Query 006006
Match_columns 665
No_of_seqs 407 out of 2418
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 16:59:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4753 Response regulator con 100.0 8.6E-32 1.9E-36 295.4 16.5 116 33-150 1-123 (475)
2 COG2197 CitB Response regulato 99.8 1.4E-18 3E-23 174.5 16.6 167 34-202 1-180 (211)
3 COG0745 OmpR Response regulato 99.8 4.7E-18 1E-22 173.1 15.3 115 34-151 1-120 (229)
4 COG4565 CitB Response regulato 99.8 1.7E-17 3.7E-22 165.7 18.1 116 34-151 1-122 (224)
5 COG4566 TtrR Response regulato 99.8 4.2E-18 9.1E-23 167.3 12.6 169 31-202 2-174 (202)
6 PRK11091 aerobic respiration c 99.7 2.2E-16 4.7E-21 183.9 18.4 148 1-150 473-646 (779)
7 COG2204 AtoC Response regulato 99.7 1.5E-16 3.2E-21 175.9 15.8 116 34-151 5-124 (464)
8 PRK11466 hybrid sensory histid 99.7 5E-16 1.1E-20 183.2 18.4 149 1-150 630-801 (914)
9 PRK15347 two component system 99.7 6.8E-16 1.5E-20 181.6 19.1 114 33-148 690-811 (921)
10 PF00072 Response_reg: Respons 99.7 1E-15 2.2E-20 134.1 14.8 107 36-144 1-112 (112)
11 TIGR02956 TMAO_torS TMAO reduc 99.7 1.1E-15 2.3E-20 181.1 18.4 147 1-149 651-823 (968)
12 PRK10046 dpiA two-component re 99.7 3E-15 6.5E-20 149.6 18.3 119 31-151 2-126 (225)
13 PRK10841 hybrid sensory kinase 99.7 2E-15 4.3E-20 180.4 19.9 116 33-150 801-920 (924)
14 PRK10840 transcriptional regul 99.7 3.2E-15 7E-20 147.6 16.8 168 33-202 3-182 (216)
15 PRK09959 hybrid sensory histid 99.6 2.1E-15 4.5E-20 183.2 18.5 146 1-148 904-1075(1197)
16 PRK09483 response regulator; P 99.6 5.9E-15 1.3E-19 143.0 17.9 165 34-200 2-178 (217)
17 PRK11107 hybrid sensory histid 99.6 3.1E-15 6.7E-20 175.8 18.4 115 33-149 667-787 (919)
18 COG0784 CheY FOG: CheY-like re 99.6 4.5E-14 9.8E-19 126.6 16.3 116 32-148 4-125 (130)
19 PRK10336 DNA-binding transcrip 99.6 8E-14 1.7E-18 134.7 17.8 150 34-185 1-164 (219)
20 COG3437 Response regulator con 99.6 1.2E-14 2.7E-19 154.6 13.0 118 30-149 11-135 (360)
21 PRK09958 DNA-binding transcrip 99.6 8.2E-14 1.8E-18 133.7 17.4 160 34-195 1-168 (204)
22 PRK10430 DNA-binding transcrip 99.6 2.1E-13 4.6E-18 137.3 20.9 115 34-148 2-122 (239)
23 PRK10643 DNA-binding transcrip 99.6 1.2E-13 2.6E-18 133.4 17.8 115 34-150 1-119 (222)
24 PRK10360 DNA-binding transcrip 99.6 7.8E-14 1.7E-18 133.0 15.9 157 34-196 2-163 (196)
25 PRK10529 DNA-binding transcrip 99.6 1E-13 2.2E-18 135.3 16.5 115 34-150 2-119 (225)
26 PRK11517 transcriptional regul 99.6 1.5E-13 3.3E-18 133.4 17.2 151 34-186 1-163 (223)
27 PRK10955 DNA-binding transcrip 99.5 2E-13 4.3E-18 133.3 17.4 152 34-188 2-174 (232)
28 TIGR02154 PhoB phosphate regul 99.5 2E-13 4.4E-18 131.9 16.7 150 34-185 3-169 (226)
29 COG3947 Response regulator con 99.5 2E-14 4.4E-19 149.2 10.2 115 34-150 1-117 (361)
30 PRK10816 DNA-binding transcrip 99.5 2E-13 4.4E-18 133.3 16.4 115 34-150 1-119 (223)
31 PRK11173 two-component respons 99.5 1.9E-13 4.2E-18 135.5 16.4 115 34-150 4-121 (237)
32 PRK11083 DNA-binding response 99.5 5.3E-13 1.1E-17 129.5 18.2 150 34-185 4-169 (228)
33 PLN03029 type-a response regul 99.5 2.2E-13 4.7E-18 137.6 16.0 119 32-150 7-149 (222)
34 TIGR03787 marine_sort_RR prote 99.5 7.9E-13 1.7E-17 129.2 19.1 149 35-185 2-171 (227)
35 PRK09836 DNA-binding transcrip 99.5 3.5E-13 7.5E-18 132.0 16.5 114 34-149 1-118 (227)
36 COG3706 PleD Response regulato 99.5 2E-13 4.4E-18 150.1 16.4 118 32-151 131-254 (435)
37 PRK10766 DNA-binding transcrip 99.5 3.4E-13 7.4E-18 131.3 16.3 115 34-150 3-120 (221)
38 PRK11475 DNA-binding transcrip 99.5 1.7E-13 3.7E-18 137.7 13.8 154 45-202 2-166 (207)
39 PRK09935 transcriptional regul 99.5 8.7E-13 1.9E-17 126.3 18.1 164 33-198 3-177 (210)
40 PRK10100 DNA-binding transcrip 99.5 2E-13 4.3E-18 138.0 13.8 167 32-202 9-187 (216)
41 PRK11697 putative two-componen 99.5 4.7E-13 1E-17 133.0 16.1 115 34-150 2-119 (238)
42 CHL00148 orf27 Ycf27; Reviewed 99.5 6.8E-13 1.5E-17 130.2 16.7 117 32-150 5-124 (240)
43 PRK10701 DNA-binding transcrip 99.5 5.9E-13 1.3E-17 132.0 16.3 115 34-150 2-119 (240)
44 PRK15411 rcsA colanic acid cap 99.5 4.6E-13 1E-17 134.0 15.5 159 34-202 1-169 (207)
45 PRK10161 transcriptional regul 99.5 7.4E-13 1.6E-17 129.9 16.3 114 34-149 3-122 (229)
46 PRK13856 two-component respons 99.5 7.3E-13 1.6E-17 132.2 16.2 114 35-150 3-120 (241)
47 PRK14084 two-component respons 99.5 8.3E-13 1.8E-17 132.4 16.6 115 34-150 1-119 (246)
48 PRK13837 two-component VirA-li 99.5 8E-13 1.7E-17 156.2 18.5 146 1-149 643-814 (828)
49 TIGR01387 cztR_silR_copR heavy 99.5 1.6E-12 3.4E-17 125.3 17.0 149 36-186 1-163 (218)
50 PRK09468 ompR osmolarity respo 99.5 1.4E-12 3E-17 129.1 16.3 116 33-150 5-124 (239)
51 PRK09581 pleD response regulat 99.5 3.6E-13 7.8E-18 144.6 12.0 116 31-149 153-274 (457)
52 PRK15479 transcriptional regul 99.4 5E-12 1.1E-16 122.1 18.6 151 34-186 1-164 (221)
53 KOG0519 Sensory transduction h 99.4 4.9E-13 1.1E-17 157.5 13.4 115 32-147 665-784 (786)
54 PRK10710 DNA-binding transcrip 99.4 6.6E-12 1.4E-16 123.3 18.2 149 34-184 11-174 (240)
55 PRK10651 transcriptional regul 99.4 7.6E-12 1.7E-16 119.8 17.8 166 32-199 5-184 (216)
56 PRK13557 histidine kinase; Pro 99.4 3.6E-12 7.9E-17 139.8 17.4 148 1-149 362-535 (540)
57 PRK10403 transcriptional regul 99.4 4.7E-12 1E-16 120.9 15.8 162 33-196 6-179 (215)
58 PRK09390 fixJ response regulat 99.4 2.1E-12 4.5E-17 121.5 13.2 117 32-150 2-122 (202)
59 PRK15369 two component system 99.4 9.8E-12 2.1E-16 117.4 17.7 165 33-199 3-178 (211)
60 TIGR02875 spore_0_A sporulatio 99.4 4.5E-12 9.8E-17 128.9 15.7 115 33-149 2-124 (262)
61 PRK10365 transcriptional regul 99.4 5.7E-12 1.2E-16 137.5 14.7 118 31-150 3-124 (441)
62 COG4567 Response regulator con 99.4 6.1E-12 1.3E-16 120.4 12.1 113 30-145 7-123 (182)
63 PRK12555 chemotaxis-specific m 99.3 1.1E-11 2.4E-16 132.0 15.0 99 34-134 1-106 (337)
64 PRK15115 response regulator Gl 99.3 1.3E-11 2.8E-16 135.4 15.5 115 33-149 5-123 (444)
65 PRK10923 glnG nitrogen regulat 99.3 1.7E-11 3.8E-16 135.4 16.3 115 34-150 4-122 (469)
66 PRK11361 acetoacetate metaboli 99.3 1.5E-11 3.3E-16 135.0 15.7 116 31-148 2-121 (457)
67 PRK13435 response regulator; P 99.3 3.5E-11 7.5E-16 111.0 14.9 115 33-150 5-122 (145)
68 TIGR02915 PEP_resp_reg putativ 99.3 2.4E-11 5.2E-16 133.3 14.9 110 36-149 1-119 (445)
69 COG2201 CheB Chemotaxis respon 99.3 3E-11 6.6E-16 129.8 13.9 101 33-135 1-108 (350)
70 PRK10610 chemotaxis regulatory 99.3 2E-10 4.3E-15 98.4 16.2 116 32-149 4-126 (129)
71 TIGR01818 ntrC nitrogen regula 99.3 4.6E-11 1E-15 131.5 14.9 113 36-150 1-117 (463)
72 PRK09581 pleD response regulat 99.3 1.1E-10 2.4E-15 125.3 16.8 115 34-150 3-123 (457)
73 PRK00742 chemotaxis-specific m 99.2 9.9E-11 2.1E-15 125.4 15.5 101 33-135 3-110 (354)
74 PRK13558 bacterio-opsin activa 99.2 1.2E-10 2.6E-15 133.8 13.9 116 32-149 6-127 (665)
75 PRK09191 two-component respons 99.1 7.1E-10 1.5E-14 111.8 15.1 115 33-149 137-254 (261)
76 PRK13502 transcriptional activ 99.1 2.9E-11 6.3E-16 124.8 3.8 61 221-286 212-272 (282)
77 PRK13503 transcriptional activ 99.1 3.1E-11 6.7E-16 123.8 3.8 61 221-286 207-267 (278)
78 PRK13501 transcriptional activ 99.1 3.3E-11 7.2E-16 125.3 3.8 61 221-286 212-272 (290)
79 PLN03162 golden-2 like transcr 99.1 6.5E-11 1.4E-15 125.4 5.6 63 214-281 232-294 (526)
80 PRK10219 DNA-binding transcrip 99.1 5.6E-11 1.2E-15 106.6 3.9 61 221-286 41-101 (107)
81 PRK13500 transcriptional activ 99.1 5.6E-11 1.2E-15 125.6 3.9 61 221-286 242-302 (312)
82 PRK10572 DNA-binding transcrip 99.1 7.9E-11 1.7E-15 122.2 3.9 61 221-286 219-279 (290)
83 TIGR02297 HpaA 4-hydroxyphenyl 99.1 8.3E-11 1.8E-15 121.3 3.8 61 221-286 222-282 (287)
84 cd00156 REC Signal receiver do 99.0 5.2E-09 1.1E-13 85.0 12.4 108 37-146 1-112 (113)
85 COG3707 AmiR Response regulato 99.0 1.9E-09 4.1E-14 107.1 11.5 116 33-150 5-124 (194)
86 PRK10296 DNA-binding transcrip 99.0 2E-10 4.3E-15 118.5 3.9 61 221-286 208-268 (278)
87 PRK11511 DNA-binding transcrip 99.0 2.9E-10 6.3E-15 105.9 4.0 61 221-286 45-105 (127)
88 COG3279 LytT Response regulato 99.0 3.4E-09 7.4E-14 109.2 11.1 114 34-149 2-119 (244)
89 PF12833 HTH_18: Helix-turn-he 98.9 3.8E-10 8.3E-15 96.0 2.9 61 221-286 15-76 (81)
90 COG2207 AraC AraC-type DNA-bin 98.9 1.1E-09 2.3E-14 98.1 4.0 61 221-286 56-116 (127)
91 PRK10693 response regulator of 98.9 9.3E-09 2E-13 108.6 11.5 86 62-149 2-92 (303)
92 PRK10371 DNA-binding transcrip 98.8 1.9E-09 4E-14 113.9 3.7 61 221-286 227-287 (302)
93 PRK09393 ftrA transcriptional 98.8 2.2E-09 4.8E-14 113.7 3.8 62 220-286 253-314 (322)
94 PRK09978 DNA-binding transcrip 98.8 2E-09 4.3E-14 112.9 3.1 60 221-286 178-237 (274)
95 PRK15121 right oriC-binding tr 98.8 4.4E-09 9.4E-14 110.1 4.0 61 221-286 41-101 (289)
96 PRK09685 DNA-binding transcrip 98.8 3.4E-09 7.5E-14 110.3 3.2 60 221-286 234-295 (302)
97 PRK15044 transcriptional regul 98.7 5.6E-09 1.2E-13 110.2 3.2 61 220-286 227-287 (295)
98 PRK09940 transcriptional regul 98.7 6.4E-09 1.4E-13 108.0 3.4 59 221-286 170-228 (253)
99 PRK15185 transcriptional regul 98.7 8.8E-09 1.9E-13 109.5 3.3 60 221-286 242-301 (309)
100 PRK15340 transcriptional regul 98.7 1.7E-08 3.8E-13 102.5 4.2 62 220-286 144-205 (216)
101 COG4977 Transcriptional regula 98.6 2.2E-08 4.7E-13 107.4 3.9 63 219-286 254-316 (328)
102 smart00342 HTH_ARAC helix_turn 98.6 3.5E-08 7.5E-13 82.2 4.2 61 221-286 21-81 (84)
103 PRK15186 AraC family transcrip 98.6 1.8E-08 4E-13 106.6 3.1 60 221-286 217-276 (291)
104 TIGR01557 myb_SHAQKYF myb-like 98.6 8.6E-08 1.9E-12 78.3 5.7 49 217-265 1-50 (57)
105 PRK15029 arginine decarboxylas 98.5 5.9E-07 1.3E-11 105.7 13.4 111 34-146 1-130 (755)
106 PRK10130 transcriptional regul 98.5 5.6E-08 1.2E-12 105.4 4.5 64 220-288 275-341 (350)
107 PRK15435 bifunctional DNA-bind 98.5 1.3E-07 2.9E-12 102.6 4.6 60 221-286 119-178 (353)
108 PRK10618 phosphotransfer inter 98.3 9.6E-07 2.1E-11 106.2 7.3 85 1-94 640-741 (894)
109 COG2169 Ada Adenosine deaminas 98.0 3.2E-06 7E-11 84.0 3.7 62 219-286 115-176 (187)
110 PF00165 HTH_AraC: Bacterial r 97.9 6.4E-06 1.4E-10 62.5 2.4 32 254-286 7-38 (42)
111 PRK11107 hybrid sensory histid 97.8 0.00018 4E-09 85.4 13.2 141 1-147 486-650 (919)
112 COG3706 PleD Response regulato 97.5 7.4E-05 1.6E-09 83.2 4.7 91 57-149 12-104 (435)
113 smart00448 REC cheY-homologous 97.5 0.00095 2E-08 47.0 8.2 55 34-90 1-55 (55)
114 PF06490 FleQ: Flagellar regul 96.8 0.0088 1.9E-07 54.8 9.3 105 35-146 1-107 (109)
115 cd02071 MM_CoA_mut_B12_BD meth 94.9 0.57 1.2E-05 43.4 12.5 108 35-144 1-121 (122)
116 PRK02261 methylaspartate mutas 94.8 0.68 1.5E-05 44.2 13.2 113 33-147 3-134 (137)
117 TIGR00640 acid_CoA_mut_C methy 94.2 1.4 2.9E-05 42.0 13.7 108 40-149 13-129 (132)
118 cd02067 B12-binding B12 bindin 93.7 0.6 1.3E-05 42.6 9.9 91 40-132 10-109 (119)
119 PRK15435 bifunctional DNA-bind 91.6 0.15 3.3E-06 55.9 3.6 34 253-287 97-130 (353)
120 COG4753 Response regulator con 91.4 0.087 1.9E-06 59.8 1.4 54 228-286 208-269 (475)
121 cd04728 ThiG Thiazole synthase 90.0 1.9 4E-05 45.4 9.5 109 32-149 92-226 (248)
122 PRK10572 DNA-binding transcrip 88.5 0.31 6.7E-06 50.8 2.7 33 254-287 198-230 (290)
123 TIGR01501 MthylAspMutase methy 88.5 8.7 0.00019 36.9 12.2 104 42-147 14-132 (134)
124 PRK00208 thiG thiazole synthas 87.8 3.1 6.7E-05 43.9 9.3 109 32-149 92-226 (250)
125 TIGR03815 CpaE_hom_Actino heli 87.4 1.1 2.4E-05 47.9 6.1 80 59-146 3-85 (322)
126 PF03709 OKR_DC_1_N: Orn/Lys/A 87.1 5.6 0.00012 36.7 9.7 101 46-148 6-113 (115)
127 PRK11511 DNA-binding transcrip 85.8 0.66 1.4E-05 43.3 3.0 33 254-287 24-56 (127)
128 PRK10219 DNA-binding transcrip 85.8 0.9 1.9E-05 40.7 3.7 33 254-287 20-52 (107)
129 COG2169 Ada Adenosine deaminas 85.1 0.99 2.1E-05 45.6 3.9 34 253-287 95-128 (187)
130 cd02070 corrinoid_protein_B12- 84.3 8.6 0.00019 38.7 10.4 97 33-132 82-191 (201)
131 PF02310 B12-binding: B12 bind 84.2 11 0.00024 33.8 10.2 89 41-131 12-110 (121)
132 cd02072 Glm_B12_BD B12 binding 83.1 19 0.0004 34.5 11.4 101 42-144 12-127 (128)
133 PF10087 DUF2325: Uncharacteri 82.7 10 0.00022 33.7 9.0 88 35-122 1-93 (97)
134 PRK09685 DNA-binding transcrip 82.1 1.4 3.1E-05 46.0 3.9 39 247-287 206-244 (302)
135 PF01408 GFO_IDH_MocA: Oxidore 80.6 32 0.0007 30.6 11.7 104 34-149 1-112 (120)
136 PRK00043 thiE thiamine-phospha 80.6 20 0.00043 35.5 11.2 67 62-131 110-187 (212)
137 COG2185 Sbm Methylmalonyl-CoA 80.3 33 0.00072 33.5 12.1 113 32-148 11-138 (143)
138 PRK09393 ftrA transcriptional 79.9 1.3 2.7E-05 47.4 2.6 33 254-287 233-265 (322)
139 PRK01130 N-acetylmannosamine-6 79.7 26 0.00056 35.5 12.0 79 51-132 112-202 (221)
140 cd02069 methionine_synthase_B1 79.2 15 0.00032 37.7 10.0 100 32-133 87-202 (213)
141 PRK13503 transcriptional activ 78.2 1.7 3.7E-05 44.8 2.9 33 254-287 186-218 (278)
142 smart00342 HTH_ARAC helix_turn 77.9 2.1 4.5E-05 35.1 2.8 32 255-287 1-32 (84)
143 PRK15399 lysine decarboxylase 76.6 23 0.00049 42.8 11.9 73 34-110 1-80 (713)
144 COG2207 AraC AraC-type DNA-bin 76.2 3.7 8.1E-05 36.3 4.2 32 254-286 35-66 (127)
145 TIGR02297 HpaA 4-hydroxyphenyl 75.6 2.6 5.6E-05 43.7 3.4 33 254-287 201-233 (287)
146 PRK15340 transcriptional regul 75.4 3.3 7.2E-05 42.8 4.1 34 253-287 123-156 (216)
147 TIGR02370 pyl_corrinoid methyl 74.5 17 0.00038 36.6 8.9 95 34-131 85-192 (197)
148 PRK15320 transcriptional activ 74.0 8.5 0.00019 39.7 6.4 160 35-202 3-196 (251)
149 cd02068 radical_SAM_B12_BD B12 73.1 26 0.00057 32.2 9.1 101 44-146 3-110 (127)
150 PRK13502 transcriptional activ 72.9 3.1 6.6E-05 43.2 3.2 33 255-288 192-224 (282)
151 cd04729 NanE N-acetylmannosami 72.8 37 0.00081 34.3 10.9 69 61-132 128-206 (219)
152 PRK15400 lysine decarboxylase 72.6 27 0.00059 42.2 11.2 73 34-110 1-80 (714)
153 PRK09426 methylmalonyl-CoA mut 71.7 38 0.00082 41.0 12.2 115 33-149 582-709 (714)
154 PRK15121 right oriC-binding tr 71.3 3.2 6.9E-05 43.7 2.9 33 254-287 20-52 (289)
155 cd03820 GT1_amsD_like This fam 70.5 51 0.0011 33.0 11.2 108 33-148 209-318 (348)
156 PRK09922 UDP-D-galactose:(gluc 70.1 31 0.00068 36.9 10.2 68 80-150 258-325 (359)
157 PRK10130 transcriptional regul 69.9 3.9 8.4E-05 44.9 3.3 38 248-287 250-287 (350)
158 PRK13500 transcriptional activ 69.0 4.2 9.2E-05 43.3 3.3 32 255-287 222-253 (312)
159 COG4999 Uncharacterized domain 68.5 25 0.00053 33.7 7.7 105 32-143 10-121 (140)
160 PRK10296 DNA-binding transcrip 67.6 3.6 7.8E-05 42.6 2.3 31 256-287 189-219 (278)
161 PRK10371 DNA-binding transcrip 67.6 6.2 0.00013 42.1 4.1 33 254-287 206-238 (302)
162 COG0512 PabA Anthranilate/para 67.0 8.6 0.00019 39.2 4.7 74 33-110 1-78 (191)
163 PF00534 Glycos_transf_1: Glyc 66.8 90 0.002 29.1 11.5 110 32-150 46-159 (172)
164 PTZ00314 inosine-5'-monophosph 65.4 46 0.001 38.5 10.8 98 32-132 252-373 (495)
165 TIGR03151 enACPred_II putative 65.4 45 0.00097 36.1 10.1 79 51-132 103-190 (307)
166 PF02254 TrkA_N: TrkA-N domain 65.1 61 0.0013 28.7 9.5 91 34-131 22-115 (116)
167 TIGR00007 phosphoribosylformim 64.9 62 0.0013 32.8 10.6 65 65-131 146-217 (230)
168 PRK13501 transcriptional activ 64.7 5.7 0.00012 41.5 3.2 33 254-287 191-223 (290)
169 PF01596 Methyltransf_3: O-met 64.7 23 0.00049 36.2 7.3 84 3-88 36-130 (205)
170 PLN02871 UDP-sulfoquinovose:DA 63.8 80 0.0017 35.4 12.2 107 33-148 290-399 (465)
171 cd04949 GT1_gtfA_like This fam 61.3 48 0.001 35.1 9.5 55 93-149 291-345 (372)
172 PRK10558 alpha-dehydro-beta-de 61.1 72 0.0016 33.7 10.5 97 48-146 9-113 (256)
173 PRK15484 lipopolysaccharide 1, 60.4 1.3E+02 0.0029 32.7 12.9 110 33-149 224-344 (380)
174 cd03823 GT1_ExpE7_like This fa 59.4 1.6E+02 0.0034 29.9 12.5 66 80-148 263-328 (359)
175 CHL00162 thiG thiamin biosynth 59.2 1.7E+02 0.0037 31.5 12.6 102 43-149 124-240 (267)
176 cd04730 NPD_like 2-Nitropropan 58.9 1.1E+02 0.0024 30.8 11.2 68 62-132 108-185 (236)
177 PRK05567 inosine 5'-monophosph 58.7 70 0.0015 36.7 10.7 96 32-131 239-359 (486)
178 TIGR03088 stp2 sugar transfera 58.3 79 0.0017 33.6 10.5 107 33-148 229-337 (374)
179 cd00564 TMP_TenI Thiamine mono 57.7 63 0.0014 31.1 8.8 68 62-132 101-178 (196)
180 PRK11840 bifunctional sulfur c 57.7 1E+02 0.0022 34.0 11.1 112 33-149 167-300 (326)
181 PRK10128 2-keto-3-deoxy-L-rham 57.6 97 0.0021 33.1 10.8 97 48-146 8-112 (267)
182 PF03602 Cons_hypoth95: Conser 57.4 42 0.00091 33.5 7.7 67 34-102 66-138 (183)
183 PLN02274 inosine-5'-monophosph 57.3 61 0.0013 37.6 9.9 97 32-131 259-379 (505)
184 PRK08385 nicotinate-nucleotide 56.7 73 0.0016 34.3 9.8 90 36-130 157-257 (278)
185 TIGR02311 HpaI 2,4-dihydroxyhe 56.0 1.2E+02 0.0025 31.9 11.0 96 49-146 3-106 (249)
186 cd00381 IMPDH IMPDH: The catal 55.9 1.1E+02 0.0024 33.4 11.2 96 32-131 105-225 (325)
187 PRK05458 guanosine 5'-monophos 55.8 1.4E+02 0.0031 32.8 12.0 95 35-132 113-230 (326)
188 TIGR03239 GarL 2-dehydro-3-deo 55.8 1.2E+02 0.0026 31.9 11.1 96 49-146 3-106 (249)
189 cd03819 GT1_WavL_like This fam 55.5 1.7E+02 0.0037 30.2 12.2 109 33-148 216-329 (355)
190 PRK05749 3-deoxy-D-manno-octul 55.3 75 0.0016 34.9 10.0 108 33-148 262-387 (425)
191 cd03813 GT1_like_3 This family 55.2 1E+02 0.0023 34.7 11.3 66 80-149 371-442 (475)
192 cd04726 KGPDC_HPS 3-Keto-L-gul 54.8 1.7E+02 0.0037 28.7 11.5 98 32-132 76-186 (202)
193 PRK05718 keto-hydroxyglutarate 54.7 1.1E+02 0.0024 31.5 10.4 87 51-139 10-101 (212)
194 PRK01911 ppnK inorganic polyph 54.0 72 0.0016 34.4 9.3 102 34-151 1-122 (292)
195 PRK00748 1-(5-phosphoribosyl)- 53.6 52 0.0011 33.3 7.8 63 67-131 149-219 (233)
196 TIGR01037 pyrD_sub1_fam dihydr 53.1 1.4E+02 0.0031 31.6 11.3 55 95-149 223-286 (300)
197 cd03313 enolase Enolase: Enola 52.2 1E+02 0.0022 34.7 10.4 105 40-145 210-348 (408)
198 PRK09140 2-dehydro-3-deoxy-6-p 52.0 94 0.002 31.7 9.3 91 50-142 4-99 (206)
199 PRK06843 inosine 5-monophospha 51.7 1.2E+02 0.0026 34.4 10.8 97 32-131 164-284 (404)
200 PRK14956 DNA polymerase III su 50.7 2.2E+02 0.0048 33.1 12.9 71 79-149 121-195 (484)
201 cd04724 Tryptophan_synthase_al 50.2 1.5E+02 0.0032 30.8 10.6 53 94-146 64-125 (242)
202 PF14097 SpoVAE: Stage V sporu 49.8 1.6E+02 0.0034 29.9 10.0 75 36-110 3-86 (180)
203 cd04962 GT1_like_5 This family 49.6 1.7E+02 0.0037 30.6 11.2 65 80-148 271-335 (371)
204 PF04131 NanE: Putative N-acet 49.6 1.3E+02 0.0028 30.9 9.6 97 32-132 63-173 (192)
205 cd03801 GT1_YqgM_like This fam 49.3 2.5E+02 0.0054 28.0 11.9 75 67-149 267-341 (374)
206 cd05844 GT1_like_7 Glycosyltra 48.9 2.4E+02 0.0052 29.4 12.2 109 33-149 219-336 (367)
207 PRK10669 putative cation:proto 48.7 92 0.002 36.1 9.7 91 33-130 440-533 (558)
208 TIGR01334 modD putative molybd 48.6 55 0.0012 35.2 7.3 66 60-129 192-260 (277)
209 PRK15427 colanic acid biosynth 48.3 2.3E+02 0.005 31.4 12.4 107 34-148 254-369 (406)
210 TIGR00262 trpA tryptophan synt 48.2 2.1E+02 0.0045 30.2 11.5 102 32-133 114-228 (256)
211 COG0626 MetC Cystathionine bet 48.0 88 0.0019 35.3 9.1 122 3-130 68-205 (396)
212 PF03060 NMO: Nitronate monoox 47.1 1.2E+02 0.0026 33.0 9.8 78 52-132 131-219 (330)
213 PF04309 G3P_antiterm: Glycero 46.2 19 0.00041 36.2 3.2 58 67-130 107-167 (175)
214 TIGR01761 thiaz-red thiazoliny 46.0 2.5E+02 0.0054 31.1 12.0 102 32-148 2-113 (343)
215 PF01081 Aldolase: KDPG and KH 45.8 43 0.00094 34.2 5.7 89 51-141 3-96 (196)
216 PRK09978 DNA-binding transcrip 45.8 18 0.00039 38.8 3.1 32 254-287 157-188 (274)
217 PLN02591 tryptophan synthase 45.4 2.1E+02 0.0045 30.3 10.9 96 35-133 109-219 (250)
218 PRK07649 para-aminobenzoate/an 45.4 24 0.00053 35.5 3.8 49 36-86 2-50 (195)
219 PRK06015 keto-hydroxyglutarate 45.1 1.2E+02 0.0025 31.2 8.7 78 61-140 10-90 (201)
220 cd03818 GT1_ExpC_like This fam 45.0 2.2E+02 0.0047 30.9 11.4 76 66-149 291-366 (396)
221 TIGR00734 hisAF_rel hisA/hisF 44.8 99 0.0021 31.8 8.3 65 65-131 142-212 (221)
222 cd01568 QPRTase_NadC Quinolina 44.6 49 0.0011 35.1 6.1 92 35-131 153-254 (269)
223 PLN00191 enolase 44.3 1.5E+02 0.0033 34.1 10.4 81 65-146 296-381 (457)
224 PRK07428 nicotinate-nucleotide 44.2 76 0.0016 34.3 7.5 92 35-130 168-269 (288)
225 COG4977 Transcriptional regula 44.1 26 0.00056 38.6 4.0 33 253-286 234-266 (328)
226 cd04723 HisA_HisF Phosphoribos 43.9 99 0.0021 31.9 8.1 65 65-131 147-217 (233)
227 PRK13587 1-(5-phosphoribosyl)- 43.5 1.1E+02 0.0023 31.9 8.3 64 67-131 151-220 (234)
228 PRK13125 trpA tryptophan synth 43.2 2.1E+02 0.0046 29.6 10.5 86 45-133 117-215 (244)
229 PRK03958 tRNA 2'-O-methylase; 43.2 1.9E+02 0.0042 29.2 9.7 63 35-99 33-97 (176)
230 PRK12704 phosphodiesterase; Pr 42.8 40 0.00087 39.2 5.6 45 105-149 250-297 (520)
231 PRK07896 nicotinate-nucleotide 42.8 89 0.0019 33.9 7.8 68 59-130 202-272 (289)
232 TIGR00736 nifR3_rel_arch TIM-b 42.6 1.8E+02 0.0039 30.4 9.8 96 33-131 111-219 (231)
233 PRK06774 para-aminobenzoate sy 42.3 31 0.00067 34.2 4.0 71 36-110 2-76 (191)
234 KOG1562 Spermidine synthase [A 42.2 72 0.0016 35.0 6.9 64 35-100 147-216 (337)
235 PLN02591 tryptophan synthase 41.7 63 0.0014 34.1 6.4 55 93-147 65-128 (250)
236 KOG3648 Golgi apparatus protei 41.7 24 0.00052 41.8 3.5 13 633-645 280-292 (1179)
237 PRK07259 dihydroorotate dehydr 41.5 2.3E+02 0.0049 30.2 10.6 55 94-148 222-285 (301)
238 COG3010 NanE Putative N-acetyl 41.2 1.7E+02 0.0037 30.6 9.0 111 32-146 97-225 (229)
239 TIGR01182 eda Entner-Doudoroff 41.2 1.7E+02 0.0037 30.0 9.2 79 59-140 12-94 (204)
240 cd01424 MGS_CPS_II Methylglyox 40.4 2.2E+02 0.0047 25.6 8.9 24 39-62 8-31 (110)
241 TIGR00735 hisF imidazoleglycer 40.3 2.3E+02 0.0051 29.4 10.3 76 67-144 158-247 (254)
242 PRK00278 trpC indole-3-glycero 40.3 4.2E+02 0.0092 27.9 12.3 91 37-131 139-239 (260)
243 TIGR02026 BchE magnesium-proto 40.0 2E+02 0.0043 33.2 10.5 105 42-148 21-137 (497)
244 PRK02083 imidazole glycerol ph 39.7 2.4E+02 0.0052 29.2 10.3 75 67-144 156-245 (253)
245 PRK00366 ispG 4-hydroxy-3-meth 39.6 85 0.0018 35.0 7.1 84 65-150 40-126 (360)
246 COG0157 NadC Nicotinate-nucleo 39.5 1.1E+02 0.0023 33.2 7.6 90 35-129 160-259 (280)
247 TIGR00693 thiE thiamine-phosph 39.5 1.5E+02 0.0032 29.1 8.4 68 61-131 101-179 (196)
248 TIGR03449 mycothiol_MshA UDP-N 39.3 3.5E+02 0.0075 29.1 11.8 107 34-148 253-367 (405)
249 TIGR00343 pyridoxal 5'-phospha 39.1 1.8E+02 0.0038 31.7 9.2 57 93-149 184-250 (287)
250 cd03806 GT1_ALG11_like This fa 38.9 3E+02 0.0065 30.6 11.5 107 33-148 273-391 (419)
251 PF13384 HTH_23: Homeodomain-l 38.9 23 0.00049 27.2 2.0 32 247-280 10-41 (50)
252 PRK09940 transcriptional regul 38.5 34 0.00074 36.2 3.8 32 254-287 149-180 (253)
253 cd02065 B12-binding_like B12 b 38.5 1.6E+02 0.0036 26.2 7.9 69 40-110 10-84 (125)
254 cd00331 IGPS Indole-3-glycerol 38.2 4.3E+02 0.0093 26.5 12.1 74 55-131 119-200 (217)
255 PF05690 ThiG: Thiazole biosyn 38.2 1.8E+02 0.004 30.9 8.9 113 32-149 92-226 (247)
256 cd06533 Glyco_transf_WecG_TagA 38.0 1.5E+02 0.0032 29.1 8.0 75 32-110 45-128 (171)
257 PRK05458 guanosine 5'-monophos 37.8 88 0.0019 34.4 6.9 63 67-130 100-166 (326)
258 cd01573 modD_like ModD; Quinol 37.5 1.3E+02 0.0029 32.0 8.1 67 61-131 188-257 (272)
259 TIGR01302 IMP_dehydrog inosine 37.5 2.2E+02 0.0048 32.4 10.3 97 32-132 235-356 (450)
260 cd03804 GT1_wbaZ_like This fam 37.3 2.1E+02 0.0046 30.0 9.6 105 34-149 222-326 (351)
261 PRK06843 inosine 5-monophospha 37.2 1.1E+02 0.0025 34.6 7.9 51 80-130 166-220 (404)
262 PLN02781 Probable caffeoyl-CoA 37.1 1.4E+02 0.003 30.9 7.9 84 3-88 59-153 (234)
263 COG2200 Rtn c-di-GMP phosphodi 36.8 2.7E+02 0.0059 29.0 10.2 110 33-144 121-250 (256)
264 cd05212 NAD_bind_m-THF_DH_Cycl 36.8 1.1E+02 0.0024 29.5 6.7 53 32-91 27-83 (140)
265 PRK11359 cyclic-di-GMP phospho 36.0 2.4E+02 0.0052 33.5 10.7 95 49-145 683-793 (799)
266 PRK06552 keto-hydroxyglutarate 35.9 2.7E+02 0.0059 28.6 9.8 89 51-141 8-103 (213)
267 cd04722 TIM_phosphate_binding 35.5 2.5E+02 0.0055 26.3 9.0 52 80-131 137-198 (200)
268 CHL00200 trpA tryptophan synth 35.4 94 0.002 33.1 6.5 53 94-146 79-140 (263)
269 PF07688 KaiA: KaiA domain; I 35.2 78 0.0017 33.9 5.7 113 35-150 2-120 (283)
270 PF02581 TMP-TENI: Thiamine mo 35.1 2E+02 0.0044 28.2 8.5 67 61-130 100-175 (180)
271 PRK05848 nicotinate-nucleotide 34.8 1.2E+02 0.0026 32.5 7.2 89 36-131 155-256 (273)
272 TIGR01302 IMP_dehydrog inosine 34.8 1.1E+02 0.0024 34.8 7.5 61 67-130 227-291 (450)
273 TIGR00006 S-adenosyl-methyltra 34.7 2.2E+02 0.0048 31.1 9.3 60 30-90 42-103 (305)
274 PF01729 QRPTase_C: Quinolinat 34.5 98 0.0021 30.8 6.1 92 35-130 52-153 (169)
275 cd04731 HisF The cyclase subun 34.3 1.7E+02 0.0037 29.9 8.1 67 63-131 26-99 (243)
276 cd04727 pdxS PdxS is a subunit 34.3 2.1E+02 0.0046 31.0 8.9 86 61-149 117-247 (283)
277 PRK07455 keto-hydroxyglutarate 34.2 3E+02 0.0065 27.6 9.6 82 58-140 15-99 (187)
278 PF04321 RmlD_sub_bind: RmlD s 34.0 79 0.0017 33.3 5.7 54 34-89 1-61 (286)
279 PRK15490 Vi polysaccharide bio 34.0 4.9E+02 0.011 31.1 12.5 104 33-145 429-534 (578)
280 PRK07028 bifunctional hexulose 33.8 5.3E+02 0.011 29.0 12.5 98 50-149 100-212 (430)
281 PF12833 HTH_18: Helix-turn-he 33.8 27 0.00059 29.3 1.8 26 261-287 1-26 (81)
282 TIGR01163 rpe ribulose-phospha 33.5 1.3E+02 0.0029 29.6 7.0 65 65-132 115-193 (210)
283 PLN02274 inosine-5'-monophosph 33.4 1.5E+02 0.0032 34.5 8.2 61 68-131 251-316 (505)
284 PRK07114 keto-hydroxyglutarate 33.2 3.7E+02 0.008 28.0 10.3 88 51-140 10-106 (222)
285 PRK07695 transcriptional regul 33.1 3.2E+02 0.007 27.2 9.7 65 62-129 101-174 (201)
286 PRK12738 kbaY tagatose-bisphos 33.0 1.3E+02 0.0027 32.6 7.1 81 63-150 154-246 (286)
287 PF09936 Methyltrn_RNA_4: SAM- 32.8 3.1E+02 0.0067 28.1 9.2 96 35-135 44-161 (185)
288 PRK08007 para-aminobenzoate sy 32.7 51 0.0011 32.8 3.8 71 36-110 2-76 (187)
289 PRK03659 glutathione-regulated 32.6 1.6E+02 0.0035 34.8 8.5 93 32-131 422-517 (601)
290 TIGR01859 fruc_bis_ald_ fructo 32.5 1.3E+02 0.0029 32.2 7.2 81 63-150 152-244 (282)
291 COG0157 NadC Nicotinate-nucleo 32.4 1.3E+02 0.0028 32.6 6.9 50 97-146 177-229 (280)
292 cd01948 EAL EAL domain. This d 32.4 1.6E+02 0.0035 29.0 7.4 87 49-137 137-239 (240)
293 TIGR00566 trpG_papA glutamine 32.3 61 0.0013 32.2 4.3 71 36-110 2-76 (188)
294 PRK07998 gatY putative fructos 32.2 1.4E+02 0.0031 32.2 7.3 80 63-149 152-242 (283)
295 PRK06096 molybdenum transport 32.2 5.2E+02 0.011 28.0 11.5 125 20-146 63-230 (284)
296 TIGR00262 trpA tryptophan synt 32.2 1.5E+02 0.0032 31.3 7.3 53 94-146 74-136 (256)
297 PRK13111 trpA tryptophan synth 32.1 1.3E+02 0.0028 32.0 6.8 53 94-146 76-138 (258)
298 TIGR01060 eno phosphopyruvate 32.0 2.8E+02 0.0062 31.4 10.0 81 65-146 263-350 (425)
299 COG0742 N6-adenine-specific me 31.9 89 0.0019 31.8 5.4 53 34-87 67-122 (187)
300 PF12840 HTH_20: Helix-turn-he 31.8 49 0.0011 26.7 3.0 34 246-280 14-48 (61)
301 PF01959 DHQS: 3-dehydroquinat 31.8 4E+02 0.0087 29.9 10.7 68 80-148 97-169 (354)
302 PRK04128 1-(5-phosphoribosyl)- 31.7 4E+02 0.0086 27.6 10.3 66 64-131 30-101 (228)
303 PRK02155 ppnK NAD(+)/NADH kina 31.6 2.6E+02 0.0057 30.1 9.2 101 35-151 7-121 (291)
304 PRK14960 DNA polymerase III su 31.2 4.9E+02 0.011 31.8 12.0 72 79-150 118-193 (702)
305 PRK07764 DNA polymerase III su 31.0 5E+02 0.011 32.3 12.5 71 79-149 120-194 (824)
306 TIGR01334 modD putative molybd 31.0 6.1E+02 0.013 27.4 11.8 122 23-146 65-229 (277)
307 cd03802 GT1_AviGT4_like This f 30.9 5.4E+02 0.012 26.3 11.2 73 66-147 234-306 (335)
308 PRK03708 ppnK inorganic polyph 30.9 1.7E+02 0.0036 31.4 7.5 100 34-151 1-114 (277)
309 PRK02290 3-dehydroquinate synt 30.9 1.9E+02 0.0042 32.1 8.1 66 80-147 89-159 (344)
310 TIGR01305 GMP_reduct_1 guanosi 30.7 1.7E+02 0.0037 32.6 7.6 54 79-132 121-178 (343)
311 cd03316 MR_like Mandelate race 30.5 1.6E+02 0.0034 31.9 7.5 75 65-141 201-279 (357)
312 cd02809 alpha_hydroxyacid_oxid 30.5 1.9E+02 0.004 31.0 7.9 62 68-131 133-199 (299)
313 COG2022 ThiG Uncharacterized e 30.4 2.8E+02 0.006 29.6 8.7 112 32-148 99-232 (262)
314 PRK07807 inosine 5-monophospha 30.3 1.1E+02 0.0025 35.2 6.6 64 65-130 227-294 (479)
315 PLN02476 O-methyltransferase 30.3 1.9E+02 0.0041 31.2 7.8 84 3-88 109-203 (278)
316 cd03805 GT1_ALG2_like This fam 29.9 6.7E+02 0.015 26.6 12.0 108 33-149 245-364 (392)
317 PRK13566 anthranilate synthase 29.7 70 0.0015 38.8 5.0 77 30-110 523-602 (720)
318 cd03795 GT1_like_4 This family 29.7 6.3E+02 0.014 25.9 12.5 109 33-149 218-332 (357)
319 PRK06895 putative anthranilate 29.7 66 0.0014 31.9 4.1 32 33-64 1-32 (190)
320 cd04951 GT1_WbdM_like This fam 29.7 3.7E+02 0.0081 27.6 9.8 105 33-148 219-325 (360)
321 TIGR03061 pip_yhgE_Nterm YhgE/ 29.7 1.2E+02 0.0025 29.4 5.7 52 31-85 41-102 (164)
322 cd00429 RPE Ribulose-5-phospha 29.7 1.9E+02 0.0042 28.3 7.3 53 80-132 128-194 (211)
323 cd04732 HisA HisA. Phosphorib 29.6 2.3E+02 0.0049 28.6 8.0 65 65-131 147-218 (234)
324 cd00331 IGPS Indole-3-glycerol 29.3 4.6E+02 0.0099 26.3 10.1 65 82-146 48-117 (217)
325 PRK15185 transcriptional regul 29.2 58 0.0013 35.6 3.8 32 254-287 221-252 (309)
326 PRK07003 DNA polymerase III su 29.1 5.9E+02 0.013 31.7 12.3 71 79-149 119-193 (830)
327 PRK03372 ppnK inorganic polyph 29.1 3.7E+02 0.0081 29.3 9.9 102 34-151 6-130 (306)
328 PF01381 HTH_3: Helix-turn-hel 29.1 45 0.00097 25.9 2.2 30 249-279 3-32 (55)
329 PRK08185 hypothetical protein; 29.0 1.6E+02 0.0035 31.7 7.1 81 63-150 148-242 (283)
330 PF03808 Glyco_tran_WecB: Glyc 29.0 2.2E+02 0.0048 27.9 7.6 75 32-110 47-130 (172)
331 PRK06978 nicotinate-nucleotide 28.9 1.5E+02 0.0033 32.2 6.8 88 36-127 179-272 (294)
332 PRK09016 quinolinate phosphori 28.9 1.3E+02 0.0028 32.8 6.3 92 36-131 182-279 (296)
333 PRK06096 molybdenum transport 28.8 1.4E+02 0.0029 32.4 6.5 68 59-130 192-262 (284)
334 PRK00077 eno enolase; Provisio 28.6 4E+02 0.0087 30.2 10.5 106 40-146 213-349 (425)
335 PRK04885 ppnK inorganic polyph 28.5 1.8E+02 0.004 30.9 7.3 56 80-151 36-95 (265)
336 PRK01033 imidazole glycerol ph 28.5 2.3E+02 0.005 29.7 8.0 65 66-131 154-225 (258)
337 PF01053 Cys_Met_Meta_PP: Cys/ 28.5 1.3E+02 0.0028 33.7 6.5 123 3-130 60-197 (386)
338 PLN02935 Bifunctional NADH kin 28.4 4.4E+02 0.0096 30.9 10.8 56 80-151 263-320 (508)
339 cd03811 GT1_WabH_like This fam 28.4 6E+02 0.013 25.2 11.3 51 94-147 277-327 (353)
340 COG3836 HpcH 2,4-dihydroxyhept 28.3 5.3E+02 0.011 27.6 10.3 94 48-143 7-108 (255)
341 PF00478 IMPDH: IMP dehydrogen 28.1 5.5E+02 0.012 28.7 11.1 99 32-133 119-241 (352)
342 PRK14949 DNA polymerase III su 28.1 7.3E+02 0.016 31.4 13.0 71 79-149 119-193 (944)
343 cd03808 GT1_cap1E_like This fa 28.1 5.3E+02 0.011 25.8 10.4 52 94-148 277-328 (359)
344 COG2265 TrmA SAM-dependent met 28.0 4.3E+02 0.0093 30.2 10.6 99 4-110 285-392 (432)
345 cd04731 HisF The cyclase subun 28.0 2.6E+02 0.0057 28.6 8.2 61 68-131 153-222 (243)
346 PF03328 HpcH_HpaI: HpcH/HpaI 27.8 3.5E+02 0.0077 27.3 9.0 81 64-146 8-106 (221)
347 PRK01185 ppnK inorganic polyph 27.6 2.4E+02 0.0053 30.1 8.1 101 34-151 1-107 (271)
348 PRK03562 glutathione-regulated 27.3 2.2E+02 0.0049 33.8 8.5 92 32-130 422-516 (621)
349 PRK05670 anthranilate synthase 27.2 79 0.0017 31.3 4.1 48 36-85 2-49 (189)
350 cd01572 QPRTase Quinolinate ph 27.2 3.1E+02 0.0066 29.3 8.7 88 35-130 154-252 (268)
351 PRK05742 nicotinate-nucleotide 27.2 3.1E+02 0.0066 29.6 8.7 63 61-131 194-260 (277)
352 PRK10060 RNase II stability mo 27.2 4E+02 0.0086 31.7 10.6 100 43-145 541-656 (663)
353 cd03319 L-Ala-DL-Glu_epimerase 27.1 1.3E+02 0.0028 32.1 6.0 77 65-143 189-269 (316)
354 PRK10415 tRNA-dihydrouridine s 27.0 4E+02 0.0087 28.9 9.8 94 36-131 112-223 (321)
355 PF12844 HTH_19: Helix-turn-he 26.9 54 0.0012 26.3 2.4 33 246-279 3-35 (64)
356 PRK04302 triosephosphate isome 26.8 6.9E+02 0.015 25.4 11.7 110 32-145 84-217 (223)
357 COG1954 GlpP Glycerol-3-phosph 26.8 1.8E+02 0.0039 29.6 6.4 57 67-129 111-170 (181)
358 PF13518 HTH_28: Helix-turn-he 26.6 1E+02 0.0022 23.5 3.8 33 247-281 5-37 (52)
359 TIGR01306 GMP_reduct_2 guanosi 26.6 7.9E+02 0.017 27.1 11.9 95 35-132 110-227 (321)
360 COG0673 MviM Predicted dehydro 26.5 7.7E+02 0.017 25.9 11.9 102 33-146 3-114 (342)
361 PRK14075 pnk inorganic polypho 26.4 4.8E+02 0.01 27.5 9.9 94 34-151 1-96 (256)
362 PHA01976 helix-turn-helix prot 26.3 75 0.0016 25.7 3.2 34 245-279 5-38 (67)
363 PRK00654 glgA glycogen synthas 26.2 5E+02 0.011 29.3 10.7 108 33-148 311-427 (466)
364 PF13443 HTH_26: Cro/C1-type H 26.2 45 0.00097 26.7 1.8 33 246-279 1-33 (63)
365 PRK06543 nicotinate-nucleotide 26.2 4E+02 0.0086 28.9 9.3 92 36-131 162-264 (281)
366 PF02796 HTH_7: Helix-turn-hel 26.1 67 0.0015 24.7 2.7 31 245-277 12-42 (45)
367 PRK00811 spermidine synthase; 26.0 2.9E+02 0.0062 29.4 8.3 57 32-91 99-162 (283)
368 PRK06806 fructose-bisphosphate 26.0 2.6E+02 0.0056 30.1 7.9 68 62-131 151-229 (281)
369 PRK00230 orotidine 5'-phosphat 25.9 2.4E+02 0.0052 29.1 7.5 78 64-144 12-99 (230)
370 cd03812 GT1_CapH_like This fam 25.9 5.3E+02 0.011 26.6 10.2 108 33-150 223-332 (358)
371 PRK13111 trpA tryptophan synth 25.9 4.9E+02 0.011 27.6 9.9 95 36-133 121-229 (258)
372 PRK02649 ppnK inorganic polyph 25.8 2.8E+02 0.0061 30.2 8.3 57 80-152 69-127 (305)
373 CHL00101 trpG anthranilate syn 25.7 80 0.0017 31.4 3.8 48 36-85 2-49 (190)
374 cd04740 DHOD_1B_like Dihydroor 25.7 7.7E+02 0.017 26.0 11.5 54 95-148 220-282 (296)
375 TIGR00095 RNA methyltransferas 25.6 2.3E+02 0.005 28.3 7.1 67 35-101 74-143 (189)
376 TIGR03572 WbuZ glycosyl amidat 25.6 3.2E+02 0.0069 27.8 8.3 68 63-132 29-103 (232)
377 PRK00941 acetyl-CoA decarbonyl 25.6 6.1E+02 0.013 31.4 11.6 118 31-150 235-384 (781)
378 PRK09490 metH B12-dependent me 25.5 3.5E+02 0.0077 35.1 10.1 99 33-133 751-865 (1229)
379 PF13412 HTH_24: Winged helix- 25.3 1.2E+02 0.0027 23.0 4.1 34 246-280 7-41 (48)
380 cd04724 Tryptophan_synthase_al 25.3 5.8E+02 0.013 26.5 10.2 98 33-133 104-216 (242)
381 CHL00200 trpA tryptophan synth 25.3 7.4E+02 0.016 26.4 11.2 99 32-133 118-232 (263)
382 PRK05567 inosine 5'-monophosph 25.2 2E+02 0.0044 33.0 7.5 62 67-130 230-295 (486)
383 cd03807 GT1_WbnK_like This fam 25.2 7.1E+02 0.015 25.0 11.1 64 80-149 269-332 (365)
384 TIGR03365 Bsubt_queE 7-cyano-7 25.2 7E+02 0.015 25.8 10.8 98 35-136 75-187 (238)
385 smart00052 EAL Putative diguan 25.1 2.8E+02 0.0061 27.3 7.7 86 50-137 139-240 (241)
386 TIGR03499 FlhF flagellar biosy 25.1 1.9E+02 0.0042 30.6 6.8 54 33-87 224-280 (282)
387 TIGR00417 speE spermidine synt 25.1 3.3E+02 0.0071 28.6 8.5 55 33-90 96-156 (270)
388 PRK14098 glycogen synthase; Pr 25.0 4.9E+02 0.011 29.9 10.5 110 33-148 336-450 (489)
389 COG4122 Predicted O-methyltran 24.9 1.9E+02 0.0041 30.1 6.5 73 28-101 79-155 (219)
390 PRK07765 para-aminobenzoate sy 24.9 1E+02 0.0023 31.4 4.6 76 34-110 1-80 (214)
391 cd03315 MLE_like Muconate lact 24.8 2.6E+02 0.0056 29.1 7.6 75 65-141 141-219 (265)
392 KOG3040 Predicted sugar phosph 24.8 1.4E+02 0.0031 31.3 5.4 94 34-149 40-137 (262)
393 PRK01130 N-acetylmannosamine-6 24.7 3.8E+02 0.0082 27.0 8.6 58 70-129 81-143 (221)
394 PRK14024 phosphoribosyl isomer 24.7 3.4E+02 0.0074 28.1 8.4 79 65-145 147-241 (241)
395 cd03798 GT1_wlbH_like This fam 24.6 7.2E+02 0.016 24.9 11.0 54 94-150 292-345 (377)
396 PRK01231 ppnK inorganic polyph 24.6 5.2E+02 0.011 27.9 10.0 102 34-151 5-120 (295)
397 PRK08649 inosine 5-monophospha 24.6 7.8E+02 0.017 27.6 11.6 64 65-131 142-214 (368)
398 PLN02335 anthranilate synthase 24.6 83 0.0018 32.3 3.8 76 32-110 17-95 (222)
399 cd02801 DUS_like_FMN Dihydrour 24.6 6.7E+02 0.015 25.0 10.4 89 39-129 105-210 (231)
400 KOG0053 Cystathionine beta-lya 24.6 2.4E+02 0.0052 32.1 7.6 119 4-128 83-216 (409)
401 PRK09195 gatY tagatose-bisphos 24.6 1.9E+02 0.0042 31.2 6.7 80 63-149 154-245 (284)
402 cd04946 GT1_AmsK_like This fam 24.4 5.8E+02 0.012 28.1 10.6 77 66-148 299-376 (407)
403 TIGR00078 nadC nicotinate-nucl 24.4 2.1E+02 0.0046 30.4 6.9 89 35-131 150-249 (265)
404 KOG4175 Tryptophan synthase al 24.3 1.8E+02 0.0039 30.4 6.0 37 105-141 94-139 (268)
405 PRK08072 nicotinate-nucleotide 24.3 3.6E+02 0.0078 29.0 8.6 89 35-131 160-259 (277)
406 PRK05637 anthranilate synthase 24.3 1.3E+02 0.0027 30.8 5.0 49 34-85 2-50 (208)
407 PF01729 QRPTase_C: Quinolinat 24.1 2.2E+02 0.0048 28.3 6.5 52 95-146 67-121 (169)
408 TIGR01858 tag_bisphos_ald clas 23.9 2E+02 0.0044 31.0 6.7 81 63-150 152-244 (282)
409 PF00977 His_biosynth: Histidi 23.8 2.9E+02 0.0063 28.4 7.7 67 64-131 147-219 (229)
410 COG0800 Eda 2-keto-3-deoxy-6-p 23.7 6.8E+02 0.015 26.1 10.1 92 49-142 6-102 (211)
411 PF00478 IMPDH: IMP dehydrogen 23.5 2E+02 0.0044 32.1 6.7 66 65-132 108-177 (352)
412 cd03318 MLE Muconate Lactonizi 23.5 5.3E+02 0.011 28.1 10.0 77 65-143 200-280 (365)
413 PF04131 NanE: Putative N-acet 23.5 2.3E+02 0.005 29.1 6.6 66 57-127 45-114 (192)
414 PRK12737 gatY tagatose-bisphos 23.4 2.2E+02 0.0048 30.7 6.9 80 63-149 154-245 (284)
415 PF00497 SBP_bac_3: Bacterial 23.3 2.5E+02 0.0054 26.7 6.7 52 32-87 109-160 (225)
416 TIGR02149 glgA_Coryne glycogen 23.2 9E+02 0.02 25.5 12.5 76 65-148 270-351 (388)
417 cd02922 FCB2_FMN Flavocytochro 23.1 3.1E+02 0.0066 30.4 8.0 38 95-132 202-241 (344)
418 PRK14959 DNA polymerase III su 23.1 8.3E+02 0.018 29.5 12.0 70 80-149 120-193 (624)
419 PRK05703 flhF flagellar biosyn 23.0 2.1E+02 0.0046 32.5 6.9 55 32-87 250-307 (424)
420 cd00452 KDPG_aldolase KDPG and 23.0 4.6E+02 0.01 25.9 8.7 67 61-132 102-171 (190)
421 PF07638 Sigma70_ECF: ECF sigm 23.0 1.1E+02 0.0023 30.2 4.2 30 245-274 141-170 (185)
422 PRK13789 phosphoribosylamine-- 22.9 7.1E+02 0.015 28.1 11.1 62 32-95 3-84 (426)
423 PRK05096 guanosine 5'-monophos 22.9 2.4E+02 0.0053 31.4 7.1 51 79-129 122-176 (346)
424 PRK06559 nicotinate-nucleotide 22.9 2.8E+02 0.0061 30.2 7.5 88 35-128 169-265 (290)
425 PRK07114 keto-hydroxyglutarate 22.8 4.6E+02 0.01 27.3 8.8 96 35-133 19-140 (222)
426 PRK15044 transcriptional regul 22.8 79 0.0017 34.4 3.4 31 254-286 207-237 (295)
427 PF01564 Spermine_synth: Sperm 22.6 1.3E+02 0.0028 31.5 4.8 61 31-93 98-164 (246)
428 TIGR02082 metH 5-methyltetrahy 22.5 4.4E+02 0.0095 34.1 10.2 100 33-134 732-847 (1178)
429 TIGR01163 rpe ribulose-phospha 22.5 7E+02 0.015 24.4 9.9 51 93-143 43-97 (210)
430 TIGR02095 glgA glycogen/starch 22.5 7.2E+02 0.016 27.8 11.1 66 80-149 366-437 (473)
431 PRK12857 fructose-1,6-bisphosp 22.4 2.4E+02 0.0052 30.5 6.9 80 63-149 154-245 (284)
432 PRK03378 ppnK inorganic polyph 22.4 4.2E+02 0.009 28.6 8.7 101 35-151 7-121 (292)
433 cd03799 GT1_amsK_like This is 22.3 8.5E+02 0.018 24.9 11.3 53 94-149 275-327 (355)
434 PRK00050 16S rRNA m(4)C1402 me 22.3 6.2E+02 0.013 27.6 10.0 62 28-90 39-101 (296)
435 PRK14974 cell division protein 22.2 8.9E+02 0.019 26.8 11.4 54 32-87 167-230 (336)
436 PRK07807 inosine 5-monophospha 22.1 3.5E+02 0.0076 31.3 8.6 97 32-131 238-358 (479)
437 cd00532 MGS-like MGS-like doma 22.1 2.2E+02 0.0048 25.9 5.7 41 67-110 57-103 (112)
438 PLN02898 HMP-P kinase/thiamin- 22.0 3.7E+02 0.008 30.9 8.8 63 62-127 396-467 (502)
439 COG3640 CooC CO dehydrogenase 22.0 1.9E+02 0.0042 30.8 5.8 96 4-102 63-177 (255)
440 PLN02275 transferase, transfer 21.9 8.4E+02 0.018 26.4 11.1 104 33-146 261-370 (371)
441 cd02940 DHPD_FMN Dihydropyrimi 21.9 4.4E+02 0.0095 28.2 8.8 36 95-130 239-279 (299)
442 PRK10742 putative methyltransf 21.9 4E+02 0.0087 28.4 8.3 58 32-92 109-177 (250)
443 PF07015 VirC1: VirC1 protein; 21.9 1.6E+02 0.0036 30.9 5.3 53 32-88 29-92 (231)
444 PTZ00314 inosine-5'-monophosph 21.8 2.2E+02 0.0048 33.0 6.9 52 79-130 253-308 (495)
445 PRK15186 AraC family transcrip 21.7 1.1E+02 0.0025 32.8 4.3 32 254-287 196-227 (291)
446 TIGR00696 wecB_tagA_cpsF bacte 21.6 3.4E+02 0.0074 27.1 7.4 76 31-110 46-129 (177)
447 cd03825 GT1_wcfI_like This fam 21.6 2.4E+02 0.0051 29.2 6.6 73 34-110 1-80 (365)
448 PRK14076 pnk inorganic polypho 21.6 3.6E+02 0.0079 31.8 8.7 57 80-152 349-407 (569)
449 PRK04128 1-(5-phosphoribosyl)- 21.6 3.3E+02 0.0072 28.2 7.5 63 65-131 144-210 (228)
450 COG0159 TrpA Tryptophan syntha 21.5 7.2E+02 0.016 26.8 10.1 98 35-133 125-234 (265)
451 PRK13143 hisH imidazole glycer 21.5 1.8E+02 0.0039 29.2 5.4 44 34-85 1-44 (200)
452 cd04726 KGPDC_HPS 3-Keto-L-gul 21.4 2.5E+02 0.0054 27.6 6.4 80 64-145 10-98 (202)
453 PRK04539 ppnK inorganic polyph 21.4 4.9E+02 0.011 28.2 9.0 56 80-151 69-126 (296)
454 COG2070 Dioxygenases related t 21.3 3.9E+02 0.0085 29.5 8.4 66 60-128 131-209 (336)
455 COG0821 gcpE 1-hydroxy-2-methy 21.3 2.7E+02 0.0059 31.1 7.0 67 80-148 50-121 (361)
456 TIGR00612 ispG_gcpE 1-hydroxy- 21.1 3.2E+02 0.007 30.5 7.5 67 80-148 48-119 (346)
457 cd04729 NanE N-acetylmannosami 21.1 4.6E+02 0.0099 26.5 8.3 61 69-131 84-149 (219)
458 PRK05848 nicotinate-nucleotide 21.0 2.7E+02 0.0058 30.0 6.8 51 96-146 170-223 (273)
459 COG4262 Predicted spermidine s 21.0 1.9E+02 0.0042 32.8 5.8 63 29-93 309-379 (508)
460 TIGR01303 IMP_DH_rel_1 IMP deh 20.8 2.9E+02 0.0063 32.0 7.5 65 64-130 224-292 (475)
461 PRK00748 1-(5-phosphoribosyl)- 20.7 5.2E+02 0.011 26.0 8.7 69 64-133 30-104 (233)
462 cd00093 HTH_XRE Helix-turn-hel 20.7 82 0.0018 22.7 2.2 33 245-278 2-34 (58)
463 TIGR03765 ICE_PFL_4695 integra 20.6 4.2E+02 0.0091 24.8 7.1 68 35-110 26-97 (105)
464 PRK08114 cystathionine beta-ly 20.6 3.5E+02 0.0076 30.4 8.0 122 3-130 67-205 (395)
465 KOG2550 IMP dehydrogenase/GMP 20.5 2.2E+02 0.0048 32.7 6.2 67 61-129 247-317 (503)
466 PRK06559 nicotinate-nucleotide 20.4 2.9E+02 0.0062 30.1 7.0 40 107-146 198-238 (290)
467 PRK14963 DNA polymerase III su 20.4 1.2E+03 0.026 27.2 12.5 71 79-150 116-191 (504)
468 PLN02366 spermidine synthase 20.4 3.7E+02 0.0081 29.2 7.9 59 31-91 113-177 (308)
469 PRK08883 ribulose-phosphate 3- 20.3 3.7E+02 0.0081 27.7 7.6 99 33-131 81-194 (220)
470 PF01726 LexA_DNA_bind: LexA D 20.3 1.1E+02 0.0024 25.7 3.1 44 226-280 7-50 (65)
471 COG0352 ThiE Thiamine monophos 20.2 4.6E+02 0.01 27.1 8.1 66 62-130 110-184 (211)
472 PF13941 MutL: MutL protein 20.2 1.4E+03 0.03 26.6 14.0 119 30-150 73-210 (457)
473 PLN02823 spermine synthase 20.1 1.9E+02 0.0042 31.8 5.7 55 33-90 127-187 (336)
474 PRK08610 fructose-bisphosphate 20.1 3E+02 0.0065 29.8 7.0 81 63-150 155-247 (286)
475 PRK13890 conjugal transfer pro 20.1 93 0.002 29.1 2.9 35 246-281 9-43 (120)
476 PRK11829 biofilm formation reg 20.0 6E+02 0.013 29.7 10.2 94 48-143 543-652 (660)
No 1
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.97 E-value=8.6e-32 Score=295.37 Aligned_cols=116 Identities=28% Similarity=0.464 Sum_probs=104.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC--CCE-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCcc
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRC--LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLP 108 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~--gy~-V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IP 108 (665)
.++||||||++.+|++|+.+++|. +++ |.+|.||.+|++++++.. |||||+||+||+|||++|++.+++. +.+-
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~--pDiviTDI~MP~mdGLdLI~~ike~~p~~~ 78 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQ--PDIVITDINMPGMDGLDLIKAIKEQSPDTE 78 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHhCCCce
Confidence 379999999999999999999986 555 469999999999999987 9999999999999999999999753 4444
Q ss_pred EE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 109 VI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 109 VI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
+| ++++|+|+++|+++|+.|||+||++.++|.+++.++..+.
T Consensus 79 ~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl 123 (475)
T COG4753 79 FIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKL 123 (475)
T ss_pred EEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHH
Confidence 43 8999999999999999999999999999999998887654
No 2
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.79 E-value=1.4e-18 Score=174.51 Aligned_cols=167 Identities=30% Similarity=0.331 Sum_probs=138.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CE-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCccEE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCL-YN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~g-y~-V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir-~~~~IPVI 110 (665)
++|+||||++.+|.+|+.+|.... ++ +.++.+++++++.++... ||+||+|+.||+++|+++++.|+ ..++++|+
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~--pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vv 78 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELK--PDVVLLDLSMPGMDGLEALKQLRARGPDIKVV 78 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhcC--CCEEEEcCCCCCCChHHHHHHHHHHCCCCcEE
Confidence 589999999999999999998874 66 458888999999988776 99999999999999999999997 45677766
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccccccc-----cCCc-ccccc-CCCChhhHHHHH
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN-----SGSL-EETDH-HKRGSDEIEYAS 180 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~~-----~~~l-e~~~~-~~Lt~rEie~Le 180 (665)
.+.+..++.++++.||++|++|..+.++|.++++.+..+.......... .... ..... ..++.||.+++.
T Consensus 79 vlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVL~ 158 (211)
T COG2197 79 VLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIARKLAGLLPSSSAEAPLAELLTPRELEVLR 158 (211)
T ss_pred EEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEeCHHHHHHHHhhcccccccccccCCCCHHHHHHHH
Confidence 6889999999999999999999999999999999998766332221110 0000 11111 368999999999
Q ss_pred hhccCCchhHHHHHhhcccccc
Q 006006 181 SVNEGTEGTFKAQRKRISAKEE 202 (665)
Q Consensus 181 sl~eGse~~lka~~k~Is~k~~ 202 (665)
.+.+|..++.++.+..++.++.
T Consensus 159 lla~G~snkeIA~~L~iS~~TV 180 (211)
T COG2197 159 LLAEGLSNKEIAEELNLSEKTV 180 (211)
T ss_pred HHHCCCCHHHHHHHHCCCHhHH
Confidence 9999999999999999988765
No 3
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.77 E-value=4.7e-18 Score=173.07 Aligned_cols=115 Identities=30% Similarity=0.500 Sum_probs=105.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCccEE-
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVI- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~--~~~IPVI- 110 (665)
++|||||||+.+++.|...|+..||.|..+.++++|++.+... ||+||+|++||+|||+++|++||. ....|||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ---PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC---CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 5899999999999999999999999999999999999999754 999999999999999999999984 3667777
Q ss_pred --ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 111 --TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 111 --a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
+.++.+....++++||+|||+|||++.||...++.++++..
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCc
Confidence 66778888999999999999999999999999999998764
No 4
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.76 E-value=1.7e-17 Score=165.74 Aligned_cols=116 Identities=30% Similarity=0.477 Sum_probs=104.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCcc
Q 006006 34 LRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~-gy~-V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IP 108 (665)
++|||||||+.+.+.-+.+++.. +|. |.+|.+.++|..++++.+ |||||+|+.||+.+|++|+..++.. .++.
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~--pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI 78 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFK--PDLILLDIYMPDGNGIELLPELRSQHYPVDVI 78 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhC--CCEEEEeeccCCCccHHHHHHHHhcCCCCCEE
Confidence 58999999999999999999886 665 569999999999999987 9999999999999999999999743 3455
Q ss_pred EE-ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 109 VI-TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 109 VI-a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
+| +.+|.+.+.+|++.||.|||+|||..+.|.+++.+..+++.
T Consensus 79 ~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~ 122 (224)
T COG4565 79 VITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRH 122 (224)
T ss_pred EEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHH
Confidence 55 78899999999999999999999999999999999877664
No 5
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.76 E-value=4.2e-18 Score=167.34 Aligned_cols=169 Identities=24% Similarity=0.299 Sum_probs=141.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccE
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPV 109 (665)
+...-|.|||||..+|+.+..+|+..||.+..+.++++.|...... .|.++|+|++||+|+|+++..++.. ...+||
T Consensus 2 ~~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~--~pGclllDvrMPg~sGlelq~~L~~~~~~~PV 79 (202)
T COG4566 2 PREPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLD--RPGCLLLDVRMPGMSGLELQDRLAERGIRLPV 79 (202)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccCC--CCCeEEEecCCCCCchHHHHHHHHhcCCCCCE
Confidence 3456799999999999999999999999999999999999986444 4999999999999999999999964 467888
Q ss_pred E---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccccccccCCccccccCCCChhhHHHHHhhccCC
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGT 186 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~~~~~le~~~~~~Lt~rEie~Lesl~eGs 186 (665)
| ++.|.....+|++.||.|||.||++..+|.++++++++.......+.... .........++++|++++..+..|.
T Consensus 80 IfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~~~~~~-~~~~~~l~tLT~RERqVl~~vV~G~ 158 (202)
T COG4566 80 IFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRAEADRQ-AAIRARLATLTPRERQVLDLVVRGL 158 (202)
T ss_pred EEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHhcCHHHHHHHHHHHcCc
Confidence 7 79999999999999999999999999999999999987653322221110 0011234678999999999999999
Q ss_pred chhHHHHHhhcccccc
Q 006006 187 EGTFKAQRKRISAKEE 202 (665)
Q Consensus 187 e~~lka~~k~Is~k~~ 202 (665)
-++.++....|+.++.
