Query 006006
Match_columns 665
No_of_seqs 407 out of 2418
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 13:26:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 6.5E-23 2.2E-27 190.7 15.4 119 29-149 8-133 (134)
2 3mm4_A Histidine kinase homolo 99.8 2.4E-20 8.1E-25 181.5 15.5 141 8-150 16-197 (206)
3 3r0j_A Possible two component 99.8 2.2E-19 7.5E-24 178.4 19.2 167 17-185 1-191 (250)
4 3f6p_A Transcriptional regulat 99.8 2.9E-19 9.9E-24 157.2 15.5 113 34-148 3-118 (120)
5 3gl9_A Response regulator; bet 99.8 3.3E-19 1.1E-23 157.6 15.9 113 34-148 3-121 (122)
6 3t6k_A Response regulator rece 99.8 7E-19 2.4E-23 158.3 16.9 116 33-150 4-125 (136)
7 1a04_A Nitrate/nitrite respons 99.8 1.1E-18 3.9E-23 168.3 18.2 165 32-198 4-182 (215)
8 2lpm_A Two-component response 99.8 3.5E-21 1.2E-25 176.9 -0.5 111 31-147 6-120 (123)
9 2r25_B Osmosensing histidine p 99.8 1E-18 3.4E-23 156.7 15.1 115 33-149 2-127 (133)
10 3rqi_A Response regulator prot 99.8 5.1E-19 1.7E-23 168.0 13.1 117 33-151 7-127 (184)
11 3q9s_A DNA-binding response re 99.8 9.3E-19 3.2E-23 175.2 14.4 151 33-185 37-197 (249)
12 1yio_A Response regulatory pro 99.8 7.9E-19 2.7E-23 168.2 12.8 164 33-199 4-171 (208)
13 3m6m_D Sensory/regulatory prot 99.8 3.3E-18 1.1E-22 155.5 15.6 117 31-149 12-136 (143)
14 3h1g_A Chemotaxis protein CHEY 99.8 6.5E-18 2.2E-22 150.0 16.1 115 33-148 5-126 (129)
15 3gt7_A Sensor protein; structu 99.8 7E-18 2.4E-22 154.9 16.7 119 32-152 6-130 (154)
16 2pl1_A Transcriptional regulat 99.8 1.2E-17 4.2E-22 145.0 17.4 115 34-150 1-119 (121)
17 1zgz_A Torcad operon transcrip 99.8 1.3E-17 4.3E-22 145.5 17.4 115 34-150 3-120 (122)
18 3crn_A Response regulator rece 99.8 1.1E-17 3.7E-22 149.2 17.0 117 33-151 3-123 (132)
19 2a9o_A Response regulator; ess 99.8 9.5E-18 3.3E-22 145.2 16.2 114 34-149 2-118 (120)
20 1i3c_A Response regulator RCP1 99.8 9.6E-18 3.3E-22 152.8 16.6 120 31-150 6-138 (149)
21 1xhf_A DYE resistance, aerobic 99.8 1.4E-17 4.8E-22 145.4 16.9 115 34-150 4-121 (123)
22 1kgs_A DRRD, DNA binding respo 99.8 7.2E-18 2.5E-22 163.1 16.4 151 33-185 2-166 (225)
23 2qzj_A Two-component response 99.8 9.2E-18 3.1E-22 151.0 15.9 116 33-150 4-122 (136)
24 1dbw_A Transcriptional regulat 99.8 1.3E-17 4.4E-22 146.9 16.3 115 33-149 3-121 (126)
25 3hv2_A Response regulator/HD d 99.8 2E-17 7E-22 151.0 17.6 121 30-152 11-136 (153)
26 1srr_A SPO0F, sporulation resp 99.8 1.2E-17 4E-22 146.4 14.9 113 34-148 4-120 (124)
27 1p6q_A CHEY2; chemotaxis, sign 99.8 9.3E-18 3.2E-22 147.7 14.2 117 31-149 4-127 (129)
28 1zh2_A KDP operon transcriptio 99.8 1.7E-17 5.7E-22 143.8 15.5 115 34-150 2-119 (121)
29 1jbe_A Chemotaxis protein CHEY 99.8 2.3E-17 7.8E-22 145.0 16.5 116 32-149 3-125 (128)
30 3hdg_A Uncharacterized protein 99.8 1.6E-17 5.5E-22 148.0 15.6 119 32-152 6-128 (137)
31 2oqr_A Sensory transduction pr 99.8 9.2E-18 3.1E-22 163.2 15.1 150 34-185 5-171 (230)
32 1tmy_A CHEY protein, TMY; chem 99.8 1.7E-17 5.7E-22 144.3 15.2 113 33-147 2-119 (120)
33 3grc_A Sensor protein, kinase; 99.7 1E-17 3.5E-22 149.8 13.8 119 32-152 5-130 (140)
34 3h5i_A Response regulator/sens 99.7 6E-18 2E-22 152.3 12.2 119 32-152 4-127 (140)
35 3jte_A Response regulator rece 99.7 3.8E-17 1.3E-21 146.6 17.1 121 33-153 3-127 (143)
36 3lua_A Response regulator rece 99.7 4.9E-18 1.7E-22 152.2 11.1 118 32-151 3-129 (140)
37 2gwr_A DNA-binding response re 99.7 1.1E-17 3.7E-22 164.8 14.5 150 34-185 6-168 (238)
38 3b2n_A Uncharacterized protein 99.7 2.2E-17 7.4E-22 147.4 15.1 115 34-150 4-124 (133)
39 1k68_A Phytochrome response re 99.7 3.5E-17 1.2E-21 144.6 16.3 119 33-151 2-133 (140)
40 1mb3_A Cell division response 99.7 1.8E-17 6E-22 144.6 14.1 113 34-148 2-120 (124)
41 1ys7_A Transcriptional regulat 99.7 1.8E-17 6.3E-22 161.1 15.7 160 33-194 7-187 (233)
42 3hdv_A Response regulator; PSI 99.7 3.7E-17 1.3E-21 145.5 16.3 119 31-150 5-128 (136)
43 3n0r_A Response regulator; sig 99.7 2.5E-18 8.7E-23 177.3 10.1 116 33-150 160-278 (286)
44 3ilh_A Two component response 99.7 4.4E-17 1.5E-21 145.7 16.8 118 31-150 7-140 (146)
45 3heb_A Response regulator rece 99.7 3.7E-17 1.3E-21 148.8 16.5 119 32-150 3-136 (152)
46 3kht_A Response regulator; PSI 99.7 2.6E-17 9E-22 148.1 15.3 119 32-152 4-131 (144)
47 3cnb_A DNA-binding response re 99.7 4.7E-17 1.6E-21 145.0 16.8 118 31-150 6-131 (143)
48 4e7p_A Response regulator; DNA 99.7 2.1E-17 7.3E-22 150.4 14.8 120 30-151 17-142 (150)
49 3kto_A Response regulator rece 99.7 7.8E-18 2.7E-22 150.8 11.5 118 32-151 5-128 (136)
50 3eod_A Protein HNR; response r 99.7 1.9E-17 6.6E-22 146.2 13.9 117 32-150 6-127 (130)
51 3c3w_A Two component transcrip 99.7 3.9E-18 1.3E-22 167.2 10.2 163 34-198 2-177 (225)
52 1dz3_A Stage 0 sporulation pro 99.7 2.9E-17 9.9E-22 145.4 14.9 115 34-150 3-124 (130)
53 2zay_A Response regulator rece 99.7 2.7E-17 9.2E-22 148.2 14.7 119 31-151 6-130 (147)
54 3cfy_A Putative LUXO repressor 99.7 2.9E-17 1E-21 147.9 14.8 116 34-151 5-124 (137)
55 3i42_A Response regulator rece 99.7 1.6E-17 5.3E-22 146.2 12.6 115 33-150 3-123 (127)
56 3f6c_A Positive transcription 99.7 1.4E-17 4.7E-22 147.5 12.3 117 33-151 1-122 (134)
57 3nhm_A Response regulator; pro 99.7 3.1E-17 1.1E-21 145.1 14.4 116 32-151 3-124 (133)
58 1s8n_A Putative antiterminator 99.7 3.1E-17 1.1E-21 157.4 15.5 118 32-151 12-133 (205)
59 3lte_A Response regulator; str 99.7 4.9E-17 1.7E-21 143.7 15.5 118 31-150 4-126 (132)
60 3hzh_A Chemotaxis response reg 99.7 2.8E-17 9.6E-22 151.3 14.4 114 32-147 35-155 (157)
61 3luf_A Two-component system re 99.7 3.7E-17 1.3E-21 165.2 16.6 120 32-152 123-248 (259)
62 1k66_A Phytochrome response re 99.7 6.1E-17 2.1E-21 144.9 16.0 118 32-151 5-140 (149)
63 1mvo_A PHOP response regulator 99.7 6E-17 2.1E-21 143.8 15.5 115 34-150 4-122 (136)
64 3cg0_A Response regulator rece 99.7 9.5E-17 3.3E-21 142.8 16.2 119 32-152 8-131 (140)
65 3klo_A Transcriptional regulat 99.7 6.2E-18 2.1E-22 165.2 9.0 167 31-199 5-188 (225)
66 3eul_A Possible nitrate/nitrit 99.7 9.8E-17 3.3E-21 146.0 15.9 121 29-151 11-137 (152)
67 2jba_A Phosphate regulon trans 99.7 1.3E-17 4.5E-22 146.0 9.7 114 34-149 3-122 (127)
68 3n53_A Response regulator rece 99.7 2.5E-17 8.5E-22 147.6 11.5 118 33-153 3-126 (140)
69 1p2f_A Response regulator; DRR 99.7 6E-17 2E-21 156.8 14.7 147 34-185 3-160 (220)
70 4dad_A Putative pilus assembly 99.7 3E-17 1E-21 148.1 11.6 119 30-150 17-142 (146)
71 3kcn_A Adenylate cyclase homol 99.7 1.2E-16 4.2E-21 145.5 15.7 118 32-151 3-125 (151)
72 3cg4_A Response regulator rece 99.7 4.8E-17 1.6E-21 145.4 12.3 120 31-152 5-130 (142)
73 3snk_A Response regulator CHEY 99.7 5.7E-18 1.9E-22 151.2 6.1 116 32-149 13-133 (135)
74 3c3m_A Response regulator rece 99.7 9.9E-17 3.4E-21 144.0 14.2 115 34-150 4-124 (138)
75 2rjn_A Response regulator rece 99.7 2.3E-16 7.8E-21 143.9 16.6 118 32-151 6-128 (154)
76 2qr3_A Two-component system re 99.7 2E-16 7E-21 140.7 15.3 116 33-150 3-127 (140)
77 2ayx_A Sensor kinase protein R 99.7 1.1E-16 3.9E-21 160.7 15.3 117 32-150 128-248 (254)
78 2qxy_A Response regulator; reg 99.7 1.1E-16 3.9E-21 143.3 13.4 117 32-151 3-123 (142)
79 3dzd_A Transcriptional regulat 99.7 6.1E-17 2.1E-21 173.0 13.3 116 34-151 1-120 (368)
80 1dcf_A ETR1 protein; beta-alph 99.7 1.2E-16 4E-21 142.5 12.9 115 32-149 6-129 (136)
81 2gkg_A Response regulator homo 99.7 2.3E-16 8E-21 137.0 14.2 113 34-148 6-124 (127)
82 3a10_A Response regulator; pho 99.7 1.1E-16 3.9E-21 138.2 12.0 110 34-147 2-115 (116)
83 3cu5_A Two component transcrip 99.7 7.6E-17 2.6E-21 145.8 11.1 116 34-151 3-125 (141)
84 3eq2_A Probable two-component 99.7 1.2E-16 4E-21 169.7 14.3 116 33-150 5-125 (394)
85 2qvg_A Two component response 99.7 3.5E-16 1.2E-20 140.0 14.9 115 32-148 6-134 (143)
86 2jk1_A HUPR, hydrogenase trans 99.7 5E-16 1.7E-20 139.3 15.5 114 34-150 2-120 (139)
87 1qkk_A DCTD, C4-dicarboxylate 99.7 3.5E-16 1.2E-20 142.8 14.8 118 32-151 2-123 (155)
88 2qv0_A Protein MRKE; structura 99.7 6.4E-16 2.2E-20 138.6 16.0 119 32-152 8-130 (143)
89 3kyj_B CHEY6 protein, putative 99.7 1.6E-16 5.4E-21 143.5 11.8 112 30-143 10-129 (145)
90 3cz5_A Two-component response 99.7 3.9E-16 1.3E-20 142.1 13.8 117 32-150 4-126 (153)
91 2hqr_A Putative transcriptiona 99.7 2.5E-16 8.5E-21 152.7 12.6 146 34-185 1-158 (223)
92 1ny5_A Transcriptional regulat 99.7 5.3E-16 1.8E-20 166.5 15.8 115 34-150 1-119 (387)
93 1w25_A Stalked-cell differenti 99.7 6E-16 2.1E-20 166.7 16.3 115 34-150 2-122 (459)
94 3c97_A Signal transduction his 99.7 1.4E-16 4.8E-21 143.0 9.2 112 34-150 11-131 (140)
95 3t8y_A CHEB, chemotaxis respon 99.7 8.6E-16 3E-20 142.9 14.3 116 31-148 23-154 (164)
96 2qsj_A DNA-binding response re 99.7 4.7E-16 1.6E-20 141.4 12.0 117 33-151 3-126 (154)
97 2pln_A HP1043, response regula 99.6 2.6E-15 8.9E-20 133.9 14.9 115 30-150 15-134 (137)
98 3bre_A Probable two-component 99.6 7.8E-16 2.7E-20 159.8 13.2 115 33-149 18-139 (358)
99 2rdm_A Response regulator rece 99.6 2.7E-15 9.4E-20 132.1 14.4 115 32-150 4-124 (132)
100 2j48_A Two-component sensor ki 99.6 7.6E-16 2.6E-20 131.3 10.4 110 33-147 1-116 (119)
101 3sy8_A ROCR; TIM barrel phosph 99.6 1.2E-15 4.1E-20 163.3 13.6 116 33-150 3-129 (400)
102 3eqz_A Response regulator; str 99.6 1E-15 3.4E-20 135.1 9.9 115 33-150 3-126 (135)
103 1qo0_D AMIR; binding protein, 99.6 1.2E-15 4.2E-20 145.2 8.7 112 32-150 11-126 (196)
104 1dc7_A NTRC, nitrogen regulati 99.6 7E-17 2.4E-21 140.1 -1.8 116 33-150 3-122 (124)
105 2b4a_A BH3024; flavodoxin-like 99.6 6.9E-15 2.3E-19 131.4 8.8 114 29-148 11-130 (138)
106 1a2o_A CHEB methylesterase; ba 99.5 6.3E-14 2.2E-18 148.9 15.8 115 33-149 3-133 (349)
107 3luf_A Two-component system re 99.5 5.4E-14 1.8E-18 142.0 8.2 99 34-136 5-107 (259)
108 1irz_A ARR10-B; helix-turn-hel 99.4 2.2E-13 7.6E-18 111.9 6.4 62 214-280 2-63 (64)
109 2vyc_A Biodegradative arginine 99.4 3.4E-13 1.2E-17 156.6 8.8 116 34-150 1-134 (755)
110 3oou_A LIN2118 protein; protei 99.2 6.6E-12 2.3E-16 111.0 3.0 61 221-286 41-101 (108)
111 2k9s_A Arabinose operon regula 99.2 5.6E-12 1.9E-16 111.2 2.5 61 221-286 40-100 (107)
112 3oio_A Transcriptional regulat 99.2 7.8E-12 2.7E-16 111.3 2.7 61 221-286 43-103 (113)
113 3lsg_A Two-component response 99.1 1.1E-11 3.6E-16 108.6 3.0 61 221-286 39-99 (103)
114 3mn2_A Probable ARAC family tr 99.1 1.4E-11 4.7E-16 108.7 3.3 61 221-286 38-100 (108)
115 1bl0_A Protein (multiple antib 99.1 1.2E-11 4.1E-16 112.9 2.5 61 221-286 47-107 (129)
116 3mkl_A HTH-type transcriptiona 99.1 3.7E-11 1.3E-15 108.2 3.5 60 221-286 43-102 (120)
117 3gbg_A TCP pilus virulence reg 98.9 1.3E-10 4.5E-15 117.2 1.5 60 221-286 205-264 (276)
118 1d5y_A ROB transcription facto 98.8 4.2E-10 1.4E-14 114.3 0.8 63 219-286 37-99 (292)
119 3cwo_X Beta/alpha-barrel prote 98.8 2.3E-09 7.8E-14 103.7 5.4 89 58-148 6-100 (237)
120 4fe7_A Xylose operon regulator 98.8 1.5E-09 5.1E-14 115.8 2.3 62 220-286 340-401 (412)
121 1w25_A Stalked-cell differenti 98.7 1.5E-07 5E-12 101.3 16.8 115 32-150 151-271 (459)
122 1u8b_A ADA polyprotein; protei 97.4 0.0001 3.5E-09 67.0 4.0 50 231-286 73-123 (133)
123 2ayx_A Sensor kinase protein R 96.0 0.0058 2E-07 60.8 5.3 96 32-148 10-105 (254)
124 2yxb_A Coenzyme B12-dependent 95.0 0.43 1.5E-05 45.0 14.1 117 32-150 17-146 (161)
125 3n75_A LDC, lysine decarboxyla 94.5 0.04 1.4E-06 63.9 6.5 101 45-150 18-124 (715)
126 3cwo_X Beta/alpha-barrel prote 94.3 0.2 6.8E-06 47.7 10.0 79 65-144 131-221 (237)
127 2k9s_A Arabinose operon regula 93.9 0.031 1.1E-06 48.5 3.2 40 247-287 12-51 (107)
128 3q7r_A Transcriptional regulat 93.8 0.056 1.9E-06 48.3 4.5 105 34-150 13-119 (121)
129 3mn2_A Probable ARAC family tr 93.8 0.037 1.3E-06 48.0 3.4 38 248-287 12-49 (108)
130 3oio_A Transcriptional regulat 92.8 0.048 1.7E-06 47.7 2.6 33 254-287 22-54 (113)
131 3lsg_A Two-component response 92.7 0.11 3.8E-06 44.6 4.6 40 247-287 11-50 (103)
132 3oou_A LIN2118 protein; protei 92.0 0.14 4.8E-06 44.4 4.5 33 254-287 20-52 (108)
133 1bl0_A Protein (multiple antib 89.3 0.21 7E-06 44.9 3.1 33 254-287 26-58 (129)
134 1wv2_A Thiazole moeity, thiazo 88.7 4.1 0.00014 41.9 12.5 104 40-148 119-237 (265)
135 3q58_A N-acetylmannosamine-6-p 87.5 2.2 7.7E-05 42.5 9.6 96 33-132 101-210 (229)
136 1ccw_A Protein (glutamate muta 85.7 6.3 0.00021 35.9 10.9 104 40-145 14-132 (137)
