:GO:0004871
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560
SUPFAM:SSF50341 OMA:CDHGIED ProtClustDB:CLSK872488
HOGENOM:HOG000255264 RefSeq:YP_178352.1 ProteinModelPortal:Q5HWI3
STRING:Q5HWI3 GeneID:3231094 KEGG:cjr:CJE0332 PATRIC:20042366
BioCyc:CJEJ195099:GJC0-337-MONOMER Uniprot:Q5HWI3
Length = 769
Score = 133 (51.9 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 35/122 (28%), Positives = 61/122 (50%)
Query: 27 PDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD 86
P + P+ +VL+VDD ++++ L ++ + AL+I++ + D +L D
Sbjct: 640 PKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEALNIIKSGEHDIDAMLID 699
Query: 87 VHMPDMDGFKLLEHI---GLEMDLPVIT-DGRVSAV--MRGIRHGACDYLIKPIREEELK 140
+ MP MDG+ L I +LP+I R S +RG+ G +Y+ KP E L+
Sbjct: 700 IEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRGVEVGMTEYITKPYSPEYLE 759
Query: 141 NI 142
N+
Sbjct: 760 NV 761
>TIGR_CMR|APH_0196 [details] [associations]
symbol:APH_0196 "nitrogen assimilation regulatory protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025944 PROSITE:PS00688 KO:K13599
ProtClustDB:CLSK749342 RefSeq:YP_504819.1 ProteinModelPortal:Q2GLD2
STRING:Q2GLD2 GeneID:3930623 KEGG:aph:APH_0196 PATRIC:20948964
OMA:MHARILI BioCyc:APHA212042:GHPM-230-MONOMER Uniprot:Q2GLD2
Length = 462
Score = 130 (50.8 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 48/163 (29%), Positives = 79/163 (48%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP--DMD 93
VL+VDD+ +++ +LR Y + A+ + ER+ DVVL D+ + D+D
Sbjct: 12 VLIVDDEADLRAMIQDILRDDNYVTRVAADGLSAMKLAYEREP--DVVLLDIWLKGSDID 69
Query: 94 GFKLLEHIGLEM-DLPVIT---DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
G +LE + LPVI G ++ ++ + GA DY+ KP E LK + + V
Sbjct: 70 GLSVLEKLKERYPSLPVIMISGHGNIATAVKSLHIGAYDYIEKPFTENRLKLVVKRAVES 129
Query: 150 RWNENKEHENSGSLEETDHHKRG-SDEIE-YASSVNEGTEGTF 190
+E++ S E D+ G S +I+ S+VN+ TF
Sbjct: 130 G-RLRRENDELRSFFE-DYELIGNSPQIKSLRSTVNKAAS-TF 169
>TAIR|locus:2194584 [details] [associations]
symbol:ARR4 "response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0010017
"red or far-red light signaling pathway" evidence=IMP] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS]
[GO:0010114 "response to red light" evidence=IMP] [GO:0009793
"embryo development ending in seed dormancy" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA;IMP] [GO:0042752
"regulation of circadian rhythm" evidence=IGI] [GO:0009735
"response to cytokinin stimulus" evidence=IEP] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IDA] [GO:0046777
"protein autophosphorylation" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009963 "positive
regulation of flavonoid biosynthetic process" evidence=RCA]
[GO:0010363 "regulation of plant-type hypersensitive response"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007623 GO:GO:0004674
GO:GO:0046777 GO:GO:0006351 GO:GO:0042752 GO:GO:0010114
GO:GO:0009793 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC007067 GO:GO:0010017
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2912722
EMBL:AB008487 EMBL:AB010915 EMBL:AF057282 IPI:IPI00523637
PIR:T48851 RefSeq:NP_172517.1 UniGene:At.22981 UniGene:At.67259
ProteinModelPortal:O82798 SMR:O82798 IntAct:O82798 STRING:O82798
EnsemblPlants:AT1G10470.1 GeneID:837587 KEGG:ath:AT1G10470
GeneFarm:4121 TAIR:At1g10470 InParanoid:O82798 OMA:KRIRDYM
PhylomeDB:O82798 Genevestigator:O82798 GermOnline:AT1G10470
Uniprot:O82798
Length = 259
Score = 125 (49.1 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 42/152 (27%), Positives = 78/152 (51%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDIL---RERKGC-FD-----VVL 84
+ VL VDD + ++E++LR VT AL+ L E+ FD +++
Sbjct: 34 VHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDNEKASAEFDRLKVDLII 93
Query: 85 SDVHMPDMDGFKLLEHIGLEM---DLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEE 138
+D MP M G++LL+ I ++PV+ ++ ++ + R + GA D+L+KP++ +
Sbjct: 94 TDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDFLLKPVKLAD 153
Query: 139 LKNIWQHVVR--KRWNENKEH--ENSGSLEET 166
+K + H+ + K N NK E+S S+ +
Sbjct: 154 VKRLRSHLTKDVKLSNGNKRKLPEDSSSVNSS 185
>TIGR_CMR|SO_4477 [details] [associations]
symbol:SO_4477 "transcriptional regulatory protein CpxR"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07662
HSSP:P08402 RefSeq:NP_719998.1 ProteinModelPortal:Q8E918
GeneID:1172072 KEGG:son:SO_4477 PATRIC:23528605 OMA:TTQEIHA
ProtClustDB:CLSK907666 Uniprot:Q8E918
Length = 228
Score = 123 (48.4 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 33/118 (27%), Positives = 60/118 (50%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+L++DDD+ +L Q+L + +T L++ +D++L DV +P ++G
Sbjct: 3 RILLIDDDLGLSELLGQLLELEGFKLTLAYDGKQGLELALATD--YDLILLDVMLPKLNG 60
Query: 95 FKLLEHIGLEMDLPVIT-DGRVSAVMR--GIRHGACDYLIKPIREEELKNIWQHVVRK 149
F++L + PV+ R + R G+ GA DYL KP + EL + ++R+
Sbjct: 61 FEVLRALRQHKQTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELIARIRAIIRR 118
>UNIPROTKB|Q74AX6 [details] [associations]
symbol:cheY40H-1 "Response receiver CheY associated with
MCPs of class 40H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6 GeneID:2685646
KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV ProtClustDB:CLSK828765
BioCyc:GSUL243231:GH27-2170-MONOMER Uniprot:Q74AX6
Length = 121
Score = 106 (42.4 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 31/116 (26%), Positives = 61/116 (52%)
Query: 35 RVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDIL-RERKGCFDVVLSDVHMPDM 92
R+L+ +D T +L ++ + V S AL +L RER D++++D++MPD+
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLPRER---LDLIITDINMPDI 59
Query: 93 DGFKLLEHIGLEMD---LPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNI 142
+G +L+ + + +P+ T+G +G+ GA +YL+KP L+++
Sbjct: 60 NGLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>TIGR_CMR|GSU_2223 [details] [associations]
symbol:GSU_2223 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6
GeneID:2685646 KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV
ProtClustDB:CLSK828765 BioCyc:GSUL243231:GH27-2170-MONOMER
Uniprot:Q74AX6
Length = 121
Score = 106 (42.4 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 31/116 (26%), Positives = 61/116 (52%)
Query: 35 RVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDIL-RERKGCFDVVLSDVHMPDM 92
R+L+ +D T +L ++ + V S AL +L RER D++++D++MPD+
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLPRER---LDLIITDINMPDI 59
Query: 93 DGFKLLEHIGLEMD---LPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNI 142
+G +L+ + + +P+ T+G +G+ GA +YL+KP L+++
Sbjct: 60 NGLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>TIGR_CMR|GSU_1671 [details] [associations]
symbol:GSU_1671 "response regulator/GGDEF domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P06143 HOGENOM:HOG000167205 RefSeq:NP_952722.1
ProteinModelPortal:Q74CK2 GeneID:2687445 KEGG:gsu:GSU1671
PATRIC:22026193 OMA:IADWLMP ProtClustDB:CLSK740862
BioCyc:GSUL243231:GH27-1671-MONOMER Uniprot:Q74CK2
Length = 322
Score = 126 (49.4 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 37/118 (31%), Positives = 62/118 (52%)
Query: 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH 88
+FP +L+VDD+ +LE L+ Y+V AL+I KG + +V++D
Sbjct: 13 RFP--FPILIVDDNRLLRTMLETSLKSAGYDVVMAENGKEALEIFN--KGYYPIVMTDWV 68
Query: 89 MPDMDGFKLLEHIGLEMD-----LPVIT--DGRVSAVMRGIRHGACDYLIKPIREEEL 139
MP+MDG +L I + + ++T D + + V+ G+ GA +YL+KP + EL
Sbjct: 69 MPEMDGLELCRAIRADCSGRYTYIILLTSQDSK-NDVIAGLEAGADEYLVKPAHQVEL 125
>TIGR_CMR|SO_1946 [details] [associations]
symbol:SO_1946 "transcriptional regulatory protein PhoP"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K07660
HSSP:Q9WYN0 RefSeq:NP_717553.1 ProteinModelPortal:Q8EFM4
GeneID:1169706 KEGG:son:SO_1946 PATRIC:23523521 OMA:PMEVTAF
ProtClustDB:CLSK906514 Uniprot:Q8EFM4
Length = 224
Score = 122 (48.0 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 42/137 (30%), Positives = 68/137 (49%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALD--ILRERKGCFDVVLSDVHMPD 91
+R+LVV+DD+ IL L+ L ++ Q A+ + DV + D+ +PD
Sbjct: 1 MRILVVEDDL----ILSHHLKVQLSDLGNQVQVALTAKEGFFQATNYPIDVAIVDLGLPD 56
Query: 92 MDGFKLLEHIGLE-MDLPV-ITDGRVS--AVMRGIRHGACDYLIKPIREEELKNIWQHVV 147
DG L++ + E + P+ I RV+ + G+ GA DYL+KP ++EEL +V
Sbjct: 57 QDGISLIQQLREEGVKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALV 116
Query: 148 RKRWNENKEHENSGSLE 164
R+ K SG L+
Sbjct: 117 RRSAGFVKPVITSGELK 133
>UNIPROTKB|Q9KR16 [details] [associations]
symbol:VC_1831 "Sensor histidine kinase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0023014
"signal transduction by phosphorylation" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF00672 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR004010 Pfam:PF02743
HSSP:Q56312 PIR:C82151 RefSeq:NP_231465.1 ProteinModelPortal:Q9KR16
DNASU:2613585 GeneID:2613585 KEGG:vch:VC1831 PATRIC:20082704
OMA:STNAKTA ProtClustDB:CLSK874555 Uniprot:Q9KR16
Length = 736
Score = 131 (51.2 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 44/128 (34%), Positives = 64/128 (50%)
Query: 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHM 89
+P GLRVL+V+D+ T + ILE +R + + A+ L+E FD+VL D HM
Sbjct: 599 YP-GLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESS--FDLVLMDNHM 655
Query: 90 PDMDGFKLLEHIGLEMDLP---VITDGRVSAVMRGIRH-----GACDYLIKPIREEELKN 141
P DG + I ++ LP ++ G + V + R GA D + KPI E EL
Sbjct: 656 PLKDGIQATREIR-QLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEHELDM 714
Query: 142 -IWQHVVR 148
+ QH R
Sbjct: 715 ALEQHSER 722
>TIGR_CMR|VC_1831 [details] [associations]
symbol:VC_1831 "sensor histidine kinase" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0000155 "phosphorelay sensor
kinase activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003660 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF00672 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005524 GO:GO:0006355 GO:GO:0035556
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR004010 Pfam:PF02743
HSSP:Q56312 PIR:C82151 RefSeq:NP_231465.1 ProteinModelPortal:Q9KR16
DNASU:2613585 GeneID:2613585 KEGG:vch:VC1831 PATRIC:20082704
OMA:STNAKTA ProtClustDB:CLSK874555 Uniprot:Q9KR16
Length = 736
Score = 131 (51.2 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 44/128 (34%), Positives = 64/128 (50%)
Query: 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHM 89
+P GLRVL+V+D+ T + ILE +R + + A+ L+E FD+VL D HM
Sbjct: 599 YP-GLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESS--FDLVLMDNHM 655
Query: 90 PDMDGFKLLEHIGLEMDLP---VITDGRVSAVMRGIRH-----GACDYLIKPIREEELKN 141
P DG + I ++ LP ++ G + V + R GA D + KPI E EL
Sbjct: 656 PLKDGIQATREIR-QLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEHELDM 714
Query: 142 -IWQHVVR 148
+ QH R
Sbjct: 715 ALEQHSER 722
>UNIPROTKB|Q9KKK0 [details] [associations]
symbol:VC_A1105 "DNA-binding response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:Q9WYN0 KO:K02483 PIR:C82378
RefSeq:NP_233484.1 ProteinModelPortal:Q9KKK0 DNASU:2612779
GeneID:2612779 KEGG:vch:VCA1105 PATRIC:20086728 OMA:HGYTVDW
ProtClustDB:CLSK789271 Uniprot:Q9KKK0
Length = 218
Score = 121 (47.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 45/178 (25%), Positives = 83/178 (46%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+R+L+V+DD ++ L R Y V + + L+ + F ++ D+ +PDMD
Sbjct: 1 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQ--FTALILDLTLPDMD 58
Query: 94 GFKLLEHI---GLEMDLPVITD-GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
G ++L I G + + ++T +S ++G+ GA +Y+ KP EEL + ++R+
Sbjct: 59 GLEVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR 118
Query: 150 RWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFK------AQRKRISAKE 201
+E + G L+ + EI YA + T +K Q R+ +KE
Sbjct: 119 SSGSAEELISVGELDLS----LSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKE 172
>TIGR_CMR|VC_A1105 [details] [associations]
symbol:VC_A1105 "DNA-binding response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:Q9WYN0 KO:K02483 PIR:C82378
RefSeq:NP_233484.1 ProteinModelPortal:Q9KKK0 DNASU:2612779
GeneID:2612779 KEGG:vch:VCA1105 PATRIC:20086728 OMA:HGYTVDW
ProtClustDB:CLSK789271 Uniprot:Q9KKK0
Length = 218
