BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006006
(665 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family
Of Plant Myb-Related Dna Binding Motifs Of The
Arabidopsis Response Regulators
Length = 64
Score = 87.4 bits (215), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/69 (57%), Positives = 56/69 (81%), Gaps = 5/69 (7%)
Query: 213 STTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQK 272
+ KKPRV+W+ ELH +F++AV+ LG+++AVPK+IL+LMNV LTRENVASH LQK
Sbjct: 1 TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASH-----LQK 55
Query: 273 FRLYLKRLN 281
FR+ LK+++
Sbjct: 56 FRVALKKVS 64
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L+VDDD T LE +LR Y V + AL + K D ++ DV +P +DG+
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQIY--KNLPDALICDVLLPGIDGY 64
Query: 96 KLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEEL----KNI 142
L + + L LP++ G +SA + G GA DYL KP +EL KNI
Sbjct: 65 TLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNI 121
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 12/136 (8%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVVDD +R+LE L Y V+T AL + + D++L DV MP MDG
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAM--AARDLPDIILLDVMMPGMDG 60
Query: 95 FKLLEHIG---LEMDLPVI----TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147
F + + +PV+ DGR + +G+ GA D+L KPI + L + +
Sbjct: 61 FTVCRKLKDDPTTRHIPVVLITALDGRGDRI-QGLESGASDFLTKPIDDVMLFARVRSLT 119
Query: 148 RKRW--NENKEHENSG 161
R + +E ++ E SG
Sbjct: 120 RFKLVIDELRQREASG 135
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ T+ + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 143 WQHV 146
++ +
Sbjct: 124 FEKL 127
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD+ T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 2 LKFLVVDDNSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 59
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 60 DGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 119
Query: 143 WQHV 146
++ +
Sbjct: 120 FEKL 123
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 12/136 (8%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVVDD +R+LE L Y V+T AL + + D++L DV MP MDG
Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAM--AARDLPDIILLDVMMPGMDG 61
Query: 95 FKLLEHIG---LEMDLPVI----TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147
F + + +PV+ DGR + +G+ GA D+L KPI + L + +
Sbjct: 62 FTVCRKLKDDPTTRHIPVVLITALDGRGDRI-QGLESGASDFLTKPIDDVMLFARVRSLT 120
Query: 148 RKRW--NENKEHENSG 161
R + +E ++ E SG
Sbjct: 121 RFKLVIDELRQREASG 136
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
RVLVVDD+ + +L L+ + V T + A ALD RE + D V+ DV P DG
Sbjct: 25 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRP--DAVILDVXXPGXDG 82
Query: 95 FKLLEHIGLE-MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150
F +L + + +D P + + + G+ G DY+ KP EE+ + ++R+
Sbjct: 83 FGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142
Query: 151 WNENKEHEN 159
NKE N
Sbjct: 143 GKGNKEPRN 151
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLP---VITDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LP VI + + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD+ T RI +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 2 LKFLVVDDNSTMRRITRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 59
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 60 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 119
Query: 143 WQHV 146
++ +
Sbjct: 120 FEKL 123
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 9/114 (7%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTT-CSQAAVALDILRERKGCFDVVLSDVHMPDM 92
+++L+VDD T RI++ +LR +N T AL +L+ KG FD V++D +MP M
Sbjct: 13 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGM 70
Query: 93 DGFKLLEHIGLEMD---LPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELK 140
G LL++I + + LPV+ + + ++ + G Y++KP LK
Sbjct: 71 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLK 124
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD+ T RI+ +L+ +N +A +D L + + G + V+SD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWRMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ ++ + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 143 WQHV 146
++ +
Sbjct: 124 FEKL 127
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++LVVDD+ ILE LR+ Y V A++++ E + D++L D+ +P+ DG
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP--DLILLDIMLPNKDG 61
Query: 95 FKLLEHIGLEMDLPVI----TDGRVSAVMRGIRHGACDYLIKPIREEEL 139
++ + + D+P+I D + V+ G+ GA DY+ KP EL
Sbjct: 62 VEVCREVRKKYDMPIIMLTAKDSEIDKVI-GLEIGADDYVTKPFSTREL 109
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD+ T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + V+ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD 91
A V ++DDD + ++Q L + V++ + A AL L +V+SD+ MP
Sbjct: 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFA--GIVISDIRMPG 59
Query: 92 MDGFKLLEHI-GLEMDLPVIT---DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147
MDG L I L+ DLP+I G + ++ I+ GA D++ KP + L +
Sbjct: 60 MDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAE 119
Query: 148 RKR 150
+KR
Sbjct: 120 KKR 122
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++LVVDD+ ILE LR+ Y V A++++ E + D++L D+ +P+ DG
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP--DLILLDIMLPNKDG 61
Query: 95 FKLLEHIGLEMDLPVI----TDGRVSAVMRGIRHGACDYLIKPIREEEL 139
++ + + D+P+I D + V+ G+ GA DY+ KP EL
Sbjct: 62 VEVCREVRKKYDMPIIMLTAKDSEIDKVI-GLEIGADDYVTKPFSTREL 109
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 143 WQHV 146
++ +
Sbjct: 124 FEKL 127
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 143 WQHV 146
++ +
Sbjct: 124 FEKL 127
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTPATLEEKLNKI 123
Query: 143 WQHV 146
++ +
Sbjct: 124 FEKL 127
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTPATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD+ T RI+ +L+ +N +A +D L + + G + V+SD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWMMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 143 WQHV 146
++ +
Sbjct: 124 FEKL 127
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 143 WQHV 146
++ +
Sbjct: 124 FEKL 127