137 3igs_A N-acetylmannosamine-6-p 84.2 4 0.00014 40.7 9.5 96 33-132 101-210 (232)
138 1d5y_A ROB transcription facto 84.0 0.35 1.2E-05 48.4 1.7 34 253-287 17-50 (292)
139 3fkq_A NTRC-like two-domain pr 82.3 2.9 0.0001 43.9 8.1 106 32-149 20-128 (373)
140 2htm_A Thiazole biosynthesis p 79.1 10 0.00035 39.0 10.4 105 39-148 107-228 (268)
141 3mkl_A HTH-type transcriptiona 78.0 1.5 5E-05 38.6 3.4 32 254-287 22-53 (120)
142 2i2x_B MTAC, methyltransferase 76.6 21 0.00071 35.8 11.9 109 31-147 121-242 (258)
143 3gbg_A TCP pilus virulence reg 72.5 2.4 8.3E-05 41.9 3.7 32 254-287 184-215 (276)
144 4fo4_A Inosine 5'-monophosphat 72.3 26 0.00088 37.4 11.8 96 32-131 119-239 (366)
145 1req_A Methylmalonyl-COA mutas 71.9 21 0.00071 41.6 11.7 115 32-149 595-723 (727)
146 3ezx_A MMCP 1, monomethylamine 71.1 7.6 0.00026 38.2 6.9 97 31-132 90-203 (215)
147 2gek_A Phosphatidylinositol ma 69.8 18 0.00061 36.6 9.7 108 33-149 240-349 (406)
148 1xrs_B D-lysine 5,6-aminomutas 69.7 21 0.00071 36.5 9.9 113 32-149 119-258 (262)
149 1y80_A Predicted cobalamin bin 68.7 13 0.00044 35.8 7.9 95 32-131 87-196 (210)
150 2q5c_A NTRC family transcripti 68.6 62 0.0021 31.1 12.7 55 32-86 3-58 (196)
151 3ffs_A Inosine-5-monophosphate 68.6 23 0.00077 38.3 10.5 96 33-131 156-274 (400)
152 1r8j_A KAIA; circadian clock p 67.5 30 0.001 35.8 10.4 123 26-150 2-130 (289)
153 2xij_A Methylmalonyl-COA mutas 67.3 26 0.00088 41.0 11.2 117 32-150 603-732 (762)
154 2bfw_A GLGA glycogen synthase; 66.5 35 0.0012 31.0 10.1 106 33-148 70-179 (200)
155 4fe7_A Xylose operon regulator 66.3 2.5 8.6E-05 44.5 2.4 34 253-287 319-352 (412)
156 1xi3_A Thiamine phosphate pyro 66.1 35 0.0012 32.1 10.3 67 62-131 114-189 (215)
157 3kp1_A D-ornithine aminomutase 63.8 22 0.00074 41.1 9.4 113 33-150 602-736 (763)
158 3khj_A Inosine-5-monophosphate 63.2 30 0.001 36.7 10.0 97 32-131 116-235 (361)
159 3f4w_A Putative hexulose 6 pho 62.6 87 0.003 29.5 12.4 112 33-146 77-206 (211)
160 3beo_A UDP-N-acetylglucosamine 62.6 48 0.0016 33.2 11.1 60 80-149 283-342 (375)
161 1mu5_A Type II DNA topoisomera 60.9 1.8 6.3E-05 47.7 0.2 100 1-102 113-244 (471)
162 3qja_A IGPS, indole-3-glycerol 59.9 86 0.0029 31.8 12.4 84 45-132 150-242 (272)
163 3usb_A Inosine-5'-monophosphat 59.1 56 0.0019 36.1 11.7 98 32-132 267-388 (511)
164 3fro_A GLGA glycogen synthase; 58.7 70 0.0024 32.4 11.6 108 32-148 284-394 (439)
165 2l69_A Rossmann 2X3 fold prote 58.6 84 0.0029 27.7 10.2 113 34-150 3-124 (134)
166 1yad_A Regulatory protein TENI 58.4 33 0.0011 32.9 8.7 67 62-131 116-191 (221)
167 3kts_A Glycerol uptake operon 57.2 11 0.00038 36.9 5.0 59 67-131 117-178 (192)
168 1rzu_A Glycogen synthase 1; gl 57.1 56 0.0019 34.2 10.9 108 33-148 320-439 (485)
169 3qhp_A Type 1 capsular polysac 55.9 36 0.0012 30.0 7.9 108 32-149 31-140 (166)
170 2f9f_A First mannosyl transfer 55.5 87 0.003 28.2 10.6 108 33-150 50-163 (177)
171 2lci_A Protein OR36; structura 55.4 29 0.001 30.5 6.8 39 37-75 81-119 (134)
172 2ekc_A AQ_1548, tryptophan syn 55.2 35 0.0012 34.2 8.5 68 79-146 44-143 (262)
173 2qzs_A Glycogen synthase; glyc 54.1 48 0.0016 34.8 9.8 108 33-148 321-440 (485)
174 1xm3_A Thiazole biosynthesis p 53.7 40 0.0014 33.9 8.7 85 44-132 114-207 (264)
175 3iot_A Maltose-binding protein 53.7 2.4 8.2E-05 45.1 -0.4 54 34-87 7-64 (449)
176 1geq_A Tryptophan synthase alp 53.4 39 0.0013 32.9 8.3 50 95-144 69-127 (248)
177 1ka9_F Imidazole glycerol phos 53.0 76 0.0026 30.8 10.4 75 67-143 155-242 (252)
178 1thf_D HISF protein; thermophI 51.8 98 0.0034 30.0 11.0 76 66-143 153-241 (253)
179 3r2g_A Inosine 5'-monophosphat 51.7 1.6E+02 0.0056 31.2 13.3 95 32-131 111-227 (361)
180 2c6q_A GMP reductase 2; TIM ba 51.5 95 0.0032 32.6 11.4 98 33-134 132-255 (351)
181 3o63_A Probable thiamine-phosp 50.7 70 0.0024 31.9 9.8 82 62-146 141-238 (243)
182 3c48_A Predicted glycosyltrans 50.0 89 0.0031 32.0 10.8 109 33-149 276-391 (438)
183 2gjl_A Hypothetical protein PA 49.8 1.3E+02 0.0043 30.8 11.9 75 54-131 115-200 (328)
184 1vgv_A UDP-N-acetylglucosamine 48.6 47 0.0016 33.4 8.3 43 105-149 300-342 (384)
185 3fwz_A Inner membrane protein 48.5 64 0.0022 28.4 8.3 93 32-131 29-124 (140)
186 4avf_A Inosine-5'-monophosphat 47.8 1E+02 0.0035 33.8 11.3 96 33-132 241-361 (490)
187 1qop_A Tryptophan synthase alp 47.3 50 0.0017 33.1 8.2 68 79-146 44-143 (268)
188 1ep3_A Dihydroorotate dehydrog 46.7 53 0.0018 33.0 8.3 86 43-130 150-268 (311)
189 2r60_A Glycosyl transferase, g 46.1 99 0.0034 32.6 10.7 112 33-148 294-423 (499)
190 4dzz_A Plasmid partitioning pr 46.0 37 0.0013 31.3 6.5 53 32-87 29-83 (206)
191 3duw_A OMT, O-methyltransferas 45.7 72 0.0025 29.8 8.6 71 29-101 79-153 (223)
192 3vnd_A TSA, tryptophan synthas 45.5 44 0.0015 34.0 7.5 77 68-146 36-144 (267)
193 1jcn_A Inosine monophosphate d 45.3 1.3E+02 0.0043 33.0 11.7 99 33-134 267-390 (514)
194 2iw1_A Lipopolysaccharide core 45.2 40 0.0014 33.5 7.1 107 33-149 228-337 (374)
195 1b3q_A Protein (chemotaxis pro 44.4 16 0.00053 38.5 4.0 27 1-27 215-248 (379)
196 3rht_A (gatase1)-like protein; 43.9 5.5 0.00019 40.6 0.4 49 34-86 5-57 (259)
197 3qz6_A HPCH/HPAI aldolase; str 43.5 1.5E+02 0.0052 29.7 11.1 96 49-146 6-110 (261)
198 1eep_A Inosine 5'-monophosphat 43.4 89 0.0031 33.1 9.8 86 43-131 179-284 (404)
199 3bo9_A Putative nitroalkan dio 43.4 1.1E+02 0.0038 31.5 10.3 75 54-131 121-204 (326)
200 3bw2_A 2-nitropropane dioxygen 42.3 1.5E+02 0.0052 30.9 11.2 72 57-131 145-236 (369)
201 2gl5_A Putative dehydratase pr 42.0 77 0.0026 33.5 9.0 79 65-145 230-312 (410)
202 1u8b_A ADA polyprotein; protei 41.9 6.7 0.00023 34.9 0.6 21 221-241 113-133 (133)
203 1v4v_A UDP-N-acetylglucosamine 41.9 1.3E+02 0.0046 30.0 10.5 100 34-148 231-333 (376)
204 4fxs_A Inosine-5'-monophosphat 41.6 1.5E+02 0.0051 32.6 11.5 96 33-132 243-363 (496)
205 3tr6_A O-methyltransferase; ce 41.6 65 0.0022 30.1 7.6 60 29-88 85-149 (225)
206 3ajx_A 3-hexulose-6-phosphate 41.1 19 0.00064 34.1 3.7 80 64-145 10-98 (207)
207 3okp_A GDP-mannose-dependent a 40.6 59 0.002 32.5 7.5 107 33-148 229-343 (394)
208 1y0e_A Putative N-acetylmannos 40.4 1E+02 0.0034 29.3 8.8 73 57-132 119-204 (223)
209 2w6r_A Imidazole glycerol phos 40.2 98 0.0033 30.3 8.9 65 66-132 158-229 (266)
210 2z6i_A Trans-2-enoyl-ACP reduc 40.1 1.3E+02 0.0044 30.9 10.2 73 56-131 109-190 (332)
211 3bul_A Methionine synthase; tr 40.1 94 0.0032 35.2 9.7 99 32-132 97-211 (579)
212 1h5y_A HISF; histidine biosynt 39.9 1.1E+02 0.0037 29.1 9.0 67 63-131 32-105 (253)
213 2al1_A Enolase 1, 2-phospho-D- 39.6 38 0.0013 36.9 6.2 78 65-143 274-356 (436)
214 3noy_A 4-hydroxy-3-methylbut-2 39.6 46 0.0016 35.6 6.6 67 80-148 60-131 (366)
215 3f4w_A Putative hexulose 6 pho 39.2 36 0.0012 32.2 5.4 80 65-146 11-99 (211)
216 2xci_A KDO-transferase, 3-deox 39.1 28 0.00095 36.2 4.9 50 95-149 293-346 (374)
217 1oyi_A Double-stranded RNA-bin 38.8 18 0.00061 30.9 2.7 35 245-280 20-54 (82)
218 4adt_A Pyridoxine biosynthetic 38.7 1.6E+02 0.0056 30.3 10.6 87 60-149 129-260 (297)
219 1h5y_A HISF; histidine biosynt 38.7 1.4E+02 0.0049 28.2 9.7 77 65-143 155-244 (253)
220 1qo2_A Molecule: N-((5-phospho 38.5 1.1E+02 0.0038 29.6 8.9 75 65-142 145-239 (241)
221 2x6q_A Trehalose-synthase TRET 38.2 2.8E+02 0.0095 28.1 12.3 107 33-149 262-379 (416)
222 2gjl_A Hypothetical protein PA 38.1 1.8E+02 0.0063 29.6 10.9 61 65-132 84-145 (328)
223 3ffs_A Inosine-5-monophosphate 37.9 66 0.0023 34.7 7.7 63 67-131 146-211 (400)
224 1geq_A Tryptophan synthase alp 37.9 1.3E+02 0.0044 29.1 9.3 80 49-132 125-220 (248)
225 2iuy_A Avigt4, glycosyltransfe 37.6 32 0.0011 34.2 4.9 107 33-148 188-307 (342)
226 3ulq_B Transcriptional regulat 37.1 32 0.0011 29.0 4.1 39 245-284 35-75 (90)
227 2e0a_A Pyruvate dehydrogenase 37.0 14 0.00047 38.9 2.2 27 1-27 317-350 (394)
228 1ujp_A Tryptophan synthase alp 37.0 56 0.0019 33.2 6.7 81 66-146 29-140 (271)
229 1y8o_A [pyruvate dehydrogenase 36.9 14 0.00047 39.4 2.2 27 1-27 341-374 (419)
230 2tps_A Protein (thiamin phosph 36.8 92 0.0031 29.6 7.9 67 62-131 122-199 (227)
231 1ka9_F Imidazole glycerol phos 36.7 1.3E+02 0.0044 29.1 9.1 66 65-132 32-104 (252)
232 2btz_A Pyruvate dehydrogenase 36.7 14 0.00048 38.8 2.2 27 1-27 317-350 (394)
233 3tj4_A Mandelate racemase; eno 36.7 1.4E+02 0.0049 31.2 10.0 79 65-145 209-291 (372)
234 4e38_A Keto-hydroxyglutarate-a 36.6 85 0.0029 31.4 7.8 87 51-140 29-120 (232)
235 2rdx_A Mandelate racemase/muco 36.5 70 0.0024 33.5 7.5 105 34-143 164-278 (379)
236 2poz_A Putative dehydratase; o 36.0 73 0.0025 33.5 7.6 77 65-143 211-291 (392)
237 2q8g_A [pyruvate dehydrogenase 35.8 15 0.0005 38.9 2.2 27 1-27 330-363 (407)
238 3cbg_A O-methyltransferase; cy 35.8 94 0.0032 29.7 7.8 60 29-88 93-157 (232)
239 4b8c_D Glucose-repressible alc 35.6 7.9 0.00027 44.4 0.0 7 424-430 72-78 (727)
240 2akz_A Gamma enolase, neural; 35.5 47 0.0016 36.2 6.1 79 65-144 271-354 (439)
241 3jr2_A Hexulose-6-phosphate sy 34.8 24 0.00083 34.1 3.4 81 64-146 16-105 (218)
242 1tqj_A Ribulose-phosphate 3-ep 34.8 55 0.0019 32.1 6.0 80 65-146 18-108 (230)
243 2gdq_A YITF; mandelate racemas 34.4 1.3E+02 0.0044 31.6 9.2 78 65-144 196-278 (382)
244 3tdn_A FLR symmetric alpha-bet 34.4 90 0.0031 30.4 7.5 65 65-131 36-107 (247)
245 3ju3_A Probable 2-oxoacid ferr 34.3 1.3E+02 0.0046 26.3 8.0 81 65-147 27-116 (118)
246 2oo3_A Protein involved in cat 34.2 27 0.00091 36.2 3.7 56 32-87 112-167 (283)
247 1rd5_A Tryptophan synthase alp 34.2 82 0.0028 31.1 7.3 67 79-145 45-138 (262)
248 3s83_A Ggdef family protein; s 33.9 1.3E+02 0.0044 29.2 8.6 113 31-145 122-254 (259)
249 3r2g_A Inosine 5'-monophosphat 33.8 99 0.0034 32.9 8.2 63 67-131 102-168 (361)
250 3lab_A Putative KDPG (2-keto-3 33.4 69 0.0023 31.8 6.4 80 60-141 18-101 (217)
251 3ot5_A UDP-N-acetylglucosamine 33.2 2.1E+02 0.0071 30.0 10.6 43 105-149 319-361 (403)
252 2w6r_A Imidazole glycerol phos 32.8 1E+02 0.0034 30.2 7.6 66 65-132 31-103 (266)
253 3c3y_A Pfomt, O-methyltransfer 32.8 1.5E+02 0.0052 28.4 8.9 59 30-88 92-156 (237)
254 2ewt_A BLDD, putative DNA-bind 32.6 34 0.0012 26.1 3.4 33 247-279 13-46 (71)
255 3llv_A Exopolyphosphatase-rela 31.4 1.1E+02 0.0038 26.5 6.9 93 32-131 28-122 (141)
256 1qop_A Tryptophan synthase alp 31.1 1.3E+02 0.0044 30.1 8.2 39 95-133 194-235 (268)
257 2o56_A Putative mandelate race 31.0 79 0.0027 33.4 6.9 79 65-145 227-309 (407)
258 3dr5_A Putative O-methyltransf 30.8 66 0.0022 31.0 5.8 68 30-101 78-149 (221)
259 2y88_A Phosphoribosyl isomeras 30.8 2.3E+02 0.0078 27.1 9.7 75 65-141 150-240 (244)
260 3p3b_A Mandelate racemase/muco 30.7 96 0.0033 32.7 7.5 75 65-143 213-295 (392)
261 2p10_A MLL9387 protein; putati 30.6 2.1E+02 0.0072 29.6 9.6 73 58-133 165-260 (286)
262 3vcn_A Mannonate dehydratase; 30.3 86 0.003 33.7 7.1 102 41-145 212-321 (425)
263 2jjm_A Glycosyl transferase, g 30.2 46 0.0016 33.8 4.7 66 80-149 285-350 (394)
264 1qdl_B Protein (anthranilate s 29.9 29 0.00098 32.9 2.9 50 34-85 1-51 (195)
265 2fym_A Enolase; RNA degradosom 29.9 95 0.0033 33.4 7.4 79 65-144 268-353 (431)
266 2avd_A Catechol-O-methyltransf 29.6 1.7E+02 0.0058 27.3 8.4 71 29-101 90-165 (229)
267 1thf_D HISF protein; thermophI 29.3 2E+02 0.007 27.6 9.1 66 65-132 31-103 (253)
268 3nav_A Tryptophan synthase alp 29.2 1.2E+02 0.0041 30.9 7.6 86 45-133 138-238 (271)
269 3khj_A Inosine-5-monophosphate 29.1 2.2E+02 0.0076 29.9 9.9 63 67-131 107-172 (361)
270 1vzw_A Phosphoribosyl isomeras 29.0 1.9E+02 0.0066 27.7 8.9 76 65-142 147-238 (244)
271 3mkc_A Racemase; metabolic pro 29.0 1E+02 0.0034 32.8 7.3 78 65-144 218-299 (394)
272 2v5j_A 2,4-dihydroxyhept-2-ENE 28.8 4.3E+02 0.015 26.8 11.7 95 49-145 30-132 (287)
273 4fo4_A Inosine 5'-monophosphat 28.7 2E+02 0.0069 30.5 9.5 63 67-131 110-176 (366)
274 2qgy_A Enolase from the enviro 28.4 89 0.0031 32.9 6.7 75 65-141 206-284 (391)
275 2qq6_A Mandelate racemase/muco 28.1 84 0.0029 33.3 6.5 78 65-144 222-303 (410)
276 2d00_A V-type ATP synthase sub 28.1 3E+02 0.01 24.0 9.5 72 33-110 3-76 (109)
277 1vrd_A Inosine-5'-monophosphat 28.0 3.2E+02 0.011 29.5 11.2 96 33-131 249-368 (494)
278 3ovp_A Ribulose-phosphate 3-ep 28.0 1.3E+02 0.0046 29.5 7.5 113 46-158 101-228 (228)
279 1sui_A Caffeoyl-COA O-methyltr 28.0 1.5E+02 0.0052 28.8 8.0 70 30-101 101-176 (247)