Score = 121 (47.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 45/178 (25%), Positives = 83/178 (46%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+R+L+V+DD ++ L R Y V + + L+ + F ++ D+ +PDMD
Sbjct: 1 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQ--FTALILDLTLPDMD 58
Query: 94 GFKLLEHI---GLEMDLPVITD-GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
G ++L I G + + ++T +S ++G+ GA +Y+ KP EEL + ++R+
Sbjct: 59 GLEVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR 118
Query: 150 RWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFK------AQRKRISAKE 201
+E + G L+ + EI YA + T +K Q R+ +KE
Sbjct: 119 SSGSAEELISVGELDLS----LSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKE 172
>TIGR_CMR|GSU_0598 [details] [associations]
symbol:GSU_0598 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_951656.1 ProteinModelPortal:Q74FK9 GeneID:2688651
KEGG:gsu:GSU0598 PATRIC:22023947 OMA:SGMEVLK ProtClustDB:CLSK827940
BioCyc:GSUL243231:GH27-583-MONOMER Uniprot:Q74FK9
Length = 470
Score = 134 (52.2 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 34/108 (31%), Positives = 63/108 (58%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
VLVVDD+ L ++L + Y+V T + +AL+ L++ + +V++D+ MP M G
Sbjct: 6 VLVVDDEAIIREGLRRILEKEGYHVETSASGQIALERLQDEN--YGLVITDLKMPGMSGM 63
Query: 96 KLLEHIG-LEMDLPVIT-DG--RVSAVMRGIRHGACDYLIKPIREEEL 139
++L+ I L+ ++PVI G V + +++GA DY+ KP +++
Sbjct: 64 EVLKAIKVLQPEVPVIIITGFSTVDTAVEAMKNGAFDYIAKPFTPDQI 111
Score = 38 (18.4 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 231 VSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQE 267
V+ +Q G+ VP+ + EL RE +++
Sbjct: 389 VATDSQAGVGGYVPQNVEELKETKRQIRERAVEPIEK 425
Score = 37 (18.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 131 IKPIREEELKNIWQHVVRKRWNENKEHENSGSL 163
++PI E + Q + R WN + E +G L
Sbjct: 420 VEPI---EKAFVLQALKRNNWNITRAAEETGML 449
>TIGR_CMR|BA_0577 [details] [associations]
symbol:BA_0577 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR024187 Pfam:PF00072 PIRSF:PIRSF006171 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GO:GO:0003677 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
HOGENOM:HOG000034816 RefSeq:NP_843111.2 RefSeq:YP_026824.1
ProteinModelPortal:Q81VC0 DNASU:1087932
EnsemblBacteria:EBBACT00000008382 EnsemblBacteria:EBBACT00000024391
GeneID:1087932 GeneID:2849175 KEGG:ban:BA_0577 KEGG:bat:BAS0546
PATRIC:18778756 KO:K11615 ProtClustDB:CLSK915867
BioCyc:BANT260799:GJAJ-606-MONOMER Uniprot:Q81VC0
Length = 235
Score = 122 (48.0 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 37/137 (27%), Positives = 68/137 (49%)
Query: 34 LRVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD 91
++VL+V+DD + L + V + A+++L E + D+VL D+ MP+
Sbjct: 2 IKVLIVEDDPMVAMLNTHYLEQVGGFELVQAVNSIKSAIEVLEESR--IDLVLLDIFMPE 59
Query: 92 MDGFKLLEHIG---LEMDLPVITDGR-VSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147
GF+LL +I E+D+ +I+ + ++ + +++G DYLIKP E K +
Sbjct: 60 ETGFELLMYIRNQEKEIDIMMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALT-IY 118
Query: 148 RKRWNENKEHENSGSLE 164
R++ KE + E
Sbjct: 119 REKLTFMKEQQKISQSE 135
>UNIPROTKB|Q9AE24 [details] [associations]
symbol:rprY "Transcriptional regulatory protein RprY"
species:295405 "Bacteroides fragilis YCH46" [GO:0000160
"phosphorelay signal transduction system" evidence=NAS] [GO:0003677
"DNA binding" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000160 eggNOG:COG0745 EMBL:S59000 EMBL:AP006841
GenomeReviews:AP006841_GR PIR:S33662 RefSeq:YP_101140.1
ProteinModelPortal:Q9AE24 GeneID:3084945 KEGG:bfr:BF3864
PATRIC:21053264 OMA:CVLDVMM ProtClustDB:CLSK823045 Uniprot:Q9AE24
Length = 236
Score = 122 (48.0 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 36/128 (28%), Positives = 62/128 (48%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
LR+L+ +DD +L + L+ Y+ + K +D+ + DV MP D
Sbjct: 8 LRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGFKAFLKNK--YDLCVFDVMMPKKD 65
Query: 94 GFKLLEHI-GLEMDLPVI--TDGRVSA-VMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
GF L + + ++P+I T + ++ G + GA DY+ KP EEL + ++R+
Sbjct: 66 GFTLAQEVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAILRR 125
Query: 150 -RWNENKE 156
R +NKE
Sbjct: 126 VRGKKNKE 133
>TIGR_CMR|BA_4833 [details] [associations]
symbol:BA_4833 "DNA-binding response regulator PhoP"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0006796
"phosphate-containing compound metabolic process" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 KO:K07658
RefSeq:NP_847036.1 RefSeq:YP_021478.1 RefSeq:YP_030731.1
ProteinModelPortal:Q81L01 SMR:Q81L01 DNASU:1086976
EnsemblBacteria:EBBACT00000010602 EnsemblBacteria:EBBACT00000014654
EnsemblBacteria:EBBACT00000019808 GeneID:1086976 GeneID:2814633
GeneID:2851563 KEGG:ban:BA_4833 KEGG:bar:GBAA_4833 KEGG:bat:BAS4484
OMA:LYLGRHK ProtClustDB:CLSK887707
BioCyc:BANT260799:GJAJ-4541-MONOMER
BioCyc:BANT261594:GJ7F-4695-MONOMER Uniprot:Q81L01
Length = 239
Score = 122 (48.0 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 38/138 (27%), Positives = 70/138 (50%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALD-ILRERKGCFDVVLSDVHMPDMD 93
R+LVVDD+ L ++E L++ + V T +AL ER D+++ D+ +P MD
Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERP---DLIILDLMLPKMD 60
Query: 94 GFKLLEHIGLEMDL-PVIT----DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148
G ++ + + L+ + P++ D V+ G+ GA DY+ KP E+ + ++R
Sbjct: 61 GMEVCKELRLQRVMTPILMLTAKDDEFDKVL-GLELGADDYMTKPFSPREVVARVKAILR 119
Query: 149 KRWNENKEHENSGSLEET 166
+ + +E S EE+
Sbjct: 120 RTKLQQEEQVTETSDEES 137
>TIGR_CMR|DET_0177 [details] [associations]
symbol:DET_0177 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_180925.1 ProteinModelPortal:Q3ZA24 STRING:Q3ZA24
GeneID:3230544 KEGG:det:DET0177 PATRIC:21607433 OMA:CIIKNEA
ProtClustDB:CLSK837633 BioCyc:DETH243164:GJNF-177-MONOMER
Uniprot:Q3ZA24
Length = 226
Score = 121 (47.7 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 34/135 (25%), Positives = 64/135 (47%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPD 91
+ +L+V+D+ + +LR ++ +T C A++ + K D+VL D+ +PD
Sbjct: 1 MNILIVEDNDAAASTISSILRLSYHDAKITVCRTGYEAVESVNSDKA--DLVLLDLGLPD 58
Query: 92 MDGFKLLEHIGLEMDLPVITDGRVSA---VMRGIRHGACDYLIKPIREEELKNIWQHVVR 148
M+G K+L+ I P+I V++ + GA +Y+ KP R E + +
Sbjct: 59 MNGLKVLDEIHPITGAPIIVVTACEDEENVLKALEQGADEYITKPFRHLEFLARVKKALS 118
Query: 149 KRWNENKEHENSGSL 163
K ++N SG +
Sbjct: 119 KNISQNTAIIKSGDI 133
>UNIPROTKB|Q485M3 [details] [associations]
symbol:flrC "Flagellar regulatory protein C" species:167879
"Colwellia psychrerythraea 34H" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030092 "regulation of flagellum assembly"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 HOGENOM:HOG000058489 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 RefSeq:YP_268242.1 ProteinModelPortal:Q485M3
STRING:Q485M3 GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207
KO:K10943 OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 127 (49.8 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 37/125 (29%), Positives = 61/125 (48%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++LVV+DD L L Y+ AL L+ + D+V+SDV M M G
Sbjct: 5 KILVVEDDAGLREALIDTLSLADYHCVEADSGEAALLALKSQH--VDIVISDVQMGGMSG 62
Query: 95 FKLLEHI-GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKN-IWQHVVRK 149
LL+ I +LPV+ G + ++ ++ GAC+Y+ KP + L N + Q++ +
Sbjct: 63 LSLLKSIKNHHANLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFAPQVLLNMVSQYIPPQ 122
Query: 150 RWNEN 154
N+N
Sbjct: 123 VVNKN 127
>TIGR_CMR|CPS_1500 [details] [associations]
symbol:CPS_1500 "flagellar regulatory protein C"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
RefSeq:YP_268242.1 ProteinModelPortal:Q485M3 STRING:Q485M3
GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207 KO:K10943
OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 127 (49.8 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 37/125 (29%), Positives = 61/125 (48%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++LVV+DD L L Y+ AL L+ + D+V+SDV M M G
Sbjct: 5 KILVVEDDAGLREALIDTLSLADYHCVEADSGEAALLALKSQH--VDIVISDVQMGGMSG 62
Query: 95 FKLLEHI-GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKN-IWQHVVRK 149
LL+ I +LPV+ G + ++ ++ GAC+Y+ KP + L N + Q++ +
Sbjct: 63 LSLLKSIKNHHANLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFAPQVLLNMVSQYIPPQ 122
Query: 150 RWNEN 154
N+N
Sbjct: 123 VVNKN 127
>TIGR_CMR|CHY_2047 [details] [associations]
symbol:CHY_2047 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_360866.1
ProteinModelPortal:Q3AAG8 SMR:Q3AAG8 STRING:Q3AAG8 GeneID:3727851
KEGG:chy:CHY_2047 PATRIC:21277175 KO:K07658 OMA:WGYEFSG
ProtClustDB:CLSK2772343 BioCyc:CHYD246194:GJCN-2046-MONOMER
Uniprot:Q3AAG8
Length = 231
Score = 121 (47.7 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 39/140 (27%), Positives = 71/140 (50%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+++LVVDD+ + +++ L R Y V AL+I++ K D+V+ D+ +P M
Sbjct: 1 MKILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVK--KELPDLVILDIMLPGMS 58
Query: 94 GFKLLEHIGLE---MDLPVIT-DGRVSAVMR--GIRHGACDYLIKPIREEELKNIWQHVV 147
G ++ ++I ++P+I R V + G+ GA DY++KP EL + +
Sbjct: 59 GLEVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDYMVKPFSPREL--VARVKA 116
Query: 148 RKRWNENKEHENSGSLEETD 167
R R E +E + G ++ D
Sbjct: 117 RLRRLEGREGKKEGIIKIKD 136
>TAIR|locus:2163852 [details] [associations]
symbol:ATS "AT5G42630" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:0048481 "ovule development" evidence=IMP] [GO:0080060
"integument development" evidence=IGI;IMP] [GO:0005618 "cell wall"
evidence=IDA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0005618 GO:GO:0030154 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0044212
PROSITE:PS51293 HSSP:O49397 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 GO:GO:0080060 HOGENOM:HOG000241649 EMBL:AB013391
EMBL:AY048691 EMBL:BT026053 IPI:IPI00541325 IPI:IPI00892123
RefSeq:NP_001119363.1 RefSeq:NP_199077.1 UniGene:At.26412
ProteinModelPortal:Q9FJV5 SMR:Q9FJV5 STRING:Q9FJV5
EnsemblPlants:AT5G42630.1 GeneID:834270 KEGG:ath:AT5G42630
TAIR:At5g42630 eggNOG:NOG280455 InParanoid:Q9FJV5 OMA:PQIYGRD
PhylomeDB:Q9FJV5 ProtClustDB:CLSN2916355 Genevestigator:Q9FJV5
Uniprot:Q9FJV5
Length = 276
Score = 123 (48.4 bits), Expect = 0.00010, P = 0.00010
Identities = 27/52 (51%), Positives = 34/52 (65%)
Query: 216 KKPRVVWSVELHQQFVSAVNQLG-IDKAVPKRILELMNVPGLTRENVASHLQ 266
+ PR+ W+ LH FV AV LG ++A PK +LELMNV LT +V SHLQ
Sbjct: 104 RAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 155
>UNIPROTKB|Q9KS16 [details] [associations]
symbol:VC_1445 "Sensor histidine kinase/response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198 RefSeq:NP_231088.1
ProteinModelPortal:Q9KS16 DNASU:2614077 GeneID:2614077
KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS ProtClustDB:CLSK874379
Uniprot:Q9KS16
Length = 572
Score = 128 (50.1 bits), Expect = 0.00011, P = 0.00011
Identities = 33/111 (29%), Positives = 60/111 (54%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+LVV+D T +++ +L + Y+VT A+++L E+ FD+VL D+ MP MDG
Sbjct: 456 ILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELL-EKNHVFDLVLMDISMPIMDGI 514
Query: 96 ---KLLEHIGLEMDLPVITDGRVSAVMRG-IRHGACDYLIKPIREEELKNI 142
K+L +E+ + +T + + I G D ++KPIR +++ +
Sbjct: 515 AATKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEV 565
>TIGR_CMR|VC_1445 [details] [associations]
symbol:VC_1445 "sensor histidine kinase/response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198
RefSeq:NP_231088.1 ProteinModelPortal:Q9KS16 DNASU:2614077
GeneID:2614077 KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS
ProtClustDB:CLSK874379 Uniprot:Q9KS16
Length = 572
Score = 128 (50.1 bits), Expect = 0.00011, P = 0.00011
Identities = 33/111 (29%), Positives = 60/111 (54%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+LVV+D T +++ +L + Y+VT A+++L E+ FD+VL D+ MP MDG
Sbjct: 456 ILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELL-EKNHVFDLVLMDISMPIMDGI 514
Query: 96 ---KLLEHIGLEMDLPVITDGRVSAVMRG-IRHGACDYLIKPIREEELKNI 142
K+L +E+ + +T + + I G D ++KPIR +++ +