T Consensus 159 ~NKqIA~dLgiS~rTV 174 (202)
T COG4566 159 MNKQIAFDLGISERTV 174 (202)
T ss_pred ccHHHHHHcCCchhhH
Confidence 9999999888887654
No 6
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.70 E-value=2.2e-16 Score=183.91 Aligned_cols=148 Identities=23% Similarity=0.372 Sum_probs=125.8
Q ss_pred ChhHHHHHHhcCC-------CCCcceeeeeccCCCC-------------CCCccEEEEEeCCHHHHHHHHHHHHhCCCEE
Q 006006 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQ-------------FPAGLRVLVVDDDITCLRILEQMLRRCLYNV 60 (665)
Q Consensus 1 Lai~~~~V~~mgG-------sg~Gs~f~~~~~~~d~-------------fP~girVLIVDDD~~ire~Lk~lL~~~gy~V 60 (665)
|+|||++|+.||| .|.|++|++.+|.+.. ...+++||||||++..+..++.+|+..++.|
T Consensus 473 L~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~ILivdD~~~~~~~l~~~L~~~g~~v 552 (779)
T PRK11091 473 LAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVEDAFDEDDMPLPALNILLVEDIELNVIVARSVLEKLGNSV 552 (779)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCeEEEEEEEeccccccccccccccccccccccceEEEcCCHHHHHHHHHHHHHcCCEE
Confidence 6899999999999 3899999998877421 1135899999999999999999999999999
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CC-ccEE--ecCchHHHHHHHHcCCCeEEeCCC
Q 006006 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MD-LPVI--TDGRVSAVMRGIRHGACDYLIKPI 134 (665)
Q Consensus 61 ~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~-IPVI--a~sd~e~a~kALe~GA~DYLlKPv 134 (665)
..+.++++|++.+.... ||+||+|+.||+|||++++++|+.. .. .|+| .........++++.|+++||.||+
T Consensus 553 ~~a~~~~eal~~~~~~~--~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ii~~ta~~~~~~~~~~~~G~~~~l~KP~ 630 (779)
T PRK11091 553 DVAMTGKEALEMFDPDE--YDLVLLDIQLPDMTGLDIARELRERYPREDLPPLVALTANVLKDKKEYLDAGMDDVLSKPL 630 (779)
T ss_pred EEECCHHHHHHHhhcCC--CCEEEEcCCCCCCCHHHHHHHHHhccccCCCCcEEEEECCchHhHHHHHHCCCCEEEECCC
Confidence 99999999999998665 9999999999999999999999754 33 3666 333344567889999999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q 006006 135 REEELKNIWQHVVRKR 150 (665)
Q Consensus 135 ~~eEL~~aLq~Vlrk~ 150 (665)
+.++|..++++++...
T Consensus 631 ~~~~L~~~l~~~~~~~ 646 (779)
T PRK11091 631 SVPALTAMIKKFWDTQ 646 (779)
T ss_pred CHHHHHHHHHHHhccc
Confidence 9999999999887543
No 7
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.70 E-value=1.5e-16 Score=175.88 Aligned_cols=116 Identities=41% Similarity=0.618 Sum_probs=108.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE--
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI-- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI-- 110 (665)
.+|||||||+.+|..+...|+..||.|.++.++++|++.+.... ||+||+|+.||+|||++++++++. .+.+|||
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~--~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~ 82 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESP--FDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVM 82 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEE
Confidence 57999999999999999999999999999999999999999875 999999999999999999999964 4788888
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
++.+.+.+.+|++.||.|||.|||+.++|..++++++..+.
T Consensus 83 Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~ 124 (464)
T COG2204 83 TGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRE 124 (464)
T ss_pred eCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999999988654
No 8
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.68 E-value=5e-16 Score=183.24 Aligned_cols=149 Identities=24% Similarity=0.331 Sum_probs=128.3
Q ss_pred ChhHHHHHHhcCC-------CCCcceeeeeccCCCC------------CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEE
Q 006006 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQ------------FPAGLRVLVVDDDITCLRILEQMLRRCLYNVT 61 (665)
Q Consensus 1 Lai~~~~V~~mgG-------sg~Gs~f~~~~~~~d~------------fP~girVLIVDDD~~ire~Lk~lL~~~gy~V~ 61 (665)
|+|||++|+.||| .|.|++|++.+|.... ...+++||||||++..+..++.+|...++.|.
T Consensus 630 L~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~ 709 (914)
T PRK11466 630 LTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGLRLLLIEDNPLTQRITAEMLNTSGAQVV 709 (914)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEccccccccccccccccccCCcceEEEeCCHHHHHHHHHHHHhcCCceE
Confidence 6899999999999 3889999999886321 01357999999999999999999998899999
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE---ecCchHHHHHHHHcCCCeEEeCCCCHH
Q 006006 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREE 137 (665)
Q Consensus 62 tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~e 137 (665)
.+.++.+|++.+.... .||+||+|+.||+|||++++++++. .+.+|+| +..+.....++++.|+++||.||++.+
T Consensus 710 ~a~~~~~al~~~~~~~-~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~ 788 (914)
T PRK11466 710 AVGNAAQALETLQNSE-PFAAALVDFDLPDYDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPRE 788 (914)
T ss_pred EeCCHHHHHHHHHcCC-CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHH
Confidence 9999999999886432 3899999999999999999999975 3677877 455667788899999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 006006 138 ELKNIWQHVVRKR 150 (665)
Q Consensus 138 EL~~aLq~Vlrk~ 150 (665)
+|..++.++++..
T Consensus 789 ~L~~~i~~~~~~~ 801 (914)
T PRK11466 789 VLGQLLAHYLQLQ 801 (914)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999987653
No 9
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.68 E-value=6.8e-16 Score=181.61 Aligned_cols=114 Identities=28% Similarity=0.415 Sum_probs=103.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-----CCc
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-----MDL 107 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-----~~I 107 (665)
+++||||||++..+..++.+|...++.|..+.++.+|++.++... ||+||+|+.||+|||++++++++.. +.+
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~ 767 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQHR--FDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDC 767 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCC
Confidence 468999999999999999999999999999999999999998766 9999999999999999999999752 567
Q ss_pred cEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 108 PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 108 PVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
||| +..+.+...++++.|+++||.||++.++|..++.++++
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 877 56677788899999999999999999999999988765
No 10
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.68 E-value=1e-15 Score=134.12 Aligned_cols=107 Identities=38% Similarity=0.632 Sum_probs=98.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE---
Q 006006 36 VLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI--- 110 (665)
Q Consensus 36 VLIVDDD~~ire~Lk~lL~~~gy-~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI--- 110 (665)
||||||++..++.++++|...++ .|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. +.+|+|
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHP--PDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHST--ESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccC--ceEEEEEeeeccccccccccccccccccccEEEec
Confidence 79999999999999999998899 9999999999999999887 9999999999999999999999754 577877
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHH
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQ 144 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq 144 (665)
...+.....++++.||++||.||++.++|.++++
T Consensus 79 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 79 DEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp SSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 4567788899999999999999999999998874
No 11
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.67 E-value=1.1e-15 Score=181.12 Aligned_cols=147 Identities=27% Similarity=0.365 Sum_probs=128.1
Q ss_pred ChhHHHHHHhcCC-------CCCcceeeeeccCCCCCC------------CccEEEEEeCCHHHHHHHHHHHHhCCCEEE
Q 006006 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQFP------------AGLRVLVVDDDITCLRILEQMLRRCLYNVT 61 (665)
Q Consensus 1 Lai~~~~V~~mgG-------sg~Gs~f~~~~~~~d~fP------------~girVLIVDDD~~ire~Lk~lL~~~gy~V~ 61 (665)
|+|||++|+.||| .|.|++|++.+|+...-+ .+.+||||||++..+..++.+|...++.|.
T Consensus 651 L~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~~~~~~~~~~~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~ 730 (968)
T TIGR02956 651 LAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAEDSATLTVIDLPPQRVLLVEDNEVNQMVAQGFLTRLGHKVT 730 (968)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCccccccccccccccccceEEEcCcHHHHHHHHHHHHHcCCEEE
Confidence 6899999999999 288999999988742111 235899999999999999999999999999
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CC---ccEE---ecCchHHHHHHHHcCCCeEEeCCC
Q 006006 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MD---LPVI---TDGRVSAVMRGIRHGACDYLIKPI 134 (665)
Q Consensus 62 tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~---IPVI---a~sd~e~a~kALe~GA~DYLlKPv 134 (665)
.+.++.+|++.+.... ||+||+|+.||++||+++++.|+.. .. +||| +..+.+...++++.|+++||.||+
T Consensus 731 ~~~~~~~a~~~l~~~~--~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~ 808 (968)
T TIGR02956 731 LAESGQSALECFHQHA--FDLALLDINLPDGDGVTLLQQLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPV 808 (968)
T ss_pred EECCHHHHHHHHHCCC--CCEEEECCCCCCCCHHHHHHHHHhCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCC
Confidence 9999999999998765 9999999999999999999999753 22 7877 456777788999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 006006 135 REEELKNIWQHVVRK 149 (665)
Q Consensus 135 ~~eEL~~aLq~Vlrk 149 (665)
+.++|...+.+++..
T Consensus 809 ~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 809 VEEQLTAMIAVILAG 823 (968)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999988754
No 12
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.66 E-value=3e-15 Score=149.64 Aligned_cols=119 Identities=24% Similarity=0.370 Sum_probs=104.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC-CC-EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCc
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRRC-LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDL 107 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~~-gy-~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~I 107 (665)
|..++||||||++.++..+..+|... ++ .|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. ....
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~--pdlvllD~~mp~~~gle~~~~l~~~~~~~ 79 (225)
T PRK10046 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK--PGLILLDNYLPDGRGINLLHELVQAHYPG 79 (225)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhcCCCC
Confidence 56799999999999999999999864 66 4679999999999998776 999999999999999999999975 3456
Q ss_pred cEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 108 PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 108 PVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
+|| ...+.+++.++++.||++||.||++.++|..+++++..++.
T Consensus 80 ~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 126 (225)
T PRK10046 80 DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 (225)
T ss_pred CEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHH
Confidence 666 56778889999999999999999999999999998866543
No 13
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.66 E-value=2e-15 Score=180.44 Aligned_cols=116 Identities=30% Similarity=0.485 Sum_probs=104.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE-
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI- 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI- 110 (665)
.++||||||++..+..++.+|+..++.|..+.++.+|++.+.+.. ||+||+|+.||+|||+++++.|++. ..+|||
T Consensus 801 ~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~--~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII~ 878 (924)
T PRK10841 801 DMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVIG 878 (924)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 468999999999999999999999999999999999999998776 9999999999999999999999754 568887
Q ss_pred --ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 --TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 --a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
+..+.+...++++.|+++||.||++.++|..++.++.+..
T Consensus 879 lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 879 VTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 4556777889999999999999999999999998876543
No 14
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.65 E-value=3.2e-15 Score=147.63 Aligned_cols=168 Identities=17% Similarity=0.149 Sum_probs=134.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC---CCHHHHHHHHhc-cCC
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPD---MDGFKLLEHIGL-EMD 106 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy--~V~tAsngeEALelLre~k~~PDLVIlDI~MP~---mDGlELLe~Ir~-~~~ 106 (665)
+++||||||++..+..++.+|...++ .+..+.++.++++.+.... ||+||+|+.||+ ++|++++++++. .+.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLD--AHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCC--CCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 47999999999999999999987543 3678999999999998765 999999999999 599999999974 466
Q ss_pred ccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccccccc---cCCccccccCCCChhhHHHHH
Q 006006 107 LPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN---SGSLEETDHHKRGSDEIEYAS 180 (665)
Q Consensus 107 IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~~---~~~le~~~~~~Lt~rEie~Le 180 (665)
+||| ...+.....++++.||++||.||.+.++|..+++.+..+.......... ...........++.+|.+++.
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~evl~ 160 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR 160 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCeecCHHHHHHHHHhccCCCccccCCHHHHHHHH
Confidence 7777 4567778889999999999999999999999999987654322111000 000011112469999999999
Q ss_pred hhccCCchhHHHHHhhcccccc
Q 006006 181 SVNEGTEGTFKAQRKRISAKEE 202 (665)
Q Consensus 181 sl~eGse~~lka~~k~Is~k~~ 202 (665)
.+.+|..+..++.+..++.++.
T Consensus 161 ~~~~G~s~~eIA~~l~iS~~TV 182 (216)
T PRK10840 161 LFAEGFLVTEIAKKLNRSIKTI 182 (216)
T ss_pred HHHCCCCHHHHHHHHCCCHHHH
Confidence 9999999999999988887655
No 15
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.65 E-value=2.1e-15 Score=183.22 Aligned_cols=146 Identities=24% Similarity=0.455 Sum_probs=128.3
Q ss_pred ChhHHHHHHhcCC-------CCCcceeeeeccCCC---------------CCCCccEEEEEeCCHHHHHHHHHHHHhCCC
Q 006006 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPD---------------QFPAGLRVLVVDDDITCLRILEQMLRRCLY 58 (665)
Q Consensus 1 Lai~~~~V~~mgG-------sg~Gs~f~~~~~~~d---------------~fP~girVLIVDDD~~ire~Lk~lL~~~gy 58 (665)
|+|||++|++||| .|.|++|++.+|... ..+..++||||||++..+..++.+|+..++
T Consensus 904 L~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~g~ 983 (1197)
T PRK09959 904 LMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAEQPITLPEKLSILIADDHPTNRLLLKRQLNLLGY 983 (1197)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhcccccccccccccccCceEEEcCCCHHHHHHHHHHHHHcCC
Confidence 6899999999999 378999999987631 122457999999999999999999999999
Q ss_pred EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE---ecCchHHHHHHHHcCCCeEEeCCC
Q 006006 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI---TDGRVSAVMRGIRHGACDYLIKPI 134 (665)
Q Consensus 59 ~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI---a~sd~e~a~kALe~GA~DYLlKPv 134 (665)
.|..+.++.+|++.++... |||||+|+.||+++|+++++.++.. +.+||| +..+.....++++.|+++||.||+
T Consensus 984 ~v~~~~~~~~al~~~~~~~--~dlil~D~~mp~~~g~~~~~~i~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~ 1061 (1197)
T PRK09959 984 DVDEATDGVQALHKVSMQH--YDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPL 1061 (1197)
T ss_pred EEEEECCHHHHHHHhhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCC
Confidence 9999999999999998765 9999999999999999999999754 567877 566777888999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 006006 135 REEELKNIWQHVVR 148 (665)
Q Consensus 135 ~~eEL~~aLq~Vlr 148 (665)
+.++|...++++..
T Consensus 1062 ~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1062 TLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999987754
No 16
>PRK09483 response regulator; Provisional
Probab=99.65 E-value=5.9e-15 Score=142.95 Aligned_cols=165 Identities=19% Similarity=0.226 Sum_probs=126.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~-gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI 110 (665)
++||||||++..+..++.+|... ++.+. .+.++.++++.++... ||+||+|+.+|+++|+++++.++. .+.+|+|
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii 79 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNA--VDVVLMDMNMPGIGGLEATRKILRYTPDVKII 79 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHCCCCeEE
Confidence 69999999999999999999874 77765 7899999999998766 999999999999999999999964 4567776
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccccc------cccCCccccccCCCChhhHHHHHh
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH------ENSGSLEETDHHKRGSDEIEYASS 181 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~------~~~~~le~~~~~~Lt~rEie~Les 181 (665)
...+.....+++..||++|+.||++.++|..+++.+.++........ .............++.+|.+++..
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~~ 159 (217)
T PRK09483 80 MLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMALSQIEPATENPFASLSERELQIMLM 159 (217)
T ss_pred EEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHhhcccCCCccccccCHHHHHHHHH
Confidence 45667778899999999999999999999999999877643221110 000011112234578888888888
Q ss_pred hccCCchhHHHHHhhcccc
Q 006006 182 VNEGTEGTFKAQRKRISAK 200 (665)
Q Consensus 182 l~eGse~~lka~~k~Is~k 200 (665)
+.+|..+..++....++.+
T Consensus 160 ~~~G~~~~~Ia~~l~is~~ 178 (217)
T PRK09483 160 ITKGQKVNEISEQLNLSPK 178 (217)
T ss_pred HHCCCCHHHHHHHhCCCHH
Confidence 8888777666665555443
No 17
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.64 E-value=3.1e-15 Score=175.84 Aligned_cols=115 Identities=30% Similarity=0.505 Sum_probs=104.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCccE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~---~~~IPV 109 (665)
.++||||||++..+..++.+|.+.++.|..+.++.+|++.+.... ||+||+|+.||+|||+++++.|+. ...+||
T Consensus 667 ~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~~--~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pi 744 (919)
T PRK11107 667 PLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQRP--FDLILMDIQMPGMDGIRACELIRQLPHNQNTPI 744 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCE
Confidence 468999999999999999999999999999999999999998776 999999999999999999999975 356787
Q ss_pred E---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
| +..+.+...++++.|+++||.||++.++|..++.++...
T Consensus 745 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 745 IAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 7 567788889999999999999999999999999887654
No 18
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.59 E-value=4.5e-14 Score=126.59 Aligned_cols=116 Identities=38% Similarity=0.575 Sum_probs=97.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHH-HHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAA-VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPV 109 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsnge-EALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPV 109 (665)
.+.+||||||++..+..++.+|...++.|..+.++. +|+++++... .||+|++|+.||++||++++++++.. ..+|+
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~G~~~~~~l~~~~~~~pv 82 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMDGIELLRRLRARGPNIPV 82 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCE
Confidence 457999999999999999999999999999999996 9999998762 29999999999999999999999865 55665
Q ss_pred E---ecCchHHHHHHHHcCCCeEEeCCCCHHH-HHHHHHHHHH
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLIKPIREEE-LKNIWQHVVR 148 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLlKPv~~eE-L~~aLq~Vlr 148 (665)
| ++.+.....++++.|+++|+.||+...+ |...+.+.+.
T Consensus 83 v~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 83 ILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred EEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 5 3444444677899999999999977666 7777775543
No 19
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.58 E-value=8e-14 Score=134.67 Aligned_cols=150 Identities=20% Similarity=0.305 Sum_probs=119.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE--
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI-- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI-- 110 (665)
|+||||||++..+..+..+|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|+|
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~l 78 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAP--YDAVILDLTLPGMDGRDILREWREKGQREPVLIL 78 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999999988999999999999999887655 9999999999999999999999754 567777
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccccc--------cc--cCCccccccCCCChhhHHHH
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH--------EN--SGSLEETDHHKRGSDEIEYA 179 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~--------~~--~~~le~~~~~~Lt~rEie~L 179 (665)
...+.+...++++.||++|+.||++.++|...++.+++......... .. ...........++.+|.+++
T Consensus 79 t~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il 158 (219)
T PRK10336 79 TARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALL 158 (219)
T ss_pred ECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhccccCCCCceeECCEEEEcccCEEEECCEEEecCHHHHHHH
Confidence 45667778899999999999999999999999998876532111000 00 00001112245899999999
Q ss_pred HhhccC
Q 006006 180 SSVNEG 185 (665)
Q Consensus 180 esl~eG 185 (665)
..+..+
T Consensus 159 ~~l~~~ 164 (219)
T PRK10336 159 ELLMRN 164 (219)
T ss_pred HHHHhC
Confidence 988876
No 20
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.58 E-value=1.2e-14 Score=154.59 Aligned_cols=118 Identities=36% Similarity=0.480 Sum_probs=106.7
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-c---C
Q 006006 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-E---M 105 (665)
Q Consensus 30 fP~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~---~ 105 (665)
-...++||+|||++..+..++.+|+..+|.|.+|.+|++|+++...++ ||+||+|++||+|||+++|.+|+. . .
T Consensus 11 ~~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~--~dlvllD~~mp~mdg~ev~~~lk~~~p~t~ 88 (360)
T COG3437 11 PDEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP--PDLVLLDVRMPEMDGAEVLNKLKAMSPSTR 88 (360)
T ss_pred CcccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccC--CceEEeeccCCCccHHHHHHHHHhcCCccc
Confidence 345689999999999999999999999999999999999999999887 999999999999999999999975 3 4
Q ss_pred CccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 106 DLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 106 ~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
.+||| ++.|.+...+|+..||+|||.||+++.+|...+...+..
T Consensus 89 ~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~ 135 (360)
T COG3437 89 RIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQL 135 (360)
T ss_pred ccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 68887 789999999999999999999999999999888644433
No 21
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.57 E-value=8.2e-14 Score=133.72 Aligned_cols=160 Identities=14% Similarity=0.170 Sum_probs=124.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE-
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI- 110 (665)
|+|+|+||++..+..+...|+..++.+. .+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +..|+|
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 78 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 78 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEE
Confidence 6899999999999999999988889886 7999999999998765 9999999999999999999999753 456666
Q ss_pred --ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhcccccc---ccCCccccccCCCChhhHHHHHhhccC
Q 006006 111 --TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE---NSGSLEETDHHKRGSDEIEYASSVNEG 185 (665)
Q Consensus 111 --a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~---~~~~le~~~~~~Lt~rEie~Lesl~eG 185 (665)
...+.....++++.||++|+.||++.++|..+++.++++......... ............++.+|.+++..+.+|
T Consensus 79 ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~E~~vl~~l~~g 158 (204)
T PRK09958 79 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDG 158 (204)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCCcccCHHHHHHHHhccCCCcccccCCHHHHHHHHHHHcC
Confidence 456777888999999999999999999999999998765322111100 000011112245899999999999988
Q ss_pred CchhHHHHHh
Q 006006 186 TEGTFKAQRK 195 (665)
Q Consensus 186 se~~lka~~k 195 (665)
......+...
T Consensus 159 ~~~~~I~~~l 168 (204)
T PRK09958 159 KDNNDIAEKM 168 (204)
T ss_pred CCHHHHHHHh
Confidence 7655554443
No 22
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.57 E-value=2.1e-13 Score=137.35 Aligned_cols=115 Identities=23% Similarity=0.362 Sum_probs=98.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~-gy~-V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI 110 (665)
++||||||++.++..++.+|... ++. +..+.++.++++.+......||+||+|+.||+++|+++++.++.. +.+|+|
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI 81 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVI 81 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCEE
Confidence 68999999999999999999864 565 458899999999886422349999999999999999999999753 567776
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
+..+...+.++++.||++||.||++.++|..++.++..
T Consensus 82 ~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~ 122 (239)
T PRK10430 82 VISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 (239)
T ss_pred EEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 56778888899999999999999999999999987544
No 23
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.57 E-value=1.2e-13 Score=133.42 Aligned_cols=115 Identities=30% Similarity=0.494 Sum_probs=103.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE--
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI-- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI-- 110 (665)
|+||||||++..+..+..+|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|+|
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGH--YSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999999988999999999999999988765 9999999999999999999999754 567777
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+.+...++++.||++|+.||++.++|...++.++++.
T Consensus 79 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 79 TARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 4567788889999999999999999999999999887654
No 24
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.56 E-value=7.8e-14 Score=133.03 Aligned_cols=157 Identities=20% Similarity=0.231 Sum_probs=121.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE-
Q 006006 34 LRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~-gy~-V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI- 110 (665)
++||||||++..+..++.+|... ++. +..+.++.++++.+.... ||+||+|+.||+++|+++++.++. ..|+|
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~--~~~vi~ 77 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRG--VQVCICDISMPDISGLELLSQLPK--GMATIM 77 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHcc--CCCEEE
Confidence 68999999999999999999754 454 568999999999997665 999999999999999999999964 45655
Q ss_pred --ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccccccccCCccccccCCCChhhHHHHHhhccCCch
Q 006006 111 --TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEG 188 (665)
Q Consensus 111 --a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~~~~~le~~~~~~Lt~rEie~Lesl~eGse~ 188 (665)
...+.+...++++.||++|+.||++.++|..+++.++++.......... .........++.+|.+++..+.+|...
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~Lt~~E~~il~~l~~g~~~ 155 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAI--KLASGRQDPLTKRERQVAEKLAQGMAV 155 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHH--HHHhccccCCCHHHHHHHHHHHCCCCH
Confidence 4566778889999999999999999999999999988753221111100 000112246889999999999988766
Q ss_pred hHHHHHhh
Q 006006 189 TFKAQRKR 196 (665)
Q Consensus 189 ~lka~~k~ 196 (665)
...+....
T Consensus 156 ~~Ia~~l~ 163 (196)
T PRK10360 156 KEIAAELG 163 (196)
T ss_pred HHHHHHhC
Confidence 66655543
No 25
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.56 E-value=1e-13 Score=135.30 Aligned_cols=115 Identities=27% Similarity=0.368 Sum_probs=104.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI--- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI--- 110 (665)
++||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt 79 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLS 79 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 58999999999999999999988999999999999999887665 9999999999999999999999877778877
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+.+...++++.||++||.||++.++|...++.++++.
T Consensus 80 ~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 4567778889999999999999999999999999887653
No 26
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.55 E-value=1.5e-13 Score=133.41 Aligned_cols=151 Identities=22% Similarity=0.350 Sum_probs=119.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI--- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI--- 110 (665)
|+||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ii~ls 78 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD--YALIILDIMLPGMDGWQILQTLRTAKQTPVICLT 78 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 58999999999999999999988999999999999999987665 9999999999999999999999876677877
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhcccccccc---------CCccccccCCCChhhHHHHHh
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENS---------GSLEETDHHKRGSDEIEYASS 181 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~~~---------~~le~~~~~~Lt~rEie~Les 181 (665)
...+.+...++++.||++|+.||++.++|...++.++++........... ..........++.+|.+++..
T Consensus 79 ~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il~~ 158 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWL 158 (223)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccccCcCCeEEECCEEEEcCCCEEEECCEEEeCCHHHHHHHHH
Confidence 45677788899999999999999999999999998876542211110000 000112233578888888887
Q ss_pred hccCC
Q 006006 182 VNEGT 186 (665)
Q Consensus 182 l~eGs 186 (665)
+....
T Consensus 159 l~~~~ 163 (223)
T PRK11517 159 LASRA 163 (223)
T ss_pred HHhCC
Confidence 76653
No 27
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.54 E-value=2e-13 Score=133.34 Aligned_cols=152 Identities=25% Similarity=0.383 Sum_probs=118.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI--- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI--- 110 (665)
.+||||||++..+..+...|...++.+..+.++.++++.+.. . ||+||+|+.||+++|+++++.++....+|+|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~--~d~vl~d~~~~~~~g~~~~~~l~~~~~~~ii~lt 78 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-S--IDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLT 78 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc-C--CCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEE
Confidence 489999999999999999999889999999999999998863 4 9999999999999999999999865557777
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhcccccc--------ccCCc----------cccccCCCC
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE--------NSGSL----------EETDHHKRG 172 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~--------~~~~l----------e~~~~~~Lt 172 (665)
...+.....++++.||++||.||++.++|...++.++++......... ..... .......++
T Consensus 79 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt 158 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALSLNPGRQEASFDGQTLELT 158 (232)
T ss_pred CCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhccccccccccccCCCceEEECCEEEecCCCEEEECCEEecCC
Confidence 456667788999999999999999999999999988876432111000 00000 001123578
Q ss_pred hhhHHHHHhhccCCch
Q 006006 173 SDEIEYASSVNEGTEG 188 (665)
Q Consensus 173 ~rEie~Lesl~eGse~ 188 (665)
.+|.+++..+.++...
T Consensus 159 ~~E~~~l~~l~~~~~~ 174 (232)
T PRK10955 159 GTEFTLLYLLAQHLGQ 174 (232)
T ss_pred HHHHHHHHHHHhCCCc
Confidence 8888888887776543
No 28
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.54 E-value=2e-13 Score=131.89 Aligned_cols=150 Identities=24% Similarity=0.388 Sum_probs=118.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCccEE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IPVI 110 (665)
++||||||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|+|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii 80 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERG--PDLILLDWMLPGTSGIELCRRLRRRPETRAIPII 80 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcC--CCEEEEECCCCCCcHHHHHHHHHccccCCCCCEE
Confidence 68999999999999999999988999999999999999998766 9999999999999999999999753 467776
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhcccccc-ccCC----------ccccccCCCChhhH
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE-NSGS----------LEETDHHKRGSDEI 176 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~-~~~~----------le~~~~~~Lt~rEi 176 (665)
...+.....++++.||++|+.||++.++|...++.++++......... .... ........++.+|.
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~ 160 (226)
T TIGR02154 81 MLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRIRPQLSDEVIEVGDLSLDPVAHRVFRGGQPLSLGPTEF 160 (226)
T ss_pred EEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcccccccccCceEECCEEEEcCccEEEECCEEEEcCHHHH
Confidence 456777888999999999999999999999999988776422111000 0000 00111235888888
Q ss_pred HHHHhhccC
Q 006006 177 EYASSVNEG 185 (665)
Q Consensus 177 e~Lesl~eG 185 (665)
+++..+.++
T Consensus 161 ~il~~l~~~ 169 (226)
T TIGR02154 161 RLLHFFMTH 169 (226)
T ss_pred HHHHHHHhC
Confidence 888777664
No 29
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.54 E-value=2e-14 Score=149.22 Aligned_cols=115 Identities=28% Similarity=0.464 Sum_probs=105.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE-e
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI-T 111 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI-a 111 (665)
++|+|||||..+...|..+|.+.+..+.+|+...+|++.++..+ ||||++||.||+|+|+|++++++.. +.+||| .
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~k--pDLifldI~mp~~ngiefaeQvr~i~~~v~iifI 78 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFK--PDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFI 78 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcC--CCEEEEEeecCCccHHHHHHHHHHhhccCcEEEE
Confidence 58999999999999999999999988999999999999999988 9999999999999999999999754 668888 6
Q ss_pred cCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 112 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 112 ~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
.+..+++..++...+.|||.||++++.|.+++.++.+..
T Consensus 79 ssh~eya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~v 117 (361)
T COG3947 79 SSHAEYADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRV 117 (361)
T ss_pred ecchhhhhhhcccchHhhccCCCCHHHHHHHHHHHhccc
Confidence 677888899999999999999999999999999887543
No 30
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.53 E-value=2e-13 Score=133.31 Aligned_cols=115 Identities=28% Similarity=0.395 Sum_probs=104.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE--
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI-- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI-- 110 (665)
|+||||||++..+..+...|...++.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+|+|
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~--~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHL--PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999999999999999999999998766 9999999999999999999999753 578877
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+.+...++++.||++||.||++.++|...++.++++.
T Consensus 79 s~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred EcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 5667778889999999999999999999999999887653
No 31
>PRK11173 two-component response regulator; Provisional
Probab=99.53 E-value=1.9e-13 Score=135.47 Aligned_cols=115 Identities=21% Similarity=0.408 Sum_probs=104.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI--- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI--- 110 (665)
.+||||||++..+..+...|+..++.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++....+|+|
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~pii~lt 81 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEND--INLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 58999999999999999999988999999999999999998765 9999999999999999999999876677877
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+.....++++.||++||.||++.++|...++.++++.
T Consensus 82 ~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 4566667788999999999999999999999998887764
No 32
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.52 E-value=5.3e-13 Score=129.46 Aligned_cols=150 Identities=23% Similarity=0.270 Sum_probs=119.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE--
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI-- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI-- 110 (665)
++||||||++..++.+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|+|
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 81 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQP--PDLVILDVGLPDISGFELCRQLLAFHPALPVIFL 81 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 68999999999999999999988999999999999999887665 9999999999999999999999754 667877
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccccc--cccCCc----------cccccCCCChhhHH
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH--ENSGSL----------EETDHHKRGSDEIE 177 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~--~~~~~l----------e~~~~~~Lt~rEie 177 (665)
...+.....++++.||++||.||++.++|...++.++++........ ...... .......++.+|.+
T Consensus 82 s~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~ 161 (228)
T PRK11083 82 TARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRVKKFAAPSPVIRIGHFELDEPAARISYFGTPLTLTRYEFL 161 (228)
T ss_pred EcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCccccccCCCceeEECCEEEecCccEEEECCEEeecCHHHHH
Confidence 45566777889999999999999999999999998876543211000 000000 01122458899999
Q ss_pred HHHhhccC
Q 006006 178 YASSVNEG 185 (665)
Q Consensus 178 ~Lesl~eG 185 (665)
++..+.++
T Consensus 162 il~~l~~~ 169 (228)
T PRK11083 162 LLKTLLLS 169 (228)
T ss_pred HHHHHHhC
Confidence 99888775
No 33
>PLN03029 type-a response regulator protein; Provisional
Probab=99.52 E-value=2.2e-13 Score=137.56 Aligned_cols=119 Identities=27% Similarity=0.550 Sum_probs=103.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcC------------------CCceEEEEeCCCCCCC
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERK------------------GCFDVVLSDVHMPDMD 93 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k------------------~~PDLVIlDI~MP~mD 93 (665)
..++||||||++..+..+..+|.+.+|.|.++.++.+|++.+.... ..+||||+|+.||+++
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 4589999999999999999999999999999999999999986542 1267999999999999
Q ss_pred HHHHHHHHhcc---CCccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 94 GFKLLEHIGLE---MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 94 GlELLe~Ir~~---~~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
|+++++.|+.. ..+||| ...+.....++++.||++||.||++..+|.+++.++++.+
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 99999999754 467777 4566777889999999999999999999988888776554
No 34
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.52 E-value=7.9e-13 Score=129.25 Aligned_cols=149 Identities=23% Similarity=0.306 Sum_probs=118.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCccEE-
Q 006006 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVI- 110 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~--mDGlELLe~Ir~~-~~IPVI- 110 (665)
+||||||++..+..+...|+..++.+..+.++.+++..+.... ||+||+|+.||+ .+|+++++.++.. +.+|+|
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRL--PDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCC--CCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 6999999999999999999988999999999999999988766 999999999998 5899999999754 567777
Q ss_pred --ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccc-----cccccCCc----------cccccCCCCh
Q 006006 111 --TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENK-----EHENSGSL----------EETDHHKRGS 173 (665)
Q Consensus 111 --a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k-----~~~~~~~l----------e~~~~~~Lt~ 173 (665)
...+.+...++++.||++|+.||++.++|...++.++++...... ........ .......++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 159 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRAEALQKPQKQDDLITRGPLTLDSDRMTVFWQDQPIDLTV 159 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhhccccccccceEEECCEEEEcccCEEEECCEEecCCH
Confidence 456777888999999999999999999999999998876432110 00000000 0112246899
Q ss_pred hhHHHHHhhccC
Q 006006 174 DEIEYASSVNEG 185 (665)
Q Consensus 174 rEie~Lesl~eG 185 (665)
+|.+++..+...
T Consensus 160 ~E~~il~~l~~~ 171 (227)
T TIGR03787 160 TEFWMVHALAKH 171 (227)
T ss_pred HHHHHHHHHHhC
Confidence 999999888763
No 35
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.52 E-value=3.5e-13 Score=132.05 Aligned_cols=114 Identities=21% Similarity=0.462 Sum_probs=102.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE--
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI-- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI-- 110 (665)
|+||||||++..+..+...|...++.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|+|
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGD--YDLIILDIMLPDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999988999999999999999887665 9999999999999999999999754 567877
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
...+.+...++++.||++||.||++.++|...++.++++
T Consensus 79 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 79 TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 456778888999999999999999999999999887754
No 36
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.52 E-value=2e-13 Score=150.11 Aligned_cols=118 Identities=35% Similarity=0.501 Sum_probs=107.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCcc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IP 108 (665)
...+||||||+...++.++++|...++.+..+.++.+|+..+.+.+ ||+||+|+.||++||+++|.++|.. ..+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~--~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELP--PDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcCC--CcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 6689999999999999999999999999999999999999999876 9999999999999999999999743 5788
Q ss_pred EE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 109 VI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 109 VI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
|| ..++.....+|++.||.|||.||+...+|...+++.++...
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~ 254 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKR 254 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhh
Confidence 88 56777888999999999999999999999988888777654
No 37
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.51 E-value=3.4e-13 Score=131.27 Aligned_cols=115 Identities=23% Similarity=0.375 Sum_probs=104.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI--- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI--- 110 (665)
++||||||++..+..+...|...++.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++....+|+|
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l~ 80 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQH--VDLILLDINLPGEDGLMLTRELRSRSTVGIILVT 80 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEEE
Confidence 68999999999999999999988999999999999999988665 9999999999999999999999876677877
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+.....++++.||+|||.||++.++|...++.++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 81 GRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred CCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 4567777889999999999999999999999998887653
No 38
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.51 E-value=1.7e-13 Score=137.68 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhC---CCEEEEECCHHHHHHHHHHcCCCceEEE---EeCCCCCCCHHHHHHHHhc-cCCccEE---ecCc
Q 006006 45 CLRILEQMLRRC---LYNVTTCSQAAVALDILRERKGCFDVVL---SDVHMPDMDGFKLLEHIGL-EMDLPVI---TDGR 114 (665)
Q Consensus 45 ire~Lk~lL~~~---gy~V~tAsngeEALelLre~k~~PDLVI---lDI~MP~mDGlELLe~Ir~-~~~IPVI---a~sd 114 (665)
.|.+++.+|... ++.|..+.+++++++.++... ||+|| +|+.||++||++++++|+. .+.++|| ++++
T Consensus 2 ~r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~~--pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~ 79 (207)
T PRK11475 2 SSIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRIS--FSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDI 79 (207)
T ss_pred chHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccCC--CCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCC
Confidence 367889999753 566779999999999987665 99998 6889999999999999964 5778877 3455
Q ss_pred hHHHHHHH-HcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccccccccCCccccccCCCChhhHHHHHhhccCCchhHHHH
Q 006006 115 VSAVMRGI-RHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQ 193 (665)
Q Consensus 115 ~e~a~kAL-e~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~~~~~le~~~~~~Lt~rEie~Lesl~eGse~~lka~ 193 (665)
...+.+++ +.||.+||.||.+.++|.++|+.++++............ .......++.+|++++..+.+|..+..++.
T Consensus 80 ~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~~~~~~~~~~--~~~~~~~LT~RE~eVL~ll~~G~snkeIA~ 157 (207)
T PRK11475 80 EARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQATDRLNNQW--YINQSRMLSPTEREILRFMSRGYSMPQIAE 157 (207)
T ss_pred HHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCcccCHHHHHHh--hccCcCCCCHHHHHHHHHHHCCCCHHHHHH
Confidence 55566665 799999999999999999999999887543322111100 001134699999999999999999999999
Q ss_pred Hhhcccccc
Q 006006 194 RKRISAKEE 202 (665)
Q Consensus 194 ~k~Is~k~~ 202 (665)
+..++.++.
T Consensus 158 ~L~iS~~TV 166 (207)
T PRK11475 158 QLERNIKTI 166 (207)
T ss_pred HHCCCHHHH
Confidence 999887665
No 39
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.51 E-value=8.7e-13 Score=126.34 Aligned_cols=164 Identities=18% Similarity=0.258 Sum_probs=125.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~-gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPV 109 (665)
..+||||||++..+..++..|... ++.+. .+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|+
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~l~~~~~~~~i 80 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRP--VDLIIMDIDLPGTDGFTFLKRIKQIQSTVKV 80 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 468999999999999999999875 57764 7889999999887665 999999999999999999999975 356777
Q ss_pred E---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccccc-----cccCCccccccCCCChhhHHHHHh
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH-----ENSGSLEETDHHKRGSDEIEYASS 181 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~-----~~~~~le~~~~~~Lt~rEie~Les 181 (665)
| ...+.....++++.||++|+.||++.++|..+++.++.+........ .............++.+|.+++..
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~re~~vl~~ 160 (210)
T PRK09935 81 LFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTDTVLSNREVTILRY 160 (210)
T ss_pred EEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCCceeCHHHHHHHHhcccccCccccccCCHHHHHHHHH
Confidence 6 45666778899999999999999999999999998876542211100 000000111234578999999999
Q ss_pred hccCCchhHHHHHhhcc
Q 006006 182 VNEGTEGTFKAQRKRIS 198 (665)
Q Consensus 182 l~eGse~~lka~~k~Is 198 (665)
+.+|..+...+....+.
T Consensus 161 l~~g~s~~eIa~~l~~s 177 (210)
T PRK09935 161 LVSGLSNKEIADQLLLS 177 (210)
T ss_pred HHcCCCHHHHHHHhCCC
Confidence 88887776666665543
No 40
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.50 E-value=2e-13 Score=137.97 Aligned_cols=167 Identities=16% Similarity=0.124 Sum_probs=124.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHH-HHHhc-cCCccE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLL-EHIGL-EMDLPV 109 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELL-e~Ir~-~~~IPV 109 (665)
...+|++|||+|+.+.+|+.+|+.....+..+.++.++++.+. + |||||+|+.||+++|++++ +.++. .+.++|
T Consensus 9 ~~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~~--~--~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~v 84 (216)
T PRK10100 9 HGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDIS--S--GSIILLDMMEADKKLIHYWQDTLSRKNNNIKI 84 (216)
T ss_pred cCceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccCC--C--CCEEEEECCCCCccHHHHHHHHHHHhCCCCcE
Confidence 3467999999999999999999864444567889999998753 3 8999999999999999997 55664 466777
Q ss_pred E-ecCchHHHHHHHHc--CCCeEEeCCCCHHHHHHHHHHHHHHhhhcccccc-----ccC--CccccccCCCChhhHHHH
Q 006006 110 I-TDGRVSAVMRGIRH--GACDYLIKPIREEELKNIWQHVVRKRWNENKEHE-----NSG--SLEETDHHKRGSDEIEYA 179 (665)
Q Consensus 110 I-a~sd~e~a~kALe~--GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~-----~~~--~le~~~~~~Lt~rEie~L 179 (665)
| .....+....++.. ||.+|+.|+.+.++|.++|+.+.++......... ... .........++.+|++++
T Consensus 85 vvlt~~~~~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lt~rE~~Vl 164 (216)
T PRK10100 85 LLLNTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEIL 164 (216)
T ss_pred EEEECCchhHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCcccCHHHHHHHHHhhcccccCCCccCCCCHHHHHHH
Confidence 7 22222355566664 9999999999999999999999877543221110 000 000011345899999999
Q ss_pred HhhccCCchhHHHHHhhcccccc
Q 006006 180 SSVNEGTEGTFKAQRKRISAKEE 202 (665)
Q Consensus 180 esl~eGse~~lka~~k~Is~k~~ 202 (665)
..+.+|..+..++....++.++.
T Consensus 165 ~l~~~G~s~~eIA~~L~iS~~TV 187 (216)
T PRK10100 165 NKLRIGASNNEIARSLFISENTV 187 (216)
T ss_pred HHHHcCCCHHHHHHHhCCCHHHH
Confidence 99999999999988888776554
No 41
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.50 E-value=4.7e-13 Score=133.01 Aligned_cols=115 Identities=27% Similarity=0.427 Sum_probs=97.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CE-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE-
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCL-YN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~g-y~-V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI- 110 (665)
++|+||||++..++.++.+|+..+ +. +..+.++.++++.++... ||+||+|+.||+++|+++++.++.....++|
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii~ 79 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRLK--PDVVFLDIQMPRISGLELVGMLDPEHMPYIVF 79 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHhcccCCCEEEE
Confidence 799999999999999999998766 33 457899999999988765 9999999999999999999998643333444
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
.....+++.+|++.||.+||.||++.++|..++.++.+..
T Consensus 80 vt~~~~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (238)
T PRK11697 80 VTAFDEYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQER 119 (238)
T ss_pred EeccHHHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 4445567889999999999999999999999999987543
No 42
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.50 E-value=6.8e-13 Score=130.24 Aligned_cols=117 Identities=37% Similarity=0.584 Sum_probs=104.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE-
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI- 110 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI- 110 (665)
..++||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~~--~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~ 82 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQ--PDLVILDVMMPKLDGYGVCQEIRKESDVPIIM 82 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEE
Confidence 3579999999999999999999988999999999999999887665 9999999999999999999999876778877
Q ss_pred --ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 --TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 --a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+.....++++.||++||.||++.++|...++.++++.
T Consensus 83 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 83 LTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred EECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 4566777789999999999999999999999998887654
No 43
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.49 E-value=5.9e-13 Score=132.01 Aligned_cols=115 Identities=20% Similarity=0.324 Sum_probs=102.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI--- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI--- 110 (665)
.+||||||++..+..+...|...++.+..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.....|+|
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~--~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~ 79 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILREQ--PDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLT 79 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 48999999999999999999998999999999999999998766 9999999999999999999999876667776
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+.....++++.||++||.||++.++|...++.++++.
T Consensus 80 ~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 80 SLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 3455666778999999999999999999999998877653
No 44
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.49 E-value=4.6e-13 Score=134.01 Aligned_cols=159 Identities=11% Similarity=-0.015 Sum_probs=124.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC---CEEEEECCHHHHHHHHHHcCCCceEEEEeCC--CCCCCHHHHHHHHhc-cCCc
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCL---YNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMDGFKLLEHIGL-EMDL 107 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~g---y~V~tAsngeEALelLre~k~~PDLVIlDI~--MP~mDGlELLe~Ir~-~~~I 107 (665)
|.|+||||++.++.+++.+|...+ ..+..+.+++++++.++..+ |||||+|+. |++.+|.+++++|++ .+.+
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~~--pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~ 78 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSLR--PSVVFINEDCFIHDASNSQRIKQIINQHPNT 78 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhccC--CCEEEEeCcccCCCCChHHHHHHHHHHCCCC
Confidence 569999999999999999998654 24568999999999987665 999999966 888899999999965 4667
Q ss_pred cEE---ecCchHHHHHHHHcCCCe-EEeCCCCHHHHHHHHHHHHHHhhhccccccccCCccccccCCCChhhHHHHHhhc
Q 006006 108 PVI---TDGRVSAVMRGIRHGACD-YLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVN 183 (665)
Q Consensus 108 PVI---a~sd~e~a~kALe~GA~D-YLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~~~~~le~~~~~~Lt~rEie~Lesl~ 183 (665)
++| ...+.... .++..|+.. |+.|+.+.++|..+++.+..+........ . .....++.+|++++..+.
T Consensus 79 ~iivlt~~~~~~~~-~~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~~~~~~------~-~~~~~LT~RE~eVL~lla 150 (207)
T PRK15411 79 LFIVFMAIANIHFD-EYLLVRKNLLISSKSIKPESLDDLLGDILKKETTITSFL------N-LPTLSLSRTESSMLRMWM 150 (207)
T ss_pred eEEEEECCCchhHH-HHHHHHhhceeeeccCCHHHHHHHHHHHHcCCcccCccc------c-CCcccCCHHHHHHHHHHH
Confidence 766 33444333 355555554 89999999999999999987654322110 0 011249999999999999
Q ss_pred cCCchhHHHHHhhcccccc
Q 006006 184 EGTEGTFKAQRKRISAKEE 202 (665)
Q Consensus 184 eGse~~lka~~k~Is~k~~ 202 (665)
+|..+..++.+..++.++.
T Consensus 151 ~G~snkeIA~~L~iS~~TV 169 (207)
T PRK15411 151 AGQGTIQISDQMNIKAKTV 169 (207)
T ss_pred cCCCHHHHHHHcCCCHHHH
Confidence 9999999999988887665
No 45
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.49 E-value=7.4e-13 Score=129.87 Aligned_cols=114 Identities=28% Similarity=0.467 Sum_probs=102.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCccEE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IPVI 110 (665)
.+||||||++..+..+...|+..++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|+|
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi 80 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPW--PDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 68999999999999999999988999999999999999987665 9999999999999999999999753 567877
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
...+.....++++.||++||.||++.++|...++.++++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 456677888999999999999999999999999988765
No 46
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.48 E-value=7.3e-13 Score=132.16 Aligned_cols=114 Identities=24% Similarity=0.429 Sum_probs=101.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE--ec
Q 006006 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI--TD 112 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI--a~ 112 (665)
+||||||++..+..+...|...++.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++....+|+| ..
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~l~~~i~~~~~~pii~lt~ 80 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASET--VDVVVVDLNLGREDGLEIVRSLATKSDVPIIIISG 80 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEEC
Confidence 8999999999999999999988999999999999999988766 9999999999999999999999876678877 22
Q ss_pred --CchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 113 --GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 113 --sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
.+.....++++.||++||.||++.++|...++.++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred CCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 24566778999999999999999999999998887653
No 47
>PRK14084 two-component response regulator; Provisional
Probab=99.48 E-value=8.3e-13 Score=132.37 Aligned_cols=115 Identities=18% Similarity=0.366 Sum_probs=98.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-C-EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCL-Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~g-y-~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI 110 (665)
|+||||||++..+..+..+|...+ + .+..+.+++++++.+.+.. ||+|++|+.||+++|+++++.++.. ...++|
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~~--~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI 78 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQ--YDIIFLDINLMDESGIELAAKIQKMKEPPAII 78 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEE
Confidence 589999999999999999998754 4 5678999999999998765 9999999999999999999999764 344455
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
.....+++.++++.||.+||.||++.++|..+++++.+..
T Consensus 79 ~~t~~~~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 79 FATAHDQFAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred EEecChHHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 4444567889999999999999999999999999987553
No 48
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.48 E-value=8e-13 Score=156.16 Aligned_cols=146 Identities=22% Similarity=0.270 Sum_probs=124.2
Q ss_pred ChhHHHHHHhcCC-------CCCcceeeeeccCCCCCC---------------CccEEEEEeCCHHHHHHHHHHHHhCCC
Q 006006 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQFP---------------AGLRVLVVDDDITCLRILEQMLRRCLY 58 (665)
Q Consensus 1 Lai~~~~V~~mgG-------sg~Gs~f~~~~~~~d~fP---------------~girVLIVDDD~~ire~Lk~lL~~~gy 58 (665)
|+|||++|+.||| .|.|++|++.+|.....| .+.+||||||++..+..+...|...+|
T Consensus 643 L~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~ 722 (828)
T PRK13837 643 LATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQAFFGPGPLPRGRGETVLLVEPDDATLERYEEKLAALGY 722 (828)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCccccCCCcccCCCCCCEEEEEcCCHHHHHHHHHHHHHCCC
Confidence 6899999999999 388999999987632111 246899999999999999999999999
Q ss_pred EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE---ecCchHHHHHHHHcCCCeEEeCCC
Q 006006 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI---TDGRVSAVMRGIRHGACDYLIKPI 134 (665)
Q Consensus 59 ~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI---a~sd~e~a~kALe~GA~DYLlKPv 134 (665)
.+..+.+++++++.+......||+||+ .||+++|+++++.++. .+.+||| ...+.....++++.| ++||.||+
T Consensus 723 ~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~ 799 (828)
T PRK13837 723 EPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAAPTLPIILGGNSKTMALSPDLLASV-AEILAKPI 799 (828)
T ss_pred EEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCC
Confidence 999999999999999765434799999 6999999999999974 4677877 345666677889999 99999999
Q ss_pred CHHHHHHHHHHHHHH
Q 006006 135 REEELKNIWQHVVRK 149 (665)
Q Consensus 135 ~~eEL~~aLq~Vlrk 149 (665)
+.++|..+++++++.
T Consensus 800 ~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 800 SSRTLAYALRTALAT 814 (828)
T ss_pred CHHHHHHHHHHHHcc
Confidence 999999999988764
No 49
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.47 E-value=1.6e-12 Score=125.25 Aligned_cols=149 Identities=24% Similarity=0.359 Sum_probs=118.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE---e
Q 006006 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI---T 111 (665)
Q Consensus 36 VLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI---a 111 (665)
|||+||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|+| .
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~ 78 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKDD--YDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTA 78 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEc
Confidence 689999999999999999988999999999999999988765 999999999999999999999974 4667777 4
Q ss_pred cCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccccccccCC----------ccccccCCCChhhHHHHHh
Q 006006 112 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGS----------LEETDHHKRGSDEIEYASS 181 (665)
Q Consensus 112 ~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~~~~~----------le~~~~~~Lt~rEie~Les 181 (665)
..+.....++++.||++|+.||++.++|...++.++++............. ........++.+|.+++..
T Consensus 79 ~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il~~ 158 (218)
T TIGR01387 79 RDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSHSLNSTVLEIADLRMDSVRHRVSRGNIRITLTRKEFQLLWL 158 (218)
T ss_pred CCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcccccCCCCeEEECCEEEEcccCEEEECCEEEeCCHHHHHHHHH
Confidence 667778889999999999999999999999999887664322211100000 0111223578889888888
Q ss_pred hccCC
Q 006006 182 VNEGT 186 (665)
Q Consensus 182 l~eGs 186 (665)
+....
T Consensus 159 l~~~~ 163 (218)
T TIGR01387 159 LMRRT 163 (218)
T ss_pred HHhCC
Confidence 77653
No 50
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.46 E-value=1.4e-12 Score=129.06 Aligned_cols=116 Identities=28% Similarity=0.474 Sum_probs=103.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE-
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI- 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI- 110 (665)
..+||||||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|+|
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ 82 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRES--FHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIM 82 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 468999999999999999999998999999999999999988765 9999999999999999999999754 567877
Q ss_pred --ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 --TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 --a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+.....++++.||++||.||++.++|...++.++++.
T Consensus 83 ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 83 LTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 4566777788999999999999999999999999887653
No 51
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.45 E-value=3.6e-13 Score=144.56 Aligned_cols=116 Identities=22% Similarity=0.435 Sum_probs=102.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCc
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDL 107 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~I 107 (665)
....+||||||++..+..+..+|.+ .+.+..+.++.+|+..+.+.+ |||||+|+.||+++|+++++.+++. +.+
T Consensus 153 ~~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~~~--~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~ 229 (457)
T PRK09581 153 DEDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAETN--YDLVIVSANFENYDPLRLCSQLRSKERTRYV 229 (457)
T ss_pred ccCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcccCC--CCEEEecCCCCCchHhHHHHHHHhccccCCC
Confidence 3567999999999999999999987 467778999999999987766 9999999999999999999999753 577
Q ss_pred cEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 108 PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 108 PVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
|+| .+.+++++.+|++.||+|||.||++.++|...+....+.
T Consensus 230 ~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 230 PILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred cEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 877 688999999999999999999999999999888765543
No 52
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.45 E-value=5e-12 Score=122.08 Aligned_cols=151 Identities=24% Similarity=0.375 Sum_probs=118.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE--
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI-- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI-- 110 (665)
|+|||+||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|+|
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~l 78 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSEM--YALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLL 78 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999888899999999999999887655 9999999999999999999999753 567776
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccccccccCCc---------cccccCCCChhhHHHHH
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSL---------EETDHHKRGSDEIEYAS 180 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~~~~~l---------e~~~~~~Lt~rEie~Le 180 (665)
...+.+...++++.||++|+.||++.++|...++.++++.............. .......++.+|.+++.
T Consensus 79 t~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il~ 158 (221)
T PRK15479 79 TARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAGQVQEVQQLGELIFHDEGYFLLQGQPLALTPREQALLT 158 (221)
T ss_pred ECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhhccCcCccEEECCEEEccCCeEEECCEEEecCHHHHHHHH
Confidence 45666777899999999999999999999999998877543211111000000 01112358999999998
Q ss_pred hhccCC
Q 006006 181 SVNEGT 186 (665)
Q Consensus 181 sl~eGs 186 (665)
.+..+.
T Consensus 159 ~l~~~~ 164 (221)
T PRK15479 159 VLMYRR 164 (221)
T ss_pred HHHhCC
Confidence 887754
No 53
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.44 E-value=4.9e-13 Score=157.53 Aligned_cols=115 Identities=30% Similarity=0.497 Sum_probs=104.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc--CCccE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDLPV 109 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~--~~IPV 109 (665)
.+.+||||||+...++..+.+|+..|..++.+.++.||++++.. .+.+|+|++|++||.|||+|..++||+. .++||
T Consensus 665 ~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~pI 743 (786)
T KOG0519|consen 665 TGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP-PHSYDVIFMDLQMPEMDGYEATREIRKKERWHLPI 743 (786)
T ss_pred cCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC-CCcccEEEEEcCCcccchHHHHHHHHHhhcCCCCE
Confidence 58899999999999999999999999999999999999999972 2359999999999999999999999765 48999
Q ss_pred E---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vl 147 (665)
| +..+.+...+|++.|.++||.||+..+.|..++++.+
T Consensus 744 vAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 744 VALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred EEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 9 6778888999999999999999999999999888765
No 54
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.43 E-value=6.6e-12 Score=123.25 Aligned_cols=149 Identities=21% Similarity=0.306 Sum_probs=117.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI--- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI--- 110 (665)
.+||||||++..+..+..+|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~~~~pii~l~ 88 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQTP--PDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVT 88 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 49999999999999999999988999999999999999998765 9999999999999999999999876677877
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhcccc---ccccC---------CccccccCCCChhhHHH
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKE---HENSG---------SLEETDHHKRGSDEIEY 178 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~---~~~~~---------~le~~~~~~Lt~rEie~ 178 (665)
...+.....++++.||++|+.||++.++|...++.++++....... ..... .........++.+|.++
T Consensus 89 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~e~~i 168 (240)
T PRK10710 89 AKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDESRFQASWRGKMLDLTPAEFRL 168 (240)
T ss_pred cCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhccccCCCccceEeCCEEEEcCceEEEECCEEeecCHHHHHH
Confidence 3456666778999999999999999999999998887653221110 00000 00011223578888888
Q ss_pred HHhhcc
Q 006006 179 ASSVNE 184 (665)
Q Consensus 179 Lesl~e 184 (665)
+..+..
T Consensus 169 l~~l~~ 174 (240)
T PRK10710 169 LKTLSH 174 (240)
T ss_pred HHHHHh
Confidence 887765
No 55
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.42 E-value=7.6e-12 Score=119.80 Aligned_cols=166 Identities=18% Similarity=0.293 Sum_probs=125.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCcc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLP 108 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~-gy~V-~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IP 108 (665)
...+||||||++..+..+..+|... ++.+ ..+.++++++..+.... ||+||+|+.+++++|+++++.++.. +..|
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~ 82 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKSLSGR 82 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 4479999999999999999999764 4554 47899999999998765 9999999999999999999999753 5566
Q ss_pred EE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccccc--------cccCCccccccCCCChhhHH
Q 006006 109 VI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH--------ENSGSLEETDHHKRGSDEIE 177 (665)
Q Consensus 109 VI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~--------~~~~~le~~~~~~Lt~rEie 177 (665)
+| ...+......+++.|+++|+.||++.++|...++.++++........ .............++.+|.+
T Consensus 83 vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~ 162 (216)
T PRK10651 83 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERD 162 (216)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHHhhcccCccccccccCCHHHHH
Confidence 66 45567778889999999999999999999999999876532111100 00000011122358999999
Q ss_pred HHHhhccCCchhHHHHHhhccc
Q 006006 178 YASSVNEGTEGTFKAQRKRISA 199 (665)
Q Consensus 178 ~Lesl~eGse~~lka~~k~Is~ 199 (665)
++..+.+|..+...+....++.
T Consensus 163 vl~~l~~g~~~~~ia~~l~is~ 184 (216)
T PRK10651 163 ILKLIAQGLPNKMIARRLDITE 184 (216)
T ss_pred HHHHHHcCCCHHHHHHHcCCCH
Confidence 9999999877777766655443
No 56
>PRK13557 histidine kinase; Provisional
Probab=99.42 E-value=3.6e-12 Score=139.76 Aligned_cols=148 Identities=24% Similarity=0.308 Sum_probs=123.9
Q ss_pred ChhHHHHHHhcCC-------CCCcceeeeeccCCCCC--------------CCccEEEEEeCCHHHHHHHHHHHHhCCCE
Q 006006 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQF--------------PAGLRVLVVDDDITCLRILEQMLRRCLYN 59 (665)
Q Consensus 1 Lai~~~~V~~mgG-------sg~Gs~f~~~~~~~d~f--------------P~girVLIVDDD~~ire~Lk~lL~~~gy~ 59 (665)
|+|+|++|+.||| .|.|+.|++.+|..... +.+.+||||||++..+..+..+|...++.
T Consensus 362 L~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~ 441 (540)
T PRK13557 362 LSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPEQEPKARAIDRGGTETILIVDDRPDVAELARMILEDFGYR 441 (540)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCCCCCCCcccccCCCceEEEEcCcHHHHHHHHHHHHhcCCe
Confidence 6899999999999 38899999998773210 12468999999999999999999988999
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhc-cCCccEE---ecCchHHHHHHHHcCCCeEEeCCC
Q 006006 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGL-EMDLPVI---TDGRVSAVMRGIRHGACDYLIKPI 134 (665)
Q Consensus 60 V~tAsngeEALelLre~k~~PDLVIlDI~MP~-mDGlELLe~Ir~-~~~IPVI---a~sd~e~a~kALe~GA~DYLlKPv 134 (665)
+..+.++.++++.+... ..||+||+|..|++ ++|+++++.++. .+.+|+| ...+......++..|+.+|+.||+
T Consensus 442 v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~ 520 (540)
T PRK13557 442 TLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVLLTTGYAEASIERTDAGGSEFDILNKPY 520 (540)
T ss_pred EEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEEEEcCCCchhhhhhhccccCCceeeCCC
Confidence 99999999999998653 13999999999997 999999999975 3567766 345556667788999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 006006 135 REEELKNIWQHVVRK 149 (665)
Q Consensus 135 ~~eEL~~aLq~Vlrk 149 (665)
+.++|...++.++..
T Consensus 521 ~~~~l~~~l~~~~~~ 535 (540)
T PRK13557 521 RRAELARRVRMVLDG 535 (540)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999877653
No 57
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.42 E-value=4.7e-12 Score=120.88 Aligned_cols=162 Identities=22% Similarity=0.234 Sum_probs=122.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPV 109 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~-~gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPV 109 (665)
.++||||||++..+..+...|.. .++.+. .+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +..|+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~i 83 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLD--PDVILLDLNMKGMSGLDTLNALRRDGVTAQI 83 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHhCCCCeE
Confidence 47999999999999999999975 467664 7899999999887665 9999999999999999999999754 45565
Q ss_pred E---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccccc----c--ccCCccccccCCCChhhHHHHH
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH----E--NSGSLEETDHHKRGSDEIEYAS 180 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~----~--~~~~le~~~~~~Lt~rEie~Le 180 (665)
| ...+.....++++.|+++|+.||++.++|...++.++++........ . ............++.+|.+++.
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~e~~vl~ 163 (215)
T PRK10403 84 IILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELDVLH 163 (215)
T ss_pred EEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCCeecCHHHHHHHHhhhccCCCCcccccCCHHHHHHHH
Confidence 5 45666778889999999999999999999999998765432111000 0 0000011122468899999999
Q ss_pred hhccCCchhHHHHHhh
Q 006006 181 SVNEGTEGTFKAQRKR 196 (665)
Q Consensus 181 sl~eGse~~lka~~k~ 196 (665)
.+.+|......+....
T Consensus 164 ~~~~g~s~~~ia~~l~ 179 (215)
T PRK10403 164 ELAQGLSNKQIASVLN 179 (215)
T ss_pred HHHCCCCHHHHHHHcC
Confidence 9988876666555443
No 58
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.42 E-value=2.1e-12 Score=121.55 Aligned_cols=117 Identities=31% Similarity=0.464 Sum_probs=102.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI 110 (665)
...+||||||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.|++++|+++++.++.. +.+|+|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~ii 79 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLR--FGCVVTDVRMPGIDGIELLRRLKARGSPLPVI 79 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccCC--CCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEE
Confidence 4579999999999999999999888999999999999999887665 9999999999999999999999743 567776
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+.....++++.|+.+|+.||++.++|...++.++...
T Consensus 80 ~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~ 122 (202)
T PRK09390 80 VMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQA 122 (202)
T ss_pred EEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhh
Confidence 4567778889999999999999999999999988877653
No 59
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.42 E-value=9.8e-12 Score=117.45 Aligned_cols=165 Identities=18% Similarity=0.229 Sum_probs=124.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~-gy~V-~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPV 109 (665)
.++|||+||++..+..+...|... .+.+ ..+.++.++++.+.... ||+||+|+.|++++|+++++.++. .+..|+
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 80 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQLE--PDIVILDLGLPGMNGLDVIPQLHQRWPAMNI 80 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHCCCCcE
Confidence 479999999999999999999765 4554 47899999999887765 999999999999999999999975 356676
Q ss_pred E---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhcccc-----ccccCCccccccCCCChhhHHHHHh
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKE-----HENSGSLEETDHHKRGSDEIEYASS 181 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~-----~~~~~~le~~~~~~Lt~rEie~Les 181 (665)
| ...+......+++.|+.+|+.||++.++|...++.++++....... ..............++.+|.+++..
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~e~~vl~l 160 (211)
T PRK15369 81 LVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGKRYIDPALNREAILALLNADDTNPPLLTPRERQILKL 160 (211)
T ss_pred EEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCceeCHHHHHHHHHHhccCCCCcccCCCHHHHHHHHH
Confidence 6 4566677888999999999999999999999999877653211100 0000001112234588999999999
Q ss_pred hccCCchhHHHHHhhccc
Q 006006 182 VNEGTEGTFKAQRKRISA 199 (665)
Q Consensus 182 l~eGse~~lka~~k~Is~ 199 (665)
+.+|..+...+....++.
T Consensus 161 ~~~g~~~~~Ia~~l~~s~ 178 (211)
T PRK15369 161 ITEGYTNRDIAEQLSISI 178 (211)
T ss_pred HHCCCCHHHHHHHhCCCH
Confidence 988877766666554443
No 60
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.40 E-value=4.5e-12 Score=128.85 Aligned_cols=115 Identities=26% Similarity=0.392 Sum_probs=98.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC---Cc
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM---DL 107 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~-gy~-V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~---~I 107 (665)
.++||||||++..+..+..+|... ++. +..+.++.++++.+.... ||+||+|+.||++||+++++.++... ..
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQQ--PDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 479999999999999999999864 444 457999999999998776 99999999999999999999997532 25
Q ss_pred cEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 108 PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 108 PVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
|+| +..+.....++++.|+++|+.||++.++|...+++++..
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 666 556777788999999999999999999999999987654
No 61
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.37 E-value=5.7e-12 Score=137.55 Aligned_cols=118 Identities=36% Similarity=0.596 Sum_probs=105.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccE
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPV 109 (665)
...++||||||++..+..+..+|...++.|..+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~DlvilD~~m~~~~G~~~~~~ir~~~~~~~v 80 (441)
T PRK10365 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV--FDLVLCDVRMAEMDGIATLKEIKALNPAIPV 80 (441)
T ss_pred CCcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeE
Confidence 34589999999999999999999998999999999999999988665 999999999999999999999964 356777
Q ss_pred E---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
| .+.+.+.+.++++.||.+||.||++.++|..++++++...
T Consensus 81 i~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~ 124 (441)
T PRK10365 81 LIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 (441)
T ss_pred EEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 6 4567788999999999999999999999999998877643
No 62
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.36 E-value=6.1e-12 Score=120.37 Aligned_cols=113 Identities=25% Similarity=0.431 Sum_probs=101.3
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCcc
Q 006006 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLP 108 (665)
Q Consensus 30 fP~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IP 108 (665)
.|+. ..||||||..++..|..-+++-||.|.+|.+.+||+..++... |.-.++|++|.+.+|+++++.|+.. .+..
T Consensus 7 ~pd~-~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~--PayAvvDlkL~~gsGL~~i~~lr~~~~d~r 83 (182)
T COG4567 7 GPDK-SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAP--PAYAVVDLKLGDGSGLAVIEALRERRADMR 83 (182)
T ss_pred CCCc-eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCC--CceEEEEeeecCCCchHHHHHHHhcCCcce
Confidence 3444 7999999999999999999999999999999999999999887 9999999999999999999999743 4444
Q ss_pred EE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHH
Q 006006 109 VI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 145 (665)
Q Consensus 109 VI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~ 145 (665)
+| +|.+...+.+|++.||++||.||-+.+++..++.+
T Consensus 84 ivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 84 IVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred EEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 43 78999999999999999999999999999887764
No 63
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.35 E-value=1.1e-11 Score=131.95 Aligned_cols=99 Identities=27% Similarity=0.360 Sum_probs=85.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHH-hCCCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE-
Q 006006 34 LRVLVVDDDITCLRILEQMLR-RCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~-~~gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI- 110 (665)
++||||||++..+..++.+|. ..++.+. .+.++++|++.+.+.. ||+|++|+.||+|+|++++++++....+|+|
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~~--pDlVllD~~mp~~~G~e~l~~l~~~~~~pviv 78 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQP--PDVILMDLEMPRMDGVEATRRIMAERPCPILI 78 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhccC--CCEEEEcCCCCCCCHHHHHHHHHHHCCCcEEE
Confidence 589999999999999999995 4577765 7899999999998766 9999999999999999999999766667777
Q ss_pred -e-c--CchHHHHHHHHcCCCeEEeCCC
Q 006006 111 -T-D--GRVSAVMRGIRHGACDYLIKPI 134 (665)
Q Consensus 111 -a-~--sd~e~a~kALe~GA~DYLlKPv 134 (665)
. . .+.+...++++.||.+||.||+
T Consensus 79 vs~~~~~~~~~~~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 79 VTSLTERNASRVFEAMGAGALDAVDTPT 106 (337)
T ss_pred EeCCCCcCHHHHHHHHhcCceEEEECCC
Confidence 2 2 2355677899999999999999
No 64
>PRK15115 response regulator GlrR; Provisional
Probab=99.34 E-value=1.3e-11 Score=135.40 Aligned_cols=115 Identities=30% Similarity=0.517 Sum_probs=103.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE-
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI- 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI- 110 (665)
..+||||||++..+..+...|...++.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~~--~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIv 82 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNREK--VDLVISDLRMDEMDGMQLFAEIQKVQPGMPVII 82 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 479999999999999999999998999999999999999998765 999999999999999999999964 3567776
Q ss_pred --ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 111 --TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 111 --a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
...+...+.++++.||.+||.||++.++|...++++++.
T Consensus 83 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 83 LTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 456777888999999999999999999999999988764
No 65
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.34 E-value=1.7e-11 Score=135.41 Aligned_cols=115 Identities=34% Similarity=0.469 Sum_probs=103.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE--
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI-- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI-- 110 (665)
.+||||||++..+..++.+|...++.|..+.++.+|+..+.... ||+||+|+.||++||+++++.++. .+.+|+|
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~~--~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIvl 81 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKT--PDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 58999999999999999999998999999999999999998766 999999999999999999999974 3567766
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
.+.+.+.+.++++.||.+||.||++.++|...+++++...
T Consensus 82 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 122 (469)
T PRK10923 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (469)
T ss_pred ECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHHH
Confidence 5677788899999999999999999999999998887643
No 66
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.34 E-value=1.5e-11 Score=134.96 Aligned_cols=116 Identities=34% Similarity=0.514 Sum_probs=103.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccE
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPV 109 (665)
+...+||||||++..+..+...|...++.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|+
T Consensus 2 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlillD~~~p~~~g~~ll~~i~~~~~~~pv 79 (457)
T PRK11361 2 TAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIH--PDVVLMDIRMPEMDGIKALKEMRSHETRTPV 79 (457)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 34679999999999999999999998999999999999999998765 999999999999999999999964 356777
Q ss_pred E---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
| .+.+.+.+.++++.||.|||.||++.++|...+++++.
T Consensus 80 I~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 80 ILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred EEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 6 56778888999999999999999999999988887654
No 67
>PRK13435 response regulator; Provisional
Probab=99.32 E-value=3.5e-11 Score=111.01 Aligned_cols=115 Identities=22% Similarity=0.304 Sum_probs=97.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCccEE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP-~mDGlELLe~Ir~~~~IPVI 110 (665)
.++|||+|+++..+..+...|...++.+. .+.+++++++.+.+.. ||+||+|+.++ +.+|+++++.++....+|+|
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~dliivd~~~~~~~~~~~~~~~l~~~~~~pii 82 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRRQ--PDVALVDVHLADGPTGVEVARRLSADGGVEVV 82 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhcC--CCEEEEeeecCCCCcHHHHHHHHHhCCCCCEE
Confidence 47999999999999999999988888876 7899999999887655 99999999998 58999999999766678887
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
.....+ ...++..|+++|+.||++.++|...++++..+.
T Consensus 83 ~ls~~~~-~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (145)
T PRK13435 83 FMTGNPE-RVPHDFAGALGVIAKPYSPRGVARALSYLSARR 122 (145)
T ss_pred EEeCCHH-HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcC
Confidence 322333 356788999999999999999999999887654
No 68
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.30 E-value=2.4e-11 Score=133.29 Aligned_cols=110 Identities=25% Similarity=0.392 Sum_probs=98.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC-----CCHHHHHHHHhc-cCCccE
Q 006006 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIGL-EMDLPV 109 (665)
Q Consensus 36 VLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~-----mDGlELLe~Ir~-~~~IPV 109 (665)
||||||++..+..+...+ .+|.|..+.++.+|++.+.... ||+||+|+.||+ ++|+++++.++. .+.+||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~~--~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~pi 76 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRHE--PAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKV 76 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCE
Confidence 689999999999999988 5899999999999999998765 999999999996 899999999964 466777
Q ss_pred E---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
| ...+.+.+.+|++.||+|||.||++.++|..++++++..