280 2vws_A YFAU, 2-keto-3-deoxy su 27.8 4.6E+02 0.016 26.1 11.9 95 49-145 9-111 (267)
281 4had_A Probable oxidoreductase 27.6 3.5E+02 0.012 27.3 10.9 108 30-148 20-135 (350)
282 3tfw_A Putative O-methyltransf 27.4 89 0.003 30.3 6.1 71 28-101 83-156 (248)
283 3l0g_A Nicotinate-nucleotide p 27.4 1E+02 0.0035 32.1 6.7 51 96-146 196-248 (300)
284 3tsm_A IGPS, indole-3-glycerol 27.3 2.8E+02 0.0097 28.2 10.0 82 46-131 158-248 (272)
285 1jvn_A Glutamine, bifunctional 26.8 3E+02 0.01 30.5 11.0 75 67-143 455-543 (555)
286 3nav_A Tryptophan synthase alp 26.7 58 0.002 33.2 4.7 51 95-145 85-145 (271)
287 4e38_A Keto-hydroxyglutarate-a 26.4 94 0.0032 31.1 6.1 93 36-133 39-155 (232)
288 1ypf_A GMP reductase; GUAC, pu 26.4 5.4E+02 0.018 26.4 13.5 87 41-131 132-238 (336)
289 1tc3_C Protein (TC3 transposas 26.3 49 0.0017 22.9 3.0 32 247-280 14-45 (51)
290 3inp_A D-ribulose-phosphate 3- 26.1 92 0.0031 31.3 6.0 80 65-146 41-130 (246)
291 1yxy_A Putative N-acetylmannos 25.9 2E+02 0.0068 27.5 8.3 70 57-131 133-214 (234)
292 3t76_A VANU, transcriptional r 25.9 38 0.0013 28.5 2.6 33 245-278 27-59 (88)
293 1kbi_A Cytochrome B2, L-LCR; f 25.9 1.2E+02 0.004 33.7 7.3 37 95-131 332-370 (511)
294 3ddm_A Putative mandelate race 25.8 1.1E+02 0.0039 32.3 7.0 79 65-144 211-293 (392)
295 1x1o_A Nicotinate-nucleotide p 25.6 1.2E+02 0.0042 31.1 6.9 90 36-129 169-265 (286)
296 3vk5_A MOEO5; TIM barrel, tran 25.4 95 0.0032 32.2 6.0 53 80-133 200-257 (286)
297 4h83_A Mandelate racemase/muco 25.2 95 0.0032 32.8 6.2 71 64-135 220-294 (388)
298 3ceu_A Thiamine phosphate pyro 25.1 85 0.0029 30.1 5.4 67 61-131 93-171 (210)
299 2pju_A Propionate catabolism o 25.0 4.2E+02 0.014 26.0 10.5 53 33-85 12-69 (225)
300 2v82_A 2-dehydro-3-deoxy-6-pho 25.0 1.4E+02 0.0047 28.3 6.8 75 52-132 96-176 (212)
301 2ovl_A Putative racemase; stru 24.9 99 0.0034 32.2 6.2 76 65-142 203-282 (371)
302 1fse_A GERE; helix-turn-helix 24.9 92 0.0032 23.9 4.7 24 245-269 17-40 (74)
303 1me8_A Inosine-5'-monophosphat 24.9 2.4E+02 0.0083 30.8 9.6 96 33-131 254-380 (503)
304 2fhp_A Methylase, putative; al 24.7 3.6E+02 0.012 23.8 9.6 68 34-101 68-138 (187)
305 2ox4_A Putative mandelate race 24.6 1.2E+02 0.0043 31.8 7.0 78 65-144 221-302 (403)
306 3rr1_A GALD, putative D-galact 24.2 1.2E+02 0.0041 32.4 6.8 79 65-145 190-272 (405)
307 3s28_A Sucrose synthase 1; gly 24.2 2.4E+02 0.0081 33.1 9.8 110 33-149 603-730 (816)
308 2a6c_A Helix-turn-helix motif; 24.0 60 0.0021 26.1 3.5 32 246-278 22-53 (83)
309 2pa6_A Enolase; glycolysis, ly 24.0 94 0.0032 33.3 6.0 79 65-144 268-351 (427)
310 2qfm_A Spermine synthase; sper 23.9 1.3E+02 0.0046 32.0 7.0 56 34-89 212-277 (364)
311 3qq6_A HTH-type transcriptiona 23.9 47 0.0016 26.6 2.8 30 248-278 16-45 (78)
312 1jcn_A Inosine monophosphate d 23.8 1.6E+02 0.0054 32.2 7.9 64 66-131 256-323 (514)
313 3l4e_A Uncharacterized peptida 23.8 2.7E+02 0.0092 26.8 8.7 62 33-102 27-98 (206)
314 3ctl_A D-allulose-6-phosphate 23.8 1.3E+02 0.0046 29.6 6.6 79 65-146 14-102 (231)
315 3tqv_A Nicotinate-nucleotide p 23.6 1.4E+02 0.0046 31.0 6.8 51 96-146 187-239 (287)
316 3dip_A Enolase; structural gen 23.6 1.1E+02 0.0037 32.7 6.3 76 64-141 224-304 (410)
317 2o8x_A Probable RNA polymerase 23.5 75 0.0026 24.2 3.8 26 246-271 22-47 (70)
318 3sr7_A Isopentenyl-diphosphate 23.4 1.1E+02 0.0039 32.4 6.4 65 65-131 156-236 (365)
319 3oy2_A Glycosyltransferase B73 23.4 2.7E+02 0.0092 28.1 9.1 74 66-148 264-354 (413)
320 3u81_A Catechol O-methyltransf 23.3 1.1E+02 0.0039 28.7 5.8 61 30-90 80-145 (221)
321 3toy_A Mandelate racemase/muco 23.2 1.5E+02 0.0051 31.3 7.3 78 65-144 225-306 (383)
322 1r69_A Repressor protein CI; g 23.2 51 0.0017 24.8 2.8 33 246-279 5-37 (69)
323 1zug_A Phage 434 CRO protein; 23.2 51 0.0017 25.0 2.8 34 245-279 6-39 (71)
324 1qb3_A Cyclin-dependent kinase 23.1 17 0.0006 34.1 0.0 15 320-334 46-60 (150)
325 3jva_A Dipeptide epimerase; en 22.9 1.9E+02 0.0065 30.0 7.9 75 64-140 194-272 (354)
326 1z0s_A Probable inorganic poly 22.8 37 0.0013 34.9 2.4 93 33-148 29-122 (278)
327 3sjn_A Mandelate racemase/muco 22.7 1.1E+02 0.0039 31.9 6.3 77 66-144 207-287 (374)
328 1mdl_A Mandelate racemase; iso 22.6 94 0.0032 32.1 5.5 78 65-144 201-282 (359)
329 4avf_A Inosine-5'-monophosphat 22.6 1.9E+02 0.0064 31.7 8.1 63 67-131 231-297 (490)
330 1h1y_A D-ribulose-5-phosphate 22.4 76 0.0026 30.8 4.5 80 53-132 109-201 (228)
331 4fxs_A Inosine-5'-monophosphat 22.3 1.6E+02 0.0055 32.3 7.5 62 68-131 234-299 (496)
332 3ik4_A Mandelate racemase/muco 22.3 1.5E+02 0.0051 31.0 7.0 78 64-144 198-281 (365)
333 3c6k_A Spermine synthase; sper 22.2 1.8E+02 0.0063 31.2 7.7 57 34-90 229-295 (381)
334 3euw_A MYO-inositol dehydrogen 22.1 6.1E+02 0.021 25.4 11.6 102 33-146 4-112 (344)
335 2kpj_A SOS-response transcript 22.1 76 0.0026 26.0 3.8 33 245-278 12-44 (94)
336 1rd5_A Tryptophan synthase alp 22.0 1.2E+02 0.0042 29.8 6.0 39 94-132 189-230 (262)
337 2hnk_A SAM-dependent O-methylt 22.0 3.4E+02 0.012 25.6 9.1 60 30-89 82-157 (239)
338 1jhf_A LEXA repressor; LEXA SO 21.7 49 0.0017 31.2 2.9 32 249-280 17-50 (202)
339 3omt_A Uncharacterized protein 21.6 30 0.001 26.9 1.1 33 246-279 12-44 (73)
340 3lp8_A Phosphoribosylamine-gly 21.6 2.2E+02 0.0076 30.3 8.3 57 28-86 16-90 (442)
341 3v3w_A Starvation sensing prot 21.5 1E+02 0.0036 33.0 5.7 78 65-144 238-319 (424)
342 3gnn_A Nicotinate-nucleotide p 21.5 5.6E+02 0.019 26.5 11.0 115 4-129 135-278 (298)
343 1je8_A Nitrate/nitrite respons 21.5 1.1E+02 0.0037 24.9 4.6 24 245-269 27-50 (82)
344 2pyy_A Ionotropic glutamate re 21.3 2.2E+02 0.0076 25.4 7.2 49 32-87 111-159 (228)
345 2jt1_A PEFI protein; solution 21.1 53 0.0018 27.3 2.6 25 255-280 24-48 (77)
346 4dxk_A Mandelate racemase / mu 20.9 1.3E+02 0.0046 31.8 6.4 78 65-144 222-303 (400)
347 1x57_A Endothelial differentia 20.8 89 0.003 25.3 4.0 33 246-279 17-49 (91)
348 3usb_A Inosine-5'-monophosphat 20.8 2.1E+02 0.0072 31.5 8.1 63 67-131 258-324 (511)
349 3vnd_A TSA, tryptophan synthas 20.7 2.4E+02 0.0084 28.5 8.0 98 34-133 124-236 (267)
350 2b5a_A C.BCLI; helix-turn-heli 20.7 60 0.0021 25.1 2.8 30 248-278 16-45 (77)
351 2fli_A Ribulose-phosphate 3-ep 20.6 1.8E+02 0.0061 27.4 6.7 102 46-147 98-218 (220)
352 3cni_A Putative ABC type-2 tra 20.6 1.6E+02 0.0054 26.5 6.0 51 31-85 8-61 (156)
353 2pgw_A Muconate cycloisomerase 20.5 1.4E+02 0.0048 31.2 6.3 74 65-140 202-279 (384)
354 3ezy_A Dehydrogenase; structur 20.4 6.3E+02 0.022 25.3 11.2 44 105-148 65-113 (344)
355 3s5s_A Mandelate racemase/muco 20.4 2.2E+02 0.0076 30.0 7.9 77 65-144 200-282 (389)
356 1tqx_A D-ribulose-5-phosphate 20.3 1.3E+02 0.0044 29.7 5.6 80 52-132 109-201 (227)
357 3qtp_A Enolase 1; glycolysis, 20.2 1.2E+02 0.0043 33.1 5.9 80 65-145 280-365 (441)
358 2r1j_L Repressor protein C2; p 20.2 49 0.0017 24.8 2.1 33 245-278 8-40 (68)
359 2xi8_A Putative transcription 20.2 44 0.0015 24.9 1.8 32 246-278 5-36 (66)
360 1neq_A DNA-binding protein NER 20.1 61 0.0021 26.3 2.7 32 244-276 11-42 (74)
361 3bjs_A Mandelate racemase/muco 20.1 1E+02 0.0036 33.0 5.3 74 65-140 241-319 (428)
362 4hpn_A Putative uncharacterize 20.1 1.7E+02 0.0057 30.5 6.8 78 64-143 199-280 (378)
363 3l9w_A Glutathione-regulated p 20.1 1.5E+02 0.0053 31.6 6.7 92 32-131 26-121 (413)
364 1y7y_A C.AHDI; helix-turn-heli 20.1 64 0.0022 24.6 2.8 31 247-278 18-48 (74)
365 1f0k_A MURG, UDP-N-acetylgluco 20.1 1.6E+02 0.0055 29.1 6.5 59 80-146 255-322 (364)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.89 E-value=6.5e-23 Score=190.68 Aligned_cols=119 Identities=28% Similarity=0.553 Sum_probs=107.4
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---
Q 006006 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--- 104 (665)
Q Consensus 29 ~fP~girVLIVDDD~~ire~Lk~lL~~~gy~-V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~--- 104 (665)
.+.+.+|||||||++..|+.++.+|+..||. |.+|.+|.+|++++++.. |||||+|++||+|||++++++||..
T Consensus 8 ~m~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~--~DlillD~~MP~mdG~el~~~ir~~~~~ 85 (134)
T 3to5_A 8 ILNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGD--FDFVVTDWNMPGMQGIDLLKNIRADEEL 85 (134)
T ss_dssp -CCTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTT
T ss_pred HhCCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCC
Confidence 3457799999999999999999999999985 778999999999999887 9999999999999999999999853
Q ss_pred CCccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 105 MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 105 ~~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
.++||| ++.+.+...+|++.||++||.||++.++|.+.+++++++
T Consensus 86 ~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 86 KHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp TTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 578888 677888999999999999999999999999999987643
No 2
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.84 E-value=2.4e-20 Score=181.46 Aligned_cols=141 Identities=27% Similarity=0.415 Sum_probs=102.1
Q ss_pred HHhcCC-------CCCcceeeeeccCCC-------------CCCCccEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCH
Q 006006 8 VQSSGG-------SGYGSSRAADVAVPD-------------QFPAGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQA 66 (665)
Q Consensus 8 V~~mgG-------sg~Gs~f~~~~~~~d-------------~fP~girVLIVDDD~~ire~Lk~lL~~~gy-~V~tAsng 66 (665)
.-+||| .|.|++|++.+|... ....+++||||||++..+..++.+|+..++ .|..+.++
T Consensus 16 ~~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~ 95 (206)
T 3mm4_A 16 RGSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSG 95 (206)
T ss_dssp ---------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSH
T ss_pred ccccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCH
Confidence 357999 399999999998731 122467999999999999999999999998 89999999
Q ss_pred HHHHHHHHHc-----------CCCceEEEEeCCCCCCCHHHHHHHHhcc-----CCccEE---ecC-chHHHHHHHHcCC
Q 006006 67 AVALDILRER-----------KGCFDVVLSDVHMPDMDGFKLLEHIGLE-----MDLPVI---TDG-RVSAVMRGIRHGA 126 (665)
Q Consensus 67 eEALelLre~-----------k~~PDLVIlDI~MP~mDGlELLe~Ir~~-----~~IPVI---a~s-d~e~a~kALe~GA 126 (665)
.+|++.+++. ...|||||+|+.||++||++++++|+.. +.+||| ++. +.+.+.++++.||
T Consensus 96 ~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga 175 (206)
T 3mm4_A 96 KEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGM 175 (206)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTC
T ss_pred HHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCC
Confidence 9999999875 1139999999999999999999999763 678887 344 6678889999999
Q ss_pred CeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 127 CDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 127 ~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
++||.||++ +|..+|+++++++
T Consensus 176 ~~~l~KP~~--~L~~~i~~~l~~~ 197 (206)
T 3mm4_A 176 DAFLDKSLN--QLANVIREIESKR 197 (206)
T ss_dssp SEEEETTCT--THHHHHHHHC---
T ss_pred CEEEcCcHH--HHHHHHHHHHhhh
Confidence 999999999 8999998887655
No 3
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.82 E-value=2.2e-19 Score=178.45 Aligned_cols=167 Identities=28% Similarity=0.387 Sum_probs=124.1
Q ss_pred cceeeeeccCCCC------CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCC
Q 006006 17 GSSRAADVAVPDQ------FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP 90 (665)
Q Consensus 17 Gs~f~~~~~~~d~------fP~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP 90 (665)
||+|...+++... ....++||||||++..+..++.+|+..+|.|..+.++++|++.++... ||+||+|+.||
T Consensus 1 Gs~~~~~~~~~~~~~~~~~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~lp 78 (250)
T 3r0j_A 1 GTHMRKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETR--PDAVILDVXMP 78 (250)
T ss_dssp -------------------CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCS
T ss_pred CCccccccceeeccCCCCCCCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCC
Confidence 5667666654221 224589999999999999999999999999999999999999999877 99999999999
Q ss_pred CCCHHHHHHHHhcc-CCccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccccccc-------
Q 006006 91 DMDGFKLLEHIGLE-MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN------- 159 (665)
Q Consensus 91 ~mDGlELLe~Ir~~-~~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~~------- 159 (665)
++||++++++|+.. +.+||| +..+.+...+|++.||++||.||++.++|..+++.++++..........