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWRMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 143 WQHV 146
++ +
Sbjct: 124 FEKL 127
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 8/135 (5%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILR-ERKGCFDVVLSDVHMPDMDG 94
V VVDDD++ L +LR + V T A+ L+ R E+ GC ++ D+ MP M G
Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGC---LVLDMRMPGMSG 63
Query: 95 FKLLEHIGLEMD-LPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150
+L E + D +P++ G + +R ++ GA ++L KP E+ L + + ++
Sbjct: 64 IELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 123
Query: 151 WNENKEHENSGSLEE 165
+ E LE+
Sbjct: 124 AERRQARETQDQLEQ 138
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 6 LKFLVVDDGGTGRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 143 WQHV 146
++ +
Sbjct: 124 FEKL 127
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 7 LKFLVVDDFSTGRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 64
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 65 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 124
Query: 143 WQHV 146
++ +
Sbjct: 125 FEKL 128
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLP---VITDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LP VI + + ++ + GA +++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD+ T RI+ +L+ +N +A +D L + + G + V+SD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWMMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD 91
A V ++DDD + ++Q L + V++ + A AL L +V+SD+ MP
Sbjct: 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFA--GIVISDIRMPG 59
Query: 92 MDGFKLLEHI-GLEMDLPVIT---DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147
MDG L I L+ DLP+I G + ++ I+ GA D++ KP + L +
Sbjct: 60 MDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAE 119
Query: 148 RKR 150
KR
Sbjct: 120 EKR 122
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G F ++SD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGFGFIISDWNMPNM 63
Query: 93 DGFKLLEHIGLE---MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I + LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 143 WQHV 146
++ +
Sbjct: 124 FEKL 127
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD MP+M
Sbjct: 5 LKFLVVDDQSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWKMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G F ++SD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGFGFIISDWNMPNM 62
Query: 93 DGFKLLEHIGLE---MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I + LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPNM 66
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + ++ + GA Y++KP EE+L I
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 126
Query: 143 WQHV 146
++ +
Sbjct: 127 FEKL 130
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPNM 66
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + ++ + GA Y++KP EE+L I
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 126
Query: 143 WQHV 146
++ +
Sbjct: 127 FEKL 130
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 66/136 (48%), Gaps = 11/136 (8%)
Query: 21 AADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCF 80
+ D AV D + +LVVDD R+L L Y T + AL++L K
Sbjct: 119 STDKAVSDN--DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS--KNHI 174
Query: 81 DVVLSDVHMPDMDGFKLLEHI-GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIRE 136
D+VLSDV+MP+MDG++L + I L + LPVI + R + G L KP+
Sbjct: 175 DIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 234
Query: 137 EELK---NIWQHVVRK 149
+ +K ++ VRK
Sbjct: 235 DVIKQTLTLYAERVRK 250
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA +++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+S +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLP---VITDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LP VI + + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPNM 66
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + ++ + GA Y++KP EE+L I
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 126
Query: 143 WQHV 146
++ +
Sbjct: 127 FEKL 130
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPNM 66
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + ++ + GA Y++KP EE+L I
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 126
Query: 143 WQHV 146
++ +
Sbjct: 127 FEKL 130
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHIGLEM---DLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDKFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G F ++ D +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGFGFIICDWNMPNM 62
Query: 93 DGFKLLEHIGLE---MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I + LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+S +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+S +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 143 WQHV 146
++ +
Sbjct: 124 FEKL 127
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 9/123 (7%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+ +LVVDD R+L L Y T + AL++L K D+VLSDV+MP+MD
Sbjct: 9 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS--KNHIDIVLSDVNMPNMD 66
Query: 94 GFKLLEHI-GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELK---NIWQHV 146
G++L + I L + LPVI + R + G L KP+ + +K ++
Sbjct: 67 GYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAER 126
Query: 147 VRK 149
VRK
Sbjct: 127 VRK 129
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVV D T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 7 LKFLVVADFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 64
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 65 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 124
Query: 143 WQHV 146
++ +
Sbjct: 125 FEKL 128
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 4 LKFLVVDAFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 61
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 62 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 121
Query: 143 WQHV 146
++ +
Sbjct: 122 FEKL 125
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+S +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISAWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++LV+DD+ T L+ ++ +L V T S + L I E DVV++D+ MP + G
Sbjct: 5 KILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSG 64