Sbjct: 515 AATKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEV 565
>TIGR_CMR|CPS_0081 [details] [associations]
symbol:CPS_0081 "response regulator/GGDEF domain protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 RefSeq:YP_266849.1
ProteinModelPortal:Q48AR4 STRING:Q48AR4 DNASU:3523347
GeneID:3523347 KEGG:cps:CPS_0081 PATRIC:21463585
HOGENOM:HOG000276492 OMA:CPEEFYC ProtClustDB:CLSK2309571
BioCyc:CPSY167879:GI48-184-MONOMER Uniprot:Q48AR4
Length = 419
Score = 126 (49.4 bits), Expect = 0.00011, P = 0.00011
Identities = 36/109 (33%), Positives = 58/109 (53%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+LVVDD + + ++L+R +NV T + AL+ L + K +V++D+ MP MDG
Sbjct: 126 ILVVDDSSSARNHIVELLKRRNFNVITANNGVQALEKLAQHKN-IKMVITDLEMPAMDGI 184
Query: 96 KL---LEHIGLEMDLPVI-TDGRVSAV--MRGIRHGACDYLIKPIREEE 138
+L + + L VI G + + R I++GA D+L KP EE
Sbjct: 185 ELTNEIRRVYTREQLAVIGISGASNGIHSARFIKNGADDFLRKPFCPEE 233
>UNIPROTKB|P0AFU4 [details] [associations]
symbol:glrR "GlrR DNA-binding transcriptional activator"
species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA;IMP] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IEP] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IMP] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=ISS;IDA] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0005737
GO:GO:0006355 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:U36841 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
EMBL:M16778 EMBL:S67014 EMBL:Z21843 PIR:A65033 RefSeq:NP_417049.1
RefSeq:YP_490782.1 ProteinModelPortal:P0AFU4 SMR:P0AFU4
IntAct:P0AFU4 MINT:MINT-1317436 PRIDE:P0AFU4
EnsemblBacteria:EBESCT00000000551 EnsemblBacteria:EBESCT00000014286
GeneID:12930208 GeneID:947042 KEGG:ecj:Y75_p2507 KEGG:eco:b2554
PATRIC:32120507 EchoBASE:EB1262 EcoGene:EG11285 KO:K07715
OMA:FAEIQKH ProtClustDB:PRK15115 BioCyc:EcoCyc:EG11285-MONOMER
BioCyc:ECOL316407:JW2538-MONOMER Genevestigator:P0AFU4
Uniprot:P0AFU4
Length = 444
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 37/113 (32%), Positives = 57/113 (50%)
Query: 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP 90
PA L L+VDDD L++L L Y+V T A L +L K D+V+SD+ M
Sbjct: 5 PAHL--LLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREK--VDLVISDLRMD 60
Query: 91 DMDGFKLLEHIG-LEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEEL 139
+MDG +L I ++ +PVI G + + + G +L KP+ ++ L
Sbjct: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDAL 113
>UNIPROTKB|Q9KN24 [details] [associations]
symbol:VC_A0142 "C4-dicarboxylate transport transcriptional
regulatory protein" species:243277 "Vibrio cholerae O1 biovar El
Tor str. N16961" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
HSSP:P13632 PIR:H82495 RefSeq:NP_232542.1 ProteinModelPortal:Q9KN24
DNASU:2612915 GeneID:2612915 KEGG:vch:VCA0142 PATRIC:20084859
OMA:FARKGRI ProtClustDB:CLSK869530 Uniprot:Q9KN24
Length = 450
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 35/122 (28%), Positives = 60/122 (49%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+ +++DD + Q L+ ++V + A AL + ++ F V+SDV +PD DG
Sbjct: 5 RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQS--FAAVVSDVRLPDTDG 62
Query: 95 FKLLEHI-GLEMDLPVIT---DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150
LL + ++ +PVI G V ++ + GA D++ KP + E L N V +
Sbjct: 63 LSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQY 122
Query: 151 WN 152
N
Sbjct: 123 QN 124
>TIGR_CMR|VC_A0142 [details] [associations]
symbol:VC_A0142 "C4-dicarboxylate transport
transcriptional regulatory protein" species:686 "Vibrio cholerae O1
biovar El Tor" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
HSSP:P13632 PIR:H82495 RefSeq:NP_232542.1 ProteinModelPortal:Q9KN24
DNASU:2612915 GeneID:2612915 KEGG:vch:VCA0142 PATRIC:20084859
OMA:FARKGRI ProtClustDB:CLSK869530 Uniprot:Q9KN24
Length = 450
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 35/122 (28%), Positives = 60/122 (49%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+ +++DD + Q L+ ++V + A AL + ++ F V+SDV +PD DG
Sbjct: 5 RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQS--FAAVVSDVRLPDTDG 62
Query: 95 FKLLEHI-GLEMDLPVIT---DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150
LL + ++ +PVI G V ++ + GA D++ KP + E L N V +
Sbjct: 63 LSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQY 122
Query: 151 WN 152
N
Sbjct: 123 QN 124
>TIGR_CMR|GSU_1658 [details] [associations]
symbol:GSU_1658 "response regulator/GGDEF domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K02488 HSSP:P06143 RefSeq:NP_952709.1
ProteinModelPortal:Q74CL4 GeneID:2685291 KEGG:gsu:GSU1658
PATRIC:22026165 HOGENOM:HOG000131459 OMA:NINFLEE
ProtClustDB:CLSK924527 BioCyc:GSUL243231:GH27-1650-MONOMER
Uniprot:Q74CL4
Length = 458
Score = 126 (49.4 bits), Expect = 0.00013, P = 0.00013
Identities = 38/154 (24%), Positives = 79/154 (51%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVV+DD ++ +L+ Y V T + L L +++ + +V++D+ MP M G
Sbjct: 3 RILVVEDDRFFRQMYVDLLKEEGYEVDTVASGTEGLKRLEKQE--YHLVITDLVMPGMSG 60
Query: 95 FKLLEHIGLE---MDLPVITD-GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150
++L + + +D+ ++T + + + +++GA DY++KP +E K+ +R
Sbjct: 61 IEVLSRVKQKAPNVDVILVTGHANLESAVYALKNGARDYILKPFNHDEFKHTVALCFEQR 120
Query: 151 W--NENKEHENSGSLEETDHHKRGSDEIEYASSV 182
NEN E + +L + + ++E S+V
Sbjct: 121 RLINENYELKELLNLFQVGQNIANCIDLERLSAV 154
>TIGR_CMR|GSU_3198 [details] [associations]
symbol:GSU_3198 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_954239.1
HSSP:P04042 ProteinModelPortal:Q747R7 GeneID:2687002
KEGG:gsu:GSU3198 PATRIC:22029251 OMA:PSARIIM ProtClustDB:CLSK829154
BioCyc:GSUL243231:GH27-3148-MONOMER Uniprot:Q747R7
Length = 121
Score = 103 (41.3 bits), Expect = 0.00013, P = 0.00013
Identities = 34/117 (29%), Positives = 57/117 (48%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTT-CSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
RV++VDD + +L +L Y V S A A+ R+ + DVV D+ MP +
Sbjct: 4 RVMIVDDALFMRNMLRGILEDAGYEVVAEASDGAEAVVTFRDVRP--DVVTLDIIMPVKN 61
Query: 94 GFKLLEHI-GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146
G + L I ++ V+ G+ S V + GA D+++KP E +K++ + V
Sbjct: 62 GIEALREIMAIDPKARVVICSAVGQESLVDKARSVGAKDFILKPFNPERVKDVMKQV 118
>TIGR_CMR|BA_4777 [details] [associations]
symbol:BA_4777 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_846982.1 RefSeq:YP_021423.1 RefSeq:YP_030680.1
ProteinModelPortal:Q81L55 DNASU:1083888
EnsemblBacteria:EBBACT00000012704 EnsemblBacteria:EBBACT00000017584
EnsemblBacteria:EBBACT00000020354 GeneID:1083888 GeneID:2815717
GeneID:2851624 KEGG:ban:BA_4777 KEGG:bar:GBAA_4777 KEGG:bat:BAS4433
OMA:DISIQEM ProtClustDB:CLSK917419
BioCyc:BANT260799:GJAJ-4490-MONOMER
BioCyc:BANT261594:GJ7F-4640-MONOMER Uniprot:Q81L55
Length = 230
Score = 120 (47.3 bits), Expect = 0.00013, P = 0.00013
Identities = 32/108 (29%), Positives = 58/108 (53%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L+V+DD++ ++E+ L + + VT S +D KG FD+++ D+ MP +DG
Sbjct: 5 ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYL--KGSFDLIILDIMMPKLDGL 62
Query: 96 KLLEHIGLEMDLPVIT----DGRVSAVMRGIRHGACDYLIKPIREEEL 139
+++ I + +P++ D V + G+ GA DY+ KP EL
Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAV-GLGLGADDYICKPFSMIEL 109
>TIGR_CMR|DET_0170 [details] [associations]
symbol:DET_0170 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180918.1 ProteinModelPortal:Q3ZA31 STRING:Q3ZA31
GeneID:3230558 KEGG:det:DET0170 PATRIC:21607423 OMA:RIRVNIR
ProtClustDB:CLSK741609 BioCyc:DETH243164:GJNF-170-MONOMER
Uniprot:Q3ZA31
Length = 232
Score = 120 (47.3 bits), Expect = 0.00013, P = 0.00013
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPD 91
+++L+++DD I++ + +V S L ++ K D ++ D+ +PD
Sbjct: 1 MKILIIEDDAQTTEIVKLSFKLGWPDVRLLEASSGESGLAMVETAKP--DAIILDIGLPD 58
Query: 92 MDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYLIKPIREEEL 139
+ G+++L I L +LPVI S +++ + GA DYL+KP R+ EL
Sbjct: 59 ISGYEVLRQIRLFSELPVIILTIRNEESDIVKALSLGADDYLVKPFRQMEL 109
>TAIR|locus:2097870 [details] [associations]
symbol:RR5 "response regulator 5" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IMP] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0010114 "response to red light"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 GO:GO:0005737 GO:GO:0009536
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0010114 GO:GO:0009736 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AL049658
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008488 EMBL:AB010916
EMBL:AF057281 EMBL:AY072390 EMBL:AY114698 IPI:IPI00516847
PIR:T06673 PIR:T50855 PIR:T50856 RefSeq:NP_190393.1
UniGene:At.24915 ProteinModelPortal:Q9SB04 SMR:Q9SB04 IntAct:Q9SB04
STRING:Q9SB04 EnsemblPlants:AT3G48100.1 GeneID:823965
KEGG:ath:AT3G48100 GeneFarm:4122 TAIR:At3g48100 InParanoid:Q9SB04
OMA:LEANDIY PhylomeDB:Q9SB04 ProtClustDB:CLSN2684027
Genevestigator:Q9SB04 GermOnline:AT3G48100 Uniprot:Q9SB04
Length = 184
Score = 116 (45.9 bits), Expect = 0.00013, P = 0.00013
Identities = 40/153 (26%), Positives = 71/153 (46%)
Query: 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDIL------RERKGCFDV-- 82
P L VL VDD + + +E++LR VT A AL L G D+
Sbjct: 22 PKLLHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSSVGFEDLKI 81
Query: 83 --VLSDVHMPDMDGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPI 134
+++D MP M G++LL+ I ++PV+ ++ + + R + GA D+L+KP+
Sbjct: 82 NLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLKPV 141
Query: 135 REEELKNIWQHVVRKRWNENKEHENSGSLEETD 167
+ ++K + +++ K + LE D
Sbjct: 142 KLADVKRLRDSLMKAEERAFKNIMHKRELEAND 174
>TIGR_CMR|BA_1497 [details] [associations]
symbol:BA_1497 "DNA-binding response regulator ResD"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009060 "aerobic respiration"
evidence=ISS] [GO:0009061 "anaerobic respiration" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 RefSeq:NP_843949.1
RefSeq:YP_018120.1 RefSeq:YP_027655.1 ProteinModelPortal:Q81SZ6
DNASU:1087158 EnsemblBacteria:EBBACT00000009602
EnsemblBacteria:EBBACT00000013896 EnsemblBacteria:EBBACT00000020931
GeneID:1087158 GeneID:2818509 GeneID:2850870 KEGG:ban:BA_1497
KEGG:bar:GBAA_1497 KEGG:bat:BAS1386 KO:K07775 OMA:VWHYEFF
ProtClustDB:CLSK873069 BioCyc:BANT260799:GJAJ-1460-MONOMER
BioCyc:BANT261594:GJ7F-1522-MONOMER Uniprot:Q81SZ6
Length = 238
Score = 120 (47.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 29/108 (26%), Positives = 53/108 (49%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+L+VDD+ R+L+ L R Y + AL++ + +D++L D+ MP DG
Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQND--YDLILLDLMMPGKDG 63
Query: 95 FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEEL 139
++ + + + P+I G ++G G DY++KP E+
Sbjct: 64 IEVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREV 111
Score = 39 (18.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 135 REEELKNIWQH 145
RE+ LK +WQ+
Sbjct: 182 REQLLKEVWQY 192
>TIGR_CMR|SO_0570 [details] [associations]
symbol:SO_0570 "response regulator" species:211586
"Shewanella oneidensis MR-1" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000276268 OMA:GISEQLH
ProtClustDB:CLSK869552 HSSP:Q56312 RefSeq:NP_716205.1
ProteinModelPortal:Q8EJ98 GeneID:1168440 KEGG:son:SO_0570
PATRIC:23520826 Uniprot:Q8EJ98
Length = 331
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 35/117 (29%), Positives = 62/117 (52%)
Query: 34 LRVLVVDDDITCLRILEQML-RRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
+ VL+ DD + + + L + +T + A LD +R KG +VV D++MP M
Sbjct: 3 ISVLICDDSAMARKQMARTLPKEWDVEITYATNGAEGLDAIRAGKG--EVVFLDLNMPVM 60
Query: 93 DGFKLLEHIGLEMDLP---VITDG--RVSAVMRGIRHGACDYLIKPIREEELKNIWQ 144
DG+++L+ + + DLP ++ G ++ A R GA D++ KP+ + + NI Q
Sbjct: 61 DGYEVLQTVQ-QNDLPALIIVVSGDIQIKAHERVKALGALDFIQKPVSADAISNILQ 116
>TIGR_CMR|GSU_2041 [details] [associations]
symbol:GSU_2041 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489 KO:K07714
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_953090.1 ProteinModelPortal:Q74BK0 GeneID:2687998
KEGG:gsu:GSU2041 PATRIC:22026943 OMA:HMLQVML ProtClustDB:CLSK828703
BioCyc:GSUL243231:GH27-1944-MONOMER Uniprot:Q74BK0
Length = 455