T Consensus 77 I~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 77 IVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred EEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 7 567788899999999999999999999999999887653
No 69
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.29 E-value=3e-11 Score=129.76 Aligned_cols=101 Identities=35% Similarity=0.481 Sum_probs=91.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~g--y~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI 110 (665)
.+|||||||....|+.|+++|...+ ..|.++.|+.+|++++.+.. ||+|.+|+.||.|||++++++|-....+|||
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~--PDVi~ld~emp~mdgl~~l~~im~~~p~pVi 78 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLK--PDVITLDVEMPVMDGLEALRKIMRLRPLPVI 78 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC--CCEEEEecccccccHHHHHHHHhcCCCCcEE
Confidence 3799999999999999999999886 56779999999999999887 9999999999999999999999777889988
Q ss_pred -----ecCchHHHHHHHHcCCCeEEeCCCC
Q 006006 111 -----TDGRVSAVMRGIRHGACDYLIKPIR 135 (665)
Q Consensus 111 -----a~sd~e~a~kALe~GA~DYLlKPv~ 135 (665)
.....+...+|+++||.||+.||..
T Consensus 79 mvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 79 MVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 2344677889999999999999974
No 70
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.28 E-value=2e-10 Score=98.44 Aligned_cols=116 Identities=32% Similarity=0.552 Sum_probs=99.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDL 107 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy-~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~I 107 (665)
+.++|+++|+++..+..++..|...++ .+..+.++.+++..+.... +|++++|..+++++|+++++.++.. ..+
T Consensus 4 ~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~ 81 (129)
T PRK10610 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG--FGFVISDWNMPNMDGLELLKTIRADGAMSAL 81 (129)
T ss_pred ccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhccC--CCEEEEcCCCCCCCHHHHHHHHHhCCCcCCC
Confidence 457999999999999999999988777 4778899999999887665 9999999999999999999999753 456
Q ss_pred cEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 108 PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 108 PVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
|+| ...+.....++++.|+.+|+.||++.++|...+++++++
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 82 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred cEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 666 344566778899999999999999999999999887654
No 71
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.27 E-value=4.6e-11 Score=131.55 Aligned_cols=113 Identities=34% Similarity=0.508 Sum_probs=101.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE---e
Q 006006 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI---T 111 (665)
Q Consensus 36 VLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI---a 111 (665)
||||||++..+..+...|...++.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+|+| .
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~ 78 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQ--PDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTA 78 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeC
Confidence 689999999999999999988999999999999999998765 999999999999999999999974 3567776 4
Q ss_pred cCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 112 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 112 ~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
+.+...+.++++.|+++||.||++.++|...+++++...
T Consensus 79 ~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 117 (463)
T TIGR01818 79 HSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHA 117 (463)
T ss_pred CCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHHH
Confidence 566777889999999999999999999999998876643
No 72
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.26 E-value=1.1e-10 Score=125.35 Aligned_cols=115 Identities=34% Similarity=0.511 Sum_probs=102.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCccEE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IPVI 110 (665)
.+||||||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|+|
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICEREQ--PDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 48999999999999999999888999999999999999998766 9999999999999999999999753 357777
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+.....++++.||++|+.||++.++|..+++.+++..
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (457)
T PRK09581 81 MVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLK 123 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 4567778889999999999999999999999998877644
No 73
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.25 E-value=9.9e-11 Score=125.36 Aligned_cols=101 Identities=32% Similarity=0.443 Sum_probs=87.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~-gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI 110 (665)
.++||||||++..+..+..+|... ++.+. .+.++.++++.+.... ||+|++|+.||+++|++++++|+....+|+|
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~~--~DlVllD~~mp~~dgle~l~~i~~~~~~piI 80 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLN--PDVITLDVEMPVMDGLDALEKIMRLRPTPVV 80 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhhC--CCEEEEeCCCCCCChHHHHHHHHHhCCCCEE
Confidence 479999999999999999999876 77776 8999999999998766 9999999999999999999999765458877
Q ss_pred --e-c--CchHHHHHHHHcCCCeEEeCCCC
Q 006006 111 --T-D--GRVSAVMRGIRHGACDYLIKPIR 135 (665)
Q Consensus 111 --a-~--sd~e~a~kALe~GA~DYLlKPv~ 135 (665)
. . .......++++.||++||.||+.
T Consensus 81 vls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 81 MVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred EEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 2 2 23456778999999999999994
No 74
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.20 E-value=1.2e-10 Score=133.78 Aligned_cols=116 Identities=22% Similarity=0.240 Sum_probs=98.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI 110 (665)
+.++||||||++..+..+..+|...+|.|..+.++.++++.+.... |||||+|+.||+++|++++++++. .+.+|+|
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~~--~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI 83 (665)
T PRK13558 6 PTRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAGE--IDCVVADHEPDGFDGLALLEAVRQTTAVPPVV 83 (665)
T ss_pred cceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhccC--CCEEEEeccCCCCcHHHHHHHHHhcCCCCCEE
Confidence 3479999999999999999999888899999999999999997665 999999999999999999999975 4668877
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHH--HHHHHHHHHHHH
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREE--ELKNIWQHVVRK 149 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~e--EL~~aLq~Vlrk 149 (665)
...+.+.+.++++.||.+||.||.... ++...++.++..
T Consensus 84 ~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 84 VVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 466778889999999999999997543 555666555543
No 75
>PRK09191 two-component response regulator; Provisional
Probab=99.15 E-value=7.1e-10 Score=111.81 Aligned_cols=115 Identities=22% Similarity=0.327 Sum_probs=94.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCccEE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP~-mDGlELLe~Ir~~~~IPVI 110 (665)
..+|||+||++..+..++..|+..++.+. .+.++.++++.+.... ||+||+|+.||+ ++|+++++.++....+|+|
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~--~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii 214 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKTR--PGLILADIQLADGSSGIDAVNDILKTFDVPVI 214 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhccC--CCEEEEecCCCCCCCHHHHHHHHHHhCCCCEE
Confidence 35899999999999999999988788877 7899999999998765 999999999995 8999999999754478887
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
.....+....+...++.+|+.||++.++|...++++...
T Consensus 215 ~ls~~~~~~~~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 215 FITAFPERLLTGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred EEeCCCcHHHHHHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 222223333445577899999999999999999887554
No 76
>PRK13502 transcriptional activator RhaR; Provisional
Probab=99.12 E-value=2.9e-11 Score=124.78 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=58.9
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
+||+++|++|.+||+++||++|+ +||..++++|.|||..|||.|..||++.|||.+|+||+
T Consensus 212 ~fk~~~G~t~~~yi~~~Rl~~A~-----~lL~~t~~sI~eIA~~~GF~d~s~F~r~FKk~~G~tP~ 272 (282)
T PRK13502 212 QFRAQTGMTINQYLRQVRICHAQ-----YLLQHSPLMISEISMQCGFEDSNYFSVVFTRETGMTPS 272 (282)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHcCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 88888999999999999999999999999999999996
No 77
>PRK13503 transcriptional activator RhaS; Provisional
Probab=99.12 E-value=3.1e-11 Score=123.76 Aligned_cols=61 Identities=15% Similarity=0.057 Sum_probs=59.1
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
+||+.+|++|.+||+++||++|+ +||..++++|.|||.+|||.|+.||++.|||++|+||+
T Consensus 207 ~Fk~~~G~S~~~yi~~~Rl~~A~-----~LL~~~~~sI~eIA~~~GF~~~s~F~r~FKk~~G~TP~ 267 (278)
T PRK13503 207 QLKQQTGLTPQRYLNRLRLLKAR-----HLLRHSDASVTDIAYRCGFGDSNHFSTLFRREFSWSPR 267 (278)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 88888999999999999999999999999999999997
No 78
>PRK13501 transcriptional activator RhaR; Provisional
Probab=99.11 E-value=3.3e-11 Score=125.32 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=59.2
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
+||+++|++|.+||+++||++|+ +||..++++|.|||..|||.|..||.|.|||++|+||+
T Consensus 212 ~Fk~~~G~T~~qyi~~~Ri~~A~-----~LL~~t~~sI~eIA~~~GF~~~s~F~r~FKk~~G~TP~ 272 (290)
T PRK13501 212 LFRQQTGMSISHYLRQIRLCHAK-----CLLRGSEHRISDIAARCGFEDSNYFSAVFTREAGMTPR 272 (290)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 88889999999999999999999999999999999997
No 79
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.11 E-value=6.5e-11 Score=125.40 Aligned_cols=63 Identities=57% Similarity=0.869 Sum_probs=60.7
Q ss_pred CCCCCchhhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHh
Q 006006 214 TTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLN 281 (665)
Q Consensus 214 ~sKKprvvfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~ 281 (665)
..||+|++|+.++|++|+++|+++|++||+||+||++|++++||+++|++|| |+||.++|+..
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHL-----QKYRl~rk~l~ 294 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHL-----QKYRSHRRHLA 294 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHH-----HHHHHhccccc
Confidence 6789999999999999999999999999999999999999999999999999 99999999864
No 80
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=99.09 E-value=5.6e-11 Score=106.64 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=58.5
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.|++.+|.+|.+||+++||++|+ ++|..+++++.+||..+||.|+++|++.|||++|+||+
T Consensus 41 ~f~~~~g~s~~~~i~~~Rl~~a~-----~~L~~~~~~i~~iA~~~Gf~~~s~f~~~Fk~~~G~tP~ 101 (107)
T PRK10219 41 MFRTVTHQTLGDYIRQRRLLLAA-----VELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPS 101 (107)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHccCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 78888999999999999999999999999999999996
No 81
>PRK13500 transcriptional activator RhaR; Provisional
Probab=99.08 E-value=5.6e-11 Score=125.65 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=59.0
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.||+.+|++|.+||+++||++|+ +||..++++|.|||..|||.|.+||+++|||++|+||+
T Consensus 242 ~FK~~tG~T~~~yi~~~RL~~A~-----~LL~~t~~sI~eIA~~~GF~d~s~Fsr~FKk~~G~TP~ 302 (312)
T PRK13500 242 QFRQQTGMTINQYLRQVRVCHAQ-----YLLQHSRLLISDISTECGFEDSNYFSVVFTRETGMTPS 302 (312)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 78888999999999999999999999999999999997
No 82
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=99.06 E-value=7.9e-11 Score=122.19 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=58.7
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
+||+.+|.+|.+||+++||++|+ .||..++++|.|||..|||.|+.||+|.|||++|+||+
T Consensus 219 ~Fk~~~G~tp~~~l~~~Rl~~A~-----~lL~~t~~sI~eIA~~~GF~d~s~Fsr~FKk~~G~SP~ 279 (290)
T PRK10572 219 LFRQQLGISVLRWREDQRISRAK-----LLLQTTRMPIATIGRNVGYDDQLYFSRVFKKCTGASPS 279 (290)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 77788999999999999999999999999999999997
No 83
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=99.06 E-value=8.3e-11 Score=121.34 Aligned_cols=61 Identities=11% Similarity=0.068 Sum_probs=58.5
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
+||+.+|++|.+||+.+||++|+ +||..++++|.|||..|||.|.+||++.|||++|+||+
T Consensus 222 ~Fk~~~G~t~~~yi~~~Rl~~A~-----~lL~~t~~sI~eIA~~~GF~s~s~Fsr~FKk~~G~tP~ 282 (287)
T TIGR02297 222 ICRRFSALSPKRLIIERVMQEAR-----RLLLFTQHSINQIAYDLGYKDPAYFARFFQKETGLSPS 282 (287)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 67778999999999999999999999999999999996
No 84
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.02 E-value=5.2e-09 Score=85.03 Aligned_cols=108 Identities=36% Similarity=0.579 Sum_probs=93.0
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE---ec
Q 006006 37 LVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI---TD 112 (665)
Q Consensus 37 LIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI---a~ 112 (665)
+++|+++..+..+...+...++.+..+.+..+++..+.... +|++|+|..+++.+|+++++.++.. ..+|++ ..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEK--PDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAH 78 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhCC--CCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEEec
Confidence 57899999999999999888899999999999999887765 9999999999999999999999653 556766 33
Q ss_pred CchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006006 113 GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146 (665)
Q Consensus 113 sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~V 146 (665)
.+.....++++.|+.+|+.||++.++|...++++
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 4566677889999999999999999998888654
No 85
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.02 E-value=1.9e-09 Score=107.09 Aligned_cols=116 Identities=24% Similarity=0.322 Sum_probs=99.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE-
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI- 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V-~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI- 110 (665)
.++||++||+++.+..+...|...+|.+ +.+.++-++.+.+.... ||+||+|+.||..|-++-+........-|+|
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~--pDvVildie~p~rd~~e~~~~~~~~~~~piv~ 82 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQ--PDVVILDIEMPRRDIIEALLLASENVARPIVA 82 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhcC--CCEEEEecCCCCccHHHHHHHhhcCCCCCEEE
Confidence 4799999999999999999999888865 57888999999998887 9999999999999954444444455555665
Q ss_pred --ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 --TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 --a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
.+++...+.+|++.||.+||+||++...|..++.-+..+.
T Consensus 83 lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf 124 (194)
T COG3707 83 LTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRF 124 (194)
T ss_pred EEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHH
Confidence 7899999999999999999999999999999988776654
No 86
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=99.00 E-value=2e-10 Score=118.48 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=58.7
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.||+.+|.+|.+||+++||++|+ +||..++++|.|||..+||.|..||.+.|||++|+||+
T Consensus 208 ~fk~~~G~t~~~yi~~~Rl~~A~-----~lL~~t~~sI~eIA~~~GF~~~s~F~r~FKk~~G~TP~ 268 (278)
T PRK10296 208 ATRRYYGKTPMQIINEIRINFAK-----KQLEMTNYSVTDIAFEAGYSSPSLFIKTFKKLTSFTPG 268 (278)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 77888999999999999999999999999999999996
No 87
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=98.99 E-value=2.9e-10 Score=105.91 Aligned_cols=61 Identities=8% Similarity=0.020 Sum_probs=58.1
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
+|++++|.+|.+||+.+|+++|+ ++|..+++++.|||..+||.|+.+|++.|||++|+||.
T Consensus 45 ~Fk~~~G~s~~~~l~~~Rl~~A~-----~~L~~t~~~i~eIA~~~Gf~s~s~F~r~Fkk~~G~tP~ 105 (127)
T PRK11511 45 MFKKETGHSLGQYIRSRKMTEIA-----QKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPH 105 (127)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999985 66777899999999999999999999999999999997
No 88
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.96 E-value=3.4e-09 Score=109.21 Aligned_cols=114 Identities=29% Similarity=0.425 Sum_probs=97.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CC-EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccE-E
Q 006006 34 LRVLVVDDDITCLRILEQMLRRC-LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV-I 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~-gy-~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPV-I 110 (665)
++|++|||++..++.|..++... .. .+..+.++.++++.++... ||++++||.||+++|+++...++.....|. +
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fldI~~~~~~G~ela~~i~~~~~~~~Iv 79 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGLR--PDLVFLDIAMPDINGIELAARIRKGDPRPAIV 79 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhccC--CCeEEEeeccCccchHHHHHHhcccCCCCeEE
Confidence 78999999999999999999832 22 2337899999999998775 999999999999999999999987544444 4
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
.....+++..|++..|.|||.||++.++|...+....+.
T Consensus 80 fvt~~~~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 80 FVTAHDEYAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEehHHHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 667778888999999999999999999999999876553
No 89
>PF12833 HTH_18: Helix-turn-helix domain; PDB: 2K9S_A 3LSG_C 3OIO_A 1D5Y_B 3GBG_A 3OOU_A 1BL0_A 1XS9_A 3MN2_B 3MKL_B ....
Probab=98.94 E-value=3.8e-10 Score=95.96 Aligned_cols=61 Identities=20% Similarity=0.288 Sum_probs=52.4
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHh-CCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELM-NVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL-~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.|++++|.+|.+|++.+||++|. ++| ..+++++.|||..+||.|.++|.+.||+++|+||+
T Consensus 15 ~f~~~~g~s~~~~~~~~R~~~a~-----~~L~~~~~~~i~~ia~~~Gf~~~~~f~~~fk~~~g~tP~ 76 (81)
T PF12833_consen 15 IFKKETGMSFKQYLRELRLQRAK-----ELLRQNTDLSIAEIAEECGFSSQSHFSRAFKRYFGMTPS 76 (81)
T ss_dssp HHHHHHSS-HHHHHHHHHHHHHH-----HHHHHHTT--HHHHHHHTT-SSHHHHHHHHHHHHSS-HH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHHhhcccHHHHHHHcCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999994 666 45999999999999999999999999999999995
No 90
>COG2207 AraC AraC-type DNA-binding domain-containing proteins [Transcription]
Probab=98.89 E-value=1.1e-09 Score=98.10 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=58.8
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.|+..+|.++.+|++++||++|. ++|..++.+|.|||..+||.|..||.+.|||.+|+||+
T Consensus 56 ~f~~~~g~s~~~~~~~~Rl~~A~-----~lL~~~~~~i~~iA~~~Gf~~~s~F~~~Fk~~~g~tP~ 116 (127)
T COG2207 56 LFKKETGTSPSQYLRQLRLEEAR-----RLLRSTDLSITEIALRLGYSSPSHFSRAFKRLFGVTPS 116 (127)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCcCCHHHHHHHHHHHhCCChH
Confidence 69999999999999999999995 88889999999999999999999999999999999997
No 91
>PRK10693 response regulator of RpoS; Provisional
Probab=98.89 E-value=9.3e-09 Score=108.59 Aligned_cols=86 Identities=23% Similarity=0.458 Sum_probs=74.6
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE---ecCchHHHHHHHHcCCCeEEeCCC-CH
Q 006006 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI---TDGRVSAVMRGIRHGACDYLIKPI-RE 136 (665)
Q Consensus 62 tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI---a~sd~e~a~kALe~GA~DYLlKPv-~~ 136 (665)
.+.++++|++.++... ||+||+|+.||+++|++++++++.. ..+|+| ...+.+.+.++++.||+|||.||+ +.
T Consensus 2 ~a~~g~~al~~l~~~~--pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~ 79 (303)
T PRK10693 2 LAANGVDALELLGGFT--PDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDL 79 (303)
T ss_pred EeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcH
Confidence 4788999999998765 9999999999999999999999754 567877 566778888999999999999999 58
Q ss_pred HHHHHHHHHHHHH
Q 006006 137 EELKNIWQHVVRK 149 (665)
Q Consensus 137 eEL~~aLq~Vlrk 149 (665)
++|...++++++.
T Consensus 80 ~~L~~~i~~~l~~ 92 (303)
T PRK10693 80 NRLREMVFACLYP 92 (303)
T ss_pred HHHHHHHHHHhhh
Confidence 9999988887654
No 92
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.83 E-value=1.9e-09 Score=113.92 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=58.7
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.|++++|.+|.+||+++|+++|+ ++|..+++++.|||..+||.|.+||++.|||++|+||+
T Consensus 227 ~Fk~~~G~t~~~~l~~~Rl~~A~-----~lL~~~~~si~eIA~~~Gf~~~s~F~r~Fk~~~G~tP~ 287 (302)
T PRK10371 227 IFQRVMQLTMKQYITAMRINHVR-----ALLSDTDKSILDIALTAGFRSSSRFYSTFGKYVGMSPQ 287 (302)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHH-----HHHhcCCCCHHHHHHHcCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 78888999999999999999999999999999999997
No 93
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=98.81 E-value=2.2e-09 Score=113.68 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=59.1
Q ss_pred hhhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 220 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 220 vvfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.+||+++|.+|.+|++++||++|+ ++|..+++++.+||..+||.|..||++.|||++|+||+
T Consensus 253 r~fk~~~g~s~~~~~~~~Rl~~A~-----~lL~~~~~~i~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 314 (322)
T PRK09393 253 RRFEAATGMTPAEWLLRERLARAR-----DLLESSALSIDQIAERAGFGSEESLRHHFRRRAATSPA 314 (322)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 379999999999999999999995 78888999999999999999999999999999999996
No 94
>PRK09978 DNA-binding transcriptional regulator GadX; Provisional
Probab=98.81 E-value=2e-09 Score=112.94 Aligned_cols=60 Identities=13% Similarity=0.259 Sum_probs=56.9
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.||++ |.+|.+||+++||++|+ +||..+++++.|||..+||.|..||++.|||++|+||+
T Consensus 178 ~Fk~~-G~S~~~yl~~~Rl~~A~-----~LL~~t~~sI~eIA~~~GF~s~S~Fsr~FKk~~G~TPs 237 (274)
T PRK09978 178 KLREE-ETSYSQLLTECRMQRAL-----QLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPT 237 (274)
T ss_pred HHHhc-CCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 68876 99999999999999995 77888999999999999999999999999999999997
No 95
>PRK15121 right oriC-binding transcriptional activator; Provisional
Probab=98.76 E-value=4.4e-09 Score=110.08 Aligned_cols=61 Identities=10% Similarity=0.045 Sum_probs=58.5
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
+|+..+|.++.+||+++||++|+ .+|..+++++.+||..+||.|+++|++.|||.+|+||+
T Consensus 41 ~F~~~~g~s~~~yi~~~Rl~~A~-----~~L~~~~~~i~~iA~~~Gf~s~~~f~r~Fk~~~g~sP~ 101 (289)
T PRK15121 41 MFKDVTGHAIGAYIRARRLSKAA-----VALRLTSRPILDIALQYRFDSQQTFTRAFKKQFAQTPA 101 (289)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 77777999999999999999999999999999999997
No 96
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=98.76 E-value=3.4e-09 Score=110.31 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=54.5
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCC--CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNV--PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~--~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.|++ .|.+|.+||+++||++|+ ++|.. ++++|.|||..+||.|..||++.|||.+|+||+
T Consensus 234 ~Fk~-~G~T~~~yi~~~RL~~A~-----~lL~~~~~~~sI~eIA~~~GF~d~s~Fsr~Fkk~~G~sP~ 295 (302)
T PRK09685 234 LFAE-QGLVVAQYIRNRRLDRCA-----DDLRPAADDEKITSIAYKWGFSDSSHFSTAFKQRFGVSPG 295 (302)
T ss_pred HHHH-cCCCHHHHHHHHHHHHHH-----HHhhhhccCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 7886 599999999999999995 66632 578999999999999999999999999999997
No 97
>PRK15044 transcriptional regulator SirC; Provisional
Probab=98.72 E-value=5.6e-09 Score=110.17 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=57.2
Q ss_pred hhhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 220 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 220 vvfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.+|+.+ +.+|.+|+.++||++|+ +||..+++++.+||.+|||.|++||++.|||++|+||+
T Consensus 227 R~Fk~e-g~T~~~y~~~~RL~~A~-----~LL~~t~~sIseIA~~~GFss~S~FsRaFKk~fG~TPs 287 (295)
T PRK15044 227 RKLAAE-EVSFSKIYLDARMNQAI-----KLLRMGAGNISQVATMCGYDTPSYFIAIFKRHFKITPL 287 (295)
T ss_pred HHHHHc-CCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCChHHHHHHHHHHHCcCHH
Confidence 368876 89999999999999995 88889999999999999999999999999999999996
No 98
>PRK09940 transcriptional regulator YdeO; Provisional
Probab=98.72 E-value=6.4e-09 Score=108.04 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=54.3
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.||++ |.+|.+||+++||++|. +||.. +.++.+||..|||.|..||++.|||++|+||+
T Consensus 170 ~FK~~-G~T~~eyl~~~Rl~~A~-----~LL~~-~~sI~eIA~~~GF~s~S~Fsr~FKr~~G~TPs 228 (253)
T PRK09940 170 KLKQE-QTTFSQILLDARMQHAK-----NLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 (253)
T ss_pred HHHHc-CCCHHHHHHHHHHHHHH-----HHHcc-CCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 68887 99999999999999995 56664 67999999999999999999999999999997
No 99
>PRK15185 transcriptional regulator HilD; Provisional
Probab=98.68 E-value=8.8e-09 Score=109.50 Aligned_cols=60 Identities=12% Similarity=0.053 Sum_probs=56.6
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.|+. +|.+|.+|++++||++|. +||..+++++.+||.++||.|+.||++.|||++|+||+
T Consensus 242 ~FK~-~G~S~~~yl~~~Ri~~A~-----~LL~~t~~sIseIA~~~GFss~S~FsR~FKk~~G~TPs 301 (309)
T PRK15185 242 KLAE-EGTSFSDIYLSARMNQAA-----KLLRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPS 301 (309)
T ss_pred HHHH-cCCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 5775 799999999999999995 88888999999999999999999999999999999997
No 100
>PRK15340 transcriptional regulator InvF; Provisional
Probab=98.65 E-value=1.7e-08 Score=102.54 Aligned_cols=62 Identities=16% Similarity=0.051 Sum_probs=56.6
Q ss_pred hhhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 220 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 220 vvfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
++|++.+|.++.+|++++|+.+|. .+|..++.++.+||..+||.|++||++.||+++|+||+
T Consensus 144 RlFk~~~G~tpk~yl~~~Rl~~al-----l~L~~s~~sItdIA~~~GY~d~ShFsr~FKk~~G~TPs 205 (216)
T PRK15340 144 RLCSRALGGKAKSELRNWRMAQSL-----LNSVEGHENITQLAVNHGYSSPSHFSSEIKELIGVSPR 205 (216)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HhhhcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 379999999999999999998873 44456799999999999999999999999999999997
No 101
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=98.61 E-value=2.2e-08 Score=107.40 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=60.4
Q ss_pred chhhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 219 RVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 219 rvvfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
-+.|+++||.++.+|+.++|+++|+ +||..+.++|.+||..|||.|+.+|+|.||+.+|.+|+
T Consensus 254 eRlF~~~lG~sP~~yy~~lRL~~Ar-----~LL~~t~~si~~IA~~~GF~sa~~fsr~fr~~fg~~P~ 316 (328)
T COG4977 254 ERLFRAELGVSPARYYLRLRLERAR-----RLLEQTRLSIAEIAVACGFSSASHFSRAFRRQFGLSPS 316 (328)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHH-----HHHHhCCCcHHHHHHHhCCCCHHHHHHHHHHHhCCChH
Confidence 3479999999999999999999996 88999999999999999999999999999999999997
No 102
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein.
Probab=98.61 E-value=3.5e-08 Score=82.18 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=56.9
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.|+..+|.++.++++..|+++|. ++|...++++.+||.++||.|..||++.||+++|+||.
T Consensus 21 ~f~~~~~~s~~~~~~~~r~~~a~-----~~l~~~~~~~~~ia~~~g~~s~~~f~r~Fk~~~g~sp~ 81 (84)
T smart00342 21 LFKKETGTTPKQYLRDRRLERAR-----RLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTPS 81 (84)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCChHHHHHHHHHHHCcChh
Confidence 68999999999999999999994 66666789999999999999999999999999999996
No 103
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=98.61 E-value=1.8e-08 Score=106.59 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=56.7
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.|+++ |.+|.+|+.++||++|. +||..+++++.+||..|||.|++||++.|||++|+||+
T Consensus 217 ~Fk~~-g~s~~~~~~~~Rl~~A~-----~lL~~~~~sI~~IA~~~GY~s~S~Fsr~FK~~~G~TP~ 276 (291)
T PRK15186 217 KLKQE-NTSFSEVYLNARMNKAT-----KLLRNSEYNITRVAYMCGYDSASYFTCVFKKHFKTTPS 276 (291)
T ss_pred HHHHc-CCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 68886 99999999999999994 77888999999999999999999999999999999997
No 104
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=98.59 E-value=8.6e-08 Score=78.32 Aligned_cols=49 Identities=67% Similarity=1.040 Sum_probs=47.2
Q ss_pred CCchhhHHHHhHHHHHHHHHhcc-cccchHHHHHHhCCCCCCHHHHHhhh
Q 006006 217 KPRVVWSVELHQQFVSAVNQLGI-DKAVPKRILELMNVPGLTRENVASHL 265 (665)
Q Consensus 217 KprvvfK~Elg~tFvdyLn~lRI-eKA~PKkILeLL~~~~LtI~EVAs~V 265 (665)
|+|+.|+.++|..|+++|..+|. +.|.||+|+++|..+++|+.+|++|+
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~ 50 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHL 50 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHH
Confidence 46789999999999999999998 99999999999999999999999999
No 105
>PRK15029 arginine decarboxylase; Provisional
Probab=98.54 E-value=5.9e-07 Score=105.75 Aligned_cols=111 Identities=14% Similarity=0.217 Sum_probs=83.6
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHHhCCCEEEEECCHHHHHHHHHH-cCCCceEEEEeCCCCCCCHH----HHHHH
Q 006006 34 LRVLVVDDDIT--------CLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDMDGF----KLLEH 100 (665)
Q Consensus 34 irVLIVDDD~~--------ire~Lk~lL~~~gy~V~tAsngeEALelLre-~k~~PDLVIlDI~MP~mDGl----ELLe~ 100 (665)
|||||||||.. +++.|+..|+..+|.|..+.++++|+++++. .. ||+||+|++||+++|+ +++++
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~--~DlVLLD~~LPd~dG~~~~~ell~~ 78 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEA--IDCLMFSYQMEHPDEHQNVRQLIGK 78 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCC--CcEEEEECCCCCCccchhHHHHHHH
Confidence 58999999995 6999999999999999999999999999976 34 9999999999999997 89999
Q ss_pred Hhcc-CCccEE---ecCc-hHHHHHHHHcCCCeEEeCCCCHHHH-HHHHHHH
Q 006006 101 IGLE-MDLPVI---TDGR-VSAVMRGIRHGACDYLIKPIREEEL-KNIWQHV 146 (665)
Q Consensus 101 Ir~~-~~IPVI---a~sd-~e~a~kALe~GA~DYLlKPv~~eEL-~~aLq~V 146 (665)
||+. ..+||| +..+ .+.+-.-.---+.+|+.+--+..++ ...+...
T Consensus 79 IR~~~~~iPIIlLTar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (755)
T PRK15029 79 LHERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAA 130 (755)
T ss_pred HHhhCCCCCEEEEEcCCcccccCCHHHHHhhheEEEecCCCHHHHHHHHHHH
Confidence 9853 578988 2222 1221111223367788887665554 3334443
No 106
>PRK10130 transcriptional regulator EutR; Provisional
Probab=98.54 E-value=5.6e-08 Score=105.35 Aligned_cols=64 Identities=9% Similarity=-0.008 Sum_probs=57.9
Q ss_pred hhhHHHHhHHHHHHHHHhcccccchHHHHHHhCC---CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCCC
Q 006006 220 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNV---PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQGG 288 (665)
Q Consensus 220 vvfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~---~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~~ 288 (665)
..||+.+|+++.+||+.+||++|. ++|.. ++.+|.+||.++||.+..||++.|||.+|++|+..
T Consensus 275 r~Fk~~~G~sp~~ylr~~RL~~ar-----~lL~~~~~~~~sI~eIA~~~GF~~~s~Fs~~fk~~fG~tPs~T 341 (350)
T PRK10130 275 NAFHAILGIGPNAWLKRIRLNAVR-----RELISPWSQSTTVKDAAMQWGFWHLGQFATDYQQLFAEKPSLT 341 (350)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHhccCCCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCcHHH
Confidence 379999999999999999999994 55544 68999999999999999999999999999999843
No 107
>PRK15435 bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase; Provisional
Probab=98.45 E-value=1.3e-07 Score=102.55 Aligned_cols=60 Identities=5% Similarity=-0.042 Sum_probs=56.4
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
+|++++|.+|.+|++.+|+++|. ++|. +++++.+||..+||.|.++|++.|||++|+||+
T Consensus 119 ~Fkk~~G~TP~~yl~~~Rl~~A~-----~lL~-~~~sI~eIA~~~Gf~s~s~F~~~Fkk~~G~TPs 178 (353)
T PRK15435 119 LFKATTGMTPKAWQQAWRARRLR-----EALA-KGESVTTSILNAGFPDSSSYYRKADETLGMTAK 178 (353)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHh-CCCCHHHHHHHhCCCChHHHHHHHHHHHCcCch
Confidence 79999999999999999999994 5564 679999999999999999999999999999998
No 108
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=98.30 E-value=9.6e-07 Score=106.21 Aligned_cols=85 Identities=15% Similarity=0.242 Sum_probs=69.2
Q ss_pred ChhHHHHHHhcCC-------CCCcceeeeeccCCC----------CCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEE
Q 006006 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPD----------QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTC 63 (665)
Q Consensus 1 Lai~~~~V~~mgG-------sg~Gs~f~~~~~~~d----------~fP~girVLIVDDD~~ire~Lk~lL~~~gy~V~tA 63 (665)
|+|||++|++||| .|.|++|++.+|+.. ....+.+||||||++.+++.+..+|+..|+.|.++
T Consensus 640 LaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~~~~~~~~~~~~~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a 719 (894)
T PRK10618 640 FFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKMLAADPEVEEEEEKLLDGVTVLLDITSEEVRKIVTRQLENWGATCITP 719 (894)
T ss_pred HHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEccCCcccccccccccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEc
Confidence 6899999999999 399999999998731 11246899999999999999999999999999988
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCCCCH
Q 006006 64 SQAAVALDILRERKGCFDVVLSDVHMPDMDG 94 (665)
Q Consensus 64 sngeEALelLre~k~~PDLVIlDI~MP~mDG 94 (665)
.++. ... .+||||+|+.+ .++|
T Consensus 720 ~~~~------~~~--~~Dlvl~D~~~-~~~~ 741 (894)
T PRK10618 720 DERL------ISQ--EYDIFLTDNPS-NLTA 741 (894)
T ss_pred Cccc------cCC--CCCEEEECCCC-cCCC
Confidence 7532 223 39999999984 4443
No 109
>COG2169 Ada Adenosine deaminase [Nucleotide transport and metabolism]
Probab=98.04 E-value=3.2e-06 Score=84.04 Aligned_cols=62 Identities=5% Similarity=0.015 Sum_probs=58.5
Q ss_pred chhhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 219 RVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 219 rvvfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
+..||+++|++|.+|....||..|+ ++|..++ +|.+++..+||.+.++|+..|++++|++|+
T Consensus 115 ~R~FK~~~G~Tp~~ya~a~R~~~a~-----~~L~~g~-sv~~a~~daGf~s~s~F~~af~~~~G~~P~ 176 (187)
T COG2169 115 HRLFKAITGMTPKEYARARRMGRAR-----KQLRMGA-SVTDAQIDAGFESSSRFYDAFSKILGMTPT 176 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHH-----HHHhCCC-chhHHHHHhCCCChHHHHHHHHHHcCCChH
Confidence 3479999999999999999999995 7788888 999999999999999999999999999998
No 110
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=97.90 E-value=6.4e-06 Score=62.46 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=26.6
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.++++.+||+++|| +..||++.||+++|+||+
T Consensus 7 ~~~~l~~iA~~~g~-S~~~f~r~Fk~~~g~tp~ 38 (42)
T PF00165_consen 7 QKLTLEDIAEQAGF-SPSYFSRLFKKETGMTPK 38 (42)
T ss_dssp SS--HHHHHHHHTS--HHHHHHHHHHHTSS-HH
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHHHHHHCcCHH
Confidence 56999999999999 999999999999999995
No 111
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=97.79 E-value=0.00018 Score=85.40 Aligned_cols=141 Identities=19% Similarity=0.199 Sum_probs=112.0
Q ss_pred ChhHHHHHHhcCC-------CCCcceeeeeccCCCC-----------CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEE
Q 006006 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQ-----------FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTT 62 (665)
Q Consensus 1 Lai~~~~V~~mgG-------sg~Gs~f~~~~~~~d~-----------fP~girVLIVDDD~~ire~Lk~lL~~~gy~V~t 62 (665)
|+|||++|+.||| .|.|++|++.+|+... ...+.+|+|+||++..+..+..+|...++.+..
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~~~~~~~~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~ 565 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPIIDGLPTDCLAGKRLLYVEPNSAAAQATLDILSETPLEVTY 565 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCccccccCCccccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence 6899999999999 3889999999877311 124679999999999999999999999999999
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH-hcc--CCccEE---ecCchHHHHHHHHcCCCeEEeCCCCH
Q 006006 63 CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLE--MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIRE 136 (665)
Q Consensus 63 AsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~I-r~~--~~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~ 136 (665)
+.+..+ +.... ||++|+|+.||++++.+.+... +.. ...++| ...+.....++.+.|+++|+.||+..
T Consensus 566 ~~~~~~----l~~~~--~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~ 639 (919)
T PRK11107 566 SPTLSQ----LPEAH--YDILLLGLPVTFREPLTMLHERLAKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSH 639 (919)
T ss_pred cCCHHH----hccCC--CCEEEecccCCCCCCHHHHHHHHHhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCH
Confidence 988887 33333 9999999999998877665444 321 222333 44566667788999999999999999
Q ss_pred HHHHHHHHHHH
Q 006006 137 EELKNIWQHVV 147 (665)
Q Consensus 137 eEL~~aLq~Vl 147 (665)
.+|...+....
T Consensus 640 ~~l~~~l~~~~ 650 (919)
T PRK11107 640 TRLLPALLEPC 650 (919)
T ss_pred HHHHHHHHHhh
Confidence 99998887654
No 112
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=97.54 E-value=7.4e-05 Score=83.24 Aligned_cols=91 Identities=34% Similarity=0.475 Sum_probs=75.2
Q ss_pred CCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE--ecCchHHHHHHHHcCCCeEEeCCC
Q 006006 57 LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI--TDGRVSAVMRGIRHGACDYLIKPI 134 (665)
Q Consensus 57 gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI--a~sd~e~a~kALe~GA~DYLlKPv 134 (665)
.+.|.++..+.+|+..+..++ ||++++|+.||+|+|+++++.++..+...++ +..+...-.+++++|++++|+||+
T Consensus 12 ~~~v~~a~~g~~~l~~~~~~~--~~~~lld~~m~~~~~~~~~~~lk~~~~~~v~~t~~~~~~~~~~~~~~~~~~~l~~~~ 89 (435)
T COG3706 12 YKEVATAKKGLIALAILLDHK--PDYKLLDVMMPGMDGFELCRRLKAEPATVVMVTALDDSAPRVRGLKAGADDFLTKPV 89 (435)
T ss_pred hhhhhhccchHHHHHHHhcCC--CCeEEeecccCCcCchhHHHHHhcCCcceEEEEecCCCCcchhHHhhhhhhhccCCC
Confidence 356777999999999998877 9999999999999999999999877655333 455566667899999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 006006 135 REEELKNIWQHVVRK 149 (665)
Q Consensus 135 ~~eEL~~aLq~Vlrk 149 (665)
+...+......+.+.
T Consensus 90 ~~~~~~~r~~~l~~~ 104 (435)
T COG3706 90 NDSQLFLRAKSLVRL 104 (435)
T ss_pred ChHHHHHhhhhhccc
Confidence 998887777666543
No 113
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.47 E-value=0.00095 Score=47.03 Aligned_cols=55 Identities=40% Similarity=0.643 Sum_probs=48.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCC
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP 90 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP 90 (665)
++|+++|+++..+..+...+...++.+..+.+..+++..+.... +|++++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEK--PDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCC
Confidence 47999999999999999999888899999999999999887665 99999998764
No 114
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=96.77 E-value=0.0088 Score=54.78 Aligned_cols=105 Identities=15% Similarity=0.163 Sum_probs=70.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEe-CCCCCCCHHHHHHHH-hccCCccEEec
Q 006006 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD-VHMPDMDGFKLLEHI-GLEMDLPVITD 112 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlD-I~MP~mDGlELLe~I-r~~~~IPVIa~ 112 (665)
||||||||...|..|+.+|+=.|+.+..++..+. ........ .+.+++- ...+ ...++++.+ +..+++|++.-
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~~~--~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlll 75 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWSSP--WEACAVILGSCS--KLAELLKELLKWAPHIPVLLL 75 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhhcC--CcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEE
Confidence 6999999999999999999988988887776444 23333332 4444433 3333 445666666 46689999822
Q ss_pred CchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006006 113 GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146 (665)
Q Consensus 113 sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~V 146 (665)
.+.... ..+ ..+.+-|..|++..+|.++++++
T Consensus 76 g~~~~~-~~~-~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 76 GEHDSP-EEL-PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCCCcc-ccc-cCeeEecCCCCCHHHHHHHHHHh
Confidence 222222 111 12666789999999999999875
No 115
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=94.87 E-value=0.57 Score=43.41 Aligned_cols=108 Identities=14% Similarity=0.052 Sum_probs=77.0
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhcc-
Q 006006 35 RVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLE- 104 (665)
Q Consensus 35 rVLIV----DDD~~ire~Lk~lL~~~gy~V~t---AsngeEALelLre~k~~PDLVIlDI~MP~m--DGlELLe~Ir~~- 104 (665)
||++. |.|..=...+..+|+..||+|.. ....++.++.+.+.. ||+|.+-..++.. .--++++.+++.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~--~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQED--VDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 45555 67777777888888888999874 345788889888877 9999998877542 224456666544
Q ss_pred C-CccEE-e-cCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHH
Q 006006 105 M-DLPVI-T-DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQ 144 (665)
Q Consensus 105 ~-~IPVI-a-~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq 144 (665)
. .++++ + ..-.+...+..++|+++|+..-.+.++....++
T Consensus 79 ~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 79 AGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 3 55665 2 233445667789999999998888888766553
No 116
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=94.83 E-value=0.68 Score=44.22 Aligned_cols=113 Identities=15% Similarity=0.026 Sum_probs=84.1
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhc
Q 006006 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (665)
Q Consensus 33 girVLIV----DDD~~ire~Lk~lL~~~gy~V~t---AsngeEALelLre~k~~PDLVIlDI~MP~m--DGlELLe~Ir~ 103 (665)
+.+||+. |.|..=...+..+|+..||+|.. ....++.++.+.+.. ||+|.+-..|... .-.++++++++
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~--~d~V~lS~~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETD--ADAILVSSLYGHGEIDCRGLREKCIE 80 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCccccCHHHHHHHHHHHHh
Confidence 4678888 88888888999999999999874 446788899888876 9999999888642 34456667754
Q ss_pred c--CCccEE--ec-----C-chHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006006 104 E--MDLPVI--TD-----G-RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147 (665)
Q Consensus 104 ~--~~IPVI--a~-----s-d~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vl 147 (665)
. .+++|+ +. . ..+...++.++|++.......+.+++...+++.+
T Consensus 81 ~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 81 AGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred cCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 4 356665 11 1 2334467888999988888888898888777654
No 117
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=94.23 E-value=1.4 Score=41.97 Aligned_cols=108 Identities=11% Similarity=-0.028 Sum_probs=75.5
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCH-HHHHHHHhcc--CCccEE-e
Q 006006 40 DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIGLE--MDLPVI-T 111 (665)
Q Consensus 40 DDD~~ire~Lk~lL~~~gy~V~t---AsngeEALelLre~k~~PDLVIlDI~MP~-mDG-lELLe~Ir~~--~~IPVI-a 111 (665)
|-|..-...+..+|+..||+|.. ..+.+++++.+.+.. +|+|.+-..+.. +.. -++++.+++. .+++|+ +
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~--adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 55666677788888888999874 457889999988876 999998776642 222 2345555543 256666 2
Q ss_pred -cCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 112 -DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 112 -~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
..-.+...+..++|+++|+..--+..++...+.+.+..
T Consensus 91 G~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~~ 129 (132)
T TIGR00640 91 GVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLRK 129 (132)
T ss_pred CCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH
Confidence 12333455677899999999888999988888775543
No 118
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=93.68 E-value=0.6 Score=42.56 Aligned_cols=91 Identities=14% Similarity=0.095 Sum_probs=63.8
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-C-CccEE--
Q 006006 40 DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-M-DLPVI-- 110 (665)
Q Consensus 40 DDD~~ire~Lk~lL~~~gy~V~t---AsngeEALelLre~k~~PDLVIlDI~MP~--mDGlELLe~Ir~~-~-~IPVI-- 110 (665)
|.+..=...+..+|+..||+|.. ....++.++.+.+.+ ||+|.+-..+.. .+..++++.+++. + +++|+
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~--pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEED--ADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 66777788899999999999864 345678888888876 999999887654 2456677777655 3 57666
Q ss_pred ecCchHHHHHHHHcCCCeEEeC
Q 006006 111 TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlK 132 (665)
+..-......+.+.|++.|+..
T Consensus 88 G~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 88 GAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred CCCCChhHHHHHHcCCeEEECC
Confidence 2222222346778899777663
No 119
>PRK15435 bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase; Provisional
Probab=91.65 E-value=0.15 Score=55.91 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=31.7
Q ss_pred CCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 253 VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 253 ~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
...+++.++|.++|++ ..||.+.||+++|+||+.
T Consensus 97 ~~~lsl~eLA~~lG~S-~~~L~R~Fkk~~G~TP~~ 130 (353)
T PRK15435 97 ETPVTLEALADQVAMS-PFHLHRLFKATTGMTPKA 130 (353)
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHCcCHHH
Confidence 5789999999999996 999999999999999984
No 120
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=91.37 E-value=0.087 Score=59.79 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=48.8
Q ss_pred HHHHHH-HHHhcccccchHHHHHHhCCCC------CCHH-HHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 228 QQFVSA-VNQLGIDKAVPKRILELMNVPG------LTRE-NVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 228 ~tFvdy-Ln~lRIeKA~PKkILeLL~~~~------LtI~-EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.++.+| +.+.|+++|. .||-.+. +.++ +||+.+||.+..||...||++.|++|.
T Consensus 208 ~~~~ey~l~~~r~~~a~-----~ll~~s~~v~~~~~k~y~~iaekl~~~~~~~~~~~~k~~~~~~p~ 269 (475)
T COG4753 208 APFQEYGLLRKRLEQAK-----LLLVTSEQVSIYVLKVYREIAEKLGFEEADYFDYRFKKYLGMTPD 269 (475)
T ss_pred chHHHHHHHHHHHHHHH-----HHHhcccchhHHHHHHHHHHHHHhcccccchhhHhhcccccCChH
Confidence 899999 9999999994 5566666 6777 999999999999999999999999997
No 121
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=89.96 E-value=1.9 Score=45.42 Aligned_cols=109 Identities=22% Similarity=0.248 Sum_probs=72.7
Q ss_pred CccEEEEEeCCHHH-------HHHHHHHHHhCCCEEE--EECCHHHHHHHHHHcCCCceEEEEeCCCC---------CCC
Q 006006 32 AGLRVLVVDDDITC-------LRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP---------DMD 93 (665)
Q Consensus 32 ~girVLIVDDD~~i-------re~Lk~lL~~~gy~V~--tAsngeEALelLre~k~~PDLVIlDI~MP---------~mD 93 (665)
..+|+=|+.|+... .+..+.++++ ++.|. .+.+...|-.+.+ .. +++| || +..
T Consensus 92 ~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~-Gf~vlpyc~dd~~~ar~l~~-~G--~~~v-----mPlg~pIGsg~Gi~ 162 (248)
T cd04728 92 DWIKLEVIGDDKTLLPDPIETLKAAEILVKE-GFTVLPYCTDDPVLAKRLED-AG--CAAV-----MPLGSPIGSGQGLL 162 (248)
T ss_pred CeEEEEEecCccccccCHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHH-cC--CCEe-----CCCCcCCCCCCCCC
Confidence 34677677666533 3333444433 78776 4455666655544 33 7887 66 221
Q ss_pred HHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHHH
Q 006006 94 GFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 149 (665)
Q Consensus 94 GlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl-----KPv~~eEL~~aLq~Vlrk 149 (665)
-.++++.|++..++||| .....+.+.+|++.||+..+. |.-++..+.+.+..++..
T Consensus 163 ~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 163 NPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred CHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 26888888776789999 467889999999999999875 445677777777776654
No 122
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=88.54 E-value=0.31 Score=50.84 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=30.7
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
..++++++|.++|+ +..||++.||+.+|+||+.
T Consensus 198 ~~isl~~lA~~~~l-S~~~l~r~Fk~~~G~tp~~ 230 (290)
T PRK10572 198 SEFDIESVAQHVCL-SPSRLAHLFRQQLGISVLR 230 (290)
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHHHHHHCcCHHH
Confidence 78999999999998 6699999999999999984
No 123
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=88.50 E-value=8.7 Score=36.89 Aligned_cols=104 Identities=13% Similarity=0.001 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHhcc--CCccEE--e-
Q 006006 42 DITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGLE--MDLPVI--T- 111 (665)
Q Consensus 42 D~~ire~Lk~lL~~~gy~V~---tAsngeEALelLre~k~~PDLVIlDI~MP~-mD-GlELLe~Ir~~--~~IPVI--a- 111 (665)
|..=...+..+|+..||+|. .....++.++.+.++. +|+|-+-..|.. +. --++.+.+++. .++++| .
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~--adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~ 91 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETK--ADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGN 91 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCC
Confidence 34445667888898999986 4567899999998876 999999887753 22 23455556543 245554 1
Q ss_pred ----cCchH-HHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006006 112 ----DGRVS-AVMRGIRHGACDYLIKPIREEELKNIWQHVV 147 (665)
Q Consensus 112 ----~sd~e-~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vl 147 (665)
..|+. ...++.++|++......-..+++.+.+++.+
T Consensus 92 ~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 92 LVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred cCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 12333 2446778999888888788898888887754
No 124
>PRK00208 thiG thiazole synthase; Reviewed
Probab=87.79 E-value=3.1 Score=43.90 Aligned_cols=109 Identities=21% Similarity=0.216 Sum_probs=72.9
Q ss_pred CccEEEEEeCCHH-------HHHHHHHHHHhCCCEEE--EECCHHHHHHHHHHcCCCceEEEEeCCCC---------CCC
Q 006006 32 AGLRVLVVDDDIT-------CLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP---------DMD 93 (665)
Q Consensus 32 ~girVLIVDDD~~-------ire~Lk~lL~~~gy~V~--tAsngeEALelLre~k~~PDLVIlDI~MP---------~mD 93 (665)
..+|+=|+.|+.. ..+..+.+++ .++.|. .+.+..+|-++.+ .. +|+| || +..
T Consensus 92 ~~iKlEVi~d~~~llpd~~~tv~aa~~L~~-~Gf~vlpyc~~d~~~ak~l~~-~G--~~~v-----mPlg~pIGsg~gi~ 162 (250)
T PRK00208 92 NWIKLEVIGDDKTLLPDPIETLKAAEILVK-EGFVVLPYCTDDPVLAKRLEE-AG--CAAV-----MPLGAPIGSGLGLL 162 (250)
T ss_pred CeEEEEEecCCCCCCcCHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHH-cC--CCEe-----CCCCcCCCCCCCCC
Confidence 3467777776543 3333444443 378776 4456666655554 33 8887 66 121
Q ss_pred HHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHHH
Q 006006 94 GFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 149 (665)
Q Consensus 94 GlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl-----KPv~~eEL~~aLq~Vlrk 149 (665)
-.++++.+++..++||| .....+.+.+|+++||+..+. |.-++..+.+.+..++..
T Consensus 163 ~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 163 NPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred CHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 26788888776789999 467889999999999999875 545677777777776654
No 125
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=87.41 E-value=1.1 Score=47.93 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=52.3
Q ss_pred EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH-HhccCCccEE--ecCchHHHHHHHHcCCCeEEeCCCC
Q 006006 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH-IGLEMDLPVI--TDGRVSAVMRGIRHGACDYLIKPIR 135 (665)
Q Consensus 59 ~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~-Ir~~~~IPVI--a~sd~e~a~kALe~GA~DYLlKPv~ 135 (665)
.++.+.+..++-.... .-.+|++|..+-. ..++. +-..+.+.++ ...+.+...+|++.||.|||.+|++
T Consensus 3 ~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~----~~~~~~~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~ 74 (322)
T TIGR03815 3 ELDVAPDPEAARRAWA----RAPLVLVDADMAE----ACAAAGLPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLPEA 74 (322)
T ss_pred ceEEccCchhhhhccc----cCCeEEECchhhh----HHHhccCCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeCCCC
Confidence 4455555554433221 3688999875411 11222 2233444444 3557888999999999999999999
Q ss_pred HHHHHHHHHHH
Q 006006 136 EEELKNIWQHV 146 (665)
Q Consensus 136 ~eEL~~aLq~V 146 (665)
.++|.+.+.++
T Consensus 75 ~~~l~~~l~~~ 85 (322)
T TIGR03815 75 EGWLVELLADL 85 (322)
T ss_pred HHHHHHHHHhh
Confidence 99999988775
No 126
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=87.06 E-value=5.6 Score=36.65 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=68.0
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHh-ccCCccEE--ecC-chHHHH
Q 006006 46 LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIG-LEMDLPVI--TDG-RVSAVM 119 (665)
Q Consensus 46 re~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~--mDGlELLe~Ir-~~~~IPVI--a~s-d~e~a~ 119 (665)
...|...|+..+++|..+.+.++++..++... .+..|++|+. ++ ....+++++++ ....+||. ... ..+.+-
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~-~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l~ 83 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIESFT-DIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDLP 83 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHHCTT-TEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCCC
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHHhCC-CeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccCC
Confidence 34566777767999999999999999999865 5899999996 21 23457788886 45789988 221 222222
Q ss_pred HHHHcCCCeEEeCCCC-HHHHHHHHHHHHH
Q 006006 120 RGIRHGACDYLIKPIR-EEELKNIWQHVVR 148 (665)
Q Consensus 120 kALe~GA~DYLlKPv~-~eEL~~aLq~Vlr 148 (665)
..+-..+++|+...-+ .+.+...+..+++
T Consensus 84 ~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~ 113 (115)
T PF03709_consen 84 AEVLGEVDGFIWLFEDTAEFIARRIEAAAR 113 (115)
T ss_dssp HHHHCCESEEEETTTTTHHHHHHHHHHHHH
T ss_pred HHHHhhccEEEEecCCCHHHHHHHHHHHHH
Confidence 2344567888888754 4555556665554
No 127
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=85.82 E-value=0.66 Score=43.32 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=29.5
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
..+++.+||+++|. +..+|.+.||+.+|+||+.
T Consensus 24 ~~~sl~~lA~~~g~-S~~~l~r~Fk~~~G~s~~~ 56 (127)
T PRK11511 24 SPLSLEKVSERSGY-SKWHLQRMFKKETGHSLGQ 56 (127)
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 45999999999986 5689999999999999984
No 128
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=85.77 E-value=0.9 Score=40.68 Aligned_cols=33 Identities=9% Similarity=-0.000 Sum_probs=29.3
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
..+++++||.++|++- .+|.+.||+++|+||+.
T Consensus 20 ~~~~~~~lA~~~~~S~-~~l~r~f~~~~g~s~~~ 52 (107)
T PRK10219 20 QPLNIDVVAKKSGYSK-WYLQRMFRTVTHQTLGD 52 (107)
T ss_pred CCCCHHHHHHHHCCCH-HHHHHHHHHHHCcCHHH
Confidence 4599999999998765 69999999999999984
No 129
>COG2169 Ada Adenosine deaminase [Nucleotide transport and metabolism]
Probab=85.08 E-value=0.99 Score=45.60 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=30.5
Q ss_pred CCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 253 VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 253 ~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
.+..+.+++|..+|+ ++.||++.||+.+|+||+.
T Consensus 95 ~~~~~le~la~~lg~-sp~~~~R~FK~~~G~Tp~~ 128 (187)
T COG2169 95 PEKRWLEELADELGV-SPSTLHRLFKAITGMTPKE 128 (187)
T ss_pred CCcccHHHHHHHhCC-ChHHHHHHHHHHhCCCHHH
Confidence 578889999999987 5689999999999999984
No 130
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=84.34 E-value=8.6 Score=38.67 Aligned_cols=97 Identities=15% Similarity=0.102 Sum_probs=68.9
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhc
Q 006006 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (665)
Q Consensus 33 girVLIV----DDD~~ire~Lk~lL~~~gy~V~tA---sngeEALelLre~k~~PDLVIlDI~MP~m--DGlELLe~Ir~ 103 (665)
+.+|++. |.|.+=...+..+|+..||+|.-. ...++.++.+++.. ||+|-+-..|... +..++++.+++
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHK--PDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHH
Confidence 4688888 888888899999999999998743 35688888888876 9999999877653 34456677765
Q ss_pred cC---CccEE-ecCchHHHHHHHHcCCCeEEeC
Q 006006 104 EM---DLPVI-TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 104 ~~---~IPVI-a~sd~e~a~kALe~GA~DYLlK 132 (665)
.. +++|+ +-.-+.. .-+-+.||+.|-.-
T Consensus 160 ~~~~~~~~i~vGG~~~~~-~~~~~~GaD~~~~d 191 (201)
T cd02070 160 AGLRDKVKVMVGGAPVNQ-EFADEIGADGYAED 191 (201)
T ss_pred CCCCcCCeEEEECCcCCH-HHHHHcCCcEEECC
Confidence 43 57777 2111211 13556799988763
No 131
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=84.18 E-value=11 Score=33.80 Aligned_cols=89 Identities=20% Similarity=0.207 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHHcCCCceEEEEeCCC-CCC-CHHHHHHHHhcc-CCccEE-ecC
Q 006006 41 DDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHM-PDM-DGFKLLEHIGLE-MDLPVI-TDG 113 (665)
Q Consensus 41 DD~~ire~Lk~lL~~~gy~V~tA---sngeEALelLre~k~~PDLVIlDI~M-P~m-DGlELLe~Ir~~-~~IPVI-a~s 113 (665)
-++.-...+..+|++.|++|... ...++..+.+++.. ||+|.+...+ +.. ...++++.+|+. +++++| +-.
T Consensus 12 ~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~--pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 12 VHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAER--PDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp STSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTT--CSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred chhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCC--CcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 34677888999999999998765 34577778888776 9999998844 333 345667777654 667777 222
Q ss_pred c-hHHHHHHHH--cCCCeEEe
Q 006006 114 R-VSAVMRGIR--HGACDYLI 131 (665)
Q Consensus 114 d-~e~a~kALe--~GA~DYLl 131 (665)
. .....+.++ .|+|..+.
T Consensus 90 ~~t~~~~~~l~~~~~~D~vv~ 110 (121)
T PF02310_consen 90 HATADPEEILREYPGIDYVVR 110 (121)
T ss_dssp SSGHHHHHHHHHHHTSEEEEE
T ss_pred chhcChHHHhccCcCcceecC
Confidence 2 222233444 56555444
No 132
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=83.09 E-value=19 Score=34.46 Aligned_cols=101 Identities=16% Similarity=0.052 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCH-HHHHHHHhcc--CCccEE--ec
Q 006006 42 DITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIGLE--MDLPVI--TD 112 (665)
Q Consensus 42 D~~ire~Lk~lL~~~gy~V~---tAsngeEALelLre~k~~PDLVIlDI~MP~-mDG-lELLe~Ir~~--~~IPVI--a~ 112 (665)
|..=...+..+|+..||+|. .....++.++.+.++. +|+|.+-..|.. +.. -++.+.+++. .+++|+ ..
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~--adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~ 89 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETD--ADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGN 89 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECC
Confidence 34445677888888899986 4567789999988876 999999887754 333 3455666543 367776 11
Q ss_pred -----Cch-HHHHHHHHcCCCeEEeCCCCHHHHHHHHH
Q 006006 113 -----GRV-SAVMRGIRHGACDYLIKPIREEELKNIWQ 144 (665)
Q Consensus 113 -----sd~-e~a~kALe~GA~DYLlKPv~~eEL~~aLq 144 (665)
.+. +...+..++|++......-+++++...++
T Consensus 90 ~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 90 LVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 122 23455778999998887778888776554
No 133
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.66 E-value=10 Score=33.71 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=56.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE-
Q 006006 35 RVLVVDDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI- 110 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~~gy~V~tA---sngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI- 110 (665)
+||||-..+.....++..+++.++..... .........+...-..+|+||+=...-.-+-...+++.-+..++|++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 58999998888889999999998887766 22222222233222247999886665555555555555556788988
Q ss_pred ec-CchHHHHHHH
Q 006006 111 TD-GRVSAVMRGI 122 (665)
Q Consensus 111 a~-sd~e~a~kAL 122 (665)
.. .......+++
T Consensus 81 ~~~~~~~~l~~~l 93 (97)
T PF10087_consen 81 SRSRGVSSLERAL 93 (97)
T ss_pred ECCCCHHHHHHHH
Confidence 33 3444444444
No 134
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=82.05 E-value=1.4 Score=46.00 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=34.4
Q ss_pred HHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 247 ILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 247 ILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
|.+.+.++++++.+||.++|.+ ..||.+.||+. |+||..
T Consensus 206 I~~~l~~~~ls~~~lA~~~giS-~r~L~r~Fk~~-G~T~~~ 244 (302)
T PRK09685 206 IDQSIQEEILRPEWIAGELGIS-VRSLYRLFAEQ-GLVVAQ 244 (302)
T ss_pred HHHhcCCCCCCHHHHHHHHCCC-HHHHHHHHHHc-CCCHHH
Confidence 5677888999999999999876 79999999985 999974
No 135
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=80.63 E-value=32 Score=30.61 Aligned_cols=104 Identities=19% Similarity=0.300 Sum_probs=59.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHH-HHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE
Q 006006 34 LRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDIL-RERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~-~gy~V~-tAsngeEALelL-re~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI 110 (665)
|||.||-=-..-+..+..++.. ..+.+. .+....+..+.+ +... .. +..|+ -++++. ...++.+|
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~--~~-~~~~~-------~~ll~~--~~~D~V~I 68 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG--IP-VYTDL-------EELLAD--EDVDAVII 68 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT--SE-EESSH-------HHHHHH--TTESEEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc--cc-chhHH-------HHHHHh--hcCCEEEE
Confidence 4666666665656666666655 344443 344333333333 2222 33 33331 112211 13444555
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHHH
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVRK 149 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv--~~eEL~~aLq~Vlrk 149 (665)
.....+.+.++++.|..=|+-||+ +.+++.+.++.+-+.
T Consensus 69 ~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 69 ATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp ESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred ecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 344667889999999999999998 888888877766443
No 136
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=80.59 E-value=20 Score=35.54 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=47.3
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCCC--------CHHHHHHHHhccCC-ccEE--ecCchHHHHHHHHcCCCeEE
Q 006006 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDM--------DGFKLLEHIGLEMD-LPVI--TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 62 tAsngeEALelLre~k~~PDLVIlDI~MP~m--------DGlELLe~Ir~~~~-IPVI--a~sd~e~a~kALe~GA~DYL 130 (665)
.+.+.+++.+..+. .+|.|.+.--.|.. .|++.++++++... +||+ +--+.+.+.++++.||+.+.
T Consensus 110 ~~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~ 186 (212)
T PRK00043 110 STHTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVA 186 (212)
T ss_pred eCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEE
Confidence 45566677666543 38999987555532 35888888865544 8888 33467788899999999987
Q ss_pred e
Q 006006 131 I 131 (665)
Q Consensus 131 l 131 (665)
.
T Consensus 187 ~ 187 (212)
T PRK00043 187 V 187 (212)
T ss_pred E
Confidence 5
No 137
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=80.35 E-value=33 Score=33.49 Aligned_cols=113 Identities=17% Similarity=0.052 Sum_probs=74.8
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHH----HHH
Q 006006 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKL----LEH 100 (665)
Q Consensus 32 ~girVLIV----DDD~~ire~Lk~lL~~~gy~V~---tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlEL----Le~ 100 (665)
++.||+|. |-|..-.+.+.+.|...||+|. ...+.+|+.+..-++. .|+|.+-..- ....++ .+.
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~d--v~vIgvSsl~--g~h~~l~~~lve~ 86 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEED--VDVIGVSSLD--GGHLTLVPGLVEA 86 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcC--CCEEEEEecc--chHHHHHHHHHHH
Confidence 34566664 7777778889999999999986 5678899999886665 8988876532 223344 444
Q ss_pred Hhcc--CCccEE--ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 101 IGLE--MDLPVI--TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 101 Ir~~--~~IPVI--a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
+++. .++.++ ..-..+...+-.++|++.++.--....+...-+.+.+.
T Consensus 87 lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 87 LREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred HHHhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHH
Confidence 4443 456644 22233334455679999999876777776655554443
No 138
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=79.95 E-value=1.3 Score=47.38 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=30.1
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
..++++++|.++|++ .+||.+.||+.+|+||+.
T Consensus 233 ~~~sl~~lA~~~~~S-~~~l~r~fk~~~g~s~~~ 265 (322)
T PRK09393 233 EPHTVASLAARAAMS-PRTFLRRFEAATGMTPAE 265 (322)
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHCcCHHH
Confidence 468999999999987 799999999999999974
No 139
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=79.71 E-value=26 Score=35.46 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=51.9
Q ss_pred HHHHh-CCCEE-EEECCHHHHHHHHHHcCCCceEEEEeCC-------CCCCCHHHHHHHHhccCCccEE---ecCchHHH
Q 006006 51 QMLRR-CLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH-------MPDMDGFKLLEHIGLEMDLPVI---TDGRVSAV 118 (665)
Q Consensus 51 ~lL~~-~gy~V-~tAsngeEALelLre~k~~PDLVIlDI~-------MP~mDGlELLe~Ir~~~~IPVI---a~sd~e~a 118 (665)
+.+++ .+..+ ..+.+.+++....+ .. +|+|.+... ......++++++++....+|+| .-.+.+.+
T Consensus 112 ~~~~~~~~i~vi~~v~t~ee~~~a~~-~G--~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~ 188 (221)
T PRK01130 112 KRIKEYPGQLLMADCSTLEEGLAAQK-LG--FDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQA 188 (221)
T ss_pred HHHHhCCCCeEEEeCCCHHHHHHHHH-cC--CCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 33344 34443 46677888765443 33 898866421 1222347888888876689998 34577888
Q ss_pred HHHHHcCCCeEEeC
Q 006006 119 MRGIRHGACDYLIK 132 (665)
Q Consensus 119 ~kALe~GA~DYLlK 132 (665)
.++++.||+..+.=
T Consensus 189 ~~~l~~GadgV~iG 202 (221)
T PRK01130 189 KKALELGAHAVVVG 202 (221)
T ss_pred HHHHHCCCCEEEEc
Confidence 99999999988764
No 140
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=79.23 E-value=15 Score=37.71 Aligned_cols=100 Identities=12% Similarity=0.153 Sum_probs=70.2
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCC-C-CHHHHHHHHh
Q 006006 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-M-DGFKLLEHIG 102 (665)
Q Consensus 32 ~girVLIV----DDD~~ire~Lk~lL~~~gy~V~tA---sngeEALelLre~k~~PDLVIlDI~MP~-m-DGlELLe~Ir 102 (665)
..-+|++. |.|.+=...+..+|+..||+|.-. -..++.++.+.+.+ ||+|.+-..|+. + +-.+++++++
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~--~~~V~lS~~~~~~~~~~~~~i~~L~ 164 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHK--ADIIGLSGLLVPSLDEMVEVAEEMN 164 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEccchhccHHHHHHHHHHHH
Confidence 45688888 888888899999999999999754 35788899998887 999999988864 2 2345666675
Q ss_pred cc-CCccEE-e--cCchHHHHH---HHHcCCCeEEeCC
Q 006006 103 LE-MDLPVI-T--DGRVSAVMR---GIRHGACDYLIKP 133 (665)
Q Consensus 103 ~~-~~IPVI-a--~sd~e~a~k---ALe~GA~DYLlKP 133 (665)
+. .+++|+ + .-+.+.+.+ +-..|||.|-.-.
T Consensus 165 ~~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da 202 (213)
T cd02069 165 RRGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred hcCCCCeEEEEChhcCHHHHhhhhccccCCCceEecCH
Confidence 43 467776 2 223333322 2346998887643
No 141
>PRK13503 transcriptional activator RhaS; Provisional
Probab=78.23 E-value=1.7 Score=44.75 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=29.4
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
..+|++++|+++|++ .+||++.||+.+|+||+.
T Consensus 186 ~~~tl~~lA~~~~lS-~~~l~r~Fk~~~G~S~~~ 218 (278)
T PRK13503 186 EEVNWEALADQFSLS-LRTLHRQLKQQTGLTPQR 218 (278)
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHhCcCHHH
Confidence 478999999999865 689999999999999984
No 142
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein.
Probab=77.88 E-value=2.1 Score=35.13 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=28.6
Q ss_pred CCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 255 GLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 255 ~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
++++.+||.++|. +..+|.+.|++.+|++|+.
T Consensus 1 ~~~~~~la~~~~~-s~~~l~~~f~~~~~~s~~~ 32 (84)
T smart00342 1 PLTLEDLAEALGM-SPRHLQRLFKKETGTTPKQ 32 (84)
T ss_pred CCCHHHHHHHhCC-CHHHHHHHHHHHhCcCHHH
Confidence 3689999999998 5899999999999999974
No 143
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=76.56 E-value=23 Score=42.79 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=54.4
Q ss_pred cEEEEEeCCH-HH-----HHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCC
Q 006006 34 LRVLVVDDDI-TC-----LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMD 106 (665)
Q Consensus 34 irVLIVDDD~-~i-----re~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir-~~~~ 106 (665)
|+|+|||++- .. .+.|.+-|+..++.|..+.+..+++..++... ..+.|++|+.-. ..++++.++ ....
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~ 76 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNP-RICGVIFDWDEY---SLDLCSDINQLNEY 76 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhccc-ceeEEEEecccc---hHHHHHHHHHhCCC
Confidence 5788888873 11 34555666777999999999999999998543 689999996332 255788876 4578
Q ss_pred ccEE
Q 006006 107 LPVI 110 (665)
Q Consensus 107 IPVI 110 (665)
+||+
T Consensus 77 ~Pv~ 80 (713)
T PRK15399 77 LPLY 80 (713)
T ss_pred CCEE
Confidence 9998
No 144
>COG2207 AraC AraC-type DNA-binding domain-containing proteins [Transcription]
Probab=76.20 E-value=3.7 Score=36.33 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=29.2
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.++++.+||.++|. +..||.+.||+.+|++|.
T Consensus 35 ~~~~l~~la~~~g~-S~~~l~r~f~~~~g~s~~ 66 (127)
T COG2207 35 EPLTLEDLARRLGM-SRRTLSRLFKKETGTSPS 66 (127)
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHHHHHHCCCHH
Confidence 44899999999998 679999999999999997
No 145
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=75.64 E-value=2.6 Score=43.68 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=29.2
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
..+++.++|+++|+ +..||++.||+.+|+||+.
T Consensus 201 ~~~sl~~lA~~~~~-S~~~l~r~Fk~~~G~t~~~ 233 (287)
T TIGR02297 201 QHLRLPEYADRLGI-SESRLNDICRRFSALSPKR 233 (287)
T ss_pred cCCCHHHHHHHHCC-CHHHHHHHHHHHhCCCHHH
Confidence 36899999999986 4689999999999999974
No 146
>PRK15340 transcriptional regulator InvF; Provisional
Probab=75.39 E-value=3.3 Score=42.77 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=30.1
Q ss_pred CCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 253 VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 253 ~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
....+++++|.++|++ ..||++.||+++|+||+.
T Consensus 123 ~~~~sleeLA~~~gvS-~r~f~RlFk~~~G~tpk~ 156 (216)
T PRK15340 123 TSGNTMRMLGEDYGVS-YTHFRRLCSRALGGKAKS 156 (216)
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHHHHHCcCHHH
Confidence 3678999999999975 689999999999999984
No 147
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=74.46 E-value=17 Score=36.56 Aligned_cols=95 Identities=15% Similarity=0.060 Sum_probs=63.3
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCCC-C-HHHHHHHHhcc
Q 006006 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM-D-GFKLLEHIGLE 104 (665)
Q Consensus 34 irVLIV----DDD~~ire~Lk~lL~~~gy~V~t---AsngeEALelLre~k~~PDLVIlDI~MP~m-D-GlELLe~Ir~~ 104 (665)
-+|++. |.|.+=...+..+|+..||+|.- -...++.++.+++.. ||+|.+-..|... . -.++++.+++.
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~--pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEK--PLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEccccccCHHHHHHHHHHHHHc
Confidence 355554 55666777788888888999974 345688899998877 9999999877642 2 23456666654
Q ss_pred ---CCccEE-ecCchHHHHHHHHcCCCeEEe
Q 006006 105 ---MDLPVI-TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 105 ---~~IPVI-a~sd~e~a~kALe~GA~DYLl 131 (665)
.+++|+ +-.-+. ..-+-+.|||.|-.