Query: 95 FKLLEHIGL---EMDLPVIT-DGRVSAVMRGIRHGACDYLIKPIREEEL 139
+L I M + ++T G + + ++ GA +YL KP+ ++L
Sbjct: 65 MDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDL 113
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 143 WQHV 146
++ +
Sbjct: 124 FEKL 127
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+S +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLP---VITDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LP VI + + ++ + GA +++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 9/109 (8%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVVDDD + +L +LR ++ AL +RE + D+VL D+ +P M+G
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP--DLVLLDLMLPGMNG 64
Query: 95 FKLLEHIGLEMDLPVI-----TDGRVSAVMRGIRHGACDYLIKPIREEE 138
+ + + +P++ TD V+ G+ GA DY++KP + +E
Sbjct: 65 IDVCRVLRADSGVPIVMLTAKTD--TVDVVLGLESGADDYIMKPFKPKE 111
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
V VVDDD + +LE+ L TT L L + DV+LSD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSDIRMPGMDGL 63
Query: 96 KLLEHIGLEMD-LPVI---TDGRVSAVMRGIRHGACDYLIKPIREEE 138
LL+ I LPVI + A + + GA DYL KP +E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
V VVDDD + +LE+ L TT L L + DV+LSD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSDIRMPGMDGL 63
Query: 96 KLLEHIGLEMD-LPVI---TDGRVSAVMRGIRHGACDYLIKPIREEE 138
LL+ I LPVI + A + + GA DYL KP +E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
V VVDDD + +LE+ L TT L L + DV+LSD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSDIRMPGMDGL 63
Query: 96 KLLEHIGLEMD-LPVI---TDGRVSAVMRGIRHGACDYLIKPIREEE 138
LL+ I LPVI + A + + GA DYL KP +E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LV++DD +L L Y V A L ++ R+ D++L D+ +PD DG
Sbjct: 39 RILVIEDDHDIANVLRXDLTDAGYVVDHADSAXNGL--IKAREDHPDLILLDLGLPDFDG 96
Query: 95 FKLLEHIGLEMDLPVITDGRVSAVMRGIR---HGACDYLIKPIREEELKNIWQHVVRKRW 151
+++ + LP+I V +R GA DYLIKP +EL + +R+R
Sbjct: 97 GDVVQRLRKNSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRT 156
Query: 152 NEN 154
+E+
Sbjct: 157 SES 159
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+RVLVV+D+ ++ + L++ ++ V C + + FDVV+ D+ +P D
Sbjct: 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHD 60
Query: 94 GFKLLEHIGLE-MDLPVITDGRVSAV---MRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
G+++L+ + ++ PV+ +S V ++G+ GA DYL KP EL + ++R+
Sbjct: 61 GWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120
Query: 150 R 150
+
Sbjct: 121 K 121
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 8/138 (5%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+ VLV++DD +LE+ L V + + A +L E+ F+VVL + +PD++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLXLLLPDVN 58
Query: 94 GFKLLEHI---GLEMDLPVIT-DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV-- 147
G ++L+ I E ++ VIT G + + ++ GA D+L KP EE++ +
Sbjct: 59 GLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEH 118
Query: 148 RKRWNENKEHENSGSLEE 165
RK EN+ L+E
Sbjct: 119 RKLRKENELLRREKDLKE 136
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++LVVDD+ + + +L+ L R Y+V T S AL K D+++ DV +P +DG
Sbjct: 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKP--DLIVLDVMLPKLDG 62
Query: 95 FKLLEHIGLE-MDLPVI----TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
++ + + + + P++ D V+ G+ GA DY+ KP E+ + ++R+
Sbjct: 63 IEVCKQLRQQKLMFPILMLTAKDEEFDKVL-GLELGADDYMTKPFSPREVNARVKAILRR 121
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 12/116 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD 91
+RVL VDD +I+ +++ + V T VA D+++ K DV+ DV MP
Sbjct: 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIK--KFNPDVLTLDVEMPR 61
Query: 92 MDGFKLLEHIGLEMDLPVIT----DGRVSAV-MRGIRHGACDYLIKP---IREEEL 139
MDG LE + +PV+ G+ S V +R + GA D++ KP IRE L
Sbjct: 62 MDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGML 117
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 31 PAG-LRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVH 88
P G +++LVVDD T RI++ L R Y +V A + L + V+++D +
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL-DANADTKVLITDWN 60
Query: 89 MPDMDGFKLLEHIGLE---MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELK 140
MP+M+G L++ + + ++P+I T+G + V+ ++ G +Y++KP + LK
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
V VVDDD + +LE+ L TT L L + DV+LS + MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSXIRMPGMDGL 63
Query: 96 KLLEHIGLEMD-LPVI---TDGRVSAVMRGIRHGACDYLIKPIREEE 138
LL+ I LPVI + A + + GA DYL KP +E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 8/106 (7%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
+VL+V+D+ +++ +L Y + AL I RE K D++L D+ +P++ G
Sbjct: 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKP--DLILMDIQLPEISG 60
Query: 95 FKLLEHIGLEMDLPVITDGRVSA-VMRG----IRHGACD-YLIKPI 134
++ + + + DL I V+A M+G IR G C+ Y+ KPI
Sbjct: 61 LEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPI 106
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L++DDD L L + V L I + D+V+ D+ P +DG
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQP--DLVICDLRXPQIDGL 65
Query: 96 KLLEHI-GLEMDLPVIT---DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
+L+ I + P+I G +S + +R GA DYLIKP+ E+L + +H VR+
Sbjct: 66 ELIRRIRQTASETPIIVLSGAGVMSDAVEALRLGAADYLIKPL--EDLA-VLEHSVRR 120
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 28 DQFPAGLRVLVVDDDITCLRILEQMLRRC-LYNVTTCSQAAVALDIL------RERKGC- 79
D+F G RVLVVDD+ ++ L++ + V C AL ++ RE +G
Sbjct: 56 DEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSV 115
Query: 80 ----FDVVLSDVHMPDMDGFKLLEHI 101
FD + D MP+MDG++ I
Sbjct: 116 DKLPFDYIFMDCQMPEMDGYEATREI 141
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L++DDD L L + V L I + D+V+ D+ P +DG
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQP--DLVICDLRXPQIDGL 65
Query: 96 KLLEHI-GLEMDLPVIT---DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
+L+ I + P+I G S + +R GA DYLIKP+ E+L + +H VR+
Sbjct: 66 ELIRRIRQTASETPIIVLSGAGVXSDAVEALRLGAADYLIKPL--EDLA-VLEHSVRR 120
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
VL+V+D+ + L +LR+ + T + AL +R G D+VL D+ +P M G
Sbjct: 7 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEF-DRAGA-DIVLLDLMLPGMSGT 64
Query: 96 KLLEHIGLEMDLPVIT----DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151
+ + + +PVI D + V+ G+ GA DY+ KP EL + V+R+