Score = 128 (50.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 41/128 (32%), Positives = 63/128 (49%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVVDD+ +L MLR+ Y + AL + +D +L D+ MP MDG
Sbjct: 4 RILVVDDEENMRHMLCAMLRKQGYEAVEAADGEAAL--AQASAAAYDFILCDIRMPIMDG 61
Query: 95 FKLLEHIGLEMDLP--VI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV-R 148
L + +LP VI G V A + ++ GA DY+ KP + +E+ + + R
Sbjct: 62 VGFLRTFQ-KAELPGTVIMMSAYGTVDAAIACMKEGAYDYVSKPFKNDEILLVLRKAEER 120
Query: 149 KRW-NENK 155
+R NEN+
Sbjct: 121 ERLKNENR 128
Score = 41 (19.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 559 AARQVPGLVSNVGD-IQGSYGAKSGEVFDLGSL 590
AA PG V + + I+ ++ GE+ D GSL
Sbjct: 352 AAYGWPGNVRELENCIERAFILSDGEILDAGSL 384
>TIGR_CMR|GSU_0841 [details] [associations]
symbol:GSU_0841 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0005622 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K02481
RefSeq:NP_951898.1 ProteinModelPortal:Q74EW8 GeneID:2687205
KEGG:gsu:GSU0841 PATRIC:22024441 OMA:PEVIIFT ProtClustDB:CLSK828050
BioCyc:GSUL243231:GH27-828-MONOMER Uniprot:Q74EW8
Length = 466
Score = 125 (49.1 bits), Expect = 0.00017, P = 0.00017
Identities = 42/139 (30%), Positives = 65/139 (46%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L++DDD + L M++R + V + L+ + G FDVVL DV MPD +G
Sbjct: 4 ILIIDDDDSMRSSLWHMVKRMGHQVDSAPTLREGLE--KASTGAFDVVLLDVSMPDGNGL 61
Query: 96 KLLEHIG---LEMDLPVITD-GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK-R 150
+L I E ++ +IT G + IR GA DY+ K LK + H+VR +
Sbjct: 62 DILPDIQRTPAEPEVIIITGYGNPDSAELAIRSGAWDYIEKGT---SLKAMTLHLVRALQ 118
Query: 151 WNENKEHENSGSLEETDHH 169
+ + K S+ H
Sbjct: 119 YRQEKIASRGASVTALKRH 137
>TIGR_CMR|BA_5106 [details] [associations]
symbol:BA_5106 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847292.1 RefSeq:YP_030989.1 RefSeq:YP_052651.1
ProteinModelPortal:Q81K99 DNASU:1084409
EnsemblBacteria:EBBACT00000012632 EnsemblBacteria:EBBACT00000014721
EnsemblBacteria:EBBACT00000022679 GeneID:1084409 GeneID:2821239
GeneID:2851460 KEGG:ban:BA_5106 KEGG:bar:GBAA_5106 KEGG:bat:BAS4745
OMA:VVINPER ProtClustDB:CLSK873134
BioCyc:BANT260799:GJAJ-4799-MONOMER
BioCyc:BANT261594:GJ7F-4958-MONOMER Uniprot:Q81K99
Length = 232
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 36/136 (26%), Positives = 66/136 (48%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+ +L+ DD+ ++E L + Y+V + A+ I+ + D+V+ D+ MP MD
Sbjct: 4 ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP--IDLVVLDIMMPKMD 61
Query: 94 GFKLLEHIGLEMDLPVI-TDGRVSAV--MRGIRHGACDYLIKPIREEELKNIWQHVVRK- 149
G+++ I + +P+I + S + G+ GA DY+ KP EL +R+
Sbjct: 62 GYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRF 121
Query: 150 -RWNENKEHENSGSLE 164
N+ K EN +L+
Sbjct: 122 LTLNQPKVAENKSALQ 137
>TIGR_CMR|SPO_0251 [details] [associations]
symbol:SPO_0251 "DNA-binding response regulator PetR"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 KO:K07659 RefSeq:YP_165515.1
ProteinModelPortal:Q5LX38 GeneID:3196152 KEGG:sil:SPO0251
PATRIC:23373753 OMA:DRGQAQE ProtClustDB:CLSK933195 Uniprot:Q5LX38
Length = 233
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 35/107 (32%), Positives = 50/107 (46%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L+VDDD +L++ L R + VT A A IL FD+++ DV MP DG
Sbjct: 8 LLIVDDDERIRDLLKKFLMRHGFLVTAARDAEHARRILSGLD--FDLIVMDVMMPGEDGV 65
Query: 96 KLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEEL 139
L + + P++ G + G+ GA DYL KP EL
Sbjct: 66 SLTRALRQTLSTPILLLTARGETEHRIAGLEAGADDYLAKPFEPREL 112
>UNIPROTKB|Q74CN0 [details] [associations]
symbol:GSU1643 "Response receiver-modulated diguanylate
cyclase" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P06143 HOGENOM:HOG000167205
ProtClustDB:CLSK740862 RefSeq:NP_952694.1 ProteinModelPortal:Q74CN0
GeneID:2687340 KEGG:gsu:GSU1643 PATRIC:22026135 OMA:CIRIIAG
BioCyc:GSUL243231:GH27-1627-MONOMER Uniprot:Q74CN0
Length = 316
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 37/110 (33%), Positives = 58/110 (52%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
VL+ +D+ +LE LR Y+V AL R + G F +V++D MP MDG
Sbjct: 12 VLIAEDNALLRAVLEGNLREIGYDVVVAIDGKDAL--ARIQSGYFPLVITDWVMPVMDGP 69
Query: 96 KL---LEHIGLE-MDLPVITDGRVS--AVMRGIRHGACDYLIKPIREEEL 139
+L + +GLE ++ R S +++ G+ GA +YL+KP+ EEL
Sbjct: 70 ELCRAVRSLGLEHYTYLILLTSRDSKESIISGLEAGADEYLVKPVTPEEL 119
>TIGR_CMR|GSU_1643 [details] [associations]
symbol:GSU_1643 "GGDEF/response regulator receiver domain
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P06143 HOGENOM:HOG000167205
ProtClustDB:CLSK740862 RefSeq:NP_952694.1 ProteinModelPortal:Q74CN0
GeneID:2687340 KEGG:gsu:GSU1643 PATRIC:22026135 OMA:CIRIIAG
BioCyc:GSUL243231:GH27-1627-MONOMER Uniprot:Q74CN0
Length = 316
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 37/110 (33%), Positives = 58/110 (52%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
VL+ +D+ +LE LR Y+V AL R + G F +V++D MP MDG
Sbjct: 12 VLIAEDNALLRAVLEGNLREIGYDVVVAIDGKDAL--ARIQSGYFPLVITDWVMPVMDGP 69
Query: 96 KL---LEHIGLE-MDLPVITDGRVS--AVMRGIRHGACDYLIKPIREEEL 139
+L + +GLE ++ R S +++ G+ GA +YL+KP+ EEL
Sbjct: 70 ELCRAVRSLGLEHYTYLILLTSRDSKESIISGLEAGADEYLVKPVTPEEL 119
>TIGR_CMR|CPS_3245 [details] [associations]
symbol:CPS_3245 "sigma 54-dependent DNA-binding response
regulator" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 RefSeq:YP_269935.1
ProteinModelPortal:Q47Z35 STRING:Q47Z35 GeneID:3518970
KEGG:cps:CPS_3245 PATRIC:21469467 OMA:YAKEENK
ProtClustDB:CLSK749831 BioCyc:CPSY167879:GI48-3288-MONOMER
Uniprot:Q47Z35
Length = 488
Score = 125 (49.1 bits), Expect = 0.00018, P = 0.00018
Identities = 39/119 (32%), Positives = 63/119 (52%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGC-FDVVLSDVHMPDMD 93
R+L VDD+ LR LE++ ++ + T S ALD++ E C DV++SD +MP+MD
Sbjct: 8 RILFVDDEPEILRSLERITKKLDAVILTASSGQDALDLINE---CPVDVIVSDFNMPNMD 64
Query: 94 GFKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 152
G +LLE + I+ V V+ G HG + ++ I +IW + +K W+
Sbjct: 65 GNQLLEQVAK------ISPETVRMVLTG--HGDMEMIVNLINNG---HIWGFL-QKPWD 111
>TIGR_CMR|BA_5715 [details] [associations]
symbol:BA_5715 "DNA-binding response regulator YycF"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847861.1 RefSeq:YP_022401.1 RefSeq:YP_031556.1
ProteinModelPortal:Q81JJ0 SMR:Q81JJ0 IntAct:Q81JJ0 DNASU:1085472
EnsemblBacteria:EBBACT00000008903 EnsemblBacteria:EBBACT00000016684
EnsemblBacteria:EBBACT00000023802 GeneID:1085472 GeneID:2816053
GeneID:2852841 KEGG:ban:BA_5715 KEGG:bar:GBAA_5715 KEGG:bat:BAS5319
KO:K07668 OMA:KEQESND ProtClustDB:CLSK2391406
BioCyc:BANT260799:GJAJ-5392-MONOMER
BioCyc:BANT261594:GJ7F-5568-MONOMER Uniprot:Q81JJ0
Length = 235
Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
Identities = 37/140 (26%), Positives = 67/140 (47%)
Query: 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
G ++LVVDD+ IL+ L + + + A++ E + D+VL D+ +P
Sbjct: 3 GKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQP--DMVLLDIMLPGK 60
Query: 93 DGFKLLEHIGLEMDLPVIT----DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148
DG ++ I ++P+I D + V+ G+ GA DY+ KP EL + R
Sbjct: 61 DGLEVCREIRKSSEMPIIMLTAKDSEIDKVL-GLELGADDYVTKPFSTREL------LAR 113
Query: 149 KRWNENKEHENSGSLEETDH 168
+ N + H+ G+ E+ ++
Sbjct: 114 VKANLRR-HQQGGAAEKEEN 132
>TAIR|locus:505006489 [details] [associations]
symbol:KAN3 "AT4G17695" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0007275
GO:GO:0005634 GO:GO:0030154 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
HSSP:O49397 InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
EMBL:Z97344 HOGENOM:HOG000241649 EMBL:AY048690 IPI:IPI00544036
RefSeq:NP_567535.1 UniGene:At.26411 ProteinModelPortal:Q941I2
SMR:Q941I2 PaxDb:Q941I2 PRIDE:Q941I2 EnsemblPlants:AT4G17695.1
GeneID:827490 KEGG:ath:AT4G17695 TAIR:At4g17695 eggNOG:NOG253351
InParanoid:Q941I2 OMA:SSNENEW PhylomeDB:Q941I2
ProtClustDB:CLSN2917571 Genevestigator:Q941I2 Uniprot:Q941I2
Length = 322
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 41/109 (37%), Positives = 55/109 (50%)
Query: 216 KKPRVVWSVELHQQFVSAVNQLG-IDKAVPKRILELMNVPGLTRENVASHLQEINLQKFR 274
+ PR+ W+ LH FV AV LG ++A PK +LELM+V LT +V SHLQ K
Sbjct: 163 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKST 222
Query: 275 LYLKRLNGVS--QQGGITNSFC-APIETNV--KLGSLGRFDIQALAASG 318
+G S + G NS A T + S RF ++A A+SG
Sbjct: 223 EKPTTSSGQSDCENGSQVNSEREARNLTGLWNNSSSEARFQLKAKASSG 271
>SGD|S000001249 [details] [associations]
symbol:SKN7 "Nuclear response regulator and transcription
factor" species:4932 "Saccharomyces cerevisiae" [GO:0043565
"sequence-specific DNA binding" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IDA;IMP] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043619 "regulation of transcription from RNA polymerase II
promoter in response to oxidative stress" evidence=IMP] [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA;IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;IMP;IDA;IPI] [GO:0008361 "regulation of cell
size" evidence=IMP] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;IMP;IDA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000304 "response to singlet oxygen"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=TAS] InterPro:IPR000232 InterPro:IPR001789
InterPro:IPR014402 Pfam:PF00072 Pfam:PF00447 PIRSF:PIRSF002595
PRINTS:PR00056 PROSITE:PS00434 PROSITE:PS50110 SMART:SM00415
SMART:SM00448 SGD:S000001249 GO:GO:0005634 EMBL:BK006934
GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0008361 GO:GO:0006970 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000304
GO:GO:0043619 EMBL:U00029 RefSeq:NP_012078.3 GeneID:856615
KEGG:sce:YHR208W KO:K00826 GeneTree:ENSGT00610000087034
RefSeq:NP_012076.3 GeneID:856613 KEGG:sce:YHR206W KO:K15859
OMA:QHGMNDI OrthoDB:EOG4TMV98 EMBL:U00485 EMBL:X83031 EMBL:AY723828
PIR:A49344 ProteinModelPortal:P38889 SMR:P38889 DIP:DIP-2403N
IntAct:P38889 STRING:P38889 PaxDb:P38889 PeptideAtlas:P38889
EnsemblFungi:YHR206W CYGD:YHR206w HOGENOM:HOG000248776
NextBio:982535 Genevestigator:P38889 GermOnline:YHR206W
Uniprot:P38889
Length = 622
Score = 126 (49.4 bits), Expect = 0.00020, P = 0.00020
Identities = 54/252 (21%), Positives = 104/252 (41%)
Query: 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
G VL+V+DD +++ + LR+ V S A+ L + + +D+VL D+ MP++
Sbjct: 376 GFHVLLVEDDAVSIQLCSKFLRKYGCTVQVVSDGLSAISTLEKYR--YDLVLMDIVMPNL 433
Query: 93 DGFKLLEHI-GLEMDLPVIT-DGRV--SAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148
DG + + + P+I G + ++ ++HG D L KP ++L +I ++
Sbjct: 434 DGATATSIVRSFDNETPIIAMTGNIMNQDLITYLQHGMNDILAKPFTRDDLHSILIRYLK 493
Query: 149 KR---WNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDG 205
R + NS ++ + S+ +++NE + +
Sbjct: 494 DRIPLCEQQLPPRNSSPQTHSNTNTANSNP----NTINEQSLAMLPQDNPSTTTPVTPGA 549
Query: 206 ELESDD---PSTTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVP----GLTR 258
+ S ++ ++ + QQ +A+ D A+P E+ VP G T
Sbjct: 550 SISSAQHVQQGQQEQQHQIFHAQQQQQHHNAIANARSDVAIPNLEHEINTVPHSSMGSTP 609
Query: 259 ENVASHLQEINL 270
+ S LQE L
Sbjct: 610 QLPQSTLQENQL 621
>TAIR|locus:2170723 [details] [associations]
symbol:ARR6 "response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009536 GO:GO:0006355 GO:GO:0006351 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2684027
EMBL:AB008489 EMBL:AB008491 EMBL:AB009053 EMBL:BT004799
IPI:IPI00547780 PIR:T50857 PIR:T50860 RefSeq:NP_201097.1
UniGene:At.24207 ProteinModelPortal:Q9ZWS6 SMR:Q9ZWS6 IntAct:Q9ZWS6
STRING:Q9ZWS6 EnsemblPlants:AT5G62920.1 GeneID:836412
KEGG:ath:AT5G62920 GeneFarm:4123 TAIR:At5g62920 InParanoid:Q9ZWS6
OMA:DDSQEIK PhylomeDB:Q9ZWS6 Genevestigator:Q9ZWS6
GermOnline:AT5G62920 Uniprot:Q9ZWS6
Length = 186
Score = 115 (45.5 bits), Expect = 0.00020, P = 0.00020
Identities = 36/127 (28%), Positives = 64/127 (50%)
Query: 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDIL----RERKGCFD----- 81
P L VL VDD + +E++LR VT A AL L E+ F+
Sbjct: 22 PDPLHVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDVEEKSVGFEDLKVN 81
Query: 82 VVLSDVHMPDMDGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR 135
++++D MP M G++LL+ I ++PV+ ++ + + R + GA D+L+KP++
Sbjct: 82 LIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLKPVK 141
Query: 136 EEELKNI 142