T Consensus 79 ~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (250)
T 3r0j_A 79 GMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKGNKEPRNVRLTFAD 158 (250)
T ss_dssp SSCHHHHHHHHHHTTCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHCC------CCEEEETT
T ss_pred CCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhccccccccceEEEECC
Confidence 99999999999764 578877 5677788899999999999999999999999999998764322110000
Q ss_pred -------cCCccccccCCCChhhHHHHHhhccC
Q 006006 160 -------SGSLEETDHHKRGSDEIEYASSVNEG 185 (665)
Q Consensus 160 -------~~~le~~~~~~Lt~rEie~Lesl~eG 185 (665)
...........++.+|.+++..+..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~LT~rE~~iL~~l~~~ 191 (250)
T 3r0j_A 159 IELDEETHEVWKAGQPVSLSPTEFTLLRYFVIN 191 (250)
T ss_dssp EEEETTTCCEEETTEEECCCHHHHHHHHHHHHT
T ss_pred EEEeccccEEEECCEEEecCHHHHHHHHHHHHC
Confidence 00001112346899999999888655
No 4
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.81 E-value=2.9e-19 Score=157.17 Aligned_cols=113 Identities=29% Similarity=0.470 Sum_probs=104.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI--- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI--- 110 (665)
.+||||||++..+..++.+|+..+|.|..+.++.+|++.+++.. ||+||+|+.||+++|++++++++....+|+|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t 80 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQ--PDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLT 80 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTC--CSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999999999999999999999999998776 9999999999999999999999877778877
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
+..+.....++++.||++||.||++.++|..+++++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 81 AKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp ESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 56777788899999999999999999999999988764
No 5
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.81 E-value=3.3e-19 Score=157.60 Aligned_cols=113 Identities=27% Similarity=0.421 Sum_probs=103.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCccEE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IPVI 110 (665)
.+||||||++..+..++.+|+..+|.|..+.++.+|++.+++.. ||+||+|+.||++||++++++++.. +.+|||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~--~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFT--PDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBC--CSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 58999999999999999999999999999999999999998776 9999999999999999999999754 568877
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
+..+.+...++++.||++||.||++.++|...++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 45678888999999999999999999999999988763
No 6
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.81 E-value=7e-19 Score=158.29 Aligned_cols=116 Identities=31% Similarity=0.527 Sum_probs=105.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCccE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IPV 109 (665)
..+||||||++..+..++.+|+..+|.|..+.++++|++.+++.. ||+||+|+.||++||++++++++.. ..+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNL--PDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 469999999999999999999999999999999999999998876 9999999999999999999999753 56787
Q ss_pred E---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
| +..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 7 5667788889999999999999999999999999988754
No 7
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.80 E-value=1.1e-18 Score=168.30 Aligned_cols=165 Identities=18% Similarity=0.291 Sum_probs=130.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCcc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLP 108 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~-gy~V-~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IP 108 (665)
..++||||||++..+..++.+|+.. ++.+ ..+.++.+|++.++... ||+||+|+.||+++|+++++.++.. +.+|
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ 81 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKSLSGR 81 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEEETTSTTSCHHHHHHHHHHSCCCSE
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 4579999999999999999999986 4777 78999999999999877 9999999999999999999999754 5677
Q ss_pred EE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhcccccc--------ccCCccccccCCCChhhHH
Q 006006 109 VI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE--------NSGSLEETDHHKRGSDEIE 177 (665)
Q Consensus 109 VI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~--------~~~~le~~~~~~Lt~rEie 177 (665)
|| ...+.+...++++.||++||.||++.++|..++++++++......... ............++.+|.+
T Consensus 82 ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~ 161 (215)
T 1a04_A 82 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERD 161 (215)
T ss_dssp EEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHC-------CCCGGGSCHHHHH
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCeecCHHHHHHHHHHhcccccCCCccccCCCHHHHH
Confidence 76 567788899999999999999999999999999999886432211100 0000011223468999999
Q ss_pred HHHhhccCCchhHHHHHhhcc
Q 006006 178 YASSVNEGTEGTFKAQRKRIS 198 (665)
Q Consensus 178 ~Lesl~eGse~~lka~~k~Is 198 (665)
++..+.+|..+...+....++
T Consensus 162 vl~~l~~g~s~~~Ia~~l~is 182 (215)
T 1a04_A 162 ILKLIAQGLPNKMIARRLDIT 182 (215)
T ss_dssp HHHHHHTTCCHHHHHHHHTCC
T ss_pred HHHHHHcCCCHHHHHHHHCCC
Confidence 999999998776666555443
No 8
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.80 E-value=3.5e-21 Score=176.94 Aligned_cols=111 Identities=27% Similarity=0.396 Sum_probs=97.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccE
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~~gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPV 109 (665)
.+.+|||||||++.++..++.+|+..||.|. +|.++++|++++++.+ ||+||+|++||+|||+++++++++ .++||
T Consensus 6 ~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~--~DlvllDi~mP~~~G~el~~~lr~-~~ipv 82 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQ--FDIAIIDVNLDGEPSYPVADILAE-RNVPF 82 (123)
T ss_dssp CCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCC--SSEEEECSSSSSCCSHHHHHHHHH-TCCSS
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHc-CCCCE
Confidence 4678999999999999999999999999975 8999999999999877 999999999999999999999986 46887
Q ss_pred E---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vl 147 (665)
| ++.+... +.++|+++||.||++.++|..+++++.
T Consensus 83 I~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 83 IFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred EEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 7 4444332 346799999999999999999887654
No 9
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.79 E-value=1e-18 Score=156.71 Aligned_cols=115 Identities=23% Similarity=0.424 Sum_probs=101.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHH-----cCCCceEEEEeCCCCCCCHHHHHHHHhc--c
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRE-----RKGCFDVVLSDVHMPDMDGFKLLEHIGL--E 104 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy-~V~tAsngeEALelLre-----~k~~PDLVIlDI~MP~mDGlELLe~Ir~--~ 104 (665)
.++||||||++..+..++.+|+..++ .|..+.++.+|++.++. .. ||+||+|+.||++||++++++++. .
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~~ 79 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGEN--YNMIFMDVQMPKVDGLLSTKMIRRDLG 79 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCC--CSEEEECSCCSSSCHHHHHHHHHHHSC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCC--CCEEEEeCCCCCCChHHHHHHHHhhcC
Confidence 47899999999999999999998886 58899999999999986 44 999999999999999999999975 3
Q ss_pred CCccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 105 MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 105 ~~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
..+||| ++.+.+...++++.||++||.||++.++|..++++++..
T Consensus 80 ~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 80 YTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp CCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 467777 566778889999999999999999999999999887543
No 10
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.79 E-value=5.1e-19 Score=168.02 Aligned_cols=117 Identities=21% Similarity=0.330 Sum_probs=107.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE-
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI- 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI- 110 (665)
+++||||||++..+..++.+|...+|.|..|.++.+|++.++... ||+||+|+.||++||++++++++. .+.+|||
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 84 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEK--FEFITVXLHLGNDSGLSLIAPLCDLQPDARILV 84 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSC--CSEEEECSEETTEESHHHHHHHHHHCTTCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeccCCCccHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999999999999999999999998766 999999999999999999999975 4678877
Q ss_pred --ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 111 --TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 111 --a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
++.+.+.+.+|++.||++||.||++.++|..+++++++...
T Consensus 85 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~ 127 (184)
T 3rqi_A 85 LTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQ 127 (184)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred EeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence 56778889999999999999999999999999998877654
No 11
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.78 E-value=9.3e-19 Score=175.23 Aligned_cols=151 Identities=26% Similarity=0.341 Sum_probs=125.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE--
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI-- 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI-- 110 (665)
.++||||||++..+..|+.+|+..++.|..+.++.+|++.+.... |||||+|+.||++||++++++|+..+.+|||
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~l 114 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDH--PDLILLDLGLPDFDGGDVVQRLRKNSALPIIVL 114 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 379999999999999999999999999999999999999998876 9999999999999999999999887788887
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccccccc-------cCCccccccCCCChhhHHHHHhh
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN-------SGSLEETDHHKRGSDEIEYASSV 182 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~~-------~~~le~~~~~~Lt~rEie~Lesl 182 (665)
+..+.+.+.+|++.||++||.||++.++|..+++.++++.......... ...........++.+|.+++..+
T Consensus 115 t~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~evL~ll 194 (249)
T 3q9s_A 115 TARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRTSESLSMGDLTLDPQKRLVTYKGEELRLSPKEFDILALL 194 (249)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCCSCCEEETTEEEETTTTEEEETTEEECCCHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcccCceeECCEEEecccCEEEECCEEeecCHHHHHHHHHH
Confidence 5677888999999999999999999999999999998765322111000 00001122346899999999999
Q ss_pred ccC
Q 006006 183 NEG 185 (665)
Q Consensus 183 ~eG 185 (665)
.++
T Consensus 195 ~~g 197 (249)
T 3q9s_A 195 IRQ 197 (249)
T ss_dssp HHS
T ss_pred HHC
Confidence 887
No 12
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.78 E-value=7.9e-19 Score=168.23 Aligned_cols=164 Identities=23% Similarity=0.324 Sum_probs=130.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE-
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI- 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI- 110 (665)
..+||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 81 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQ--HGCLVLDMRMPGMSGIELQEQLTAISDGIPIVF 81 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTS--CEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 469999999999999999999998999999999999999987665 9999999999999999999999754 678877
Q ss_pred --ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccccccccCCccccccCCCChhhHHHHHhhccCCch
Q 006006 111 --TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEG 188 (665)
Q Consensus 111 --a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~~~~~le~~~~~~Lt~rEie~Lesl~eGse~ 188 (665)
++.+.+...+|++.||++||.||++.++|..++++++++............ ........++.+|.+++..+.+|..+
T Consensus 82 ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~Lt~rE~~vl~~l~~g~s~ 160 (208)
T 1yio_A 82 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQARETQD-QLEQLFSSLTGREQQVLQLTIRGLMN 160 (208)
T ss_dssp EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSCHHHHHHHHHHTTTCCH
T ss_pred EeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHcCCcH
Confidence 456667788999999999999999999999999998876432211110000 00112245889999999988888766
Q ss_pred hHHHHHhhccc
Q 006006 189 TFKAQRKRISA 199 (665)
Q Consensus 189 ~lka~~k~Is~ 199 (665)
...+....++.
T Consensus 161 ~~Ia~~l~is~ 171 (208)
T 1yio_A 161 KQIAGELGIAE 171 (208)
T ss_dssp HHHHHHHTCCH
T ss_pred HHHHHHcCCCH
Confidence 66655544443
No 13
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.78 E-value=3.3e-18 Score=155.48 Aligned_cols=117 Identities=26% Similarity=0.438 Sum_probs=100.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-----cC
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-----EM 105 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-----~~ 105 (665)
.+.++||||||++..+..++.+|+..++.|..+.++++|++.++... ||+||+|+.||++||++++++++. ..
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~ 89 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEED--YDAVIVDLHMPGMNGLDMLKQLRVMQASGMR 89 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHHHTTCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhccCC
Confidence 35689999999999999999999998999999999999999998876 999999999999999999999973 24
Q ss_pred CccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 106 DLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 106 ~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
.+|+| +..+.+...++++.||++||.||++.++|..+++++...
T Consensus 90 ~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 90 YTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 56776 456778888999999999999999999999999887544
No 14
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.77 E-value=6.5e-18 Score=150.00 Aligned_cols=115 Identities=28% Similarity=0.540 Sum_probs=102.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCcc
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~-V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IP 108 (665)
.++||||||++..++.++.+|+..++. +..+.++.+|++.+.... .||+||+|+.||+++|++++++++.. +.+|
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~-~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~p 83 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANA-DTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIP 83 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCT-TCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe
Confidence 479999999999999999999998885 889999999999887652 39999999999999999999999753 4678
Q ss_pred EE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 109 VI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 109 VI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
|| +..+.....++++.||++||.||++.++|..+++.++.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 84 IIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp EEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred EEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 77 45677788899999999999999999999999998764
No 15
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.77 E-value=7e-18 Score=154.87 Aligned_cols=119 Identities=25% Similarity=0.388 Sum_probs=108.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCcc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IP 108 (665)
.+++||||||++..+..++.+|+..+|.|..+.++.+|++.+++.. ||+||+|+.||+++|+++++.|+.. +.+|
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTR--PDLIISDVLMPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCC
Confidence 4589999999999999999999999999999999999999998766 9999999999999999999999864 5778
Q ss_pred EE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhh
Q 006006 109 VI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 152 (665)
Q Consensus 109 VI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~ 152 (665)
|| ...+.+...++++.||++||.||++.++|..++++++++...
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred EEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 77 457788889999999999999999999999999999887643
No 16
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.77 E-value=1.2e-17 Score=144.99 Aligned_cols=115 Identities=27% Similarity=0.390 Sum_probs=104.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE--
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI-- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI-- 110 (665)
++||||||++..+..++.+|...++.|..+.++.+|++.++... ||+||+|+.||+++|++++++++.. +.+|+|
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHI--PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999998999999999999999998876 9999999999999999999999753 567877
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+.....++++.||++||.||++.++|...+++++++.
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 4566778889999999999999999999999999887653
No 17
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.77 E-value=1.3e-17 Score=145.50 Aligned_cols=115 Identities=21% Similarity=0.363 Sum_probs=104.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI--- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI--- 110 (665)
.+||||||++..+..++.+|...++.+..+.++.++++.++... ||+||+|+.||+++|+++++.+++.+.+|+|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s 80 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQS--VDLILLDINLPDENGLMLTRALRERSTVGIILVT 80 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCC--CCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999999988999999999999999998776 9999999999999999999999876778877
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+.+...++++.||++||.||++.++|...+++++++.
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 120 (122)
T 1zgz_A 81 GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 4567777889999999999999999999999999887653
No 18
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.77 E-value=1.1e-17 Score=149.18 Aligned_cols=117 Identities=25% Similarity=0.372 Sum_probs=106.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE-
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI- 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI- 110 (665)
.++||||||++..+..++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+|+|
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEF--FNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhCCCCcEEE
Confidence 369999999999999999999988999999999999999998876 999999999999999999999975 4677877
Q ss_pred --ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 111 --TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 111 --a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
...+.+...++++.||++||.||++.++|..++++++++..
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 123 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQE 123 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhccc
Confidence 45677888899999999999999999999999999887653
No 19
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.77 E-value=9.5e-18 Score=145.16 Aligned_cols=114 Identities=24% Similarity=0.450 Sum_probs=103.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI--- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI--- 110 (665)
.+||||||++..+..++.+|...++.|..+.++.+|++.++... ||+||+|+.||+++|+++++++++.+.+|+|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQ--PDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLS 79 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCC--CCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEe
Confidence 48999999999999999999988999999999999999998876 9999999999999999999999876778877
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
...+.....++++.||++||.||++.++|...+++++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 80 AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 455667788899999999999999999999999887653
No 20
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.76 E-value=9.6e-18 Score=152.80 Aligned_cols=120 Identities=19% Similarity=0.286 Sum_probs=104.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHHc-----CCCceEEEEeCCCCCCCHHHHHHHHhc
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRER-----KGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~~gy--~V~tAsngeEALelLre~-----k~~PDLVIlDI~MP~mDGlELLe~Ir~ 103 (665)
...++||||||++..+..++.+|+..++ .|..+.++.+|++.++.. ...||+||+|+.||+++|+++++.|+.
T Consensus 6 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~ 85 (149)
T 1i3c_A 6 NPPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQ 85 (149)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHH
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 4568999999999999999999998776 788999999999999752 124999999999999999999999976
Q ss_pred c---CCccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 104 E---MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 104 ~---~~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
. +.+||| +..+.+.+.++++.||++||.||++.++|..+++++.+..
T Consensus 86 ~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 86 NPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp CTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 4 467877 4556778889999999999999999999999999987654
No 21
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.76 E-value=1.4e-17 Score=145.39 Aligned_cols=115 Identities=21% Similarity=0.402 Sum_probs=104.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI--- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI--- 110 (665)
.+||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++++..+.+|+|
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 81 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 58999999999999999999988999999999999999998876 9999999999999999999999866777877
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+.....++++.||++||.||++.++|...+++++++.
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 4566777889999999999999999999999999887653
No 22
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.76 E-value=7.2e-18 Score=163.12 Aligned_cols=151 Identities=23% Similarity=0.404 Sum_probs=123.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE-
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI- 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI- 110 (665)
+++||||||++..+..++.+|...++.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 379999999999999999999998999999999999999998876 9999999999999999999999754 678877
Q ss_pred --ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccccccccCC----------ccccccCCCChhhHHH
Q 006006 111 --TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGS----------LEETDHHKRGSDEIEY 178 (665)
Q Consensus 111 --a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~~~~~----------le~~~~~~Lt~rEie~ 178 (665)
+..+.+...++++.||++||.||++.++|..+++.++++............. ........++.+|.++
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~v 159 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQI 159 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHCCSCSSEEEETTEEEETTTTEEEETTEEECCCHHHHHH
T ss_pred EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcccccCceEEECCEEEecccCEEEECCEEEecCHHHHHH
Confidence 4566778889999999999999999999999999998875432211000000 0011223589999999
Q ss_pred HHhhccC
Q 006006 179 ASSVNEG 185 (665)
Q Consensus 179 Lesl~eG 185 (665)
+..+.++
T Consensus 160 L~~l~~~ 166 (225)
T 1kgs_A 160 LEYLVMN 166 (225)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 9888777
No 23
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.76 E-value=9.2e-18 Score=150.97 Aligned_cols=116 Identities=21% Similarity=0.364 Sum_probs=105.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE--
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI-- 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI-- 110 (665)
.++||||||++..+..++.+|...++.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+....+|||
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~l 81 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNK--YDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYM 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEE
Confidence 479999999999999999999988999999999999999998876 9999999999999999999999865577777
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+.+.+.++++.||++||.||++.++|..++++++++.
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 122 (136)
T 2qzj_A 82 TYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp ESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 4567778899999999999999999999999999987764
No 24
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.76 E-value=1.3e-17 Score=146.87 Aligned_cols=115 Identities=25% Similarity=0.441 Sum_probs=104.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE-
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI- 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI- 110 (665)
..+||||||++..+..++.+|...++.+..+.++.++++.+.... ||+||+|+.||+++|++++++++.. +.+|||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVR--NGVLVTDLRMPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCC--SEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 469999999999999999999988999999999999999998765 9999999999999999999999754 577877
Q ss_pred --ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 111 --TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 111 --a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
...+.+...++++.||++||.||++.++|..++++++++
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 456777889999999999999999999999999988654
No 25
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.76 E-value=2e-17 Score=150.99 Aligned_cols=121 Identities=28% Similarity=0.436 Sum_probs=109.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCcc
Q 006006 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLP 108 (665)
Q Consensus 30 fP~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IP 108 (665)
....++||||||++..+..++.+|...+|.|..+.++.+|++.+++.. |||||+|+.||+++|++++++|+.. +.+|
T Consensus 11 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 88 (153)
T 3hv2_A 11 VTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGPTLLARIHQQYPSTT 88 (153)
T ss_dssp CCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHCTTSE
T ss_pred ccCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCC--CCEEEEeCCCCcCcHHHHHHHHHhHCCCCe
Confidence 345689999999999999999999999999999999999999999876 9999999999999999999999753 6778
Q ss_pred EE---ecCchHHHHHHHHcC-CCeEEeCCCCHHHHHHHHHHHHHHhhh
Q 006006 109 VI---TDGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRWN 152 (665)
Q Consensus 109 VI---a~sd~e~a~kALe~G-A~DYLlKPv~~eEL~~aLq~Vlrk~~~ 152 (665)
|| ...+.+...++++.| |++||.||++.++|..++++++++...
T Consensus 89 ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~ 136 (153)
T 3hv2_A 89 RILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHS 136 (153)
T ss_dssp EEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHH
Confidence 77 566778889999999 999999999999999999999887643
No 26
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.75 E-value=1.2e-17 Score=146.43 Aligned_cols=113 Identities=24% Similarity=0.448 Sum_probs=102.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE--
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI-- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI-- 110 (665)
.+||||||++..+..++.+|...++.|..+.++.+|++.++... ||+||+|+.||+++|++++++++. .+.+|+|
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKER--PDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIM 81 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 58999999999999999999988999999999999999998876 999999999999999999999975 4677877
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
...+.+...++++.||++||.||++.++|..+++++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 82 TAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp ESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 45677788899999999999999999999999988753
No 27
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.75 E-value=9.3e-18 Score=147.70 Aligned_cols=117 Identities=26% Similarity=0.455 Sum_probs=104.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CC
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MD 106 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~~gy-~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~ 106 (665)
...++||||||++..+..++.+|...++ .|..+.++++|++.++... ||+||+|+.||+++|++++++++.. +.
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ 81 (129)
T 1p6q_A 4 AEKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNP--HHLVISDFNMPKMDGLGLLQAVRANPATKK 81 (129)
T ss_dssp SSCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSC--CSEEEECSSSCSSCHHHHHHHHTTCTTSTT
T ss_pred cccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCC--CCEEEEeCCCCCCCHHHHHHHHhcCccccC
Confidence 3457999999999999999999998888 7889999999999998765 9999999999999999999999764 56
Q ss_pred ccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 107 LPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 107 IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
+|+| ...+.+...++++.||++||.||++.++|..++++++++
T Consensus 82 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 82 AAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp CEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 7877 456677788999999999999999999999999988653
No 28
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.75 E-value=1.7e-17 Score=143.84 Aligned_cols=115 Identities=27% Similarity=0.365 Sum_probs=104.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI--- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI--- 110 (665)
++||||||++..+..++.+|...++.+..+.++.+++..+.... ||+||+|+.||+++|++++++++..+.+|+|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLS 79 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEE
Confidence 68999999999999999999988999999999999999998776 9999999999999999999999866778877
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+.....++++.||++||.||++.++|...+++++++.