Sbjct: 65 DVCKQLRARSSVPVIMVTARDSEIDKVV-GLELGADDYVTKPYSARELIARIRAVLRRGG 123
Query: 152 NENKEHENSGSLE 164
+++ E + G LE
Sbjct: 124 DDDSEMSD-GVLE 135
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 9/118 (7%)
Query: 31 PAG-LRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVH 88
P G +++LVVDD T RI++ L R Y +V A + L + V+++D +
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL-DANADTKVLITDWN 60
Query: 89 MPDMDGFKLLEHIGLE---MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELK 140
MP+M+G L++ + + ++P+I +G + V+ ++ G +Y++KP + LK
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVD T RI+ +L+ +N +A +D L + + G + V+SD + P+
Sbjct: 5 LKFLVVDKFSTXRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNXPNX 62
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA +++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAXSALPVLXVTAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 9/118 (7%)
Query: 31 PAG-LRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVH 88
P G +++LVVDD T RI++ L R Y +V A + L + V+++ +
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL-DANADTKVLITAWN 60
Query: 89 MPDMDGFKLLEHIGLE---MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELK 140
MP+M+G L++ + + ++P+I T+G + V+ ++ G +Y++KP + LK
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
L VL+ +D+ C + + L +C ++T + AL + R+ FDV++ D+ MP MD
Sbjct: 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQ--FDVIIMDIQMPVMD 68
Query: 94 GFKLLEHI 101
G + + I
Sbjct: 69 GLEAVSEI 76
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 49 LEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDL 107
LE+ LR + V T A AL E + D ++ D++MP +DG ++ + ++ D+
Sbjct: 23 LERGLRLSGFEVATAVDGAEALRSATENRP--DAIVLDINMPVLDGVSVVTALRAMDNDV 80
Query: 108 PVITDGRVSAV---MRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150
PV S+V + G+ GA DYL+KP EL + ++R+R
Sbjct: 81 PVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD 91
G RVL+VDD +L+ ++ + Y V + A++ +E K D+V D+ MP+
Sbjct: 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP--DIVTMDITMPE 59
Query: 92 MDGFKLLEHI-GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR 135
M+G ++ I ++ + +I G+ + V+ I+ GA D+++KP +
Sbjct: 60 MNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 107
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD 91
G RVL+VDD +L+ ++ + Y V + A++ +E K D+V D+ MP+
Sbjct: 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP--DIVTMDITMPE 58
Query: 92 MDGFKLLEHI-GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR 135
M+G ++ I ++ + +I G+ + V+ I+ GA D+++KP +
Sbjct: 59 MNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 106
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
RVLVVDD+ + L +L Y+ T A ++E F V++ DV MPD DG
Sbjct: 3 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKEL--FFPVIVLDVWMPDGDG 60
Query: 95 FKLLEHI---GLEMDLPVIT-DGRVSAVMRGIRHGACDYLIKPIREEEL 139
++ I + + VIT G V ++ I+ GA ++L KP E
Sbjct: 61 VNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERF 109
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDD+ I++ + + Y V T AL+ + D+++ D+ +P++DG
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQP--DIIILDLMLPEIDG 60
Query: 95 FKLLEHIGLEMDLPVI----TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
++ + I +P++ D V+ G+ GA DY+ KP EL+ + ++R+
Sbjct: 61 LEVAKTIRKTSSVPILMLSAKDSEFDKVI-GLELGADDYVTKPFSNRELQARVKALLRR 118
>pdb|3HV2|A Chain A, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
pdb|3HV2|B Chain B, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
Length = 153
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L+VD L+ L+Q+L Y + A AL +L R+ D+V+S H+P MDG
Sbjct: 17 ILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGP 74
Query: 96 KLLEHIGLEMDLPVIT------DGRVSAVMRGIRHGAC-DYLIKPIREEEL 139
LL I P T D + + + I G YL KP ++EL
Sbjct: 75 TLLARI--HQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQEL 123
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDMDG 94
V +VDD+ + L ML + V A L + R G V+++D+ MPDM G
Sbjct: 6 VHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNG---VLVTDLRMPDMSG 62
Query: 95 FKLLEHIG-LEMDLPVIT---DGRVSAVMRGIRHGACDYLIKPIRE----EELKNIWQHV 146
+LL ++G L++++P I G V + ++ GA D++ KP + E ++ +H+
Sbjct: 63 VELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHL 122
Query: 147 V 147
V
Sbjct: 123 V 123
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 11/115 (9%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+ VLVVDD T LR+ L V S A AL L E+ +VL D + P++D
Sbjct: 125 IEVLVVDDSRTSRHRTXAQLRKQLLQVHEASHAREALATL-EQHPAIRLVLVDYYXPEID 183
Query: 94 GFKLLEHIG---LEMDLPVI----TDGR-VSAVMRGIRHGACDYLIKPIREEELK 140
G L+ + + L +I +D R +SA R ++ GA D+L +P EEL+
Sbjct: 184 GISLVRXLRERYSKQQLAIIGISVSDKRGLSA--RYLKQGANDFLNQPFEPEELQ 236
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 18/180 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAA----VALDILRERKGCFDVVLSDVHM 89
+RVLVV+D+ ++ + L++ + V C AL+ FDVV+ D+ +
Sbjct: 3 VRVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALN------EPFDVVILDIXL 56
Query: 90 PDMDGFKLLEHIGLE-MDLPVITDGRVSAV---MRGIRHGACDYLIKPIREEELKNIWQH 145
P DG+++L+ ++ PV+ +S V ++G+ GA DYL KP EL +
Sbjct: 57 PVHDGWEILKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRA 116
Query: 146 VVRKRWNENKEHENSGSL---EETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEE 202
++R++ G L T RGS EI+ + E + R+ KEE
Sbjct: 117 LIRRKSESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILE-YLVXNKNRVVTKEE 175
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 13/124 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVV + T + +L+ +N A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVGNGGTGKSTVRNLLKELGFN--NVEDAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 142
DG +LL+ I G LPV+ + + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 143 WQHV 146
++ +
Sbjct: 123 FEKL 126
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCF--DVVLSDVHM 89
G ++L+V+D+ +L+ + AL++L G F D+++ D+ M
Sbjct: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL----GGFTPDLMICDIAM 61
Query: 90 PDMDGFKLLEHI---GLEMDLPVITDGR-VSAVMRGIRHGACDYLIKPIRE 136
P M+G KLLEHI G + + VI+ ++ + + +R G D L+KP+++
Sbjct: 62 PRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD 112