T Consensus 163 ~~~~~v~i~vGG~~~~-~~~~~~~gad~~~~ 192 (197)
T TIGR02370 163 GYRDSVKFMVGGAPVT-QDWADKIGADVYGE 192 (197)
T ss_pred CCCCCCEEEEEChhcC-HHHHHHhCCcEEeC
Confidence 346766 222121 12355779999864
No 148
>PRK15320 transcriptional activator SprB; Provisional
Probab=73.99 E-value=8.5 Score=39.68 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=92.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCccEE-
Q 006006 35 RVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI- 110 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~~--gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir-~~~~IPVI- 110 (665)
+|+|..|.-...-.+..++++. +..|.+|..-...+..++.. ||.+++=---|..--+ +...++ .-++-||+
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~~---p~a~lil~l~p~eh~~-lf~~l~~~l~~~~v~v 78 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSDM---PDAGLILALNPHEHVY-LFHALLTRLQNRKVLV 78 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhhC---CCceEEEeeCchhHHH-HHHHHHHHcCCCceEE
Confidence 6788888888888888988875 56778888888888888764 6765553333443322 222232 22444444
Q ss_pred ecCchHHHHHHH--HcCCCeEEeCCCCHHHHH-------------HHHHHHHHHhhhcccccc----ccCCcc-------
Q 006006 111 TDGRVSAVMRGI--RHGACDYLIKPIREEELK-------------NIWQHVVRKRWNENKEHE----NSGSLE------- 164 (665)
Q Consensus 111 a~sd~e~a~kAL--e~GA~DYLlKPv~~eEL~-------------~aLq~Vlrk~~~~~k~~~----~~~~le------- 164 (665)
..+..-+..++. -.|+.+|++|- ||. ++|-+...+-........ .....+
T Consensus 79 v~d~l~~~dr~vl~~~g~~~~~l~~----el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (251)
T PRK15320 79 VADRLYYIDRCVLQYFGVMDYVLKD----ELSCAIRSEREKLRLPEAWLRFCHRPQKKTVAATYAFNAGETPEEVLFNIN 154 (251)
T ss_pred EecceeehhhhhhhhhcchhHHHHH----HHHHHhcccccccCCcHHHHHHhcCccccccceeeeccCCCChHHHhhhcc
Confidence 222233333332 35888888873 333 344333322111000000 000000
Q ss_pred ----ccccCCCChhhHHHHHhhccCCchhHHHHHhhcccccc
Q 006006 165 ----ETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEE 202 (665)
Q Consensus 165 ----~~~~~~Lt~rEie~Lesl~eGse~~lka~~k~Is~k~~ 202 (665)
-.....++.+|++++..+.+|..+..++....++.++.
T Consensus 155 ~~~~~~~~~~LSdREIEVL~LLAkG~SNKEIAekL~LS~KTV 196 (251)
T PRK15320 155 QYAWWNLPPGVTQAKYALLILLSSGHPAIELAKKFGLGTKTV 196 (251)
T ss_pred ceeeecCCCCCCHHHHHHHHHHHcCCCHHHHHHHhccchhhH
Confidence 01234678999999999999999988888887766554
No 149
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=73.11 E-value=26 Score=32.21 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHH-cCCCceEEEEeCCCCCC-CHHHHHHHHhcc-CCccEE-ecCchHH
Q 006006 44 TCLRILEQMLRRCLYNVTT--CSQAAVALDILRE-RKGCFDVVLSDVHMPDM-DGFKLLEHIGLE-MDLPVI-TDGRVSA 117 (665)
Q Consensus 44 ~ire~Lk~lL~~~gy~V~t--AsngeEALelLre-~k~~PDLVIlDI~MP~m-DGlELLe~Ir~~-~~IPVI-a~sd~e~ 117 (665)
+-...+..+|++.++.+.. ....++.++.+.. .. ||+|.+-...+.. ...++++.+|+. ++++|| +-.....
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~ 80 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLK--PDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATF 80 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHhcC--CCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhh
Confidence 4456778888887877643 3455667777765 44 9999999855543 456677888754 667777 2111111
Q ss_pred -HHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006006 118 -VMRGIRHGACDYLIKPIREEELKNIWQHV 146 (665)
Q Consensus 118 -a~kALe~GA~DYLlKPv~~eEL~~aLq~V 146 (665)
....+..-..||+.+---...+.+.++.+
T Consensus 81 ~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 81 FPEEILEEPGVDFVVIGEGEETFLKLLEEL 110 (127)
T ss_pred CHHHHhcCCCCCEEEECCcHHHHHHHHHHH
Confidence 12224445568888765555555555554
No 150
>PRK13502 transcriptional activator RhaR; Provisional
Probab=72.92 E-value=3.1 Score=43.17 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=28.9
Q ss_pred CCCHHHHHhhhcccchhHHHHHHHHHhCCCCCCC
Q 006006 255 GLTRENVASHLQEINLQKFRLYLKRLNGVSQQGG 288 (665)
Q Consensus 255 ~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~~ 288 (665)
.++++++|.++|. +..||++.||+++|+||+.-
T Consensus 192 ~~~~~~lA~~~~i-S~~~L~r~fk~~~G~t~~~y 224 (282)
T PRK13502 192 PFALDAFCQQEQC-SERVLRQQFRAQTGMTINQY 224 (282)
T ss_pred CCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHHH
Confidence 4889999999986 46999999999999999843
No 151
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=72.82 E-value=37 Score=34.34 Aligned_cols=69 Identities=19% Similarity=0.302 Sum_probs=47.6
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCC-------CCCCCHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEE
Q 006006 61 TTCSQAAVALDILRERKGCFDVVLSDVH-------MPDMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 61 ~tAsngeEALelLre~k~~PDLVIlDI~-------MP~mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYL 130 (665)
..+.+.+++....+. .+|+|.+... ......+++++.+++...+|++ .-.+.+.+.++++.||+..+
T Consensus 128 v~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~ 204 (219)
T cd04729 128 ADISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVV 204 (219)
T ss_pred EECCCHHHHHHHHHc---CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence 456778888665543 3898865321 1122357888888766679998 34567889999999999887
Q ss_pred eC
Q 006006 131 IK 132 (665)
Q Consensus 131 lK 132 (665)
.-
T Consensus 205 vG 206 (219)
T cd04729 205 VG 206 (219)
T ss_pred Ec
Confidence 64
No 152
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=72.65 E-value=27 Score=42.16 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=53.9
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCC
Q 006006 34 LRVLVVDDDI-T-----CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMD 106 (665)
Q Consensus 34 irVLIVDDD~-~-----ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir-~~~~ 106 (665)
|+|+||+++. . -.+.|..-|+..+++|..+.+..+++..++... ..+.|++|+.- . ..++++.++ ....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 76 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNA-RLCGVIFDWDK--Y-NLELCEEISKMNEN 76 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccc-ceeEEEEecch--h-hHHHHHHHHHhCCC
Confidence 5788888772 1 244556667777999999999999999998553 68999999633 2 245788776 4578
Q ss_pred ccEE
Q 006006 107 LPVI 110 (665)
Q Consensus 107 IPVI 110 (665)
+||+
T Consensus 77 ~Pv~ 80 (714)
T PRK15400 77 LPLY 80 (714)
T ss_pred CCEE
Confidence 9998
No 153
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=71.71 E-value=38 Score=40.98 Aligned_cols=115 Identities=12% Similarity=-0.023 Sum_probs=77.9
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhc
Q 006006 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (665)
Q Consensus 33 girVLIV----DDD~~ire~Lk~lL~~~gy~V~t---AsngeEALelLre~k~~PDLVIlDI~MP~m--DGlELLe~Ir~ 103 (665)
..+|+|. |.+..-...+..+|...||+|.. ..+.+++.+.+.+.. +|+|++-..+... ..-++++.|++
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~--a~ivvlcs~d~~~~e~~~~l~~~Lk~ 659 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEND--VHVVGVSSLAAGHKTLVPALIEALKK 659 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcC--CCEEEEeccchhhHHHHHHHHHHHHh
Confidence 3466654 44555566677788888999852 346789999888776 9999987666432 34466777765
Q ss_pred c--CCccEE-e-cCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 104 E--MDLPVI-T-DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 104 ~--~~IPVI-a-~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
. .+++|+ + .--.+......+.|+++|+..-.+..++...+++.+..
T Consensus 660 ~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~~ 709 (714)
T PRK09426 660 LGREDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLSA 709 (714)
T ss_pred cCCCCcEEEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHHH
Confidence 5 346666 3 21222334566799999999989998888877776643
No 154
>PRK15121 right oriC-binding transcriptional activator; Provisional
Probab=71.28 E-value=3.2 Score=43.74 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=29.6
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
..+++++||.++|++- .||.|.||+.+|+||..
T Consensus 20 ~~~~l~~lA~~~~~S~-~~l~r~F~~~~g~s~~~ 52 (289)
T PRK15121 20 QPLSLDNVAAKAGYSK-WHLQRMFKDVTGHAIGA 52 (289)
T ss_pred CCCCHHHHHHHHCcCH-HHHHHHHHHHHCcCHHH
Confidence 4699999999999865 69999999999999984
No 155
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=70.50 E-value=51 Score=32.99 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=64.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~g--y~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI 110 (665)
.++++|+.+.+. ...+.+++...+ ..|......++..+++.. .|++|.-... +.-|..+++.+. ..+|+|
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~-e~~~~~~~Ea~a--~G~Pvi 280 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRF-EGFPMVLLEAMA--FGLPVI 280 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCccc-cccCHHHHHHHH--cCCCEE
Confidence 456666665432 233334444432 233333333444455442 5787776554 223566777764 467888
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
+.+......+.+..+..+++.++.+.+++.+.+.+++.
T Consensus 281 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 281 SFDCPTGPSEIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred EecCCCchHhhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 54433334445566778999999999999999998864
No 156
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=70.11 E-value=31 Score=36.90 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=46.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
.|++++=-.. +.=|+.++|.+. ..+|||+.+......+.+..|..+++..|-+.++|.+++..++...
T Consensus 258 ~d~~v~~s~~-Egf~~~~lEAma--~G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 258 VSALLLTSKF-EGFPMTLLEAMS--YGIPCISSDCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred CcEEEECCcc-cCcChHHHHHHH--cCCCEEEeCCCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 3555542221 222666777664 4689996542344556778899999999999999999999886654
No 157
>PRK10130 transcriptional regulator EutR; Provisional
Probab=69.88 E-value=3.9 Score=44.95 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=31.7
Q ss_pred HHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 248 LELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 248 LeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
.+.+..+ +++.+||.++|. +..|+.+.||+++|+||..
T Consensus 250 ~~~~~~~-ltv~~lA~~~gv-S~r~L~r~Fk~~~G~sp~~ 287 (350)
T PRK10130 250 LENMSEP-VTVLDLCNQLHV-SRRTLQNAFHAILGIGPNA 287 (350)
T ss_pred HhhhcCC-CCHHHHHHHHCC-CHHHHHHHHHHHHCcCHHH
Confidence 3445555 999999999975 5689999999999999984
No 158
>PRK13500 transcriptional activator RhaR; Provisional
Probab=69.03 E-value=4.2 Score=43.35 Aligned_cols=32 Identities=6% Similarity=0.145 Sum_probs=28.8
Q ss_pred CCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 255 GLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 255 ~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
.++++++|.++|+ +.+||++.||+.+|+||..
T Consensus 222 ~isl~~lA~~~~i-S~~~L~r~FK~~tG~T~~~ 253 (312)
T PRK13500 222 PFALDKFCDEASC-SERVLRQQFRQQTGMTINQ 253 (312)
T ss_pred CCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 4899999999976 5699999999999999984
No 159
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=68.52 E-value=25 Score=33.67 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=70.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHH-----HHHhccCC
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLL-----EHIGLEMD 106 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELL-----e~Ir~~~~ 106 (665)
.+-+.+.||-+........++|...+.+|+.-....+ +-... +|.+|+.+-.+-.+-+.+- +.+. ..+
T Consensus 10 ~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~----lp~~h--YD~~Ll~vavtfr~n~tm~~~~l~~Al~-mtd 82 (140)
T COG4999 10 AGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSA----LPPAH--YDMMLLGVAVTFRENLTMQHERLAKALS-MTD 82 (140)
T ss_pred ccceeEEecCccHHHHHHHHHHhcCCceEEecccccc----cChhh--hceeeecccccccCCchHHHHHHHHHHh-hhc
Confidence 4568999999999999999999988888864332222 21223 8999999977765544433 2222 233
Q ss_pred ccEEecC--chHHHHHHHHcCCCeEEeCCCCHHHHHHHH
Q 006006 107 LPVITDG--RVSAVMRGIRHGACDYLIKPIREEELKNIW 143 (665)
Q Consensus 107 IPVIa~s--d~e~a~kALe~GA~DYLlKPv~~eEL~~aL 143 (665)
..|++-. ..-.+.+..+.|+.++|+||++...|.-.+
T Consensus 83 ~vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 83 FVILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred ceEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 3344322 233455677899999999999999887643
No 160
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=67.64 E-value=3.6 Score=42.62 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=27.3
Q ss_pred CCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 256 LTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 256 LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
.++.++|.++|+ ++.||.+.||+.+|+||+.
T Consensus 189 ~~l~~lA~~~~~-s~~~l~r~fk~~~G~t~~~ 219 (278)
T PRK10296 189 SALENMVRLSGK-SQEYLTRATRRYYGKTPMQ 219 (278)
T ss_pred hhHHHHHHHhCC-CHHHHHHHHHHHHCcCHHH
Confidence 378899988876 6799999999999999984
No 161
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=67.57 E-value=6.2 Score=42.07 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=29.7
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
+.+++.+||.++|++ ..||++.||+.+|+||..
T Consensus 206 ~~~tl~~lA~~~~~S-~~~l~r~Fk~~~G~t~~~ 238 (302)
T PRK10371 206 QALTINDVAEHVKLN-ANYAMGIFQRVMQLTMKQ 238 (302)
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHhCCCHHH
Confidence 679999999999765 589999999999999974
No 162
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=67.02 E-value=8.6 Score=39.15 Aligned_cols=74 Identities=19% Similarity=0.296 Sum_probs=52.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCC--CCCCC--HHHHHHHHhccCCcc
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMD--GFKLLEHIGLEMDLP 108 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~--MP~mD--GlELLe~Ir~~~~IP 108 (665)
+++||+||...-+--.|.+++...+..|.+..+....++.++... ||.|++-=- -|... -+++++++ ...+|
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~--pd~iviSPGPG~P~d~G~~~~~i~~~--~~~~P 76 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALK--PDAIVISPGPGTPKDAGISLELIRRF--AGRIP 76 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcC--CCEEEEcCCCCChHHcchHHHHHHHh--cCCCC
Confidence 368999999999999999999999888887766644444566555 999998632 12222 34555554 35688
Q ss_pred EE
Q 006006 109 VI 110 (665)
Q Consensus 109 VI 110 (665)
|+
T Consensus 77 iL 78 (191)
T COG0512 77 IL 78 (191)
T ss_pred EE
Confidence 88
No 163
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=66.75 E-value=90 Score=29.11 Aligned_cols=110 Identities=18% Similarity=0.271 Sum_probs=70.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECC--HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQ--AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy--~V~tAsn--geEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~I 107 (665)
..++++|+.+..... .+..+.+..+. .+..+.. .++..++++. .|++++=... +.-|..+++.+. ..+
T Consensus 46 ~~~~l~i~G~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~--~g~ 117 (172)
T PF00534_consen 46 PNYKLVIVGDGEYKK-ELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMA--CGC 117 (172)
T ss_dssp TTEEEEEESHCCHHH-HHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHH--TT-
T ss_pred CCeEEEEEccccccc-cccccccccccccccccccccccccccccccc----ceeccccccc-cccccccccccc--ccc
Confidence 347888887433322 24444444332 3443333 3466666654 4777775544 555667777764 467
Q ss_pred cEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 108 PVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 108 PVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
|+|+.. .....+.+..+..+++..+.+.++|.+++.+++...
T Consensus 118 pvI~~~-~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 118 PVIASD-IGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp EEEEES-STHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred ceeecc-ccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 888544 444557788888999999999999999999988764
No 164
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=65.38 E-value=46 Score=38.47 Aligned_cols=98 Identities=17% Similarity=0.241 Sum_probs=55.8
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHHcCCCceEEEEeC--------------CCC
Q 006006 32 AGLRVLVVDD----DITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDV--------------HMP 90 (665)
Q Consensus 32 ~girVLIVDD----D~~ire~Lk~lL~~~-gy~V~--tAsngeEALelLre~k~~PDLVIlDI--------------~MP 90 (665)
++..++.+|- .....+.++++-+.. ...|. .+.+.++|..+++.. .|.|.+.+ -.|
T Consensus 252 ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aG---ad~I~vg~g~Gs~~~t~~~~~~g~p 328 (495)
T PTZ00314 252 AGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAG---ADGLRIGMGSGSICITQEVCAVGRP 328 (495)
T ss_pred CCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcC---CCEEEECCcCCcccccchhccCCCC
Confidence 4566777764 233334444444332 22332 356667777766543 68776543 223
Q ss_pred CCCHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEeC
Q 006006 91 DMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 91 ~mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlK 132 (665)
..+-+.-+.++.+...+|+| .......+.+|+.+||+....=
T Consensus 329 ~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 329 QASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred hHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 33332223333334568999 3567888999999999988764
No 165
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=65.35 E-value=45 Score=36.07 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=54.9
Q ss_pred HHHHhCCCEE-EEECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHHHHHhccCCccEE---ecCchHHHHHH
Q 006006 51 QMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRG 121 (665)
Q Consensus 51 ~lL~~~gy~V-~tAsngeEALelLre~k~~PDLVIlDI~MP-----~mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kA 121 (665)
+.++..+..| ..+.+.++|..+.+. .+|.|++.-.-. ...-+++++++++..++||| .-.+.+.+.++
T Consensus 103 ~~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~a 179 (307)
T TIGR03151 103 PRLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAA 179 (307)
T ss_pred HHHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHH
Confidence 3444445544 467888888776654 389998854321 22358889998876789999 35577778899
Q ss_pred HHcCCCeEEeC
Q 006006 122 IRHGACDYLIK 132 (665)
Q Consensus 122 Le~GA~DYLlK 132 (665)
+..||++...=
T Consensus 180 l~~GA~gV~iG 190 (307)
T TIGR03151 180 FALGAEAVQMG 190 (307)
T ss_pred HHcCCCEeecc
Confidence 99999987763
No 166
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=65.14 E-value=61 Score=28.75 Aligned_cols=91 Identities=18% Similarity=0.077 Sum_probs=56.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECC-HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE-
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsn-geEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI- 110 (665)
.+|++||.++...+.+ ...++.+....- -.+.|+.+.-.. .+.||+...- +..-+.++..+++ .+..++|
T Consensus 22 ~~vvvid~d~~~~~~~----~~~~~~~i~gd~~~~~~l~~a~i~~--a~~vv~~~~~-d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 22 IDVVVIDRDPERVEEL----REEGVEVIYGDATDPEVLERAGIEK--ADAVVILTDD-DEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp SEEEEEESSHHHHHHH----HHTTSEEEES-TTSHHHHHHTTGGC--ESEEEEESSS-HHHHHHHHHHHHHHTTTSEEEE
T ss_pred CEEEEEECCcHHHHHH----HhcccccccccchhhhHHhhcCccc--cCEEEEccCC-HHHHHHHHHHHHHHCCCCeEEE
Confidence 6899999998775443 333566544322 245555554444 8888887652 2344566666765 4667777
Q ss_pred ecCchHHHHHHHHcCCCeEEe
Q 006006 111 TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLl 131 (665)
...+.++....-+.||+..+.
T Consensus 95 ~~~~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 95 RVNDPENAELLRQAGADHVIS 115 (116)
T ss_dssp EESSHHHHHHHHHTT-SEEEE
T ss_pred EECCHHHHHHHHHCCcCEEEC
Confidence 455667777777889987654
No 167
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=64.92 E-value=62 Score=32.79 Aligned_cols=65 Identities=15% Similarity=0.313 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCC-CH--HHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 65 QAAVALDILRERKGCFD-VVLSDVHMPDM-DG--FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 65 ngeEALelLre~k~~PD-LVIlDI~MP~m-DG--lELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
+..+..+.+.+.. .| ++++|+.--++ .| +++++++++...+|+| .-.+.+.+.++++.||++.+.
T Consensus 146 ~~~~~~~~~~~~g--~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEELG--LEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHhCC--CCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 3345555555543 66 77788854332 22 6888888777789998 356777788888999999876
No 168
>PRK13501 transcriptional activator RhaR; Provisional
Probab=64.67 E-value=5.7 Score=41.54 Aligned_cols=33 Identities=9% Similarity=0.091 Sum_probs=29.1
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
..+++.++|.++|+ +..||++.||+.+|+||..
T Consensus 191 e~~sl~~lA~~~~l-S~~~l~r~Fk~~~G~T~~q 223 (290)
T PRK13501 191 AYFDMADFCHKNQL-VERSLKQLFRQQTGMSISH 223 (290)
T ss_pred cCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 45799999999965 5699999999999999983
No 169
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=64.65 E-value=23 Score=36.19 Aligned_cols=84 Identities=20% Similarity=0.225 Sum_probs=57.5
Q ss_pred hHHHHHHhcCCC-----CCccee-eeeccCCCCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHH
Q 006006 3 ALQRIVQSSGGS-----GYGSSR-AADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDIL 73 (665)
Q Consensus 3 i~~~~V~~mgGs-----g~Gs~f-~~~~~~~d~fP~girVLIVDDD~~ire~Lk~lL~~~gy--~V~-tAsngeEALelL 73 (665)
+.+.+|.+++.. |.+..| +.-+ ....|.+-+|.-+|-++...+..++.++..++ .|. ...++.+.+..+
T Consensus 36 lL~~l~~~~~~k~vLEIGt~~GySal~l--a~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l 113 (205)
T PF01596_consen 36 LLQMLVRLTRPKRVLEIGTFTGYSALWL--AEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPEL 113 (205)
T ss_dssp HHHHHHHHHT-SEEEEESTTTSHHHHHH--HHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHH
T ss_pred HHHHHHHhcCCceEEEeccccccHHHHH--HHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHH
Confidence 456677777762 444333 2222 23356667999999999999999999998765 343 567888888877
Q ss_pred HHcC--CCceEEEEeCC
Q 006006 74 RERK--GCFDVVLSDVH 88 (665)
Q Consensus 74 re~k--~~PDLVIlDI~ 88 (665)
.... ..+|+|++|..
T Consensus 114 ~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 114 ANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp HHTTTTTSEEEEEEEST
T ss_pred HhccCCCceeEEEEccc
Confidence 6432 25999999984
No 170
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=63.78 E-value=80 Score=35.39 Aligned_cols=107 Identities=20% Similarity=0.205 Sum_probs=65.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEec
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITD 112 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~ 112 (665)
.++++||.|.+. ++.|+++.........-.-..++..+.+.. .|++++=-. .+.=|+.++|.+. ..+|||+.
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS~-~E~~g~~vlEAmA--~G~PVI~s 361 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPSE-SETLGFVVLEAMA--SGVPVVAA 361 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECCc-ccccCcHHHHHHH--cCCCEEEc
Confidence 467778777654 344555554322222222234566666543 577775332 2333556677664 46899943
Q ss_pred CchHHHHHHHHc---CCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 113 GRVSAVMRGIRH---GACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 113 sd~e~a~kALe~---GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
+.. ...+.++. |-.+++..|-+.++|.+.+.+++.
T Consensus 362 ~~g-g~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 362 RAG-GIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred CCC-CcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 322 23445566 889999999999999999988875
No 171
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=61.28 E-value=48 Score=35.10 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=38.9
Q ss_pred CHHHHHHHHhccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 93 DGFKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 93 DGlELLe~Ir~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
-|+.+++.+. ..+|||+.+......+.+..|..+|+..|-+.++|.+++..++..
T Consensus 291 ~~~~~lEAma--~G~PvI~~~~~~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 291 FGLSLMEALS--HGLPVISYDVNYGPSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred cChHHHHHHh--CCCCEEEecCCCCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 3555666653 468888543222234556778999999999999999999988754
No 172
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=61.10 E-value=72 Score=33.68 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=64.5
Q ss_pred HHHHHHHhCCCEE--EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh---ccCCccEE--ecCchHHHHH
Q 006006 48 ILEQMLRRCLYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG---LEMDLPVI--TDGRVSAVMR 120 (665)
Q Consensus 48 ~Lk~lL~~~gy~V--~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir---~~~~IPVI--a~sd~e~a~k 120 (665)
.|++.|..-...+ ......-.+.+++.... +|.|++|.+=...|--++...++ ...-.|+| ...+...+.+
T Consensus 9 ~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G--~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r 86 (256)
T PRK10558 9 KFKAALAAKQVQIGCWSALANPITTEVLGLAG--FDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKR 86 (256)
T ss_pred HHHHHHHcCCceEEEEEcCCCcHHHHHHHhcC--CCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHH
Confidence 4666666533322 23333456667776554 99999999766666656655553 33345566 6778899999
Q ss_pred HHHcCCCeEEeCCC-CHHHHHHHHHHH
Q 006006 121 GIRHGACDYLIKPI-REEELKNIWQHV 146 (665)
Q Consensus 121 ALe~GA~DYLlKPv-~~eEL~~aLq~V 146 (665)
+++.||.+.+.-=+ +.++.+++++.+
T Consensus 87 ~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 87 LLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred HhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 99999999987544 577777666654
No 173
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=60.37 E-value=1.3e+02 Score=32.73 Aligned_cols=110 Identities=13% Similarity=0.195 Sum_probs=63.6
Q ss_pred ccEEEEEeCCH--------HHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006006 33 GLRVLVVDDDI--------TCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (665)
Q Consensus 33 girVLIVDDD~--------~ire~Lk~lL~~~gy~V~tAs--ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir 102 (665)
.++++||.|.+ ...+.++++....+..|.... +.++..+.+.. -|++++--...+.=|+-+++.+.
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAma 299 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAMA 299 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCccccccHHHHHHH
Confidence 35677776532 223344444444343443332 23455555542 57877643333333556666664
Q ss_pred ccCCccEEecCchHHHHHHHHcCCCeE-EeCCCCHHHHHHHHHHHHHH
Q 006006 103 LEMDLPVITDGRVSAVMRGIRHGACDY-LIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 103 ~~~~IPVIa~sd~e~a~kALe~GA~DY-LlKPv~~eEL~~aLq~Vlrk 149 (665)
..+|||+... ....+.+..|..+| +..|.+.++|.+++.+++..
T Consensus 300 --~G~PVI~s~~-gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 300 --AGKPVLASTK-GGITEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred --cCCCEEEeCC-CCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 4688884332 22445567788899 55789999999999888653
No 174
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=59.39 E-value=1.6e+02 Score=29.93 Aligned_cols=66 Identities=20% Similarity=0.325 Sum_probs=46.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
.|++|+-....+.-|+.+++.+. ..+|+|+... ....+-+..|..+++.++-+.++|.+++..++.
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a--~G~Pvi~~~~-~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA--AGVPVIASDI-GGMAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH--CCCCEEECCC-CCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 46666543323445667777764 4588885432 234556777888999999999999999998876
No 175
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=59.22 E-value=1.7e+02 Score=31.47 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHHcCCCceEEEEeCCCCCCCH-----HHHHHHHhccCCccEE---ec
Q 006006 43 ITCLRILEQMLRRCLYNVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDG-----FKLLEHIGLEMDLPVI---TD 112 (665)
Q Consensus 43 ~~ire~Lk~lL~~~gy~V~tA--sngeEALelLre~k~~PDLVIlDI~MP~mDG-----lELLe~Ir~~~~IPVI---a~ 112 (665)
....+.-+.++ +.||.|..+ .+..-|.++.+ -. . .+++-+--|-.+| -..++.|++..++||| +-
T Consensus 124 ~etl~Aae~Lv-~eGF~VlPY~~~D~v~a~rLed-~G--c-~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGI 198 (267)
T CHL00162 124 IGTLKAAEFLV-KKGFTVLPYINADPMLAKHLED-IG--C-ATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIIDAGI 198 (267)
T ss_pred HHHHHHHHHHH-HCCCEEeecCCCCHHHHHHHHH-cC--C-eEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEeCCc
Confidence 34445555555 459998744 34444544443 22 1 2344444443332 3567777888889998 56
Q ss_pred CchHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHHH
Q 006006 113 GRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 149 (665)
Q Consensus 113 sd~e~a~kALe~GA~DYLl-----KPv~~eEL~~aLq~Vlrk 149 (665)
...+.+.+|+++|+++.+. |--++.++.++++.+++-
T Consensus 199 gt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~A 240 (267)
T CHL00162 199 GTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQA 240 (267)
T ss_pred CCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHH
Confidence 7888999999999998764 667889999999888764
No 176
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=58.93 E-value=1.1e+02 Score=30.84 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=45.9
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 62 tAsngeEALelLre~k~~PDLVIlDI~MP~-------mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
.+.+.+++..+. +.. .|.|+++-.-.+ ...+++++++++...+||+ .-.+.+.+.++++.||++...
T Consensus 108 ~v~~~~~~~~~~-~~g--ad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~v 184 (236)
T cd04730 108 TVTSVEEARKAE-AAG--ADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQM 184 (236)
T ss_pred eCCCHHHHHHHH-HcC--CCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEE
Confidence 445666655544 333 898888653211 2457788888776678988 344557788999999998776
Q ss_pred C
Q 006006 132 K 132 (665)
Q Consensus 132 K 132 (665)
-
T Consensus 185 g 185 (236)
T cd04730 185 G 185 (236)
T ss_pred c
Confidence 4
No 177
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=58.66 E-value=70 Score=36.75 Aligned_cols=96 Identities=19% Similarity=0.256 Sum_probs=59.5
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhC-CC--EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------C
Q 006006 32 AGLRVLVVDDD----ITCLRILEQMLRRC-LY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (665)
Q Consensus 32 ~girVLIVDDD----~~ire~Lk~lL~~~-gy--~V~tAsngeEALelLre~k~~PDLVIlDI~MP~------------m 92 (665)
.+++++++|.. ..+.+.++.+-... .. .+..+.+.++|..+++.. .|.|.+-+ -|+ .
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aG---ad~i~vg~-g~gs~~~~r~~~~~g~ 314 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAG---ADAVKVGI-GPGSICTTRIVAGVGV 314 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcC---CCEEEECC-CCCccccceeecCCCc
Confidence 56788888864 22334444443333 22 235677888998888653 78876533 122 1
Q ss_pred CHHHHHHHHhc---cCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 93 DGFKLLEHIGL---EMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 93 DGlELLe~Ir~---~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
--++++..+.+ ...+||| .......+.+|+.+||+....
T Consensus 315 p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 315 PQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred CHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 12445544432 3468999 456778899999999998765
No 178
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=58.31 E-value=79 Score=33.58 Aligned_cols=107 Identities=21% Similarity=0.223 Sum_probs=61.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy--~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI 110 (665)
.++++|+.+.+. ++.+++.++..+. .+......++..+.+.. .|++++=-. .+.=|+.+++.+. ..+|||
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~pS~-~Eg~~~~~lEAma--~G~Pvv 300 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA----LDLFVLPSL-AEGISNTILEAMA--SGLPVI 300 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh----cCEEEeccc-cccCchHHHHHHH--cCCCEE
Confidence 356666665543 2445555554432 23222223333333332 466654222 2233566777764 468888
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
+.+. ....+.+..|..+++..|-+.++|.+++..++.
T Consensus 301 ~s~~-~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 301 ATAV-GGNPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred EcCC-CCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 5332 234456677889999999999999999988764
No 179
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=57.71 E-value=63 Score=31.05 Aligned_cols=68 Identities=19% Similarity=0.131 Sum_probs=46.6
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC--------CCHHHHHHHHhccCCccEE--ecCchHHHHHHHHcCCCeEEe
Q 006006 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGLEMDLPVI--TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 62 tAsngeEALelLre~k~~PDLVIlDI~MP~--------mDGlELLe~Ir~~~~IPVI--a~sd~e~a~kALe~GA~DYLl 131 (665)
.+.+.+++.+..+. .+|.|+++-..|. -.+++.++++++...+||+ +--+.+.+.++++.|++.+..
T Consensus 101 ~~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 101 STHSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAV 177 (196)
T ss_pred eCCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 34566676665543 3899998754442 3467888888766778887 334567788889999988755
Q ss_pred C
Q 006006 132 K 132 (665)
Q Consensus 132 K 132 (665)
=
T Consensus 178 g 178 (196)
T cd00564 178 I 178 (196)
T ss_pred e
Confidence 3
No 180
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=57.68 E-value=1e+02 Score=34.03 Aligned_cols=112 Identities=14% Similarity=0.156 Sum_probs=70.4
Q ss_pred ccEEEEEeCCH-------HHHHHHHHHHHhCCCEE--EEECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHH
Q 006006 33 GLRVLVVDDDI-------TCLRILEQMLRRCLYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLL 98 (665)
Q Consensus 33 girVLIVDDD~-------~ire~Lk~lL~~~gy~V--~tAsngeEALelLre~k~~PDLVIlDI~MP-----~mDGlELL 98 (665)
.+|+=|+.|+. ...+..+.++++ ++.| .++.+...|-++.+- . + +.++=+-=| +..--+.+
T Consensus 167 ~iKlEvi~e~~~llpd~~~~v~aa~~L~~~-Gf~v~~yc~~d~~~a~~l~~~-g--~-~avmPl~~pIGsg~gv~~p~~i 241 (326)
T PRK11840 167 LVKLEVLGDAKTLYPDMVETLKATEILVKE-GFQVMVYCSDDPIAAKRLEDA-G--A-VAVMPLGAPIGSGLGIQNPYTI 241 (326)
T ss_pred eEEEEEcCCCCCcccCHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHhc-C--C-EEEeeccccccCCCCCCCHHHH
Confidence 35555555544 333444444433 7777 355666666655543 3 5 333332111 12234667
Q ss_pred HHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHHH
Q 006006 99 EHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 149 (665)
Q Consensus 99 e~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl-----KPv~~eEL~~aLq~Vlrk 149 (665)
+.+.+..++||| +-...+.+.+|+++||++.|. |--++..+.+++++++.-
T Consensus 242 ~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~a 300 (326)
T PRK11840 242 RLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEA 300 (326)
T ss_pred HHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHH
Confidence 777666789998 567889999999999999865 556888888888887654
No 181
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=57.57 E-value=97 Score=33.06 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=63.7
Q ss_pred HHHHHHHhCCCE--EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh---ccCCccEE--ecCchHHHHH
Q 006006 48 ILEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG---LEMDLPVI--TDGRVSAVMR 120 (665)
Q Consensus 48 ~Lk~lL~~~gy~--V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir---~~~~IPVI--a~sd~e~a~k 120 (665)
.|++.|..-... +......-.+.+++.... +|.|++|.+=...|--++...++ .....|+| ...+...+.+
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~G--fD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r 85 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATSG--YDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHcC--CCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHH
Confidence 456666653322 223333356667666554 99999999766666555555553 33445566 5678888999
Q ss_pred HHHcCCCeEEeCCC-CHHHHHHHHHHH
Q 006006 121 GIRHGACDYLIKPI-REEELKNIWQHV 146 (665)
Q Consensus 121 ALe~GA~DYLlKPv-~~eEL~~aLq~V 146 (665)
+++.||.+.+.-=+ +.++.+++++.+
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHHHHHhc
Confidence 99999999998655 566666666554
No 182
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=57.43 E-value=42 Score=33.54 Aligned_cols=67 Identities=22% Similarity=0.295 Sum_probs=45.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE---EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCH---HHHHHHHh
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYN---VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG---FKLLEHIG 102 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~---V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDG---lELLe~Ir 102 (665)
-+|+.||-++.....+++-++..+.. .....+...++..+......+|||++| -|-..+ .++++.|.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD--PPY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD--PPYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE----STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC--CCcccchHHHHHHHHHH
Confidence 48999999999999999999987532 345678888887765433459999999 344333 44666664
No 183
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=57.29 E-value=61 Score=37.65 Aligned_cols=97 Identities=15% Similarity=0.243 Sum_probs=62.4
Q ss_pred CccEEEEEeCCH----HHHHHHHHHHHhC-CCEE--EEECCHHHHHHHHHHcCCCceEEEEeCC--------------CC
Q 006006 32 AGLRVLVVDDDI----TCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVH--------------MP 90 (665)
Q Consensus 32 ~girVLIVDDD~----~ire~Lk~lL~~~-gy~V--~tAsngeEALelLre~k~~PDLVIlDI~--------------MP 90 (665)
++..|+++|--. ...+.++++=+.+ +..| ..+.+.++|..+++.. .|.|.+-+. .|
T Consensus 259 ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aG---aD~i~vg~g~G~~~~t~~~~~~g~~ 335 (505)
T PLN02274 259 AGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAG---VDGLRVGMGSGSICTTQEVCAVGRG 335 (505)
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcC---cCEEEECCCCCccccCccccccCCC
Confidence 466778887542 2223333333332 2333 3588899999988643 898876431 23
Q ss_pred CCCHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 91 DMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 91 ~mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
...-+..+.++.+...+||| .......+.+|+.+||+....
T Consensus 336 ~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 336 QATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred cccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 33455566666655679999 456778899999999998776
No 184
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.72 E-value=73 Score=34.27 Aligned_cols=90 Identities=14% Similarity=0.158 Sum_probs=56.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhC-----CC-EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CC
Q 006006 36 VLVVDDDITCLRILEQMLRRC-----LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MD 106 (665)
Q Consensus 36 VLIVDDD~~ire~Lk~lL~~~-----gy-~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~ 106 (665)
|||-|+|-... .+.+.+... .. ....+.+.+++.+.++.. +|+|.+|=..|+ +--++.+.++.. ++
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~ag---aDiI~LDn~~~e-~l~~~v~~l~~~~~~~~ 231 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKAG---ADIIMLDNMTPE-EIREVIEALKREGLRER 231 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcC---cCEEEECCCCHH-HHHHHHHHHHhcCcCCC
Confidence 78888886554 566666542 12 234789999999999753 899999954333 222333444331 34
Q ss_pred ccEE--ecCchHHHHHHHHcCCCeEE
Q 006006 107 LPVI--TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 107 IPVI--a~sd~e~a~kALe~GA~DYL 130 (665)
+.+. +.-+.+.+.+..+.|+|.+-
T Consensus 232 ~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 232 VKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred EEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 4443 34466777777788887654
No 185
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=55.99 E-value=1.2e+02 Score=31.90 Aligned_cols=96 Identities=18% Similarity=0.122 Sum_probs=64.1
Q ss_pred HHHHHHhCC--CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCccEE--ecCchHHHHHH
Q 006006 49 LEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPVI--TDGRVSAVMRG 121 (665)
Q Consensus 49 Lk~lL~~~g--y~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~---~~~IPVI--a~sd~e~a~kA 121 (665)
|++.|..-. +.+..........+++.... +|.|++|++=...|--++...++. ....+++ ...+...+.++
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g--~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~ 80 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAGAG--FDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQL 80 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHhcC--CCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHH
Confidence 445555432 22333444456677776655 999999997666777666665543 2334555 55677789999
Q ss_pred HHcCCCeEEe-CCCCHHHHHHHHHHH
Q 006006 122 IRHGACDYLI-KPIREEELKNIWQHV 146 (665)
Q Consensus 122 Le~GA~DYLl-KPv~~eEL~~aLq~V 146 (665)
+..||++.+. |--+.++.+++++.+
T Consensus 81 Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 81 LDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred hCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 9999999865 456788887777665
No 186
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=55.90 E-value=1.1e+02 Score=33.35 Aligned_cols=96 Identities=18% Similarity=0.324 Sum_probs=56.2
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCC------------C
Q 006006 32 AGLRVLVVDD----DITCLRILEQMLRRCL-YNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (665)
Q Consensus 32 ~girVLIVDD----D~~ire~Lk~lL~~~g-y~V~--tAsngeEALelLre~k~~PDLVIlDI~MP~------------m 92 (665)
.+.+++++|- .....+.++.+-+... ..|. .+.+.++|..+++. ..|.|++.+ -|+ .
T Consensus 105 agv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a---GaD~I~vg~-g~G~~~~t~~~~g~g~ 180 (325)
T cd00381 105 AGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA---GADGVKVGI-GPGSICTTRIVTGVGV 180 (325)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc---CCCEEEECC-CCCcCcccceeCCCCC
Confidence 4567777763 2334444444443321 3332 56777888777753 379888632 111 1
Q ss_pred CHHHHHHHH---hccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 93 DGlELLe~I---r~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
--+.++..+ .....+||| ...+...+.+|+.+||+....
T Consensus 181 p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 181 PQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred CHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 122333333 223468999 345778889999999998765
No 187
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=55.84 E-value=1.4e+02 Score=32.81 Aligned_cols=95 Identities=12% Similarity=0.139 Sum_probs=59.4
Q ss_pred EEEEEeC----CHHHHHHHHHHHHhCC-CEE--EEECCHHHHHHHHHHcCCCceEEEEeCCCC-----------CCC--H
Q 006006 35 RVLVVDD----DITCLRILEQMLRRCL-YNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMD--G 94 (665)
Q Consensus 35 rVLIVDD----D~~ire~Lk~lL~~~g-y~V--~tAsngeEALelLre~k~~PDLVIlDI~MP-----------~mD--G 94 (665)
.++.+|- .....+.++++-+... ..| ..+.+.++|..+++.. +|.|.+-+.-. +.. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aG---ad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAG---ADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcC---cCEEEECCCCCcccccccccCCCCCccH
Confidence 6777753 2334444444433332 223 2578899998887643 78876442111 112 4
Q ss_pred HHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEeC
Q 006006 95 FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 95 lELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlK 132 (665)
+..+..+.+..++||| .-.....+.+|+.+||+....=
T Consensus 190 l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 5567777665679999 4567778889999999988764
No 188
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=55.80 E-value=1.2e+02 Score=31.92 Aligned_cols=96 Identities=17% Similarity=0.146 Sum_probs=63.2
Q ss_pred HHHHHHhCCC--EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh---ccCCccEE--ecCchHHHHHH
Q 006006 49 LEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG---LEMDLPVI--TDGRVSAVMRG 121 (665)
Q Consensus 49 Lk~lL~~~gy--~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir---~~~~IPVI--a~sd~e~a~kA 121 (665)
|++.|..-.. .+......-.+.+++.... +|.|++|.+=..+|--++...++ ...-.|+| ...+...+.++
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~G--~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~ 80 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGLAG--FDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRL 80 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhcC--CCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHH
Confidence 4455554332 2333334456677776554 99999999776666656655554 33344566 67788899999
Q ss_pred HHcCCCeEEeCCC-CHHHHHHHHHHH
Q 006006 122 IRHGACDYLIKPI-REEELKNIWQHV 146 (665)
Q Consensus 122 Le~GA~DYLlKPv-~~eEL~~aLq~V 146 (665)
++.||.+.+.-=+ +.++.+++++.+
T Consensus 81 LD~Ga~gIivP~v~taeea~~~v~a~ 106 (249)
T TIGR03239 81 LDIGFYNFLIPFVESAEEAERAVAAT 106 (249)
T ss_pred hcCCCCEEEecCcCCHHHHHHHHHHc
Confidence 9999999987544 567776666554
No 189
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=55.52 E-value=1.7e+02 Score=30.22 Aligned_cols=109 Identities=21% Similarity=0.280 Sum_probs=63.5
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCc
Q 006006 33 GLRVLVVDDDI---TCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (665)
Q Consensus 33 girVLIVDDD~---~ire~Lk~lL~~~gy--~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~I 107 (665)
.++++|+.+.+ ...+.+.+.+...+. .|......++..+.+.. .|++|+=-.-++.-|..+++.+. ..+
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~----ad~~i~ps~~~e~~~~~l~EA~a--~G~ 289 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL----ADIVVSASTEPEAFGRTAVEAQA--MGR 289 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh----CCEEEecCCCCCCCchHHHHHHh--cCC
Confidence 45666665443 233334444444332 34444433444444432 57766543234455667777764 467
Q ss_pred cEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 108 PVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 108 PVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
|+|+.+. ....+.+..+..+++..+-+.++|.+++..++.
T Consensus 290 PvI~~~~-~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 290 PVIASDH-GGARETVRPGETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred CEEEcCC-CCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 8885433 234556777889999999999999999875543
No 190
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=55.30 E-value=75 Score=34.92 Aligned_cols=108 Identities=14% Similarity=0.164 Sum_probs=55.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCE---------------EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHH
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYN---------------VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKL 97 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~---------------V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlEL 97 (665)
.++++||-|.+.-...++++++..+.. |..+....+..+.+.. -|++++--...+.-|..+
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~----aDi~~v~~S~~e~~g~~~ 337 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAI----ADIAFVGGSLVKRGGHNP 337 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHh----CCEEEECCCcCCCCCCCH
Confidence 356666666665445566665554432 2222222333333321 466554222211124344
Q ss_pred HHHHhccCCccEEec---CchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 98 LEHIGLEMDLPVITD---GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 98 Le~Ir~~~~IPVIa~---sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
+|.+. ..+|||+. .++..+.+.+. ..+++..|-+.++|.+++..++.
T Consensus 338 lEAma--~G~PVI~g~~~~~~~e~~~~~~--~~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 338 LEPAA--FGVPVISGPHTFNFKEIFERLL--QAGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHH--hCCCEEECCCccCHHHHHHHHH--HCCCeEEECCHHHHHHHHHHHhc
Confidence 55442 46888842 33444433332 22567778899999999988865
No 191
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=55.16 E-value=1e+02 Score=34.71 Aligned_cols=66 Identities=18% Similarity=0.331 Sum_probs=44.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCccEEecCchHHHHHHHHc------CCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITDGRVSAVMRGIRH------GACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~sd~e~a~kALe~------GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
.|++++--. .+.-|+.+++.+. ..+|||+.+ .....+.+.. |..+++..|-+.++|.+++.+++..
T Consensus 371 aDv~vlpS~-~Eg~p~~vlEAma--~G~PVVatd-~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~ 442 (475)
T cd03813 371 LDVLVLTSI-SEGQPLVILEAMA--AGIPVVATD-VGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKD 442 (475)
T ss_pred CCEEEeCch-hhcCChHHHHHHH--cCCCEEECC-CCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcC
Confidence 577766433 2333566677664 467888533 2233445544 7799999999999999999988653
No 192
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=54.82 E-value=1.7e+02 Score=28.72 Aligned_cols=98 Identities=11% Similarity=0.046 Sum_probs=60.6
Q ss_pred CccEEEEEeCCH--HHHHHHHHHHHhCCCEEE----EECCHHHHHHHHHHcCCCceEEEEeCC-----CCCCCHHHHHHH
Q 006006 32 AGLRVLVVDDDI--TCLRILEQMLRRCLYNVT----TCSQAAVALDILRERKGCFDVVLSDVH-----MPDMDGFKLLEH 100 (665)
Q Consensus 32 ~girVLIVDDD~--~ire~Lk~lL~~~gy~V~----tAsngeEALelLre~k~~PDLVIlDI~-----MP~mDGlELLe~ 100 (665)
.+...+++.+.. ...+.+.+.+++.+..+. .+.+..++++.+. .. .|.|.+... .....+.+.+++
T Consensus 76 aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~-~~--~d~v~~~~~~~~~~~~~~~~~~~i~~ 152 (202)
T cd04726 76 AGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK-LG--VDIVILHRGIDAQAAGGWWPEDDLKK 152 (202)
T ss_pred cCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH-CC--CCEEEEcCcccccccCCCCCHHHHHH
Confidence 455666665543 223444455555555443 5567788887443 33 898887521 112456777787
Q ss_pred HhccCCccEE--ecCchHHHHHHHHcCCCeEEeC
Q 006006 101 IGLEMDLPVI--TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 101 Ir~~~~IPVI--a~sd~e~a~kALe~GA~DYLlK 132 (665)
++...++|++ .--..+.+.++++.||+.++.=
T Consensus 153 ~~~~~~~~i~~~GGI~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 153 VKKLLGVKVAVAGGITPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred HHhhcCCCEEEECCcCHHHHHHHHhcCCCEEEEe
Confidence 7654677777 3335788889999999987653
No 193
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.75 E-value=1.1e+02 Score=31.46 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=55.3
Q ss_pred HHHHhCC-CEEEEECCHHHHHHHHHHcCC-CceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE--ecCchHHHHHHHHcC
Q 006006 51 QMLRRCL-YNVTTCSQAAVALDILRERKG-CFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI--TDGRVSAVMRGIRHG 125 (665)
Q Consensus 51 ~lL~~~g-y~V~tAsngeEALelLre~k~-~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI--a~sd~e~a~kALe~G 125 (665)
+.|...+ .-|....+.++|++.++...+ .++ ++.+-|-.-++++.++.+++. +++.|- .--+.+.+.+|+++|
T Consensus 10 ~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aG 87 (212)
T PRK05718 10 EILRAGPVVPVIVINKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAG 87 (212)
T ss_pred HHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcC
Confidence 3444433 445677888999888875432 255 444445555899999999754 443332 345668899999999
Q ss_pred CCeEEeCCCCHHHH
Q 006006 126 ACDYLIKPIREEEL 139 (665)
Q Consensus 126 A~DYLlKPv~~eEL 139 (665)
|+-.+.--++.+-+
T Consensus 88 A~FivsP~~~~~vi 101 (212)
T PRK05718 88 AQFIVSPGLTPPLL 101 (212)
T ss_pred CCEEECCCCCHHHH
Confidence 96555544555333
No 194
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.02 E-value=72 Score=34.43 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=57.8
Q ss_pred cEEEEE--eCCHHHHHH---HHHHHHhCCCEEEEECCHHHHHHH-------------HHHcCCCceEEEEeCCCCCCCHH
Q 006006 34 LRVLVV--DDDITCLRI---LEQMLRRCLYNVTTCSQAAVALDI-------------LRERKGCFDVVLSDVHMPDMDGF 95 (665)
Q Consensus 34 irVLIV--DDD~~ire~---Lk~lL~~~gy~V~tAsngeEALel-------------Lre~k~~PDLVIlDI~MP~mDGl 95 (665)
|+|.|+ -+.+...+. +.++|...++.+.......+.+.. .......+|+||+ -+.||
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDG- 75 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDG- 75 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcH-
Confidence 567777 233444444 444455557777654332222110 0111113687776 36677
Q ss_pred HHHHHHhc--cCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 96 KLLEHIGL--EMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 96 ELLe~Ir~--~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
.+++..+. ...+||++- ..|-.+||. .++++++.+++++++++..
T Consensus 76 T~L~aa~~~~~~~~PilGI----------N~G~lGFLt-~~~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 76 TFLRTATYVGNSNIPILGI----------NTGRLGFLA-TVSKEEIEETIDELLNGDY 122 (292)
T ss_pred HHHHHHHHhcCCCCCEEEE----------ecCCCCccc-ccCHHHHHHHHHHHHcCCc
Confidence 34454442 246898831 235567887 6788999999999987764
No 195
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=53.64 E-value=52 Score=33.30 Aligned_cols=63 Identities=10% Similarity=0.206 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCCCC-CCH--HHHHHHHhccCCccEE---ecCchHHHHHHHHcC-CCeEEe
Q 006006 67 AVALDILRERKGCFD-VVLSDVHMPD-MDG--FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHG-ACDYLI 131 (665)
Q Consensus 67 eEALelLre~k~~PD-LVIlDI~MP~-mDG--lELLe~Ir~~~~IPVI---a~sd~e~a~kALe~G-A~DYLl 131 (665)
.+..+.+.+.. ++ ++++|+..-+ ..| +++++++++...+|+| .-.+.+.+.++++.| |++.+.
T Consensus 149 ~e~~~~~~~~g--~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 149 EDLAKRFEDAG--VKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHhcC--CCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 55666665543 66 8888886533 234 6888888776679999 346777888889988 888775
No 196
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=53.05 E-value=1.4e+02 Score=31.59 Aligned_cols=55 Identities=9% Similarity=0.141 Sum_probs=38.3
Q ss_pred HHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCe------EEeCCCCHHHHHHHHHHHHHH
Q 006006 95 FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACD------YLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 95 lELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~D------YLlKPv~~eEL~~aLq~Vlrk 149 (665)
++.+.++++...+||| .-.+.+.+.+++..||+. ++.+|.-..++.+-+.+.+..
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~ 286 (300)
T TIGR01037 223 LRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKA 286 (300)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHH
Confidence 4667777776779999 345778889999999875 566775555555555555444
No 197
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=52.18 E-value=1e+02 Score=34.73 Aligned_cols=105 Identities=14% Similarity=0.244 Sum_probs=66.9
Q ss_pred eCCHHHHHHHHHHHHhCCCE----EEEE-----------------------CCHHHHHHHHHHcCCCceEEEEeCCCCCC
Q 006006 40 DDDITCLRILEQMLRRCLYN----VTTC-----------------------SQAAVALDILRERKGCFDVVLSDVHMPDM 92 (665)
Q Consensus 40 DDD~~ire~Lk~lL~~~gy~----V~tA-----------------------sngeEALelLre~k~~PDLVIlDI~MP~m 92 (665)
+++....+.+++.++..+|. +..+ -+.++++++++...+.++|+.+.==++..
T Consensus 210 ~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~ 289 (408)
T cd03313 210 SSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDED 289 (408)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 56677777778888665442 2221 24488888777633237887777666655
Q ss_pred CHHHHHHHHhccC--CccEEec----CchHHHHHHHHcCCCeE-EeCCCCHHHHHHHHHH
Q 006006 93 DGFKLLEHIGLEM--DLPVITD----GRVSAVMRGIRHGACDY-LIKPIREEELKNIWQH 145 (665)
Q Consensus 93 DGlELLe~Ir~~~--~IPVIa~----sd~e~a~kALe~GA~DY-LlKPv~~eEL~~aLq~ 145 (665)
| ++-.++|++.. .+||++. .+.....++++.++.++ ++||-...-|.++++.
T Consensus 290 D-~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~i 348 (408)
T cd03313 290 D-WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIEA 348 (408)
T ss_pred C-HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHH
Confidence 5 55556665553 6888732 35677888998887655 5799876655555544
No 198
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=52.02 E-value=94 Score=31.74 Aligned_cols=91 Identities=13% Similarity=0.044 Sum_probs=58.1
Q ss_pred HHHHHhCC-CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCcc-EE---ecCchHHHHHHHHc
Q 006006 50 EQMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP-VI---TDGRVSAVMRGIRH 124 (665)
Q Consensus 50 k~lL~~~g-y~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IP-VI---a~sd~e~a~kALe~ 124 (665)
.+.|.... .-|....+.+++++.++..- .-.+=++.+.+-.-++++.++.+++....+ +| .--+.+.+..|+++
T Consensus 4 ~~~l~~~~~~~v~r~~~~~~~~~~~~a~~-~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~a 82 (206)
T PRK09140 4 MQPFTKLPLIAILRGITPDEALAHVGALI-EAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADA 82 (206)
T ss_pred hhHHHhCCEEEEEeCCCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHc
Confidence 34455443 34556677888887776432 123346677777778999999987554333 34 34577888999999
Q ss_pred CCCeEEeCCCCHHHHHHH
Q 006006 125 GACDYLIKPIREEELKNI 142 (665)
Q Consensus 125 GA~DYLlKPv~~eEL~~a 142 (665)
||+ |+.-|....++.+.
T Consensus 83 GA~-fivsp~~~~~v~~~ 99 (206)
T PRK09140 83 GGR-LIVTPNTDPEVIRR 99 (206)
T ss_pred CCC-EEECCCCCHHHHHH
Confidence 995 55557555555443
No 199
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=51.68 E-value=1.2e+02 Score=34.41 Aligned_cols=97 Identities=15% Similarity=0.238 Sum_probs=58.7
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhC-CCE--EEEECCHHHHHHHHHHcCCCceEEEEeCCC--------------C
Q 006006 32 AGLRVLVVDDD----ITCLRILEQMLRRC-LYN--VTTCSQAAVALDILRERKGCFDVVLSDVHM--------------P 90 (665)
Q Consensus 32 ~girVLIVDDD----~~ire~Lk~lL~~~-gy~--V~tAsngeEALelLre~k~~PDLVIlDI~M--------------P 90 (665)
++..|+++|-- ....+.++.+=+.. ... +.-+.+.++|..+++.. .|.|.+-+.- |
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aG---aD~I~vG~g~Gs~c~tr~~~g~g~p 240 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVG---ADCLKVGIGPGSICTTRIVAGVGVP 240 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcC---CCEEEECCCCCcCCcceeecCCCCC
Confidence 56788887752 23333333332222 122 33578889998888643 8988764311 2
Q ss_pred CCCHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 91 DMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 91 ~mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
..+-+..+.++.....+||| .......+.+|+.+||+....
T Consensus 241 ~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 241 QITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 22223233444334578999 456788899999999998876
No 200
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.74 E-value=2.2e+02 Score=33.09 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=49.3
Q ss_pred CceEEEEe-CCCCCCCHHHHH-HHHhcc-CCccEE-ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 79 CFDVVLSD-VHMPDMDGFKLL-EHIGLE-MDLPVI-TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 79 ~PDLVIlD-I~MP~mDGlELL-e~Ir~~-~~IPVI-a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
.+-|+|+| ++|-..+.+..+ +.+.+- .++.+| +..+...+...+..-+..|-.+|++.+++...+++++..
T Consensus 121 ~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~ 195 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI 195 (484)
T ss_pred CCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHH
Confidence 36788888 555444555543 333321 244444 666677777888888889999999999999888887654
No 201
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=50.19 E-value=1.5e+02 Score=30.84 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=37.2
Q ss_pred HHHHHHHHhccCCccEE--ecCc-------hHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006006 94 GFKLLEHIGLEMDLPVI--TDGR-------VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146 (665)
Q Consensus 94 GlELLe~Ir~~~~IPVI--a~sd-------~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~V 146 (665)
++++++++|+...+|++ .+-+ ..++.++.++|+++.+.-....+++...++.+
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~ 125 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAA 125 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 46666777765577866 4523 55677889999999999766777776666554
No 202
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=49.82 E-value=1.6e+02 Score=29.90 Aligned_cols=75 Identities=19% Similarity=0.151 Sum_probs=58.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHHcCCCceEEEEeCCC-C-CCCHHHHHHHHhccCC
Q 006006 36 VLVVDDDITCLRILEQMLRRCLYNVTTCS-------QAAVALDILRERKGCFDVVLSDVHM-P-DMDGFKLLEHIGLEMD 106 (665)
Q Consensus 36 VLIVDDD~~ire~Lk~lL~~~gy~V~tAs-------ngeEALelLre~k~~PDLVIlDI~M-P-~mDGlELLe~Ir~~~~ 106 (665)
|||=|-|...++.++..-+..+-+|...+ ++++.++++.+.+..|=+|..|-.= . ..-|-+.++.+-.++.
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~ 82 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPD 82 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCC
Confidence 56777788888899888888888887544 6789999999888778888888543 2 2457788888877888
Q ss_pred ccEE
Q 006006 107 LPVI 110 (665)
Q Consensus 107 IPVI 110 (665)
+-|+
T Consensus 83 IeVL 86 (180)
T PF14097_consen 83 IEVL 86 (180)
T ss_pred ceEE
Confidence 7776
No 203
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=49.59 E-value=1.7e+02 Score=30.62 Aligned_cols=65 Identities=17% Similarity=0.288 Sum_probs=44.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
.|++++=.. .+.-|+.+++.+. ..+|+|+.+.. ...+.+..|..+|+.+|-+.++|.+++..++.
T Consensus 271 ~d~~v~ps~-~E~~~~~~~EAma--~g~PvI~s~~~-~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 271 ADLFLLPSE-KESFGLAALEAMA--CGVPVVASNAG-GIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred cCEEEeCCC-cCCCccHHHHHHH--cCCCEEEeCCC-CchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 466665432 2334666677664 46888854332 34567778889999999999999999888764
No 204
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=49.57 E-value=1.3e+02 Score=30.93 Aligned_cols=97 Identities=19% Similarity=0.258 Sum_probs=57.7
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHHcCCCceEEEEeCC------CCCCCHHHHHHH
Q 006006 32 AGLRVLVVDDD----ITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVH------MPDMDGFKLLEH 100 (665)
Q Consensus 32 ~girVLIVDDD----~~ire~Lk~lL~~~gy~-V~tAsngeEALelLre~k~~PDLVIlDI~------MP~mDGlELLe~ 100 (665)
.|..|+-+|-- |...+.+-..++..+.. ..-+++.+|++...+.. +|+|=+=+. .....-++|+++
T Consensus 63 aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~G---~D~I~TTLsGYT~~t~~~~pD~~lv~~ 139 (192)
T PF04131_consen 63 AGADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAELG---FDIIGTTLSGYTPYTKGDGPDFELVRE 139 (192)
T ss_dssp CT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT----SEEE-TTTTSSTTSTTSSHHHHHHHH
T ss_pred cCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcC---CCEEEcccccCCCCCCCCCCCHHHHHH
Confidence 45566666643 12233333334443322 24789999999987643 898876431 112345889999
Q ss_pred HhccCCccEE---ecCchHHHHHHHHcCCCeEEeC
Q 006006 101 IGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 101 Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlK 132 (665)
+... .+||| ...+++.+.+|+++||+..+.=
T Consensus 140 l~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 140 LVQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp HHHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-
T ss_pred HHhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEEC
Confidence 9765 89998 4678899999999999998764
No 205
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=49.28 E-value=2.5e+02 Score=28.01 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006006 67 AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146 (665)
Q Consensus 67 eEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~V 146 (665)
++..+++.. .|++|+-... +.-|..+++.+. ..+|||+.+. ....+.+..+-.+++..+.+.++|.+.+.++
T Consensus 267 ~~~~~~~~~----~di~i~~~~~-~~~~~~~~Ea~~--~g~pvI~~~~-~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~ 338 (374)
T cd03801 267 EDLPALYAA----ADVFVLPSLY-EGFGLVLLEAMA--AGLPVVASDV-GGIPEVVEDGETGLLVPPGDPEALAEAILRL 338 (374)
T ss_pred hhHHHHHHh----cCEEEecchh-ccccchHHHHHH--cCCcEEEeCC-CChhHHhcCCcceEEeCCCCHHHHHHHHHHH
Confidence 455555442 4666654333 333555666653 4678884332 2233455667889999999999999999887
Q ss_pred HHH
Q 006006 147 VRK 149 (665)
Q Consensus 147 lrk 149 (665)
+..
T Consensus 339 ~~~ 341 (374)
T cd03801 339 LDD 341 (374)
T ss_pred HcC
Confidence 653
No 206
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=48.93 E-value=2.4e+02 Score=29.43 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=61.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEEC--CHHHHHHHHHHcCCCceEEEEeCCC-C----CCCHHHHHHHHhc
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCS--QAAVALDILRERKGCFDVVLSDVHM-P----DMDGFKLLEHIGL 103 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~g--y~V~tAs--ngeEALelLre~k~~PDLVIlDI~M-P----~mDGlELLe~Ir~ 103 (665)
.++++||.+.+.. +.++.+.+..+ ..|.... +.++..+.+.. .|++++=... + +.-|..+++.+.
T Consensus 219 ~~~l~ivG~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----ad~~v~ps~~~~~~~~E~~~~~~~EA~a- 292 (367)
T cd05844 219 EVRLVIIGDGPLL-AALEALARALGLGGRVTFLGAQPHAEVRELMRR----ARIFLQPSVTAPSGDAEGLPVVLLEAQA- 292 (367)
T ss_pred CeEEEEEeCchHH-HHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHh----CCEEEECcccCCCCCccCCchHHHHHHH-
Confidence 3566666665432 33445554422 2333222 22444444432 4666553221 1 112566777764
Q ss_pred cCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 104 EMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 104 ~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
..+|||+.+.. ...+.+..|..+++..|-+.++|.+++.+++..
T Consensus 293 -~G~PvI~s~~~-~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 293 -SGVPVVATRHG-GIPEAVEDGETGLLVPEGDVAALAAALGRLLAD 336 (367)
T ss_pred -cCCCEEEeCCC-CchhheecCCeeEEECCCCHHHHHHHHHHHHcC
Confidence 46888843322 234555677888999999999999999888653
No 207
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=48.70 E-value=92 Score=36.14 Aligned_cols=91 Identities=11% Similarity=0.046 Sum_probs=45.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCccEE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAs-ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir-~~~~IPVI 110 (665)
++.|+++|.|+...+.+++ .++.+...+ .-++.++.+.-.+ .|.+++-+.-.+.+ ..++..++ ..++.++|
T Consensus 440 g~~vvvId~d~~~~~~~~~----~g~~~i~GD~~~~~~L~~a~i~~--a~~viv~~~~~~~~-~~iv~~~~~~~~~~~ii 512 (558)
T PRK10669 440 GIPLVVIETSRTRVDELRE----RGIRAVLGNAANEEIMQLAHLDC--ARWLLLTIPNGYEA-GEIVASAREKRPDIEII 512 (558)
T ss_pred CCCEEEEECCHHHHHHHHH----CCCeEEEcCCCCHHHHHhcCccc--cCEEEEEcCChHHH-HHHHHHHHHHCCCCeEE
Confidence 4567777777655444432 344443322 1234444443333 67666654322211 22333333 34667777
Q ss_pred -ecCchHHHHHHHHcCCCeEE
Q 006006 111 -TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYL 130 (665)
...+.+......+.||+..+
T Consensus 513 ar~~~~~~~~~l~~~Gad~vv 533 (558)
T PRK10669 513 ARAHYDDEVAYITERGANQVV 533 (558)
T ss_pred EEECCHHHHHHHHHcCCCEEE
Confidence 33445555555678887555
No 208
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=48.60 E-value=55 Score=35.17 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=42.6
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE--ecCchHHHHHHHHcCCCeE
Q 006006 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI--TDGRVSAVMRGIRHGACDY 129 (665)
Q Consensus 60 V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI--a~sd~e~a~kALe~GA~DY 129 (665)
...+.+.++|.+.++.. +|+|++| +|+..+-.+.++.++. .+.+.+. +.-+.+.+.+-...|++-+
T Consensus 192 eVEv~tleea~ea~~~G---aDiI~lD-n~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~i 260 (277)
T TIGR01334 192 TVEADTIEQALTVLQAS---PDILQLD-KFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLF 260 (277)
T ss_pred EEECCCHHHHHHHHHcC---cCEEEEC-CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEE
Confidence 35788999999998643 8999999 4554444455555542 2344333 3446666766677777654
No 209
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=48.31 E-value=2.3e+02 Score=31.36 Aligned_cols=107 Identities=16% Similarity=0.196 Sum_probs=63.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEEEE--CCHHHHHHHHHHcCCCceEEEEeCCCC---CCC--HHHHHHHHhcc
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLY--NVTTC--SQAAVALDILRERKGCFDVVLSDVHMP---DMD--GFKLLEHIGLE 104 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy--~V~tA--sngeEALelLre~k~~PDLVIlDI~MP---~mD--GlELLe~Ir~~ 104 (665)
++++||.|-+. ++.++++++..+. .|... -+.++..+.+.. .|+.++=.... +.+ |..+++.+.
T Consensus 254 ~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma-- 326 (406)
T PRK15427 254 FRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMA-- 326 (406)
T ss_pred EEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHh--
Confidence 45666665543 3445555554432 23322 233444555542 47766533211 123 355667664
Q ss_pred CCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 105 MDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 105 ~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
..+|||+.+. ..+.+.++.|..+++..|-+.++|.+++..++.
T Consensus 327 ~G~PVI~t~~-~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 VGIPVVSTLH-SGIPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCCEEEeCC-CCchhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 4688885332 335567788999999999999999999998875
No 210
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=48.24 E-value=2.1e+02 Score=30.20 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=58.8
Q ss_pred CccEEEEEeCCHH-HHHHHHHHHHhCCCEEE-EEC--CHHHHHHHHHHcCCCceEEEEeCCCCCC------CHHHHHHHH
Q 006006 32 AGLRVLVVDDDIT-CLRILEQMLRRCLYNVT-TCS--QAAVALDILRERKGCFDVVLSDVHMPDM------DGFKLLEHI 101 (665)
Q Consensus 32 ~girVLIVDDD~~-ire~Lk~lL~~~gy~V~-tAs--ngeEALelLre~k~~PDLVIlDI~MP~m------DGlELLe~I 101 (665)
.+..-+|+-|.+. ....+...+++.+.... .++ +..+-++.+.+....+..++.=..-.+. +-.+.++++
T Consensus 114 aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~l 193 (256)
T TIGR00262 114 VGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRL 193 (256)
T ss_pred cCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHH
Confidence 4556666666653 33445555566565432 222 2234444444444335555441111111 245677777
Q ss_pred hccCCccEE---ecCchHHHHHHHHcCCCeEEeCC
Q 006006 102 GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKP 133 (665)
Q Consensus 102 r~~~~IPVI---a~sd~e~a~kALe~GA~DYLlKP 133 (665)
|+....||+ .-.+.+.+.++.++||+..+.-.
T Consensus 194 r~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 194 KAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 776677877 44568899999999999999865
No 211
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=47.99 E-value=88 Score=35.34 Aligned_cols=122 Identities=21% Similarity=0.223 Sum_probs=76.2
Q ss_pred hHHHHHHhcCC-------CCCcceeeeeccCCCCCCCccEEEEEeCC-HHHHHHHHHHHHhCCCEEEEEC--CHHHHHHH
Q 006006 3 ALQRIVQSSGG-------SGYGSSRAADVAVPDQFPAGLRVLVVDDD-ITCLRILEQMLRRCLYNVTTCS--QAAVALDI 72 (665)
Q Consensus 3 i~~~~V~~mgG-------sg~Gs~f~~~~~~~d~fP~girVLIVDDD-~~ire~Lk~lL~~~gy~V~tAs--ngeEALel 72 (665)
+-+++.++=|| ||++.+.+.-+.+ ..+|=+||+.+|- --.+..+..++.+.+.+|..+. +.++.++.
T Consensus 68 lE~~~a~LEg~~~~~afsSGmaAI~~~~l~l---l~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~ 144 (396)
T COG0626 68 LEEALAELEGGEDAFAFSSGMAAISTALLAL---LKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAA 144 (396)
T ss_pred HHHHHHHhhCCCcEEEecCcHHHHHHHHHHh---cCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHH
Confidence 34566777777 6888888766655 3457799999884 5566778888888888888665 44456666
Q ss_pred HHHcCCCceEEEEeCC-CCCC---CHHHHHHHHhccCCccEEecCch--HHHHHHHHcCCCeEE
Q 006006 73 LRERKGCFDVVLSDVH-MPDM---DGFKLLEHIGLEMDLPVITDGRV--SAVMRGIRHGACDYL 130 (665)
Q Consensus 73 Lre~k~~PDLVIlDI~-MP~m---DGlELLe~Ir~~~~IPVIa~sd~--e~a~kALe~GA~DYL 130 (665)
+.+.. .++|+++-- -|-| |--.+.+..++.. +.+|..+.+ -+.++.+++|||=.+
T Consensus 145 ~~~~~--tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g-~~vvVDNTfatP~~q~PL~~GaDIVv 205 (396)
T COG0626 145 IKEPN--TKLVFLETPSNPLLEVPDIPAIARLAKAYG-ALVVVDNTFATPVLQRPLELGADIVV 205 (396)
T ss_pred hcccC--ceEEEEeCCCCcccccccHHHHHHHHHhcC-CEEEEECCcccccccChhhcCCCEEE
Confidence 65323 899999851 1322 3223333334333 444433333 346678888887554
No 212
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=47.07 E-value=1.2e+02 Score=32.97 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=49.9
Q ss_pred HHHhCCCEE-EEECCHHHHHHHHHHcCCCceEEEEeC-CC----C-CC-CHHHHHHHHhccCCccEE---ecCchHHHHH
Q 006006 52 MLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDV-HM----P-DM-DGFKLLEHIGLEMDLPVI---TDGRVSAVMR 120 (665)
Q Consensus 52 lL~~~gy~V-~tAsngeEALelLre~k~~PDLVIlDI-~M----P-~m-DGlELLe~Ir~~~~IPVI---a~sd~e~a~k 120 (665)
.++..+..| ..+.+.++|...++.. +|.||+-= .- . .. +-+.|+.+++...++||| .-.+...+..