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 4566777889999999999999999999999999887653
No 29
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.75 E-value=2.3e-17 Score=145.03 Aligned_cols=116 Identities=31% Similarity=0.533 Sum_probs=104.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy-~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~---~~~I 107 (665)
..++||||||++..+..++.+|...++ .|..+.++.+|++.++... ||+||+|+.||+++|++++++++. .+.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG--YGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCC--CCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 458999999999999999999998888 7899999999999997665 999999999999999999999985 2467
Q ss_pred cEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 108 PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 108 PVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
|+| ...+.+...++++.||++||.||++.++|..++++++++
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 777 456677888999999999999999999999999998764
No 30
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.75 E-value=1.6e-17 Score=148.00 Aligned_cols=119 Identities=20% Similarity=0.352 Sum_probs=108.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI 110 (665)
..++||||||++..+..++.+|...++.|..+.++++|++.+++.. ||+||+|+.||+++|++++++|+.. +.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHA--PDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 4689999999999999999999998899999999999999999887 9999999999999999999999754 567777
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhh
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 152 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~ 152 (665)
...+.+...++++.||++||.||++.++|..++++++++...
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLA 128 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhc
Confidence 456777888999999999999999999999999999887643
No 31
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.75 E-value=9.2e-18 Score=163.25 Aligned_cols=150 Identities=23% Similarity=0.325 Sum_probs=122.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI--- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI--- 110 (665)
++||||||++..+..++.+|...++.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++..+.+|||
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt 82 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAG--ADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVT 82 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEe
Confidence 69999999999999999999998999999999999999998876 9999999999999999999999876778887
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccc----cccccCC----------ccccccCCCChhhH
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENK----EHENSGS----------LEETDHHKRGSDEI 176 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k----~~~~~~~----------le~~~~~~Lt~rEi 176 (665)
...+.+...++++.||++||.||++.++|..++++++++...... ....... ........++.+|.
T Consensus 83 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~ 162 (230)
T 2oqr_A 83 ARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEF 162 (230)
T ss_dssp CCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTTTCTTSTTCCSCEEETTEEEETTTTEEEESSBCCCCCHHHH
T ss_pred CCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcccccccccccceeecCEEEeccccEEEECCeeeecCHHHH
Confidence 345566788999999999999999999999999999876422111 0000000 00122346899999
Q ss_pred HHHHhhccC
Q 006006 177 EYASSVNEG 185 (665)
Q Consensus 177 e~Lesl~eG 185 (665)
+++..+.++
T Consensus 163 ~vL~~l~~~ 171 (230)
T 2oqr_A 163 DLLEYLMRN 171 (230)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 999988776
No 32
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.75 E-value=1.7e-17 Score=144.30 Aligned_cols=113 Identities=27% Similarity=0.484 Sum_probs=101.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~-V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI 110 (665)
+++||||||++..+..++.+|+..+|. +..+.++.+|++.++... ||+||+|+.||+++|+++++++++ .+.+|+|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKII 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEECSCGGGCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEE
Confidence 368999999999999999999988998 568999999999998876 999999999999999999999975 4667777
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vl 147 (665)
...+.+...++++.||++||.||++.++|..++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 80 VCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 4567778889999999999999999999999988763
No 33
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.75 E-value=1e-17 Score=149.84 Aligned_cols=119 Identities=24% Similarity=0.380 Sum_probs=104.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCcc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~---~~~IP 108 (665)
..++||||||++..+..++.+|...++.|..+.++.+|++.+++.. ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRP--YAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 4579999999999999999999999999999999999999999877 999999999999999999999975 36788
Q ss_pred EE-e--cCchHHHH-HHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhh
Q 006006 109 VI-T--DGRVSAVM-RGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 152 (665)
Q Consensus 109 VI-a--~sd~e~a~-kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~ 152 (665)
|| . ..+.+... ++++.||++||.||++.++|..++++++++...
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 88 2 23334444 788999999999999999999999999987643
No 34
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.75 E-value=6e-18 Score=152.31 Aligned_cols=119 Identities=21% Similarity=0.286 Sum_probs=105.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHH-cCCCceEEEEeCCCCC-CCHHHHHHHHhccCCccE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPV 109 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre-~k~~PDLVIlDI~MP~-mDGlELLe~Ir~~~~IPV 109 (665)
.+++||||||++..+..++.+|...++.|..+.++.+|++.+.+ .. |||||+|+.||+ ++|+++++.++..+.+||
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~--~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~i 81 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWY--PDLILMDIELGEGMDGVQTALAIQQISELPV 81 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCC--CSEEEEESSCSSSCCHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCC--CCEEEEeccCCCCCCHHHHHHHHHhCCCCCE
Confidence 35799999999999999999999999999999999999999986 44 999999999995 999999999987788888
Q ss_pred E---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhh
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 152 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~ 152 (665)
| ...+.+...++++.||++||.||++.++|..++++++++...
T Consensus 82 i~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 127 (140)
T 3h5i_A 82 VFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEA 127 (140)
T ss_dssp EEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 7 445566677899999999999999999999999999887643
No 35
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.75 E-value=3.8e-17 Score=146.58 Aligned_cols=121 Identities=26% Similarity=0.441 Sum_probs=107.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE-
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI- 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI- 110 (665)
.++||||||++..+..++.+|...++.|..+.++.+|++.+......||+||+|+.||+++|++++++++. .+.+|||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVII 82 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 47999999999999999999999999999999999999999843234999999999999999999999975 3567777
Q ss_pred --ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhc
Q 006006 111 --TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNE 153 (665)
Q Consensus 111 --a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~ 153 (665)
...+.+...++++.||++||.||++.++|..++++++++....
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~ 127 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKLL 127 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 4567778889999999999999999999999999998876443
No 36
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.74 E-value=4.9e-18 Score=152.20 Aligned_cols=118 Identities=17% Similarity=0.279 Sum_probs=106.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHH-cCCCceEEEEeCCCC-CCCHHHHHHHHhc---cC
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMP-DMDGFKLLEHIGL---EM 105 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~-~gy~V~tAsngeEALelLre-~k~~PDLVIlDI~MP-~mDGlELLe~Ir~---~~ 105 (665)
..++||||||++..+..++.+|+. .++.|..+.++.+|++.+++ .. |||||+|+.|| +++|++++++|+. .+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~--~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDS--ITLIIMDIAFPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCC--CSEEEECSCSSSHHHHHHHHHHHHHSGGGT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCC--CcEEEEeCCCCCCCcHHHHHHHHHhCcccC
Confidence 457999999999999999999999 89999999999999999987 65 99999999999 9999999999976 46
Q ss_pred CccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 106 DLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 106 ~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
.+||| ...+.+...++++.||++||.||++.++|..++++++++..
T Consensus 81 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 78877 46677888999999999999999999999999999887653
No 37
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.74 E-value=1.1e-17 Score=164.82 Aligned_cols=150 Identities=24% Similarity=0.391 Sum_probs=122.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI--- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI--- 110 (665)
++||||||++..+..++.+|...++.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++....+|||
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt 83 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELR--PDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLT 83 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEe
Confidence 69999999999999999999998999999999999999998876 9999999999999999999999876678877
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhccccccccCCc----------cccccCCCChhhHHHHH
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSL----------EETDHHKRGSDEIEYAS 180 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~~~~~l----------e~~~~~~Lt~rEie~Le 180 (665)
+..+.+...++++.||++||.||++.++|..+++.++++.............. .......++.+|.+++.
T Consensus 84 ~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~~vL~ 163 (238)
T 2gwr_A 84 AKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDDEPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLV 163 (238)
T ss_dssp ETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCCSSCCCCEEEETTEEEETTTTEEEETTEEECCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhcccCcccceecCceEEcccccEEEECCEEcccCHHHHHHHH
Confidence 56677778899999999999999999999999999877642211110000000 01122458999999998
Q ss_pred hhccC
Q 006006 181 SVNEG 185 (665)
Q Consensus 181 sl~eG 185 (665)
.+.++
T Consensus 164 ~l~~~ 168 (238)
T 2gwr_A 164 ALARK 168 (238)
T ss_dssp HHHHS
T ss_pred HHHHC
Confidence 88877
No 38
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.74 E-value=2.2e-17 Score=147.38 Aligned_cols=115 Identities=20% Similarity=0.294 Sum_probs=102.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~g--y~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI 110 (665)
++||||||++..+..++.+|+..+ +.+..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~--~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii 81 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYN--PNVVILDIEMPGMTGLEVLAEIRKKHLNIKVI 81 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHHHCCCCcEE
Confidence 689999999999999999998765 56788999999999998876 999999999999999999999975 3678877
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+.+...++++.||++||.||++.++|..++++++++.
T Consensus 82 ~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 82 IVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred EEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 4567778899999999999999999999999999887654
No 39
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.74 E-value=3.5e-17 Score=144.62 Aligned_cols=119 Identities=19% Similarity=0.306 Sum_probs=105.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHHcC-----CCceEEEEeCCCCCCCHHHHHHHHhcc-
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERK-----GCFDVVLSDVHMPDMDGFKLLEHIGLE- 104 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy--~V~tAsngeEALelLre~k-----~~PDLVIlDI~MP~mDGlELLe~Ir~~- 104 (665)
+++||||||++..+..++.+|...++ .|..+.++.+|++.+++.. ..||+||+|+.||+++|+++++.++..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 57999999999999999999999888 8999999999999998610 239999999999999999999999865
Q ss_pred --CCccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 105 --MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 105 --~~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
+.+||| ...+.+...++++.||++||.||++.++|..+++++++...
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHc
Confidence 467777 45667788899999999999999999999999999987653
No 40
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.74 E-value=1.8e-17 Score=144.61 Aligned_cols=113 Identities=22% Similarity=0.399 Sum_probs=98.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCccEE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IPVI 110 (665)
.+||||||++..+..++.+|+..++.+..+.++.+|++.++... ||+||+|+.||+++|++++++++.. +.+|+|
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENK--PDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 48999999999999999999998999999999999999998876 9999999999999999999999753 467877
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
...+.+...++++.||++||.||++.++|..+++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 34556667889999999999999999999999988764
No 41
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.74 E-value=1.8e-17 Score=161.11 Aligned_cols=160 Identities=29% Similarity=0.369 Sum_probs=127.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE-
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI- 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI- 110 (665)
.++||||||++..+..++.+|...++.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENR--PDAIVLDINMPVLDGVSVVTALRAMDNDVPVCV 84 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999998999999999999999998876 9999999999999999999999754 678877
Q ss_pred --ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhc--c-ccccccCCc----------cccccCCCChhh
Q 006006 111 --TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNE--N-KEHENSGSL----------EETDHHKRGSDE 175 (665)
Q Consensus 111 --a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~--~-k~~~~~~~l----------e~~~~~~Lt~rE 175 (665)
...+.+...++++.||++||.||++.++|..++++++++.... . ......... .......++.+|
T Consensus 85 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE 164 (233)
T 1ys7_A 85 LSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKRE 164 (233)
T ss_dssp EECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHHCCCCCCCCEEEETTEEEETTTTEEEETTEECCCCHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhccccccccCcccccCCeEEccCccEEEECCEEeccCHHH
Confidence 4566667788999999999999999999999999998875431 1 100000000 011234689999
Q ss_pred HHHHHhhccC----CchhHHHHH
Q 006006 176 IEYASSVNEG----TEGTFKAQR 194 (665)
Q Consensus 176 ie~Lesl~eG----se~~lka~~ 194 (665)
.+++..+.++ ..+...+..
T Consensus 165 ~~vL~~l~~g~~~~~s~~~Ia~~ 187 (233)
T 1ys7_A 165 FDLLAVLAEHKTAVLSRAQLLEL 187 (233)
T ss_dssp HHHHHHHHHTTTCCBCHHHHHHH
T ss_pred HHHHHHHHhCCCCeEcHHHHHHH
Confidence 9999988888 444444433
No 42
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.74 E-value=3.7e-17 Score=145.49 Aligned_cols=119 Identities=24% Similarity=0.303 Sum_probs=104.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc--CCcc
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDLP 108 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~--~~IP 108 (665)
+..++||||||++..+..++.+|...++.|..+.++.+|+..+.... .||+||+|+.||+++|++++++|+.. +.+|
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 83 (136)
T 3hdv_A 5 AARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQK-RIGLMITDLRMQPESGLDLIRTIRASERAALS 83 (136)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHHHHTSTTTTCE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCC-CCcEEEEeccCCCCCHHHHHHHHHhcCCCCCC
Confidence 45689999999999999999999999999999999999999998653 49999999999999999999999864 6778
Q ss_pred EE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 109 VI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 109 VI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
|| ...+.+...++++.||++||.||++.++|..+++++..+.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred EEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 77 4567778889999999999999999999999999987665
No 43
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.74 E-value=2.5e-18 Score=177.28 Aligned_cols=116 Identities=22% Similarity=0.321 Sum_probs=104.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCccEE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP-~mDGlELLe~Ir~~~~IPVI 110 (665)
+.+||||||++.++..++.+|+..||.|. .|.++.+|++.+.+.. |||||+|+.|| +|||+++++.|+...++|||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~--~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI 237 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRT--PGLVLADIQLADGSSGIDAVKDILGRMDVPVI 237 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCC--CSEEEEESCCTTSCCTTTTTHHHHHHTTCCEE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCC--CCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEE
Confidence 35899999999999999999999999999 9999999999999877 99999999999 79999999999876699998
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
.....+...+|++.||++||.||++.++|..++++++...
T Consensus 238 ~lT~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~ 278 (286)
T 3n0r_A 238 FITAFPERLLTGERPEPTFLITKPFQPETVKAAIGQALFFH 278 (286)
T ss_dssp EEESCGGGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHS
T ss_pred EEeCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhC
Confidence 3333345677999999999999999999999999998765
No 44
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.74 E-value=4.4e-17 Score=145.68 Aligned_cols=118 Identities=19% Similarity=0.291 Sum_probs=105.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHH-----cCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRE-----RKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~~gy--~V~tAsngeEALelLre-----~k~~PDLVIlDI~MP~mDGlELLe~Ir~ 103 (665)
...++||||||++..+..++.+|...++ .|..+.++.+|++.+++ .. |||||+|+.||+++|+++++.|+.
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~ 84 (146)
T 3ilh_A 7 RKIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRW--PSIICIDINMPGINGWELIDLFKQ 84 (146)
T ss_dssp CCEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCC--CSEEEEESSCSSSCHHHHHHHHHH
T ss_pred CccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCC--CCEEEEcCCCCCCCHHHHHHHHHH
Confidence 3568999999999999999999999988 89999999999999987 55 999999999999999999999976
Q ss_pred -----cCCccEE---ecCchHHHHHHHHcC-CCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 104 -----EMDLPVI---TDGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 104 -----~~~IPVI---a~sd~e~a~kALe~G-A~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+|+| ...+.+...+++..| |++||.||++.++|..+++++....
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 85 HFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp HCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred hhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence 3567777 456778888999999 9999999999999999999886543
No 45
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.74 E-value=3.7e-17 Score=148.79 Aligned_cols=119 Identities=24% Similarity=0.404 Sum_probs=103.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHH-------cCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRE-------RKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy--~V~tAsngeEALelLre-------~k~~PDLVIlDI~MP~mDGlELLe~Ir 102 (665)
..++||||||++..+..++.+|...++ .|..+.++.+|++.++. ....|||||+|+.||+++|++++++|+
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 358999999999999999999999888 89999999999999961 122499999999999999999999997
Q ss_pred c---cCCccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 103 L---EMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 103 ~---~~~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
. .+.+||| ...+.+...++++.||++||.||++.++|..+++++.+..
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFF 136 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 6 3567877 4567778889999999999999999999999999986654
No 46
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.74 E-value=2.6e-17 Score=148.13 Aligned_cols=119 Identities=18% Similarity=0.291 Sum_probs=107.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCC
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMD 106 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~--V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~---~~~ 106 (665)
.+++||||||++..+..++.+|...++. |..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAK--YDLIILDIGLPIANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCC--CSEEEECTTCGGGCHHHHHHHHHSSSTTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcccccC
Confidence 4579999999999999999999998877 889999999999998766 999999999999999999999986 367
Q ss_pred ccEE---ecCchHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHHhhh
Q 006006 107 LPVI---TDGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKRWN 152 (665)
Q Consensus 107 IPVI---a~sd~e~a~kALe~GA~DYLlKPv-~~eEL~~aLq~Vlrk~~~ 152 (665)
+||| ...+.+...++++.||++||.||+ +.++|..++++++++...
T Consensus 82 ~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~ 131 (144)
T 3kht_A 82 TPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLT 131 (144)
T ss_dssp CCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHh
Confidence 8877 456778888999999999999999 999999999999987643
No 47
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.74 E-value=4.7e-17 Score=144.98 Aligned_cols=118 Identities=26% Similarity=0.344 Sum_probs=105.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHh-CCCE-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cC
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRR-CLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EM 105 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~-~gy~-V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~---~~ 105 (665)
...++||||||++..+..++.+|.. .++. |..+.++++|++.++... ||+||+|+.||+++|++++++|+. .+
T Consensus 6 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 83 (143)
T 3cnb_A 6 KNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVK--PDVVMLDLMMVGMDGFSICHRIKSTPATA 83 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTC--CSEEEEETTCTTSCHHHHHHHHHTSTTTT
T ss_pred cCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcC--CCEEEEecccCCCcHHHHHHHHHhCcccc
Confidence 4568999999999999999999998 8999 899999999999999876 999999999999999999999986 36
Q ss_pred CccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 106 DLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 106 ~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
.+||| ...+.+...++++.||++||.||++.++|..++++++++.
T Consensus 84 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 84 NIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 78877 4566777889999999999999999999999999998765
No 48
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.74 E-value=2.1e-17 Score=150.38 Aligned_cols=120 Identities=24% Similarity=0.334 Sum_probs=106.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CC
Q 006006 30 FPAGLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MD 106 (665)
Q Consensus 30 fP~girVLIVDDD~~ire~Lk~lL~~~g--y~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~ 106 (665)
....++||||||++..++.++.+|...+ +.|..+.++++|++.+++.. |||||+|+.||+++|+++++.|+.. +.
T Consensus 17 ~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~ 94 (150)
T 4e7p_A 17 RGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKES--VDIAILDVEMPVKTGLEVLEWIRSEKLE 94 (150)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSC--CSEEEECSSCSSSCHHHHHHHHHHTTCS
T ss_pred CCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccC--CCEEEEeCCCCCCcHHHHHHHHHHhCCC
Confidence 3456899999999999999999999876 78899999999999998776 9999999999999999999999754 56
Q ss_pred ccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 107 LPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 107 IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
+||| ...+.+...++++.||++||.||++.++|..++++++++..