>pdb|2QR3|A Chain A, Crystal Structure Of The N-Terminal Signal Receiver Domain
Of Two- Component System Response Regulator From
Bacteroides Fragilis
Length = 140
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 11/113 (9%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD---- 91
+++VDD+ L ++ +L+ V T S +LRE +VVL D++
Sbjct: 6 IIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENP--EVVLLDMNFTSGINN 63
Query: 92 -MDGFKLLEHIGLEM-DLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEEL 139
+G L I + DLPV+ + +RGI+ GA D+++KP ++L
Sbjct: 64 GNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKL 116
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
RVLVVDD+ + L +L Y+ T A ++E F V++ DV PD DG
Sbjct: 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKEL--FFPVIVLDVWXPDGDG 59
Query: 95 FKLLEHI---GLEMDLPVIT-DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 145
++ I + + VIT G V ++ I+ GA ++L KP E +H
Sbjct: 60 VNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKH 114
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDD +L ++ + Y + ALDI+ + + D+VL D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 95 FKLLEHIG-LEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKN 141
++L+ + ++ ++ VI G + + GA + KP +E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDD +L ++ + Y + ALDI+ + + D+VL D+ +P MDG
Sbjct: 7 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 64
Query: 95 FKLLEHIG-LEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKN 141
++L+ + ++ ++ VI G + + GA + KP +E+++
Sbjct: 65 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 115
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDD+ I++ + + Y V T AL+ + D+++ + +P++DG
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQP--DIIILXLMLPEIDG 60
Query: 95 FKLLEHIGLEMDLPVIT----DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
++ + I +P++ D V+ G+ GA DY+ KP EL+ + ++R+
Sbjct: 61 LEVAKTIRKTSSVPILMLSAKDSEFDKVI-GLELGADDYVTKPFSNRELQARVKALLRR 118
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 16/124 (12%)
Query: 22 ADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKG 78
AD AVP RVL+ +D+ L +MLR Y + + Q AV L L +
Sbjct: 8 ADAAVPR------RVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKP-- 59
Query: 79 CFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITDGRVSA---VMRGIRHGACDYLIKPIR 135
D+V+ DV MP DG I + P++ S V R GA YL+KP
Sbjct: 60 --DLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFS 117
Query: 136 EEEL 139
+L
Sbjct: 118 ISDL 121
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
+R+LV DD +L+++L + + V + A LD + E +D V+ D+HMP M
Sbjct: 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEED--YDAVIVDLHMPGM 71
Query: 93 DGFKLLEHI------GLEMDLPVITDGRVS--AVMRGIRHGACDYLIKPIREEEL 139
+G +L+ + G+ V+ V+ A+ + GA +L KP+ +L
Sbjct: 72 NGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKL 126
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDMDG 94
V +VDD+ + L ML + V A L + R G V+++ + MPDM G
Sbjct: 6 VHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNG---VLVTXLRMPDMSG 62
Query: 95 FKLLEHIG-LEMDLPVIT---DGRVSAVMRGIRHGACDYLIKPIRE----EELKNIWQHV 146
+LL ++G L++++P I G V + ++ GA D++ KP + E ++ +H+
Sbjct: 63 VELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHL 122
Query: 147 V 147
V
Sbjct: 123 V 123
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 16/135 (11%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L+V+D T L+ +L Y A+ L + D+++SDV MP+MDG+
Sbjct: 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRP--DLIISDVLMPEMDGY 67
Query: 96 KLLEHIGLEMDL---PVITDGRVS---AVMRGIRHGACDYLIKPIREEELKNIWQHVVR- 148
L + + DL PVI +S V+R + GA D++ KP ++ L + HV R
Sbjct: 68 ALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLAS---HVKRL 124
Query: 149 ----KRWNENKEHEN 159
KR E E+
Sbjct: 125 LSGVKRTEERYSRES 139
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
+VL+VDD +I+ L++ Y V +AL+ L E D+++ D+ MP MDG
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTP--DLIVLDIMMPVMDG 61
Query: 95 FKLLEHI 101
F +L+ +
Sbjct: 62 FTVLKKL 68
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDD +L ++ + Y + ALDI+ + + D+VL D+ +P MDG
Sbjct: 3 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 60
Query: 95 FKLLEHIG-LEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKN 141
++L+ + ++ ++ VI G + + GA + KP +E+++
Sbjct: 61 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 111
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
RVL+V+D + + +Q ++ Y++ A+ + K +++ D+ +PDM G
Sbjct: 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKP--QLIILDLKLPDMSG 63
Query: 95 FKLLEHIGLEMDLPV-----ITDGRVSAVMRGIRHGACDYLIKPIREEELK-NIWQHVVR 148
+L+ I + D+P G V + I+ GA D+L KPI + LK ++ H+ R
Sbjct: 64 EDVLDWIN-QNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKR 122
Query: 149 KRWNE 153
+ +
Sbjct: 123 AKLED 127
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDD +L ++ + Y + ALDI+ + + D+VL D+ +P MDG
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 95 FKLLEHIG-LEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKN 141
++L+ + ++ ++ VI G + + GA + KP +E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVV+D+ ++ +L + + A++ L E D++L D +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP--DLILLDWMLPGGSG 61
Query: 95 FKLLEHIGLE---MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148
+ ++H+ E D+PV+ G +RG+ GA DY+ KP +EL + V+R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 149 K 149
+
Sbjct: 122 R 122
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++ VVDDD L+ + + L++ L V T D L + + F VV+ DV +PD G
Sbjct: 4 KIAVVDDDKNILKKVSEKLQQ-LGRVKTFLTGE---DFLNDEEA-FHVVVLDVXLPDYSG 58
Query: 95 FKLLEHIGLE------MDLPVITDGRVSAVMRGIRHGACDYLIKPIREEEL 139
+++ I + L +++D +V++G GA DY+ KP E L
Sbjct: 59 YEICRXIKETRPETWVILLTLLSDDE--SVLKGFEAGADDYVTKPFNPEIL 107
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++ VVDDD L+ + + L++ L V T D L + + F VV+ DV +PD G
Sbjct: 4 KIAVVDDDKNILKKVSEKLQQ-LGRVKTFLTGE---DFLNDEEA-FHVVVLDVXLPDYSG 58
Query: 95 FKLLEHIGLE------MDLPVITDGRVSAVMRGIRHGACDYLIKPIREEEL 139
+++ I + L +++D +V++G GA DY+ KP E L
Sbjct: 59 YEICRXIKETRPETWVILLTLLSDDE--SVLKGFEAGADDYVTKPFNPEIL 107
>pdb|2RJN|A Chain A, Crystal Structure Of An Uncharacterized Protein Q2bku2
From Neptuniibacter Caesariensis
Length = 154