++K +
Sbjct: 142 LSDVKRL 148
>UNIPROTKB|Q8ECK1 [details] [associations]
symbol:dctD "C4-dicarboxylate-responsive two component
Sigma54-dependent signal transduction system response regulator
DctD" species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0015740 "C4-dicarboxylate transport" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
KO:K10126 ProtClustDB:CLSK907021 RefSeq:NP_718697.1 HSSP:P13632
ProteinModelPortal:Q8ECK1 GeneID:1170827 KEGG:son:SO_3138
PATRIC:23525948 OMA:RMASARY Uniprot:Q8ECK1
Length = 459
Score = 124 (48.7 bits), Expect = 0.00021, P = 0.00021
Identities = 37/132 (28%), Positives = 67/132 (50%)
Query: 24 VAVPDQFPAGLRVLVVDDDITCLRILEQMLR-RCLYNVTTCSQAAVALDILRERKGCFDV 82
++VP+ VL++DD+ +L Q+ + +A + R+ G V
Sbjct: 1 MSVPNSIQ-DYSVLIIDDEPHIGTVLVQLFELEGIKAFAATDPKGIAKLLDRDWAG---V 56
Query: 83 VLSDVHMPDMDGFKLLEHIG-LEMDLPVI--TD-GRVSAVMRGIRHGACDYLIKPIREEE 138
V+SDV+MP +DG L++ I + DLPV+ T G ++ + ++ GA D+L KP E
Sbjct: 57 VISDVNMPQLDGISLMQQIREQDADLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEH 116
Query: 139 LKNIWQHVVRKR 150
+ ++ + + KR
Sbjct: 117 MLDVVKRALDKR 128
>TIGR_CMR|SO_3138 [details] [associations]
symbol:SO_3138 "C4-dicarboxylate transport transcriptional
regulatory protein" species:211586 "Shewanella oneidensis MR-1"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
KO:K10126 ProtClustDB:CLSK907021 RefSeq:NP_718697.1 HSSP:P13632
ProteinModelPortal:Q8ECK1 GeneID:1170827 KEGG:son:SO_3138
PATRIC:23525948 OMA:RMASARY Uniprot:Q8ECK1
Length = 459
Score = 124 (48.7 bits), Expect = 0.00021, P = 0.00021
Identities = 37/132 (28%), Positives = 67/132 (50%)
Query: 24 VAVPDQFPAGLRVLVVDDDITCLRILEQMLR-RCLYNVTTCSQAAVALDILRERKGCFDV 82
++VP+ VL++DD+ +L Q+ + +A + R+ G V
Sbjct: 1 MSVPNSIQ-DYSVLIIDDEPHIGTVLVQLFELEGIKAFAATDPKGIAKLLDRDWAG---V 56
Query: 83 VLSDVHMPDMDGFKLLEHIG-LEMDLPVI--TD-GRVSAVMRGIRHGACDYLIKPIREEE 138
V+SDV+MP +DG L++ I + DLPV+ T G ++ + ++ GA D+L KP E
Sbjct: 57 VISDVNMPQLDGISLMQQIREQDADLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEH 116
Query: 139 LKNIWQHVVRKR 150
+ ++ + + KR
Sbjct: 117 MLDVVKRALDKR 128
>TIGR_CMR|GSU_2212 [details] [associations]
symbol:GSU_2212 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953261.1 ProteinModelPortal:Q74AY7 GeneID:2687085
KEGG:gsu:GSU2212 PATRIC:22027279 OMA:SSAMRRQ ProtClustDB:CLSK924580
BioCyc:GSUL243231:GH27-2150-MONOMER Uniprot:Q74AY7
Length = 128
Score = 101 (40.6 bits), Expect = 0.00021, P = 0.00021
Identities = 31/107 (28%), Positives = 58/107 (54%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKG-CFDVVLSDVHMPDMDG 94
VL+V+D T +++ L+R + ++ +A+ +D L++ D++L+D++MP MDG
Sbjct: 6 VLIVEDSPTMRQLIAFALKR-IPGISIV-EASDGVDGLKKLSAHAIDLILTDINMPVMDG 63
Query: 95 FKLLEHIGLEMD---LPVI---TDGRVSAVMRGIRHGACDYLIKPIR 135
KL+ + + LP+ T+G R + GA Y+ KPI+
Sbjct: 64 LKLVSLVRSDPSHRHLPIAIITTEGAAEDRERALALGANAYITKPIQ 110
>UNIPROTKB|Q4K714 [details] [associations]
symbol:PFL_4888 "Sigma-54 dependent DNA-binding response
regulator" species:220664 "Pseudomonas protegens Pf-5" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0006355
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
KO:K02481 RefSeq:YP_261969.1 ProteinModelPortal:Q4K714
STRING:Q4K714 GeneID:3479299 KEGG:pfl:PFL_4888 PATRIC:19879244
OMA:CVERATI ProtClustDB:CLSK937927
BioCyc:PFLU220664:GIX8-4929-MONOMER Uniprot:Q4K714
Length = 465
Score = 124 (48.7 bits), Expect = 0.00021, P = 0.00021
Identities = 39/108 (36%), Positives = 54/108 (50%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+LVVDD+ +L L + V T AL +L + D+V+SD MP MDG
Sbjct: 5 LLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQED--IDLVISDWRMPGMDGP 62
Query: 96 KLLEHIGLEM-DLPVITDGRVSAV---MRGIRHGACDYLIKPIREEEL 139
+LL I LPVI S V ++ +R+GA DY+ KP +EL
Sbjct: 63 QLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDEL 110
>UNIPROTKB|Q4GZK7 [details] [associations]
symbol:rr4 "Type A response regulator 4" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000126
EMBL:AJ938073 Uniprot:Q4GZK7
Length = 232
Score = 90 (36.7 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 20/76 (26%), Positives = 46/76 (60%)
Query: 81 DVVLSDVHMPDMDGFKLLEHI-GLEM--DLPVI--TDGRVSA-VMRGIRHGACDYLIKPI 134
+++++D MP M G+ LL+ + G D+PV+ + V A + R + GA ++ +KP+
Sbjct: 75 NLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFFLKPV 134
Query: 135 REEELKNIWQHVVRKR 150
+ ++K + H+++++
Sbjct: 135 KLADMKKLKSHLLKRK 150
Score = 71 (30.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDIL 73
VL VDD + +++E +L+ Y VTT + AL++L
Sbjct: 12 VLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELL 49
>TIGR_CMR|BA_1955 [details] [associations]
symbol:BA_1955 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 HSSP:P08402 RefSeq:NP_844363.1
RefSeq:YP_018600.2 ProteinModelPortal:Q81RT3 DNASU:1085997
EnsemblBacteria:EBBACT00000011147 EnsemblBacteria:EBBACT00000016377
GeneID:1085997 GeneID:2817674 KEGG:ban:BA_1955 KEGG:bar:GBAA_1955
PATRIC:18781506 OMA:FLECEGF ProtClustDB:CLSK916430
BioCyc:BANT261594:GJ7F-1959-MONOMER Uniprot:Q81RT3
Length = 228
Score = 118 (46.6 bits), Expect = 0.00021, P = 0.00021
Identities = 35/108 (32%), Positives = 55/108 (50%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDMDG 94
+L+VDDD +R L + C T +A LD L++ + D+V+ D+ MP+MDG
Sbjct: 8 ILIVDDD-PHIRELVSVFLECEGFQTY--EAIDGLDALQKINQVKVDMVILDIMMPNMDG 64
Query: 95 FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEEL 139
F + + D+P++ G S ++G G DYL+KP EL
Sbjct: 65 FDVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIEL 112
>TIGR_CMR|BA_4736 [details] [associations]
symbol:BA_4736 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR009057
InterPro:IPR018060 InterPro:IPR018062 InterPro:IPR020449
Pfam:PF00072 Pfam:PF12833 PRINTS:PR00032 PROSITE:PS00041
PROSITE:PS01124 PROSITE:PS50110 SMART:SM00342 SMART:SM00448
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0043565 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P06628 RefSeq:NP_846945.1
RefSeq:YP_021384.1 RefSeq:YP_030643.1 ProteinModelPortal:Q81L92
DNASU:1083820 EnsemblBacteria:EBBACT00000009161
EnsemblBacteria:EBBACT00000017670 EnsemblBacteria:EBBACT00000022419
GeneID:1083820 GeneID:2815508 GeneID:2851678 KEGG:ban:BA_4736
KEGG:bar:GBAA_4736 KEGG:bat:BAS4396 HOGENOM:HOG000059795
OMA:RQVGTHE ProtClustDB:CLSK248699
BioCyc:BANT260799:GJAJ-4453-MONOMER
BioCyc:BANT261594:GJ7F-4603-MONOMER Uniprot:Q81L92
Length = 231
Score = 118 (46.6 bits), Expect = 0.00022, P = 0.00022
Identities = 49/170 (28%), Positives = 81/170 (47%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPD 91
+ VL+VDD+ L LE ++ R N T AA AL I K + L D+H+P
Sbjct: 1 MNVLLVDDEPLELEQLEFLIHRQFPNWTLHLALDAAEALSI--NEKFSIHLALLDIHLPG 58
Query: 92 MDGFKLLEHI---GLEMDLPVITDGR-VSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147
+ G +L E +D+ ++T + + IR G DY+ KPI E+EL ++ Q
Sbjct: 59 ISGLQLGEKFKNNNANLDIIIVTAYQNFDYAKQSIRLGVIDYITKPIIEKELIDVLQ--- 115
Query: 148 RKRWNENKEHENSGSLEET-DH-HKRGSDEIEYAS-SVNEGTEGTFKAQR 194
K ++ S +++T D H+ SD++ A + T T+ ++R
Sbjct: 116 -KYKGDSNIISYSRIIQDTLDIIHETFSDKLHLADIAAKVHTNPTYLSRR 164
>UNIPROTKB|Q9KRC3 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 118 (46.6 bits), Expect = 0.00023, P = 0.00023
Identities = 37/132 (28%), Positives = 63/132 (47%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
VLVV+DD+ L + Y VT A + L D+VL D+++P DG
Sbjct: 5 VLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALELND--IDLVLLDINLPGEDGL 62
Query: 96 KLLEHIGLEMDLPVI-TDGRVSAVMR--GIRHGACDYLIKPIREEEL----KNI-WQHVV 147
L + + ++ +I GR ++ + G+ GA DY+ KP+ EL KN+ W+ +
Sbjct: 63 LLTRELRSQSEIGIILVTGRTDSIDKIVGLEMGADDYVTKPVDLRELQVRVKNLLWRISL 122
Query: 148 RKRWNENKEHEN 159
+R +H++
Sbjct: 123 AQRERITDKHDD 134
>TIGR_CMR|VC_1719 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 118 (46.6 bits), Expect = 0.00023, P = 0.00023
Identities = 37/132 (28%), Positives = 63/132 (47%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
VLVV+DD+ L + Y VT A + L D+VL D+++P DG
Sbjct: 5 VLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALELND--IDLVLLDINLPGEDGL 62
Query: 96 KLLEHIGLEMDLPVI-TDGRVSAVMR--GIRHGACDYLIKPIREEEL----KNI-WQHVV 147
L + + ++ +I GR ++ + G+ GA DY+ KP+ EL KN+ W+ +
Sbjct: 63 LLTRELRSQSEIGIILVTGRTDSIDKIVGLEMGADDYVTKPVDLRELQVRVKNLLWRISL 122
Query: 148 RKRWNENKEHEN 159
+R +H++
Sbjct: 123 AQRERITDKHDD 134
>TIGR_CMR|SO_4633 [details] [associations]
symbol:SO_4633 "transcriptional regulatory protein OmpR"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07659
ProtClustDB:PRK09468 OMA:AANSEQM RefSeq:NP_720149.1 HSSP:P03025
ProteinModelPortal:Q8E8N0 SMR:Q8E8N0 GeneID:1172214
KEGG:son:SO_4633 PATRIC:23528927 Uniprot:Q8E8N0
Length = 241
Score = 118 (46.6 bits), Expect = 0.00025, P = 0.00025
Identities = 36/120 (30%), Positives = 62/120 (51%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++LVVDDD+ +LE+ L Y V + + A +D L ER+ F +++ D+ +P DG
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAE-QMDRLLEREN-FHLIVLDLMLPGEDG 64
Query: 95 FKLLEHIGLE-MDLPVIT-DGRVSAVMR--GIRHGACDYLIKPIREEELKNIWQHVVRKR 150
+ + + +P++ + V R G+ GA DYL KP EL + V+R++
Sbjct: 65 LSICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124
>TIGR_CMR|SO_0622 [details] [associations]
symbol:SO_0622 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034815 HSSP:Q9WYN0 RefSeq:NP_716255.1
ProteinModelPortal:Q8EJ51 GeneID:1168488 KEGG:son:SO_0622
PATRIC:23520932 OMA:PFHTQEL ProtClustDB:CLSK905847 Uniprot:Q8EJ51
Length = 224
Score = 117 (46.2 bits), Expect = 0.00026, P = 0.00026
Identities = 46/188 (24%), Positives = 93/188 (49%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+++L+V+D+ + LE+ L++ Y VT + A+ D L ++ +D V+ D+ +PD +
Sbjct: 1 MKLLLVEDNPMLVSELEKQLKQAGY-VTDITDKALEADYL-VKETQYDCVILDIGLPDGN 58
Query: 94 GFKLLE---HIGLEMDLPVITD-GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
G +LLE + G+ + ++T + + G GA DYL KP +EL Q ++ +
Sbjct: 59 GLELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHR 118
Query: 150 RW----NENKEHENSG-SLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDD 204
N NK+ G +L+E + +++ +++ F K++ +K +
Sbjct: 119 AHGRLNNPNKQLSYGGVTLDEAEQTVSVGEQLYELTAMEFRLLKIFLMSPKKLLSKAQLT 178
Query: 205 GEL-ESDD 211
+L + DD
Sbjct: 179 DKLYQFDD 186
>UNIPROTKB|Q74DM7 [details] [associations]
symbol:cheY34H-1 "Response receiver CheY associated with
MCPs of class 34H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P08402
RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7 GeneID:2688101
KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC ProtClustDB:CLSK828284
BioCyc:GSUL243231:GH27-1257-MONOMER Uniprot:Q74DM7
Length = 121
Score = 100 (40.3 bits), Expect = 0.00027, P = 0.00027
Identities = 29/119 (24%), Positives = 62/119 (52%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGC-FDVVLSDVHMPDMDG 94
++ VDD + +++ L++ Y+V +A D L + G D+V++D++MP++DG
Sbjct: 5 IMTVDDSASVRQMVSFTLKQNGYDVV---EAVDGKDALAKLAGTRVDMVITDLNMPNLDG 61
Query: 95 FKLLEHIGLEMDL---PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147
L++ + P++ T+ + S G GA +++KP + E+L + + V+
Sbjct: 62 IGLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKPFKPEQLVAVVKKVL 120
>TIGR_CMR|BA_5581 [details] [associations]
symbol:BA_5581 "stage 0 sporulation protein F"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016740 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K02490
ProtClustDB:CLSK873695 RefSeq:NP_847737.1 RefSeq:YP_022251.1
RefSeq:YP_031424.1 HSSP:P06628 ProteinModelPortal:Q81JW3 SMR:Q81JW3
DNASU:1085276 EnsemblBacteria:EBBACT00000010293
EnsemblBacteria:EBBACT00000016210 EnsemblBacteria:EBBACT00000023627
GeneID:1085276 GeneID:2814845 GeneID:2853145 KEGG:ban:BA_5581
KEGG:bar:GBAA_5581 KEGG:bat:BAS5185 OMA:EADGAMD
BioCyc:BANT260799:GJAJ-5260-MONOMER
BioCyc:BANT261594:GJ7F-5440-MONOMER Uniprot:Q81JW3
Length = 122
Score = 100 (40.3 bits), Expect = 0.00027, P = 0.00027
Identities = 27/110 (24%), Positives = 56/110 (50%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDD +L ++ ++ Y + ALDI+++ D+V+ D+ +P MDG
Sbjct: 4 KILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNP--DLVVLDMKIPGMDG 61
Query: 95 FKLLEHIG-LEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELK 140