T Consensus 95 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 95 TKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred CeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 7777 45677888999999999999999999999999999987653
No 49
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.74 E-value=7.8e-18 Score=150.84 Aligned_cols=118 Identities=19% Similarity=0.271 Sum_probs=106.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCcc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLP 108 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~--mDGlELLe~Ir~~-~~IP 108 (665)
..++||||||++..+..++.+|+..+|.|..+.++++|++.+++.. ||+||+|+.||+ ++|++++++++.. +.+|
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ 82 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDD--AIGMIIEAHLEDKKDSGIELLETLVKRGFHLP 82 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTT--EEEEEEETTGGGBTTHHHHHHHHHHHTTCCCC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccC--CCEEEEeCcCCCCCccHHHHHHHHHhCCCCCC
Confidence 4579999999999999999999999999999999999999997765 999999999999 9999999999754 5778
Q ss_pred EE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 109 VI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 109 VI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
|| ...+.+...++++.||++||.||++.++|..+++++..+..
T Consensus 83 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 83 TIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 77 56677888999999999999999999999999999988764
No 50
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.74 E-value=1.9e-17 Score=146.18 Aligned_cols=117 Identities=25% Similarity=0.437 Sum_probs=98.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI 110 (665)
.+++||||||++..+..++.+|...++.+..+.++++|++.+++.. ||+||+|+.||+++|++++++++.. +.+|+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT--PDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCC--CSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4579999999999999999999999999999999999999998766 9999999999999999999999754 567877
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHHh
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR 150 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv-~~eEL~~aLq~Vlrk~ 150 (665)
...+.+...++++.||++||.||+ +.++|..+++++++++
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 466777888999999999999999 8999999999987654
No 51
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.74 E-value=3.9e-18 Score=167.19 Aligned_cols=163 Identities=23% Similarity=0.257 Sum_probs=131.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CEE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCL-YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~g-y~V-~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI 110 (665)
++||||||++..+..++.+|...+ +.+ ..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 79 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAAR--PDVAVLDVRLPDGNGIELCRDLLSRMPDLRCL 79 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSEETTEEHHHHHHHHHHHCTTCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 799999999999999999999875 874 58999999999998876 999999999999999999999975 4678888
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhcccccccc------C-CccccccCCCChhhHHHHH
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENS------G-SLEETDHHKRGSDEIEYAS 180 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~~~------~-~le~~~~~~Lt~rEie~Le 180 (665)
+..+.+...++++.||++||.||++.++|..+++.++++........... . .........++.+|.+++.
T Consensus 80 ~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~~vL~ 159 (225)
T 3c3w_A 80 ILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLG 159 (225)
T ss_dssp EGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCTTTTSCHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHHHHHHhcccccccccccCCCCHHHHHHHH
Confidence 56778889999999999999999999999999999988754322110000 0 0001223468999999999
Q ss_pred hhccCCchhHHHHHhhcc
Q 006006 181 SVNEGTEGTFKAQRKRIS 198 (665)
Q Consensus 181 sl~eGse~~lka~~k~Is 198 (665)
.+.+|..+..++....++
T Consensus 160 ~l~~g~s~~eIa~~l~is 177 (225)
T 3c3w_A 160 LLSEGLTNKQIADRMFLA 177 (225)
T ss_dssp HHHTTCCHHHHHHHHTCC
T ss_pred HHHCCCCHHHHHHHhCCC
Confidence 999997776666655443
No 52
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.74 E-value=2.9e-17 Score=145.37 Aligned_cols=115 Identities=26% Similarity=0.442 Sum_probs=102.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc--CCccE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDLPV 109 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~-gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~--~~IPV 109 (665)
++||||||++..+..++.+|... ++.+. .+.++.+|++.++... ||+||+|+.||+++|++++++++.. +..|+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~i 80 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKR--PDILLLDIIMPHLDGLAVLERIRAGFEHQPNV 80 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHHCSSCCEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCcE
Confidence 68999999999999999999987 78765 8999999999998876 9999999999999999999999753 45666
Q ss_pred E---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
| ...+.+...++++.||++||.||++.++|..++++++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 81 IMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 6 5677888899999999999999999999999999887643
No 53
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.74 E-value=2.7e-17 Score=148.23 Aligned_cols=119 Identities=18% Similarity=0.363 Sum_probs=107.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCc
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~---~~~I 107 (665)
..+++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 83 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTH--PHLIITEANMPKISGMDLFNSLKKNPQTASI 83 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHTSTTTTTS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCC--CCEEEEcCCCCCCCHHHHHHHHHcCcccCCC
Confidence 45689999999999999999999998999999999999999999886 999999999999999999999986 4678
Q ss_pred cEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 108 PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 108 PVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
||| ...+.+...++++.||++||.||++.++|..+++++++...
T Consensus 84 pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 84 PVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 877 45677788899999999999999999999999999987653
No 54
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=2.9e-17 Score=147.87 Aligned_cols=116 Identities=26% Similarity=0.431 Sum_probs=105.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE--
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI-- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI-- 110 (665)
.+||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. +.+|||
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSK--PQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHC--CSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 48999999999999999999988999999999999999998876 9999999999999999999999754 567776
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
...+.+...++++.||++||.||++.++|..++++++++..
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAK 124 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999999999999887653
No 55
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.73 E-value=1.6e-17 Score=146.22 Aligned_cols=115 Identities=19% Similarity=0.246 Sum_probs=100.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCccE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IPV 109 (665)
.++||||||++..++.++.+|+..+|.|..+.++++|++.+++.. ||+||+|+.||+++|++++++++.. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG--YDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 479999999999999999999999999999999999999999876 9999999999999999999999864 67887
Q ss_pred E---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
| ...+.+. .++++.||++||.||++.++|.+++++..+..
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 81 VAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp EEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred EEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 7 3444555 78899999999999999999999999876543
No 56
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.73 E-value=1.4e-17 Score=147.53 Aligned_cols=117 Identities=15% Similarity=0.220 Sum_probs=103.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI 110 (665)
.++||||||++..++.++.+|...++.+. .+.++++|++.+++.. ||+||+|+.||+++|++++++++.. +.+|||
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii 78 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQYSGIII 78 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTCCSEEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcC--CCEEEEecCCCCCChHHHHHHHHhcCCCCeEE
Confidence 37999999999999999999999999987 8999999999999887 9999999999999999999999754 567777
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
...+.+...++++.||++||.||++.++|..++++++++..
T Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 79 IVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp EEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred EEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 45566678899999999999999999999999999987653
No 57
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.73 E-value=3.1e-17 Score=145.07 Aligned_cols=116 Identities=26% Similarity=0.337 Sum_probs=99.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCcc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IP 108 (665)
..++||||||++..+..++.+|+ .++.|..+.++.+|++.+++.. ||+||+|+.||+++|++++++++.. +.+|
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~p 79 (133)
T 3nhm_A 3 LKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHP--PDVLISDVNMDGMDGYALCGHFRSEPTLKHIP 79 (133)
T ss_dssp --CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhCCccCCCC
Confidence 45799999999999999999999 6899999999999999999876 9999999999999999999999864 4688
Q ss_pred EE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 109 VI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 109 VI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
|| ...+.+. .++++.||++||.||++.++|..++++++++..
T Consensus 80 ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 80 VIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp EEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhc
Confidence 77 3344445 789999999999999999999999999988764
No 58
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.73 E-value=3.1e-17 Score=157.40 Aligned_cols=118 Identities=26% Similarity=0.353 Sum_probs=107.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI 110 (665)
..++||||||++..+..++.+|...+|.|. .+.++.+|++.++... ||+||+|+.||+++|+++++.++.....|||
T Consensus 12 m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~--~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii 89 (205)
T 1s8n_A 12 VPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHK--PDLVIMDVKMPRRDGIDAASEIASKRIAPIV 89 (205)
T ss_dssp CCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCSCEE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCChHHHHHHHHhcCCCCEE
Confidence 347999999999999999999999899987 8999999999999877 9999999999999999999999866555777
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
++.+.+...++++.||++||.||++.++|..++++++++..
T Consensus 90 ~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 133 (205)
T 1s8n_A 90 VLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR 133 (205)
T ss_dssp EEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 56778888899999999999999999999999999987653
No 59
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.73 E-value=4.9e-17 Score=143.65 Aligned_cols=118 Identities=23% Similarity=0.350 Sum_probs=101.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC---Cc
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM---DL 107 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~---~I 107 (665)
..+++||||||++..+..++.+|...++.|..+.++.+|++.+++.. ||+||+|+.||+++|++++++|+... ..
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 81 (132)
T 3lte_A 4 KQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFE--PAIMTLDLSMPKLDGLDVIRSLRQNKVANQP 81 (132)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTC--CSEEEEESCBTTBCHHHHHHHHHTTTCSSCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCccCCC
Confidence 34689999999999999999999999999999999999999998876 99999999999999999999998643 34
Q ss_pred cEE--ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 108 PVI--TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 108 PVI--a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
+|| ...+.+...++++.||++||.||++.++|..+++++..+.
T Consensus 82 ~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 82 KILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp EEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred eEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 454 3334457789999999999999999999999999887654
No 60
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.73 E-value=2.8e-17 Score=151.28 Aligned_cols=114 Identities=25% Similarity=0.391 Sum_probs=103.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHHc--CCCceEEEEeCCCCCCCHHHHHHHHhc-cCCc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRER--KGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDL 107 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~-tAsngeEALelLre~--k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~I 107 (665)
..++||||||++..++.|+.+|+..++.+. .+.++.+|++.+++. . |||||+|+.||+++|++++++|+. .+.+
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~--~dliilD~~l~~~~g~~~~~~lr~~~~~~ 112 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPN--IDIVTLXITMPKMDGITCLSNIMEFDKNA 112 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG--CCEEEECSSCSSSCHHHHHHHHHHHCTTC
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCC--CCEEEEeccCCCccHHHHHHHHHhhCCCC
Confidence 347999999999999999999999999988 999999999999987 5 899999999999999999999975 4667
Q ss_pred cEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006006 108 PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147 (665)
Q Consensus 108 PVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vl 147 (665)
||| ...+.+...++++.||++||.||++.++|..++++++
T Consensus 113 ~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 113 RVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred cEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 777 4567888899999999999999999999999998765
No 61
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.73 E-value=3.7e-17 Score=165.17 Aligned_cols=120 Identities=30% Similarity=0.407 Sum_probs=107.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCcc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IP 108 (665)
..++||||||++..+..+...|...++.|..+.++++|++.+++.. .||+||+|+.||++||++++++|+.. ..+|
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~-~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ 201 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHP-AIRLVLVDYYMPEIDGISLVRMLRERYSKQQLA 201 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC-CCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCe
Confidence 4589999999999999999999999999999999999999998752 38999999999999999999999754 3577
Q ss_pred EE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhh
Q 006006 109 VI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 152 (665)
Q Consensus 109 VI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~ 152 (665)
|| +..+.....+|++.||++||.||++.++|...++++++....
T Consensus 202 ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ 248 (259)
T 3luf_A 202 IIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQ 248 (259)
T ss_dssp EEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHhh
Confidence 77 566777888999999999999999999999999999876643
No 62
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.73 E-value=6.1e-17 Score=144.89 Aligned_cols=118 Identities=24% Similarity=0.390 Sum_probs=106.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHH----------cCCCceEEEEeCCCCCCCHHHHHH
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRE----------RKGCFDVVLSDVHMPDMDGFKLLE 99 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy--~V~tAsngeEALelLre----------~k~~PDLVIlDI~MP~mDGlELLe 99 (665)
.+++||||||++..+..++.+|...++ .|..+.++.+|++.++. .. ||+||+|+.||+++|+++++
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~ 82 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPR--PAVILLDLNLPGTDGREVLQ 82 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCC--CSEEEECSCCSSSCHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCC--CcEEEEECCCCCCCHHHHHH
Confidence 457999999999999999999999888 89999999999999986 44 99999999999999999999
Q ss_pred HHhcc---CCccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 100 HIGLE---MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 100 ~Ir~~---~~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
.|+.. +.+||| ...+.+...++++.||++||.||++.++|..+++++++...
T Consensus 83 ~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 140 (149)
T 1k66_A 83 EIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWL 140 (149)
T ss_dssp HHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred HHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 99865 567777 45667888899999999999999999999999999987653
No 63
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.73 E-value=6e-17 Score=143.77 Aligned_cols=115 Identities=27% Similarity=0.487 Sum_probs=103.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE--
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI-- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI-- 110 (665)
.+||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK--PDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILML 81 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 68999999999999999999998999999999999999998876 9999999999999999999999754 567777
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+.....++++.||++||.||++.++|...+++++++.
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 82 TAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp ECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred ECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 4455666788999999999999999999999999987653
No 64
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.72 E-value=9.5e-17 Score=142.83 Aligned_cols=119 Identities=22% Similarity=0.315 Sum_probs=107.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCccE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPV 109 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP-~mDGlELLe~Ir~~~~IPV 109 (665)
..++||||||++..+..++.+|+..++.+. .+.++.+|++.+++.. ||+||+|+.|| +++|+++++.++..+.+||
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~~~~~~~g~~~~~~l~~~~~~~i 85 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLR--PDIALVDIMLCGALDGVETAARLAAGCNLPI 85 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCCSSSCHHHHHHHHHHHSCCCE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCCHHHHHHHHHhCCCCCE
Confidence 468999999999999999999998899998 5999999999999877 99999999998 7999999999976577887
Q ss_pred E---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhh
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 152 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~ 152 (665)
| ...+.+...++++.||++||.||++.++|..++++++++...
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 131 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKL 131 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcccc
Confidence 7 456777888999999999999999999999999999877643
No 65
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.72 E-value=6.2e-18 Score=165.17 Aligned_cols=167 Identities=10% Similarity=0.004 Sum_probs=126.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHH-HHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cC
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALD-ILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EM 105 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~-~gy~V~-tAsngeEALe-lLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~--~~ 105 (665)
+..++||||||++..+..++.+|+. .++.+. .+.++.+++. .++... ||+||+|+.||++||++++++|+. .+
T Consensus 5 ~~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~~~ 82 (225)
T 3klo_A 5 ENKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRS--IQMLVIDYSRISDDVLTDYSSFKHISCP 82 (225)
T ss_dssp CSSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGG--CCEEEEEGGGCCHHHHHHHHHHHHHHCT
T ss_pred CCceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhccC--CCEEEEeCCCCCCCHHHHHHHHHHhhCC
Confidence 3458999999999999999999984 578875 4456666665 456555 999999999999999999999976 57
Q ss_pred CccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhcccccc---------ccCCccccccCCCCh
Q 006006 106 DLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE---------NSGSLEETDHHKRGS 173 (665)
Q Consensus 106 ~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~~~---------~~~~le~~~~~~Lt~ 173 (665)
.+||| ++.+.+...++++.||++||.||++.++|..+++.++++......... ............++.
T Consensus 83 ~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 162 (225)
T 3klo_A 83 DAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTK 162 (225)
T ss_dssp TCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCBCCHHHHHHHHHHHHTTCCCCCCHHHHTSCH
T ss_pred CCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEeeCHHHHHHHHHHhhcccccccccccccCCH
Confidence 88877 566777888999999999999999999999999999876532211100 000011122346899
Q ss_pred hhHHHHHhhccCCchhHHHHHhhccc
Q 006006 174 DEIEYASSVNEGTEGTFKAQRKRISA 199 (665)
Q Consensus 174 rEie~Lesl~eGse~~lka~~k~Is~ 199 (665)
+|.+++..+.+|..+...+....++.
T Consensus 163 rE~~vL~~l~~g~s~~~Ia~~l~~s~ 188 (225)
T 3klo_A 163 REQQIIKLLGSGASNIEIADKLFVSE 188 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHTTCCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCH
Confidence 99999999999877766665554443
No 66
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.72 E-value=9.8e-17 Score=145.99 Aligned_cols=121 Identities=23% Similarity=0.296 Sum_probs=105.5
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-C
Q 006006 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-M 105 (665)
Q Consensus 29 ~fP~girVLIVDDD~~ire~Lk~lL~~~gy~--V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~ 105 (665)
..+.+.+||||||++..++.++.+|...++. |..+.++.+|++.+++.. |||||+|+.||+++|+++++.|+.. +
T Consensus 11 ~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~ 88 (152)
T 3eul_A 11 PQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHL--PDVALLDYRMPGMDGAQVAAAVRSYEL 88 (152)
T ss_dssp ---CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTC
T ss_pred CCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 4567789999999999999999999988743 568999999999999887 9999999999999999999999754 5
Q ss_pred CccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 106 DLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 106 ~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
.+||| ...+.+...++++.||++||.||++.++|..++++++++..
T Consensus 89 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 89 PTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred CCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 67777 46677888899999999999999999999999999987653
No 67
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.72 E-value=1.3e-17 Score=146.01 Aligned_cols=114 Identities=26% Similarity=0.429 Sum_probs=103.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCccEE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IPVI 110 (665)
++||||||++..+..++.+|...++.+..+.++.+|++.++... ||+||+|+.||+++|++++++++.. +.+|+|
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPW--PDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSC--CSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 58999999999999999999988999999999999999887655 9999999999999999999999754 567877
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
...+.+...++++.||++||.||++.++|...+++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 456677788899999999999999999999999988764
No 68
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.72 E-value=2.5e-17 Score=147.60 Aligned_cols=118 Identities=21% Similarity=0.304 Sum_probs=97.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCccE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IPV 109 (665)
.++||||||++..+..++.+|+.. +.|..+.++.+|++.+++.. ||+||+|+.||+++|++++++++.. +.+||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHH--PDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHC--CSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 479999999999999999999987 99999999999999999887 9999999999999999999999765 57887
Q ss_pred E---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhc
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNE 153 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~ 153 (665)
| ...+.+...++++.||++||.||++.++|..++++++++....