T Consensus 131 ~l~~~gi~v~~~v~s~~~A~~a~~~G---~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaa 207 (330)
T PF03060_consen 131 RLHAAGIKVIPQVTSVREARKAAKAG---ADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAA 207 (330)
T ss_dssp HHHHTT-EEEEEESSHHHHHHHHHTT----SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHH
T ss_pred HHHHcCCccccccCCHHHHHHhhhcC---CCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHH
Confidence 344445444 5899999999877653 89988762 11 1 22 357788888877789999 3457777889
Q ss_pred HHHcCCCeEEeC
Q 006006 121 GIRHGACDYLIK 132 (665)
Q Consensus 121 ALe~GA~DYLlK 132 (665)
++.+||++...=
T Consensus 208 al~lGA~gV~~G 219 (330)
T PF03060_consen 208 ALALGADGVQMG 219 (330)
T ss_dssp HHHCT-SEEEES
T ss_pred HHHcCCCEeecC
Confidence 999999998753
No 213
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=46.22 E-value=19 Score=36.21 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE
Q 006006 67 AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 67 eEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL 130 (665)
+.+++.+++.+ ||.|=+ ||+ =-.++++++++...+|+|+ -.+.+.+.+|+++||...=
T Consensus 107 ~~~~~~i~~~~--PD~vEi---lPg-~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVS 167 (175)
T PF04309_consen 107 ETGIKQIEQSK--PDAVEI---LPG-VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVS 167 (175)
T ss_dssp HHHHHHHHHHT---SEEEE---ESC-CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEE
T ss_pred HHHHHHHhhcC--CCEEEE---chH-HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEE
Confidence 57788888877 997754 888 5557888887778899993 4678889999999998753
No 214
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=46.03 E-value=2.5e+02 Score=31.07 Aligned_cols=102 Identities=10% Similarity=0.103 Sum_probs=58.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHH-HHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCcc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAA-VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~-gy~V~-tAsnge-EALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IP 108 (665)
..+||.||.- -.-+..+..+.... ++++. .++... .|-+..++.. .. +..|+ -+++ ...++-
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~g--i~-~y~~~-------eell----~d~Di~ 66 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLG--VP-LYCEV-------EELP----DDIDIA 66 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhC--CC-ccCCH-------HHHh----cCCCEE
Confidence 4578888887 44444444443332 45554 444444 4444444332 11 12221 1232 234554
Q ss_pred EE-e------cCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 109 VI-T------DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 109 VI-a------~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
+| . ....+.+.+|++.|..=++-||+..+|..+.++.+-+
T Consensus 67 ~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 67 CVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred EEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 44 1 2447889999999999999999998777777666543
No 215
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=45.79 E-value=43 Score=34.16 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=49.1
Q ss_pred HHHHhCC-CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE---ecCchHHHHHHHHcC
Q 006006 51 QMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI---TDGRVSAVMRGIRHG 125 (665)
Q Consensus 51 ~lL~~~g-y~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI---a~sd~e~a~kALe~G 125 (665)
+.|+..+ .-|....+.+++++.++..- .=.+=++.+.|-.-+.++.++.++++ ++ -+| .--+.+.+.+|+++|
T Consensus 3 ~~l~~~~iiaVir~~~~~~a~~~~~al~-~gGi~~iEiT~~t~~a~~~I~~l~~~~p~-~~vGAGTV~~~e~a~~a~~aG 80 (196)
T PF01081_consen 3 ERLKENKIIAVIRGDDPEDAVPIAEALI-EGGIRAIEITLRTPNALEAIEALRKEFPD-LLVGAGTVLTAEQAEAAIAAG 80 (196)
T ss_dssp HHHHHHSEEEEETTSSGGGHHHHHHHHH-HTT--EEEEETTSTTHHHHHHHHHHHHTT-SEEEEES--SHHHHHHHHHHT
T ss_pred HHHhhCCEEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEecCCccHHHHHHHHHHHCCC-CeeEEEeccCHHHHHHHHHcC
Confidence 3444433 23344555666666554321 01233566666667899999988654 44 345 346788999999999
Q ss_pred CCeEEeCCCCHHHHHH
Q 006006 126 ACDYLIKPIREEELKN 141 (665)
Q Consensus 126 A~DYLlKPv~~eEL~~ 141 (665)
|.-.++--++++-+..
T Consensus 81 A~FivSP~~~~~v~~~ 96 (196)
T PF01081_consen 81 AQFIVSPGFDPEVIEY 96 (196)
T ss_dssp -SEEEESS--HHHHHH
T ss_pred CCEEECCCCCHHHHHH
Confidence 9766654445444433
No 216
>PRK09978 DNA-binding transcriptional regulator GadX; Provisional
Probab=45.79 E-value=18 Score=38.75 Aligned_cols=32 Identities=19% Similarity=0.061 Sum_probs=27.7
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
..+++++||.++|.+- .||.+.||+. |+||+.
T Consensus 157 ~~lsl~~lA~~~g~S~-~~L~R~Fk~~-G~S~~~ 188 (274)
T PRK09978 157 HEWTLARIASELLMSP-SLLKKKLREE-ETSYSQ 188 (274)
T ss_pred CCCCHHHHHHHHCcCH-HHHHHHHHhc-CCCHHH
Confidence 4689999999999764 6999999986 999974
No 217
>PLN02591 tryptophan synthase
Probab=45.41 E-value=2.1e+02 Score=30.31 Aligned_cols=96 Identities=14% Similarity=0.068 Sum_probs=59.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEE-EE--CCHHHHHHHHHHcCCCceEEEEeCCCCCC---------CHHHHHHHHh
Q 006006 35 RVLVVDDDITCLRILEQMLRRCLYNVT-TC--SQAAVALDILRERKGCFDVVLSDVHMPDM---------DGFKLLEHIG 102 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~~gy~V~-tA--sngeEALelLre~k~~PDLVIlDI~MP~m---------DGlELLe~Ir 102 (665)
-|+|.|-.......+...+++.+.... .+ +..++=++.+.+.. .+.|-+ +-+.+. +-.++++++|
T Consensus 109 GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~--~gFIY~-Vs~~GvTG~~~~~~~~~~~~i~~vk 185 (250)
T PLN02591 109 GLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS--EGFVYL-VSSTGVTGARASVSGRVESLLQELK 185 (250)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC--CCcEEE-eeCCCCcCCCcCCchhHHHHHHHHH
Confidence 355555555556666666666665433 22 22234455555544 444432 111211 2345577888
Q ss_pred ccCCccEE---ecCchHHHHHHHHcCCCeEEeCC
Q 006006 103 LEMDLPVI---TDGRVSAVMRGIRHGACDYLIKP 133 (665)
Q Consensus 103 ~~~~IPVI---a~sd~e~a~kALe~GA~DYLlKP 133 (665)
+..++|++ +-.+.+.+.+..++||++.+.-.
T Consensus 186 ~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 186 EVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred hcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 87889988 45678889999999999999876
No 218
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=45.36 E-value=24 Score=35.46 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=37.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEe
Q 006006 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD 86 (665)
Q Consensus 36 VLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlD 86 (665)
|||||.+..+-..|.++|++.++.+..+...+..++.+.... ||.||+-
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~--~d~iIls 50 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMK--PDFLMIS 50 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCC--CCEEEEC
Confidence 899999999999999999998888877665543444444444 8888773
No 219
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.07 E-value=1.2e+02 Score=31.20 Aligned_cols=78 Identities=10% Similarity=0.168 Sum_probs=47.0
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEeCCCCHH
Q 006006 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREE 137 (665)
Q Consensus 61 ~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~e 137 (665)
....+.+++++.++...+ -.+=++.+.|-.-+.++.++++++...-.+| .--+.+.+.+|+++||. ||.-|.-..
T Consensus 10 ir~~~~~~a~~ia~al~~-gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~ 87 (201)
T PRK06015 10 LLIDDVEHAVPLARALAA-GGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQ 87 (201)
T ss_pred EEcCCHHHHHHHHHHHHH-CCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCH
Confidence 344556666665543210 1222555666666788888888654332345 45688899999999996 555565444
Q ss_pred HHH
Q 006006 138 ELK 140 (665)
Q Consensus 138 EL~ 140 (665)
++.
T Consensus 88 ~vi 90 (201)
T PRK06015 88 ELL 90 (201)
T ss_pred HHH
Confidence 443
No 220
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=44.97 E-value=2.2e+02 Score=30.87 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHH
Q 006006 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 145 (665)
Q Consensus 66 geEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~ 145 (665)
.++..+.+.. .|+.++ ...++.-|+.++|.+. ..+|||+.+.. ...+.+..|..+++..|.+.++|.+++.+
T Consensus 291 ~~~~~~~l~~----adv~v~-~s~~e~~~~~llEAmA--~G~PVIas~~~-g~~e~i~~~~~G~lv~~~d~~~la~~i~~ 362 (396)
T cd03818 291 YDQYLALLQV----SDVHVY-LTYPFVLSWSLLEAMA--CGCLVVGSDTA-PVREVITDGENGLLVDFFDPDALAAAVIE 362 (396)
T ss_pred HHHHHHHHHh----CcEEEE-cCcccccchHHHHHHH--CCCCEEEcCCC-CchhhcccCCceEEcCCCCHHHHHHHHHH
Confidence 3455555543 466654 2345555667777764 56889954432 34566778899999999999999999998
Q ss_pred HHHH
Q 006006 146 VVRK 149 (665)
Q Consensus 146 Vlrk 149 (665)
++..
T Consensus 363 ll~~ 366 (396)
T cd03818 363 LLDD 366 (396)
T ss_pred HHhC
Confidence 8754
No 221
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=44.81 E-value=99 Score=31.81 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~m-DG--lELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
+..+..+.+.... ..+|++|+.--++ .| +++++++.+...+|+| .-.+.+.+.++.+.||+..+.
T Consensus 142 ~~~~~~~~~~~~g--~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 142 SLEEVRDFLNSFD--YGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred cHHHHHHHHHhcC--CEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 4445555555443 4799999976543 33 7889999877889999 456788888888899998775
No 222
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=44.60 E-value=49 Score=35.13 Aligned_cols=92 Identities=12% Similarity=0.056 Sum_probs=55.6
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhCC--C-EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHH-HHHHHhccCC
Q 006006 35 RVLVVDDDITCLRILEQML----RRCL--Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFK-LLEHIGLEMD 106 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL----~~~g--y-~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlE-LLe~Ir~~~~ 106 (665)
.|||-|+|-.+.-.+...+ +..+ . ....+.+.+|+.+.+... +|.|.+|-.-| +.+. +++.++..++
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~g---aD~I~ld~~~~--e~l~~~v~~i~~~~~ 227 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEAG---ADIIMLDNMSP--EELKEAVKLLKGLPR 227 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcC---CCEEEECCCCH--HHHHHHHHHhccCCC
Confidence 4666666644443332222 2222 2 235788999999988643 89999986444 2222 2333333246
Q ss_pred ccEE--ecCchHHHHHHHHcCCCeEEe
Q 006006 107 LPVI--TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 107 IPVI--a~sd~e~a~kALe~GA~DYLl 131 (665)
+|+. +--+.+.+.+..+.||+.+-.
T Consensus 228 i~i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 228 VLLEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred eEEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 7766 445778888888999987643
No 223
>PLN00191 enolase
Probab=44.33 E-value=1.5e+02 Score=34.09 Aligned_cols=81 Identities=15% Similarity=0.207 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe----cCchHHHHHHHHcCCCeE-EeCCCCHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT----DGRVSAVMRGIRHGACDY-LIKPIREEEL 139 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa----~sd~e~a~kALe~GA~DY-LlKPv~~eEL 139 (665)
+.+++++.++...+.++|+.+.=-++..| ++-+++|++...+||++ ..+...+.++++.+++++ ++|+-...-|
T Consensus 296 s~~e~i~~~~~L~~~y~I~~IEDPl~~~D-~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGI 374 (457)
T PLN00191 296 SGDELIDLYKEFVSDYPIVSIEDPFDQDD-WEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTV 374 (457)
T ss_pred CHHHHHHHHHHHhhcCCcEEEECCCCccc-HHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCH
Confidence 77889998887554577877765555433 56667777667889883 245777889998887655 6888776666
Q ss_pred HHHHHHH
Q 006006 140 KNIWQHV 146 (665)
Q Consensus 140 ~~aLq~V 146 (665)
.++++.+
T Consensus 375 Tea~~~a 381 (457)
T PLN00191 375 TESIEAV 381 (457)
T ss_pred HHHHHHH
Confidence 6665543
No 224
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.21 E-value=76 Score=34.32 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=54.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC--CEE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCC
Q 006006 35 RVLVVDDDITCLRILEQMLRR----CL--YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMD 106 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~----~g--y~V-~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~ 106 (665)
.|||=|.|-...-.+.+.+.. .+ ..| .++.+.+||.+.+... +|+|.+| +|.-.+=-+.++.++. .++
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~G---aD~I~LD-n~~~e~l~~av~~~~~~~~~ 243 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEYG---ADIIMLD-NMPVDLMQQAVQLIRQQNPR 243 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcC---CCEEEEC-CCCHHHHHHHHHHHHhcCCC
Confidence 456666554443334444332 23 233 4789999999988643 8999999 3332222223333332 356
Q ss_pred ccEE--ecCchHHHHHHHHcCCCeEE
Q 006006 107 LPVI--TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 107 IPVI--a~sd~e~a~kALe~GA~DYL 130 (665)
+++. +--+.+.+.+....|++..-
T Consensus 244 i~leAsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 244 VKIEASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred eEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 6666 34467777777888987654
No 225
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=44.06 E-value=26 Score=38.57 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=29.8
Q ss_pred CCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 253 VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 253 ~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
...++++++|.++|-+ ...|-+.||+++|+||.
T Consensus 234 e~plsl~~LA~~~~~S-~R~leRlF~~~lG~sP~ 266 (328)
T COG4977 234 EEPLSLEELADRAGLS-RRQLERLFRAELGVSPA 266 (328)
T ss_pred cCCcCHHHHHHHhCCC-HHHHHHHHHHHhCCCHH
Confidence 5789999999999965 58899999999999997
No 226
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=43.88 E-value=99 Score=31.90 Aligned_cols=65 Identities=23% Similarity=0.299 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~m-DG--lELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
+..+.++.+.... =.++++|+..-++ .| +++++++.+...+|++ .-.+.+.+.++++.||+..+.
T Consensus 147 ~~~~~~~~~~~~~--~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 147 GPEELLRRLAKWP--EELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred CHHHHHHHHHHhC--CeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3556666665542 3799999977543 22 6778888776789998 467888888999999998875
No 227
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=43.49 E-value=1.1e+02 Score=31.86 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 67 AVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 67 eEALelLre~k~~PDLVIlDI~MP~m-DG--lELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
.+.++.+.+.. --.+|++|+..-++ .| +++++++.+...+|+| ...+.+.+.++++.|++..+.
T Consensus 151 ~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 151 FSFVRQLSDIP-LGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred HHHHHHHHHcC-CCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 45555554432 13799999977653 33 6778888777789999 456788888899999999876
No 228
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=43.16 E-value=2.1e+02 Score=29.62 Aligned_cols=86 Identities=6% Similarity=-0.018 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhCCCEEEEECCH---HHHHHHHHHcCCCceEEEEeCCCCCC------CHHHHHHHHhccC-CccEE---e
Q 006006 45 CLRILEQMLRRCLYNVTTCSQA---AVALDILRERKGCFDVVLSDVHMPDM------DGFKLLEHIGLEM-DLPVI---T 111 (665)
Q Consensus 45 ire~Lk~lL~~~gy~V~tAsng---eEALelLre~k~~PDLVIlDI~MP~m------DGlELLe~Ir~~~-~IPVI---a 111 (665)
....+.+.+++.+..+..+-+. .+.++.+.... .+++++ -.+|+. +-.+.++++|+.. ..||+ +
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~--~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gG 193 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLS--PLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFG 193 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC--CCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 3445556667767665433222 34444444433 577777 445552 2234566666443 46766 3
Q ss_pred cCchHHHHHHHHcCCCeEEeCC
Q 006006 112 DGRVSAVMRGIRHGACDYLIKP 133 (665)
Q Consensus 112 ~sd~e~a~kALe~GA~DYLlKP 133 (665)
-.+.+.+.++.+.||+.++.=.
T Consensus 194 I~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 194 LDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred cCCHHHHHHHHHcCCCEEEECH
Confidence 4467888888999999999864
No 229
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=43.16 E-value=1.9e+02 Score=29.25 Aligned_cols=63 Identities=8% Similarity=0.135 Sum_probs=51.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHH
Q 006006 35 RVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~~g--y~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe 99 (665)
+++|+.+++..++.++++++.+| |.|..+.+.+++++.++.....|.|+..+.+..+ .++-++
T Consensus 33 ~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir 97 (176)
T PRK03958 33 KIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIR 97 (176)
T ss_pred eEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHH
Confidence 88999999999999999999774 7799999999999999743334899999998866 444443
No 230
>PRK12704 phosphodiesterase; Provisional
Probab=42.79 E-value=40 Score=39.23 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=34.9
Q ss_pred CCccEE-ecCchH--HHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 105 MDLPVI-TDGRVS--AVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 105 ~~IPVI-a~sd~e--~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
|...+| +++... .+..+++.++.|+..||++++++...++.-+..
T Consensus 250 p~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~ 297 (520)
T PRK12704 250 PEAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDE 297 (520)
T ss_pred CCeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 334445 455554 788999999999999999999999888776654
No 231
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.77 E-value=89 Score=33.85 Aligned_cols=68 Identities=10% Similarity=0.026 Sum_probs=41.8
Q ss_pred EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE--ecCchHHHHHHHHcCCCeEE
Q 006006 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI--TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 59 ~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI--a~sd~e~a~kALe~GA~DYL 130 (665)
....+.+.+||.+.+... +|+|.+| +|.-.+--+.++.++.. +++.+. +.-+.+.+.+-.+.|++-+-
T Consensus 202 IeVEv~tl~ea~eal~~g---aDiI~LD-nm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 202 CEVEVDSLEQLDEVLAEG---AELVLLD-NFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred EEEEcCCHHHHHHHHHcC---CCEEEeC-CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 345789999999998643 8999999 44422222233333322 334333 34466777777788876543
No 232
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=42.63 E-value=1.8e+02 Score=30.43 Aligned_cols=96 Identities=16% Similarity=0.153 Sum_probs=60.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-E--E--C--CHHHHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhc
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-T--C--S--QAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~-t--A--s--ngeEALelLre~k~~PDLVIlDI~MP~m--DGlELLe~Ir~ 103 (665)
+.--.+..|...+.+.++.+- ..+..|+ . . . +..+..+.+++.. .|.|.+|...++. --++.++++++
T Consensus 111 g~G~~Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~~~~~~~~~a~~l~~aG--ad~i~Vd~~~~g~~~a~~~~I~~i~~ 187 (231)
T TIGR00736 111 GIGQELLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVDDG--FDGIHVDAMYPGKPYADMDLLKILSE 187 (231)
T ss_pred CCchhhcCCHHHHHHHHHHHH-cCCCcEEEEeCCCCCcchHHHHHHHHHHcC--CCEEEEeeCCCCCchhhHHHHHHHHH
Confidence 333445666666666666655 3333332 1 1 1 2224444455444 8999999777764 24888899887
Q ss_pred cC-CccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 104 EM-DLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 104 ~~-~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
.. ++||| .-.+.+.+.+.++.||+....
T Consensus 188 ~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 188 EFNDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred hcCCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 65 59999 345677788888899987643
No 233
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=42.34 E-value=31 Score=34.20 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=46.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeC-CC-CCCCH--HHHHHHHhccCCccEE
Q 006006 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV-HM-PDMDG--FKLLEHIGLEMDLPVI 110 (665)
Q Consensus 36 VLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI-~M-P~mDG--lELLe~Ir~~~~IPVI 110 (665)
|||||....+-..|.++|+..++.|..+.+.+.-++.+++.. ||.||+-= -| |..++ .++++.+ ...+||+
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~iilsgGP~~~~~~~~~~~~i~~~--~~~~PiL 76 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLA--PSHLVISPGPCTPNEAGISLAVIRHF--ADKLPIL 76 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcC--CCeEEEcCCCCChHhCCCchHHHHHh--cCCCCEE
Confidence 899999999999999999998888887765432234444444 88777632 11 11222 3444443 3468988
No 234
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=42.19 E-value=72 Score=34.99 Aligned_cols=64 Identities=23% Similarity=0.324 Sum_probs=48.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CC---EE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 006006 35 RVLVVDDDITCLRILEQMLRRC--LY---NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~~--gy---~V-~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~ 100 (665)
.|+++|-|..+.+.=++++... +| +| ....+|-..++.+.+.+ +|+||+|+.-|.+.+..+-++
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~--~dVii~dssdpvgpa~~lf~~ 216 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP--FDVIITDSSDPVGPACALFQK 216 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC--ceEEEEecCCccchHHHHHHH
Confidence 6888888888888877777653 33 23 34568888888886655 999999999999888766443
No 235
>PLN02591 tryptophan synthase
Probab=41.69 E-value=63 Score=34.12 Aligned_cols=55 Identities=13% Similarity=0.210 Sum_probs=40.8
Q ss_pred CHHHHHHHHhccCCccEE--ec-------CchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006006 93 DGFKLLEHIGLEMDLPVI--TD-------GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147 (665)
Q Consensus 93 DGlELLe~Ir~~~~IPVI--a~-------sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vl 147 (665)
+.+++++++|+..++|+| .| .......+|-++|+++.|.-.+..+|.......+.
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~ 128 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAA 128 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 357778888766778866 33 33445678889999999999898888877666653
No 236
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.68 E-value=24 Score=41.77 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=7.1
Q ss_pred cccCCcccccccc
Q 006006 633 KEEPNLEFVENAK 645 (665)
Q Consensus 633 ~~~~~~~~~~~~~ 645 (665)
.+||.|.+.|..|
T Consensus 280 ~~~~~iQi~~~CK 292 (1179)
T KOG3648|consen 280 EREPKIQVSELCK 292 (1179)
T ss_pred hcCchhhHHHHHH
Confidence 4556665555444
No 237
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=41.52 E-value=2.3e+02 Score=30.16 Aligned_cols=55 Identities=13% Similarity=0.211 Sum_probs=36.3
Q ss_pred HHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeE------EeCCCCHHHHHHHHHHHHH
Q 006006 94 GFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDY------LIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 94 GlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DY------LlKPv~~eEL~~aLq~Vlr 148 (665)
.+++++++++..++||| .-.+.+.+.+++..||+.. +..|.-..++++-+.+.+.
T Consensus 222 ~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~ 285 (301)
T PRK07259 222 ALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLD 285 (301)
T ss_pred cHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHH
Confidence 36788888776789999 3567888899999998643 3345444444444444443
No 238
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=41.20 E-value=1.7e+02 Score=30.62 Aligned_cols=111 Identities=20% Similarity=0.285 Sum_probs=70.2
Q ss_pred CccEEEEEeCCHHHHH--HHHHHHHhC---CC-EEEEECCHHHHHHHHHHcCCCceEEEEeC-------CCCCCCHHHHH
Q 006006 32 AGLRVLVVDDDITCLR--ILEQMLRRC---LY-NVTTCSQAAVALDILRERKGCFDVVLSDV-------HMPDMDGFKLL 98 (665)
Q Consensus 32 ~girVLIVDDD~~ire--~Lk~lL~~~---gy-~V~tAsngeEALelLre~k~~PDLVIlDI-------~MP~mDGlELL 98 (665)
.+..|+-+|--.--|- .+.+++... +. -..-|++.+|++...+.. +|+|=+=+ .-|...-++++
T Consensus 97 ~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G---~D~IGTTLsGYT~~~~~~~~pDf~lv 173 (229)
T COG3010 97 AGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLG---FDIIGTTLSGYTGYTEKPTEPDFQLV 173 (229)
T ss_pred CCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcC---CcEEecccccccCCCCCCCCCcHHHH
Confidence 4567777774321111 234444432 22 234688999999877543 78764322 22344558899
Q ss_pred HHHhccCCccEE---ecCchHHHHHHHHcCCCeEEeCC--CCHHHHHHHHHHH
Q 006006 99 EHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKP--IREEELKNIWQHV 146 (665)
Q Consensus 99 e~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlKP--v~~eEL~~aLq~V 146 (665)
+++.+ ..+++| -+..++.+.+|++.||+..+.-- -+++++......+
T Consensus 174 k~l~~-~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp~~It~~F~~~ 225 (229)
T COG3010 174 KQLSD-AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRPEEITQWFVDA 225 (229)
T ss_pred HHHHh-CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCHHHHHHHHHHH
Confidence 99865 778899 47889999999999999987654 2455555444443
No 239
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=41.16 E-value=1.7e+02 Score=30.04 Aligned_cols=79 Identities=16% Similarity=0.093 Sum_probs=49.7
Q ss_pred EEEEECCHHHHHHHHHHcC-CCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE--ecCchHHHHHHHHcCCCeEEeCCC
Q 006006 59 NVTTCSQAAVALDILRERK-GCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI--TDGRVSAVMRGIRHGACDYLIKPI 134 (665)
Q Consensus 59 ~V~tAsngeEALelLre~k-~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI--a~sd~e~a~kALe~GA~DYLlKPv 134 (665)
-|....+.+++++.++... ..+++|=+.+ -.-+.++.++++++. +++.|- .--+.+.+.+|+++||.-. .-|.
T Consensus 12 aVlr~~~~e~a~~~~~al~~~Gi~~iEit~--~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi-vsP~ 88 (204)
T TIGR01182 12 PVIRIDDVDDALPLAKALIEGGLRVLEVTL--RTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI-VSPG 88 (204)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCCEEEEeC--CCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE-ECCC
Confidence 4556677787777665431 2356444444 445688899998754 443333 4568889999999999655 4564
Q ss_pred CHHHHH
Q 006006 135 REEELK 140 (665)
Q Consensus 135 ~~eEL~ 140 (665)
...++.
T Consensus 89 ~~~~v~ 94 (204)
T TIGR01182 89 LTPELA 94 (204)
T ss_pred CCHHHH
Confidence 444443
No 240
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=40.44 E-value=2.2e+02 Score=25.56 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=12.8
Q ss_pred EeCCHHHHHHHHHHHHhCCCEEEE
Q 006006 39 VDDDITCLRILEQMLRRCLYNVTT 62 (665)
Q Consensus 39 VDDD~~ire~Lk~lL~~~gy~V~t 62 (665)
-|.+......+.+.|...||.+..
T Consensus 8 ~~~~k~~~~~~~~~l~~~G~~l~a 31 (110)
T cd01424 8 ADRDKPEAVEIAKRLAELGFKLVA 31 (110)
T ss_pred EcCcHhHHHHHHHHHHHCCCEEEE
Confidence 344444444455555556777653
No 241
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=40.30 E-value=2.3e+02 Score=29.45 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCCCC-CCH--HHHHHHHhccCCccEE---ecCchHHHHHHHHcC-CCeEEe------C
Q 006006 67 AVALDILRERKGCFD-VVLSDVHMPD-MDG--FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHG-ACDYLI------K 132 (665)
Q Consensus 67 eEALelLre~k~~PD-LVIlDI~MP~-mDG--lELLe~Ir~~~~IPVI---a~sd~e~a~kALe~G-A~DYLl------K 132 (665)
.+..+.+.+.. .| ++++|+.--+ +.| +++++++++...+||| ...+.+.+.++++.| |+..+. +
T Consensus 158 ~~~~~~l~~~G--~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 158 VEWAKEVEKLG--AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred HHHHHHHHHcC--CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 34445554443 67 4554542211 122 6888888877789999 456788888889888 887443 3
Q ss_pred CCCHHHHHHHHH
Q 006006 133 PIREEELKNIWQ 144 (665)
Q Consensus 133 Pv~~eEL~~aLq 144 (665)
-++.+++++.++
T Consensus 236 ~~~~~~~~~~~~ 247 (254)
T TIGR00735 236 EITIGEVKEYLA 247 (254)
T ss_pred CCCHHHHHHHHH
Confidence 455555554443
No 242
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=40.30 E-value=4.2e+02 Score=27.90 Aligned_cols=91 Identities=16% Similarity=0.073 Sum_probs=54.3
Q ss_pred EEEeC-CHHHHHHHHHHHHhCCCEE-EEECCHHHHHHHHHHcCCCceEEEEeCC---CCCCCHHHHHHHHhcc-C-CccE
Q 006006 37 LVVDD-DITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH---MPDMDGFKLLEHIGLE-M-DLPV 109 (665)
Q Consensus 37 LIVDD-D~~ire~Lk~lL~~~gy~V-~tAsngeEALelLre~k~~PDLVIlDI~---MP~mDGlELLe~Ir~~-~-~IPV 109 (665)
|++.+ ++...+.+.....+.+..+ ..+.+.+|+..... .. +|+|-+.-+ .-..| ++...++... + ..++
T Consensus 139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~-~g--adiIgin~rdl~~~~~d-~~~~~~l~~~~p~~~~v 214 (260)
T PRK00278 139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALK-LG--APLIGINNRNLKTFEVD-LETTERLAPLIPSDRLV 214 (260)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH-cC--CCEEEECCCCcccccCC-HHHHHHHHHhCCCCCEE
Confidence 33333 3334444444445556664 47888888866554 33 898875421 11223 5566666432 3 3466
Q ss_pred E---ecCchHHHHHHHHcCCCeEEe
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLl 131 (665)
| +-.+.+.+.++.++||+.++.
T Consensus 215 IaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 215 VSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 7 445788899999999999765
No 243
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=39.96 E-value=2e+02 Score=33.15 Aligned_cols=105 Identities=12% Similarity=0.065 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHhCC-CEEEEEC------CHHHHHHHHHHcCCCceEEEEeCCCCCC-CHHHHHHHHhc-cCCccEE-e
Q 006006 42 DITCLRILEQMLRRCL-YNVTTCS------QAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGL-EMDLPVI-T 111 (665)
Q Consensus 42 D~~ire~Lk~lL~~~g-y~V~tAs------ngeEALelLre~k~~PDLVIlDI~MP~m-DGlELLe~Ir~-~~~IPVI-a 111 (665)
.|+-...|...|+..| ++|..+. +.++..+.+++.. ||+|.+-..-+.. ...++++.+|+ .+.++|| +
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~~--pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~G 98 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAHC--PDLVLITAITPAIYIACETLKFARERLPNAIIVLG 98 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhcC--cCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEc
Confidence 5777888999998888 5776442 2344555666655 9999997655543 34567777764 4788887 2
Q ss_pred cCchH-HHHHHHH-cCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 112 DGRVS-AVMRGIR-HGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 112 ~sd~e-~a~kALe-~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
-.... ...++++ ....||+..--..+.+.+.++.+..
T Consensus 99 G~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~ 137 (497)
T TIGR02026 99 GIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAALEN 137 (497)
T ss_pred CCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHHHc
Confidence 11112 1234443 4567899988777777777776643
No 244
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=39.68 E-value=2.4e+02 Score=29.19 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCC----CCCCHHHHHHHHhccCCccEE---ecCchHHHHHHHHc-CCCeEEe------
Q 006006 67 AVALDILRERKGCFD-VVLSDVHM----PDMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRH-GACDYLI------ 131 (665)
Q Consensus 67 eEALelLre~k~~PD-LVIlDI~M----P~mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~-GA~DYLl------ 131 (665)
.+..+.+.+.. ++ ++++|+.- .+.| +++++++++...+||| ...+.+.+.++++. ||++.+.
T Consensus 156 ~~~~~~~~~~g--~~~ii~~~i~~~g~~~g~d-~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 156 VEWAKEVEELG--AGEILLTSMDRDGTKNGYD-LELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HHHHHHHHHcC--CCEEEEcCCcCCCCCCCcC-HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 44445554443 64 67766542 2222 6778888777789999 34567777788874 9987776
Q ss_pred CCCCHHHHHHHHH
Q 006006 132 KPIREEELKNIWQ 144 (665)
Q Consensus 132 KPv~~eEL~~aLq 144 (665)
.-++.+++++.+.
T Consensus 233 ~~~~~~~~~~~~~ 245 (253)
T PRK02083 233 GEITIGELKAYLA 245 (253)
T ss_pred CCCCHHHHHHHHH
Confidence 3456666655543
No 245
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=39.60 E-value=85 Score=35.03 Aligned_cols=84 Identities=15% Similarity=0.231 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE--ecCchHHHHHHHHcCCCeEEeCCCCHHHHHH
Q 006006 65 QAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI--TDGRVSAVMRGIRHGACDYLIKPIREEELKN 141 (665)
Q Consensus 65 ngeEALelLre~-k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI--a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~ 141 (665)
+.+..++.+.+. ....|| +-+-.|++.-.+.++.|++..++|+| .+-+...+.+|++.|++..=.=|=+.....+
T Consensus 40 Dv~atv~Qi~~L~~aGcei--VRvav~~~~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRINPGNig~~~~ 117 (360)
T PRK00366 40 DVEATVAQIKRLARAGCEI--VRVAVPDMEAAAALPEIKKQLPVPLVADIHFDYRLALAAAEAGADALRINPGNIGKRDE 117 (360)
T ss_pred hHHHHHHHHHHHHHcCCCE--EEEccCCHHHHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEEECCCCCCchHH
Confidence 444444444332 122564 45566899999999999888899999 4667777899999999999888976655555
Q ss_pred HHHHHHHHh
Q 006006 142 IWQHVVRKR 150 (665)
Q Consensus 142 aLq~Vlrk~ 150 (665)
.++.+++..
T Consensus 118 ~v~~vv~~a 126 (360)
T PRK00366 118 RVREVVEAA 126 (360)
T ss_pred HHHHHHHHH
Confidence 555555443
No 246
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=39.54 E-value=1.1e+02 Score=33.21 Aligned_cols=90 Identities=14% Similarity=0.195 Sum_probs=51.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC----CCE--E-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCc
Q 006006 35 RVLVVDDDITCLRILEQMLRRC----LYN--V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~~----gy~--V-~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~I 107 (665)
-|||=|.|-...-.+++.+++. ++. | ..+.+.+++.++++.. +|+|++|= |+...--+..+.++ ...-
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~ag---aDiImLDN-m~~e~~~~av~~l~-~~~~ 234 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAG---ADIIMLDN-MSPEELKEAVKLLG-LAGR 234 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcC---CCEEEecC-CCHHHHHHHHHHhc-cCCc
Confidence 3566666665555566666543 332 3 3789999999999754 89999994 33222222233321 2222
Q ss_pred cEE---ecCchHHHHHHHHcCCCeE
Q 006006 108 PVI---TDGRVSAVMRGIRHGACDY 129 (665)
Q Consensus 108 PVI---a~sd~e~a~kALe~GA~DY 129 (665)
.++ +.-..+.+.+....|++-+
T Consensus 235 ~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 235 ALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred eEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 233 3345666666667777543
No 247
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=39.50 E-value=1.5e+02 Score=29.11 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=46.7
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCC--------CCHHHHHHHHhcc-CCccEE--ecCchHHHHHHHHcCCCeE
Q 006006 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGLE-MDLPVI--TDGRVSAVMRGIRHGACDY 129 (665)
Q Consensus 61 ~tAsngeEALelLre~k~~PDLVIlDI~MP~--------mDGlELLe~Ir~~-~~IPVI--a~sd~e~a~kALe~GA~DY 129 (665)
.++.+.+++.+..+ .. +|.|.++-..+. ..|++.++.+.+. +.+||+ +--+.+.+.++++.|++++
T Consensus 101 ~s~h~~~e~~~a~~-~g--~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G~~gv 177 (196)
T TIGR00693 101 VSTHNLEELAEAEA-EG--ADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGITLENAAEVLAAGADGV 177 (196)
T ss_pred EeCCCHHHHHHHhH-cC--CCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEE
Confidence 36777777766443 33 899988755442 2378888888643 458888 3345677888889999886
Q ss_pred Ee
Q 006006 130 LI 131 (665)
Q Consensus 130 Ll 131 (665)
..
T Consensus 178 a~ 179 (196)
T TIGR00693 178 AV 179 (196)
T ss_pred EE
Confidence 54
No 248
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=39.26 E-value=3.5e+02 Score=29.12 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=65.0
Q ss_pred cEEEEEeC---CH-HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 006006 34 LRVLVVDD---DI-TCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (665)
Q Consensus 34 irVLIVDD---D~-~ire~Lk~lL~~~gy--~V~tAs--ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~ 105 (665)
++++||.+ +- ...+.++++.+..+. .|.... +.++..+.+.. .|+.++-.. .+.-|+.+++.+. .
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps~-~E~~g~~~lEAma--~ 325 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPSY-NESFGLVAMEAQA--C 325 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECCC-CCCcChHHHHHHH--c
Confidence 66677753 11 334455555555432 243322 33555555542 577766432 3344667777764 4
Q ss_pred CccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 106 DLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 106 ~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
.+|||+.+.. ...+.+..|..+++..|-+.++|.+++.+++.
T Consensus 326 G~Pvi~~~~~-~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 326 GTPVVAARVG-GLPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred CCCEEEecCC-CcHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 6888854322 23355678889999999999999999988875
No 249
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=39.10 E-value=1.8e+02 Score=31.67 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=42.9
Q ss_pred CHHHHHHHHhccCCccEE--e---cCchHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHHH
Q 006006 93 DGFKLLEHIGLEMDLPVI--T---DGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 149 (665)
Q Consensus 93 DGlELLe~Ir~~~~IPVI--a---~sd~e~a~kALe~GA~DYLl-----KPv~~eEL~~aLq~Vlrk 149 (665)
-++++++++++...+||| + -.+.+.+..++++||+++.. |.-++.+..+.+..++.+
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 478999999877789997 3 34778899999999999854 444677776666666554
No 250
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=38.94 E-value=3e+02 Score=30.63 Aligned_cols=107 Identities=11% Similarity=0.156 Sum_probs=63.4
Q ss_pred ccEEEEEeCCH-----HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 006006 33 GLRVLVVDDDI-----TCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (665)
Q Consensus 33 girVLIVDDD~-----~ire~Lk~lL~~~gy--~V~tAs--ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~ 103 (665)
.++++||.+.. ...+.|+++.+..+. .|.... +-++..++++. .|++|.=. ..+.=|+.++|.+.
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~----adv~v~~s-~~E~Fgi~~lEAMa- 346 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELST----ASIGLHTM-WNEHFGIGVVEYMA- 346 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHh----CeEEEECC-ccCCcccHHHHHHH-
Confidence 47888887642 345566666665433 344333 34555555543 47766532 22333777777764
Q ss_pred cCCccEEecCchHHHHHHHH---cCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 104 EMDLPVITDGRVSAVMRGIR---HGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 104 ~~~IPVIa~sd~e~a~kALe---~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
..+|+|+.+......+.++ .|..+|+.. +.+++.+++.+++.
T Consensus 347 -~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~ 391 (419)
T cd03806 347 -AGLIPLAHASGGPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILS 391 (419)
T ss_pred -cCCcEEEEcCCCCchheeeccCCCCceEEeC--CHHHHHHHHHHHHh
Confidence 3567774332222223344 688899963 89999999988875
No 251
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=38.91 E-value=23 Score=27.23 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=20.1
Q ss_pred HHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHH
Q 006006 247 ILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 280 (665)
Q Consensus 247 ILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~ 280 (665)
++.++.. |+++.+||.++|. +.+-+++..|++
T Consensus 10 ii~l~~~-G~s~~~ia~~lgv-s~~Tv~~w~kr~ 41 (50)
T PF13384_consen 10 IIRLLRE-GWSIREIAKRLGV-SRSTVYRWIKRY 41 (50)
T ss_dssp HHHHHHH-T--HHHHHHHHTS--HHHHHHHHT--
T ss_pred HHHHHHC-CCCHHHHHHHHCc-CHHHHHHHHHHc
Confidence 4455555 9999999999995 556677777775
No 252
>PRK09940 transcriptional regulator YdeO; Provisional
Probab=38.53 E-value=34 Score=36.25 Aligned_cols=32 Identities=9% Similarity=0.013 Sum_probs=27.5
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
...+++++|.++|.+. .+|.+.||+. |+||..
T Consensus 149 ~~~tl~~LA~~~gmS~-s~l~R~FK~~-G~T~~e 180 (253)
T PRK09940 149 HPWKLKDICDCLYISE-SLLKKKLKQE-QTTFSQ 180 (253)
T ss_pred CCCCHHHHHHHHCcCH-HHHHHHHHHc-CCCHHH
Confidence 4589999999998765 6999999997 999873
No 253
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=38.51 E-value=1.6e+02 Score=26.22 Aligned_cols=69 Identities=20% Similarity=0.152 Sum_probs=49.4
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCCC-CHHHHHHHHhc-cC-CccEE
Q 006006 40 DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGL-EM-DLPVI 110 (665)
Q Consensus 40 DDD~~ire~Lk~lL~~~gy~V~tA---sngeEALelLre~k~~PDLVIlDI~MP~m-DGlELLe~Ir~-~~-~IPVI 110 (665)
|.++.-...+..+++..++.+... ...++.++.+++.+ ||+|.+-..+... ..++.+..+++ .+ +++++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~~--pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~iv 84 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEED--ADVVGLSALSTTHMEAMKLVIEALKELGIDIPVV 84 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcC--CCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEE
Confidence 666777788888999999988744 35677777777765 9999999877553 34555556543 44 67777
No 254
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=38.17 E-value=4.3e+02 Score=26.52 Aligned_cols=74 Identities=14% Similarity=-0.016 Sum_probs=47.0
Q ss_pred hCCCEE-EEECCHHHHHHHHHHcCCCceEEEEeCCC--CCCCHHHHHHHHhcc--CCccEE---ecCchHHHHHHHHcCC
Q 006006 55 RCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHM--PDMDGFKLLEHIGLE--MDLPVI---TDGRVSAVMRGIRHGA 126 (665)
Q Consensus 55 ~~gy~V-~tAsngeEALelLre~k~~PDLVIlDI~M--P~mDGlELLe~Ir~~--~~IPVI---a~sd~e~a~kALe~GA 126 (665)
..+..+ ..+.+.+++.+..+ .. +|.+.+--.- ....++++++++++. ..+|+| .-.+.+.+.+++++||
T Consensus 119 ~~g~~~~v~v~~~~e~~~~~~-~g--~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga 195 (217)
T cd00331 119 ELGMEVLVEVHDEEELERALA-LG--AKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGA 195 (217)
T ss_pred HcCCeEEEEECCHHHHHHHHH-cC--CCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCC
Confidence 345554 35667777666554 33 7877654111 011235777887654 467888 4456788999999999
Q ss_pred CeEEe
Q 006006 127 CDYLI 131 (665)
Q Consensus 127 ~DYLl 131 (665)
++.+.
T Consensus 196 ~gviv 200 (217)
T cd00331 196 DAVLI 200 (217)
T ss_pred CEEEE
Confidence 99875
No 255
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=38.16 E-value=1.8e+02 Score=30.88 Aligned_cols=113 Identities=20% Similarity=0.187 Sum_probs=65.3
Q ss_pred CccEEEEEeCCHH-------HHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCH-----HHH
Q 006006 32 AGLRVLVVDDDIT-------CLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPDMDG-----FKL 97 (665)
Q Consensus 32 ~girVLIVDDD~~-------ire~Lk~lL~~~gy~V~t--AsngeEALelLre~k~~PDLVIlDI~MP~mDG-----lEL 97 (665)
..+|+=|+.|+.. ..+.-+. |-+.||.|.- ..+..-|.++.+ -. .. +++-+--|-.+| ...
T Consensus 92 ~wIKLEVi~D~~~L~PD~~etl~Aae~-Lv~eGF~VlPY~~~D~v~akrL~d-~G--ca-avMPlgsPIGSg~Gi~n~~~ 166 (247)
T PF05690_consen 92 NWIKLEVIGDDKTLLPDPIETLKAAEI-LVKEGFVVLPYCTDDPVLAKRLED-AG--CA-AVMPLGSPIGSGRGIQNPYN 166 (247)
T ss_dssp SEEEE--BS-TTT--B-HHHHHHHHHH-HHHTT-EEEEEE-S-HHHHHHHHH-TT---S-EBEEBSSSTTT---SSTHHH
T ss_pred CeEEEEEeCCCCCcCCChhHHHHHHHH-HHHCCCEEeecCCCCHHHHHHHHH-CC--CC-EEEecccccccCcCCCCHHH
Confidence 4467767766642 2333333 4455999874 344445544443 22 22 344455554443 356
Q ss_pred HHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEeC-----CCCHHHHHHHHHHHHHH
Q 006006 98 LEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVRK 149 (665)
Q Consensus 98 Le~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlK-----Pv~~eEL~~aLq~Vlrk 149 (665)
++.|++..++||| +-...+.+.+|+++|++..|+- --++..+.+++++++.-
T Consensus 167 l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~A 226 (247)
T PF05690_consen 167 LRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEA 226 (247)
T ss_dssp HHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHH
Confidence 7777766799988 5678899999999999999874 56777888888777653
No 256
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=37.98 E-value=1.5e+02 Score=29.14 Aligned_cols=75 Identities=15% Similarity=0.250 Sum_probs=51.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCEEEEEC-------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCS-------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~--gy~V~tAs-------ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir 102 (665)
.+.+|.++-..+...+.+.+.|+.. +..+..+. +..+.++.+.+.. ||+|++-+.+|... .++.+.+
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~--pdiv~vglG~PkQE--~~~~~~~ 120 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASG--ADILFVGLGAPKQE--LWIARHK 120 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcC--CCEEEEECCCCHHH--HHHHHHH
Confidence 4689999999999999988888775 34443321 1233467777665 99999999999865 3445554
Q ss_pred ccCCccEE
Q 006006 103 LEMDLPVI 110 (665)
Q Consensus 103 ~~~~IPVI 110 (665)
.....+++
T Consensus 121 ~~l~~~v~ 128 (171)
T cd06533 121 DRLPVPVA 128 (171)
T ss_pred HHCCCCEE
Confidence 44444544
No 257
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=37.84 E-value=88 Score=34.43 Aligned_cols=63 Identities=17% Similarity=0.073 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCC-CHHHHHHHHhcc-CCccEEe--cCchHHHHHHHHcCCCeEE
Q 006006 67 AVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGLE-MDLPVIT--DGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 67 eEALelLre~k~~PDLVIlDI~MP~m-DGlELLe~Ir~~-~~IPVIa--~sd~e~a~kALe~GA~DYL 130 (665)
+++.++++.. -.+|+|.+|.-.+.. .-.+++++|++. +.+|||+ -.+.+.+..++++||+..+
T Consensus 100 ~~~~~Lv~ag-~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 100 DFVDQLAAEG-LTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHhcC-CCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEE
Confidence 4555555432 025999999988764 356788888765 5688882 5688899999999998865
No 258
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=37.51 E-value=1.3e+02 Score=32.02 Aligned_cols=67 Identities=12% Similarity=0.034 Sum_probs=45.7
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE--ecCchHHHHHHHHcCCCeEEe
Q 006006 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI--TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 61 ~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI--a~sd~e~a~kALe~GA~DYLl 131 (665)
.++.+.+|+.+.++. .+|.|.+|-.-|. +--++++.++.. +++|++ +--+.+.+.+..+.||+.+..
T Consensus 188 Vev~t~eea~~A~~~---gaD~I~ld~~~p~-~l~~~~~~~~~~~~~i~i~AsGGI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 188 VEVDSLEEALAAAEA---GADILQLDKFSPE-ELAELVPKLRSLAPPVLLAAAGGINIENAAAYAAAGADILVT 257 (272)
T ss_pred EEcCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHHhccCCCceEEEECCCCHHHHHHHHHcCCcEEEE
Confidence 478899999988753 3899999954443 212344445443 467877 344678888889999988744
No 259
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=37.46 E-value=2.2e+02 Score=32.42 Aligned_cols=97 Identities=14% Similarity=0.258 Sum_probs=59.6
Q ss_pred CccEEEEEeC---CH-HHHHHHHHHHHhC-CCE--EEEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------C
Q 006006 32 AGLRVLVVDD---DI-TCLRILEQMLRRC-LYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (665)
Q Consensus 32 ~girVLIVDD---D~-~ire~Lk~lL~~~-gy~--V~tAsngeEALelLre~k~~PDLVIlDI~MP~------------m 92 (665)
++..++.||- +. ...+.++++-+.+ ... +..+.+.++|..+++.. .|.|.+-+. |+ .
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aG---ad~i~vg~g-~G~~~~t~~~~~~g~ 310 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAG---ADGLRVGIG-PGSICTTRIVAGVGV 310 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhC---CCEEEECCC-CCcCCccceecCCCc
Confidence 5688888887 43 3333444443332 222 34688889998888753 788755431 11 1
Q ss_pred CHHHHHHHH---hccCCccEE---ecCchHHHHHHHHcCCCeEEeC
Q 006006 93 DGFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 93 DGlELLe~I---r~~~~IPVI---a~sd~e~a~kALe~GA~DYLlK 132 (665)
--+.++..+ .+...+||| .......+.+|+.+||+....=
T Consensus 311 p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 311 PQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred cHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 123343333 233578999 3567888999999999988763
No 260
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=37.28 E-value=2.1e+02 Score=30.04 Aligned_cols=105 Identities=15% Similarity=0.132 Sum_probs=63.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEecC
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITDG 113 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~s 113 (665)
.+++|+.+.+.. +.+++.+ .....+.-.-+.++..+++.. .|++++-.. +.-|+-+++.+. ..+|||+.+
T Consensus 222 ~~l~ivG~g~~~-~~l~~~~-~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eama--~G~Pvi~~~ 291 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRAKA-GPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAMA--SGTPVIAYG 291 (351)
T ss_pred CcEEEEECChhH-HHHHhhc-CCCEEEecCCCHHHHHHHHHh----CCEEEECCc--CCCCchHHHHHH--cCCCEEEeC
Confidence 677888776643 2333311 112222233345566666653 577776544 334566666664 457888433
Q ss_pred chHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 114 RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 114 d~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
.. ...+.+..|..+++..|-+.++|.+++..++..
T Consensus 292 ~~-~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 292 KG-GALETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred CC-CCcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 22 233456677889999999999999999887654
No 261
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=37.24 E-value=1.1e+02 Score=34.57 Aligned_cols=51 Identities=20% Similarity=0.138 Sum_probs=40.9
Q ss_pred ceEEEEeCCCCC-CCHHHHHHHHhcc-CCccEE--ecCchHHHHHHHHcCCCeEE
Q 006006 80 FDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVI--TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 80 PDLVIlDI~MP~-mDGlELLe~Ir~~-~~IPVI--a~sd~e~a~kALe~GA~DYL 130 (665)
+|+|++|.--+. ..-++++++|++. +++++| .-...+.+..++++||+...
T Consensus 166 vDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 166 VDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred CCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEE
Confidence 999999997764 4566888888764 678887 46788889999999998865
No 262
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=37.12 E-value=1.4e+02 Score=30.90 Aligned_cols=84 Identities=21% Similarity=0.243 Sum_probs=53.8
Q ss_pred hHHHHHHhcCCC-----CCcceee-eeccCCCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHH
Q 006006 3 ALQRIVQSSGGS-----GYGSSRA-ADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDIL 73 (665)
Q Consensus 3 i~~~~V~~mgGs-----g~Gs~f~-~~~~~~d~fP~girVLIVDDD~~ire~Lk~lL~~~gy~--V~-tAsngeEALelL 73 (665)
.++.++.+.++. |.|..+. +-++ ...+..-+|.-+|-++...+..++.++..++. +. ...++.+.+..+
T Consensus 59 ~L~~l~~~~~~~~vLEiGt~~G~s~l~la--~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 59 FLSMLVKIMNAKNTLEIGVFTGYSLLTTA--LALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQL 136 (234)
T ss_pred HHHHHHHHhCCCEEEEecCcccHHHHHHH--HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHH
Confidence 455666776662 3333321 1121 12343459999999999999999999887652 33 456777777766
Q ss_pred HHc--CCCceEEEEeCC
Q 006006 74 RER--KGCFDVVLSDVH 88 (665)
Q Consensus 74 re~--k~~PDLVIlDI~ 88 (665)
... ...||+|++|..
T Consensus 137 ~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 137 LNNDPKPEFDFAFVDAD 153 (234)
T ss_pred HhCCCCCCCCEEEECCC
Confidence 432 235999999975
No 263
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=36.85 E-value=2.7e+02 Score=29.01 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=70.6
Q ss_pred ccEEEEEeCCHH----HHHHHHHHHHhCCCEEE--EECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHHHHH
Q 006006 33 GLRVLVVDDDIT----CLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHI 101 (665)
Q Consensus 33 girVLIVDDD~~----ire~Lk~lL~~~gy~V~--tAsngeEALelLre~k~~PDLVIlDI~MP-----~mDGlELLe~I 101 (665)
.+.+-|-|.... ....+-..|+..|+.+. -+.+|-..+..+.+.+ ||+|=+|-.+- ......+++.|
T Consensus 121 ~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l~--~d~iKID~~fi~~i~~~~~~~~iv~~i 198 (256)
T COG2200 121 RLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSSLSYLKRLP--PDILKIDRSFVRDLETDARDQAIVRAI 198 (256)
T ss_pred eEEEEEeCchhhcCHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhhCC--CCeEEECHHHHhhcccCcchHHHHHHH
Confidence 444555554331 23334444556677654 6889999999999887 99999996442 22333455555
Q ss_pred ---hccCCccEE--ecCchHHHHHHHHcCCC----eEEeCCCCHHHHHHHHH
Q 006006 102 ---GLEMDLPVI--TDGRVSAVMRGIRHGAC----DYLIKPIREEELKNIWQ 144 (665)
Q Consensus 102 ---r~~~~IPVI--a~sd~e~a~kALe~GA~----DYLlKPv~~eEL~~aLq 144 (665)
.+...+.+| .-.+.+......+.|++ .|+.||...+++...+.
T Consensus 199 v~la~~l~~~vvaEGVEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~ 250 (256)
T COG2200 199 VALAHKLGLTVVAEGVETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLS 250 (256)
T ss_pred HHHHHHCCCEEEEeecCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHh
Confidence 234567777 45566666677788886 35788999877765553
No 264
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=36.77 E-value=1.1e+02 Score=29.45 Aligned_cols=53 Identities=28% Similarity=0.318 Sum_probs=43.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC----CHHHHHHHHHHcCCCceEEEEeCCCCC
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCS----QAAVALDILRERKGCFDVVLSDVHMPD 91 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAs----ngeEALelLre~k~~PDLVIlDI~MP~ 91 (665)
.+-+|+|+.......+-|..+|.+.+..|+.+. +.+++ ++ . -|||++-..-+.
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~---v~--~--ADIVvsAtg~~~ 83 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSK---VH--D--ADVVVVGSPKPE 83 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHH---Hh--h--CCEEEEecCCCC
Confidence 567999999999999999999999899999887 44433 32 2 699999886664
No 265
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=35.97 E-value=2.4e+02 Score=33.46 Aligned_cols=95 Identities=17% Similarity=0.134 Sum_probs=66.0
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCC-C----CCHHHHHHHH---hccCCccEE--ecCchH
Q 006006 49 LEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMP-D----MDGFKLLEHI---GLEMDLPVI--TDGRVS 116 (665)
Q Consensus 49 Lk~lL~~~gy~V~t--AsngeEALelLre~k~~PDLVIlDI~MP-~----mDGlELLe~I---r~~~~IPVI--a~sd~e 116 (665)
....|+..|+.+.. +.++-..+..+...+ ||.|-+|-.+- + .....+++.+ .....+.+| .-.+.+
T Consensus 683 ~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l~--~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~via~gVe~~~ 760 (799)
T PRK11359 683 RIQILRDMGVGLSVDDFGTGFSGLSRLVSLP--VTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKE 760 (799)
T ss_pred HHHHHHHCCCEEEEECCCCchhhHHHHhhCC--CCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEEEEcCCCHH
Confidence 33456667888754 667778888888776 99999997442 1 1233445544 244678888 456777
Q ss_pred HHHHHHHcCCC----eEEeCCCCHHHHHHHHHH
Q 006006 117 AVMRGIRHGAC----DYLIKPIREEELKNIWQH 145 (665)
Q Consensus 117 ~a~kALe~GA~----DYLlKPv~~eEL~~aLq~ 145 (665)
....+.+.|++ .|+.||...++|...++.
T Consensus 761 ~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 761 QFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred HHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 77778889986 368899999999876544
No 266
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.88 E-value=2.7e+02 Score=28.64 Aligned_cols=89 Identities=15% Similarity=0.026 Sum_probs=58.0
Q ss_pred HHHHhCC-CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC-c--cEE---ecCchHHHHHHHH
Q 006006 51 QMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD-L--PVI---TDGRVSAVMRGIR 123 (665)
Q Consensus 51 ~lL~~~g-y~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~-I--PVI---a~sd~e~a~kALe 123 (665)
+.|...+ .-|....+.++++.+++... .-.+=++.+-|-.-++++.++.+++... - -+| .--+.+.+.+|++
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~-~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~ 86 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVI-KGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL 86 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH
Confidence 3444433 45667788888888777532 1244466777767779999999975432 1 234 4568888999999
Q ss_pred cCCCeEEeCCCCHHHHHH
Q 006006 124 HGACDYLIKPIREEELKN 141 (665)
Q Consensus 124 ~GA~DYLlKPv~~eEL~~ 141 (665)
+||. ||.-|.-..++.+
T Consensus 87 aGA~-FivsP~~~~~v~~ 103 (213)
T PRK06552 87 AGAQ-FIVSPSFNRETAK 103 (213)
T ss_pred cCCC-EEECCCCCHHHHH
Confidence 9996 5555655555543
No 267
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=35.53 E-value=2.5e+02 Score=26.27 Aligned_cols=52 Identities=19% Similarity=0.047 Sum_probs=35.7
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 80 FDVVLSDVHMPDMDG-------FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 80 PDLVIlDI~MP~mDG-------lELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
.|.|.++-..+...+ ...+..++....+||+ .-.+.+.+.++++.||+.+..
T Consensus 137 ~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 137 VDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 788888877665332 2445555556778988 344557888899999988753
No 268
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=35.36 E-value=94 Score=33.06 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=39.4
Q ss_pred HHHHHHHHhccCCccEE--ec-------CchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006006 94 GFKLLEHIGLEMDLPVI--TD-------GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146 (665)
Q Consensus 94 GlELLe~Ir~~~~IPVI--a~-------sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~V 146 (665)
.+++++++|+...+|+| +| .-..+..+|.++|+++.|.--+..+|....++.+
T Consensus 79 ~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 79 ILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 47777888766778866 33 3345678899999999999888888876655554
No 269
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=35.25 E-value=78 Score=33.94 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=67.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE-ec
Q 006006 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI-TD 112 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI-a~ 112 (665)
.|-+.=.++.+...+.++|....|.+..+.++++.++.++.+++.+|.+|+..... -..+..++.+. .-+|+| ..
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~~---~~~~~~~L~e~g~LLPaVil~ 78 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSPL---LPPLFNQLYEQGILLPAVILG 78 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTST---THHHHHHHHHCT----EEEES
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCCC---cHHHHHHHHHcCccccEEEEe
Confidence 45556667888889999999889999999999999999998888899999987553 35567777544 456766 21
Q ss_pred CchH----HHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 113 GRVS----AVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 113 sd~e----~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
.... .....+.......-++.-..++|-..|.+++.+-
T Consensus 79 ~~~s~~~~~~~~~~~YH~aEV~L~~~qL~ql~~~ID~AIsrF 120 (283)
T PF07688_consen 79 SSESASTTSESGTVLYHSAEVHLPIDQLEQLSYNIDQAISRF 120 (283)
T ss_dssp ---S--TTS--SSGSSBTT-EEE-CCGTTCHHHHHHHHHHHH
T ss_pred cCcccccCCCCCceeeehHheEccHHHHHHHHHHHHHHHHHH
Confidence 1111 0111112222333444555677777777776554
No 270
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=35.11 E-value=2e+02 Score=28.17 Aligned_cols=67 Identities=18% Similarity=0.123 Sum_probs=46.7
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCCC-------CHHHHHHHHhccCCccEE--ecCchHHHHHHHHcCCCeEE
Q 006006 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDM-------DGFKLLEHIGLEMDLPVI--TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 61 ~tAsngeEALelLre~k~~PDLVIlDI~MP~m-------DGlELLe~Ir~~~~IPVI--a~sd~e~a~kALe~GA~DYL 130 (665)
.+|.+.+|+.++.+ .. +|-|++---.|.. -|++.++++.+...+||+ +--+.+.+.++.+.||++.-
T Consensus 100 ~S~h~~~e~~~a~~-~g--~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 100 ASCHSLEEAREAEE-LG--ADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGITPENIPELREAGADGVA 175 (180)
T ss_dssp EEESSHHHHHHHHH-CT--TSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS--TTTHHHHHHTT-SEEE
T ss_pred eecCcHHHHHHhhh-cC--CCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcCCCEEE
Confidence 47889999666554 33 8999988765543 389999988877779988 33456667788899998864
No 271
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.84 E-value=1.2e+02 Score=32.54 Aligned_cols=89 Identities=11% Similarity=0.159 Sum_probs=52.8
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CCC---EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh---c-c
Q 006006 36 VLVVDDDITCLRILEQMLRR----CLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG---L-E 104 (665)
Q Consensus 36 VLIVDDD~~ire~Lk~lL~~----~gy---~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir---~-~ 104 (665)
|||=|.|-.....+...++. ..+ ....+.+.+||++.++.. +|+|.+|= | +--++.+.++ . .
T Consensus 155 vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~G---aDiI~LDn-~---~~e~l~~~v~~~~~~~ 227 (273)
T PRK05848 155 LMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNAG---ADIVMCDN-M---SVEEIKEVVAYRNANY 227 (273)
T ss_pred hCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcC---CCEEEECC-C---CHHHHHHHHHHhhccC
Confidence 55555554444444444432 232 234789999999999743 89999884 3 3222222222 1 2
Q ss_pred CCccEE--ecCchHHHHHHHHcCCCeEEe
Q 006006 105 MDLPVI--TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 105 ~~IPVI--a~sd~e~a~kALe~GA~DYLl 131 (665)
+.+.++ +.-+.+.+.+..+.||+.+.+
T Consensus 228 ~~~~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 228 PHVLLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred CCeEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 345455 334788888999999976543
No 272
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=34.76 E-value=1.1e+02 Score=34.77 Aligned_cols=61 Identities=18% Similarity=0.148 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhcc-CCccEE--ecCchHHHHHHHHcCCCeEE
Q 006006 67 AVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVI--TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 67 eEALelLre~k~~PDLVIlDI~MP~-mDGlELLe~Ir~~-~~IPVI--a~sd~e~a~kALe~GA~DYL 130 (665)
+.+..+++. .+|+|.+|..-.. ...++.+++|++. +++||| .-.+.+.+..++++||+...
T Consensus 227 ~r~~~L~~a---G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 227 ERAEALVKA---GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred HHHHHHHHh---CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEE
Confidence 444444442 3899999984332 4567788888766 789988 46688889999999998873
No 273
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=34.67 E-value=2.2e+02 Score=31.09 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=43.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHHcC-CCceEEEEeCCCC
Q 006006 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERK-GCFDVVLSDVHMP 90 (665)
Q Consensus 30 fP~girVLIVDDD~~ire~Lk~lL~~~gy~V~-tAsngeEALelLre~k-~~PDLVIlDI~MP 90 (665)
.+. .+|+-+|-|+......++.|....-++. ...+..+..+.+.+.. ..+|.|++|+-..
T Consensus 42 l~~-g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~DLGvS 103 (305)
T TIGR00006 42 LGT-GRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELLVTKIDGILVDLGVS 103 (305)
T ss_pred CCC-CEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCCCcccEEEEeccCC
Confidence 444 6899999999999999888876433443 5567777767665532 2489999998553
No 274
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=34.46 E-value=98 Score=30.79 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=50.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC------CC-EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CC
Q 006006 35 RVLVVDDDITCLRILEQMLRRC------LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MD 106 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~~------gy-~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~ 106 (665)
.|||=|.+-.+.-.+.+.++.. .. ....+.+.+++.+.++.. +|+|.+|=.-| .+=-++++.++.. +.
T Consensus 52 ~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g---~d~I~lD~~~~-~~~~~~v~~l~~~~~~ 127 (169)
T PF01729_consen 52 MILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAG---ADIIMLDNMSP-EDLKEAVEELRELNPR 127 (169)
T ss_dssp SEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT----SEEEEES-CH-HHHHHHHHHHHHHTTT
T ss_pred cEEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhC---CCEEEecCcCH-HHHHHHHHHHhhcCCc
Confidence 3555555554444344444332 22 234789999999998753 89999996443 2223344444333 34
Q ss_pred ccEE--ecCchHHHHHHHHcCCCeEE
Q 006006 107 LPVI--TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 107 IPVI--a~sd~e~a~kALe~GA~DYL 130 (665)
+.+. +.-+.+.+.+-.+.|+|.+-
T Consensus 128 v~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 128 VKIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp SEEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred EEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 4444 33456666666788876653
No 275
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=34.30 E-value=1.7e+02 Score=29.95 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=47.5
Q ss_pred ECCHHHHHHHHHHcCCCce-EEEEeCCCCC---CCHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 63 CSQAAVALDILRERKGCFD-VVLSDVHMPD---MDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 63 AsngeEALelLre~k~~PD-LVIlDI~MP~---mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
..+..+..+.+.+.. +| |+++|+.--+ ..-+++++++++...+||+ .-.+.+.+.+.++.|++..+.
T Consensus 26 ~~d~~~~a~~~~~~G--~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 26 AGDPVELAKRYNEQG--ADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCCHHHHHHHHHHCC--CCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence 336777777776654 55 8888886422 1236788888777778998 456778888889999876654
No 276
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=34.26 E-value=2.1e+02 Score=31.05 Aligned_cols=86 Identities=13% Similarity=0.095 Sum_probs=59.3
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCC---------------------------------C--CCCCHHHHHHHHhccC
Q 006006 61 TTCSQAAVALDILRERKGCFDVVLSDVH---------------------------------M--PDMDGFKLLEHIGLEM 105 (665)
Q Consensus 61 ~tAsngeEALelLre~k~~PDLVIlDI~---------------------------------M--P~mDGlELLe~Ir~~~ 105 (665)
.-|++.+||+..++.. +|+|=+=+. . ...-++++++++++..
T Consensus 117 AD~stleEal~a~~~G---ad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~ 193 (283)
T cd04727 117 CGARNLGEALRRISEG---AAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG 193 (283)
T ss_pred ccCCCHHHHHHHHHCC---CCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc
Confidence 4678889999888653 788776540 0 1224788999997766
Q ss_pred CccEE--e---cCchHHHHHHHHcCCCeEEeC-----CCCHHHHHHHHHHHHHH
Q 006006 106 DLPVI--T---DGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVRK 149 (665)
Q Consensus 106 ~IPVI--a---~sd~e~a~kALe~GA~DYLlK-----Pv~~eEL~~aLq~Vlrk 149 (665)
.+||| + -.+.+.+.++++.||+.++.= .-++.+..+.+..++.+
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 78985 3 347788999999999998653 33566665555555544
No 277
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.18 E-value=3e+02 Score=27.56 Aligned_cols=82 Identities=12% Similarity=0.101 Sum_probs=54.4
Q ss_pred CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEeCCC
Q 006006 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPI 134 (665)
Q Consensus 58 y~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlKPv 134 (665)
.-|....+.+++++.++..- .-.+=++.+++...+..++++.+++....-.+ ..-..+.+..|++.||+..++--+
T Consensus 15 ~~v~r~~~~~~~~~~~~~~~-~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~ 93 (187)
T PRK07455 15 IAVIRAPDLELGLQMAEAVA-AGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHV 93 (187)
T ss_pred EEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCC
Confidence 45667788888888776532 12344667777888889998888654333222 222347888899999988777656
Q ss_pred CHHHHH
Q 006006 135 REEELK 140 (665)
Q Consensus 135 ~~eEL~ 140 (665)
+.+.+.
T Consensus 94 ~~~~~~ 99 (187)
T PRK07455 94 DPELIE 99 (187)
T ss_pred CHHHHH
Confidence 655443
No 278
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=34.04 E-value=79 Score=33.34 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=38.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHHcCCCceEEEEeCCC
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCS-------QAAVALDILRERKGCFDVVLSDVHM 89 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAs-------ngeEALelLre~k~~PDLVIlDI~M 89 (665)
|||||+...-.+-..|.+.|...+++|.... +.++..+.+++.+ ||+||-=.-+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~--pd~Vin~aa~ 61 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFK--PDVVINCAAY 61 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH----SEEEE----
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhC--CCeEecccee
Confidence 7999999999999999999998788877652 5566667777766 9988765543
No 279
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=34.04 E-value=4.9e+02 Score=31.07 Aligned_cols=104 Identities=12% Similarity=0.074 Sum_probs=64.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy--~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI 110 (665)
.++++||.|.+. ++.++++++..+. .|......++.-+.+.. .|+.++=-. .+.-|+.+++.+. ..+|||
T Consensus 429 dirLvIVGdG~~-~eeLk~la~elgL~d~V~FlG~~~Dv~~~Laa----ADVfVlPS~-~EGfp~vlLEAMA--~GlPVV 500 (578)
T PRK15490 429 ATRFVLVGDGDL-RAEAQKRAEQLGILERILFVGASRDVGYWLQK----MNVFILFSR-YEGLPNVLIEAQM--VGVPVI 500 (578)
T ss_pred CeEEEEEeCchh-HHHHHHHHHHcCCCCcEEECCChhhHHHHHHh----CCEEEEccc-ccCccHHHHHHHH--hCCCEE
Confidence 467888877653 4556666665543 35544444444444432 587776332 2444677777764 468999
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHH
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 145 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~ 145 (665)
+.+. ....+.+..|..+|+.+|-+.+.|.+.+..
T Consensus 501 ATdv-GG~~EiV~dG~nG~LVp~~D~~aLa~ai~l 534 (578)
T PRK15490 501 STPA-GGSAECFIEGVSGFILDDAQTVNLDQACRY 534 (578)
T ss_pred EeCC-CCcHHHcccCCcEEEECCCChhhHHHHHHH
Confidence 4432 234466778999999999988888766543
No 280
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=33.82 E-value=5.3e+02 Score=29.04 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=56.7
Q ss_pred HHHHHhCCCEEEE----ECCHHHHHHHHHHcCCCceEEEEeCCC----CCCCHHHHHHHHhccCCccEE--ecCchHHHH
Q 006006 50 EQMLRRCLYNVTT----CSQAAVALDILRERKGCFDVVLSDVHM----PDMDGFKLLEHIGLEMDLPVI--TDGRVSAVM 119 (665)
Q Consensus 50 k~lL~~~gy~V~t----AsngeEALelLre~k~~PDLVIlDI~M----P~mDGlELLe~Ir~~~~IPVI--a~sd~e~a~ 119 (665)
.+..++.+..+.. +.+..+.+..+.+.. .|.|.+..-. ....+++.+++++....+||+ .--..+.+.
T Consensus 100 i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~G--aD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI~~~n~~ 177 (430)
T PRK07028 100 VRAARKYGVRLMADLINVPDPVKRAVELEELG--VDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGLDAETAA 177 (430)
T ss_pred HHHHHHcCCEEEEEecCCCCHHHHHHHHHhcC--CCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEECCCCHHHHH
Confidence 3344445555442 233333333333333 8888765321 124678888888766668887 333567788
Q ss_pred HHHHcCCCeEE-----eCCCCHHHHHHHHHHHHHH
Q 006006 120 RGIRHGACDYL-----IKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 120 kALe~GA~DYL-----lKPv~~eEL~~aLq~Vlrk 149 (665)
++++.||+.++ .+.-++.+..+.+++.+++
T Consensus 178 ~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~ 212 (430)
T PRK07028 178 KAVAAGADIVIVGGNIIKSADVTEAARKIREAIDS 212 (430)
T ss_pred HHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence 89999998654 4444555555555555443
No 281
>PF12833 HTH_18: Helix-turn-helix domain; PDB: 2K9S_A 3LSG_C 3OIO_A 1D5Y_B 3GBG_A 3OOU_A 1BL0_A 1XS9_A 3MN2_B 3MKL_B ....