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 15/113 (13%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGC-FDVVLSDVHMPDMDG 94
V++VDD+ L L+++++R N+ T + LD L KG +V+SD+ MP+M G
Sbjct: 10 VMLVDDEQPILNSLKRLIKRLGCNIITFTSP---LDALEALKGTSVQLVISDMRMPEMGG 66
Query: 95 FKLLEHIGL---EMDLPVIT-----DGRVSAVMRGIRHGACDYLIKPIREEEL 139
LE + +++ VI+ + AV RG +L+KP +E++
Sbjct: 67 EVFLEQVAKSYPDIERVVISGYADAQATIDAVNRG---KISRFLLKPWEDEDV 116
>pdb|3EQZ|A Chain A, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
pdb|3EQZ|B Chain B, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
Length = 135
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
RV +VDDD +L+ ++ NV L + ++ D+++ D+ MPDMDG
Sbjct: 5 RVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNKQ---DIIILDLMMPDMDG 61
Query: 95 FKLLEHIG 102
+++ H+
Sbjct: 62 IEVIRHLA 69
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDD +L ++ + Y + ALDI+ + + D+VL D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 95 FKLLEHIG-LEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKN 141
++L+ + ++ ++ VI G + GA + KP +E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMAQESKELGALTHFAKPFDIDEIRD 113
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDD +L ++ + Y + ALDI+ + + D+VL D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 95 FKLLEHIG-LEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKN 141
++L+ + ++ ++ VI G + + GA KP +E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTAFAKPFDIDEIRD 113
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDD +L ++ + Y + ALDI+ + + D+VL D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 95 FKLLEHIG-LEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKN 141
++ + + ++ ++ VI G + + GA + KP +E+++
Sbjct: 63 IEIAKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVV+D+ ++ +L + + A++ L E D++L D +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGSG 61
Query: 95 FKLLEHIGLE---MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148
+ ++H+ E D+PV+ G +RG+ GA DY+ KP +EL + V+R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 149 K 149
+
Sbjct: 122 R 122
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L+V+D++ L+ + Y+V + A IL E ++V+ D+++P +G
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEXHQILSEYD--INLVIXDINLPGKNGL 63
Query: 96 ----KLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEEL 139
+L E + + D V ++ G+ GA DY+ KP EL
Sbjct: 64 LLARELREQANVALXFLTGRDNEVDKIL-GLEIGADDYITKPFNPREL 110
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium
Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 36.2 bits (82), Expect = 0.059, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
++VL+VDD +T +L L++ + +T + I+ + +V+SD +MP M
Sbjct: 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNP--HHLVISDFNMPKM 64
Query: 93 DGFKLLEHIGLEMD------LPVITDGRVSAVMRGIRHGACDYLIKPIREEELK 140
DG LL+ + + + G + V + GA + L KP E++K
Sbjct: 65 DGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMK 118
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L+V+D++ L+ + Y+V + A IL E ++V+ D+++P +G
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGKNGL 63
Query: 96 KLLEHIGLEMDLPVI----TDGRVSAVMRGIRHGACDYLIKPIREEEL 139
L + + ++ ++ D V ++ G+ GA DY+ KP EL
Sbjct: 64 LLARELREQANVALMFLTGRDNEVDKIL-GLEIGADDYITKPFNPREL 110
>pdb|3CG4|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (Chey- Like) From Methanospirillum Hungatei Jf-1
Length = 142
Score = 35.8 bits (81), Expect = 0.070, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
V +VDDD ++ +L +++ + +D+L+ KG VVL D+ P DG+
Sbjct: 10 VXIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLK--KGFSGVVLLDIXXPGXDGW 67
Query: 96 KLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEEL 139
+ I LE + ++ A G++ DY+ KP E+L
Sbjct: 68 DTIRAILDNSLEQGIAIVXLTAKNAPDAKXIGLQEYVVDYITKPFDNEDL 117
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 35.8 bits (81), Expect = 0.080, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
+VL+VDD +I+ L++ Y V +AL+ L E D+++ + MP MDG
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTP--DLIVLXIMMPVMDG 61
Query: 95 FKLLEHI 101
F +L+ +
Sbjct: 62 FTVLKKL 68
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 35.8 bits (81), Expect = 0.082, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDD +L ++ + Y + ALDI+ + + D+VL + +P MDG
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLXMKIPGMDG 62
Query: 95 FKLLEHIG-LEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKN 141
++L+ + ++ ++ VI G + + GA + KP +E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|2LPM|A Chain A, Chemical Shift And Structure Assignments For Sma0114
Length = 123
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
LRVLVV+D+ ++E L + V T S+ ALDI RKG FD+ + DV++
Sbjct: 9 LRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDI--ARKGQFDIAIIDVNLDGE 66
Query: 93 DGFKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
+ + + + E ++P I + R+ L KP + EL+ + + ++
Sbjct: 67 PSYPVADILA-ERNVPFIFATGYGSKGLDTRYSNIPLLTKPFLDSELEAVLVQISKE 122
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 35.4 bits (80), Expect = 0.094, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 81 DVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI---TDGRVSAVMRGIRHGACDYLIKPI 134
D++L + +P G + ++H+ E D+PV+ G +RG+ GA DY+ KP
Sbjct: 48 DLILLEWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 135 REEELKNIWQHVVRK 149
+EL + V+R+
Sbjct: 108 SPKELVARIKAVMRR 122
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+LVVDD + + L R Y T L+ L D+VL D+ DG+
Sbjct: 6 ILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEALNATPP--DLVLLDIXXEPXDGW 63
Query: 96 KLLEHIGLE---MDLPVIT-DGRVSAVMRGIRHGAC--DYLIKPIREEELKNIWQHVVRK 149
+ LE I + D+PV+ + +G+ DY++KP +L +HV+ +
Sbjct: 64 ETLERIKTDPATRDIPVLXLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123
Query: 150 R 150
R
Sbjct: 124 R 124
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 8/141 (5%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+ VLV++DD +LE+ L V + + A +L E+ F+VVL D+ +PD++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLDLLLPDVN 58
Query: 94 GFKLLEHIGL---EMDLPVIT-DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV-- 147
G ++L+ I E ++ VIT G + + ++ GA D+L KP EE++ +
Sbjct: 59 GLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEH 118