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 126 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYY 126 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHHH
Confidence 7 3455666778999999999999999999999999998876443
No 69
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.71 E-value=6e-17 Score=156.77 Aligned_cols=147 Identities=23% Similarity=0.273 Sum_probs=118.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE--
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI-- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI-- 110 (665)
++||||||++..+..++.+|...+ .|..+.++.+|++.+ .. ||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~--~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l 77 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE--EA--FHVVVLDVMLPDYSGYEICRMIKETRPETWVILL 77 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC--SC--CSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc--CC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 699999999999999999999888 889999999999977 34 9999999999999999999999754 678877
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhhcccc---c--ccc-CC-ccccccCCCChhhHHHHHhh
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKE---H--ENS-GS-LEETDHHKRGSDEIEYASSV 182 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~~~k~---~--~~~-~~-le~~~~~~Lt~rEie~Lesl 182 (665)
+..+.+...++++.||++||.||++.++|..++++++++....... . ... .. ........++.+|.+++..+
T Consensus 78 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~~l 157 (220)
T 1p2f_A 78 TLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREKKGLYDFGDLKIDATGFTVFLKGKRIHLPKKEFEILLFL 157 (220)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCCCSEEEETTEEEETTTTEEEETTEECCCCHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccccccCcccccEEEECCCCEEEECCEEEecCHHHHHHHHHH
Confidence 4677788899999999999999999999999999998875310000 0 000 00 00112245899999999988
Q ss_pred ccC
Q 006006 183 NEG 185 (665)
Q Consensus 183 ~eG 185 (665)
.++
T Consensus 158 ~~~ 160 (220)
T 1p2f_A 158 AEN 160 (220)
T ss_dssp HHT
T ss_pred HHC
Confidence 887
No 70
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.71 E-value=3e-17 Score=148.06 Aligned_cols=119 Identities=20% Similarity=0.320 Sum_probs=105.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHH--cCCCceEEEEeCCCCCCCHHHHHHHHhc-cC
Q 006006 30 FPAGLRVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDILRE--RKGCFDVVLSDVHMPDMDGFKLLEHIGL-EM 105 (665)
Q Consensus 30 fP~girVLIVDDD~~ire~Lk~lL~~~g-y~V~tAsngeEALelLre--~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~ 105 (665)
...+.+||||||++..+..|+.+|...+ |.|..+.++.+++..+.+ .. |||||+|+.||+++|++++++|+. .+
T Consensus 17 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~ 94 (146)
T 4dad_A 17 FQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDA--FDILMIDGAALDTAELAAIEKLSRLHP 94 (146)
T ss_dssp CGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTT--CSEEEEECTTCCHHHHHHHHHHHHHCT
T ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCC--CCEEEEeCCCCCccHHHHHHHHHHhCC
Confidence 4466899999999999999999999888 999999999988887765 55 999999999999999999999975 45
Q ss_pred CccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 106 DLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 106 ~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
.+||| ...+.+.+.++++.||++||.||++.++|..++++++++.
T Consensus 95 ~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 95 GLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp TCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 67877 4567788899999999999999999999999999988764
No 71
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.71 E-value=1.2e-16 Score=145.47 Aligned_cols=118 Identities=25% Similarity=0.444 Sum_probs=105.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI 110 (665)
.+++||||||++..++.++.+|++ ++.|..+.++.+|++.+++.. .||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 80 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSD-PFSVIMVDMRMPGMEGTEVIQKARLISPNSVYL 80 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSC-CCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCC-CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEE
Confidence 457999999999999999999986 899999999999999998764 2599999999999999999999975 4677777
Q ss_pred ---ecCchHHHHHHHHcC-CCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 111 ---TDGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 111 ---a~sd~e~a~kALe~G-A~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
...+.+...++++.| |++||.||++.++|..+++.++++..
T Consensus 81 ~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 81 MLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp EEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 456677788999999 99999999999999999999987754
No 72
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.71 E-value=4.8e-17 Score=145.44 Aligned_cols=120 Identities=24% Similarity=0.374 Sum_probs=106.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCc
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~---~~~I 107 (665)
...++||||||++..++.++.+|...+|.|..+.++++|++.++... ||+||+|+.||+++|++++++++. .+.+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 82 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF--SGVVLLDIMMPGMDGWDTIRAILDNSLEQGI 82 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC--CEEEEEESCCSSSCHHHHHHHHHHTTCCTTE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 35689999999999999999999999999999999999999998876 999999999999999999999976 3678
Q ss_pred cEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhh
Q 006006 108 PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 152 (665)
Q Consensus 108 PVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~ 152 (665)
||| ...+.+...++++.||++||.||++.++|..+++++++..+.
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 130 (142)
T 3cg4_A 83 AIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRN 130 (142)
T ss_dssp EEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 877 344556677899999999999999999999999999876543
No 73
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.71 E-value=5.7e-18 Score=151.22 Aligned_cols=116 Identities=18% Similarity=0.149 Sum_probs=104.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPV 109 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~g-y~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPV 109 (665)
..++||||||++..+..++.+|+..+ |.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 90 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTR--PGIVILDLGGGDLLGKPGIVEARALWATVPL 90 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCC--CSEEEEEEETTGGGGSTTHHHHHGGGTTCCE
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccC--CCEEEEeCCCCCchHHHHHHHHHhhCCCCcE
Confidence 45799999999999999999999999 99999999999999997665 9999999999999999999999754 47887
Q ss_pred E---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
| ...+.+...++++.||++||.||++.++|..++++++++
T Consensus 91 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 91 IAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred EEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 7 566788889999999999999999999999999887654
No 74
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.71 E-value=9.9e-17 Score=143.97 Aligned_cols=115 Identities=30% Similarity=0.435 Sum_probs=98.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCccEE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IPVI 110 (665)
++||||||++..+..++.+|+..++.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. ..+|||
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 81 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATP--PDLVLLDIMMEPMDGWETLERIKTDPATRDIPVL 81 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 69999999999999999999998999999999999999998876 9999999999999999999999753 467877
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+......++..|+++||.||++.++|..++++++++.
T Consensus 82 ~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 82 MLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp EEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred EEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 2333334444556678999999999999999999887543
No 75
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.71 E-value=2.3e-16 Score=143.87 Aligned_cols=118 Identities=24% Similarity=0.437 Sum_probs=106.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI 110 (665)
.+++||||||++..+..++.+|...++.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTS--VQLVISDMRMPEMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSC--CSEEEEESSCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 4589999999999999999999998999999999999999998766 999999999999999999999975 4678877
Q ss_pred ---ecCchHHHHHHHHcC-CCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 111 ---TDGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 111 ---a~sd~e~a~kALe~G-A~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
...+.+...++++.| |++||.||++.++|..++++++++..
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 84 VISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp EEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence 455667788999998 99999999999999999999987654
No 76
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.70 E-value=2e-16 Score=140.68 Aligned_cols=116 Identities=27% Similarity=0.431 Sum_probs=104.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHHHHHhc-cCC
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGL-EMD 106 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP-----~mDGlELLe~Ir~-~~~ 106 (665)
.++||||||++..+..++.+|...++.|..+.++.+|++.+++.. ||+||+|+.|| +++|++++++++. .+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREEN--PEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSC--EEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCC--CCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 479999999999999999999998999999999999999999876 99999999999 9999999999975 367
Q ss_pred ccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 107 LPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 107 IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
+||| ...+.+...++++.||++||.||++.++|..++++++++.
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred CCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 7877 4566778889999999999999999999999999987654
No 77
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.70 E-value=1.1e-16 Score=160.72 Aligned_cols=117 Identities=31% Similarity=0.484 Sum_probs=106.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI 110 (665)
.+++||||||++..+..++.+|+..+|.|..+.++.+|++.+++.. ||+||+|+.||+|||++++++|+.. +.+|||
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI 205 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVI 205 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSC--CSEEEEEESSCSSCCHHHHHHHHHHHCCSCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 4689999999999999999999988999999999999999998876 9999999999999999999999753 678887
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
+..+.+...++++.|+++||.||++.++|..++++++++.
T Consensus 206 ~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 248 (254)
T 2ayx_A 206 GVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERV 248 (254)
T ss_dssp EEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHh
Confidence 4556778889999999999999999999999999987765
No 78
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.70 E-value=1.1e-16 Score=143.29 Aligned_cols=117 Identities=24% Similarity=0.355 Sum_probs=104.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI 110 (665)
..++||||||++..+..++.+|+..+|.|..+.++.+|++.+++.. ||+||+|+ ||+++|+++++.++.. +.+|||
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii 79 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREK--IDLVFVDV-FEGEESLNLIRRIREEFPDTKVA 79 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSC--CSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccC--CCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEE
Confidence 4579999999999999999999998999999999999999998766 99999999 9999999999999753 568877
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
...+.+...++++.||++||.||++.++|..++++++++..
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 80 VLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp EEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred EEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 45677788899999999999999999999999999987653
No 79
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.70 E-value=6.1e-17 Score=172.99 Aligned_cols=116 Identities=31% Similarity=0.422 Sum_probs=107.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE--
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI-- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI-- 110 (665)
.+||||||++.++..++.+|+..+|.|..+.++.+|++.++... |||||+|++||+|||++++++|+. .+.+|||
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~l 78 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELF--FPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVI 78 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBC--CSEEEEESEETTEETTTHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 38999999999999999999999999999999999999999887 999999999999999999999975 4677877
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
++.+.+.+.+|++.||++||.||++.++|..++++++....
T Consensus 79 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 79 TGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp ECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred eCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 56788899999999999999999999999999999987653
No 80
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.70 E-value=1.2e-16 Score=142.55 Aligned_cols=115 Identities=21% Similarity=0.344 Sum_probs=99.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cC----C
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EM----D 106 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~----~ 106 (665)
.+++||||||++..+..++.+|...++.|..+.++.+|++.++.. +|+||+|+.||+++|+++++++++ .. .
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~ 82 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE---HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQ 82 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT---CSEEEEECCSSTTTTTHHHHHHHHHHC-CCSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc---CCEEEEeCCCCCCcHHHHHHHHHHhhhhccCC
Confidence 468999999999999999999998899999999999999988542 599999999999999999999973 22 2
Q ss_pred c-cEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 107 L-PVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 107 I-PVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
. +|| ...+.+...++++.||++||.||++.++|..++++++++
T Consensus 83 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 83 RPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp CCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 3 344 456777788999999999999999999999999987654
No 81
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.69 E-value=2.3e-16 Score=137.02 Aligned_cols=113 Identities=17% Similarity=0.327 Sum_probs=102.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhcc---CCccE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLE---MDLPV 109 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP-~mDGlELLe~Ir~~---~~IPV 109 (665)
++||||||++..+..++.+|+..++.|..+.++.+|++.++... ||+||+|+.|| +++|++++++++.. +.+||
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~i 83 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDR--PDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHC--CSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcC--CCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 59999999999999999999998999999999999999999877 99999999999 99999999999764 67887
Q ss_pred E--ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 110 I--TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 110 I--a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
| ...+.+...++++.||++||.||++.++|...++++++
T Consensus 84 i~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 84 VIIGNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp EEEECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEEecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 7 44556678889999999999999999999999988764
No 82
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.69 E-value=1.1e-16 Score=138.19 Aligned_cols=110 Identities=25% Similarity=0.396 Sum_probs=97.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE--
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI-- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI-- 110 (665)
++||||||++..+..++.+|...++.|..+.++.+|++.++... ||+||+|+.||+++|++++++++. .+.+|+|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGN--YDLVILDIEMPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEE
Confidence 58999999999999999999998999999999999999998876 999999999999999999999975 3567777
Q ss_pred e-cCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006006 111 T-DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147 (665)
Q Consensus 111 a-~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vl 147 (665)
+ ..+.. .++++.||++||.||++.++|..++++++
T Consensus 80 s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 80 TAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred ECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 2 22333 67889999999999999999999888763
No 83
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.69 E-value=7.6e-17 Score=145.81 Aligned_cols=116 Identities=26% Similarity=0.355 Sum_probs=95.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh--CCCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccE
Q 006006 34 LRVLVVDDDITCLRILEQMLRR--CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~--~gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPV 109 (665)
++||||||++..++.++.+|.+ .++.+. .+.++.+|++.++... ||+||+|+.||+++|++++++|++ .+.+||
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~l~~~l~~~~~~~~i 80 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHP--PNVLLTDVRMPRMDGIELVDNILKLYPDCSV 80 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSC--CSEEEEESCCSSSCHHHHHHHHHHHCTTCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Confidence 6899999999999999999974 467666 8999999999997765 999999999999999999999975 467787
Q ss_pred E---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
| ...+.+.+.++++.||++||.||++.++|..+++++++...
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 81 IFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVL 125 (141)
T ss_dssp EEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 7 44556677889999999999999999999999999887653
No 84
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.69 E-value=1.2e-16 Score=169.74 Aligned_cols=116 Identities=28% Similarity=0.499 Sum_probs=105.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE-
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI- 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI- 110 (665)
.++||||||++..+..|+.+|+..+|.|..+.++++|++.+++.. |||||+|+.||+|||++++++|++. +++|||
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~ 82 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQ--PDLVICDLRMPQIDGLELIRRIRQTASETPIIV 82 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSC--CSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEE
Confidence 579999999999999999999999999999999999999998876 9999999999999999999999754 678888
Q ss_pred --ecCchHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHHh
Q 006006 111 --TDGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR 150 (665)
Q Consensus 111 --a~sd~e~a~kALe~GA~DYLlKPv-~~eEL~~aLq~Vlrk~ 150 (665)
++.+.+.+.+|++.||++||.||+ +.++|..+++++++..
T Consensus 83 lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 83 LSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp C---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 567788899999999999999999 6899999998887654
No 85
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.69 E-value=3.5e-16 Score=139.95 Aligned_cols=115 Identities=18% Similarity=0.291 Sum_probs=101.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHH------cCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRE------RKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy--~V~tAsngeEALelLre------~k~~PDLVIlDI~MP~mDGlELLe~Ir~ 103 (665)
..++||||||++..+..++.+|...++ .|..+.++.+|++.++. .. ||+||+|+.||+++|+++++.++.
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~--~dlii~D~~l~~~~g~~~~~~l~~ 83 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIH--PKLILLDINIPKMNGIEFLKELRD 83 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCC--CSEEEEETTCTTSCHHHHHHHHTT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCC--CCEEEEecCCCCCCHHHHHHHHHc
Confidence 457999999999999999999998887 89999999999999986 44 999999999999999999999986
Q ss_pred c---CCccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 104 E---MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 104 ~---~~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
. +.+|+| ...+.+...++++.||++||.||++.++|.+++.+...
T Consensus 84 ~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 84 DSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp SGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 5 678877 45567788899999999999999999999998876543
No 86
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.68 E-value=5e-16 Score=139.25 Aligned_cols=114 Identities=25% Similarity=0.363 Sum_probs=100.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE--
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI-- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI-- 110 (665)
.+||||||++..+..++.+|... |.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++.. +.+|+|
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~ 78 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEEW--VQVIICDQRMPGRTGVDFLTEVRERWPETVRIII 78 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHSC--EEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEE
Confidence 48999999999999999999875 89999999999999998876 9999999999999999999999753 567766
Q ss_pred -ecCchHHHHHHHHc-CCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 -TDGRVSAVMRGIRH-GACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 -a~sd~e~a~kALe~-GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+.....++++. ||++||.||++.++|..+++++++..
T Consensus 79 s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 79 TGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp ESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 44556677888876 59999999999999999999987654
No 87
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.68 E-value=3.5e-16 Score=142.75 Aligned_cols=118 Identities=31% Similarity=0.488 Sum_probs=105.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI 110 (665)
.+++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 2 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dliild~~l~~~~g~~~~~~l~~~~~~~pii 79 (155)
T 1qkk_A 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADF--AGIVISDIRMPGMDGLALFRKILALDPDLPMI 79 (155)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTC--CSEEEEESCCSSSCHHHHHHHHHHHCTTSCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 3579999999999999999999999999999999999999997765 999999999999999999999975 3678877
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
...+.+...++++.||++||.||++.++|..++++++++..
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 80 LVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp EEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 45566778899999999999999999999999999987653
No 88
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.68 E-value=6.4e-16 Score=138.59 Aligned_cols=119 Identities=19% Similarity=0.360 Sum_probs=101.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC-Ccc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLP 108 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~-gy~-V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~-~IP 108 (665)
..++||||||++..+..++.+|... ++. +..+.++.+|++.++... |||||+|+.||+++|+++++.++... ..+
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 85 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNK--VDAIFLDINIPSLDGVLLAQNISQFAHKPF 85 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCC--CSEEEECSSCSSSCHHHHHHHHTTSTTCCE
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHccCCCce
Confidence 4589999999999999999999875 777 458999999999998876 99999999999999999999998654 444
Q ss_pred EE-ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhhh
Q 006006 109 VI-TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 152 (665)
Q Consensus 109 VI-a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~~ 152 (665)
|| .....+...++++.||++||.||++.++|..+++++++....
T Consensus 86 ii~~s~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (143)
T 2qv0_A 86 IVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQ 130 (143)
T ss_dssp EEEEESCCTTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 55 222244677899999999999999999999999999877643
No 89
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.68 E-value=1.6e-16 Score=143.51 Aligned_cols=112 Identities=22% Similarity=0.306 Sum_probs=92.2
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 006006 30 FPAGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (665)
Q Consensus 30 fP~girVLIVDDD~~ire~Lk~lL~~~-gy~V-~tAsngeEALelLre~-k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~ 106 (665)
.+.+.+||||||++..+..++.+|+.. ++.+ ..+.++++|++.+++. . |||||+|+.||+++|++++++|+....
T Consensus 10 ~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~--~dlvilD~~l~~~~g~~~~~~lr~~~~ 87 (145)
T 3kyj_B 10 HGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPN--VDLILLDIEMPVMDGMEFLRHAKLKTR 87 (145)
T ss_dssp -CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTT--CCEEEECTTSCCCTTCHHHHHHHHHCC
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCCC--CCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 345679999999999999999999987 7875 5899999999999887 5 999999999999999999999986655
Q ss_pred ccEE---e--cCchHHHHHHHHcCCCeEEeCCCCHHHHHHHH
Q 006006 107 LPVI---T--DGRVSAVMRGIRHGACDYLIKPIREEELKNIW 143 (665)
Q Consensus 107 IPVI---a--~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aL 143 (665)
.|+| . ..+.+.+.++++.||++||.||++.++|...+
T Consensus 88 ~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i 129 (145)
T 3kyj_B 88 AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEE 129 (145)
T ss_dssp CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------
T ss_pred CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Confidence 6665 2 44566788999999999999999966665443
No 90
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.67 E-value=3.9e-16 Score=142.15 Aligned_cols=117 Identities=21% Similarity=0.325 Sum_probs=104.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCcc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLP 108 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~-~gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IP 108 (665)
.+++||||||++..+..++.+|.. .++.+. .+.++.+|++.+++.. ||+||+|+.||+++|++++++++.. +.+|
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ 81 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETT--PDIVVMDLTLPGPGGIEATRHIRQWDGAAR 81 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCC
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCe
Confidence 357999999999999999999998 689887 8999999999998876 9999999999999999999999754 5677
Q ss_pred EE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 109 VI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 109 VI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
|| ...+.+...++++.||++||.||++.++|..++++++++.
T Consensus 82 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 82 ILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp EEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred EEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 77 4566788889999999999999999999999999887654
No 91
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.67 E-value=2.5e-16 Score=152.73 Aligned_cols=146 Identities=14% Similarity=0.168 Sum_probs=117.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CccEE--
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVI-- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~-~IPVI-- 110 (665)
|+||||||++..+..++.+|...++.|..+.++.+|++.+.... ||+|| ||+++|+++++.++..+ .+|||
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----lp~~~g~~~~~~lr~~~~~~~ii~l 74 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEKHSSIVVLVS 74 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSC--CSEEE----ECCTTHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCC--CCEEE----eCCCCHHHHHHHHHhCCCCCcEEEE
Confidence 58999999999999999999988999999999999999998765 99999 99999999999997656 78877
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHHh--hhcccc-c--cccC-C-ccccccCCCChhhHHHHHh
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR--WNENKE-H--ENSG-S-LEETDHHKRGSDEIEYASS 181 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv-~~eEL~~aLq~Vlrk~--~~~~k~-~--~~~~-~-le~~~~~~Lt~rEie~Les 181 (665)
+..+.+...++++.||++||.||+ +.++|..++++++++. ...... . .... . ........++.+|.+++..