Probab=33.81 E-value=27 Score=29.29 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=19.0
Q ss_pred HHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 261 VASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 261 VAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
||.++|. +.+||.+.||+.+|+||..
T Consensus 1 lA~~~~~-s~~~l~~~f~~~~g~s~~~ 26 (81)
T PF12833_consen 1 LADELGM-SERYLSRIFKKETGMSFKQ 26 (81)
T ss_dssp HHHHCTS--HHHHHHHHHHHHSS-HHH
T ss_pred ChHHhCc-CHHHHHHHHHHHHCcCHHH
Confidence 4555553 4589999999999999973
No 282
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=33.48 E-value=1.3e+02 Score=29.57 Aligned_cols=65 Identities=11% Similarity=0.038 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCC-------HHHHHHHHhcc-----CCccEE--ecCchHHHHHHHHcCCCeEE
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMD-------GFKLLEHIGLE-----MDLPVI--TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mD-------GlELLe~Ir~~-----~~IPVI--a~sd~e~a~kALe~GA~DYL 130 (665)
+..+.++.+... +|.|+++-.-|+.+ +++.++++++. ..+|++ .--..+.+.++++.||+.++
T Consensus 115 t~~e~~~~~~~~---~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~ii 191 (210)
T TIGR01163 115 TPLEFLEYVLPD---VDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADILV 191 (210)
T ss_pred CCHHHHHHHHhh---CCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCEEE
Confidence 445555555432 68777765444433 33444444321 235665 33356778888999999876
Q ss_pred eC
Q 006006 131 IK 132 (665)
Q Consensus 131 lK 132 (665)
.-
T Consensus 192 vg 193 (210)
T TIGR01163 192 AG 193 (210)
T ss_pred EC
Confidence 64
No 283
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=33.45 E-value=1.5e+02 Score=34.53 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=43.2
Q ss_pred HHHHHHHHcCCCceEEEEeCCCCCC--CHHHHHHHHhcc-CCccEE--ecCchHHHHHHHHcCCCeEEe
Q 006006 68 VALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLE-MDLPVI--TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 68 EALelLre~k~~PDLVIlDI~MP~m--DGlELLe~Ir~~-~~IPVI--a~sd~e~a~kALe~GA~DYLl 131 (665)
|-.+.+-+.. .|+|.+|.- .+. .-++++++||+. ++++|| .-...+.+..++++||+....
T Consensus 251 ~r~~~l~~ag--~d~i~iD~~-~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 251 ERLEHLVKAG--VDVVVLDSS-QGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred HHHHHHHHcC--CCEEEEeCC-CCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEE
Confidence 3334444433 999999983 222 234788899764 678887 367888999999999998754
No 284
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.16 E-value=3.7e+02 Score=28.02 Aligned_cols=88 Identities=8% Similarity=-0.025 Sum_probs=54.3
Q ss_pred HHHHhCC-CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-----CCccEE---ecCchHHHHHH
Q 006006 51 QMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-----MDLPVI---TDGRVSAVMRG 121 (665)
Q Consensus 51 ~lL~~~g-y~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-----~~IPVI---a~sd~e~a~kA 121 (665)
+.|.+.+ .-|....+.++|++.++...+ -.|=++.+-|-.-++++.++.++.. +++ +| .--+.+.+.+|
T Consensus 10 ~~l~~~~vi~Vvr~~~~~~a~~~~~al~~-gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~-~vGaGTVl~~e~a~~a 87 (222)
T PRK07114 10 TAMKATGMVPVFYHADVEVAKKVIKACYD-GGARVFEFTNRGDFAHEVFAELVKYAAKELPGM-ILGVGSIVDAATAALY 87 (222)
T ss_pred HHHHhCCEEEEEEcCCHHHHHHHHHHHHH-CCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCe-EEeeEeCcCHHHHHHH
Confidence 3444433 456677888888887765321 2333566666666788888887521 222 34 45688889999
Q ss_pred HHcCCCeEEeCCCCHHHHH
Q 006006 122 IRHGACDYLIKPIREEELK 140 (665)
Q Consensus 122 Le~GA~DYLlKPv~~eEL~ 140 (665)
+++||.-.+.--++++-+.
T Consensus 88 ~~aGA~FiVsP~~~~~v~~ 106 (222)
T PRK07114 88 IQLGANFIVTPLFNPDIAK 106 (222)
T ss_pred HHcCCCEEECCCCCHHHHH
Confidence 9999965555434444443
No 285
>PRK07695 transcriptional regulator TenI; Provisional
Probab=33.06 E-value=3.2e+02 Score=27.15 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=45.1
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCccEE--ecCchHHHHHHHHcCCCeE
Q 006006 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVI--TDGRVSAVMRGIRHGACDY 129 (665)
Q Consensus 62 tAsngeEALelLre~k~~PDLVIlDI~MP~-------mDGlELLe~Ir~~~~IPVI--a~sd~e~a~kALe~GA~DY 129 (665)
++.+.+++.+..+ .. .|.|++.-..|. ..|++.++.+.....+||+ +--+.+.+.++++.|++.+
T Consensus 101 s~~s~e~a~~a~~-~G--adyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 101 SVHSLEEAIQAEK-NG--ADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGITPENTRDVLAAGVSGI 174 (201)
T ss_pred eCCCHHHHHHHHH-cC--CCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcCCCEE
Confidence 5677777765443 33 899987643322 2367888888766678988 3346777888999999876
No 286
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=32.99 E-value=1.3e+02 Score=32.65 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=56.5
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCC--------CCCCCHHHHHHHHhccCCccEE----ecCchHHHHHHHHcCCCeEE
Q 006006 63 CSQAAVALDILRERKGCFDVVLSDVH--------MPDMDGFKLLEHIGLEMDLPVI----TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 63 AsngeEALelLre~k~~PDLVIlDI~--------MP~mDGlELLe~Ir~~~~IPVI----a~sd~e~a~kALe~GA~DYL 130 (665)
.++.++|.+.+++.. +|.+=+-+- -|..| ++++++|++..++|++ .....+..++|++.|+.-.=
T Consensus 154 ~T~peea~~Fv~~Tg--vD~LAvaiGt~HG~Y~~~p~Ld-fd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~KiN 230 (286)
T PRK12738 154 LTDPQEAKRFVELTG--VDSLAVAIGTAHGLYSKTPKID-FQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVN 230 (286)
T ss_pred CCCHHHHHHHHHHhC--CCEEEeccCcccCCCCCCCcCC-HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEE
Confidence 567889999998876 898877762 35556 8899999877789988 22346778899999965442
Q ss_pred eCCCCHHHHHHHHHHHHHHh
Q 006006 131 IKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 131 lKPv~~eEL~~aLq~Vlrk~ 150 (665)
. -.+|+.++.+.++..
T Consensus 231 i----~T~l~~a~~~~~~~~ 246 (286)
T PRK12738 231 V----ATELKIAFAGAVKAW 246 (286)
T ss_pred e----CcHHHHHHHHHHHHH
Confidence 2 235555555555443
No 287
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=32.77 E-value=3.1e+02 Score=28.07 Aligned_cols=96 Identities=24% Similarity=0.323 Sum_probs=50.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CC-------------EEEEECCHHHHHHHHHHcC-CCceEEEEeCC-CCCCCHHHH
Q 006006 35 RVLVVDDDITCLRILEQMLRRC--LY-------------NVTTCSQAAVALDILRERK-GCFDVVLSDVH-MPDMDGFKL 97 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~~--gy-------------~V~tAsngeEALelLre~k-~~PDLVIlDI~-MP~mDGlEL 97 (665)
+-.||.--+.-++.+++++.-+ |+ .|..+.+.++|++.+++.. ..|-+|-+|.+ -|..-.++-
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~ 123 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAE 123 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHH
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHH
Confidence 5677777777788888887632 22 2788999999999998632 34999999998 344445555
Q ss_pred HHHHhccCCccEE-----ecCchHHHHHHHHcCCCeEEeCCCC
Q 006006 98 LEHIGLEMDLPVI-----TDGRVSAVMRGIRHGACDYLIKPIR 135 (665)
Q Consensus 98 Le~Ir~~~~IPVI-----a~sd~e~a~kALe~GA~DYLlKPv~ 135 (665)
+++.-...+-|++ +..-.+.++ ..+||++.|+.
T Consensus 124 lr~~l~~~~~P~LllFGTGwGL~~ev~-----~~~D~iLePI~ 161 (185)
T PF09936_consen 124 LRRMLEEEDRPVLLLFGTGWGLAPEVM-----EQCDYILEPIR 161 (185)
T ss_dssp HHHHHHH--S-EEEEE--TT---HHHH-----TT-SEEB--TT
T ss_pred HHHHHhccCCeEEEEecCCCCCCHHHH-----HhcCeeEcccc
Confidence 5544222333433 333333332 35799999975
No 288
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=32.71 E-value=51 Score=32.83 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=45.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCC--CCCCCH--HHHHHHHhccCCccEE
Q 006006 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMDG--FKLLEHIGLEMDLPVI 110 (665)
Q Consensus 36 VLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~--MP~mDG--lELLe~Ir~~~~IPVI 110 (665)
|||||...-+-..|.++|...+..+..+.+.+..++.+.... ||.||+-=- -|..++ .++++.+ ...+|++
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~--~d~iils~GPg~p~~~~~~~~~~~~~--~~~~PiL 76 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALK--PQKIVISPGPCTPDEAGISLDVIRHY--AGRLPIL 76 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcC--CCEEEEcCCCCChHHCCccHHHHHHh--cCCCCEE
Confidence 899999999999999999988888877665432234444433 887776321 112222 2344433 3568888
No 289
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=32.62 E-value=1.6e+02 Score=34.78 Aligned_cols=93 Identities=15% Similarity=0.218 Sum_probs=52.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAs-ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPV 109 (665)
.++.++++|.|+...+.+++ .++.+...+ +-.+.++.+.-.+ .|++|+-+.-+ .+-..++..+|+ .++++|
T Consensus 422 ~g~~vvvID~d~~~v~~~~~----~g~~v~~GDat~~~~L~~agi~~--A~~vv~~~~d~-~~n~~i~~~~r~~~p~~~I 494 (601)
T PRK03659 422 NKMRITVLERDISAVNLMRK----YGYKVYYGDATQLELLRAAGAEK--AEAIVITCNEP-EDTMKIVELCQQHFPHLHI 494 (601)
T ss_pred CCCCEEEEECCHHHHHHHHh----CCCeEEEeeCCCHHHHHhcCCcc--CCEEEEEeCCH-HHHHHHHHHHHHHCCCCeE
Confidence 34567777777665444332 355443222 1234444433222 67666654332 233455666654 477888
Q ss_pred E-ecCchHHHHHHHHcCCCeEEe
Q 006006 110 I-TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 110 I-a~sd~e~a~kALe~GA~DYLl 131 (665)
| -..+.+...+..+.||+..+.
T Consensus 495 iaRa~~~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 495 LARARGRVEAHELLQAGVTQFSR 517 (601)
T ss_pred EEEeCCHHHHHHHHhCCCCEEEc
Confidence 8 456677777888999987764
No 290
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=32.47 E-value=1.3e+02 Score=32.18 Aligned_cols=81 Identities=17% Similarity=0.317 Sum_probs=56.8
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeC---C-----CCCCCHHHHHHHHhccCCccEE--e--cCchHHHHHHHHcCCCeEE
Q 006006 63 CSQAAVALDILRERKGCFDVVLSDV---H-----MPDMDGFKLLEHIGLEMDLPVI--T--DGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 63 AsngeEALelLre~k~~PDLVIlDI---~-----MP~mDGlELLe~Ir~~~~IPVI--a--~sd~e~a~kALe~GA~DYL 130 (665)
+++.++|.+.+++.. +|.+-+.+ + -|.. +++++++|++...+|++ + .-+.+.+.++++.|++..=
T Consensus 152 ~t~~eea~~f~~~tg--vD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 152 LADPDEAEQFVKETG--VDYLAAAIGTSHGKYKGEPGL-DFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKIN 228 (282)
T ss_pred cCCHHHHHHHHHHHC--cCEEeeccCccccccCCCCcc-CHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 558899999997555 88877542 1 1334 48999999877789988 3 4467788999999998875
Q ss_pred eCCCCHHHHHHHHHHHHHHh
Q 006006 131 IKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 131 lKPv~~eEL~~aLq~Vlrk~ 150 (665)
.= .+|+.++.+.++..
T Consensus 229 v~----T~l~~a~~~~~~~~ 244 (282)
T TIGR01859 229 ID----TDCRIAFTAAIRKV 244 (282)
T ss_pred EC----cHHHHHHHHHHHHH
Confidence 43 25556665555543
No 291
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=32.39 E-value=1.3e+02 Score=32.58 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=40.8
Q ss_pred HHHHHhcc-CCccEE--ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006006 97 LLEHIGLE-MDLPVI--TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146 (665)
Q Consensus 97 LLe~Ir~~-~~IPVI--a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~V 146 (665)
.+++.|.. ++.+.| -.+..+.+.+|+++|||-.++-.+++++++++++.+
T Consensus 177 Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm~~e~~~~av~~l 229 (280)
T COG0157 177 AVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 229 (280)
T ss_pred HHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHh
Confidence 45555543 566656 567888999999999999999999999999999875
No 292
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=32.39 E-value=1.6e+02 Score=28.98 Aligned_cols=87 Identities=14% Similarity=0.080 Sum_probs=55.5
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCCC-----CCHHHHHHHHh---ccCCccEE--ecCchH
Q 006006 49 LEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIG---LEMDLPVI--TDGRVS 116 (665)
Q Consensus 49 Lk~lL~~~gy~V~t--AsngeEALelLre~k~~PDLVIlDI~MP~-----mDGlELLe~Ir---~~~~IPVI--a~sd~e 116 (665)
+.+.++..|+.+.. +..+...++.+.... ||.|-+|..+.. .....+++.+. +...+++| .-.+.+
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~~ 214 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKRLP--VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGVETEE 214 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHhCC--CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEecCCHH
Confidence 33445556887764 456667777787766 999999965421 12344555542 34567887 456777
Q ss_pred HHHHHHHcCCC----eEEeCCCCHH
Q 006006 117 AVMRGIRHGAC----DYLIKPIREE 137 (665)
Q Consensus 117 ~a~kALe~GA~----DYLlKPv~~e 137 (665)
....+.+.|++ .|+.||...+
T Consensus 215 ~~~~~~~~gi~~~QG~~~~~p~~~~ 239 (240)
T cd01948 215 QLELLRELGCDYVQGYLFSRPLPAE 239 (240)
T ss_pred HHHHHHHcCCCeeeeceeccCCCCC
Confidence 77778888884 3566776543
No 293
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=32.25 E-value=61 Score=32.22 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=44.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEE-eCC-CCCCCH--HHHHHHHhccCCccEE
Q 006006 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS-DVH-MPDMDG--FKLLEHIGLEMDLPVI 110 (665)
Q Consensus 36 VLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIl-DI~-MP~mDG--lELLe~Ir~~~~IPVI 110 (665)
|||||....+-..+.++|...++.+....+....++.+.... ||.||+ -=- -|..++ .++++++ ...+||+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~--~d~iilsgGpg~p~~~~~~~~~i~~~--~~~~PvL 76 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALL--PLLIVISPGPCTPNEAGISLEAIRHF--AGKLPIL 76 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcC--CCEEEEcCCCCChhhcchhHHHHHHh--ccCCCEE
Confidence 899999999999999999988888876654322233344433 886665 211 111222 3445544 3468988
No 294
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=32.21 E-value=1.4e+02 Score=32.19 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=55.6
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCC-------CCCCHHHHHHHHhccCCccEE----ecCchHHHHHHHHcCCCeEEe
Q 006006 63 CSQAAVALDILRERKGCFDVVLSDVHM-------PDMDGFKLLEHIGLEMDLPVI----TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 63 AsngeEALelLre~k~~PDLVIlDI~M-------P~mDGlELLe~Ir~~~~IPVI----a~sd~e~a~kALe~GA~DYLl 131 (665)
.++.++|.+.+++.. +|.+=+.+-- |..| ++++++|++..++|++ .....+..++|++.|+.-.=.
T Consensus 152 ~T~pe~a~~Fv~~Tg--vD~LAvaiGt~HG~Y~~p~l~-~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 228 (283)
T PRK07998 152 KTEPEKVKDFVERTG--CDMLAVSIGNVHGLEDIPRID-IPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAKVNI 228 (283)
T ss_pred cCCHHHHHHHHHHhC--cCeeehhccccccCCCCCCcC-HHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcEEEE
Confidence 468889999998876 8977776622 4443 6889999877789988 233556788999999766533
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 006006 132 KPIREEELKNIWQHVVRK 149 (665)
Q Consensus 132 KPv~~eEL~~aLq~Vlrk 149 (665)
-.+|+.++.+.++.
T Consensus 229 ----~Tel~~a~~~~~~~ 242 (283)
T PRK07998 229 ----ASDLRKAFITTVGK 242 (283)
T ss_pred ----CHHHHHHHHHHHHH
Confidence 23555555555544
No 295
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=32.20 E-value=5.2e+02 Score=27.97 Aligned_cols=125 Identities=14% Similarity=0.151 Sum_probs=76.1
Q ss_pred eeeeccCCCCCCCccEEEEEeCCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHHcCCCceEEEEeCC--CCCC----
Q 006006 20 RAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRC-LYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDM---- 92 (665)
Q Consensus 20 f~~~~~~~d~fP~girVLIVDDD~~ire~Lk~lL~~~-gy~V~tAsngeEALelLre~k~~PDLVIlDI~--MP~m---- 92 (665)
+....+-.+...++-.|+-+.-+....-..++..... .+-...|+-....++.++... |++.|+|-+ +|++
T Consensus 63 v~~~~~dG~~v~~G~~i~~~~G~a~~ll~~eR~alN~l~~~SGIAT~T~~~V~~~~~~~--~~~~I~~TRKT~Pg~R~l~ 140 (284)
T PRK06096 63 IDDAVSDGSQANAGQRLISAQGNAAALHQGWKAVQNVLEWSCGVSDYLAQMLALLRERY--PDGNIACTRKAIPGTRLLA 140 (284)
T ss_pred EEEEeCCCCEeCCCCEEEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCcEEEecCcCCCchhHHH
Confidence 3444444566778888999988865544433333221 222234455556666665433 666666652 2332
Q ss_pred -----------------CHH-----------------HHHHHHhcc-CCccEE-ecCchHHHHHHHHcCCCeEEeCCCCH
Q 006006 93 -----------------DGF-----------------KLLEHIGLE-MDLPVI-TDGRVSAVMRGIRHGACDYLIKPIRE 136 (665)
Q Consensus 93 -----------------DGl-----------------ELLe~Ir~~-~~IPVI-a~sd~e~a~kALe~GA~DYLlKPv~~ 136 (665)
|++ +.++++|+. +..+|. --.+.+.+.+|+++||+-.++--+++
T Consensus 141 k~AV~~GGg~~HR~gLsd~vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~agaDiI~LDn~~~ 220 (284)
T PRK06096 141 TQAVLAAGGLIHRAGCAETILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRAQPDVLQLDKFSP 220 (284)
T ss_pred HHHHHcCCCcCccCCcchhhhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCH
Confidence 111 223333332 334444 45688999999999999999999999
Q ss_pred HHHHHHHHHH
Q 006006 137 EELKNIWQHV 146 (665)
Q Consensus 137 eEL~~aLq~V 146 (665)
+++++++..+
T Consensus 221 e~l~~av~~~ 230 (284)
T PRK06096 221 QQATEIAQIA 230 (284)
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 296
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=32.17 E-value=1.5e+02 Score=31.34 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=38.6
Q ss_pred HHHHHHHHhcc-CCccEE--ecCc-------hHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006006 94 GFKLLEHIGLE-MDLPVI--TDGR-------VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146 (665)
Q Consensus 94 GlELLe~Ir~~-~~IPVI--a~sd-------~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~V 146 (665)
.+++++.+++. ..+|++ ++.+ ..++.++.++|+++.+.-....++....+..+
T Consensus 74 ~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 74 CFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 46677777755 677866 4444 45678889999999999888888776655554
No 297
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.10 E-value=1.3e+02 Score=31.96 Aligned_cols=53 Identities=19% Similarity=0.294 Sum_probs=38.9
Q ss_pred HHHHHHHHh-ccCCccEE--ec-------CchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006006 94 GFKLLEHIG-LEMDLPVI--TD-------GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146 (665)
Q Consensus 94 GlELLe~Ir-~~~~IPVI--a~-------sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~V 146 (665)
.+++++++| ...++|+| +| .-.....++.+.|+++.|+-.+..+|....+..+
T Consensus 76 ~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 76 VFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 467777777 55678866 33 3334577889999999999878888887766665
No 298
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=32.03 E-value=2.8e+02 Score=31.39 Aligned_cols=81 Identities=17% Similarity=0.296 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC--CccEEec----CchHHHHHHHHcCCCeE-EeCCCCHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM--DLPVITD----GRVSAVMRGIRHGACDY-LIKPIREE 137 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~--~IPVIa~----sd~e~a~kALe~GA~DY-LlKPv~~e 137 (665)
+.+++++++++.-+.++++.+.==++..| ++-+++|++.. .+||++. .+.....++++.+++++ ++||-..-
T Consensus 263 s~~eai~~~~~lle~~~i~~iEdPl~~~D-~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iG 341 (425)
T TIGR01060 263 TSEEMIEYYKELVEKYPIVSIEDGLSEED-WEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIG 341 (425)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEcCCCccc-HHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecccccC
Confidence 44588888774222377877765454433 56666676554 7888832 24777888888887655 68887766
Q ss_pred HHHHHHHHH
Q 006006 138 ELKNIWQHV 146 (665)
Q Consensus 138 EL~~aLq~V 146 (665)
-|.++++.+
T Consensus 342 GItea~~ia 350 (425)
T TIGR01060 342 TLTETLDAV 350 (425)
T ss_pred CHHHHHHHH
Confidence 666555543
No 299
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=31.87 E-value=89 Score=31.83 Aligned_cols=53 Identities=30% Similarity=0.356 Sum_probs=39.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CEEE-EECCHHHHHHHHHHcCCCceEEEEeC
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCL--YNVT-TCSQAAVALDILRERKGCFDVVLSDV 87 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~g--y~V~-tAsngeEALelLre~k~~PDLVIlDI 87 (665)
-++++||-+......|++-++..+ -.+. ...++..++..+.... .+|+|++|=
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~-~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTRE-PFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCC-cccEEEeCC
Confidence 589999999999999999988775 2333 3455556666665432 399999994
No 300
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=31.83 E-value=49 Score=26.73 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=25.7
Q ss_pred HHHHHh-CCCCCCHHHHHhhhcccchhHHHHHHHHH
Q 006006 246 RILELM-NVPGLTRENVASHLQEINLQKFRLYLKRL 280 (665)
Q Consensus 246 kILeLL-~~~~LtI~EVAs~VGYsD~qYF~k~FKK~ 280 (665)
+|+++| ....+++.|||+.+|..... .++.+++.
T Consensus 14 ~Il~~L~~~~~~t~~ela~~l~~~~~t-~s~hL~~L 48 (61)
T PF12840_consen 14 RILRLLASNGPMTVSELAEELGISQST-VSYHLKKL 48 (61)
T ss_dssp HHHHHHHHCSTBEHHHHHHHHTS-HHH-HHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCHHH-HHHHHHHH
Confidence 477778 88999999999999976544 56666654
No 301
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=31.81 E-value=4e+02 Score=29.88 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=44.8
Q ss_pred ceEEEEeCCCCCCCHHH-HHHHHhccCCccEE----ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 80 FDVVLSDVHMPDMDGFK-LLEHIGLEMDLPVI----TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlE-LLe~Ir~~~~IPVI----a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
.|.+|++..-+..=-+| ++..+.. ....+| ...+...+..+++.|+++.+++|-++.++++....+-.
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~~-~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQG-SSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhcC-CCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 56777766555444444 3333422 233444 23455667788999999999999999999887766533
No 302
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.69 E-value=4e+02 Score=27.57 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCC-C-CCC-CHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 64 SQAAVALDILRERKGCFDVVLSDVH-M-PDM-DGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 64 sngeEALelLre~k~~PDLVIlDI~-M-P~m-DGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
.+..+..+.+.+.- -.|+++|+. + .+. .-+++++++.+...+|++ .-.+.+.+.+.++.||+..++
T Consensus 30 ~dp~~~a~~~~~~~--~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~viv 101 (228)
T PRK04128 30 GDPVEIALRFSEYV--DKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVII 101 (228)
T ss_pred CCHHHHHHHHHHhC--CEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEE
Confidence 36666666665531 358888886 2 221 458899999777788988 467888899999999998776
No 303
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=31.58 E-value=2.6e+02 Score=30.10 Aligned_cols=101 Identities=15% Similarity=0.200 Sum_probs=58.2
Q ss_pred EEEEE--eCCHHHHHH---HHHHHHhCCCEEEEECCHHHHHHH-------HHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006006 35 RVLVV--DDDITCLRI---LEQMLRRCLYNVTTCSQAAVALDI-------LRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (665)
Q Consensus 35 rVLIV--DDD~~ire~---Lk~lL~~~gy~V~tAsngeEALel-------Lre~k~~PDLVIlDI~MP~mDGlELLe~Ir 102 (665)
+|+|+ .+.+...+. +.+.|+..++.+.........+.. .+.....+|+||+ -+.|| .+++.++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDG-t~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV----LGGDG-TMLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE----ECCcH-HHHHHHH
Confidence 47777 333444444 444455557776554332211110 1111123788887 36677 3445554
Q ss_pred c--cCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 103 L--EMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 103 ~--~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
. ...+|+++- ..|=.+||. .++.+++.+.|.+++++..
T Consensus 82 ~~~~~~~pilGI----------n~G~lGFL~-~~~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 82 QLAPYGVPLIGI----------NHGRLGFIT-DIPLDDMQETLPPMLAGNY 121 (291)
T ss_pred HhcCCCCCEEEE----------cCCCccccc-cCCHHHHHHHHHHHHcCCc
Confidence 2 357888842 246668888 7889999999999887654
No 304
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.15 E-value=4.9e+02 Score=31.79 Aligned_cols=72 Identities=17% Similarity=0.294 Sum_probs=47.9
Q ss_pred CceEEEEe-CCCCCCCHHHHH-HHHhcc-CCccEE-ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 79 CFDVVLSD-VHMPDMDGFKLL-EHIGLE-MDLPVI-TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 79 ~PDLVIlD-I~MP~mDGlELL-e~Ir~~-~~IPVI-a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
.+.|+|+| ++|-...++..+ +.|.+- .++.+| +..+.......+..-+.-|-.||++.+++...+++++.+.
T Consensus 118 k~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHc
Confidence 37899998 555444455544 334332 345566 5555555555566667788899999999999999887653
No 305
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=31.03 E-value=5e+02 Score=32.26 Aligned_cols=71 Identities=18% Similarity=0.334 Sum_probs=49.7
Q ss_pred CceEEEEe-CCCCCCCHHHH-HHHHhcc-CCccEE-ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 79 CFDVVLSD-VHMPDMDGFKL-LEHIGLE-MDLPVI-TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 79 ~PDLVIlD-I~MP~mDGlEL-Le~Ir~~-~~IPVI-a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
.+.|+|+| ++|-...++.. ++.|.+- .++.+| ...+.+.+...|+.-+..|-.++++.++|...|.+++.+
T Consensus 120 ~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred CceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH
Confidence 47888988 55544556554 4444432 344455 555666677788888889999999999999988887654
No 306
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=30.98 E-value=6.1e+02 Score=27.36 Aligned_cols=122 Identities=7% Similarity=0.058 Sum_probs=73.0
Q ss_pred eccCCCCCCCccEEEEEeCCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHHcCCCceEEEEeCC--CCCC-------
Q 006006 23 DVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRC-LYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDM------- 92 (665)
Q Consensus 23 ~~~~~d~fP~girVLIVDDD~~ire~Lk~lL~~~-gy~V~tAsngeEALelLre~k~~PDLVIlDI~--MP~m------- 92 (665)
..+-.+.+.++-.|+-+.-+....-..++..... .+-...++.....++.++... |++.|+|.+ +|+.
T Consensus 65 ~~~dG~~v~~g~~i~~~~G~a~~ll~~eR~alN~l~~~SGIAT~T~~~V~~~~~~~--~~~~I~~TRKT~Pg~R~l~k~A 142 (277)
T TIGR01334 65 AVPSGSRALAGTLLLEAKGSAGQLHQGWKSAQSVLEWSCGVATYTHKMVTLAKKIS--PMAVVACTRKAIPLTRPLAVKA 142 (277)
T ss_pred EeCCCCEeCCCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEecCCCCCChhHHHHHH
Confidence 3344566778888999988865444333332221 222223444455555555433 555555542 2221
Q ss_pred ------------------------------CHH-HHHHHHhcc-CCccEE-ecCchHHHHHHHHcCCCeEEeCCCCHHHH
Q 006006 93 ------------------------------DGF-KLLEHIGLE-MDLPVI-TDGRVSAVMRGIRHGACDYLIKPIREEEL 139 (665)
Q Consensus 93 ------------------------------DGl-ELLe~Ir~~-~~IPVI-a~sd~e~a~kALe~GA~DYLlKPv~~eEL 139 (665)
+++ +.++.+|+. +..+|. --.+.+.+.+++++||+-.++--++++++
T Consensus 143 v~~GGg~~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~GaDiI~lDn~~~e~l 222 (277)
T TIGR01334 143 VLAAGGVIHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQASPDILQLDKFTPQQL 222 (277)
T ss_pred HHhCCCcCeecCCchhheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCcCEEEECCCCHHHH
Confidence 111 233344432 334444 45688899999999999999999999999
Q ss_pred HHHHHHH
Q 006006 140 KNIWQHV 146 (665)
Q Consensus 140 ~~aLq~V 146 (665)
+++++.+
T Consensus 223 ~~~v~~l 229 (277)
T TIGR01334 223 HHLHERL 229 (277)
T ss_pred HHHHHHH
Confidence 9999865
No 307
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=30.92 E-value=5.4e+02 Score=26.26 Aligned_cols=73 Identities=22% Similarity=0.285 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHH
Q 006006 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 145 (665)
Q Consensus 66 geEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~ 145 (665)
..+..+.+.. .|++++=....+.-|+.++|.+. ..+|||+.+. ....+.+..|..+|+..+ .++|.+++.+
T Consensus 234 ~~~~~~~~~~----~d~~v~ps~~~E~~~~~~lEAma--~G~PvI~~~~-~~~~e~i~~~~~g~l~~~--~~~l~~~l~~ 304 (335)
T cd03802 234 GAEKAELLGN----ARALLFPILWEEPFGLVMIEAMA--CGTPVIAFRR-GAVPEVVEDGVTGFLVDS--VEELAAAVAR 304 (335)
T ss_pred HHHHHHHHHh----CcEEEeCCcccCCcchHHHHHHh--cCCCEEEeCC-CCchhheeCCCcEEEeCC--HHHHHHHHHH
Confidence 3444555542 58777755444556778888774 4578985432 233456677888999987 8888888877
Q ss_pred HH
Q 006006 146 VV 147 (665)
Q Consensus 146 Vl 147 (665)
+.
T Consensus 305 l~ 306 (335)
T cd03802 305 AD 306 (335)
T ss_pred Hh
Confidence 63
No 308
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.89 E-value=1.7e+02 Score=31.36 Aligned_cols=100 Identities=20% Similarity=0.238 Sum_probs=55.2
Q ss_pred cEEEEEe--CCHH---HHHHHHHHHHhCCCEEEEECCHHHHHH--------HHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 006006 34 LRVLVVD--DDIT---CLRILEQMLRRCLYNVTTCSQAAVALD--------ILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (665)
Q Consensus 34 irVLIVD--DD~~---ire~Lk~lL~~~gy~V~tAsngeEALe--------lLre~k~~PDLVIlDI~MP~mDGlELLe~ 100 (665)
|||.||- +.+. ..+.+.++|+..++++.......+.+. .+.+. .+|+||+ -+.||. +++.
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~--~~d~vi~----iGGDGT-lL~a 73 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEM--DVDFIIA----IGGDGT-ILRI 73 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccc--CCCEEEE----EeCcHH-HHHH
Confidence 5778872 2233 344455555566777765432221111 11111 3777776 366773 3344
Q ss_pred Hh-ccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 101 IG-LEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 101 Ir-~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
++ ....+||+.- ..|-.+||. .++++++...+.++.++..
T Consensus 74 ~~~~~~~~pi~gI----------n~G~lGFl~-~~~~~~~~~~l~~i~~g~~ 114 (277)
T PRK03708 74 EHKTKKDIPILGI----------NMGTLGFLT-EVEPEETFFALSRLLEGDY 114 (277)
T ss_pred HHhcCCCCeEEEE----------eCCCCCccc-cCCHHHHHHHHHHHHcCCc
Confidence 43 2246787721 124456766 6778999999999887653
No 309
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=30.89 E-value=1.9e+02 Score=32.14 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=43.9
Q ss_pred ceEEEEeCCCCCCCHHH-HHHHHhccCCccEE----ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006006 80 FDVVLSDVHMPDMDGFK-LLEHIGLEMDLPVI----TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlE-LLe~Ir~~~~IPVI----a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vl 147 (665)
.|.+|++-.-+..=-+| ++..+. ....++ ...+...+...++.|+++.+++|-++.++++....+-
T Consensus 89 ~~~viv~~~dW~iIPlEnlIA~~~--~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~~ 159 (344)
T PRK02290 89 VDYVIVEGRDWTIIPLENLIADLG--QSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALIE 159 (344)
T ss_pred CCEEEEECCCCcEecHHHHHhhhc--CCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHHh
Confidence 47777776544443444 334442 233344 2345556778899999999999999999988776653
No 310
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=30.71 E-value=1.7e+02 Score=32.59 Aligned_cols=54 Identities=11% Similarity=-0.060 Sum_probs=40.9
Q ss_pred CceEEEEeCCCCC-CCHHHHHHHHhcc-CCccEE-e-cCchHHHHHHHHcCCCeEEeC
Q 006006 79 CFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVI-T-DGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 79 ~PDLVIlDI~MP~-mDGlELLe~Ir~~-~~IPVI-a-~sd~e~a~kALe~GA~DYLlK 132 (665)
.+|+|++|+-=.. ..-++.+++||+. +..+|| . -.+.+.+.+++++||+....=
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 4899999985443 2346778888754 667777 3 678888999999999987644
No 311
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=30.53 E-value=1.6e+02 Score=31.91 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eEL~ 140 (665)
+.++|++.++... ..++..++--++. +-++.++.|++...+||++ ..+...+.++++.|+.|++ .||....=|.
T Consensus 201 ~~~~a~~~~~~l~-~~~i~~iEqP~~~-~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 278 (357)
T cd03316 201 DLAEAIRLARALE-EYDLFWFEEPVPP-DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGIT 278 (357)
T ss_pred CHHHHHHHHHHhC-ccCCCeEcCCCCc-cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHH
Confidence 5567777776543 2455555544443 2356666777667788882 3456778888888888776 6665544343
Q ss_pred H
Q 006006 141 N 141 (665)
Q Consensus 141 ~ 141 (665)
.
T Consensus 279 ~ 279 (357)
T cd03316 279 E 279 (357)
T ss_pred H
Confidence 3
No 312
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=30.48 E-value=1.9e+02 Score=30.97 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCCceEEEEeCCCCCC---CHHHHHHHHhccCCccEEe--cCchHHHHHHHHcCCCeEEe
Q 006006 68 VALDILRERKGCFDVVLSDVHMPDM---DGFKLLEHIGLEMDLPVIT--DGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 68 EALelLre~k~~PDLVIlDI~MP~m---DGlELLe~Ir~~~~IPVIa--~sd~e~a~kALe~GA~DYLl 131 (665)
++++.+++.. +|.|.+.+..|.. .-++.++.+++...+||+. ....+.+.++.++||+...+
T Consensus 133 ~~i~~~~~~g--~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v 199 (299)
T cd02809 133 DLLRRAEAAG--YKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVV 199 (299)
T ss_pred HHHHHHHHcC--CCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEE
Confidence 3444444443 8988888877742 1257788888766788883 36678889999999998876
No 313
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=30.40 E-value=2.8e+02 Score=29.64 Aligned_cols=112 Identities=23% Similarity=0.237 Sum_probs=67.9
Q ss_pred CccEEEEEeCCHH-------HHHHHHHHHHhCCCEEEEECC--HHHHHHHHHHcCCCceEEEEeCCCCCCCHH-----HH
Q 006006 32 AGLRVLVVDDDIT-------CLRILEQMLRRCLYNVTTCSQ--AAVALDILRERKGCFDVVLSDVHMPDMDGF-----KL 97 (665)
Q Consensus 32 ~girVLIVDDD~~-------ire~Lk~lL~~~gy~V~tAsn--geEALelLre~k~~PDLVIlDI~MP~mDGl-----EL 97 (665)
..+|+=|+-|+.. ..+..+ .|-++||.|.-..+ .--|-+ +++-. =..++-+--|-.+|+ ..
T Consensus 99 ~wiKlEVi~d~~tLlPD~~etl~Aae-~Lv~eGF~VlPY~~dD~v~arr-Lee~G---caavMPl~aPIGSg~G~~n~~~ 173 (262)
T COG2022 99 NWIKLEVIGDEKTLLPDPIETLKAAE-QLVKEGFVVLPYTTDDPVLARR-LEEAG---CAAVMPLGAPIGSGLGLQNPYN 173 (262)
T ss_pred CeEEEEEecCCcccCCChHHHHHHHH-HHHhCCCEEeeccCCCHHHHHH-HHhcC---ceEeccccccccCCcCcCCHHH
Confidence 3466666666532 233333 34445899875433 333333 33322 234555555544443 45
Q ss_pred HHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEeC-----CCCHHHHHHHHHHHHH
Q 006006 98 LEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVR 148 (665)
Q Consensus 98 Le~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlK-----Pv~~eEL~~aLq~Vlr 148 (665)
++.|.++.++||| +-...+.+..|++.|++..|+- --++-.+.+++.+++.
T Consensus 174 l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 174 LEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE 232 (262)
T ss_pred HHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHH
Confidence 6677777899999 5678888999999999999874 2455666666666654
No 314
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=30.33 E-value=1.1e+02 Score=35.25 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCC-CCCCHHHHHHHHhcc-CCccEE--ecCchHHHHHHHHcCCCeEE
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHM-PDMDGFKLLEHIGLE-MDLPVI--TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~M-P~mDGlELLe~Ir~~-~~IPVI--a~sd~e~a~kALe~GA~DYL 130 (665)
+..+.++.+.+.. .|+|++|..- ....-++++++||+. ++++|| .-...+.+..++++||+..-
T Consensus 227 ~~~~~a~~Lv~aG--vd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 227 DVAAKARALLEAG--VDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred hHHHHHHHHHHhC--CCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEE
Confidence 3334444444443 8999999743 456677888888754 688988 35678888999999998754
No 315
>PLN02476 O-methyltransferase
Probab=30.30 E-value=1.9e+02 Score=31.17 Aligned_cols=84 Identities=19% Similarity=0.227 Sum_probs=54.0
Q ss_pred hHHHHHHhcCCC-----CCccee-eeeccCCCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHH
Q 006006 3 ALQRIVQSSGGS-----GYGSSR-AADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDIL 73 (665)
Q Consensus 3 i~~~~V~~mgGs-----g~Gs~f-~~~~~~~d~fP~girVLIVDDD~~ire~Lk~lL~~~gy~--V~-tAsngeEALelL 73 (665)
..+.++.+.++. |.+..+ ++-++ ...|..-+|.-+|-++...+..++.++..++. |. ...++.+.|..+
T Consensus 109 lL~~L~~~~~ak~VLEIGT~tGySal~lA--~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l 186 (278)
T PLN02476 109 LLAMLVQILGAERCIEVGVYTGYSSLAVA--LVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSM 186 (278)
T ss_pred HHHHHHHhcCCCeEEEecCCCCHHHHHHH--HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence 345666666662 333333 22221 22344457999999999999999999988763 43 456777777655
Q ss_pred HHc--CCCceEEEEeCC
Q 006006 74 RER--KGCFDVVLSDVH 88 (665)
Q Consensus 74 re~--k~~PDLVIlDI~ 88 (665)
... ...+|+|++|..
T Consensus 187 ~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 187 IQNGEGSSYDFAFVDAD 203 (278)
T ss_pred HhcccCCCCCEEEECCC
Confidence 321 135999999985
No 316
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=29.88 E-value=6.7e+02 Score=26.55 Aligned_cols=108 Identities=17% Similarity=0.203 Sum_probs=60.3
Q ss_pred ccEEEEEeCCH-------HHHHHHHHHHHh-CCC--EEEEE--CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 006006 33 GLRVLVVDDDI-------TCLRILEQMLRR-CLY--NVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (665)
Q Consensus 33 girVLIVDDD~-------~ire~Lk~lL~~-~gy--~V~tA--sngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~ 100 (665)
.++++|+.+.+ ...+.++++++. .+. .|... -..++..+.+.. .|++++-... +.-|+.+++.
T Consensus 245 ~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~----ad~~l~~s~~-E~~g~~~lEA 319 (392)
T cd03805 245 NVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSS----ARALLYTPSN-EHFGIVPLEA 319 (392)
T ss_pred CeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhh----CeEEEECCCc-CCCCchHHHH
Confidence 46777776532 223445555554 322 33322 223333444432 5777764332 2235556666
Q ss_pred HhccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 101 IGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 101 Ir~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
+. ..+|||+.+. ....+.+..|..+|+..+ +.+++.+.+.+++..
T Consensus 320 ma--~G~PvI~s~~-~~~~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~ 364 (392)
T cd03805 320 MY--AGKPVIACNS-GGPLETVVDGETGFLCEP-TPEEFAEAMLKLAND 364 (392)
T ss_pred HH--cCCCEEEECC-CCcHHHhccCCceEEeCC-CHHHHHHHHHHHHhC
Confidence 53 4688884332 223455666778899876 999999888887653
No 317
>PRK13566 anthranilate synthase; Provisional
Probab=29.70 E-value=70 Score=38.81 Aligned_cols=77 Identities=23% Similarity=0.289 Sum_probs=49.6
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEe-C-CCCC-CCHHHHHHHHhccCC
Q 006006 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD-V-HMPD-MDGFKLLEHIGLEMD 106 (665)
Q Consensus 30 fP~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlD-I-~MP~-mDGlELLe~Ir~~~~ 106 (665)
.-.+++|||||.+......|.++|+..++.|..+..... .+.+.... ||.||+- = ..|. .+-.++++++. ...
T Consensus 523 ~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~~~--~DgVVLsgGpgsp~d~~~~~lI~~a~-~~~ 598 (720)
T PRK13566 523 VGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDRVN--PDLVVLSPGPGRPSDFDCKATIDAAL-ARN 598 (720)
T ss_pred CCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhhcC--CCEEEECCCCCChhhCCcHHHHHHHH-HCC
Confidence 336789999999988899999999999998877665432 22333333 8987762 1 1121 12344555442 246
Q ss_pred ccEE
Q 006006 107 LPVI 110 (665)
Q Consensus 107 IPVI 110 (665)
+||+
T Consensus 599 iPIL 602 (720)
T PRK13566 599 LPIF 602 (720)
T ss_pred CcEE
Confidence 8988
No 318
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=29.69 E-value=6.3e+02 Score=25.90 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=63.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEEC--CHHHHHHHHHHcCCCceEEEEeCCC-CCCCHHHHHHHHhccCCc
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCS--QAAVALDILRERKGCFDVVLSDVHM-PDMDGFKLLEHIGLEMDL 107 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~g--y~V~tAs--ngeEALelLre~k~~PDLVIlDI~M-P~mDGlELLe~Ir~~~~I 107 (665)
.++++|+.+.+. ...+.++++..+ -.|.... +.++..+.+.. -|++++-... .+.-|+.+++.+. ..+
T Consensus 218 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~----ad~~i~ps~~~~e~~g~~~~Ea~~--~g~ 290 (357)
T cd03795 218 DAPLVIVGEGPL-EAELEALAAALGLLDRVRFLGRLDDEEKAALLAA----CDVFVFPSVERSEAFGIVLLEAMA--FGK 290 (357)
T ss_pred CcEEEEEeCChh-HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHh----CCEEEeCCcccccccchHHHHHHH--cCC
Confidence 467777776543 334555554332 2343332 33444555542 4777653221 2334677777774 468
Q ss_pred cEEecCchHHHHHHHH-cCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 108 PVITDGRVSAVMRGIR-HGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 108 PVIa~sd~e~a~kALe-~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
|||+.+... ..+.+. .|..+++..+-+.+++.+++.+++..
T Consensus 291 Pvi~~~~~~-~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 291 PVISTEIGT-GGSYVNLHGVTGLVVPPGDPAALAEAIRRLLED 332 (357)
T ss_pred CEEecCCCC-chhHHhhCCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 888433221 222333 48889999999999999999998754
No 319
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=29.68 E-value=66 Score=31.90 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=27.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCS 64 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAs 64 (665)
.+||||||.....-..+.++|++.++.+.++.
T Consensus 1 ~~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 1 ATKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred CcEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 37999999998888889999999888776655
No 320
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=29.68 E-value=3.7e+02 Score=27.63 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=58.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~g--y~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI 110 (665)
.++++|+.+.+.. +.+++++...+ ..|.......+..+.+.. .|++++--.. +.-|..+++.+. ..+|+|
T Consensus 219 ~~~l~i~G~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~-e~~~~~~~Ea~a--~G~PvI 290 (360)
T cd04951 219 DIKLLIAGDGPLR-ATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAW-EGFGLVVAEAMA--CELPVV 290 (360)
T ss_pred CeEEEEEcCCCcH-HHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccc-cCCChHHHHHHH--cCCCEE
Confidence 4677777665432 34445554432 234444433444444432 4776664332 223666777764 457888
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
+.+. ....+.++. .+++..+-+.+++.+++..++.
T Consensus 291 ~~~~-~~~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 291 ATDA-GGVREVVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred EecC-CChhhEecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 4322 122222322 5778889999999999988863
No 321
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=29.67 E-value=1.2e+02 Score=29.38 Aligned_cols=52 Identities=23% Similarity=0.165 Sum_probs=35.2
Q ss_pred CCccEEEEEeCCHHH---------HHHHHHHHHhC-CCEEEEECCHHHHHHHHHHcCCCceEEEE
Q 006006 31 PAGLRVLVVDDDITC---------LRILEQMLRRC-LYNVTTCSQAAVALDILRERKGCFDVVLS 85 (665)
Q Consensus 31 P~girVLIVDDD~~i---------re~Lk~lL~~~-gy~V~tAsngeEALelLre~k~~PDLVIl 85 (665)
...++|.|||.|... -+.+.+.|+.. .+.+.. .+.++|.+.++..+ .+.+|.
T Consensus 41 ~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~~g~--~~~~iv 102 (164)
T TIGR03061 41 LDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLADGK--YYMVIT 102 (164)
T ss_pred cCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhHcCc--EEEEEE
Confidence 467899999999654 34444445443 445443 48899999998776 776654
No 322
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=29.66 E-value=1.9e+02 Score=28.35 Aligned_cols=53 Identities=15% Similarity=0.141 Sum_probs=33.8
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHhcc-----CCccEE--ecCchHHHHHHHHcCCCeEEeC
Q 006006 80 FDVVLSDVHMPDMDG-------FKLLEHIGLE-----MDLPVI--TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 80 PDLVIlDI~MP~mDG-------lELLe~Ir~~-----~~IPVI--a~sd~e~a~kALe~GA~DYLlK 132 (665)
+|.|+++-..|+.+| ++.++++++. .++|++ .--..+.+.++++.||+.++.-
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~gad~iivg 194 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAG 194 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 688888765555433 3445555432 247775 3334578888999999988764
No 323
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=29.58 E-value=2.3e+02 Score=28.63 Aligned_cols=65 Identities=12% Similarity=0.231 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 65 ngeEALelLre~k~~PD-LVIlDI~MP~m---DGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
+..+.++.+.+.. .| ++++|+..-++ --+++++++++...+|+| .-.+.+.+.++++.||++.+.
T Consensus 147 ~~~~~~~~~~~~g--a~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEELG--VKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHHcC--CCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 3445556565543 44 66777744322 226888888877789998 345667788888999999765
No 324
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=29.35 E-value=4.6e+02 Score=26.31 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=42.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe--CCCCHHHHHHHHHHH
Q 006006 82 VVLSDVHMPDMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI--KPIREEELKNIWQHV 146 (665)
Q Consensus 82 LVIlDI~MP~mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl--KPv~~eEL~~aLq~V 146 (665)
|-++|...--...++.++.+++...+||+ ...+...+..+++.||+..++ .-+..+++.+.++..
T Consensus 48 l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 48 ISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 33444444444566788888777789988 224555788899999999973 224445565555544
No 325
>PRK15185 transcriptional regulator HilD; Provisional
Probab=29.20 E-value=58 Score=35.60 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=27.7
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
...+++++|+++|.+ ..+|.+.||+ +|+||..
T Consensus 221 ~~~SledLA~~lgmS-~~tL~R~FK~-~G~S~~~ 252 (309)
T PRK15185 221 RQWKLTDVADHIFMS-TSTLKRKLAE-EGTSFSD 252 (309)
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHH-cCCCHHH
Confidence 567999999999876 5789999997 7999974
No 326
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=29.13 E-value=5.9e+02 Score=31.72 Aligned_cols=71 Identities=14% Similarity=0.241 Sum_probs=50.0
Q ss_pred CceEEEEe-CCCCCCCHHH-HHHHHhcc-CCccEE-ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 79 CFDVVLSD-VHMPDMDGFK-LLEHIGLE-MDLPVI-TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 79 ~PDLVIlD-I~MP~mDGlE-LLe~Ir~~-~~IPVI-a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
.+.|+|+| ++|-....+. |++.|.+- .++.+| ...+...+...+..-+.-|-.|++..+++...+++++..
T Consensus 119 r~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~ 193 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGE 193 (830)
T ss_pred CceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHH
Confidence 36888888 4444334444 45555432 356666 666677777778888888999999999999999888764
No 327
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.11 E-value=3.7e+02 Score=29.28 Aligned_cols=102 Identities=25% Similarity=0.315 Sum_probs=57.8
Q ss_pred cEEEEEe--CCHHHH---HHHHHHHHhCCCEEEEECCHHHHHHH----------------HHHcCCCceEEEEeCCCCCC
Q 006006 34 LRVLVVD--DDITCL---RILEQMLRRCLYNVTTCSQAAVALDI----------------LRERKGCFDVVLSDVHMPDM 92 (665)
Q Consensus 34 irVLIVD--DD~~ir---e~Lk~lL~~~gy~V~tAsngeEALel----------------Lre~k~~PDLVIlDI~MP~m 92 (665)
.+|+|+- +.+... +.|..+|...++.+.........+.. .......+|+||+ -+.
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGG 81 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV----LGG 81 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE----EcC
Confidence 3577773 334434 44455555557777654433222110 0111112677776 367
Q ss_pred CHHHHHHHHhc--cCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 93 DGFKLLEHIGL--EMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 93 DGlELLe~Ir~--~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
|| .+++..+. ...+||++- ..|-.+||.- +..+++.+++++++++..
T Consensus 82 DG-T~L~aar~~~~~~~PilGI----------N~G~lGFL~~-~~~~~~~~~l~~i~~g~y 130 (306)
T PRK03372 82 DG-TILRAAELARAADVPVLGV----------NLGHVGFLAE-AEAEDLDEAVERVVDRDY 130 (306)
T ss_pred CH-HHHHHHHHhccCCCcEEEE----------ecCCCceecc-CCHHHHHHHHHHHHcCCc
Confidence 88 34444432 346888832 2367789884 788999999999987754
No 328
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=29.08 E-value=45 Score=25.88 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=22.4
Q ss_pred HHhCCCCCCHHHHHhhhcccchhHHHHHHHH
Q 006006 249 ELMNVPGLTRENVASHLQEINLQKFRLYLKR 279 (665)
Q Consensus 249 eLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK 279 (665)
+++..-|++..++|..+| .+.++.+++.+.
T Consensus 3 ~~r~~~gls~~~la~~~g-is~~~i~~~~~g 32 (55)
T PF01381_consen 3 ELRKEKGLSQKELAEKLG-ISRSTISRIENG 32 (55)
T ss_dssp HHHHHTTS-HHHHHHHHT-S-HHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHhC-CCcchhHHHhcC
Confidence 445568999999999999 677777777765
No 329
>PRK08185 hypothetical protein; Provisional
Probab=29.04 E-value=1.6e+02 Score=31.75 Aligned_cols=81 Identities=17% Similarity=0.365 Sum_probs=54.9
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeC---------C-CCCCCHHHHHHHHhccCCccEE----ecCchHHHHHHHHcCCCe
Q 006006 63 CSQAAVALDILRERKGCFDVVLSDV---------H-MPDMDGFKLLEHIGLEMDLPVI----TDGRVSAVMRGIRHGACD 128 (665)
Q Consensus 63 AsngeEALelLre~k~~PDLVIlDI---------~-MP~mDGlELLe~Ir~~~~IPVI----a~sd~e~a~kALe~GA~D 128 (665)
.++.++|.+.+++.. +|.+-+-+ . -|..+ +++++.|++..++|++ .....+..++|++.|+.-
T Consensus 148 ~t~peea~~f~~~Tg--vD~LAvaiGt~HG~y~~~~kp~L~-~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~K 224 (283)
T PRK08185 148 YTDPEQAEDFVSRTG--VDTLAVAIGTAHGIYPKDKKPELQ-MDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGK 224 (283)
T ss_pred CCCHHHHHHHHHhhC--CCEEEeccCcccCCcCCCCCCCcC-HHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeE
Confidence 458889999998765 89888733 0 25566 8999999877789988 223566788999999654
Q ss_pred EEeCCCCHHHHHHHHHHHHHHh
Q 006006 129 YLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 129 YLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
. .+ -.+|+.++.+.++..
T Consensus 225 i---Ni-~T~l~~a~~~~~~~~ 242 (283)
T PRK08185 225 I---NI-SSDMKYAFFKKVREI 242 (283)
T ss_pred E---Ee-ChHHHHHHHHHHHHH
Confidence 3 12 235555555555543
No 330
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=28.95 E-value=2.2e+02 Score=27.90 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=51.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCEEEEEC-------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCS-------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~--gy~V~tAs-------ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir 102 (665)
.+.+|.++-..+...+.+...|... +..+.-+. ..++.++.+.+.. ||+|++-+-+|... .++.+.+
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~--pdiv~vglG~PkQE--~~~~~~~ 122 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASG--PDIVFVGLGAPKQE--RWIARHR 122 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcC--CCEEEEECCCCHHH--HHHHHHH
Confidence 4689999999999999888888875 44444332 2345666666665 99999999998755 3455555
Q ss_pred ccCCccEE
Q 006006 103 LEMDLPVI 110 (665)
Q Consensus 103 ~~~~IPVI 110 (665)
..-..+++
T Consensus 123 ~~l~~~v~ 130 (172)
T PF03808_consen 123 QRLPAGVI 130 (172)
T ss_pred HHCCCCEE
Confidence 44444443
No 331
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.92 E-value=1.5e+02 Score=32.23 Aligned_cols=88 Identities=14% Similarity=-0.015 Sum_probs=0.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhC------CCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccE
Q 006006 36 VLVVDDDITCLRILEQMLRRC------LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (665)
Q Consensus 36 VLIVDDD~~ire~Lk~lL~~~------gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPV 109 (665)
|||=|.|-...-.+...++.. ......+.+.+++.+.++.. +|+|++| +|+-.+--+.++.++....+-+
T Consensus 179 vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~aG---aDiImLD-nmspe~l~~av~~~~~~~~lEa 254 (294)
T PRK06978 179 ILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAHG---AQSVLLD-NFTLDMMREAVRVTAGRAVLEV 254 (294)
T ss_pred EEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHcC---CCEEEEC-CCCHHHHHHHHHhhcCCeEEEE
Q ss_pred EecCchHHHHHHHHcCCC
Q 006006 110 ITDGRVSAVMRGIRHGAC 127 (665)
Q Consensus 110 Ia~sd~e~a~kALe~GA~ 127 (665)
-+.-+.+.+.+-.+.|+|
T Consensus 255 SGGIt~~ni~~yA~tGVD 272 (294)
T PRK06978 255 SGGVNFDTVRAFAETGVD 272 (294)
T ss_pred ECCCCHHHHHHHHhcCCC
No 332
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=28.87 E-value=1.3e+02 Score=32.76 Aligned_cols=92 Identities=10% Similarity=0.060 Sum_probs=0.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhC------CCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccE
Q 006006 36 VLVVDDDITCLRILEQMLRRC------LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (665)
Q Consensus 36 VLIVDDD~~ire~Lk~lL~~~------gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPV 109 (665)
|||=|.|-...-.+.+.+++. ......+.+.+||.+.++.. +|+|.+| +|.-.+--++++.++....+-+
T Consensus 182 iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~g---aDiI~LD-n~s~e~~~~av~~~~~~~~iea 257 (296)
T PRK09016 182 FLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKAG---ADIIMLD-NFTTEQMREAVKRTNGRALLEV 257 (296)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcC---CCEEEeC-CCChHHHHHHHHhhcCCeEEEE
Q ss_pred EecCchHHHHHHHHcCCCeEEe
Q 006006 110 ITDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 110 Ia~sd~e~a~kALe~GA~DYLl 131 (665)
-+.-+.+.+.+-.+.|+|-.-+
T Consensus 258 SGGI~~~ni~~yA~tGVD~Is~ 279 (296)
T PRK09016 258 SGNVTLETLREFAETGVDFISV 279 (296)
T ss_pred ECCCCHHHHHHHHhcCCCEEEe
No 333
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=28.83 E-value=1.4e+02 Score=32.37 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=42.3
Q ss_pred EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE--ecCchHHHHHHHHcCCCeEE
Q 006006 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI--TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 59 ~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI--a~sd~e~a~kALe~GA~DYL 130 (665)
....+.+.++|.+.++.. +|+|++| +|+..+--++.+.++. .+.+.+- +.-+.+.+.+-...|++-+.
T Consensus 192 IeVEv~tleqa~ea~~ag---aDiI~LD-n~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 192 IVVEADTPKEAIAALRAQ---PDVLQLD-KFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLFI 262 (284)
T ss_pred EEEECCCHHHHHHHHHcC---CCEEEEC-CCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 345788999999998743 8999999 4544333344444432 2333333 34466777777777876543
No 334
>PRK00077 eno enolase; Provisional
Probab=28.60 E-value=4e+02 Score=30.20 Aligned_cols=106 Identities=15% Similarity=0.270 Sum_probs=63.1
Q ss_pred eCCHHHHHHHHHHHHhCCCE----EEEEC--------------------CHHHHHHHHHHcCCCceEEEEeCCCCCCCHH
Q 006006 40 DDDITCLRILEQMLRRCLYN----VTTCS--------------------QAAVALDILRERKGCFDVVLSDVHMPDMDGF 95 (665)
Q Consensus 40 DDD~~ire~Lk~lL~~~gy~----V~tAs--------------------ngeEALelLre~k~~PDLVIlDI~MP~mDGl 95 (665)
+++....+.+++.++..+|. +..+- +.+++.+.+.+.-+.++|+.+.==++..| +
T Consensus 213 ~~~~e~l~~lreAi~~ag~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i~~iEdPl~~~D-~ 291 (425)
T PRK00077 213 KSNEEALDLILEAIEKAGYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPIVSIEDGLDEND-W 291 (425)
T ss_pred cchHHHHHHHHHHHHHhcCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCcEEEEcCCCCcc-H
Confidence 45566667777777665443 22111 33466665554433377877765554443 4
Q ss_pred HHHHHHhccC--CccEEec----CchHHHHHHHHcCCCeE-EeCCCCHHHHHHHHHHH
Q 006006 96 KLLEHIGLEM--DLPVITD----GRVSAVMRGIRHGACDY-LIKPIREEELKNIWQHV 146 (665)
Q Consensus 96 ELLe~Ir~~~--~IPVIa~----sd~e~a~kALe~GA~DY-LlKPv~~eEL~~aLq~V 146 (665)
+-.++|++.. .+||+.. .+.....++++.+++++ ++|+-...-|.++++.+
T Consensus 292 ~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia 349 (425)
T PRK00077 292 EGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAI 349 (425)
T ss_pred HHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHH
Confidence 5555665443 5888832 34677888888886555 68887766666555543
No 335
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.54 E-value=1.8e+02 Score=30.92 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=40.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhc--c--CCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 80 FDVVLSDVHMPDMDGFKLLEHIGL--E--MDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlELLe~Ir~--~--~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
+|+||+ -+.|| .+++.++. . ..+|+++- ..|-.+||. .++++++.+.+++++++..
T Consensus 36 ~Dlvi~----iGGDG-T~L~a~~~~~~~~~~iPilGI----------N~G~lGFL~-~~~~~~~~~~l~~i~~g~y 95 (265)
T PRK04885 36 PDIVIS----VGGDG-TLLSAFHRYENQLDKVRFVGV----------HTGHLGFYT-DWRPFEVDKLVIALAKDPG 95 (265)
T ss_pred CCEEEE----ECCcH-HHHHHHHHhcccCCCCeEEEE----------eCCCceecc-cCCHHHHHHHHHHHHcCCc
Confidence 798887 36787 35555542 1 47888842 247788999 6889999999999887653
No 336
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=28.50 E-value=2.3e+02 Score=29.70 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCC-CCH--HHHHHHHhccCCccEE---ecCchHHHHHHH-HcCCCeEEe
Q 006006 66 AAVALDILRERKGCFDVVLSDVHMPD-MDG--FKLLEHIGLEMDLPVI---TDGRVSAVMRGI-RHGACDYLI 131 (665)
Q Consensus 66 geEALelLre~k~~PDLVIlDI~MP~-mDG--lELLe~Ir~~~~IPVI---a~sd~e~a~kAL-e~GA~DYLl 131 (665)
..+.++.+.+.. --.++++|+.--+ +.| +++++++++...+||| .-.+.+.+.+++ +.|+++.+.
T Consensus 154 ~~e~~~~~~~~g-~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 154 PLELAKEYEALG-AGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred HHHHHHHHHHcC-CCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 446666665543 1258888885433 223 6778888877889999 356777788888 789887654
No 337
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=28.49 E-value=1.3e+02 Score=33.70 Aligned_cols=123 Identities=24% Similarity=0.264 Sum_probs=70.3
Q ss_pred hHHHHHHhcCC-------CCCcceeeeeccCCCCCCCccEEEEEeCC-HHHHHHHHHHHHhCCCEEEEECCH-HHHHHHH
Q 006006 3 ALQRIVQSSGG-------SGYGSSRAADVAVPDQFPAGLRVLVVDDD-ITCLRILEQMLRRCLYNVTTCSQA-AVALDIL 73 (665)
Q Consensus 3 i~~~~V~~mgG-------sg~Gs~f~~~~~~~d~fP~girVLIVDDD-~~ire~Lk~lL~~~gy~V~tAsng-eEALelL 73 (665)
+-++|.++-|| ||++.++..-+.+ ...+-+|++.++- .-.+..++.++...+..+..+... .++++..
T Consensus 60 le~~la~Le~g~~a~~~~SGmaAi~~~l~~l---l~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~ 136 (386)
T PF01053_consen 60 LEQRLAALEGGEDALLFSSGMAAISAALLAL---LKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAA 136 (386)
T ss_dssp HHHHHHHHHT-SEEEEESSHHHHHHHHHHHH---S-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHH
T ss_pred HHHHHHHhhcccceeeccchHHHHHHHHHhh---cccCCceEecCCccCcchhhhhhhhcccCcEEEEeCchhHHHHHhh
Confidence 34677788887 5777766555444 3446678888774 667778888888889998877542 3444433
Q ss_pred HHcCCCceEEEEeC-CCCCCCHHHH--HHHH-hccCCccEEecCchH--HHHHHHHcCCCeEE
Q 006006 74 RERKGCFDVVLSDV-HMPDMDGFKL--LEHI-GLEMDLPVITDGRVS--AVMRGIRHGACDYL 130 (665)
Q Consensus 74 re~k~~PDLVIlDI-~MP~mDGlEL--Le~I-r~~~~IPVIa~sd~e--~a~kALe~GA~DYL 130 (665)
-+.+ .++|+++. ..|-+.-.++ +.++ ++..++++|..+.+. +..+.+++|||=.+
T Consensus 137 l~~~--t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~pL~~GaDivv 197 (386)
T PF01053_consen 137 LRPN--TKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQNPLELGADIVV 197 (386)
T ss_dssp HCTT--EEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC-GGGGT-SEEE
T ss_pred cccc--ceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceeeeccCcCCceEEE
Confidence 3333 89999986 2344444333 2333 333347777433332 34567788876443
No 338
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=28.43 E-value=4.4e+02 Score=30.93 Aligned_cols=56 Identities=18% Similarity=0.380 Sum_probs=39.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhc--cCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 80 FDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlELLe~Ir~--~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
+|+||+ -|.|| .+++..+. ...+||++ +..|-.+||. ++..+++..+|.+++++..
T Consensus 263 ~DlVIs----iGGDG-TlL~Aar~~~~~~iPILG----------IN~G~LGFLt-~i~~~e~~~~Le~il~G~y 320 (508)
T PLN02935 263 VDLVIT----LGGDG-TVLWAASMFKGPVPPVVP----------FSMGSLGFMT-PFHSEQYRDCLDAILKGPI 320 (508)
T ss_pred CCEEEE----ECCcH-HHHHHHHHhccCCCcEEE----------EeCCCcceec-ccCHHHHHHHHHHHHcCCc
Confidence 677776 36787 35555543 24578874 2467788985 7899999999999987654
No 339
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=28.37 E-value=6e+02 Score=25.23 Aligned_cols=51 Identities=18% Similarity=0.164 Sum_probs=35.0
Q ss_pred HHHHHHHHhccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006006 94 GFKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147 (665)
Q Consensus 94 GlELLe~Ir~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vl 147 (665)
|..+++.+. ..+|||+.+.. ...+.+..|..+|+.++-+.+++.+.++.+.
T Consensus 277 ~~~~~Ea~~--~G~PvI~~~~~-~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~ 327 (353)
T cd03811 277 PNVLLEAMA--LGTPVVATDCP-GPREILEDGENGLLVPVGDEAALAAAALALL 327 (353)
T ss_pred CcHHHHHHH--hCCCEEEcCCC-ChHHHhcCCCceEEECCCCHHHHHHHHHHHH
Confidence 445555553 46788854333 4456778899999999999999976665543
No 340
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=28.26 E-value=5.3e+02 Score=27.63 Aligned_cols=94 Identities=19% Similarity=0.162 Sum_probs=64.5
Q ss_pred HHHHHHHhCCCEEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCccEE--ecCchHHHHH
Q 006006 48 ILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPVI--TDGRVSAVMR 120 (665)
Q Consensus 48 ~Lk~lL~~~gy~V~--tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~---~~~IPVI--a~sd~e~a~k 120 (665)
.++.-|......+. ..-.---..|.+... .+|-+++|.+=...|.-.++.+++. ....||| ...++..+++
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~a--GfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p~g~~~~Ikq 84 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILATA--GFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPPVGDPVMIKQ 84 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHhc--CCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCCCCCHHHHHH
Confidence 45666665444443 222233444555544 4999999998888888888888863 3567888 6789999999
Q ss_pred HHHcCCCeEEeCCCC-HHHHHHHH
Q 006006 121 GIRHGACDYLIKPIR-EEELKNIW 143 (665)
Q Consensus 121 ALe~GA~DYLlKPv~-~eEL~~aL 143 (665)
++..||...|.-=++ .++-+..+
T Consensus 85 ~LD~GAqtlliPmV~s~eqAr~~V 108 (255)
T COG3836 85 LLDIGAQTLLIPMVDTAEQARQAV 108 (255)
T ss_pred HHccccceeeeeccCCHHHHHHHH
Confidence 999999999985554 44444333
No 341
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=28.11 E-value=5.5e+02 Score=28.71 Aligned_cols=99 Identities=15% Similarity=0.273 Sum_probs=60.3
Q ss_pred CccEEEEEe----CCHHHHHHHHHHHHhCC-CEE--EEECCHHHHHHHHHHcCCCceEEEEeCCC--------------C
Q 006006 32 AGLRVLVVD----DDITCLRILEQMLRRCL-YNV--TTCSQAAVALDILRERKGCFDVVLSDVHM--------------P 90 (665)
Q Consensus 32 ~girVLIVD----DD~~ire~Lk~lL~~~g-y~V--~tAsngeEALelLre~k~~PDLVIlDI~M--------------P 90 (665)
++..+|+|| ....+.+.++++-+... ..| .-+.+.+.|.++++.. .|.|.+-+-- |
T Consensus 119 agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aG---ad~vkVGiGpGsiCtTr~v~GvG~P 195 (352)
T PF00478_consen 119 AGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAG---ADAVKVGIGPGSICTTREVTGVGVP 195 (352)
T ss_dssp TT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT----SEEEESSSSSTTBHHHHHHSBSCT
T ss_pred cCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcC---CCEEEEeccCCcccccccccccCCc
Confidence 567889998 33455555555544443 333 3677899999988754 7999988742 2
Q ss_pred CCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEEeCC
Q 006006 91 DMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYLIKP 133 (665)
Q Consensus 91 ~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYLlKP 133 (665)
..+.+--+...+....+|||+ -.....+.+|+.+||+...+=.
T Consensus 196 Q~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~ 241 (352)
T PF00478_consen 196 QLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGS 241 (352)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEEST
T ss_pred HHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeech
Confidence 112222222334456899993 4566778899999999887643
No 342
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.09 E-value=7.3e+02 Score=31.44 Aligned_cols=71 Identities=18% Similarity=0.269 Sum_probs=50.0
Q ss_pred CceEEEEe-CCCCCCCHHHHHHHHhcc--CCccEE-ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 79 CFDVVLSD-VHMPDMDGFKLLEHIGLE--MDLPVI-TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 79 ~PDLVIlD-I~MP~mDGlELLe~Ir~~--~~IPVI-a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
.+-|+|+| ++|-..+.+..+.++-++ .++.+| +..+...+...+..-+.-|-.||++.+++...|++++..
T Consensus 119 k~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 119 RFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 36899999 666555555544333233 345555 555666677777777888999999999999999888765
No 343
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=28.08 E-value=5.3e+02 Score=25.79 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=35.5
Q ss_pred HHHHHHHHhccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 94 GFKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 94 GlELLe~Ir~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
|..+++.+. ..+|+|+.+.. ...+.+..|..+++..+-+.+++.+++..++.
T Consensus 277 ~~~~~Ea~~--~G~Pvi~s~~~-~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~ 328 (359)
T cd03808 277 PRVLLEAMA--MGRPVIATDVP-GCREAVIDGVNGFLVPPGDAEALADAIERLIE 328 (359)
T ss_pred chHHHHHHH--cCCCEEEecCC-CchhhhhcCcceEEECCCCHHHHHHHHHHHHh
Confidence 555666553 45788843222 23345566788999999999999999988654
No 344
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=28.04 E-value=4.3e+02 Score=30.24 Aligned_cols=99 Identities=16% Similarity=0.083 Sum_probs=62.7
Q ss_pred HHHHHHhcCCC-------CCcceeeeeccCCCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCE-E-EEECCHHHHHHHHH
Q 006006 4 LQRIVQSSGGS-------GYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYN-V-TTCSQAAVALDILR 74 (665)
Q Consensus 4 ~~~~V~~mgGs-------g~Gs~f~~~~~~~d~fP~girVLIVDDD~~ire~Lk~lL~~~gy~-V-~tAsngeEALelLr 74 (665)
+...++..++. |.| .|++.++ ....+|+=||=.+...+..+.-.+..+.. + ..+.+.++......