Query: 148 RKRWNENKEHENSGSLEETDH 168
RK EN+ L+E ++
Sbjct: 119 RKLRKENELLRREKDLKEEEY 139
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 34 LRVLVVDDDITCLRILEQML--RRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD 91
++V + DD+ + +L++ + + + + T L +L E++ D++L D+ MP
Sbjct: 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRP--DILLLDIIMPH 60
Query: 92 MDGFKLLEHI--GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146
+DG +LE I G E VI G+ + + GA +++KP +++N+ H+
Sbjct: 61 LDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPF---DMENLAHHI 117
>pdb|3CRN|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei
Jf-1
pdb|3CRN|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei
Jf-1
Length = 132
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+L+VDDD L +Q+L Y V + A L + F++ L + +PD +G
Sbjct: 5 RILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENE--FFNLALFXIKLPDXEG 62
Query: 95 FKLLE 99
+LLE
Sbjct: 63 TELLE 67
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
VL+VDD + ++ L Q+ +N+ T + A+ + D+V + MP MDG
Sbjct: 39 VLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDG 98
Query: 95 FKLLEHIGLEMD-----LPVITDGRVSAVMRGIRHGACDYLIKPI 134
L +I +E D + + G+ V + GA +++KP+
Sbjct: 99 ITCLSNI-MEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPL 142
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
V+V D+ +T R L+ + Y V+ + A +I + + D++L D+++PD +G
Sbjct: 6 VIVEDEPVTQAR-LQSYFTQEGYTVSVTASGAGLREIXQNQ--SVDLILLDINLPDENGL 62
Query: 96 KLLEHIGLEMDLPVI-TDGRVSAVMR--GIRHGACDYLIKPIREEEL 139
L + + +I GR + R G+ GA DY+ KP+ EL
Sbjct: 63 XLTRALRERSTVGIILVTGRSDRIDRIVGLEXGADDYVTKPLELREL 109
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 34 LRVLVVDDDITCLRILEQML--RRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD 91
+RVLVVDD +L+ ++ + + V A++ E K DV+ D+ MP+
Sbjct: 26 IRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKP--DVITMDIEMPN 83
Query: 92 MDGFKLLEHIGLEMDLPVI-----TDGRVSAVMRGIRHGACDYLIKP 133
++G + L+ I + VI T+ + + +R+GA D++ KP
Sbjct: 84 LNGIEALKLIMKKAPTRVIMVSSLTEEGAAITIEALRNGAVDFITKP 130
>pdb|2QV0|A Chain A, Crystal Structure Of The Response Regulatory Domain Of
Protein Mrke From Klebsiella Pneumoniae
pdb|2QV0|B Chain B, Crystal Structure Of The Response Regulatory Domain Of
Protein Mrke From Klebsiella Pneumoniae
Length = 143
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAV------ALDILR-ERKGCFDVVLSD 86
++V++V+D+ + L + + T SQ + LD+L+ + D + D
Sbjct: 10 MKVIIVEDEFLAQQELSWL-------INTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLD 62
Query: 87 VHMPDMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIW 143
+++P +DG L ++I P I T + AV A DY++KP +E + N+
Sbjct: 63 INIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAV-EAFELEAFDYILKPYQESRIINML 121
Query: 144 QHVVRKRWNENKEHE 158
Q + +N E
Sbjct: 122 QKLTTAWEQQNNAAE 136
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 13/120 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLR-RCLYNVTTCSQAAVALDILRE--RKG-CFDVVLSDVHM 89
+++LVV+D+ ++++ML + N+ A D ++E KG ++++ DV M
Sbjct: 2 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQM 61
Query: 90 PDMDGFKLLEHIGLEMDL----PVITDGRV---SAVMRGIRHGACDYLIKPIREEELKNI 142
P +DG LL + DL P++ S + + G +L KPI+ +LK I
Sbjct: 62 PKVDG--LLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 119
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFD--VVLSDVHM 89
R+LVVDDD +E++L+R + V A + L F+ ++ D+ M
Sbjct: 8 RILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKL-------STFEPAIMTLDLSM 60
Query: 90 PDMDGFKLLE-----HIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEEL 139
P +DG ++ + + + V++ + + + + GA DYL KP + L
Sbjct: 61 PKLDGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDAL 115
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 34 LRVLVVDDDITCLRILEQMLR-RCLYNVTTCSQAAVALDILRE--RKG-CFDVVLSDVHM 89
+++LVV+D+ ++++ML + N+ A D ++E KG ++++ DV M
Sbjct: 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQM 62
Query: 90 PDMDGFKLLEHIGLEMDL----PVITDGRV---SAVMRGIRHGACDYLIKPIREEELKNI 142
P +DG LL + DL P++ S + + G +L KPI+ +LK I
Sbjct: 63 PKVDG--LLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 120
Query: 143 W 143
Sbjct: 121 L 121
>pdb|3CU5|A Chain A, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
pdb|3CU5|B Chain B, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
Length = 141
Score = 32.3 bits (72), Expect = 0.84, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILR-ERKGCFDVVLSDVHMPDM 92
LR+L+VDD+ L + + QA ++ ++ K +V+L+DV MP M
Sbjct: 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVRMPRM 62
Query: 93 DGFKLLEHI-GLEMDLPVITDGRVSA---VMRGIRHGACDYLIKPIREEELKNIWQHVVR 148
DG +L+++I L D VI S + I+ A Y+ KPI E+ + + ++
Sbjct: 63 DGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQ 122
Query: 149 KRWNENKEHENSG 161
+ ++ G
Sbjct: 123 TVLQHQAQQDSEG 135
>pdb|3KCN|A Chain A, The Crystal Structure Of Adenylate Cyclase From
Rhodopirellula Baltica
pdb|3KCN|B Chain B, The Crystal Structure Of Adenylate Cyclase From
Rhodopirellula Baltica
Length = 151
Score = 32.3 bits (72), Expect = 0.84, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+L+VDDD + L L++ L + VTTC AL ++ + F V+ D P +G
Sbjct: 6 RILLVDDDYSLLNTLKRNL-SFDFEVTTCESGPEALACIK-KSDPFSVIXVDXRXPGXEG 63
Query: 95 FKLLE 99
++++
Sbjct: 64 TEVIQ 68
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex
With Chey6 From R. Sphaeroides
Length = 145
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 37 LVVDDDITCLRILEQMLRRCLYNVTTCSQAA---VALDILRERKGCFDVVLSDVHMPDMD 93
+++ DD +R+ + L + +QAA ALD L + D++L D+ MP MD
Sbjct: 16 VMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNV-DLILLDIEMPVMD 74
Query: 94 GFKLLEHIGLE 104
G + L H L+
Sbjct: 75 GMEFLRHAKLK 85
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDIL-------RERKGCFDVVLSD 86
++ ++DD+ R++E+ +RR N + + AL+ L R G +VL D
Sbjct: 7 IVXIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLD 66
Query: 87 VHMPDMDGFKLLE------HIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELK 140
+++PD G +L+ H + + T + R GA Y+ KP+ E
Sbjct: 67 LNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFA 126
Query: 141 N 141
N
Sbjct: 127 N 127
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 34 LRVLVVDDDITCLRILEQML--RRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD 91