++L+H+ ++ + VI G + + GA + KP +E++
Sbjct: 62 IEILKHVKEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIR 111
>TIGR_CMR|GSU_0789 [details] [associations]
symbol:GSU_0789 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_951846.1 ProteinModelPortal:Q74F20 GeneID:2685295
KEGG:gsu:GSU0789 PATRIC:22024339 OMA:HAVAARN
BioCyc:GSUL243231:GH27-807-MONOMER Uniprot:Q74F20
Length = 125
Score = 100 (40.3 bits), Expect = 0.00027, P = 0.00027
Identities = 34/115 (29%), Positives = 52/115 (45%)
Query: 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERK-GCFDVVLSDVHMPD 91
G VL+ DD+ LR L++M+ V T L + G ++L D+ +PD
Sbjct: 3 GGSVLICDDEEGMLRYLKKMIEAAGLRVETFGNGTSLLARIEGGDPGDASLLLQDMRLPD 62
Query: 92 MDGFKLLEHIG-LEMDLPVI--TDGRVSAVMRG-IRHGACDYLIKPIREEELKNI 142
DG ++L + L LPV+ T V+R GA D+L KP E + +
Sbjct: 63 ADGLEILHRVKELRPALPVVMMTAYACDEVVRAAFDGGASDFLPKPFTREAVLGV 117
>TIGR_CMR|GSU_1289 [details] [associations]
symbol:GSU_1289 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P08402 RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7
GeneID:2688101 KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC
ProtClustDB:CLSK828284 BioCyc:GSUL243231:GH27-1257-MONOMER
Uniprot:Q74DM7
Length = 121
Score = 100 (40.3 bits), Expect = 0.00027, P = 0.00027
Identities = 29/119 (24%), Positives = 62/119 (52%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGC-FDVVLSDVHMPDMDG 94
++ VDD + +++ L++ Y+V +A D L + G D+V++D++MP++DG
Sbjct: 5 IMTVDDSASVRQMVSFTLKQNGYDVV---EAVDGKDALAKLAGTRVDMVITDLNMPNLDG 61
Query: 95 FKLLEHIGLEMDL---PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147
L++ + P++ T+ + S G GA +++KP + E+L + + V+
Sbjct: 62 IGLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKPFKPEQLVAVVKKVL 120
>TIGR_CMR|GSU_2219 [details] [associations]
symbol:GSU_2219 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P08402
RefSeq:NP_953268.1 ProteinModelPortal:Q74AY0 GeneID:2685652
KEGG:gsu:GSU2219 PATRIC:22027293 OMA:VMLTAKK ProtClustDB:CLSK828762
BioCyc:GSUL243231:GH27-2166-MONOMER Uniprot:Q74AY0
Length = 123
Score = 100 (40.3 bits), Expect = 0.00027, P = 0.00027
Identities = 31/116 (26%), Positives = 57/116 (49%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+L+V+D+ + L++ +L Y V + ALD + D+++ D+ +P MDG
Sbjct: 5 RILIVEDEESLLKLESILLSSRGYAVAGVTDGKSALDYIAATPP--DLIILDIMLPGMDG 62
Query: 95 FKLLEHIGLEMD---LPVIT-DGRVSAVMR--GIRHGACDYLIKPIREEELKNIWQ 144
F++ + I + +PV+ + S R G+ GA Y+ KP + + I Q
Sbjct: 63 FEVCQMIKADPSTRHIPVVMLTAKKSTQDRDKGLEAGASAYVTKPFKSARIIEIIQ 118
>TIGR_CMR|SO_4003 [details] [associations]
symbol:SO_4003 "response regulator" species:211586
"Shewanella oneidensis MR-1" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 SMART:SM00471 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0008152 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0008081 Gene3D:1.10.3210.10 HSSP:Q9A5I4
HOGENOM:HOG000266481 KO:K07814 RefSeq:NP_719533.1
ProteinModelPortal:Q8EAA5 GeneID:1171631 KEGG:son:SO_4003
PATRIC:23527676 OMA:FVTAKTD ProtClustDB:CLSK577304 Uniprot:Q8EAA5
Length = 357
Score = 121 (47.7 bits), Expect = 0.00029, P = 0.00029
Identities = 37/106 (34%), Positives = 55/106 (51%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
VLVVDD ++IL +L Y++ + A AL L + D++L DV MP+MDGF
Sbjct: 10 VLVVDDSADNIQILHGLLSD-KYSIRAATSGAKAL-ALAAIEPMPDLILLDVMMPEMDGF 67
Query: 96 KL---LEHIGLEMDLPVI-TDGRVSAV--MRGIRHGACDYLIKPIR 135
+ L+H L +P+I + V G GA DY+ KP++
Sbjct: 68 QTCIRLKHNPLTRHIPIIFVTAKTDIVDERTGFELGAVDYISKPVK 113
>TIGR_CMR|CPS_0681 [details] [associations]
symbol:CPS_0681 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_267431.1 ProteinModelPortal:Q488T3
STRING:Q488T3 GeneID:3522148 KEGG:cps:CPS_0681 PATRIC:21464685
BioCyc:CPSY167879:GI48-768-MONOMER Uniprot:Q488T3
Length = 246
Score = 118 (46.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 32/110 (29%), Positives = 58/110 (52%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L+V+DDI+ + + L +NVT ++ + +D+++ K D+VL DV +P ++G
Sbjct: 4 ILLVEDDISLADWVSEYLTEQGFNVTHVARGDLVIDVIK--KNTTDIVLLDVMLPGLNGI 61
Query: 96 ---KLLEHIGLEMDLPVIT-DGRVSAV--MRGIRHGACDYLIKPIREEEL 139
+L+ +P+I R + G+ GA DY+IKP+R L
Sbjct: 62 EVCRLIRQHEQSKQVPIIMLTARADEFDEVIGLEAGADDYVIKPVRPRAL 111
Score = 39 (18.8 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 190 FKAQRKRISAKEEDDGELESDDPSTTKKPRVVW 222
+ Q +R +L +DDP +K + +W
Sbjct: 189 YDGQDRRFDVMLSTLRKLFNDDPQKPQKFKTIW 221
>TIGR_CMR|CHY_0092 [details] [associations]
symbol:CHY_0092 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_358964.1
ProteinModelPortal:Q3AFX0 STRING:Q3AFX0 GeneID:3728314
KEGG:chy:CHY_0092 PATRIC:21273381 OMA:KLANKEF
BioCyc:CHYD246194:GJCN-92-MONOMER Uniprot:Q3AFX0
Length = 234
Score = 117 (46.2 bits), Expect = 0.00030, P = 0.00030
Identities = 33/118 (27%), Positives = 57/118 (48%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
+VL+++DD + + L + V L E + +D++L D+ +P +DG
Sbjct: 3 KVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEE--YDLILLDLMLPGIDG 60
Query: 95 FKLLEHIGLEMDLPVI-TDGRVSAV--MRGIRHGACDYLIKPIREEEL-KNIWQHVVR 148
F++L + E D PV+ R + +RG+ GA DY+ KP EL + H+ R
Sbjct: 61 FEVLRKVRAEKDTPVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHIGR 118
>TIGR_CMR|GSU_1316 [details] [associations]
symbol:GSU_1316 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR003018
InterPro:IPR001789 Pfam:PF00072 Pfam:PF13185 PROSITE:PS50110
SMART:SM00065 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_952369.1
ProteinModelPortal:Q74DK0 DNASU:2685737 GeneID:2685737
KEGG:gsu:GSU1316 PATRIC:22025407 HOGENOM:HOG000276092 OMA:NMVLTDI
ProtClustDB:CLSK828294 BioCyc:GSUL243231:GH27-1295-MONOMER
Uniprot:Q74DK0
Length = 324
Score = 120 (47.3 bits), Expect = 0.00031, P = 0.00031
Identities = 37/143 (25%), Positives = 71/143 (49%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
++VLVVD+ + L Y VT+ + A+ + FD++++D+++P M
Sbjct: 7 IQVLVVDESAPSRAFIASTLENGGYIVTSVASGEEAVHEVNAAP--FDILVTDINLPGMS 64
Query: 94 GF---KLLEHIGLEMDLPVITDGRVS-AVMRGIRHGACDYLIKPIREEE-LKNIWQHVVR 148
G KLL+ ++++ ++T S ++ +R GA D++IKP+ + L NI V
Sbjct: 65 GLNLLKLLKDSFPDLEVVIVTSNASSFTAIKALRLGAYDFIIKPVDDPAILTNIVGRAVE 124
Query: 149 KR--WNENKEHENSGSLEETDHH 169
K+ EN+ + L+ + H
Sbjct: 125 KQSLTRENRRLMDDMKLKNRELH 147
>TIGR_CMR|CJE_1168 [details] [associations]
symbol:CJE_1168 "sigma-54 dependent DNA-binding response
regulator" species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
PROSITE:PS00675 PROSITE:PS00676 KO:K02481 RefSeq:YP_179159.1
ProteinModelPortal:Q5HU76 STRING:Q5HU76 GeneID:3231677
KEGG:cjr:CJE1168 PATRIC:20044129 OMA:KYQIKDK ProtClustDB:CLSK872418
BioCyc:CJEJ195099:GJC0-1195-MONOMER Uniprot:Q5HU76
Length = 433
Score = 122 (48.0 bits), Expect = 0.00031, P = 0.00031
Identities = 33/138 (23%), Positives = 69/138 (50%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
+ +++V+DDI + LE L +N+ + A AL + E D++++D++MP +
Sbjct: 1 MNLVIVEDDINMRKSLEIALAEYEEFNIKSYKSATEALKKIDENT---DLIITDINMPGI 57
Query: 93 DGFKLLEHIGLEMDLPVIT-DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQH--VVRK 149
DG + ++ + D ++T + +S + +R G D+L KP + L + ++R+
Sbjct: 58 DGIEFVKACENKYDFIIMTGNATLSRAIEAVRLGVKDFLTKPFDVDTLVEAIKRAKIIRE 117
Query: 150 RWNENKEHENSGSLEETD 167
+ + K +N E D
Sbjct: 118 KTADKKSKKNEKKEENKD 135
>TIGR_CMR|CHY_1367 [details] [associations]
symbol:CHY_1367 "C4-dicarboxylate response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR005471
InterPro:IPR024187 Pfam:PF00072 Pfam:PF09339 PIRSF:PIRSF006171
PROSITE:PS50110 SMART:SM00448 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
eggNOG:COG4565 HOGENOM:HOG000034816 RefSeq:YP_360200.1
ProteinModelPortal:Q3ACD4 STRING:Q3ACD4 GeneID:3728031
KEGG:chy:CHY_1367 PATRIC:21275867 KO:K11692 OMA:YMPKKDG
BioCyc:CHYD246194:GJCN-1366-MONOMER Uniprot:Q3ACD4
Length = 220
Score = 116 (45.9 bits), Expect = 0.00032, P = 0.00032
Identities = 32/130 (24%), Positives = 66/130 (50%)
Query: 34 LRVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD 91
++ ++V+DD L I + ++ + + L+ L+ ++++ D+++PD
Sbjct: 2 IKTVIVEDDPMVLEINKNFIKEVEGFEIIAALKSGSELLNFLKNHSP--ELLILDIYLPD 59
Query: 92 MDGFKLLEHI---GLEMDLPVITDGRVSAVMRGI-RHGACDYLIKPIREEEL-------K 140
+DG LL+ I + +D+ IT + ++ + R+G DY+IKP ++E L K
Sbjct: 60 IDGLTLLKEIRRQNISVDVLAITAAQQGEIVAELLRYGVVDYIIKPFKKERLVKALLTYK 119
Query: 141 NIWQHVVRKR 150
N + + RKR
Sbjct: 120 NKYLKIGRKR 129
>TIGR_CMR|CPS_1260 [details] [associations]
symbol:CPS_1260 "putative nitrate/nitrite DNA-binding
response regulator" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR000792 InterPro:IPR001789 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038 PROSITE:PS00622
PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421 SMART:SM00448
GO:GO:0035556 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF46894 eggNOG:COG2197 HOGENOM:HOG000034813
KO:K07684 RefSeq:YP_268003.1 ProteinModelPortal:Q486L2
STRING:Q486L2 GeneID:3521261 KEGG:cps:CPS_1260 PATRIC:21465757
OMA:THKRNIK ProtClustDB:CLSK938262
BioCyc:CPSY167879:GI48-1341-MONOMER Uniprot:Q486L2
Length = 206
Score = 115 (45.5 bits), Expect = 0.00033, P = 0.00033
Identities = 35/113 (30%), Positives = 59/113 (52%)
Query: 34 LRVLVVDDDITCLRILEQMLRR--CLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD 91
++VL+VDD L+ L C+ V AL++++ FD+VL D++MP+
Sbjct: 2 IKVLLVDDHPLFREGLKHRLSLDDCIEVVGEAENGKQALELIKSLD--FDIVLMDINMPE 59
Query: 92 MDGFKLLEHIG-LEMDLPVIT----DGRVSAVMRGIRHGACDYLIKPIREEEL 139
MDG +LE I ++D V+ D + ++ +RHGA Y++K + EL
Sbjct: 60 MDGMYVLELIKEQDLDCKVLMLSMHDNK-EYILGAMRHGADGYILKDVPGAEL 111
>TAIR|locus:2028346 [details] [associations]
symbol:KAN2 "AT1G32240" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048440 "carpel development" evidence=IGI] [GO:0048481 "ovule
development" evidence=IGI] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=IGI] [GO:0009737 "response to
abscisic acid stimulus" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0010162 "seed dormancy
process" evidence=RCA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0030154 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
GO:GO:0048481 EMBL:AC084110 HSSP:O49397 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0009944
HOGENOM:HOG000241649 EMBL:AY048689 EMBL:BT029211 EMBL:AB493491
IPI:IPI00539948 RefSeq:NP_564392.1 UniGene:At.25340
ProteinModelPortal:Q9C616 SMR:Q9C616 STRING:Q9C616
EnsemblPlants:AT1G32240.1 GeneID:840116 KEGG:ath:AT1G32240
TAIR:At1g32240 eggNOG:NOG325874 InParanoid:Q9C616 OMA:SDVYENG
PhylomeDB:Q9C616 ProtClustDB:CLSN2715231 Genevestigator:Q9C616
Uniprot:Q9C616
Length = 388
Score = 121 (47.7 bits), Expect = 0.00033, P = 0.00033
Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 216 KKPRVVWSVELHQQFVSAVNQLG-IDKAVPKRILELMNVPGLTRENVASHLQ 266
+ PR+ W+ LH +FV AV LG ++A PK +LELM+V LT +V SHLQ
Sbjct: 212 RAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 263
>TIGR_CMR|CPS_2473 [details] [associations]
symbol:CPS_2473 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_269189.1 ProteinModelPortal:Q481T0
STRING:Q481T0 GeneID:3519581 KEGG:cps:CPS_2473 PATRIC:21468015
ProtClustDB:CLSK869033 BioCyc:CPSY167879:GI48-2536-MONOMER
Uniprot:Q481T0
Length = 242
Score = 117 (46.2 bits), Expect = 0.00033, P = 0.00033
Identities = 32/118 (27%), Positives = 59/118 (50%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDDD ++L Y+V+ + A A ++L G D++L D+ MP DG
Sbjct: 6 KILIVDDDELTRQVLSSYFENEGYDVSCATTAEEAEELLI--LGTVDLILLDIRMPGKDG 63
Query: 95 FKLLEHIGLEMDLPVI-TDGRVSAVMR--GIRHGACDYLIKPIREEELKNIWQHVVRK 149
L + + ++ +I G V R G+ GA +Y+ KP E+ ++++R+
Sbjct: 64 LTLTRELRVNNEVGIILVTGSQDEVDRLIGLECGADEYVTKPFNPREILARAKNLIRR 121
>UNIPROTKB|P06628 [details] [associations]
symbol:spo0F "Sporulation initiation phosphotransferase F"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0005737
GO:GO:0006355 GO:GO:0035556 GO:GO:0046872 GO:GO:0030435
GO:GO:0016301 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:Z49782 EMBL:X03497 EMBL:M11081
EMBL:M22039 PIR:A24737 RefSeq:NP_391594.1 PDB:1F51 PDB:1FSP
PDB:1NAT PDB:1PEY PDB:1PUX PDB:1SRR PDB:2FSP PDB:2FTK PDB:2JVI
PDB:2JVJ PDB:2JVK PDB:3Q15 PDBsum:1F51 PDBsum:1FSP PDBsum:1NAT
PDBsum:1PEY PDBsum:1PUX PDBsum:1SRR PDBsum:2FSP PDBsum:2FTK