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG-~f~l~lA-----~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~ 358 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVG-TFGLPLA-----KRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW 358 (432)
T ss_pred HHHHHhhcCCCEEEEeccCCC-hhhhhhc-----ccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc
Confidence 45556665652 333 3444443 45579999999999998888888877544 4 36677877777664
Q ss_pred HcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE
Q 006006 75 ERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 75 e~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI 110 (665)
+. ..||+||+|-==.|++ -++++.|.+.....||
T Consensus 359 ~~-~~~d~VvvDPPR~G~~-~~~lk~l~~~~p~~Iv 392 (432)
T COG2265 359 EG-YKPDVVVVDPPRAGAD-REVLKQLAKLKPKRIV 392 (432)
T ss_pred cc-CCCCEEEECCCCCCCC-HHHHHHHHhcCCCcEE
Confidence 22 2499999994222333 2577877554444444
No 345
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=28.00 E-value=2.6e+02 Score=28.59 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCCce-EEEEeCC----CCCCCHHHHHHHHhccCCccEE---ecCchHHHHHHHHc-CCCeEEe
Q 006006 68 VALDILRERKGCFD-VVLSDVH----MPDMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRH-GACDYLI 131 (665)
Q Consensus 68 EALelLre~k~~PD-LVIlDI~----MP~mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~-GA~DYLl 131 (665)
+..+.+.+.. .| |++.++. +++ -.+++++++++...+|+| ...+.+.+.++++. ||+..+.
T Consensus 153 ~~~~~l~~~G--~d~i~v~~i~~~g~~~g-~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 153 EWAKEVEELG--AGEILLTSMDRDGTKKG-YDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred HHHHHHHHCC--CCEEEEeccCCCCCCCC-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 3334444443 77 6665653 222 237888888777789999 34567788888887 8887765
No 346
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=27.80 E-value=3.5e+02 Score=27.30 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCC---------CCHHHHHHHHhc-c-CC-ccEE--ecCchHHHHH---HHHcCC
Q 006006 64 SQAAVALDILRERKGCFDVVLSDVHMPD---------MDGFKLLEHIGL-E-MD-LPVI--TDGRVSAVMR---GIRHGA 126 (665)
Q Consensus 64 sngeEALelLre~k~~PDLVIlDI~MP~---------mDGlELLe~Ir~-~-~~-IPVI--a~sd~e~a~k---ALe~GA 126 (665)
.+..+.++.+.... +|.|++|+.=.. .+-.+++..++. . .. .++| ...+.....+ ++..|+
T Consensus 8 ~~~~~~~~~a~~~g--~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~ 85 (221)
T PF03328_consen 8 ANSPKMLEKAAASG--ADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGA 85 (221)
T ss_dssp STSHHHHHHHHTTC--SSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhcC--CCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCC
Confidence 44455666666554 999999997644 233344444433 1 22 3344 3445555666 999999
Q ss_pred CeEEeCCC-CHHHHHHHHHHH
Q 006006 127 CDYLIKPI-REEELKNIWQHV 146 (665)
Q Consensus 127 ~DYLlKPv-~~eEL~~aLq~V 146 (665)
++.++-=+ +.++++.+++.+
T Consensus 86 ~gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 86 DGIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp SEEEETT--SHHHHHHHHHHH
T ss_pred CeeeccccCcHHHHHHHHHHH
Confidence 99876444 577777666554
No 347
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.61 E-value=2.4e+02 Score=30.12 Aligned_cols=101 Identities=20% Similarity=0.327 Sum_probs=56.7
Q ss_pred cEEEEE--eCCHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHH-H-cCCCceEEEEeCCCCCCCHHHHHHHHhccCCc
Q 006006 34 LRVLVV--DDDITCLRILEQMLRR--CLYNVTTCSQAAVALDILR-E-RKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (665)
Q Consensus 34 irVLIV--DDD~~ire~Lk~lL~~--~gy~V~tAsngeEALelLr-e-~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~I 107 (665)
|||.|+ .+.+...+.+.++++| .+..+.......+.+.... . ....+|+||+ -+.||- +++..+.. ..
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGDGT-~L~a~~~~-~~ 74 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELLPPDWEIIYEMEAAKALGMDGLDIEEINADVIIT----IGGDGT-ILRTLQRA-KG 74 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHhcCCEEEEechhhhhcCcccCcccccCCCEEEE----EcCcHH-HHHHHHHc-CC
Confidence 466676 3445555555555443 3555554333222221000 0 0012677766 367884 55655543 34
Q ss_pred cEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 108 PVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 108 PVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
||++- ..|-.+||. .++.+++...+++++++..
T Consensus 75 PilGI----------N~G~lGFL~-~~~~~~~~~~l~~i~~g~~ 107 (271)
T PRK01185 75 PILGI----------NMGGLGFLT-EIEIDEVGSAIKKLIRGEY 107 (271)
T ss_pred CEEEE----------ECCCCccCc-ccCHHHHHHHHHHHHcCCc
Confidence 88731 236678998 6889999999999987653
No 348
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=27.28 E-value=2.2e+02 Score=33.78 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=52.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAs-ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPV 109 (665)
.++++.++|.|+...+.+++ .++.+...+ +-.+.++...-. +.|+||+-+.-++ .-..++..+|+ .+++++
T Consensus 422 ~g~~vvvID~d~~~v~~~~~----~g~~v~~GDat~~~~L~~agi~--~A~~vvv~~~d~~-~n~~i~~~ar~~~p~~~i 494 (621)
T PRK03562 422 SGVKMTVLDHDPDHIETLRK----FGMKVFYGDATRMDLLESAGAA--KAEVLINAIDDPQ-TSLQLVELVKEHFPHLQI 494 (621)
T ss_pred CCCCEEEEECCHHHHHHHHh----cCCeEEEEeCCCHHHHHhcCCC--cCCEEEEEeCCHH-HHHHHHHHHHHhCCCCeE
Confidence 35677777777765554433 355553221 122344433322 3777777653332 23455566654 467788
Q ss_pred E-ecCchHHHHHHHHcCCCeEE
Q 006006 110 I-TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 110 I-a~sd~e~a~kALe~GA~DYL 130 (665)
| -..+.+...+-.+.||+..+
T Consensus 495 iaRa~d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 495 IARARDVDHYIRLRQAGVEKPE 516 (621)
T ss_pred EEEECCHHHHHHHHHCCCCEEe
Confidence 8 45666777777788888654
No 349
>PRK05670 anthranilate synthase component II; Provisional
Probab=27.23 E-value=79 Score=31.27 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=34.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEE
Q 006006 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (665)
Q Consensus 36 VLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIl 85 (665)
|||+|-....-..+.++|.+.++.+..........+.+.... ||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~--~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALN--PDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCC--CCEEEE
Confidence 899999999999999999988888776544321222233333 887776
No 350
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=27.19 E-value=3.1e+02 Score=29.26 Aligned_cols=88 Identities=11% Similarity=0.011 Sum_probs=54.6
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC---CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-c-C
Q 006006 35 RVLVVDDDITCLRILEQMLR----RCL---YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-E-M 105 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~----~~g---y~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~-~ 105 (665)
.|||.|+|-.+.-.+..-+. ..+ ....++.+.+|+.+.+... +|.|.+|-.- .+.++++.. . .
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~g---aDyI~ld~~~-----~e~l~~~~~~~~~ 225 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEAG---ADIIMLDNMS-----PEELREAVALLKG 225 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHcC---CCEEEECCcC-----HHHHHHHHHHcCC
Confidence 57788777554433322222 222 2235889999999987542 8999999432 355555432 2 2
Q ss_pred CccEE--ecCchHHHHHHHHcCCCeEE
Q 006006 106 DLPVI--TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 106 ~IPVI--a~sd~e~a~kALe~GA~DYL 130 (665)
++|++ +--+.+.+.+..+.||+.+-
T Consensus 226 ~ipi~AiGGI~~~ni~~~a~~Gvd~Ia 252 (268)
T cd01572 226 RVLLEASGGITLENIRAYAETGVDYIS 252 (268)
T ss_pred CCcEEEECCCCHHHHHHHHHcCCCEEE
Confidence 57777 44567778888899987653
No 351
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.19 E-value=3.1e+02 Score=29.56 Aligned_cols=63 Identities=11% Similarity=-0.043 Sum_probs=42.7
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCccEE--ecCchHHHHHHHHcCCCeEEe
Q 006006 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVI--TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 61 ~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~--~~~IPVI--a~sd~e~a~kALe~GA~DYLl 131 (665)
.++.+.+|+.+.++.. +|+|.+|- | +.+.++++.+ ...+|++ +--+.+.+.+..+.||+.+-+
T Consensus 194 VEv~tleea~eA~~~g---aD~I~LD~-~----~~e~l~~~v~~~~~~i~leAsGGIt~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 194 VEVESLDELRQALAAG---ADIVMLDE-L----SLDDMREAVRLTAGRAKLEASGGINESTLRVIAETGVDYISI 260 (277)
T ss_pred EEeCCHHHHHHHHHcC---CCEEEECC-C----CHHHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 4788999998888543 89999983 3 3344444322 2467777 345677787888899876643
No 352
>PRK10060 RNase II stability modulator; Provisional
Probab=27.17 E-value=4e+02 Score=31.70 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHHcCCCceEEEEeCCC----C-CCCHHHHHHHH---hccCCccEE--
Q 006006 43 ITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM----P-DMDGFKLLEHI---GLEMDLPVI-- 110 (665)
Q Consensus 43 ~~ire~Lk~lL~~~gy~V~--tAsngeEALelLre~k~~PDLVIlDI~M----P-~mDGlELLe~I---r~~~~IPVI-- 110 (665)
...... ...|+..|+.+. -+..+-..+..+...+ +|.|=+|-.+ . +.....+++.| .+...+.+|
T Consensus 541 ~~~~~~-l~~L~~~G~~ialDdfGtg~ssl~~L~~l~--~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAe 617 (663)
T PRK10060 541 ELALSV-IQQFSQLGAQVHLDDFGTGYSSLSQLARFP--IDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAE 617 (663)
T ss_pred HHHHHH-HHHHHHCCCEEEEECCCCchhhHHHHHhCC--CCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEe
Confidence 333333 455566688776 4677888889898877 9999999532 2 22345555555 234567888
Q ss_pred ecCchHHHHHHHHcCCC----eEEeCCCCHHHHHHHHHH
Q 006006 111 TDGRVSAVMRGIRHGAC----DYLIKPIREEELKNIWQH 145 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~----DYLlKPv~~eEL~~aLq~ 145 (665)
.-.+.+....+.+.|++ .|+.||...+++...+++
T Consensus 618 GVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 618 GVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred cCCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 44566666666788875 357899999999776644
No 353
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=27.08 E-value=1.3e+02 Score=32.11 Aligned_cols=77 Identities=22% Similarity=0.208 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCe-EEeCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACD-YLIKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~D-YLlKPv~~eEL~ 140 (665)
+.++|++.++... ..++..++--++ .+.++.+++|++...+||++ ..+.....+.++.++.| ...||....=+.
T Consensus 189 ~~~~A~~~~~~l~-~~~l~~iEeP~~-~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~ 266 (316)
T cd03319 189 TPEEAVELLRELA-ELGVELIEQPVP-AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLT 266 (316)
T ss_pred CHHHHHHHHHHHH-hcCCCEEECCCC-CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHH
Confidence 4467777766543 256666665454 34567778888777899883 33456677888866555 468887654444
Q ss_pred HHH
Q 006006 141 NIW 143 (665)
Q Consensus 141 ~aL 143 (665)
+++
T Consensus 267 ~~~ 269 (316)
T cd03319 267 EAL 269 (316)
T ss_pred HHH
Confidence 433
No 354
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=27.03 E-value=4e+02 Score=28.93 Aligned_cols=94 Identities=11% Similarity=0.095 Sum_probs=56.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEE------EC---CHHHHHHHHHHcCCCceEEEEeCCC-CC-C---CHHHHHHHH
Q 006006 36 VLVVDDDITCLRILEQMLRRCLYNVTT------CS---QAAVALDILRERKGCFDVVLSDVHM-PD-M---DGFKLLEHI 101 (665)
Q Consensus 36 VLIVDDD~~ire~Lk~lL~~~gy~V~t------As---ngeEALelLre~k~~PDLVIlDI~M-P~-m---DGlELLe~I 101 (665)
-.+..|-..+.+.++.+.....+.|.. -. +..+..+.+++.. .|.|.+.-+. ++ . -.+++++++
T Consensus 112 s~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G--~d~i~vh~rt~~~~~~G~a~~~~i~~i 189 (321)
T PRK10415 112 SALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCG--IQALTIHGRTRACLFNGEAEYDSIRAV 189 (321)
T ss_pred cHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhC--CCEEEEecCccccccCCCcChHHHHHH
Confidence 345566667777777666554443331 11 2234444444443 7877665433 21 1 238888999
Q ss_pred hccCCccEEe---cCchHHHHHHHH-cCCCeEEe
Q 006006 102 GLEMDLPVIT---DGRVSAVMRGIR-HGACDYLI 131 (665)
Q Consensus 102 r~~~~IPVIa---~sd~e~a~kALe-~GA~DYLl 131 (665)
++...+|||+ -.+.+.+.++++ .||+....
T Consensus 190 k~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 190 KQKVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred HHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 8878899993 346677788886 58877654
No 355
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=26.87 E-value=54 Score=26.31 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=22.7
Q ss_pred HHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHH
Q 006006 246 RILELMNVPGLTRENVASHLQEINLQKFRLYLKR 279 (665)
Q Consensus 246 kILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK 279 (665)
+|.+++..-++|.+++|..+|.+ .++++++.+-
T Consensus 3 ~lk~~r~~~~lt~~~~a~~~~i~-~~~i~~~e~g 35 (64)
T PF12844_consen 3 RLKELREEKGLTQKDLAEKLGIS-RSTISKIENG 35 (64)
T ss_dssp HHHHHHHHCT--HHHHHHHHTS--HHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHCC
Confidence 45566677899999999999986 6666666544
No 356
>PRK04302 triosephosphate isomerase; Provisional
Probab=26.84 E-value=6.9e+02 Score=25.42 Aligned_cols=110 Identities=11% Similarity=0.092 Sum_probs=57.6
Q ss_pred CccEEEEEeCC------HHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHHcCCCceEEEEeCC--CC---C-----CCH
Q 006006 32 AGLRVLVVDDD------ITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVH--MP---D-----MDG 94 (665)
Q Consensus 32 ~girVLIVDDD------~~ire~Lk~lL~~~gy~V~-tAsngeEALelLre~k~~PDLVIlDI~--MP---~-----mDG 94 (665)
.+...+|+.|. ..+.+.+... .+.+..+. .+.+.+++.. +.+.. +|+|-..-. +. + -.+
T Consensus 84 ~G~~~vii~~ser~~~~~e~~~~v~~a-~~~Gl~~I~~v~~~~~~~~-~~~~~--~~~I~~~p~~~igt~~~~~~~~~~~ 159 (223)
T PRK04302 84 AGAVGTLINHSERRLTLADIEAVVERA-KKLGLESVVCVNNPETSAA-AAALG--PDYVAVEPPELIGTGIPVSKAKPEV 159 (223)
T ss_pred cCCCEEEEeccccccCHHHHHHHHHHH-HHCCCeEEEEcCCHHHHHH-HhcCC--CCEEEEeCccccccCCCCCcCCHHH
Confidence 34555666652 2233333333 33466554 4455455444 44333 787754311 10 1 112
Q ss_pred -HHHHHHHhcc-CCccEE---ecCchHHHHHHHHcCCCeEEeCC--CCHHHHHHHHHH
Q 006006 95 -FKLLEHIGLE-MDLPVI---TDGRVSAVMRGIRHGACDYLIKP--IREEELKNIWQH 145 (665)
Q Consensus 95 -lELLe~Ir~~-~~IPVI---a~sd~e~a~kALe~GA~DYLlKP--v~~eEL~~aLq~ 145 (665)
.++++.+++. .++||| .-.+.+.+.++++.||++.+.-- ++.+.+...++.
T Consensus 160 i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~ 217 (223)
T PRK04302 160 VEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRD 217 (223)
T ss_pred HHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHH
Confidence 3445556653 468888 45677888888999999988643 233344444443
No 357
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=26.83 E-value=1.8e+02 Score=29.57 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeE
Q 006006 67 AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDY 129 (665)
Q Consensus 67 eEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DY 129 (665)
+.+++.+.... ||.|= + ||+ =--++++++.+..++|||+ -.+.+.+.+|+++||...
T Consensus 111 ~~~~~~i~~~~--pD~iE--v-LPG-v~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~av 170 (181)
T COG1954 111 EKGIKQIEKSE--PDFIE--V-LPG-VMPKVIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAV 170 (181)
T ss_pred HHHHHHHHHcC--CCEEE--E-cCc-ccHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEE
Confidence 46677777666 89653 2 777 3357888888888999993 467888999999999653
No 358
>PF13518 HTH_28: Helix-turn-helix domain
Probab=26.63 E-value=1e+02 Score=23.45 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=24.0
Q ss_pred HHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHh
Q 006006 247 ILELMNVPGLTRENVASHLQEINLQKFRLYLKRLN 281 (665)
Q Consensus 247 ILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~ 281 (665)
|++++. .+.++.+||.++|. +.+-.++..|++-
T Consensus 5 iv~~~~-~g~s~~~~a~~~gi-s~~tv~~w~~~y~ 37 (52)
T PF13518_consen 5 IVELYL-EGESVREIAREFGI-SRSTVYRWIKRYR 37 (52)
T ss_pred HHHHHH-cCCCHHHHHHHHCC-CHhHHHHHHHHHH
Confidence 345555 46699999999999 5566677777664
No 359
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=26.60 E-value=7.9e+02 Score=27.14 Aligned_cols=95 Identities=12% Similarity=0.129 Sum_probs=57.5
Q ss_pred EEEEEeCC----HHHHHHHHHHHHhCC-CEE--EEECCHHHHHHHHHHcCCCceEEEEeCCCC-----------CCC--H
Q 006006 35 RVLVVDDD----ITCLRILEQMLRRCL-YNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMD--G 94 (665)
Q Consensus 35 rVLIVDDD----~~ire~Lk~lL~~~g-y~V--~tAsngeEALelLre~k~~PDLVIlDI~MP-----------~mD--G 94 (665)
.++++|-- ..+.+.++.+-+... ..| ..+.+.+.|..+++.. .|.|.+-+.-. +.- +
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aG---ad~I~V~~G~G~~~~tr~~~g~g~~~~~ 186 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAG---ADATKVGIGPGKVCITKIKTGFGTGGWQ 186 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcC---cCEEEECCCCCccccceeeeccCCCchH
Confidence 66666652 445555555444432 212 2356888888877643 68776543111 111 3
Q ss_pred HHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEeC
Q 006006 95 FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 95 lELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlK 132 (665)
+..+..++...++||| .-.....+.+|+.+||+....=
T Consensus 187 l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 187 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 4556666666679999 3456667889999999988664
No 360
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=26.53 E-value=7.7e+02 Score=25.90 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=58.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEE--CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCc
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDL 107 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~g--y~V~tA--sngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~I 107 (665)
.+||.||---..........+.... +.+..+ .+.+.|.+..++.. ..-+..|+ -++ +.. ..++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~--~~~~~~~~-------~~l---l~~~~iD~ 70 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG--IAKAYTDL-------EEL---LADPDIDA 70 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC--CCcccCCH-------HHH---hcCCCCCE
Confidence 4788888866555444444444432 244333 34444555554433 22122221 112 222 2355
Q ss_pred cEE---ecCchHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHH
Q 006006 108 PVI---TDGRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHV 146 (665)
Q Consensus 108 PVI---a~sd~e~a~kALe~GA~DYLlKPv--~~eEL~~aLq~V 146 (665)
.+| .....+.+.+|+++|..=|+-||+ +.+|..+.++.+
T Consensus 71 V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a 114 (342)
T COG0673 71 VYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELA 114 (342)
T ss_pred EEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 556 355678889999999999999996 677887666554
No 361
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.40 E-value=4.8e+02 Score=27.53 Aligned_cols=94 Identities=15% Similarity=0.216 Sum_probs=57.4
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe
Q 006006 34 LRVLVVDDD--ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT 111 (665)
Q Consensus 34 irVLIVDDD--~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa 111 (665)
|++.|+..+ ....+.++..|...+..+....+.. ......|+||+ -+.|| .+++.++.. .+||++
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~d~vi~----iGGDG-T~L~a~~~~-~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASA-------SGKVTADLIIV----VGGDG-TVLKAAKKV-GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccc-------cccCCCCEEEE----ECCcH-HHHHHHHHc-CCCEEE
Confidence 455555444 3344455556665566665443322 11223788887 36787 355666554 889883
Q ss_pred cCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 112 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 112 ~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
-. .|-.+||. .++.+++.++++++.++..
T Consensus 68 in----------~G~lGfl~-~~~~~~~~~~l~~~~~g~~ 96 (256)
T PRK14075 68 FK----------AGRLGFLS-SYTLEEIDRFLEDLKNWNF 96 (256)
T ss_pred Ee----------CCCCcccc-ccCHHHHHHHHHHHHcCCc
Confidence 22 45577887 6888999999998877653
No 362
>PHA01976 helix-turn-helix protein
Probab=26.30 E-value=75 Score=25.73 Aligned_cols=34 Identities=3% Similarity=-0.025 Sum_probs=25.6
Q ss_pred HHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHH
Q 006006 245 KRILELMNVPGLTRENVASHLQEINLQKFRLYLKR 279 (665)
Q Consensus 245 KkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK 279 (665)
++|..+....++|..++|..+|.+ .++++++.+.
T Consensus 5 ~rl~~~R~~~glt~~~lA~~~gvs-~~~v~~~e~g 38 (67)
T PHA01976 5 IQLIKARNARAWSAPELSRRAGVR-HSLIYDFEAD 38 (67)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCC-HHHHHHHHcC
Confidence 566667777999999999999954 5666666543
No 363
>PRK00654 glgA glycogen synthase; Provisional
Probab=26.24 E-value=5e+02 Score=29.26 Aligned_cols=108 Identities=13% Similarity=0.117 Sum_probs=58.4
Q ss_pred ccEEEEEeCC-HHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccE
Q 006006 33 GLRVLVVDDD-ITCLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (665)
Q Consensus 33 girVLIVDDD-~~ire~Lk~lL~~~gy~V~t--AsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPV 109 (665)
.++++|+.+- +...+.++++.+..+..+.. .-+.+.+-.++. . .|++++=-. -+.-|+..++.+. ..+|+
T Consensus 311 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~-~---aDv~v~PS~-~E~~gl~~lEAma--~G~p~ 383 (466)
T PRK00654 311 GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYA-G---ADMFLMPSR-FEPCGLTQLYALR--YGTLP 383 (466)
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHh-h---CCEEEeCCC-CCCchHHHHHHHH--CCCCE
Confidence 4667777653 34555666666554433321 122222222222 1 577776432 3445666666654 23455
Q ss_pred EecCchHHHHHHHHcC------CCeEEeCCCCHHHHHHHHHHHHH
Q 006006 110 ITDGRVSAVMRGIRHG------ACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 110 Ia~sd~e~a~kALe~G------A~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
|+... .-..+.+..| ..+|+..|-+.++|.+++.+++.
T Consensus 384 V~~~~-gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 384 IVRRT-GGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALE 427 (466)
T ss_pred EEeCC-CCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 52111 1112223334 78999999999999999988765
No 364
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=26.22 E-value=45 Score=26.70 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=21.8
Q ss_pred HHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHH
Q 006006 246 RILELMNVPGLTRENVASHLQEINLQKFRLYLKR 279 (665)
Q Consensus 246 kILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK 279 (665)
+|.++|..-+++.+++|...|.+. +.+++.++.
T Consensus 1 ~L~~~m~~~~it~~~La~~~gis~-~tl~~~~~~ 33 (63)
T PF13443_consen 1 KLKELMAERGITQKDLARKTGISR-STLSRILNG 33 (63)
T ss_dssp HHHHHHHHTT--HHHHHHHHT--H-HHHHHHHTT
T ss_pred CHHHHHHHcCCCHHHHHHHHCcCH-HHHHHHHhc
Confidence 356788889999999999998765 556666553
No 365
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.18 E-value=4e+02 Score=28.89 Aligned_cols=92 Identities=11% Similarity=0.013 Sum_probs=0.0
Q ss_pred EEEEeCCHH--------HHHHHHHHHHhCCC---EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc
Q 006006 36 VLVVDDDIT--------CLRILEQMLRRCLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE 104 (665)
Q Consensus 36 VLIVDDD~~--------ire~Lk~lL~~~gy---~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~ 104 (665)
|||=|.|-. +.+.++.+-....+ ....+.+.+++.+.++.. +|+|++| +|.-.+--++++.++..
T Consensus 162 vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~g---aDiImLD-n~s~e~l~~av~~~~~~ 237 (281)
T PRK06543 162 VMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAAG---VDTIMLD-NFSLDDLREGVELVDGR 237 (281)
T ss_pred EEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhcC---CCEEEEC-CCCHHHHHHHHHHhCCC
Q ss_pred CCccEEecCchHHHHHHHHcCCCeEEe
Q 006006 105 MDLPVITDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 105 ~~IPVIa~sd~e~a~kALe~GA~DYLl 131 (665)
..+-+-+.-+.+.+.+-.+.|+|-.-+
T Consensus 238 ~~leaSGgI~~~ni~~yA~tGVD~Is~ 264 (281)
T PRK06543 238 AIVEASGNVNLNTVGAIASTGVDVISV 264 (281)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEEEe
No 366
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=26.06 E-value=67 Score=24.70 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=19.0
Q ss_pred HHHHHHhCCCCCCHHHHHhhhcccchhHHHHHH
Q 006006 245 KRILELMNVPGLTRENVASHLQEINLQKFRLYL 277 (665)
Q Consensus 245 KkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~F 277 (665)
..|++|+... +++.+||..+|-+-.. +.+++
T Consensus 12 ~~i~~l~~~G-~si~~IA~~~gvsr~T-vyR~l 42 (45)
T PF02796_consen 12 EEIKELYAEG-MSIAEIAKQFGVSRST-VYRYL 42 (45)
T ss_dssp HHHHHHHHTT---HHHHHHHTTS-HHH-HHHHH
T ss_pred HHHHHHHHCC-CCHHHHHHHHCcCHHH-HHHHH
Confidence 3456776555 9999999999986553 33443
No 367
>PRK00811 spermidine synthase; Provisional
Probab=26.04 E-value=2.9e+02 Score=29.39 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=39.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC------CCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCC
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRC------LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD 91 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~------gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP~ 91 (665)
..-+|.+||=|+.+.+..++.+... .-++. ...++.+.+.. ..+.+|+||+|.--|.
T Consensus 99 ~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 99 SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFDVIIVDSTDPV 162 (283)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCcccEEEECCCCCC
Confidence 3458999999999999999988642 12332 45666655543 2335999999986553
No 368
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=25.98 E-value=2.6e+02 Score=30.10 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=50.0
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCC-----C--CCCHHHHHHHHhccCCccEEec----CchHHHHHHHHcCCCeEE
Q 006006 62 TCSQAAVALDILRERKGCFDVVLSDVHM-----P--DMDGFKLLEHIGLEMDLPVITD----GRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 62 tAsngeEALelLre~k~~PDLVIlDI~M-----P--~mDGlELLe~Ir~~~~IPVIa~----sd~e~a~kALe~GA~DYL 130 (665)
++.+.++|.+.+++.. +|.+-+-+-- + ..=|++.+++|++...+|++.+ -..+.+.++++.|++..=
T Consensus 151 s~t~~eea~~f~~~tg--~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 151 LLTSTTEAKRFAEETD--VDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred eeCCHHHHHHHHHhhC--CCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEE
Confidence 3678899999887654 8888773311 1 1237899999987778998833 377889999999998764
Q ss_pred e
Q 006006 131 I 131 (665)
Q Consensus 131 l 131 (665)
.
T Consensus 229 v 229 (281)
T PRK06806 229 V 229 (281)
T ss_pred E
Confidence 4
No 369
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=25.92 E-value=2.4e+02 Score=29.09 Aligned_cols=78 Identities=14% Similarity=0.099 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhccCCccEE--------ecCchHHHHHHHHcCCCeEEeCC
Q 006006 64 SQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLEMDLPVI--------TDGRVSAVMRGIRHGACDYLIKP 133 (665)
Q Consensus 64 sngeEALelLre~k~~PDLVIlDI~MP~--mDGlELLe~Ir~~~~IPVI--------a~sd~e~a~kALe~GA~DYLlKP 133 (665)
.+.+++++++++.. +++..+|+.++- .-|.++++.|++. ..+++ ......++..+.+.||+-+..-+
T Consensus 12 ~~~~~~l~~~~~~~--~~~~~ikvg~~~f~~~G~~~i~~l~~~-~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itvH~ 88 (230)
T PRK00230 12 PSKEEALAFLDQLD--PAVLFVKVGMELFTAGGPQFVRELKQR-GFKVFLDLKLHDIPNTVAKAVRALAKLGVDMVNVHA 88 (230)
T ss_pred CCHHHHHHHHHhcC--CcccEEEEcHHHHHhcCHHHHHHHHhc-CCCEEEEeehhhccccHHHHHHHHHHcCCCEEEEcc
Confidence 45678888887765 677788887763 3577888888754 23444 22333455667889998887777
Q ss_pred CCHHHHHHHHH
Q 006006 134 IREEELKNIWQ 144 (665)
Q Consensus 134 v~~eEL~~aLq 144 (665)
..-.+..+...
T Consensus 89 ~ag~~~i~~~~ 99 (230)
T PRK00230 89 SGGPRMMKAAR 99 (230)
T ss_pred cCCHHHHHHHH
Confidence 65544433333
No 370
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=25.91 E-value=5.3e+02 Score=26.63 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=61.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~g--y~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI 110 (665)
.++++||.+-+. ...+++.++..+ -.|......++..+.+.. .|++++--.. +.-|+.++|.+. ..+|||
T Consensus 223 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~ps~~-E~~~~~~lEAma--~G~PvI 294 (358)
T cd03812 223 NAKLLLVGDGEL-EEEIKKKVKELGLEDKVIFLGVRNDVPELLQA----MDVFLFPSLY-EGLPLVLIEAQA--SGLPCI 294 (358)
T ss_pred CeEEEEEeCCch-HHHHHHHHHhcCCCCcEEEecccCCHHHHHHh----cCEEEecccc-cCCCHHHHHHHH--hCCCEE
Confidence 467777776543 234444444432 223333333344444432 5777754432 334677777764 468888
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
+.+... ..+.+.. ...|+..+-+++++.+++.+++...
T Consensus 295 ~s~~~~-~~~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 295 LSDTIT-KEVDLTD-LVKFLSLDESPEIWAEEILKLKSED 332 (358)
T ss_pred EEcCCc-hhhhhcc-CccEEeCCCCHHHHHHHHHHHHhCc
Confidence 433222 2334444 4578887778899999999987654
No 371
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.86 E-value=4.9e+02 Score=27.62 Aligned_cols=95 Identities=12% Similarity=0.051 Sum_probs=55.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEE-E--CCHHHHHHHHHHcCCCceEEEE-eC-CCCC------CCHHHHHHHHhcc
Q 006006 36 VLVVDDDITCLRILEQMLRRCLYNVTT-C--SQAAVALDILRERKGCFDVVLS-DV-HMPD------MDGFKLLEHIGLE 104 (665)
Q Consensus 36 VLIVDDD~~ire~Lk~lL~~~gy~V~t-A--sngeEALelLre~k~~PDLVIl-DI-~MP~------mDGlELLe~Ir~~ 104 (665)
++|.|=.....+.+...+++.+..... + ++..+=++.+.+.. .+.|-+ .. .-.+ .+..++++++|+.
T Consensus 121 viipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s--~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 121 LIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHA--SGFVYYVSRAGVTGARSADAADLAELVARLKAH 198 (258)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC--CCcEEEEeCCCCCCcccCCCccHHHHHHHHHhc
Confidence 344444444445555566666654332 2 23245555555554 554432 21 1111 2345688888887
Q ss_pred CCccEE---ecCchHHHHHHHHcCCCeEEeCC
Q 006006 105 MDLPVI---TDGRVSAVMRGIRHGACDYLIKP 133 (665)
Q Consensus 105 ~~IPVI---a~sd~e~a~kALe~GA~DYLlKP 133 (665)
.++|++ +-.+.+.+.++.+. |++.+.-.
T Consensus 199 ~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 199 TDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred CCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 789988 45677888888875 99998865
No 372
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.82 E-value=2.8e+02 Score=30.17 Aligned_cols=57 Identities=16% Similarity=0.293 Sum_probs=39.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhc--cCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhh
Q 006006 80 FDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 152 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlELLe~Ir~--~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~ 152 (665)
+|+||+ -+.|| .+++..+. ...+||++- ..|-.+||.- ++.+++.+.+++++++...
T Consensus 69 ~Dlvi~----iGGDG-TlL~aar~~~~~~iPilGI----------N~G~lGFLt~-~~~~~~~~~l~~l~~g~y~ 127 (305)
T PRK02649 69 MKFAIV----LGGDG-TVLSAARQLAPCGIPLLTI----------NTGHLGFLTE-AYLNQLDEAIDQVLAGQYT 127 (305)
T ss_pred cCEEEE----EeCcH-HHHHHHHHhcCCCCcEEEE----------eCCCCccccc-CCHHHHHHHHHHHHcCCcE
Confidence 677776 36787 45565553 357888842 2367788884 6789999999999877543
No 373
>CHL00101 trpG anthranilate synthase component 2
Probab=25.72 E-value=80 Score=31.41 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=34.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEE
Q 006006 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (665)
Q Consensus 36 VLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIl 85 (665)
|||||.....-..|.+.|+..+..+..+......++.+.... ||.||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~--~dgiii 49 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLN--IRHIII 49 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCC--CCEEEE
Confidence 899999999999999999998888877665432222233333 887775
No 374
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=25.69 E-value=7.7e+02 Score=25.98 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=35.3
Q ss_pred HHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEE------eCCCCHHHHHHHHHHHHH
Q 006006 95 FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYL------IKPIREEELKNIWQHVVR 148 (665)
Q Consensus 95 lELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYL------lKPv~~eEL~~aLq~Vlr 148 (665)
+++++++++..++||| .-.+.+.+.+++..||+..- .-|.-..++.+-+.+.++
T Consensus 220 ~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~ 282 (296)
T cd04740 220 LRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLD 282 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHH
Confidence 5778888776789999 34577889999999987542 234434444444444333
No 375
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=25.62 E-value=2.3e+02 Score=28.28 Aligned_cols=67 Identities=19% Similarity=0.107 Sum_probs=42.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006006 35 RVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~~gy~--V~-tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~I 101 (665)
+|..||.++...+.+++-++..+.. +. ...+..+++..+......+|+|++|==.....--++++.+
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l 143 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELC 143 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHH
Confidence 7999999999999999888876542 32 4455656655432221137999998533332233455555
No 376
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=25.62 E-value=3.2e+02 Score=27.77 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=48.7
Q ss_pred ECCHHHHHHHHHHcCCCc-eEEEEeCCCCCC---CHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEeC
Q 006006 63 CSQAAVALDILRERKGCF-DVVLSDVHMPDM---DGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 63 AsngeEALelLre~k~~P-DLVIlDI~MP~m---DGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlK 132 (665)
..+..++.+.+.+.. + .|+++|+.--+. .-+++++++.+...+|++ ...+.+.+.++++.|++..++-
T Consensus 29 ~~dp~~~a~~~~~~g--~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 29 IGDPVNAARIYNAKG--ADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCCHHHHHHHHHHcC--CCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 347777777776554 5 589999866432 346778888776778888 4566777788888998877764
No 377
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=25.61 E-value=6.1e+02 Score=31.42 Aligned_cols=118 Identities=18% Similarity=0.234 Sum_probs=77.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC----CCEE-EEECCHHHHHH----------------HHHHcCCCceEEEEeCCC
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRRC----LYNV-TTCSQAAVALD----------------ILRERKGCFDVVLSDVHM 89 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~~----gy~V-~tAsngeEALe----------------lLre~k~~PDLVIlDI~M 89 (665)
+...+|++...++...+.+..+++.. +.++ ..|.++.|.++ .++.. -+|++++|.+-
T Consensus 235 ~~~vnI~vhGHnp~l~~~iv~~~~~~el~~gI~~~GiCCTg~e~~R~~~g~~~~Gn~~~qe~~i~TG--avD~~VvD~QC 312 (781)
T PRK00941 235 KSKPVILVIGHNVAPGTYIIDYLEENGLTDKVEVCGICCTAIDITRYSEKAKVVGPLSKQLKFIRSG--IPDVIVVDEQC 312 (781)
T ss_pred CCCcEEEEECCCchHHHHHHHHHhCcchhhCceEEEEecccchHhhhccCCcccCcHHHHHHHHHcC--CCcEEEEeccc
Confidence 45679999999999999999887632 4443 35666666542 23333 49999999976
Q ss_pred CCCCHHHHHHHHhc---------cCCccEEecCchHHHHHHHHcCC--CeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 90 PDMDGFKLLEHIGL---------EMDLPVITDGRVSAVMRGIRHGA--CDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 90 P~mDGlELLe~Ir~---------~~~IPVIa~sd~e~a~kALe~GA--~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
---+=.++++.... ...+|=|.+.+.+.+.+.+..|- -.+|+-|....|+.-.+...+...
T Consensus 313 i~p~L~eiA~~ygt~lItTs~k~~~eLPdit~~die~Ii~~L~~~~~~g~~i~~~~k~g~~a~~~a~~~~~~ 384 (781)
T PRK00941 313 VRTDILEEAKKLGIPVIATNDKICLGLPDRTDEDVDEIIEDLVSGKIPGALILDPEKVGEVAVRVAKAVAPI 384 (781)
T ss_pred CcccHHHHHHHhCCCEEEecccccccCCCCCccCHHHHHHHHHhCCCCeeEEecHHHHHHHHHHHHHHHhhh
Confidence 44444555555421 12344446778888888776655 557788888888765555554443
No 378
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=25.47 E-value=3.5e+02 Score=35.09 Aligned_cols=99 Identities=14% Similarity=0.236 Sum_probs=66.0
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCC-CCCH-HHHHHHHhc
Q 006006 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMP-DMDG-FKLLEHIGL 103 (665)
Q Consensus 33 girVLIV----DDD~~ire~Lk~lL~~~gy~V~tAs---ngeEALelLre~k~~PDLVIlDI~MP-~mDG-lELLe~Ir~ 103 (665)
.-+||+. |-|.+=...+.-+|+..||+|.-.. ..++.++.+++++ ||+|.+-..|. .+.. .++++.+++
T Consensus 751 ~gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~--~diVgLS~L~t~s~~~m~~~i~~L~~ 828 (1229)
T PRK09490 751 NGKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEEN--ADIIGLSGLITPSLDEMVHVAKEMER 828 (1229)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcchhhHHHHHHHHHHHHh
Confidence 3578888 7888888888888888899997543 5688888888877 99999987775 3333 446677754
Q ss_pred c-CCccEE---ecCchHH-HHH-HHH-cCCCeEEeCC
Q 006006 104 E-MDLPVI---TDGRVSA-VMR-GIR-HGACDYLIKP 133 (665)
Q Consensus 104 ~-~~IPVI---a~sd~e~-a~k-ALe-~GA~DYLlKP 133 (665)
. ..++|+ +.-+..+ +.+ +-. .||+.|-.-.
T Consensus 829 ~g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~DA 865 (1229)
T PRK09490 829 QGFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTDA 865 (1229)
T ss_pred cCCCCeEEEEeeccchhhhhhhhhhcccCCcEEecCH
Confidence 4 568877 2222222 111 112 2888887643
No 379
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=25.33 E-value=1.2e+02 Score=23.04 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=21.8
Q ss_pred HHHHHh-CCCCCCHHHHHhhhcccchhHHHHHHHHH
Q 006006 246 RILELM-NVPGLTRENVASHLQEINLQKFRLYLKRL 280 (665)
Q Consensus 246 kILeLL-~~~~LtI~EVAs~VGYsD~qYF~k~FKK~ 280 (665)
+|+.+| ..+++++.|||..+|.+ ...-++++|+.
T Consensus 7 ~Il~~l~~~~~~t~~ela~~~~is-~~tv~~~l~~L 41 (48)
T PF13412_consen 7 KILNYLRENPRITQKELAEKLGIS-RSTVNRYLKKL 41 (48)
T ss_dssp HHHHHHHHCTTS-HHHHHHHHTS--HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHhCCC-HHHHHHHHHHH
Confidence 445554 56889999999999964 34455555544
No 380
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=25.27 E-value=5.8e+02 Score=26.46 Aligned_cols=98 Identities=10% Similarity=0.047 Sum_probs=57.5
Q ss_pred ccE-EEEEeCCHHHHHHHHHHHHhCCCEEEE-E--CCHHHHHHHHHHcCCCceEEEEeCCCCC--------CCHHHHHHH
Q 006006 33 GLR-VLVVDDDITCLRILEQMLRRCLYNVTT-C--SQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEH 100 (665)
Q Consensus 33 gir-VLIVDDD~~ire~Lk~lL~~~gy~V~t-A--sngeEALelLre~k~~PDLVIlDI~MP~--------mDGlELLe~ 100 (665)
+.. |++.|-+.+....+.+.+++.+..... + .+..+.++.+.... .|.|++=-.+|. .+..+.+++
T Consensus 104 G~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~--~~~vy~~s~~g~tG~~~~~~~~~~~~i~~ 181 (242)
T cd04724 104 GVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELA--SGFIYYVSRTGVTGARTELPDDLKELIKR 181 (242)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhC--CCCEEEEeCCCCCCCccCCChhHHHHHHH
Confidence 444 444454555555566666666654432 2 23345555555533 444433222332 134577788
Q ss_pred HhccCCccEE---ecCchHHHHHHHHcCCCeEEeCC
Q 006006 101 IGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKP 133 (665)
Q Consensus 101 Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlKP 133 (665)
+|+..++||+ +-.+.+.+.++.++ |+.++.-.
T Consensus 182 lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 182 IRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred HHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEECH
Confidence 8877788988 45567788888888 99999864
No 381
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=25.26 E-value=7.4e+02 Score=26.35 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=58.6
Q ss_pred CccEEEEEeCCH-HHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCH---------HHHH
Q 006006 32 AGLRVLVVDDDI-TCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPDMDG---------FKLL 98 (665)
Q Consensus 32 ~girVLIVDDD~-~ire~Lk~lL~~~gy~V~---tAsngeEALelLre~k~~PDLVIlDI~MP~mDG---------lELL 98 (665)
.|+.-+|+-|.| .....+...+++.+.... .-++..+-++.+.+.. -..|.+ +..++..| .+++
T Consensus 118 aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a--~gFIY~-vS~~GvTG~~~~~~~~~~~~i 194 (263)
T CHL00200 118 AGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAA--PGCIYL-VSTTGVTGLKTELDKKLKKLI 194 (263)
T ss_pred cCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC--CCcEEE-EcCCCCCCCCccccHHHHHHH
Confidence 455555555554 334445555566554432 2233455565555554 223333 11344333 3456
Q ss_pred HHHhccCCccEE---ecCchHHHHHHHHcCCCeEEeCC
Q 006006 99 EHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKP 133 (665)
Q Consensus 99 e~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlKP 133 (665)
+++|+..++|++ +-.+.+.+.+..++|||+.+.-.
T Consensus 195 ~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 195 ETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 667777788987 55678899999999999999876
No 382
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=25.20 E-value=2e+02 Score=33.03 Aligned_cols=62 Identities=19% Similarity=0.144 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCCceEEEEeCCC-CCCCHHHHHHHHhcc-CCccEE--ecCchHHHHHHHHcCCCeEE
Q 006006 67 AVALDILRERKGCFDVVLSDVHM-PDMDGFKLLEHIGLE-MDLPVI--TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 67 eEALelLre~k~~PDLVIlDI~M-P~mDGlELLe~Ir~~-~~IPVI--a~sd~e~a~kALe~GA~DYL 130 (665)
.++.+.+.+.. +|++++|..- ...+-++.++.|+.. +++||| .-.+.+.+..++++||+...
T Consensus 230 ~e~a~~L~~ag--vdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEAG--VDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHHhC--CCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEE
Confidence 35555555544 8999999743 234566778888765 588988 45678889999999998764
No 383
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=25.18 E-value=7.1e+02 Score=25.00 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=39.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
.|++|+-... +.-|..+++.+. ..+|+|+.+... ..+.+.. .+++.++-+.+++.+.+..++..
T Consensus 269 adi~v~ps~~-e~~~~~~~Ea~a--~g~PvI~~~~~~-~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 269 LDVFVLSSLS-EGFPNVLLEAMA--CGLPVVATDVGD-NAELVGD--TGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred CCEEEeCCcc-ccCCcHHHHHHh--cCCCEEEcCCCC-hHHHhhc--CCEEeCCCCHHHHHHHHHHHHhC
Confidence 4666654333 233556666663 457888433222 2233333 67899999999999999888764
No 384
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=25.16 E-value=7e+02 Score=25.80 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=56.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCC---HHH----HHHHHhc-
Q 006006 35 RVLVVDDDITCLRILEQMLRR---CLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD---GFK----LLEHIGL- 103 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~---~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mD---GlE----LLe~Ir~- 103 (665)
.|.|-.-||+.+..+..+++. .++.+..-+||.-..+.++ . .|.|.+|+..|... .++ .++.+++
T Consensus 75 ~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~~l~--~--~d~v~vs~K~~~sg~~~~~~~~~~~ik~l~~~ 150 (238)
T TIGR03365 75 HVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQDWFR--D--LDDLTLSPKPPSSGMETDWQALDDCIERLDDG 150 (238)
T ss_pred eEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHHHHh--h--CCEEEEeCCCCCCCCCCcHHHHHHHHHHhhhc
Confidence 688999999998767666654 4788877777765444443 2 68899999988522 222 3334432
Q ss_pred -cCCccEE--ecCchHHHHHHHH-cCCCeEEeCCCCH
Q 006006 104 -EMDLPVI--TDGRVSAVMRGIR-HGACDYLIKPIRE 136 (665)
Q Consensus 104 -~~~IPVI--a~sd~e~a~kALe-~GA~DYLlKPv~~ 136 (665)
...+.++ ...+.+.+.+... ..-..++.-|...
T Consensus 151 ~~~~vK~Vv~~~~d~~~a~~~~~~~~~~~~~l~P~~~ 187 (238)
T TIGR03365 151 PQTSLKVVVFDDADYAYAKEVHARYPDLPFYLQPGNH 187 (238)
T ss_pred CceEEEEEECCcccHHHHHHHHHhcCCCCEEECCCCC
Confidence 2224434 3344444444332 1122466777654
No 385
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=25.15 E-value=2.8e+02 Score=27.28 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=54.3
Q ss_pred HHHHHhCCCEEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCCC---CC--HHHHHHHH---hccCCccEE--ecCchHH
Q 006006 50 EQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPD---MD--GFKLLEHI---GLEMDLPVI--TDGRVSA 117 (665)
Q Consensus 50 k~lL~~~gy~V~t--AsngeEALelLre~k~~PDLVIlDI~MP~---mD--GlELLe~I---r~~~~IPVI--a~sd~e~ 117 (665)
...|+..|+.+.. +..+..-+..+...+ ||.|-+|..+-. .+ ...+++.+ .+...+.+| .-++.+.
T Consensus 139 i~~l~~~G~~ialddfg~~~~~~~~l~~l~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~~~ 216 (241)
T smart00052 139 LQRLRELGVRIALDDFGTGYSSLSYLKRLP--VDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGVETPEQ 216 (241)
T ss_pred HHHHHHCCCEEEEeCCCCcHHHHHHHHhCC--CCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecCCCHHH
Confidence 3445666877753 555667777777766 999999965421 11 33445544 234567777 4566677
Q ss_pred HHHHHHcCCC----eEEeCCCCHH
Q 006006 118 VMRGIRHGAC----DYLIKPIREE 137 (665)
Q Consensus 118 a~kALe~GA~----DYLlKPv~~e 137 (665)
...+.+.|++ .|+.||...+
T Consensus 217 ~~~l~~~Gi~~~QG~~~~~p~~~~ 240 (241)
T smart00052 217 LDLLRSLGCDYGQGYLFSRPLPLD 240 (241)
T ss_pred HHHHHHcCCCEEeeceeccCCCCC
Confidence 7777888885 3567786543
No 386
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=25.13 E-value=1.9e+02 Score=30.65 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=35.9
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006006 33 GLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (665)
Q Consensus 33 girVLIVDDD~~i---re~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI 87 (665)
+.+|.+|+-|+.- .+.+..+-+..+..+..+.+..+..+.++... .+|+||+|.
T Consensus 224 ~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~-~~d~vliDt 280 (282)
T TIGR03499 224 NKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR-DKDLILIDT 280 (282)
T ss_pred CCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-CCCEEEEeC
Confidence 3799999988743 33343433334566666777777767676654 489999995
No 387
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=25.09 E-value=3.3e+02 Score=28.57 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=36.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-----CEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCL-----YNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP 90 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~g-----y~V~-tAsngeEALelLre~k~~PDLVIlDI~MP 90 (665)
.-+|.+||-++.+.+..++.+.... -++. ...++.+.++.. ...+|+||+|.--|
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~---~~~yDvIi~D~~~~ 156 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT---ENTFDVIIVDSTDP 156 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC---CCCccEEEEeCCCC
Confidence 3589999999999988888875421 1222 335555554432 33599999997544
No 388
>PRK14098 glycogen synthase; Provisional
Probab=25.03 E-value=4.9e+02 Score=29.86 Aligned_cols=110 Identities=10% Similarity=0.103 Sum_probs=59.3
Q ss_pred ccEEEEEeCC-HHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccE
Q 006006 33 GLRVLVVDDD-ITCLRILEQMLRRCLYNVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (665)
Q Consensus 33 girVLIVDDD-~~ire~Lk~lL~~~gy~V~tA--sngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPV 109 (665)
.++++|+.+- ...++.|+++.+...-.|... -+.+++.+.+.. .|++++=- ..+--|+..++.++. ...||
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~----aDi~l~PS-~~E~~Gl~~lEAma~-G~ppV 409 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG----LDMLLMPG-KIESCGMLQMFAMSY-GTIPV 409 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh----CCEEEeCC-CCCCchHHHHHHHhC-CCCeE
Confidence 4677777653 334556666665543233322 233333344332 57777532 223446666666642 22344
Q ss_pred Ee--cCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 110 IT--DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 110 Ia--~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
+. ..-.+.+.+..+.+..+|+..|.+.++|.+++.+++.
T Consensus 410 v~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 410 AYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred EecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 41 1122222222234678999999999999999988764
No 389
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=24.93 E-value=1.9e+02 Score=30.13 Aligned_cols=73 Identities=21% Similarity=0.244 Sum_probs=47.0
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHH-cCCCceEEEEeCCCCC-CCHHHHHHHH
Q 006006 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRE-RKGCFDVVLSDVHMPD-MDGFKLLEHI 101 (665)
Q Consensus 28 d~fP~girVLIVDDD~~ire~Lk~lL~~~gy~--V~tAsngeEALelLre-~k~~PDLVIlDI~MP~-mDGlELLe~I 101 (665)
...|..-++.-||-++...+..++.+++.+.. |..... -+|++.+.. ....+|+|++|..=+. -.=++.+..+
T Consensus 79 ~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK~~yp~~le~~~~l 155 (219)
T COG4122 79 LALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADKADYPEYLERALPL 155 (219)
T ss_pred hhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHH
Confidence 34454459999999999999999999988642 333321 345555543 2345999999985443 2334444433
No 390
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=24.92 E-value=1e+02 Score=31.39 Aligned_cols=76 Identities=21% Similarity=0.203 Sum_probs=43.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEe-C-CCCCCCHH--HHHHHHhccCCccE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD-V-HMPDMDGF--KLLEHIGLEMDLPV 109 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlD-I-~MP~mDGl--ELLe~Ir~~~~IPV 109 (665)
||||++|........+...|...++.+..+......+....+....+|-||+- = ..|..++. ++++++. ...+||
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~-~~~~Pi 79 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACA-AAGTPL 79 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHH-hCCCCE
Confidence 68999999988888888888888887765543322112122111127777662 1 11332332 2444432 246898
Q ss_pred E
Q 006006 110 I 110 (665)
Q Consensus 110 I 110 (665)
+
T Consensus 80 L 80 (214)
T PRK07765 80 L 80 (214)
T ss_pred E
Confidence 8
No 391
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=24.81 E-value=2.6e+02 Score=29.05 Aligned_cols=75 Identities=19% Similarity=0.250 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCe-EEeCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACD-YLIKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~D-YLlKPv~~eEL~ 140 (665)
+.++|+++++... ..++..++--++. +-++.++++++...+||+. ..+.....++++.++.| +..||....=|.
T Consensus 141 ~~~~a~~~~~~l~-~~~i~~iEeP~~~-~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 218 (265)
T cd03315 141 TPKQAIRALRALE-DLGLDYVEQPLPA-DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLT 218 (265)
T ss_pred CHHHHHHHHHHHH-hcCCCEEECCCCc-ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHH
Confidence 5577777776553 2566566654443 3367777787777899883 34556677788777555 568887654443
Q ss_pred H
Q 006006 141 N 141 (665)
Q Consensus 141 ~ 141 (665)
.
T Consensus 219 ~ 219 (265)
T cd03315 219 K 219 (265)
T ss_pred H
Confidence 3
No 392
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=24.79 E-value=1.4e+02 Score=31.34 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=67.4
Q ss_pred cEEEEEeCC-HHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccE
Q 006006 34 LRVLVVDDD-ITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (665)
Q Consensus 34 irVLIVDDD-~~ire~Lk~lL~~~gy~V~---tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPV 109 (665)
.+|=.|-.. ....+.|..-|.++++.|. ..++...|.+.++++.-+|-+++-|--|++.+|++. ..+...|
T Consensus 40 ~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gidT-----s~pn~VV 114 (262)
T KOG3040|consen 40 VKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGIDT-----SDPNCVV 114 (262)
T ss_pred ceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCccC-----CCCCeEE
Confidence 456666655 5666777788888899885 577888899999988888999999999999998653 3566777
Q ss_pred EecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 110 ITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 110 Ia~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
|+. ..+-|+.+.|.++.+-++..
T Consensus 115 igl-----------------ape~F~y~~ln~AFrvL~e~ 137 (262)
T KOG3040|consen 115 IGL-----------------APEGFSYQRLNRAFRVLLEM 137 (262)
T ss_pred Eec-----------------CcccccHHHHHHHHHHHHcC
Confidence 731 12235556666666666544
No 393
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=24.73 E-value=3.8e+02 Score=27.04 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=39.0
Q ss_pred HHHHHHcCCCceEEEEeCCC---CC-CCHHHHHHHHhccCCccEE-ecCchHHHHHHHHcCCCeE
Q 006006 70 LDILRERKGCFDVVLSDVHM---PD-MDGFKLLEHIGLEMDLPVI-TDGRVSAVMRGIRHGACDY 129 (665)
Q Consensus 70 LelLre~k~~PDLVIlDI~M---P~-mDGlELLe~Ir~~~~IPVI-a~sd~e~a~kALe~GA~DY 129 (665)
++.+.+.. .|+|++|..+ |. ..-.++++.+++...++++ ...+.+.+.++.+.|++-+
T Consensus 81 v~~a~~aG--ad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i 143 (221)
T PRK01130 81 VDALAAAG--ADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFI 143 (221)
T ss_pred HHHHHHcC--CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEE
Confidence 34444444 8999999876 32 4556777877653567777 4456677788999997643
No 394
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=24.71 E-value=3.4e+02 Score=28.06 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCCC---HHHHHHHHhccCCccEE---ecCchHHHHHHHHc---CCCeEEeC--
Q 006006 65 QAAVALDILRERKGCFD-VVLSDVHMPDMD---GFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRH---GACDYLIK-- 132 (665)
Q Consensus 65 ngeEALelLre~k~~PD-LVIlDI~MP~mD---GlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~---GA~DYLlK-- 132 (665)
+..+.++.+.+.. .+ |+++|+..-++. .+++++++++...+||| .-.+.+.+.++.+. ||++.+.-
T Consensus 147 ~~~~~~~~l~~~G--~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra 224 (241)
T PRK14024 147 DLWEVLERLDSAG--CSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKA 224 (241)
T ss_pred cHHHHHHHHHhcC--CCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHH
Q ss_pred ----CCCHHHHHHHHHH
Q 006006 133 ----PIREEELKNIWQH 145 (665)
Q Consensus 133 ----Pv~~eEL~~aLq~ 145 (665)
+++.+++++..++
T Consensus 225 ~~~g~~~~~~~~~~~~~ 241 (241)
T PRK14024 225 LYAGAFTLPEALAVVRR 241 (241)
T ss_pred HHcCCCCHHHHHHHhcC
No 395
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=24.65 E-value=7.2e+02 Score=24.88 Aligned_cols=54 Identities=24% Similarity=0.344 Sum_probs=36.8
Q ss_pred HHHHHHHHhccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 94 GFKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 94 GlELLe~Ir~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
|..+++.+. ..+|+|+.... ...+.+..+..+++.++-+.+++.+++.+++...
T Consensus 292 ~~~~~Ea~~--~G~pvI~~~~~-~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 292 GLVLLEAMA--CGLPVVATDVG-GIPEIITDGENGLLVPPGDPEALAEAILRLLADP 345 (377)
T ss_pred ChHHHHHHh--cCCCEEEecCC-ChHHHhcCCcceeEECCCCHHHHHHHHHHHhcCc
Confidence 444555543 45788843322 2345567788889999999999999998887543
No 396
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.60 E-value=5.2e+02 Score=27.95 Aligned_cols=102 Identities=22% Similarity=0.260 Sum_probs=57.4
Q ss_pred cEEEEEe--CCHHH---HHHHHHHHHhCCCEEEEECCHHHHHH-----HH--HHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006006 34 LRVLVVD--DDITC---LRILEQMLRRCLYNVTTCSQAAVALD-----IL--RERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (665)
Q Consensus 34 irVLIVD--DD~~i---re~Lk~lL~~~gy~V~tAsngeEALe-----lL--re~k~~PDLVIlDI~MP~mDGlELLe~I 101 (665)
.+|.|+- +.+.. .+.+.+.|++.++++.......+.+. .. ......+|+||+ -+.||. +++.+
T Consensus 5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~ 79 (295)
T PRK01231 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDGS-LLGAA 79 (295)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE----EeCcHH-HHHHH
Confidence 3588873 33333 44455556666777765443222111 00 111123788776 356773 33333
Q ss_pred h--ccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 102 G--LEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 102 r--~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
+ ....+||++-. .|=.+||. .++.+++.+++++++++..
T Consensus 80 ~~~~~~~~Pvlgin----------~G~lGFl~-~~~~~~~~~~l~~~~~g~~ 120 (295)
T PRK01231 80 RALARHNVPVLGIN----------RGRLGFLT-DIRPDELEFKLAEVLDGHY 120 (295)
T ss_pred HHhcCCCCCEEEEe----------CCcccccc-cCCHHHHHHHHHHHHcCCc
Confidence 3 23578888322 25667885 6889999999999987653
No 397
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=24.58 E-value=7.8e+02 Score=27.59 Aligned_cols=64 Identities=22% Similarity=0.266 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCC-------CCCCHHHHHHHHhccCCccEEe--cCchHHHHHHHHcCCCeEEe
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHM-------PDMDGFKLLEHIGLEMDLPVIT--DGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~M-------P~mDGlELLe~Ir~~~~IPVIa--~sd~e~a~kALe~GA~DYLl 131 (665)
+..+..+.+.+.. +|+|.++-+. +..+..++.+.+++ .++|||+ -.+.+.++++++.||+..+.
T Consensus 142 ~~~e~a~~l~eaG--vd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~~ipVIaG~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVEAG--VDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-LDVPVIVGGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHHCC--CCEEEEeccchhhhccCCcCCHHHHHHHHHH-CCCCEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 4556666666655 9999997643 11255566555554 5799993 56677888999999998755
No 398
>PLN02335 anthranilate synthase
Probab=24.58 E-value=83 Score=32.33 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=43.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeC-CC-CCCCHHHHHHHHhc-cCCcc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV-HM-PDMDGFKLLEHIGL-EMDLP 108 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI-~M-P~mDGlELLe~Ir~-~~~IP 108 (665)
...+|||||...-+...|.+.|+..++.+.++......++.+.... ||.||+-= -| |...+ ...+.++. ...+|
T Consensus 17 ~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~--~d~iVisgGPg~p~d~~-~~~~~~~~~~~~~P 93 (222)
T PLN02335 17 QNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKN--PRGVLISPGPGTPQDSG-ISLQTVLELGPLVP 93 (222)
T ss_pred ccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcC--CCEEEEcCCCCChhhcc-chHHHHHHhCCCCC
Confidence 3459999997666777788889888887776654221123233333 77766631 11 21122 12333432 34689
Q ss_pred EE
Q 006006 109 VI 110 (665)
Q Consensus 109 VI 110 (665)
|+
T Consensus 94 iL 95 (222)
T PLN02335 94 LF 95 (222)
T ss_pred EE
Confidence 88
No 399
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=24.57 E-value=6.7e+02 Score=25.00 Aligned_cols=89 Identities=12% Similarity=0.120 Sum_probs=51.0
Q ss_pred EeCCHHHHHHHHHHHHhCCCEEEE-EC-------CHHHHHHHHHHcCCCceEEEEeCCC----C-CCCHHHHHHHHhccC
Q 006006 39 VDDDITCLRILEQMLRRCLYNVTT-CS-------QAAVALDILRERKGCFDVVLSDVHM----P-DMDGFKLLEHIGLEM 105 (665)
Q Consensus 39 VDDD~~ire~Lk~lL~~~gy~V~t-As-------ngeEALelLre~k~~PDLVIlDI~M----P-~mDGlELLe~Ir~~~ 105 (665)
..+.....+.++.+-+..+..+.. +. +..+.++.+.+.. .|.|.+.-.. + ..-.++.++++++..
T Consensus 105 ~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~G--vd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~ 182 (231)
T cd02801 105 LKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAG--ASALTVHGRTREQRYSGPADWDYIAEIKEAV 182 (231)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhC--CCEEEECCCCHHHcCCCCCCHHHHHHHHhCC
Confidence 345555666666665544422221 11 2233444444443 7777654432 1 123478888888888
Q ss_pred CccEEe---cCchHHHHHHHHc-CCCeE
Q 006006 106 DLPVIT---DGRVSAVMRGIRH-GACDY 129 (665)
Q Consensus 106 ~IPVIa---~sd~e~a~kALe~-GA~DY 129 (665)
++|||+ -.+.+.+.++++. ||+..
T Consensus 183 ~ipvi~~Ggi~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 183 SIPVIANGDIFSLEDALRCLEQTGVDGV 210 (231)
T ss_pred CCeEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 899993 3467788888887 66654
No 400
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=24.56 E-value=2.4e+02 Score=32.15 Aligned_cols=119 Identities=19% Similarity=0.200 Sum_probs=73.1
Q ss_pred HHHHHHhcCC-------CCCcceeeeeccCCCCCCCccEEEEEeCC-HHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHH
Q 006006 4 LQRIVQSSGG-------SGYGSSRAADVAVPDQFPAGLRVLVVDDD-ITCLRILEQMLRRCLYNVTTCS--QAAVALDIL 73 (665)
Q Consensus 4 ~~~~V~~mgG-------sg~Gs~f~~~~~~~d~fP~girVLIVDDD-~~ire~Lk~lL~~~gy~V~tAs--ngeEALelL 73 (665)
-+.+.++-|| ||.+.++...... .|.+.+|+..+|- --.+..++..+...+..+..+. +.++..+.+
T Consensus 83 e~~iaal~ga~~~l~fsSGmaA~~~al~~L---~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~~~~~~~~~i 159 (409)
T KOG0053|consen 83 ESGIAALEGAAHALLFSSGMAAITVALLHL---LPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVDDLKKILKAI 159 (409)
T ss_pred HHHHHHHhCCceEEEecccHHHHHHHHHHh---cCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechhhHHHHHHhh
Confidence 3556667777 6777777666555 4788898888865 5667788888887666554433 334444444
Q ss_pred HHcCCCceEEEEeCC-CCCC--CHHHHHHHHhccCCccEEecCch--HHHHHHHHcCCCe
Q 006006 74 RERKGCFDVVLSDVH-MPDM--DGFKLLEHIGLEMDLPVITDGRV--SAVMRGIRHGACD 128 (665)
Q Consensus 74 re~k~~PDLVIlDI~-MP~m--DGlELLe~Ir~~~~IPVIa~sd~--e~a~kALe~GA~D 128 (665)
.+ +.++|.+.-- -|-+ --++.+.++.....+.||....+ -+..+++.+|||=
T Consensus 160 ~~---~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADI 216 (409)
T KOG0053|consen 160 KE---NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADI 216 (409)
T ss_pred cc---CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccccChhhcCCCE
Confidence 43 2799998851 1222 22444555544566776632222 2567888998763
No 401
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=24.55 E-value=1.9e+02 Score=31.16 Aligned_cols=80 Identities=20% Similarity=0.404 Sum_probs=54.0
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCC--------CCCCHHHHHHHHhccCCccEE----ecCchHHHHHHHHcCCCeEE
Q 006006 63 CSQAAVALDILRERKGCFDVVLSDVHM--------PDMDGFKLLEHIGLEMDLPVI----TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 63 AsngeEALelLre~k~~PDLVIlDI~M--------P~mDGlELLe~Ir~~~~IPVI----a~sd~e~a~kALe~GA~DYL 130 (665)
.++.++|.+.+++.. +|.+=+-+-- |..| +++++.|++..++|++ .....+..++|++.|+.-.=
T Consensus 154 ~T~peea~~Fv~~Tg--vD~LAvaiGt~HG~y~~~p~Ld-~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiN 230 (284)
T PRK09195 154 YTDPAQAREFVEATG--IDSLAVAIGTAHGMYKGEPKLD-FDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVN 230 (284)
T ss_pred CCCHHHHHHHHHHHC--cCEEeeccCccccccCCCCcCC-HHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEE
Confidence 468889999999876 8877766622 3344 7889999877789988 22345678889999965432
Q ss_pred eCCCCHHHHHHHHHHHHHH
Q 006006 131 IKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 131 lKPv~~eEL~~aLq~Vlrk 149 (665)
+ -.+|+.++.+.++.
T Consensus 231 ---i-~T~l~~a~~~~~~~ 245 (284)
T PRK09195 231 ---V-ATELKIAFSQALKN 245 (284)
T ss_pred ---e-CcHHHHHHHHHHHH
Confidence 1 23455555555544
No 402
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=24.42 E-value=5.8e+02 Score=28.13 Aligned_cols=77 Identities=16% Similarity=0.255 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEecCchHHHHHHHHcCCCeEEeCC-CCHHHHHHHHH
Q 006006 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKP-IREEELKNIWQ 144 (665)
Q Consensus 66 geEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~sd~e~a~kALe~GA~DYLlKP-v~~eEL~~aLq 144 (665)
.++..+.+.... .|+++.--...+ =|+.+++.+. ..+|||+.+ .....+.+..|..+++.-| .+.++|.+++.
T Consensus 299 ~~e~~~~~~~~~--~~v~v~~S~~Eg-~p~~llEAma--~G~PVIas~-vgg~~e~i~~~~~G~l~~~~~~~~~la~~I~ 372 (407)
T cd04946 299 NSEVYKLYKENP--VDVFVNLSESEG-LPVSIMEAMS--FGIPVIATN-VGGTPEIVDNGGNGLLLSKDPTPNELVSSLS 372 (407)
T ss_pred hHHHHHHHhhcC--CCEEEeCCcccc-ccHHHHHHHH--cCCCEEeCC-CCCcHHHhcCCCcEEEeCCCCCHHHHHHHHH
Confidence 344445444332 555543222212 2445666653 457898543 2334567778888998876 47899999999
Q ss_pred HHHH
Q 006006 145 HVVR 148 (665)
Q Consensus 145 ~Vlr 148 (665)
+++.
T Consensus 373 ~ll~ 376 (407)
T cd04946 373 KFID 376 (407)
T ss_pred HHHh
Confidence 8875
No 403
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=24.37 E-value=2.1e+02 Score=30.44 Aligned_cols=89 Identities=10% Similarity=0.089 Sum_probs=54.8
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC--CEE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cC
Q 006006 35 RVLVVDDDITCLRILEQMLR----RCL--YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EM 105 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~----~~g--y~V-~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~--~~ 105 (665)
.|||.|+|-.+.-.+..-+. ..+ ..+ .++.+.+|+++.++.. +|.|.+|-.-| +-++++.+ ..
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~g---aDyI~ld~~~~-----e~lk~~v~~~~~ 221 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEAG---ADIIMLDNMKP-----EEIKEAVQLLKG 221 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcC---CCEEEECCCCH-----HHHHHHHHHhcC
Confidence 57888887544433332222 222 223 5889999999987543 89999986444 33333321 12
Q ss_pred CccEE--ecCchHHHHHHHHcCCCeEEe
Q 006006 106 DLPVI--TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 106 ~IPVI--a~sd~e~a~kALe~GA~DYLl 131 (665)
.+|++ +--+.+.+.+..+.||+.+-.
T Consensus 222 ~ipi~AsGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 222 RVLLEASGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CCcEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 36776 345778888888999887644
No 404
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=24.31 E-value=1.8e+02 Score=30.41 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=30.1
Q ss_pred CCccEE---------ecCchHHHHHHHHcCCCeEEeCCCCHHHHHH
Q 006006 105 MDLPVI---------TDGRVSAVMRGIRHGACDYLIKPIREEELKN 141 (665)
Q Consensus 105 ~~IPVI---------a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~ 141 (665)
-.+||| .+.+..++..|-++||.+||.-.+.+||-..
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~ 139 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAET 139 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHH
Confidence 357777 3567788999999999999999888888653
No 405
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.27 E-value=3.6e+02 Score=29.02 Aligned_cols=89 Identities=7% Similarity=-0.018 Sum_probs=56.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC--CEE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc--C
Q 006006 35 RVLVVDDDITCLRILEQMLRR----CL--YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--M 105 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~----~g--y~V-~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~--~ 105 (665)
.|||=|.|-...-.+...+.. .+ ..+ .++.+.+++.+.+.. .+|.|.+|- =|.+.++++.+. .
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~---gaDyI~lD~-----~~~e~l~~~~~~~~~ 231 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA---GADIIMFDN-----RTPDEIREFVKLVPS 231 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECC-----CCHHHHHHHHHhcCC
Confidence 567777765554444444432 22 233 478999999888753 389999983 244556665432 3
Q ss_pred CccEE--ecCchHHHHHHHHcCCCeEEe
Q 006006 106 DLPVI--TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 106 ~IPVI--a~sd~e~a~kALe~GA~DYLl 131 (665)
++|+. +--+.+.+.+..+.||+..-+
T Consensus 232 ~i~i~AiGGIt~~ni~~~a~~Gvd~IAv 259 (277)
T PRK08072 232 AIVTEASGGITLENLPAYGGTGVDYISL 259 (277)
T ss_pred CceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 45644 455778888888999887543
No 406
>PRK05637 anthranilate synthase component II; Provisional
Probab=24.25 E-value=1.3e+02 Score=30.80 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=35.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIl 85 (665)
-||||||...-+...|..+|++.++.+..+..... ++.+.... ||.||+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~~~--~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILAAN--PDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHhcC--CCEEEE
Confidence 48999999988999999999998887776655322 23333333 888877
No 407
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=24.08 E-value=2.2e+02 Score=28.32 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=38.2
Q ss_pred HHHHHHHhcc-CCcc-EE-ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006006 95 FKLLEHIGLE-MDLP-VI-TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146 (665)
Q Consensus 95 lELLe~Ir~~-~~IP-VI-a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~V 146 (665)
-+.++++++. +..+ |. -..+.+.+.+|++.|++-..+--+++++++++++.+
T Consensus 67 ~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l 121 (169)
T PF01729_consen 67 EEAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNMSPEDLKEAVEEL 121 (169)
T ss_dssp HHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHH
Confidence 4566666543 3343 44 445678899999999999999999999999999877
No 408
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=23.90 E-value=2e+02 Score=30.98 Aligned_cols=81 Identities=23% Similarity=0.374 Sum_probs=54.7
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCC--------CCCCHHHHHHHHhccCCccEE----ecCchHHHHHHHHcCCCeEE
Q 006006 63 CSQAAVALDILRERKGCFDVVLSDVHM--------PDMDGFKLLEHIGLEMDLPVI----TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 63 AsngeEALelLre~k~~PDLVIlDI~M--------P~mDGlELLe~Ir~~~~IPVI----a~sd~e~a~kALe~GA~DYL 130 (665)
.++.++|.+.+++.. +|.+=+-+-- |..| ++++++|++..++|++ .....+..++|++.|+.-.=
T Consensus 152 ~T~peea~~Fv~~Tg--vD~LAvaiGt~HG~yk~~p~Ld-f~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiN 228 (282)
T TIGR01858 152 YTDPQEAKEFVEATG--VDSLAVAIGTAHGLYKKTPKLD-FDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVN 228 (282)
T ss_pred cCCHHHHHHHHHHHC--cCEEecccCccccCcCCCCccC-HHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEE
Confidence 567789999998876 8877766632 2333 7889999877789988 23356778899999965432
Q ss_pred eCCCCHHHHHHHHHHHHHHh
Q 006006 131 IKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 131 lKPv~~eEL~~aLq~Vlrk~ 150 (665)
. -.+|+.++.+.++..