++V + DD+ + +L++ + + + + T L +L E++ D++L + MP
Sbjct: 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRP--DILLLXIIMPH 60
Query: 92 MDGFKLLEHI--GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146
+DG +LE I G E VI G+ + + GA +++KP +++N+ H+
Sbjct: 61 LDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPF---DMENLAHHI 117
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L++D D + L+ L ++ A+ + K +D++ ++ + D DG
Sbjct: 6 KILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNK--YDLIFLEIILSDGDG 63
Query: 95 FKLLEHIGLEMDLPVITDGRVS---AVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
+ L + I P++ ++ +++ + G DYLIKP+ E L + ++R+
Sbjct: 64 WTLCKKIRNVTTCPIVYXTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRR 121
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVV+D+ ++ +L + + A++ L E D++L +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP--DLILLAWMLPGGSG 61
Query: 95 FKLLEHIGLE---MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148
+ ++H+ E D+PV+ G +RG+ GA D + KP +EL + V+R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121
Query: 149 K 149
+
Sbjct: 122 R 122
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVV+D+ ++ +L + + A++ L E D++L +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP--DLILLAWMLPGGSG 61
Query: 95 FKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148
+ ++H+ + D+PV+ G +RG+ GA D + KP +EL + V+R
Sbjct: 62 IQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121
Query: 149 K 149
+
Sbjct: 122 R 122
>pdb|3GRC|A Chain A, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|B Chain B, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|C Chain C, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|D Chain D, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
Length = 140
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+L+ +DD R+L L + ++ AA AL+ + R V D+++PD DG
Sbjct: 8 RILICEDDPDIARLLNLXLEKGGFDSDXVHSAAQALEQVARRPYAAXTV--DLNLPDQDG 65
Query: 95 FKLLEHI 101
L+ +
Sbjct: 66 VSLIRAL 72
>pdb|3KYI|B Chain B, Crystal Structure Of The Phosphorylated P1 Domain Of Chea3
In Complex With Chey6 From R. Sphaeroides
Length = 145
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 37 LVVDDDITCLRILEQMLRRCLYNVTTCSQAA---VALDILRERKGCFDVVLSDVHMPDMD 93
+++ DD +R+ + L + +QAA ALD L + D++L ++ MP MD
Sbjct: 16 VMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNV-DLILLNIEMPVMD 74
Query: 94 GFKLLEHIGLE 104
G + L H L+
Sbjct: 75 GMEFLRHAKLK 85
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+V+D+ + + + M+++ + + + A+ + +D+VL DV MP +DG
Sbjct: 10 KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAINSSS--YDLVLMDVCMPVLDG 67
Query: 95 FK 96
K
Sbjct: 68 LK 69
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
RVLVV+D+ L+ ++ + V A A L E D+ + D+ +PD DG
Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEH--IPDIAIVDLGLPDEDG 59
Query: 95 FKLLEHI-GLEMDLPVIT-DGRVSA--VMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149
L+ ++ LP++ R S + + GA DY+ KP EE+ Q + R+
Sbjct: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVXARXQALXRR 118
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVVDD+ +L++ L+ Y + T AL + G +D+V+ D+ MP + G
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALK--KFFSGNYDLVILDIEMPGISG 60
Query: 95 FKLLEHI-GLEMDLPVITDGRVSAVMRGIRHGACD-YLIKPIREEELK 140
++ I + D +I S + A D Y++K +ELK
Sbjct: 61 LEVAGEIRKKKKDAKIILLTAYSHYRSDLSSWAADEYVVKSFNFDELK 108
>pdb|2QXY|A Chain A, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
pdb|2QXY|B Chain B, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
Length = 142
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
V VVD+ ++ L + +NV A LR K D+V DV + +
Sbjct: 7 VXVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREK--IDLVFVDVFEGE-ESL 63
Query: 96 KLLEHIGLEMDLPVITDGRVSA------VMRGIRHGACDYLIKPIREEEL 139
L+ I E P +SA ++ ++ GA DY++KP R + L
Sbjct: 64 NLIRRIREE--FPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYL 111
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
VL+V+D+ R L L V L RK D+++ D+ +PD DG
Sbjct: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKP--DLIILDLGLPDGDGI 61
Query: 96 KLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELK 140
+ + + +PVI S + + GA DYL KP EL+
Sbjct: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQ 109
>pdb|1GXG|A Chain A, Non-Cognate Protein-Protein Interactions: The Nmr
Structure Of The Colicin E8 Inhibitor Protein Im8 And
Its Interaction With The Dnase Domain Of Colicin E9
Length = 85
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 136 EEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGT 186
E E K I + ++ +E K+ +N H GSD I Y N+G+
Sbjct: 12 ETEFKKIIEDIINCEGDEKKQDDNLEHFISVTEHPSGSDLIYYPEGNNDGS 62
>pdb|1GXH|A Chain A, Colicin E8 Dnase Immunity Protein: Im8
Length = 85
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 136 EEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGT 186
E E K I + ++ +E K+ +N H GSD I Y N+G+
Sbjct: 12 ETEFKKIIEDIINCEGDEKKQDDNLEHFISVTEHPSGSDLIYYPEGNNDGS 62
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 23/128 (17%)
Query: 36 VLVVDDDITCLRILEQMLRRCL-----YNVTTCSQAAVALDILRERKGCFDVVLSDVHMP 90
VL+VDD ++ + +RR L + CS A+ + + K V+L D+ MP
Sbjct: 21 VLLVDDQA----MIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIKPT--VILQDLVMP 74
Query: 91 DMDGFKLLEHIG---LEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQ 144
+DG LL D+P+I T + GA DYL+K L + +
Sbjct: 75 GVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVK------LPDAIE 128
Query: 145 HVVRKRWN 152
V R R++
Sbjct: 129 LVARIRYH 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,840,095
Number of Sequences: 62578
Number of extensions: 716376
Number of successful extensions: 1932
Number of sequences better than 100.0: 152
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 136
Number of HSP's that attempted gapping in prelim test: 1828
Number of HSP's gapped (non-prelim): 157
length of query: 665
length of database: 14,973,337
effective HSP length: 105
effective length of query: 560
effective length of database: 8,402,647
effective search space: 4705482320
effective search space used: 4705482320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)