PDBsum:2JVI PDBsum:2JVJ PDBsum:2JVK PDBsum:3Q15
ProteinModelPortal:P06628 SMR:P06628 DIP:DIP-58965N IntAct:P06628
EnsemblBacteria:EBBACT00000000330 GeneID:937041 KEGG:bsu:BSU37130
PATRIC:18979462 GenoList:BSU37130 KO:K02490 OMA:IRVIIMT
ProtClustDB:CLSK873695 BioCyc:BSUB:BSU37130-MONOMER
BindingDB:P06628 ChEMBL:CHEMBL3857 EvolutionaryTrace:P06628
Uniprot:P06628
Length = 124
Score = 99 (39.9 bits), Expect = 0.00034, P = 0.00034
Identities = 27/111 (24%), Positives = 56/111 (50%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDD +L ++ + Y + ALDI+ + + D+VL D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 95 FKLLEHIG-LEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKN 141
++L+ + ++ ++ VI G + + GA + KP +E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>TIGR_CMR|BA_1660 [details] [associations]
symbol:BA_1660 "chemotaxis response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:PFQAPKV RefSeq:NP_844107.1 RefSeq:YP_018295.1
RefSeq:YP_027808.1 HSSP:Q56312 ProteinModelPortal:Q81SI8 SMR:Q81SI8
DNASU:1083740 EnsemblBacteria:EBBACT00000009828
EnsemblBacteria:EBBACT00000015597 EnsemblBacteria:EBBACT00000020958
GeneID:1083740 GeneID:2817294 GeneID:2851539 KEGG:ban:BA_1660
KEGG:bar:GBAA_1660 KEGG:bat:BAS1541 ProtClustDB:CLSK916318
BioCyc:BANT260799:GJAJ-1613-MONOMER
BioCyc:BANT261594:GJ7F-1681-MONOMER Uniprot:Q81SI8
Length = 122
Score = 99 (39.9 bits), Expect = 0.00034, P = 0.00034
Identities = 29/111 (26%), Positives = 60/111 (54%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCF-DVVLSDVHMPDMD 93
++LVVDD + +++ +L+ +A ++ +++ K D+V D+ MP+MD
Sbjct: 4 KILVVDDAMFMRTMIKNLLKSNS-EFEVIGEAENGVEAIQKYKELQPDIVTLDITMPEMD 62
Query: 94 GFKLLEHIGLEMDLP---VITD--GRVSAVMRGIRHGACDYLIKPIREEEL 139
G + L+ I +++D VI G+ V+ I+ GA D+++KP + + +
Sbjct: 63 GLEALKEI-IKIDASAKVVICSAMGQQGMVLDAIKGGAKDFIVKPFQADRV 112
>TIGR_CMR|SPO_A0237 [details] [associations]
symbol:SPO_A0237 "C4-dicarboxylate transport
transcriptional regulatory protein DctD" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR000641 InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR00819 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 EMBL:CP000032
GenomeReviews:CP000032_GR RefSeq:YP_165066.1
ProteinModelPortal:Q5LKZ2 GeneID:3196880 KEGG:sil:SPOA0237
PATRIC:23381812 Uniprot:Q5LKZ2
Length = 446
Score = 120 (47.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 37/144 (25%), Positives = 65/144 (45%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+LV+DDD + L +L + V ++A + L + DV+LSD+ MP M G
Sbjct: 9 ILVIDDDKSMRLSLVDLLEAAGWQVEAIARATLVAAKLDDNPP--DVILSDIRMPGMTGL 66
Query: 96 KLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 152
+LL + P++ G + ++ +R GA ++ KP L +I H
Sbjct: 67 ELLSSLDHASAPPLVLISAHGDIPMAVQAMRDGAYSFVEKPYEPRRLLSILTHAAE---- 122
Query: 153 ENKEHENSGSLEETDHHKRGSDEI 176
+N+ +++ L+E G D I
Sbjct: 123 QNRMQQDNSRLKERLIRLSGLDRI 146
Score = 46 (21.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 249 ELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLG 304
+L +VPG RE VA +E+ + + + R++ ++ GI E VKLG
Sbjct: 386 QLDDVPGTLREAVAVFERELISKAIQAHEGRMDAAAEALGIGRRTLN--EKIVKLG 439
>UNIPROTKB|Q9KNI9 [details] [associations]
symbol:VC_2749 "Nitrogen regulation protein NR(I)"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006808 "regulation of nitrogen utilization"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
InterPro:IPR010114 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0009399 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006808
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K07712
OMA:ARGQSNL GO:GO:0050906 TIGRFAMs:TIGR01818 HSSP:P41789 PIR:D82038
RefSeq:NP_232375.1 ProteinModelPortal:Q9KNI9 SMR:Q9KNI9
DNASU:2614912 GeneID:2614912 KEGG:vch:VC2749 PATRIC:20084518
ProtClustDB:CLSK874911 Uniprot:Q9KNI9
Length = 468
Score = 122 (48.0 bits), Expect = 0.00035, P = 0.00035
Identities = 40/131 (30%), Positives = 61/131 (46%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQA-AVALDILRERKGCFDVVLSDVHMPDMDG 94
V VVDDD + ++E+ L T + A +V L + RE DV++SD+ MP MDG
Sbjct: 8 VWVVDDDSSIRWVMEKTLSSAHIKCETFADAESVLLALERETP---DVLVSDIRMPGMDG 64
Query: 95 FKLLEHIGLEM-DLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150
LL + +LPVI + A + + GA +YL KP +E + + +
Sbjct: 65 IALLNQVHQRTPELPVIIMTAHSDLDAAVNAYQQGAFEYLPKPFDVDETLTLVERAIAHG 124
Query: 151 WNENK-EHENS 160
+ K H S
Sbjct: 125 QEQRKTSHRPS 135
>TIGR_CMR|VC_2749 [details] [associations]
symbol:VC_2749 "nitrogen regulation protein NR(I)"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 InterPro:IPR010114
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0009399 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006808 InterPro:IPR025662
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00676 PROSITE:PS00688 KO:K07712 OMA:ARGQSNL GO:GO:0050906
TIGRFAMs:TIGR01818 HSSP:P41789 PIR:D82038 RefSeq:NP_232375.1
ProteinModelPortal:Q9KNI9 SMR:Q9KNI9 DNASU:2614912 GeneID:2614912
KEGG:vch:VC2749 PATRIC:20084518 ProtClustDB:CLSK874911
Uniprot:Q9KNI9
Length = 468
Score = 122 (48.0 bits), Expect = 0.00035, P = 0.00035
Identities = 40/131 (30%), Positives = 61/131 (46%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQA-AVALDILRERKGCFDVVLSDVHMPDMDG 94
V VVDDD + ++E+ L T + A +V L + RE DV++SD+ MP MDG
Sbjct: 8 VWVVDDDSSIRWVMEKTLSSAHIKCETFADAESVLLALERETP---DVLVSDIRMPGMDG 64
Query: 95 FKLLEHIGLEM-DLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150
LL + +LPVI + A + + GA +YL KP +E + + +
Sbjct: 65 IALLNQVHQRTPELPVIIMTAHSDLDAAVNAYQQGAFEYLPKPFDVDETLTLVERAIAHG 124
Query: 151 WNENK-EHENS 160
+ K H S
Sbjct: 125 QEQRKTSHRPS 135
>TAIR|locus:2040282 [details] [associations]
symbol:RR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=RCA] [GO:0048831 "regulation of shoot system
development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009536
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
EMBL:AB010917 EMBL:AC005662 EMBL:AY074643 IPI:IPI00535987
PIR:T48853 RefSeq:NP_181663.1 UniGene:At.244
ProteinModelPortal:O80365 SMR:O80365 IntAct:O80365 STRING:O80365
EnsemblPlants:AT2G41310.1 GeneID:818730 KEGG:ath:AT2G41310
GeneFarm:4125 TAIR:At2g41310 InParanoid:O80365 OMA:METESKF
PhylomeDB:O80365 ProtClustDB:CLSN2683767 Genevestigator:O80365
GermOnline:AT2G41310 Uniprot:O80365
Length = 225
Score = 97 (39.2 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 30/110 (27%), Positives = 57/110 (51%)
Query: 81 DVVLSDVHMPDMDGFKLLEHI---GLEMDLPVI--TDGRVSA-VMRGIRHGACDYLIKPI 134
+++++D MP M G+ LL+ + +PV+ + V A + R + GA ++ +KP+
Sbjct: 73 NLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEEFFLKPV 132
Query: 135 REEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNE 184
+ +L + H+++ + KE E ++EE K +E E SSV E
Sbjct: 133 KLADLTKLKPHMMKTKLK--KESEKPVAIEEIVVSKPEIEEEEEESSVIE 180
Score = 60 (26.2 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDIL 73
VL VDD + +++E++L++ VTT + AL+ L
Sbjct: 11 VLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFL 48
>TIGR_CMR|SO_3196 [details] [associations]
symbol:SO_3196 "response regulator" species:211586
"Shewanella oneidensis MR-1" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P10958 RefSeq:NP_718751.1
ProteinModelPortal:Q8ECE7 GeneID:1170890 KEGG:son:SO_3196
PATRIC:23526076 HOGENOM:HOG000289704 OMA:GLLDWGK
ProtClustDB:CLSK907046 Uniprot:Q8ECE7
Length = 367
Score = 120 (47.3 bits), Expect = 0.00039, P = 0.00039
Identities = 33/105 (31%), Positives = 56/105 (53%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L V+DD +I+ L V L ++++ FD++L+D+ MP + G
Sbjct: 8 ILWVEDDPVFRQIVATFLSGRGAQVVQAGDGEQGLIHFKQQR--FDIILADLSMPKLGGL 65
Query: 96 KLLEHIG-LEMDLP--VITDGRVSA-VMRGIRHGACDYLIKPIRE 136
+L+ + LE +P VI+ V A V+ +R GACDYL+KP+ +
Sbjct: 66 DMLKEMSKLEPLVPSIVISGNNVMADVVEALRIGACDYLVKPVAD 110
>TIGR_CMR|CHY_2567 [details] [associations]
symbol:CHY_2567 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483 RefSeq:YP_361360.1
ProteinModelPortal:Q3A924 SMR:Q3A924 STRING:Q3A924 GeneID:3728531
KEGG:chy:CHY_2567 PATRIC:21278183
BioCyc:CHYD246194:GJCN-2566-MONOMER Uniprot:Q3A924
Length = 236
Score = 116 (45.9 bits), Expect = 0.00040, P = 0.00040
Identities = 35/126 (27%), Positives = 63/126 (50%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDD+ + +++ L + Y V T AL+ + K D+++ D MP+M G
Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKP--DLIVLDWMMPEMSG 61
Query: 95 FKLLEHIGLEMDLPVIT-DGRVSAVMR--GIRHGACDYLIKP--IRE--EELKNIWQHVV 147
++L I + +P+I + V + G G DY++KP +RE +K I + +
Sbjct: 62 IEVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLE 121
Query: 148 RKRWNE 153
K NE
Sbjct: 122 AKTINE 127
>UNIPROTKB|Q9KT18 [details] [associations]
symbol:VC1087 "Response regulator" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P13632 OMA:GMQLADD
EMBL:AE004189 PIR:G82244 RefSeq:NP_230732.1
ProteinModelPortal:Q9KT18 DNASU:2614357 GeneID:2614357
KEGG:vch:VC1087 PATRIC:20081270 ProtClustDB:CLSK793948
Uniprot:Q9KT18
Length = 447
Score = 121 (47.7 bits), Expect = 0.00042, P = 0.00042
Identities = 37/114 (32%), Positives = 60/114 (52%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
L VL++DD+ L+ L ++LR YNV T A AL+ L+E +++SD+ MP+MD
Sbjct: 11 LNVLLLDDENDILKALNRVLRMD-YNVVTFDNGADALEYLQENP--IHIIISDMRMPEMD 67
Query: 94 GFKLLEHIG-LEMD-LPVITDGR--VSAVMRGIRHGACD-YLIKPIREEELKNI 142
G L ++ D + ++ G + + +R + G Y+ KP E LK I
Sbjct: 68 GADFLAKAREMQPDTVRLLLTGYADIQSTVRAVNAGGIHTYISKPWDNENLKLI 121
>TIGR_CMR|VC_1087 [details] [associations]
symbol:VC_1087 "response regulator" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P13632 OMA:GMQLADD
EMBL:AE004189 PIR:G82244 RefSeq:NP_230732.1
ProteinModelPortal:Q9KT18 DNASU:2614357 GeneID:2614357
KEGG:vch:VC1087 PATRIC:20081270 ProtClustDB:CLSK793948
Uniprot:Q9KT18
Length = 447
Score = 121 (47.7 bits), Expect = 0.00042, P = 0.00042
Identities = 37/114 (32%), Positives = 60/114 (52%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
L VL++DD+ L+ L ++LR YNV T A AL+ L+E +++SD+ MP+MD
Sbjct: 11 LNVLLLDDENDILKALNRVLRMD-YNVVTFDNGADALEYLQENP--IHIIISDMRMPEMD 67
Query: 94 GFKLLEHIG-LEMD-LPVITDGR--VSAVMRGIRHGACD-YLIKPIREEELKNI 142
G L ++ D + ++ G + + +R + G Y+ KP E LK I
Sbjct: 68 GADFLAKAREMQPDTVRLLLTGYADIQSTVRAVNAGGIHTYISKPWDNENLKLI 121
>TIGR_CMR|GSU_2534 [details] [associations]
symbol:GSU_2534 "sensory box/response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR000014 InterPro:IPR001054 InterPro:IPR001789
Pfam:PF00072 Pfam:PF13188 PROSITE:PS50110 SMART:SM00091
SMART:SM00448 InterPro:IPR001610 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0016849
GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000167205 RefSeq:NP_953580.1 ProteinModelPortal:Q74A56
GeneID:2687798 KEGG:gsu:GSU2534 PATRIC:22027917 OMA:FESVIDW
ProtClustDB:CLSK828874 BioCyc:GSUL243231:GH27-2510-MONOMER
Uniprot:Q74A56
Length = 452
Score = 121 (47.7 bits), Expect = 0.00043, P = 0.00043
Identities = 28/105 (26%), Positives = 55/105 (52%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+R+L ++D+ R+L++ L R Y V + A L +L +D++L+D MP
Sbjct: 7 IRILYMEDNPALARLLQKSLLRKGYQVDVVADGAAGLTVLEGTS--YDLILADYDMPVCG 64
Query: 94 GFKLLEHIGLE-MDLPVIT---DGRVSAVMRGIRHGACDYLIKPI 134
G +++ + +D+PVI +G + ++ GA DY++K +
Sbjct: 65 GIEVIATLAARGVDIPVIMVTGNGSEKVAVEALKQGAADYVVKDL 109
>TIGR_CMR|SO_0860 [details] [associations]
symbol:SO_0860 "response regulator" species:211586
"Shewanella oneidensis MR-1" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 OMA:CELIYNA KO:K07814
HSSP:P06628 RefSeq:NP_716491.2 ProteinModelPortal:Q8EIH9
GeneID:1168707 KEGG:son:SO_0860 PATRIC:23521381
ProtClustDB:CLSK905977 Uniprot:Q8EIH9
Length = 338
Score = 119 (46.9 bits), Expect = 0.00043, P = 0.00043
Identities = 47/141 (33%), Positives = 68/141 (48%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+LVVDD + IL +L Y V AL ++ K D++L DV MP M+G+
Sbjct: 6 ILVVDDTPENIDILVGILGED-YKVKVAIDGPRALALVT--KTLPDLILLDVMMPGMNGY 62
Query: 96 ---KLLEHIGLEMDLPVITDGRVSAVM---RGIRHGACDYLIKPIREEELK-NIWQHVV- 147
KLL+ L +PVI +S V +G GA DY+ KP+ +K + H+
Sbjct: 63 EVCKLLKQEPLTCHIPVIFVTALSEVADEAQGFALGAVDYITKPVSAPVVKARVKTHLAL 122
Query: 148 --RKRWNENKEHENSGSLEET 166
+KR E + E + LEET