T Consensus 229 i----~T~l~~a~~~~~~~~ 244 (282)
T TIGR01858 229 V----ATELKIAFSGAVKAY 244 (282)
T ss_pred e----CcHHHHHHHHHHHHH
Confidence 1 235555555555443
No 409
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=23.80 E-value=2.9e+02 Score=28.38 Aligned_cols=67 Identities=18% Similarity=0.292 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCC-CCH--HHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 64 SQAAVALDILRERKGCFDVVLSDVHMPD-MDG--FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 64 sngeEALelLre~k~~PDLVIlDI~MP~-mDG--lELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
-+..+.++.+.+.. .-.++++|+.--+ +.| ++++++++....+|+| .-.+.+...++.+.|+++.+.
T Consensus 147 ~~~~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 147 IDLEEFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEHHHHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cCHHHHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 35667777777654 3479999997654 333 5678888766689999 345777788888999988775
No 410
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=23.71 E-value=6.8e+02 Score=26.13 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=58.7
Q ss_pred HHHHHHhCC-CEEEEECCHHHHHHHHHHcC-CCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---ecCchHHHHHHHH
Q 006006 49 LEQMLRRCL-YNVTTCSQAAVALDILRERK-GCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIR 123 (665)
Q Consensus 49 Lk~lL~~~g-y~V~tAsngeEALelLre~k-~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe 123 (665)
+...+.... .-|....+.++|+.+.+..- ..++.| .|-+-.-...|.++.+++...--+| .--+.+.+.++..
T Consensus 6 ~~~~l~~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~I--EITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~ 83 (211)
T COG0800 6 ILSKLKAQPVVPVIRGDDVEEALPLAKALIEGGIPAI--EITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIA 83 (211)
T ss_pred HHHHHHHCCeeEEEEeCCHHHHHHHHHHHHHcCCCeE--EEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHH
Confidence 334444433 45678899999998776431 235544 4445555688999998765443445 3457888999999
Q ss_pred cCCCeEEeCCCCHHHHHHH
Q 006006 124 HGACDYLIKPIREEELKNI 142 (665)
Q Consensus 124 ~GA~DYLlKPv~~eEL~~a 142 (665)
.||.-.++--++.+-++.+
T Consensus 84 aGa~fiVsP~~~~ev~~~a 102 (211)
T COG0800 84 AGAQFIVSPGLNPEVAKAA 102 (211)
T ss_pred cCCCEEECCCCCHHHHHHH
Confidence 9986555544666555433
No 411
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=23.51 E-value=2e+02 Score=32.09 Aligned_cols=66 Identities=20% Similarity=0.164 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhcc-CCccEE--ecCchHHHHHHHHcCCCeEEeC
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVI--TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~-mDGlELLe~Ir~~-~~IPVI--a~sd~e~a~kALe~GA~DYLlK 132 (665)
+..+-.+.+.+.. .|++++|+---. ..-++.+++||+. ++++|| .-.+.+.+...++.||+....=
T Consensus 108 ~~~er~~~L~~ag--vD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 108 DDFERAEALVEAG--VDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp CHHHHHHHHHHTT---SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHHHcC--CCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEe
Confidence 3445555555444 899999974433 2346788888754 669999 4567888888999999887654
No 412
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=23.48 E-value=5.3e+02 Score=28.14 Aligned_cols=77 Identities=17% Similarity=0.265 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCe-EEeCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACD-YLIKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~D-YLlKPv~~eEL~ 140 (665)
+..+|+++++... .+++..+.==+|. +-++.+++|++...+||.. ..+.....+.++.|+.| +..||....=+.
T Consensus 200 ~~~~A~~~~~~l~-~~~~~~iEeP~~~-~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit 277 (365)
T cd03318 200 DESTAIRALPRLE-AAGVELIEQPVPR-ENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLR 277 (365)
T ss_pred CHHHHHHHHHHHH-hcCcceeeCCCCc-ccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHH
Confidence 4466777666543 2555555533332 2345566676667788872 23455677788887655 568887654444
Q ss_pred HHH
Q 006006 141 NIW 143 (665)
Q Consensus 141 ~aL 143 (665)
.++
T Consensus 278 ~~~ 280 (365)
T cd03318 278 RAQ 280 (365)
T ss_pred HHH
Confidence 333
No 413
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=23.46 E-value=2.3e+02 Score=29.10 Aligned_cols=66 Identities=12% Similarity=0.038 Sum_probs=46.5
Q ss_pred CCEEEEECCHHHHHHHHHHcCCCceEEEEeCCC---CCCCHHHHHHHHhccCCccEE-ecCchHHHHHHHHcCCC
Q 006006 57 LYNVTTCSQAAVALDILRERKGCFDVVLSDVHM---PDMDGFKLLEHIGLEMDLPVI-TDGRVSAVMRGIRHGAC 127 (665)
Q Consensus 57 gy~V~tAsngeEALelLre~k~~PDLVIlDI~M---P~mDGlELLe~Ir~~~~IPVI-a~sd~e~a~kALe~GA~ 127 (665)
++.|....+.+++.++++.. .|+|-+|--. | .+--+++++|++.. ..++ --++.+....|.++|++
T Consensus 45 ~~~V~ITPT~~ev~~l~~aG---adIIAlDaT~R~Rp-~~l~~li~~i~~~~-~l~MADist~ee~~~A~~~G~D 114 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEAG---ADIIALDATDRPRP-ETLEELIREIKEKY-QLVMADISTLEEAINAAELGFD 114 (192)
T ss_dssp TSS--BS-SHHHHHHHHHCT----SEEEEE-SSSS-S-S-HHHHHHHHHHCT-SEEEEE-SSHHHHHHHHHTT-S
T ss_pred CCCeEECCCHHHHHHHHHcC---CCEEEEecCCCCCC-cCHHHHHHHHHHhC-cEEeeecCCHHHHHHHHHcCCC
Confidence 35677777888998888754 7999999744 5 77888999998766 6666 45788999999999964
No 414
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=23.42 E-value=2.2e+02 Score=30.74 Aligned_cols=80 Identities=21% Similarity=0.402 Sum_probs=53.3
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCC--------CCCCHHHHHHHHhccCCccEE----ecCchHHHHHHHHcCCCeEE
Q 006006 63 CSQAAVALDILRERKGCFDVVLSDVHM--------PDMDGFKLLEHIGLEMDLPVI----TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 63 AsngeEALelLre~k~~PDLVIlDI~M--------P~mDGlELLe~Ir~~~~IPVI----a~sd~e~a~kALe~GA~DYL 130 (665)
.++.++|.+.+++.. +|.+=+-+-- |..| +++++.|++..++|++ .....+..++|++.|+.-.=
T Consensus 154 ~T~peeA~~Fv~~Tg--vD~LAvaiGt~HG~y~~~p~Ld-~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~KiN 230 (284)
T PRK12737 154 YTNPDAAAEFVERTG--IDSLAVAIGTAHGLYKGEPKLD-FERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVN 230 (284)
T ss_pred CCCHHHHHHHHHHhC--CCEEeeccCccccccCCCCcCC-HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEEE
Confidence 557799999999876 8977776622 2222 6789999877789988 23356678889999965432
Q ss_pred eCCCCHHHHHHHHHHHHHH
Q 006006 131 IKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 131 lKPv~~eEL~~aLq~Vlrk 149 (665)
+. .+|+.++.+.+++
T Consensus 231 ---i~-T~l~~a~~~~~~~ 245 (284)
T PRK12737 231 ---VA-TELKIAFSDAVKK 245 (284)
T ss_pred ---eC-cHHHHHHHHHHHH
Confidence 22 2455455544444
No 415
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=23.25 E-value=2.5e+02 Score=26.70 Aligned_cols=52 Identities=23% Similarity=0.262 Sum_probs=39.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI 87 (665)
.+.+|.++.+.. ..+.+...... ...+..+.+.+++++++...+ .|.++.|.
T Consensus 109 ~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~g~--~d~~i~~~ 160 (225)
T PF00497_consen 109 KGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEALLSGR--IDAFIVDE 160 (225)
T ss_dssp TTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHHHTTS--SSEEEEEH
T ss_pred cCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHHhcCC--eeeeeccc
Confidence 446888888855 44445554433 677788999999999999876 99999985
No 416
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=23.22 E-value=9e+02 Score=25.52 Aligned_cols=76 Identities=16% Similarity=0.259 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEecCchHHHHHHHHcCCCeEEeCCCCH------HH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIRE------EE 138 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~------eE 138 (665)
+.++..+.+.. .|++++=-. .+.-|+.+++.+. ..+|||+.+. ....+.++.|..+++.++-+. ++
T Consensus 270 ~~~~~~~~~~~----aDv~v~ps~-~e~~g~~~lEA~a--~G~PvI~s~~-~~~~e~i~~~~~G~~~~~~~~~~~~~~~~ 341 (388)
T TIGR02149 270 PKEELVELLSN----AEVFVCPSI-YEPLGIVNLEAMA--CGTPVVASAT-GGIPEVVVDGETGFLVPPDNSDADGFQAE 341 (388)
T ss_pred CHHHHHHHHHh----CCEEEeCCc-cCCCChHHHHHHH--cCCCEEEeCC-CCHHHHhhCCCceEEcCCCCCcccchHHH
Confidence 34455555532 577765322 2334666666663 4678885332 234566778889999999887 88
Q ss_pred HHHHHHHHHH
Q 006006 139 LKNIWQHVVR 148 (665)
Q Consensus 139 L~~aLq~Vlr 148 (665)
|.+++.+++.
T Consensus 342 l~~~i~~l~~ 351 (388)
T TIGR02149 342 LAKAINILLA 351 (388)
T ss_pred HHHHHHHHHh
Confidence 8888877754
No 417
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=23.14 E-value=3.1e+02 Score=30.39 Aligned_cols=38 Identities=11% Similarity=0.214 Sum_probs=29.8
Q ss_pred HHHHHHHhccCCccEE--ecCchHHHHHHHHcCCCeEEeC
Q 006006 95 FKLLEHIGLEMDLPVI--TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 95 lELLe~Ir~~~~IPVI--a~sd~e~a~kALe~GA~DYLlK 132 (665)
++.++.++....+||| .....+.+..+.++||+..++-
T Consensus 202 ~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vs 241 (344)
T cd02922 202 WDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLS 241 (344)
T ss_pred HHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEE
Confidence 5667778777788987 4467888899999999987743
No 418
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.05 E-value=8.3e+02 Score=29.49 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=42.7
Q ss_pred ceEEEEe-CCCCCCCHH-HHHHHHhcc-CCccEE-ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 80 FDVVLSD-VHMPDMDGF-KLLEHIGLE-MDLPVI-TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 80 PDLVIlD-I~MP~mDGl-ELLe~Ir~~-~~IPVI-a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
..|||+| +++-..+.. .|++.|.+- ..+.+| ...+...+...+..-+.-|-.+|++.+++...+++++.+
T Consensus 120 ~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~ 193 (624)
T PRK14959 120 YKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGR 193 (624)
T ss_pred ceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHH
Confidence 6789998 333222222 344444332 334444 455555555556655667889999999999888886654
No 419
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=23.04 E-value=2.1e+02 Score=32.47 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=37.5
Q ss_pred CccEEEEEeCCHHHH---HHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006006 32 AGLRVLVVDDDITCL---RILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (665)
Q Consensus 32 ~girVLIVDDD~~ir---e~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI 87 (665)
.+.+|.+|+-|+.-. +.|+.+-+..+..+..+.+..+....++... .+|+||+|.
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-~~DlVlIDt 307 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-DCDVILIDT 307 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-CCCEEEEeC
Confidence 468999999998432 2333333434666777777777777776554 489999996
No 420
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=23.04 E-value=4.6e+02 Score=25.92 Aligned_cols=67 Identities=7% Similarity=-0.029 Sum_probs=49.3
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE--ecCchHHHHHHHHcCCCeEEeC
Q 006006 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI--TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 61 ~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI--a~sd~e~a~kALe~GA~DYLlK 132 (665)
..+.+.+|+.+.++. .+|.|-++- .+.. |.++++.++.. +.+|++ +.-+.+.+.+.++.||+..-.-
T Consensus 102 ~gv~t~~e~~~A~~~---Gad~i~~~p-~~~~-g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 102 PGVATPTEIMQALEL---GADIVKLFP-AEAV-GPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred CCcCCHHHHHHHHHC---CCCEEEEcC-Cccc-CHHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCCCEEEEEc
Confidence 356788999888753 389998863 3333 89999998754 468888 3457788889999998776554
No 421
>PF07638 Sigma70_ECF: ECF sigma factor
Probab=22.99 E-value=1.1e+02 Score=30.24 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=24.8
Q ss_pred HHHHHHhCCCCCCHHHHHhhhcccchhHHH
Q 006006 245 KRILELMNVPGLTRENVASHLQEINLQKFR 274 (665)
Q Consensus 245 KkILeLL~~~~LtI~EVAs~VGYsD~qYF~ 274 (665)
.++++|+...|+|.+|||..+|.+....-+
T Consensus 141 ~~~v~l~~~~Gls~~EIA~~lgiS~~tV~r 170 (185)
T PF07638_consen 141 RRVVELRFFEGLSVEEIAERLGISERTVRR 170 (185)
T ss_pred HHHHHHHHHCCCCHHHHHHHHCcCHHHHHH
Confidence 567888888999999999999998665443
No 422
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=22.90 E-value=7.1e+02 Score=28.15 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=37.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-EE-------------------EEECCHHHHHHHHHHcCCCceEEEEeCCCCC
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLY-NV-------------------TTCSQAAVALDILRERKGCFDVVLSDVHMPD 91 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy-~V-------------------~tAsngeEALelLre~k~~PDLVIlDI~MP~ 91 (665)
..||||||..---.-....++.+.-.+ .+ ....+.++.++.+++.. +|+|+....-|-
T Consensus 3 ~~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~~~--iD~Vv~g~E~~l 80 (426)
T PRK13789 3 VKLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKSNP--FDLIVVGPEDPL 80 (426)
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhccccccccCcCcCCHHHHHHHHHHcC--CCEEEECCchHH
Confidence 358999999876555444444443111 11 11246667777777766 999998765554
Q ss_pred CCHH
Q 006006 92 MDGF 95 (665)
Q Consensus 92 mDGl 95 (665)
..|+
T Consensus 81 ~~gl 84 (426)
T PRK13789 81 VAGF 84 (426)
T ss_pred HHHH
Confidence 4444
No 423
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=22.85 E-value=2.4e+02 Score=31.43 Aligned_cols=51 Identities=14% Similarity=-0.043 Sum_probs=38.4
Q ss_pred CceEEEEeCCCCCC-CHHHHHHHHhcc-CCccEE--ecCchHHHHHHHHcCCCeE
Q 006006 79 CFDVVLSDVHMPDM-DGFKLLEHIGLE-MDLPVI--TDGRVSAVMRGIRHGACDY 129 (665)
Q Consensus 79 ~PDLVIlDI~MP~m-DGlELLe~Ir~~-~~IPVI--a~sd~e~a~kALe~GA~DY 129 (665)
.+|+|++|+-=... .-++++++||+. ++++|| .-...+.+...+.+||+..
T Consensus 122 g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 122 ALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIV 176 (346)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEE
Confidence 48999999854432 346788888754 678888 4567778888899999964
No 424
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.85 E-value=2.8e+02 Score=30.16 Aligned_cols=88 Identities=11% Similarity=0.053 Sum_probs=51.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC--CEE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCc
Q 006006 35 RVLVVDDDITCLRILEQMLRR----CL--YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~----~g--y~V-~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~I 107 (665)
.|||=|.|-...-.+...++. .. ..| ..+.+.+|+.+.++.. +|+|++|= |.-.+--++++.++. .+
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~ag---aDiImLDn-mspe~l~~av~~~~~--~~ 242 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAG---ADIIMLDN-MSLEQIEQAITLIAG--RS 242 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHcC---CCEEEECC-CCHHHHHHHHHHhcC--ce
Confidence 577777775555445454443 23 223 4789999999999653 89999994 433233333333332 23
Q ss_pred cEE--ecCchHHHHHHHHcCCCe
Q 006006 108 PVI--TDGRVSAVMRGIRHGACD 128 (665)
Q Consensus 108 PVI--a~sd~e~a~kALe~GA~D 128 (665)
.+. +.-+.+.+.+-...|+|-
T Consensus 243 ~leaSGGI~~~ni~~yA~tGVD~ 265 (290)
T PRK06559 243 RIECSGNIDMTTISRFRGLAIDY 265 (290)
T ss_pred EEEEECCCCHHHHHHHHhcCCCE
Confidence 222 344666676666778764
No 425
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.79 E-value=4.6e+02 Score=27.33 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=54.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEEC----CHHHHHHHHHHc--CCCceEEEE------------------e-CCC
Q 006006 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCS----QAAVALDILRER--KGCFDVVLS------------------D-VHM 89 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~~gy~V~tAs----ngeEALelLre~--k~~PDLVIl------------------D-I~M 89 (665)
-|+-.+|........+.+++. |+.+.+++ ++.++++.+++. ...||++|= + +..
T Consensus 19 ~Vvr~~~~~~a~~~~~al~~g-Gi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVs 97 (222)
T PRK07114 19 PVFYHADVEVAKKVIKACYDG-GARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVT 97 (222)
T ss_pred EEEEcCCHHHHHHHHHHHHHC-CCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEEC
Confidence 445555555555555555554 66554332 466666666421 123677651 1 123
Q ss_pred CCCCHHHHHHHHhccCCccEE-ecCchHHHHHHHHcCCCeEEeCC
Q 006006 90 PDMDGFKLLEHIGLEMDLPVI-TDGRVSAVMRGIRHGACDYLIKP 133 (665)
Q Consensus 90 P~mDGlELLe~Ir~~~~IPVI-a~sd~e~a~kALe~GA~DYLlKP 133 (665)
|+.|- ++++..+ ...+|+| +......+.+|+++|++-.=+=|
T Consensus 98 P~~~~-~v~~~~~-~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFP 140 (222)
T PRK07114 98 PLFNP-DIAKVCN-RRKVPYSPGCGSLSEIGYAEELGCEIVKLFP 140 (222)
T ss_pred CCCCH-HHHHHHH-HcCCCEeCCCCCHHHHHHHHHCCCCEEEECc
Confidence 44442 4444433 3567888 66778889999999997644445
No 426
>PRK15044 transcriptional regulator SirC; Provisional
Probab=22.76 E-value=79 Score=34.39 Aligned_cols=31 Identities=19% Similarity=0.117 Sum_probs=26.1
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
...++++||.++|.+ ..||.+.||+. |+++.
T Consensus 207 ~~~SLeeLA~~lgmS-~~tL~R~Fk~e-g~T~~ 237 (295)
T PRK15044 207 RKWSQAEVAGKLFMS-VSSLKRKLAAE-EVSFS 237 (295)
T ss_pred cCCCHHHHHHHhCCC-HHHHHHHHHHc-CCCHH
Confidence 459999999999865 58999999986 77775
No 427
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=22.63 E-value=1.3e+02 Score=31.48 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=40.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC--C---CEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCC
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRRC--L---YNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~~--g---y~V~-tAsngeEALelLre~k~~PDLVIlDI~MP~mD 93 (665)
+...+|-+||=|+.+.+..++.+... . -++. ...++...++...+. .+|+||+|.--|...
T Consensus 98 ~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~--~yDvIi~D~~dp~~~ 164 (246)
T PF01564_consen 98 PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEE--KYDVIIVDLTDPDGP 164 (246)
T ss_dssp TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST---EEEEEEESSSTTSC
T ss_pred CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCC--cccEEEEeCCCCCCC
Confidence 33468999999999999999987642 1 1232 566666666544332 499999999776543
No 428
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=22.54 E-value=4.4e+02 Score=34.12 Aligned_cols=100 Identities=14% Similarity=0.195 Sum_probs=67.6
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCC-CCCH-HHHHHHHhc
Q 006006 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMP-DMDG-FKLLEHIGL 103 (665)
Q Consensus 33 girVLIV----DDD~~ire~Lk~lL~~~gy~V~tAs---ngeEALelLre~k~~PDLVIlDI~MP-~mDG-lELLe~Ir~ 103 (665)
.-+|++. |-|.+=...+.-+|+..||+|.-.. ..++.++.+++++ ||+|-+-..|. .+.. .++++.+++
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~--~diVgLS~Lmt~t~~~m~~vi~~L~~ 809 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHN--ADVIGLSGLITPSLDEMKEVAEEMNR 809 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcccccHHHHHHHHHHHHh
Confidence 3578887 7778778888888888899997543 5688888888877 99999987774 3443 345677754
Q ss_pred c-CCccEE---ecCchHHHHH---HHHcCCCeEEeCCC
Q 006006 104 E-MDLPVI---TDGRVSAVMR---GIRHGACDYLIKPI 134 (665)
Q Consensus 104 ~-~~IPVI---a~sd~e~a~k---ALe~GA~DYLlKPv 134 (665)
. ..++|+ +.-+.+++.. ....||+.|-.-..
T Consensus 810 ~g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA~ 847 (1178)
T TIGR02082 810 RGITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDAS 847 (1178)
T ss_pred cCCCceEEEeccccchhHHHhhhhhhccCCeEEecCHH
Confidence 4 467877 2233333322 12338888876443
No 429
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=22.53 E-value=7e+02 Score=24.44 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=35.6
Q ss_pred CHHHHHHHHhccCCccE---E-ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHH
Q 006006 93 DGFKLLEHIGLEMDLPV---I-TDGRVSAVMRGIRHGACDYLIKPIREEELKNIW 143 (665)
Q Consensus 93 DGlELLe~Ir~~~~IPV---I-a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aL 143 (665)
-|++.+++|++....|+ + .++..+++..+.+.||+..+.-....++....+
T Consensus 43 ~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~ 97 (210)
T TIGR01163 43 FGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLL 97 (210)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHH
Confidence 57889999986555564 2 566667788888999998777554444554444
No 430
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=22.50 E-value=7.2e+02 Score=27.84 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=38.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCccEEecCchHHHHHHHHcC------CCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITDGRVSAVMRGIRHG------ACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~sd~e~a~kALe~G------A~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
.|++++=-. -+--|+..++.+. ..+|+|+.... ...+.+..| ..+++..|.+.++|.+++.+++..
T Consensus 366 aDv~l~pS~-~E~~gl~~lEAma--~G~pvI~s~~g-g~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~ 437 (473)
T TIGR02095 366 ADFILMPSR-FEPCGLTQLYAMR--YGTVPIVRRTG-GLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRL 437 (473)
T ss_pred CCEEEeCCC-cCCcHHHHHHHHH--CCCCeEEccCC-CccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHH
Confidence 466655322 2233555555553 34566632211 122233344 789999999999999999988763
No 431
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=22.44 E-value=2.4e+02 Score=30.47 Aligned_cols=80 Identities=18% Similarity=0.312 Sum_probs=53.4
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCC--------CCCCHHHHHHHHhccCCccEE----ecCchHHHHHHHHcCCCeEE
Q 006006 63 CSQAAVALDILRERKGCFDVVLSDVHM--------PDMDGFKLLEHIGLEMDLPVI----TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 63 AsngeEALelLre~k~~PDLVIlDI~M--------P~mDGlELLe~Ir~~~~IPVI----a~sd~e~a~kALe~GA~DYL 130 (665)
.++.++|.+.+++.. +|.+=+-+-- |..| +++++.|++..++|++ .....+..++|++.|+.-.=
T Consensus 154 ~T~pe~a~~Fv~~Tg--vD~LAvaiGt~HG~y~~~p~Ld-~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiN 230 (284)
T PRK12857 154 MTDPEEARRFVEETG--VDALAIAIGTAHGPYKGEPKLD-FDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGVRKVN 230 (284)
T ss_pred cCCHHHHHHHHHHHC--CCEEeeccCccccccCCCCcCC-HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEE
Confidence 557889999998776 8877776622 3333 7889999877789988 23355678889999965442
Q ss_pred eCCCCHHHHHHHHHHHHHH
Q 006006 131 IKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 131 lKPv~~eEL~~aLq~Vlrk 149 (665)
+. .+|+.++.+.++.
T Consensus 231 ---i~-T~~~~a~~~~~~~ 245 (284)
T PRK12857 231 ---ID-TNIREAFVARLRE 245 (284)
T ss_pred ---eC-cHHHHHHHHHHHH
Confidence 22 3455555544443
No 432
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.38 E-value=4.2e+02 Score=28.64 Aligned_cols=101 Identities=22% Similarity=0.236 Sum_probs=56.9
Q ss_pred EEEEE--eCCHHHHHH---HHHHHHhCCCEEEEECCHHHHHH-------HHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006006 35 RVLVV--DDDITCLRI---LEQMLRRCLYNVTTCSQAAVALD-------ILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (665)
Q Consensus 35 rVLIV--DDD~~ire~---Lk~lL~~~gy~V~tAsngeEALe-------lLre~k~~PDLVIlDI~MP~mDGlELLe~Ir 102 (665)
+|+|+ -+.+...+. +.++|+..++.+.........+. -.......+|+||+ -+.|| .+++..+
T Consensus 7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----lGGDG-T~L~aa~ 81 (292)
T PRK03378 7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV----VGGDG-NMLGAAR 81 (292)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE----ECCcH-HHHHHHH
Confidence 57777 333444444 44444455777765443222221 00111123687776 36677 3445544
Q ss_pred c--cCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 103 L--EMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 103 ~--~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
. ...+||++- ..|=.+||. .++.+++..++++++.+..
T Consensus 82 ~~~~~~~Pilgi----------n~G~lGFl~-~~~~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 82 VLARYDIKVIGI----------NRGNLGFLT-DLDPDNALQQLSDVLEGHY 121 (292)
T ss_pred HhcCCCCeEEEE----------ECCCCCccc-ccCHHHHHHHHHHHHcCCc
Confidence 2 246888832 135567877 6788999999999887654
No 433
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=22.31 E-value=8.5e+02 Score=24.90 Aligned_cols=53 Identities=25% Similarity=0.401 Sum_probs=37.5
Q ss_pred HHHHHHHHhccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 94 GFKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 94 GlELLe~Ir~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
|..+++.+. ..+|+|+.+. ....+.++.+..+++.++-+.++|.+.+..++..
T Consensus 275 ~~~~~Ea~a--~G~Pvi~~~~-~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 275 PVVLMEAMA--MGLPVISTDV-SGIPELVEDGETGLLVPPGDPEALADAIERLLDD 327 (355)
T ss_pred cHHHHHHHH--cCCCEEecCC-CCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 556666653 4678884332 2234566778889999999999999999887653
No 434
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=22.25 E-value=6.2e+02 Score=27.55 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=44.4
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCEE-EEECCHHHHHHHHHHcCCCceEEEEeCCCC
Q 006006 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMP 90 (665)
Q Consensus 28 d~fP~girVLIVDDD~~ire~Lk~lL~~~gy~V-~tAsngeEALelLre~k~~PDLVIlDI~MP 90 (665)
...+...+|+-+|-|+...+..++.|.. .-.+ ....+..+....+.+.-..+|.|++|+...
T Consensus 39 ~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 39 ERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKEVLAEGLGKVDGILLDLGVS 101 (296)
T ss_pred HhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHHHHHcCCCccCEEEECCCcc
Confidence 3456567999999999999999888765 3233 356777777776654211499999998654
No 435
>PRK14974 cell division protein FtsY; Provisional
Probab=22.25 E-value=8.9e+02 Score=26.76 Aligned_cols=54 Identities=26% Similarity=0.325 Sum_probs=32.6
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCEEEEECCH-------HHHHHHHHHcCCCceEEEEeC
Q 006006 32 AGLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCSQA-------AVALDILRERKGCFDVVLSDV 87 (665)
Q Consensus 32 ~girVLIVDDD~---~ire~Lk~lL~~~gy~V~tAsng-------eEALelLre~k~~PDLVIlDI 87 (665)
.+.+|++++-|. -..+.|+.+....+..+.....+ .++++.++... .|+||+|-
T Consensus 167 ~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~--~DvVLIDT 230 (336)
T PRK14974 167 NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARG--IDVVLIDT 230 (336)
T ss_pred cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCC--CCEEEEEC
Confidence 457999998884 33344555555556555433221 25555555443 89999997
No 436
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.13 E-value=3.5e+02 Score=31.33 Aligned_cols=97 Identities=22% Similarity=0.172 Sum_probs=58.4
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHHcCCCceEEEEeCCC------CC-----CC
Q 006006 32 AGLRVLVVDDD----ITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM------PD-----MD 93 (665)
Q Consensus 32 ~girVLIVDDD----~~ire~Lk~lL~~~-gy~V~--tAsngeEALelLre~k~~PDLVIlDI~M------P~-----mD 93 (665)
.+.+++++|-- ....+.++++=+.+ ...|. -+.+.++|.++++.. .|.|-+-+-- .. .-
T Consensus 238 aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aG---ad~v~vgig~gsictt~~~~~~~~p 314 (479)
T PRK07807 238 AGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAG---ADIVKVGVGPGAMCTTRMMTGVGRP 314 (479)
T ss_pred hCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcC---CCEEEECccCCcccccccccCCchh
Confidence 56788888743 33333333333332 22332 467888998888743 7988754432 01 11
Q ss_pred HHHHHHHHhc---cCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 94 GFKLLEHIGL---EMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 94 GlELLe~Ir~---~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
-++++.++.+ ...+||| .......+.+|+.+||+....
T Consensus 315 ~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~ 358 (479)
T PRK07807 315 QFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMI 358 (479)
T ss_pred HHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeec
Confidence 2444444432 4579999 456778889999999988765
No 437
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=22.13 E-value=2.2e+02 Score=25.87 Aligned_cols=41 Identities=34% Similarity=0.432 Sum_probs=21.5
Q ss_pred HHHHHHHHH-cCCCceEEEE--eCCC---CCCCHHHHHHHHhccCCccEE
Q 006006 67 AVALDILRE-RKGCFDVVLS--DVHM---PDMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 67 eEALelLre-~k~~PDLVIl--DI~M---P~mDGlELLe~Ir~~~~IPVI 110 (665)
.++.+++++ .+ +|+||. |-.. ...||+.+.+.. ....+|++
T Consensus 57 ~~i~~~i~~~g~--idlVIn~~~~~~~~~~~~dg~~iRR~A-~~~~Ip~~ 103 (112)
T cd00532 57 PTVDAAIAEKGK--FDVVINLRDPRRDRCTDEDGTALLRLA-RLYKIPVT 103 (112)
T ss_pred cHHHHHHhCCCC--EEEEEEcCCCCcccccCCChHHHHHHH-HHcCCCEE
Confidence 346666665 44 777766 3222 344566443332 23467766
No 438
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=22.04 E-value=3.7e+02 Score=30.91 Aligned_cols=63 Identities=19% Similarity=0.212 Sum_probs=42.5
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCccEE--ecCchHHHHHHHHcCCC
Q 006006 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVI--TDGRVSAVMRGIRHGAC 127 (665)
Q Consensus 62 tAsngeEALelLre~k~~PDLVIlDI~MP~-------mDGlELLe~Ir~~~~IPVI--a~sd~e~a~kALe~GA~ 127 (665)
.+.+.+|+....+. .+|.|.+---.|. --|++.++.+....++||+ +.-+.+.+.+.++.|++
T Consensus 396 S~h~~~e~~~a~~~---gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI~~~~~~~~~~~G~~ 467 (502)
T PLN02898 396 SCKTPEQAEQAWKD---GADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGISASNAASVMESGAP 467 (502)
T ss_pred eCCCHHHHHHHhhc---CCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHcCCC
Confidence 56677776555432 3898875322221 1278888888766789998 44567788889999988
No 439
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=22.00 E-value=1.9e+02 Score=30.84 Aligned_cols=96 Identities=18% Similarity=0.239 Sum_probs=47.8
Q ss_pred HHHHHHhcCCCCCcceeeeeccCCCCCC------CccEEEEEeCCH------------HHHHHHHHHHHhCCCEEEEECC
Q 006006 4 LQRIVQSSGGSGYGSSRAADVAVPDQFP------AGLRVLVVDDDI------------TCLRILEQMLRRCLYNVTTCSQ 65 (665)
Q Consensus 4 ~~~~V~~mgGsg~Gs~f~~~~~~~d~fP------~girVLIVDDD~------------~ire~Lk~lL~~~gy~V~tAsn 65 (665)
.|+..+..+|.-.|+.|.....+.+-+. ..+++|++.--. ..|+.|++++.. .+++..+ +
T Consensus 63 ~~k~~~a~~~~~~~~~fk~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~-~~e~Viv-D 140 (255)
T COG3640 63 LKKRTGAEPGGPPGEMFKENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILN-RYEVVIV-D 140 (255)
T ss_pred HHHHhccCCCCCcccccccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcc-cCcEEEE-e
Confidence 4555555566667777876665544331 347888876544 344444444433 2333222 2
Q ss_pred HHHHHHHHHH-cCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006006 66 AAVALDILRE-RKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (665)
Q Consensus 66 geEALelLre-~k~~PDLVIlDI~MP~mDGlELLe~Ir 102 (665)
.+.+++-+-+ .....|++|+=+ -|...++.+.++|+
T Consensus 141 tEAGiEHfgRg~~~~vD~vivVv-DpS~~sl~taeri~ 177 (255)
T COG3640 141 TEAGIEHFGRGTIEGVDLVIVVV-DPSYKSLRTAERIK 177 (255)
T ss_pred cccchhhhccccccCCCEEEEEe-CCcHHHHHHHHHHH
Confidence 2233333321 112356655533 35556666666663
No 440
>PLN02275 transferase, transferring glycosyl groups
Probab=21.95 E-value=8.4e+02 Score=26.38 Aligned_cols=104 Identities=17% Similarity=0.129 Sum_probs=64.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCE-EEEE---CCHHHHHHHHHHcCCCceEEEEeC-CC-CCCCHHHHHHHHhccCC
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VTTC---SQAAVALDILRERKGCFDVVLSDV-HM-PDMDGFKLLEHIGLEMD 106 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~-V~tA---sngeEALelLre~k~~PDLVIlDI-~M-P~mDGlELLe~Ir~~~~ 106 (665)
.++.+||.|-+. ++.+++.++..+.. +... -..++.-+.+.. .|+.++=. .. ...=+..+++.+. ..
T Consensus 261 ~i~l~ivG~G~~-~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~----aDv~v~~~~s~~~e~~p~~llEAmA--~G 333 (371)
T PLN02275 261 RLLFIITGKGPQ-KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGS----ADLGVSLHTSSSGLDLPMKVVDMFG--CG 333 (371)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHh----CCEEEEeccccccccccHHHHHHHH--CC
Confidence 589999998764 56777777765432 3332 234555555543 58877410 01 0112456666653 56
Q ss_pred ccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006006 107 LPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146 (665)
Q Consensus 107 IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~V 146 (665)
+|||+... ....+.++.|.++|+.. +.++|.+++.++
T Consensus 334 ~PVVa~~~-gg~~eiv~~g~~G~lv~--~~~~la~~i~~l 370 (371)
T PLN02275 334 LPVCAVSY-SCIGELVKDGKNGLLFS--SSSELADQLLEL 370 (371)
T ss_pred CCEEEecC-CChHHHccCCCCeEEEC--CHHHHHHHHHHh
Confidence 89995432 23556778899999985 588888777654
No 441
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=21.94 E-value=4.4e+02 Score=28.18 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=27.6
Q ss_pred HHHHHHHhccC--CccEE---ecCchHHHHHHHHcCCCeEE
Q 006006 95 FKLLEHIGLEM--DLPVI---TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 95 lELLe~Ir~~~--~IPVI---a~sd~e~a~kALe~GA~DYL 130 (665)
++.+.++++.. ++||| .-.+.+.+.+.+.+||+...
T Consensus 239 l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~ 279 (299)
T cd02940 239 LRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred HHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChhe
Confidence 67788887654 89999 45677888889999997643
No 442
>PRK10742 putative methyltransferase; Provisional
Probab=21.94 E-value=4e+02 Score=28.43 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=41.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC------C----CEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCC
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRC------L----YNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDM 92 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~------g----y~V~-tAsngeEALelLre~k~~PDLVIlDI~MP~m 92 (665)
.|.+|..||.++.+...|+.-|+.. + -++. ...+..+.|+.. ...||+|.+|=+-|.-
T Consensus 109 ~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~---~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 109 VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI---TPRPQVVYLDPMFPHK 177 (250)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC---CCCCcEEEECCCCCCC
Confidence 4678999999999999999998873 1 1232 345556666543 3349999999888763
No 443
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=21.85 E-value=1.6e+02 Score=30.93 Aligned_cols=53 Identities=25% Similarity=0.283 Sum_probs=29.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--------CCEEEEEC---CHHHHHHHHHHcCCCceEEEEeCC
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRC--------LYNVTTCS---QAAVALDILRERKGCFDVVLSDVH 88 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~--------gy~V~tAs---ngeEALelLre~k~~PDLVIlDI~ 88 (665)
.|-+|.|+|-||.- -|.++-+.. ...|..+. ..+++++..+... +|+||+|..
T Consensus 29 ~G~~V~lIDaDpn~--pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~--~d~VlvDle 92 (231)
T PF07015_consen 29 RGARVALIDADPNQ--PLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASG--FDFVLVDLE 92 (231)
T ss_pred CCCeEEEEeCCCCC--cHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcC--CCEEEEeCC
Confidence 57899999998741 122221111 12344333 3344544444333 899999974
No 444
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=21.83 E-value=2.2e+02 Score=33.00 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=38.6
Q ss_pred CceEEEEeCCCCC-CCHHHHHHHHhcc-CCccEEe--cCchHHHHHHHHcCCCeEE
Q 006006 79 CFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVIT--DGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 79 ~PDLVIlDI~MP~-mDGlELLe~Ir~~-~~IPVIa--~sd~e~a~kALe~GA~DYL 130 (665)
..|+|.+|..=.. ...++++++|++. +.++|++ -.+.+.+..++++||+...
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEE
Confidence 3899999983111 2236888999765 5788883 5677889999999999774
No 445
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=21.73 E-value=1.1e+02 Score=32.83 Aligned_cols=32 Identities=13% Similarity=0.071 Sum_probs=27.9
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
...+++++|.++|.+ ..+|.+.||+. |+++..
T Consensus 196 ~~~sl~~lA~~~gmS-~stl~R~Fk~~-g~s~~~ 227 (291)
T PRK15186 196 RKWALKDISDSLYMS-CSTLKRKLKQE-NTSFSE 227 (291)
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHc-CCCHHH
Confidence 578999999999887 78999999996 888764
No 446
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=21.64 E-value=3.4e+02 Score=27.13 Aligned_cols=76 Identities=12% Similarity=0.117 Sum_probs=50.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC--CCEEEEE----C--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRRC--LYNVTTC----S--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~~--gy~V~tA----s--ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir 102 (665)
..+.+|.++-..+.+.+.+.+.|... +..+... . +.++.++.+.+.. ||||++-+-+|...- ++.+.+
T Consensus 46 ~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~--~dil~VglG~PkQE~--~~~~~~ 121 (177)
T TIGR00696 46 KEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSG--AGIVFVGLGCPKQEI--WMRNHR 121 (177)
T ss_pred HcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcC--CCEEEEEcCCcHhHH--HHHHhH
Confidence 35689999999999999999998875 3444322 1 1234466676665 999999999998763 344444
Q ss_pred ccCCccEE
Q 006006 103 LEMDLPVI 110 (665)
Q Consensus 103 ~~~~IPVI 110 (665)
.....+++
T Consensus 122 ~~~~~~v~ 129 (177)
T TIGR00696 122 HLKPDAVM 129 (177)
T ss_pred HhCCCcEE
Confidence 33333443
No 447
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=21.63 E-value=2.4e+02 Score=29.16 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=42.6
Q ss_pred cEEEEEeCCH------HHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 006006 34 LRVLVVDDDI------TCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (665)
Q Consensus 34 irVLIVDDD~------~ire~Lk~lL~~~gy~V~tAs-ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~ 106 (665)
||||++-... .....+...|.+.|++|..+. +.....+.+...+ ||+|.+-......-.+.++..+. ..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~~--~diih~~~~~~~~~~~~~~~~~~--~~ 76 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEIIN--ADIVHLHWIHGGFLSIEDLSKLL--DR 76 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhccc--CCEEEEEccccCccCHHHHHHHH--cC
Confidence 5778776553 455566677777788876443 3334455555555 99998865443333344444442 35
Q ss_pred ccEE
Q 006006 107 LPVI 110 (665)
Q Consensus 107 IPVI 110 (665)
+|+|
T Consensus 77 ~~~v 80 (365)
T cd03825 77 KPVV 80 (365)
T ss_pred CCEE
Confidence 6666
No 448
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.62 E-value=3.6e+02 Score=31.77 Aligned_cols=57 Identities=21% Similarity=0.426 Sum_probs=38.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhc--cCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhh
Q 006006 80 FDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 152 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlELLe~Ir~--~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~ 152 (665)
+|+||+ -+.|| .+++..+. ...+||++ +..|=.+||. .++.+++.+.+++++++...
T Consensus 349 ~dlvi~----lGGDG-T~L~aa~~~~~~~~PilG----------in~G~lGFL~-~~~~~~~~~~l~~~~~g~~~ 407 (569)
T PRK14076 349 ISHIIS----IGGDG-TVLRASKLVNGEEIPIIC----------INMGTVGFLT-EFSKEEIFKAIDSIISGEYE 407 (569)
T ss_pred CCEEEE----ECCcH-HHHHHHHHhcCCCCCEEE----------EcCCCCCcCc-ccCHHHHHHHHHHHHcCCce
Confidence 566555 35677 34454442 24678873 2346678888 78999999999999877643
No 449
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.61 E-value=3.3e+02 Score=28.16 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~-mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
+..++++.+++.. -.+|++|+.--+ +.|++ +..+...++|+| .-.+.+...++.+.|+++.+.
T Consensus 144 ~~~~~~~~~~~~~--~~ii~t~i~~dGt~~G~d--~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 144 KVEDAYEMLKNYV--NRFIYTSIERDGTLTGIE--EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CHHHHHHHHHHHh--CEEEEEeccchhcccCHH--HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 3456666666553 479999997766 47777 222222578999 456777777888889988665
No 450
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=21.48 E-value=7.2e+02 Score=26.80 Aligned_cols=98 Identities=15% Similarity=0.067 Sum_probs=62.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHHcCCCceEEEE-----eCCCCCC-CHHHHHHHHhccC
Q 006006 35 RVLVVDDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLS-----DVHMPDM-DGFKLLEHIGLEM 105 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~~gy~V~---tAsngeEALelLre~k~~PDLVIl-----DI~MP~m-DGlELLe~Ir~~~ 105 (665)
-+||+|=-++....+....++.+.... .-++..+-++.+.+....+=.++. ..+.+.. +-.++++++|+..
T Consensus 125 GlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~ 204 (265)
T COG0159 125 GLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT 204 (265)
T ss_pred EEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc
Confidence 356666666666667777776654432 234455667766665422222221 1222211 2356788888888
Q ss_pred CccEE---ecCchHHHHHHHHcCCCeEEeCC
Q 006006 106 DLPVI---TDGRVSAVMRGIRHGACDYLIKP 133 (665)
Q Consensus 106 ~IPVI---a~sd~e~a~kALe~GA~DYLlKP 133 (665)
++||+ +-++.+.+.+..+. |++.+.-.
T Consensus 205 ~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGS 234 (265)
T COG0159 205 DVPVLVGFGISSPEQAAQVAEA-ADGVIVGS 234 (265)
T ss_pred CCCeEEecCcCCHHHHHHHHHh-CCeEEEcH
Confidence 99988 56789999999999 99999976
No 451
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=21.46 E-value=1.8e+02 Score=29.17 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=35.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIl 85 (665)
|||+|+|-.--....+.+.|++.++.+....+..+ +. .+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~~----~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----IL----DADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----Hc----cCCEEEE
Confidence 68999999988889999999999998887765422 21 2898887
No 452
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=21.40 E-value=2.5e+02 Score=27.59 Aligned_cols=80 Identities=11% Similarity=0.098 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCccEEe---cCch--HHHHHHHHcCCCeEEeCCCC
Q 006006 64 SQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVIT---DGRV--SAVMRGIRHGACDYLIKPIR 135 (665)
Q Consensus 64 sngeEALelLre~k~~PDLVIlDI~MP~--mDGlELLe~Ir~~-~~IPVIa---~sd~--e~a~kALe~GA~DYLlKPv~ 135 (665)
.+.++++++++...+. +-++.+.+|- -.|++.++.+++. +++|++. ..+. ..+..+.++||+..+.-...
T Consensus 10 ~~~~~~~~~~~~l~~~--i~~ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~ 87 (202)
T cd04726 10 LDLEEALELAKKVPDG--VDIIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAA 87 (202)
T ss_pred CCHHHHHHHHHHhhhc--CCEEEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeC
Confidence 3556666666655422 3334554332 3578888888764 5777772 1222 23567889999877754332
Q ss_pred -HHHHHHHHHH
Q 006006 136 -EEELKNIWQH 145 (665)
Q Consensus 136 -~eEL~~aLq~ 145 (665)
.+.+.+.++.
T Consensus 88 ~~~~~~~~i~~ 98 (202)
T cd04726 88 PLSTIKKAVKA 98 (202)
T ss_pred CHHHHHHHHHH
Confidence 2334444443
No 453
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.38 E-value=4.9e+02 Score=28.20 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=39.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhc--cCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 80 FDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlELLe~Ir~--~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
+|+||+ -+.|| .+++..+. ...+||++- ..|-.+||. .++.+++...+++++++..
T Consensus 69 ~D~vi~----lGGDG-T~L~aa~~~~~~~~PilGI----------N~G~lGFL~-~~~~~~~~~~l~~i~~g~~ 126 (296)
T PRK04539 69 CDLVAV----LGGDG-TFLSVAREIAPRAVPIIGI----------NQGHLGFLT-QIPREYMTDKLLPVLEGKY 126 (296)
T ss_pred CCEEEE----ECCcH-HHHHHHHHhcccCCCEEEE----------ecCCCeEee-ccCHHHHHHHHHHHHcCCc
Confidence 677776 36687 34555442 347898832 246688998 4889999999999887653
No 454
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=21.30 E-value=3.9e+02 Score=29.46 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=47.8
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCC-CCC--------CCHHHHHHHHhccCC-ccEE---ecCchHHHHHHHHcCC
Q 006006 60 VTTCSQAAVALDILRERKGCFDVVLSDVH-MPD--------MDGFKLLEHIGLEMD-LPVI---TDGRVSAVMRGIRHGA 126 (665)
Q Consensus 60 V~tAsngeEALelLre~k~~PDLVIlDI~-MP~--------mDGlELLe~Ir~~~~-IPVI---a~sd~e~a~kALe~GA 126 (665)
+..+.+..+|....+. ..|.||..=. =.+ .+.+.|+.++....+ +||| +..|...+..|+.+||
T Consensus 131 ~~~v~~~~~A~~~~~~---G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA 207 (336)
T COG2070 131 IHSVITVREALKAERA---GADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGA 207 (336)
T ss_pred EEEeCCHHHHHHHHhC---CCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhcc
Confidence 3577888888877653 2688887642 122 234788888887777 9999 4678888999999999
Q ss_pred Ce
Q 006006 127 CD 128 (665)
Q Consensus 127 ~D 128 (665)
+.
T Consensus 208 ~g 209 (336)
T COG2070 208 DG 209 (336)
T ss_pred HH
Confidence 75
No 455
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=21.27 E-value=2.7e+02 Score=31.07 Aligned_cols=67 Identities=18% Similarity=0.354 Sum_probs=51.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCccEE--ecCchHHHHHHHHcCCCeEEeCCCC---HHHHHHHHHHHHH
Q 006006 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI--TDGRVSAVMRGIRHGACDYLIKPIR---EEELKNIWQHVVR 148 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI--a~sd~e~a~kALe~GA~DYLlKPv~---~eEL~~aLq~Vlr 148 (665)
.||| -+..|++..-+.+++|++..++|+| .+-+..++.++.+.|++.|=.-|=+ .+.+...++.+.+
T Consensus 50 ~dIV--Rvtv~~~e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~~v~~vVe~Ak~ 121 (361)
T COG0821 50 CDIV--RVTVPDMEAAEALKEIKQRLNVPLVADIHFDYRLALEAAECGVDKVRINPGNIGFKDRVREVVEAAKD 121 (361)
T ss_pred CCEE--EEecCCHHHHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcCcceEEECCcccCcHHHHHHHHHHHHH
Confidence 5655 4456899999999999888899999 4556778889999999999998843 3446666665544
No 456
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=21.09 E-value=3.2e+02 Score=30.49 Aligned_cols=67 Identities=16% Similarity=0.289 Sum_probs=50.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCccEEe--cCchHHHHHHHHcCCCeEEeCCCC---HHHHHHHHHHHHH
Q 006006 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT--DGRVSAVMRGIRHGACDYLIKPIR---EEELKNIWQHVVR 148 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa--~sd~e~a~kALe~GA~DYLlKPv~---~eEL~~aLq~Vlr 148 (665)
-|| +-+-.|++.-.+.++.|++..++|+|+ +-|...+..|++.|++.+=.=|=+ .+.+...++.+.+
T Consensus 48 cei--VRvavp~~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRINPGNig~~e~v~~vv~~ak~ 119 (346)
T TIGR00612 48 CDI--VRVTVPDRESAAAFEAIKEGTNVPLVADIHFDYRLAALAMAKGVAKVRINPGNIGFRERVRDVVEKARD 119 (346)
T ss_pred CCE--EEEcCCCHHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHhccCeEEECCCCCCCHHHHHHHHHHHHH
Confidence 564 455668999999999998888999994 455566788999999999999843 5556666655543
No 457
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=21.06 E-value=4.6e+02 Score=26.45 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCceEEEEeCCC---CC-CCHHHHHHHHhccCCccEE-ecCchHHHHHHHHcCCCeEEe
Q 006006 69 ALDILRERKGCFDVVLSDVHM---PD-MDGFKLLEHIGLEMDLPVI-TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 69 ALelLre~k~~PDLVIlDI~M---P~-mDGlELLe~Ir~~~~IPVI-a~sd~e~a~kALe~GA~DYLl 131 (665)
-++.+.+.. .|+|++|... |+ ..-.++++.+++..+++++ ...+.+.+.++.+.|++-+..
T Consensus 84 ~~~~a~~aG--ad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~ 149 (219)
T cd04729 84 EVDALAAAG--ADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGT 149 (219)
T ss_pred HHHHHHHcC--CCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEc
Confidence 334444444 7899998755 43 2455677777654467766 445667778888999765433
No 458
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.04 E-value=2.7e+02 Score=29.96 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=38.7
Q ss_pred HHHHHHhcc-CC-ccEE-ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006006 96 KLLEHIGLE-MD-LPVI-TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146 (665)
Q Consensus 96 ELLe~Ir~~-~~-IPVI-a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~V 146 (665)
+.++++|.. ++ .+|. -.++.+.+.+|+++||+-.++-.+++++|+++++.+
T Consensus 170 ~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~~ 223 (273)
T PRK05848 170 EFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDNMSVEEIKEVVAYR 223 (273)
T ss_pred HHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 344555543 32 4444 456889999999999999999999999999999753
No 459
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=21.02 E-value=1.9e+02 Score=32.83 Aligned_cols=63 Identities=27% Similarity=0.361 Sum_probs=45.6
Q ss_pred CCCCccEEEEEeCCHHHHHHHH--HHHHhC------CCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCC
Q 006006 29 QFPAGLRVLVVDDDITCLRILE--QMLRRC------LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93 (665)
Q Consensus 29 ~fP~girVLIVDDD~~ire~Lk--~lL~~~------gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mD 93 (665)
.+|.-..|.+||=||.+.+.-+ ..|+.. .-+|+.+. ++|...++...+.+|.||+|+.-|...
T Consensus 309 kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~--dDAf~wlr~a~~~fD~vIVDl~DP~tp 379 (508)
T COG4262 309 KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN--DDAFQWLRTAADMFDVVIVDLPDPSTP 379 (508)
T ss_pred hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe--ccHHHHHHhhcccccEEEEeCCCCCCc
Confidence 4666779999999999988877 555543 12455443 467777776666799999999877654
No 460
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=20.83 E-value=2.9e+02 Score=31.97 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhcc-CCccEE--ecCchHHHHHHHHcCCCeEE
Q 006006 64 SQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVI--TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 64 sngeEALelLre~k~~PDLVIlDI~MP~-mDGlELLe~Ir~~-~~IPVI--a~sd~e~a~kALe~GA~DYL 130 (665)
.+..+-++.+.+.. .|.|++|..-+. ..-++++++|+.. +++||| .-.+.+.++.++++||+..-
T Consensus 224 ~~~~~ra~~Lv~aG--Vd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 224 GDVGGKAKALLDAG--VDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred ccHHHHHHHHHHhC--CCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEE
Confidence 34444455554444 899999997643 3346678888754 689999 35688889999999997654
No 461
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=20.72 E-value=5.2e+02 Score=25.99 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCC--C-CCHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEeCC
Q 006006 64 SQAAVALDILRERKGCFDVVLSDVHMP--D-MDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKP 133 (665)
Q Consensus 64 sngeEALelLre~k~~PDLVIlDI~MP--~-mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlKP 133 (665)
.+..+..+.+.+.. --.+.++|+.-- + ..-+++++++.+...+|++ .-.+.+.+.++++.||+..++--
T Consensus 30 ~~~~~~a~~~~~~g-~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 30 DDPVAQAKAWEDQG-AKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGT 104 (233)
T ss_pred CCHHHHHHHHHHcC-CCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 46677777776543 136788887421 1 2447888888777788988 45788889999999998876543
No 462
>cd00093 HTH_XRE Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.
Probab=20.71 E-value=82 Score=22.74 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=23.1
Q ss_pred HHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHH
Q 006006 245 KRILELMNVPGLTRENVASHLQEINLQKFRLYLK 278 (665)
Q Consensus 245 KkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FK 278 (665)
+.|...+...+++..++|..+|.+. .++.++.+
T Consensus 2 ~~l~~~~~~~~~s~~~~a~~~~~~~-~~v~~~~~ 34 (58)
T cd00093 2 ERLKELRKEKGLTQEELAEKLGVSR-STISRIEN 34 (58)
T ss_pred hHHHHHHHHcCCCHHHHHHHHCCCH-HHHHHHHc
Confidence 3445556668999999999999764 55555544
No 463
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=20.63 E-value=4.2e+02 Score=24.82 Aligned_cols=68 Identities=24% Similarity=0.287 Sum_probs=44.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC---CC-EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE
Q 006006 35 RVLVVDDDITCLRILEQMLRRC---LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 35 rVLIVDDD~~ire~Lk~lL~~~---gy-~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI 110 (665)
-+.||.||+..+..|++-.+.. +. ...+--...++++.+++.. |+ +.|--.+|-++++++.. .+-|++
T Consensus 26 p~FlIGdD~~S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~la--pg-----l~l~P~sgddLa~rL~l-~hYPvL 97 (105)
T TIGR03765 26 PLFLIGDDPASRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRALA--PG-----LPLLPVSGDDLAERLGL-RHYPVL 97 (105)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc--CC-----CcccCCCHHHHHHHhCC-CcccEE
Confidence 6899999999999998876543 21 1112223356777777654 45 44556789999999964 345555
No 464
>PRK08114 cystathionine beta-lyase; Provisional
Probab=20.58 E-value=3.5e+02 Score=30.44 Aligned_cols=122 Identities=14% Similarity=0.129 Sum_probs=68.9
Q ss_pred hHHHHHHhcCC-------CCCcceeeeeccCCCCCCCccEEEEEeCC-HHHHHHHHHHHHhCCCEEEEEC--CHHHHHHH
Q 006006 3 ALQRIVQSSGG-------SGYGSSRAADVAVPDQFPAGLRVLVVDDD-ITCLRILEQMLRRCLYNVTTCS--QAAVALDI 72 (665)
Q Consensus 3 i~~~~V~~mgG-------sg~Gs~f~~~~~~~d~fP~girVLIVDDD-~~ire~Lk~lL~~~gy~V~tAs--ngeEALel 72 (665)
+-++++++-|| ||.+....+-+.. +.++=+|++.++. .-....+..++.+.+..|..+. +.++..+.
T Consensus 67 le~~la~LEg~~~a~~~~SGmaAi~~~~~~l---l~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~ 143 (395)
T PRK08114 67 LQEAMCELEGGAGCALYPCGAAAVANAILAF---VEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKL 143 (395)
T ss_pred HHHHHHHHhCCCeEEEEhHHHHHHHHHHHHH---cCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHh
Confidence 44677777777 4555555444333 3455678876655 3555666777888888887665 33333333
Q ss_pred HHHcCCCceEEEEeCCC-CC---CCHHHHHHHHhcc-CCccEEecC--chHHHHHHHHcCCCeEE
Q 006006 73 LRERKGCFDVVLSDVHM-PD---MDGFKLLEHIGLE-MDLPVITDG--RVSAVMRGIRHGACDYL 130 (665)
Q Consensus 73 Lre~k~~PDLVIlDI~M-P~---mDGlELLe~Ir~~-~~IPVIa~s--d~e~a~kALe~GA~DYL 130 (665)
++. ...+|+++.-- |- .|=-++++..++. +.+++|... ..-+..+.+++|||-++
T Consensus 144 l~~---~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv 205 (395)
T PRK08114 144 IQP---NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISI 205 (395)
T ss_pred cCC---CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEE
Confidence 332 26889888522 22 2333344444544 246666221 12334778888887665
No 465
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=20.47 E-value=2.2e+02 Score=32.65 Aligned_cols=67 Identities=22% Similarity=0.199 Sum_probs=46.2
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhc-cCCccEEe--cCchHHHHHHHHcCCCeE
Q 006006 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGL-EMDLPVIT--DGRVSAVMRGIRHGACDY 129 (665)
Q Consensus 61 ~tAsngeEALelLre~k~~PDLVIlDI~MP~-mDGlELLe~Ir~-~~~IPVIa--~sd~e~a~kALe~GA~DY 129 (665)
.+-.+..+-++++.+.. .|+|++|..-.. .--+++++.|++ .+++.||+ --..+.+...+.+|||+.
T Consensus 247 GTre~dK~rl~ll~~aG--vdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgL 317 (503)
T KOG2550|consen 247 GTRDDDKERLDLLVQAG--VDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGL 317 (503)
T ss_pred ccccchhHHHHHhhhcC--CcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCcee
Confidence 34455567777776654 999999974322 235678888875 48899993 234566777889999874
No 466
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.45 E-value=2.9e+02 Score=30.09 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=34.1
Q ss_pred ccEE-ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006006 107 LPVI-TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146 (665)
Q Consensus 107 IPVI-a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~V 146 (665)
.+|. --++.+.+.+|+++||+-.++--++++++++++..+
T Consensus 198 ~kIeVEv~tleea~~a~~agaDiImLDnmspe~l~~av~~~ 238 (290)
T PRK06559 198 KMVEVEVESLAAAEEAAAAGADIIMLDNMSLEQIEQAITLI 238 (290)
T ss_pred CeEEEECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 3444 557789999999999999999999999999999753
No 467
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.40 E-value=1.2e+03 Score=27.16 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=44.0
Q ss_pred CceEEEEeCCCCCCCH--H-HHHHHHhcc-CCccEE-ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 79 CFDVVLSDVHMPDMDG--F-KLLEHIGLE-MDLPVI-TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 79 ~PDLVIlDI~MP~mDG--l-ELLe~Ir~~-~~IPVI-a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
.+.|||+|=- ..++. + .|++.+... ..+.+| .......+..++..-+.-|=.+|++.+++...+++++.+.
T Consensus 116 ~~kVVIIDEa-d~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~e 191 (504)
T PRK14963 116 GRKVYILDEA-HMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAE 191 (504)
T ss_pred CCeEEEEECc-cccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 3789999841 12222 2 234444332 233333 4444555556676667788899999999999998887653
No 468
>PLN02366 spermidine synthase
Probab=20.37 E-value=3.7e+02 Score=29.21 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=39.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC-----CCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCC
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRRC-----LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD 91 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~~-----gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP~ 91 (665)
|...+|.+||=|+.+.+..++.+... .-++. .+.++.+.++... .+.+|+||+|..-|.
T Consensus 113 ~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~--~~~yDvIi~D~~dp~ 177 (308)
T PLN02366 113 SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP--EGTYDAIIVDSSDPV 177 (308)
T ss_pred CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc--CCCCCEEEEcCCCCC
Confidence 44468999999999888888887542 12333 4556666555332 234999999986553
No 469
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=20.32 E-value=3.7e+02 Score=27.72 Aligned_cols=99 Identities=14% Similarity=0.133 Sum_probs=52.2
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCH-------HHHHHHHhcc
Q 006006 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG-------FKLLEHIGLE 104 (665)
Q Consensus 33 girVLIVDDD~-~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDG-------lELLe~Ir~~ 104 (665)
+..++.+-=|. .....+-+.++..|..+..+-+...-++.++..-...|.|++=-.-|+..| ++-++++++.
T Consensus 81 gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~ 160 (220)
T PRK08883 81 GASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKM 160 (220)
T ss_pred CCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHH
Confidence 34445444331 112233345556677766554443333333221112677766344566544 4555555432
Q ss_pred -----CCccEE--ecCchHHHHHHHHcCCCeEEe
Q 006006 105 -----MDLPVI--TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 105 -----~~IPVI--a~sd~e~a~kALe~GA~DYLl 131 (665)
.+++|. +.-+.+.+.+..++||+.++.
T Consensus 161 ~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVv 194 (220)
T PRK08883 161 IDESGRDIRLEIDGGVKVDNIREIAEAGADMFVA 194 (220)
T ss_pred HHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 236653 445678888999999997754
No 470
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=20.26 E-value=1.1e+02 Score=25.70 Aligned_cols=44 Identities=14% Similarity=0.073 Sum_probs=29.1
Q ss_pred HhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHH
Q 006006 226 LHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 280 (665)
Q Consensus 226 lg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~ 280 (665)
....+.+||..+--+.- ---|+.|||+++|+++.+--..+++.+
T Consensus 7 rQ~~vL~~I~~~~~~~G-----------~~Pt~rEIa~~~g~~S~~tv~~~L~~L 50 (65)
T PF01726_consen 7 RQKEVLEFIREYIEENG-----------YPPTVREIAEALGLKSTSTVQRHLKAL 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHS-----------S---HHHHHHHHTSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHhCCCChHHHHHHHHHH
Confidence 34556666666532222 123889999999999888888888776
No 471
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=20.23 E-value=4.6e+02 Score=27.15 Aligned_cols=66 Identities=20% Similarity=0.133 Sum_probs=51.5
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCC-------CCCHHHHHHHHhccCCccEE--ecCchHHHHHHHHcCCCeEE
Q 006006 62 TCSQAAVALDILRERKGCFDVVLSDVHMP-------DMDGFKLLEHIGLEMDLPVI--TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 62 tAsngeEALelLre~k~~PDLVIlDI~MP-------~mDGlELLe~Ir~~~~IPVI--a~sd~e~a~kALe~GA~DYL 130 (665)
++.+.+|+.+..+.. +|-|.+---.| .-.|++.++.++....+|++ +--+.+.+.+.++.||++.-
T Consensus 110 S~h~~eea~~A~~~g---~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi~~~nv~~v~~~Ga~gVA 184 (211)
T COG0352 110 STHDLEEALEAEELG---ADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGINLENVPEVLEAGADGVA 184 (211)
T ss_pred ecCCHHHHHHHHhcC---CCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHhCCCeEE
Confidence 667888888876543 89998875444 34699999998877778988 56788999999999998764
No 472
>PF13941 MutL: MutL protein
Probab=20.18 E-value=1.4e+03 Score=26.56 Aligned_cols=119 Identities=15% Similarity=0.139 Sum_probs=70.0
Q ss_pred CCCccEEEEEeCCHHHH-HHHHHHHHhCCCEEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCCCC---HHHHHHHHh
Q 006006 30 FPAGLRVLVVDDDITCL-RILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDMD---GFKLLEHIG 102 (665)
Q Consensus 30 fP~girVLIVDDD~~ir-e~Lk~lL~~~gy~V~t---AsngeEALelLre~k~~PDLVIlDI~MP~mD---GlELLe~Ir 102 (665)
..-++|++++-=.+.+- +..++.-...+-.|.. ..-.++-++.+++.+ ||+||+-=--.+.| .++..+.|.
T Consensus 73 AaGGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~~~--PDiILLaGGtDgG~~~~il~nA~~La 150 (457)
T PF13941_consen 73 AAGGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEIREIR--PDIILLAGGTDGGNKEVILHNAEMLA 150 (457)
T ss_pred CCCcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhccC--CCEEEEeCCccCCchHHHHHHHHHHH
Confidence 44568888887665443 3333333444655543 334467777787776 99999943333333 244555553
Q ss_pred -ccCCccEE-e--cCchHHHHHHHH-cCCCeEEeCCC-------CHHHHHHHHHHHHHHh
Q 006006 103 -LEMDLPVI-T--DGRVSAVMRGIR-HGACDYLIKPI-------REEELKNIWQHVVRKR 150 (665)
Q Consensus 103 -~~~~IPVI-a--~sd~e~a~kALe-~GA~DYLlKPv-------~~eEL~~aLq~Vlrk~ 150 (665)
....+||| + ..-.+.+.+.|+ .|..-|++..+ +.+-.+++|+++..++
T Consensus 151 ~~~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~ 210 (457)
T PF13941_consen 151 EANLRIPVIYAGNKAAQDEVEEILEKAGKEVVITENVMPKIDVLNVEPAREAIREVFLRH 210 (457)
T ss_pred hCCCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHH
Confidence 34578888 2 223345666777 67777777643 4455567776665544
No 473
>PLN02823 spermine synthase
Probab=20.13 E-value=1.9e+02 Score=31.81 Aligned_cols=55 Identities=22% Similarity=0.291 Sum_probs=38.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-----CCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRC-----LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP 90 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~-----gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP 90 (665)
..+|.+||=|+.+.+..++.+... .-++. ...++.+.++ +....+|+||+|+--|
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~---~~~~~yDvIi~D~~dp 187 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE---KRDEKFDVIIGDLADP 187 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh---hCCCCccEEEecCCCc
Confidence 358999999999999999888542 12332 4556665553 3334599999997544
No 474
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=20.13 E-value=3e+02 Score=29.83 Aligned_cols=81 Identities=21% Similarity=0.372 Sum_probs=54.7
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEeCCC--------CCCCHHHHHHHHhccCCccEE----ecCchHHHHHHHHcCCCeEE
Q 006006 63 CSQAAVALDILRERKGCFDVVLSDVHM--------PDMDGFKLLEHIGLEMDLPVI----TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 63 AsngeEALelLre~k~~PDLVIlDI~M--------P~mDGlELLe~Ir~~~~IPVI----a~sd~e~a~kALe~GA~DYL 130 (665)
.++.++|.+.+++.. +|.+=+-+-- |.. -++++++|++..++|++ .....+..++|++.|+.-.=
T Consensus 155 yT~peea~~Fv~~Tg--vD~LAvaiGt~HG~Y~~~p~L-d~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI~KiN 231 (286)
T PRK08610 155 YADPKECQELVEKTG--IDALAPALGSVHGPYKGEPKL-GFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAKIN 231 (286)
T ss_pred cCCHHHHHHHHHHHC--CCEEEeeccccccccCCCCCC-CHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCCeEEE
Confidence 468899999998876 8987777622 222 37889999877789988 23355778899999965431
Q ss_pred eCCCCHHHHHHHHHHHHHHh
Q 006006 131 IKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 131 lKPv~~eEL~~aLq~Vlrk~ 150 (665)
+ -.+|+.+..+.++..
T Consensus 232 ---i-~T~l~~a~~~~~~~~ 247 (286)
T PRK08610 232 ---V-NTENQIASAKAVRDV 247 (286)
T ss_pred ---e-ccHHHHHHHHHHHHH
Confidence 1 235555555555543
No 475
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=20.09 E-value=93 Score=29.10 Aligned_cols=35 Identities=9% Similarity=0.147 Sum_probs=27.9
Q ss_pred HHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHh
Q 006006 246 RILELMNVPGLTRENVASHLQEINLQKFRLYLKRLN 281 (665)
Q Consensus 246 kILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~ 281 (665)
+|.++|..-|++.+|+|..+|. +.++++++.+...
T Consensus 9 ~l~~ll~~~Glsq~eLA~~~Gi-s~~~is~iE~g~~ 43 (120)
T PRK13890 9 NVLRLLDERHMTKKELSERSGV-SISFLSDLTTGKA 43 (120)
T ss_pred HHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHcCCC
Confidence 4556777889999999999995 5788888877653
No 476
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=20.02 E-value=6e+02 Score=29.70 Aligned_cols=94 Identities=13% Similarity=0.132 Sum_probs=61.0
Q ss_pred HHHHHHHhCCCEEE--EECCHHHHHHHHHH---cCCCceEEEEeCC----CCCCC-HHHHHHHHhccCCccEE--ecCch
Q 006006 48 ILEQMLRRCLYNVT--TCSQAAVALDILRE---RKGCFDVVLSDVH----MPDMD-GFKLLEHIGLEMDLPVI--TDGRV 115 (665)
Q Consensus 48 ~Lk~lL~~~gy~V~--tAsngeEALelLre---~k~~PDLVIlDI~----MP~mD-GlELLe~Ir~~~~IPVI--a~sd~ 115 (665)
.+.+.|+..|+.+. -+..+...+..++. .+ ||.|=+|-. ++... -.+.+..+.....+.+| .-.+.
T Consensus 543 ~~~~~l~~~G~~ialDdfG~g~ss~~~L~~~~~l~--~d~iKid~~~~~~~~~~~~~~~~i~~~a~~l~~~viaegVEt~ 620 (660)
T PRK11829 543 RLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLP--IHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVMAEGVETE 620 (660)
T ss_pred HHHHHHHhCCCEEEEECCCCchhhHHHHhccCCCC--CcEEEECHHHHhcccCCHHHHHHHHHHHHHcCCeEEEecCCCH
Confidence 34445666688765 47777888888887 76 999999942 22211 12233333344567788 44566
Q ss_pred HHHHHHHHcCCC----eEEeCCCCHHHHHHHH
Q 006006 116 SAVMRGIRHGAC----DYLIKPIREEELKNIW 143 (665)
Q Consensus 116 e~a~kALe~GA~----DYLlKPv~~eEL~~aL 143 (665)
+....+.+.|++ .|+.||...+++....
T Consensus 621 ~~~~~l~~~g~d~~QGy~~~~P~~~~~~~~~~ 652 (660)
T PRK11829 621 EQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY 652 (660)
T ss_pred HHHHHHHHcCCCEEecCcccCCCCHHHHHHHh
Confidence 666667788884 3688999999886544
Done!