Sbjct: 123 YDQKRLLEQQVKERTQELEET 143
>UNIPROTKB|Q1CXR3 [details] [associations]
symbol:difD "Fibril biogenesis regulator DifD"
species:246197 "Myxococcus xanthus DK 1622" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_634810.1
ProteinModelPortal:Q1CXR3 SMR:Q1CXR3 IntAct:Q1CXR3 STRING:Q1CXR3
GeneID:4104566 KEGG:mxa:MXAN_6693 PATRIC:22655877 OMA:PFQAPKV
ProtClustDB:CLSK947176 BioCyc:MXAN246197:GIWU-6635-MONOMER
Uniprot:Q1CXR3
Length = 122
Score = 98 (39.6 bits), Expect = 0.00044, P = 0.00044
Identities = 33/119 (27%), Positives = 57/119 (47%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCF-DVVLSDVHMPDMD 93
RVLVVDD I +++ + + V +AA L+ + + K D+ D+ MP
Sbjct: 4 RVLVVDDAIFMRNMIKDIFASGGFEVV--GEAANGLEAVEKYKELKPDLTTMDIVMPFKS 61
Query: 94 GFKLLEHIGLEMDLPVITD-----GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147
G + I ++ D + G+ S VM I GA D+++KP R E++ + + V+
Sbjct: 62 GIEATREI-IKADSSAVVIMCSALGQESLVMEAIEAGASDFIVKPFRAEDVLAVVKKVL 119
>UNIPROTKB|Q8EEQ6 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:KLANYKF
HSSP:P06143 RefSeq:NP_717910.1 ProteinModelPortal:Q8EEQ6
GeneID:1170042 KEGG:son:SO_2318 PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 98 (39.6 bits), Expect = 0.00044, P = 0.00044
Identities = 31/111 (27%), Positives = 52/111 (46%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++LVVDD + ++ LR Y V AL L K ++++SDV+MP+MDG
Sbjct: 3 KILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKLNGDK--INLIISDVNMPNMDG 60
Query: 95 FKLLEHIGLEMDL---PVI---TDGRVSAVMRGIRHGACDYLIKPIREEEL 139
L+ + PVI T+ + G GA +++KP + ++
Sbjct: 61 ISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKPFQPPQM 111
>TIGR_CMR|SO_2318 [details] [associations]
symbol:SO_2318 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:KLANYKF HSSP:P06143 RefSeq:NP_717910.1
ProteinModelPortal:Q8EEQ6 GeneID:1170042 KEGG:son:SO_2318
PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 98 (39.6 bits), Expect = 0.00044, P = 0.00044
Identities = 31/111 (27%), Positives = 52/111 (46%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++LVVDD + ++ LR Y V AL L K ++++SDV+MP+MDG
Sbjct: 3 KILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKLNGDK--INLIISDVNMPNMDG 60
Query: 95 FKLLEHIGLEMDL---PVI---TDGRVSAVMRGIRHGACDYLIKPIREEEL 139
L+ + PVI T+ + G GA +++KP + ++
Sbjct: 61 ISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKPFQPPQM 111
>TAIR|locus:2171427 [details] [associations]
symbol:KAN "KANADI" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;ISS;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009887 "organ morphogenesis" evidence=IMP]
[GO:0009956 "radial pattern formation" evidence=IMP] [GO:0010051
"xylem and phloem pattern formation" evidence=IMP] [GO:0010158
"abaxial cell fate specification" evidence=IMP] [GO:0048440 "carpel
development" evidence=IGI] [GO:0048481 "ovule development"
evidence=IGI] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=IGI] [GO:0009943 "adaxial/abaxial
axis specification" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
EMBL:AB005242 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887 PROSITE:PS51293
GO:GO:0010051 GO:GO:0048481 HSSP:O49397 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0010158 GO:GO:0009944
GO:GO:0009956 EMBL:AY030192 EMBL:AY037864 EMBL:AY048688
EMBL:BT026436 IPI:IPI00535955 RefSeq:NP_568334.1 UniGene:At.6466
UniGene:At.66763 ProteinModelPortal:Q93WJ9 SMR:Q93WJ9 IntAct:Q93WJ9
STRING:Q93WJ9 PRIDE:Q93WJ9 EnsemblPlants:AT5G16560.1 GeneID:831518
KEGG:ath:AT5G16560 TAIR:At5g16560 eggNOG:NOG330873
HOGENOM:HOG000241649 InParanoid:Q93WJ9 OMA:GINGNEV PhylomeDB:Q93WJ9
ProtClustDB:CLSN2917650 Genevestigator:Q93WJ9 Uniprot:Q93WJ9
Length = 403
Score = 120 (47.3 bits), Expect = 0.00046, P = 0.00046
Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 216 KKPRVVWSVELHQQFVSAVNQLG-IDKAVPKRILELMNVPGLTRENVASHLQ 266
+ PR+ W+ LH +FV AV LG ++A PK +LELM+V LT +V SHLQ
Sbjct: 218 RAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 269
>UNIPROTKB|Q11156 [details] [associations]
symbol:regX3 "Sensory transduction protein regX3"
species:1773 "Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0009405 "pathogenesis"
evidence=IDA] [GO:0019217 "regulation of fatty acid metabolic
process" evidence=IDA] [GO:0019220 "regulation of phosphate
metabolic process" evidence=IDA] [GO:0080134 "regulation of
response to stress" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0009405
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0019217 GO:GO:0006351
EMBL:BX842573 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 SUPFAM:SSF46894
GO:GO:0080134 GO:GO:0019220 EMBL:Y13628 PIR:F70744
RefSeq:NP_215005.1 RefSeq:NP_334919.1 RefSeq:YP_006513821.1
PDB:2OQR PDBsum:2OQR ProteinModelPortal:Q11156 SMR:Q11156
PRIDE:Q11156 EnsemblBacteria:EBMYCT00000001447
EnsemblBacteria:EBMYCT00000072066 GeneID:13318362 GeneID:887195
GeneID:923874 KEGG:mtc:MT0510 KEGG:mtu:Rv0491 KEGG:mtv:RVBD_0491
PATRIC:18122830 TubercuList:Rv0491 KO:K07776 OMA:DVDSHTV
ProtClustDB:CLSK790554 EvolutionaryTrace:Q11156 Uniprot:Q11156
Length = 227
Score = 115 (45.5 bits), Expect = 0.00047, P = 0.00047
Identities = 39/133 (29%), Positives = 66/133 (49%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
VL+V+D+ + L +LR+ + T + AL +R G D+VL D+ +P M G
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEF-DRAGA-DIVLLDLMLPGMSGT 61
Query: 96 KLLEHIGLEMDLPVIT----DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151
+ + + +PVI D + V+ G+ GA DY+ KP EL + V+R+
Sbjct: 62 DVCKQLRARSSVPVIMVTARDSEIDKVV-GLELGADDYVTKPYSARELIARIRAVLRRGG 120
Query: 152 NENKEHENSGSLE 164
+++ E + G LE
Sbjct: 121 DDDSEMSD-GVLE 132
>TIGR_CMR|SO_4647 [details] [associations]
symbol:SO_4647 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:P08402
KO:K07660 ProtClustDB:CLSK907750 RefSeq:NP_720163.1
ProteinModelPortal:Q8E8L6 GeneID:1172229 KEGG:son:SO_4647
PATRIC:23528955 OMA:FEYFMLH Uniprot:Q8E8L6
Length = 231
Score = 115 (45.5 bits), Expect = 0.00049, P = 0.00049
Identities = 37/120 (30%), Positives = 57/120 (47%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+R+L+V+DD+ L+Q L Y++ S L E +D + DV +P +D
Sbjct: 1 MRLLLVEDDVALQTNLKQHLLDAHYSIDVASDGEEGLFQAVEYN--YDAAIIDVGLPKLD 58
Query: 94 GFKLLEHIGL-EMDLPV-ITDGRVS--AVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
G L+ I E P+ I R S + G+ GA DYL KP EEL + ++R+
Sbjct: 59 GISLIRRIRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR 118
>UNIPROTKB|Q4GZK2 [details] [associations]
symbol:rr9 "Type A response regulator 9" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009735
GO:GO:0006355 GO:GO:0035556 GO:GO:0007623 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
EMBL:CM000136 EMBL:AJ938078 STRING:Q4GZK2 Uniprot:Q4GZK2
Length = 201
Score = 113 (44.8 bits), Expect = 0.00051, P = 0.00051
Identities = 28/108 (25%), Positives = 58/108 (53%)
Query: 81 DVVLSDVHMPDMDGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPI 134
+++++D MP M G+ LL+ I D+PV+ +D S + R + GA ++ +KP+
Sbjct: 70 NLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFLKPV 129
Query: 135 REEELKNIWQHVVRKRWNENKEHE-NSGSLEETDHHKRGSDEIEYASS 181
R ++ + H+++ R E+ + E N S E+++ + E +S+
Sbjct: 130 RLSDMSKLKPHILKSRCKEHYQQEQNLQSNSESNNSSNPTSENSSSST 177
>TIGR_CMR|SPO_0132 [details] [associations]
symbol:SPO_0132 "sensor histidine kinase/response
regulator" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0005622 GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 KO:K00936 RefSeq:YP_165404.1
ProteinModelPortal:Q5LWT5 GeneID:3196450 KEGG:sil:SPO0132
PATRIC:23373509 HOGENOM:HOG000250541 OMA:RRLWHSI
ProtClustDB:CLSK933165 Uniprot:Q5LWT5
Length = 739
Score = 123 (48.4 bits), Expect = 0.00052, P = 0.00052
Identities = 36/91 (39%), Positives = 52/91 (57%)
Query: 22 ADVAVPDQFPAGLR-VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCF 80
A +P+ P L+ VL+VDD ILE+ L + VT C+ A AL+ + + C
Sbjct: 448 AQPVLPN-LPGRLQHVLIVDDLAVNRAILEKQLAQLGVRVTCCASGAQALEKMSD---CV 503
Query: 81 DVVLSDVHMPDMDGFKLLEHI-GLEM-DLPV 109
D+VLSD +MP+MDG +L E + G DLP+
Sbjct: 504 DLVLSDHNMPEMDGLELAEALRGAGWSDLPI 534
>ASPGD|ASPL0000043398 [details] [associations]
symbol:AN9048 species:162425 "Emericella nidulans"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0016310 "phosphorylation" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR003018 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 SMART:SM00065 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 GO:GO:0035556 EMBL:BN001307
GO:GO:0005622 GO:GO:0023014 EMBL:AACD01000168 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 RefSeq:XP_682317.1
ProteinModelPortal:Q5ARN2 EnsemblFungi:CADANIAT00007805
GeneID:2868194 KEGG:ani:AN9048.2 HOGENOM:HOG000178140 OMA:EVPIYSP
OrthoDB:EOG415KNG Uniprot:Q5ARN2
Length = 1109
Score = 125 (49.1 bits), Expect = 0.00052, P = 0.00052
Identities = 38/121 (31%), Positives = 58/121 (47%)
Query: 23 DVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDV 82
D A P G +VL+VDD+ L++L +++ + Y TT + VA +E F +
Sbjct: 976 DSAPPASGTHGNKVLIVDDNEINLKVLARLMSKLGYQHTTATNGLVAFTKYKESPNSFSM 1035
Query: 83 VLSDVHMPDMDGFKLLEHIGL---EMDLPVI----TDGRVSAVMR--GIRHGACDYLIKP 133
VL D+ MP MDG +I E L + G SA M+ + G +YL+KP
Sbjct: 1036 VLMDISMPVMDGIDATRNIRSYEWEKQLSSVKVFAVTGIGSAAMQHEALMAGVDEYLVKP 1095
Query: 134 I 134
+
Sbjct: 1096 L 1096
>TIGR_CMR|GSU_1891 [details] [associations]
symbol:GSU_1891 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 HSSP:P06143
RefSeq:NP_952940.1 ProteinModelPortal:Q74BY7 GeneID:2688472
KEGG:gsu:GSU1891 PATRIC:22026647 OMA:FATIRTH ProtClustDB:CLSK924546
BioCyc:GSUL243231:GH27-1919-MONOMER Uniprot:Q74BY7
Length = 379
Score = 119 (46.9 bits), Expect = 0.00053, P = 0.00053
Identities = 35/102 (34%), Positives = 55/102 (53%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
++V+DDD L L +L Y V + A A+ R G D+V++D++MP+M G
Sbjct: 9 IVVIDDDPYVLESLSALLVAYGYIVHPFGRGADAVH--RLSCGGIDIVITDINMPEMTGI 66
Query: 96 KLLEHIGLEM-DLPVIT-DG--RVSAVMRGIRHGACDYLIKP 133
++L I D+PVI G +S + I+ GA D++IKP
Sbjct: 67 EVLRAIRKSNPDVPVILMTGYAELSVAVEAIKQGAFDFIIKP 108
>UNIPROTKB|P0AA16 [details] [associations]
symbol:ompR species:83333 "Escherichia coli K-12"
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0035556
"intracellular signal transduction" evidence=IEA;IDA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
GO:GO:0045893 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 EMBL:U18997 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 EMBL:J01656
PIR:H65135 RefSeq:NP_417864.1 RefSeq:YP_492027.1 PDB:1ODD PDB:1OPC
PDB:2JPB PDBsum:1ODD PDBsum:1OPC PDBsum:2JPB
ProteinModelPortal:P0AA16 SMR:P0AA16 DIP:DIP-31859N IntAct:P0AA16
PaxDb:P0AA16 PRIDE:P0AA16 EnsemblBacteria:EBESCT00000000052
EnsemblBacteria:EBESCT00000000053 EnsemblBacteria:EBESCT00000000054
EnsemblBacteria:EBESCT00000000055 EnsemblBacteria:EBESCT00000017093
GeneID:12932273 GeneID:947913 KEGG:ecj:Y75_p3771 KEGG:eco:b3405
PATRIC:32122246 EchoBASE:EB0666 EcoGene:EG10672 KO:K07659
OMA:REPMSRD ProtClustDB:PRK09468 BioCyc:EcoCyc:OMPR-MONOMER
BioCyc:ECOL316407:JW3368-MONOMER EvolutionaryTrace:P0AA16
Genevestigator:P0AA16 Uniprot:P0AA16
Length = 239
Score = 115 (45.5 bits), Expect = 0.00055, P = 0.00055
Identities = 36/123 (29%), Positives = 64/123 (52%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++LVVDDD+ +LE+ L + V + + A +D L R+ F +++ D+ +P DG
Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAE-QMDRLLTRES-FHLMVLDLMLPGEDG 63
Query: 95 FKLLEHIGLEMD-LPVI-TDGRVSAVMR--GIRHGACDYLIKPIREEELKNIWQHVVRKR 150
+ + + + +P+I + V R G+ GA DY+ KP EL + V+R++
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
Query: 151 WNE 153
NE
Sbjct: 124 ANE 126
WARNING: HSPs involving 24 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 665 614 0.00088 120 3 11 22 0.43 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 274
No. of states in DFA: 616 (65 KB)
Total size of DFA: 321 KB (2164 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 57.11u 0.10s 57.21t Elapsed: 00:00:05
Total cpu time: 57.14u 0.10s 57.24t Elapsed: 00:00:05
Start: Sat May 11 03:40:52 2013 End: Sat May 11 03:40:57 2013
WARNINGS ISSUED: 2