T Consensus 75 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vL~~ 154 (223)
T 2hqr_A 75 SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLTH 154 (223)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSCCCCSEEETTEEEETTTTEEEETTEEECCCSTTTHHHHH
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccccCCeEEECCEEEecccCEEEECCEEEecCHHHHHHHHH
Confidence 567788899999999999999999 9999999999998764 111100 0 0000 0 0011223588999999998
Q ss_pred hccC
Q 006006 182 VNEG 185 (665)
Q Consensus 182 l~eG 185 (665)
+.++
T Consensus 155 l~~~ 158 (223)
T 2hqr_A 155 LARH 158 (223)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 8887
No 92
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.67 E-value=5.3e-16 Score=166.55 Aligned_cols=115 Identities=30% Similarity=0.508 Sum_probs=106.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE--
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI-- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI-- 110 (665)
|+||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||++||++++++|+. .+++|||
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvl 78 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLDLLLPDVNGLEILKWIKERSPETEVIVI 78 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 58999999999999999999988999999999999999998876 999999999999999999999975 4678877
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
++.+.+.+.+|++.||+|||.||++.++|..+++++++.+
T Consensus 79 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 79 TGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 6778889999999999999999999999999999988654
No 93
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.66 E-value=6e-16 Score=166.73 Aligned_cols=115 Identities=32% Similarity=0.487 Sum_probs=105.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCccEE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IPVI 110 (665)
.+||||||++..+..|+.+|...++.|..+.++.+|++.++... |||||+|+.||+|||++++++|+.. +.+|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDL--PDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 48999999999999999999988999999999999999998877 9999999999999999999999853 467887
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
++.+.+.+.+|++.||++||.||++.++|...++.+++..
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 5678888999999999999999999999999999887654
No 94
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.66 E-value=1.4e-16 Score=143.01 Aligned_cols=112 Identities=24% Similarity=0.430 Sum_probs=94.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc------CCc
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE------MDL 107 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~------~~I 107 (665)
++||||||++..+..++.+|+..++.+..+.++.+|++.++... ||+||+|+.||+++|++++++|++. +.+
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~ 88 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQ--FDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRA 88 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSC--CSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCce
Confidence 69999999999999999999988999999999999999998876 9999999999999999999999752 556
Q ss_pred cEE--ec-CchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 108 PVI--TD-GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 108 PVI--a~-sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
|+| +. .+.... .+.||++||.||++.++|..++++++++.
T Consensus 89 ~ii~~s~~~~~~~~---~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 89 SIIAITADTIDDDR---PGAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp CCEEEESSCCSCCC---CCSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred EEEEEeCccchhHH---HhCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 666 22 221111 27899999999999999999999987654
No 95
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.66 E-value=8.6e-16 Score=142.85 Aligned_cols=116 Identities=26% Similarity=0.351 Sum_probs=95.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCC-C-EEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCcc
Q 006006 31 PAGLRVLVVDDDITCLRILEQMLRRCL-Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (665)
Q Consensus 31 P~girVLIVDDD~~ire~Lk~lL~~~g-y-~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IP 108 (665)
...++||||||++..+..++.+|...+ + .+..+.++.+|++.+++.. |||||+|+.||+++|+++++.|+....+|
T Consensus 23 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~l~~~lr~~~~~~ 100 (164)
T 3t8y_A 23 DRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELK--PDVITMDIEMPNLNGIEALKLIMKKAPTR 100 (164)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHSCCE
T ss_pred cCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCce
Confidence 356899999999999999999999874 3 3558999999999999887 99999999999999999999998655577
Q ss_pred EE---ecCc--hHHHHHHHHcCCCeEEeCCCC---------HHHHHHHHHHHHH
Q 006006 109 VI---TDGR--VSAVMRGIRHGACDYLIKPIR---------EEELKNIWQHVVR 148 (665)
Q Consensus 109 VI---a~sd--~e~a~kALe~GA~DYLlKPv~---------~eEL~~aLq~Vlr 148 (665)
+| ...+ .+.+.++++.||++||.||++ .++|.+++++++.
T Consensus 101 ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~ 154 (164)
T 3t8y_A 101 VIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMN 154 (164)
T ss_dssp EEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTT
T ss_pred EEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhC
Confidence 76 2233 336779999999999999999 4555555555543
No 96
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.66 E-value=4.7e-16 Score=141.44 Aligned_cols=117 Identities=19% Similarity=0.188 Sum_probs=96.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CC-EEEEECCHHHHHHHHHH-cCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCcc
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRC-LY-NVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLP 108 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~-gy-~V~tAsngeEALelLre-~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IP 108 (665)
.++||||||++..+..++.+|... ++ .|..+.++.+|++.++. .. ||+||+|+.||+++|+++++.++.. +.+|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 80 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNT--VDLILLDVNLPDAEAIDGLVRLKRFDPSNA 80 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCC--CSEEEECC------CHHHHHHHHHHCTTSE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCC--CCEEEEeCCCCCCchHHHHHHHHHhCCCCe
Confidence 479999999999999999999987 77 78899999999999987 65 9999999999999999999999754 6788
Q ss_pred EE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006006 109 VI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 151 (665)
Q Consensus 109 VI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~~ 151 (665)
|| ...+.+...++++.||++||.||++.++|..++++++++..
T Consensus 81 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~ 126 (154)
T 2qsj_A 81 VALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI 126 (154)
T ss_dssp EEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence 87 44556778899999999999999999999999999887653
No 97
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.64 E-value=2.6e-15 Score=133.94 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=102.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC-Ccc
Q 006006 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLP 108 (665)
Q Consensus 30 fP~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~-~IP 108 (665)
...+++||||||++..+..++.+|+..++.|..+.++.+|++.++... ||+|| ||+++|+++++.|+..+ .+|
T Consensus 15 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----~~~~~g~~~~~~l~~~~~~~~ 88 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEKHSSIV 88 (137)
T ss_dssp CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSC--CSEEE----ECSTTHHHHHHHHHHHSTTSE
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCC--CCEEE----EcCccHHHHHHHHHhcCCCcc
Confidence 346689999999999999999999999999999999999999998876 99999 89999999999997656 788
Q ss_pred EE---ecCchHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHHh
Q 006006 109 VI---TDGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR 150 (665)
Q Consensus 109 VI---a~sd~e~a~kALe~GA~DYLlKPv-~~eEL~~aLq~Vlrk~ 150 (665)
|| ...+.+...++++.||++||.||+ +.++|..++++++++.
T Consensus 89 ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 89 VLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred EEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 77 456778889999999999999999 9999999999886543
No 98
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.64 E-value=7.8e-16 Score=159.83 Aligned_cols=115 Identities=28% Similarity=0.358 Sum_probs=103.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCcc
Q 006006 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~-~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IP 108 (665)
..+||||||++.++..++.+|.+ .++.|..+.++.+|++.+.... |||||+|+.||+|||+++++.|+.. +.+|
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ 95 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIK--PTVILQDLVMPGVDGLTLLAAYRGNPATRDIP 95 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHTTSTTTTTSC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHhcCcccCCCc
Confidence 36899999999999999999964 5899999999999999998876 9999999999999999999999853 4678
Q ss_pred EE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 109 VI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 109 VI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
|| ++.+.+++.+|++.||++||.||++.++|..+++.+++.
T Consensus 96 ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~~ 139 (358)
T 3bre_A 96 IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSRS 139 (358)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHHH
Confidence 77 567888999999999999999999999999999887543
No 99
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.64 E-value=2.7e-15 Score=132.05 Aligned_cols=115 Identities=21% Similarity=0.336 Sum_probs=100.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHc-CCCceEEEEeCCCCC-CCHHHHHHHHhcc-CCcc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRER-KGCFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLP 108 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~-k~~PDLVIlDI~MP~-mDGlELLe~Ir~~-~~IP 108 (665)
.+++||||||++..+..++.+|...++.|..+.++.+|++.+++. . ||+||+|+.||+ ++|++++++++.. +.+|
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~--~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ 81 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAA--IDGVVTDIRFCQPPDGWQVARVAREIDPNMP 81 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCC--CCEEEEESCCSSSSCHHHHHHHHHHHCTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCC--CCEEEEeeeCCCCCCHHHHHHHHHhcCCCCC
Confidence 357999999999999999999998899999999999999999876 5 999999999998 9999999999754 5678
Q ss_pred EE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 109 VI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 109 VI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
|| ...+.+...++++.| +||.||++.++|..+++++++..
T Consensus 82 ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 82 IVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp EEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTT
T ss_pred EEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcC
Confidence 77 345566666777665 79999999999999999988765
No 100
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.64 E-value=7.6e-16 Score=131.30 Aligned_cols=110 Identities=21% Similarity=0.240 Sum_probs=97.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCccE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IPV 109 (665)
+++||||||++..+..++.+|...++.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++.. +.+|+
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~--~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~i 78 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQ--PIVILMAWPPPDQSCLLLLQHLREHQADPHPPL 78 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhccccCCCCE
Confidence 368999999999999999999999999999999999999999876 9999999999999999999999754 56777
Q ss_pred E--e-cCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006006 110 I--T-DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147 (665)
Q Consensus 110 I--a-~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vl 147 (665)
| + ..+.. ++++.|+++||.||++.++|...+++++
T Consensus 79 i~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 79 VLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 6 2 23333 8899999999999999999998887653
No 101
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.63 E-value=1.2e-15 Score=163.32 Aligned_cols=116 Identities=22% Similarity=0.302 Sum_probs=100.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhccC-CccE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPV 109 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~-~gy~V~tAsngeEALelLre~-k~~PDLVIlDI~MP~mDGlELLe~Ir~~~-~IPV 109 (665)
.++||||||++..+..++.+|+. .++.|.++.++.+|++.++.. . |||||+|+.||+|||++++++++... ..+|
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~~--~DlvllDi~mP~~dG~ell~~l~~~~~~~~i 80 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGH--VDIAICDLQMSGMDGLAFLRHASLSGKVHSV 80 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHSC--EEEEEECSSCSSSCHHHHHHHHHHHTCEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCceE
Confidence 37999999999999999999998 578999999999999999874 5 99999999999999999999997654 4455
Q ss_pred E---ecCch-----HHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 110 I---TDGRV-----SAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 110 I---a~sd~-----e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
| ...+. ..+.+|++.||++||.||++.++|..+++++++..
T Consensus 81 i~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~ 129 (400)
T 3sy8_A 81 ILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARR 129 (400)
T ss_dssp EESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred EEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhh
Confidence 5 33333 45778999999999999999999999999988764
No 102
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.62 E-value=1e-15 Score=135.06 Aligned_cols=115 Identities=22% Similarity=0.351 Sum_probs=99.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE-
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI- 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI- 110 (665)
.++||||||++..+..++.+|+..++.|..+.++++|++.++.. ||+||+|+.||+++|++++++++.. +.+|||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~---~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNK---QDIIILDLMMPDMDGIEVIRHLAEHKSPASLIL 79 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCCT---TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhccC---CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEE
Confidence 47999999999999999999998888999999999999877542 9999999999999999999999754 667777
Q ss_pred -e-cCch-----HHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 -T-DGRV-----SAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 -a-~sd~-----e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
. ..+. +...++++.||++||.||++.++|..+++++..+.
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 80 ISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp EESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred EEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 3 3332 55667899999999999999999999999886543
No 103
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.60 E-value=1.2e-15 Score=145.23 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=99.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCccEE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~IPVI 110 (665)
.+++||||||++..+..++.+|...+|.|..+.++.+|+ .. .||+||+|+.||++||+ +++.++.. +.+|||
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~~--~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii 83 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----DV--PVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLV 83 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----SS--CCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEE
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----CC--CCCEEEEeCCCCccchH-HHHHHhccCCCCCEE
Confidence 357999999999999999999998899999888877776 23 39999999999999999 88888766 788887
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
++.+.+.+.++++.||++||.||++.++|..+++.+++..
T Consensus 84 ~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 84 ALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 5677888999999999999999999999999999887654
No 104
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.58 E-value=7e-17 Score=140.14 Aligned_cols=116 Identities=34% Similarity=0.454 Sum_probs=102.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEE-
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI- 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVI- 110 (665)
..+||||||++..+..++.+|...++.+..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+|+|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKT--PDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII 80 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCC--CSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEE
Confidence 358999999999999999999988899999999999999987655 999999999999999999999975 3567776
Q ss_pred --ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 111 --TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 111 --a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
...+.+...++++.||++||.||++.++|...+++++++.
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp BCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred EecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 4455567778999999999999999999999999987653
No 105
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.55 E-value=6.9e-15 Score=131.35 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=95.7
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHH-cCCCceEEEEeCCCCCCCHHHHHHHHhcc-CC
Q 006006 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MD 106 (665)
Q Consensus 29 ~fP~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre-~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-~~ 106 (665)
..+.+++||||||++..+..++.+|...++.|..+.++.+|++.++. .. ||+||+|+.||+++|+++++.++.. +.
T Consensus 11 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~--~dlvilD~~l~~~~g~~~~~~l~~~~~~ 88 (138)
T 2b4a_A 11 HHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLST--CDLLIVSDQLVDLSIFSLLDIVKEQTKQ 88 (138)
T ss_dssp ---CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGS--CSEEEEETTCTTSCHHHHHHHHTTSSSC
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCC
Confidence 45577899999999999999999999989999999999999999987 66 9999999999999999999999754 57
Q ss_pred ccEE-ec-C--chHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 107 LPVI-TD-G--RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 107 IPVI-a~-s--d~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
+|+| .. . +... .+++ |++||.||++.++|..+++++++
T Consensus 89 ~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 89 PSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp CEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCC
T ss_pred CCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHH
Confidence 8877 22 2 2223 4444 99999999999999999987654
No 106
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.54 E-value=6.3e-14 Score=148.89 Aligned_cols=115 Identities=29% Similarity=0.431 Sum_probs=98.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~-gy~-V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI 110 (665)
.+|||||||++..++.|+.+|+.. ++. |..+.++.+|++.+++.. ||+||+|+.||++||++++++|+....+|||
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~--pDlVllDi~mp~~dGlell~~l~~~~p~pVI 80 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFN--PDVLTLDVEMPRMDGLDFLEKLMRLRPMPVV 80 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEECCCSSSCHHHHHHHHHHSSCCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHhcCCCcEE
Confidence 479999999999999999999986 888 569999999999999877 9999999999999999999999866558887
Q ss_pred --e-cCch--HHHHHHHHcCCCeEEeCCCCH---------HHHHHHHHHHHHH
Q 006006 111 --T-DGRV--SAVMRGIRHGACDYLIKPIRE---------EELKNIWQHVVRK 149 (665)
Q Consensus 111 --a-~sd~--e~a~kALe~GA~DYLlKPv~~---------eEL~~aLq~Vlrk 149 (665)
. ..+. +...++++.||+|||.||++. ++|...++++.+.
T Consensus 81 vlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 81 MVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp EEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 2 2332 347889999999999999983 7777777776553
No 107
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.47 E-value=5.4e-14 Score=142.01 Aligned_cols=99 Identities=21% Similarity=0.298 Sum_probs=81.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE--
Q 006006 34 LRVLVVDDDITCLRILEQMLRRC-LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI-- 110 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~-gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI-- 110 (665)
.+||||||++.+++.|...|... ++.+.. .++.+++..+.... ||+||+|+.||+|||++++++++.. .+|||
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~-~~~~~~~~~~~~~~--~dlvllD~~mP~~~G~~~~~~lr~~-~~pvi~l 80 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDA-FDTLEGARHCQGDE--YVVALVDLTLPDAPSGEAVKVLLER-GLPVVIL 80 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEE-ESSTGGGTTCCTTT--EEEEEEESCBTTBTTSHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEE-eChHHHHHHhhcCC--CcEEEEeCCCCCCCHHHHHHHHHhC-CCCEEEE
Confidence 58999999999999999999754 777754 45556666554444 9999999999999999999999864 57877
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCCCCH
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKPIRE 136 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKPv~~ 136 (665)
++.+.+...+|++.||+|||.||+..
T Consensus 81 t~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 81 TADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp ECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 67788889999999999999999643
No 108
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.41 E-value=2.2e-13 Score=111.90 Aligned_cols=62 Identities=65% Similarity=1.082 Sum_probs=59.4
Q ss_pred CCCCCchhhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHH
Q 006006 214 TTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 280 (665)
Q Consensus 214 ~sKKprvvfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~ 280 (665)
..+|+|++|+.|+|..|+++|.++|.++|.||+||++|+++|+|+++|++|+ |+|+..+||.
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHL-----QKYR~~l~r~ 63 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL-----QKFRVALKKV 63 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHH-----HHHHHHHHSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHH-----HHHHHHHHcc
Confidence 3578999999999999999999999999999999999999999999999999 9999999985
No 109
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.39 E-value=3.4e-13 Score=156.56 Aligned_cols=116 Identities=13% Similarity=0.194 Sum_probs=101.0
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC----CCHHHHHHHH
Q 006006 34 LRVLVVDDDI-TC-------LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD----MDGFKLLEHI 101 (665)
Q Consensus 34 irVLIVDDD~-~i-------re~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~----mDGlELLe~I 101 (665)
|+|||||||+ .+ ++.|+..|+..+|.|..+.++++|++.++... .||+||+|++||+ +||++++++|
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~-~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNE-AIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTC-CCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCC-CCcEEEEeCCCCcccccccHHHHHHHH
Confidence 5899999999 88 99999999999999999999999999998652 3999999999999 9999999999
Q ss_pred hcc-CCccEEe---cCc-hHHHHHHHHcCCCeEEeCCCCHHH-HHHHHHHHHHHh
Q 006006 102 GLE-MDLPVIT---DGR-VSAVMRGIRHGACDYLIKPIREEE-LKNIWQHVVRKR 150 (665)
Q Consensus 102 r~~-~~IPVIa---~sd-~e~a~kALe~GA~DYLlKPv~~eE-L~~aLq~Vlrk~ 150 (665)
|+. ..+|||. ..+ .+....++..||+|||.||++..| |...|+.++++.
T Consensus 80 R~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 80 HERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp HHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 865 5799982 222 344567899999999999999999 888888888764
No 110
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=99.18 E-value=6.6e-12 Score=110.95 Aligned_cols=61 Identities=15% Similarity=0.187 Sum_probs=58.2
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.|++++|.+|.+|++.+||++|. +||..+++++.|||..+||.|..||++.|||++|+||+
T Consensus 41 ~fk~~~G~s~~~~~~~~Rl~~A~-----~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 101 (108)
T 3oou_A 41 LFQKEMGEHFTDYLNRYRVNYAK-----EELLQTKDNLTIIAGKSGYTDMAYFYRQFKKHTGETPN 101 (108)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHcCCCChHHHHHHHHHHhCcCHH
Confidence 79999999999999999999995 77778999999999999999999999999999999996
No 111
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=99.17 E-value=5.6e-12 Score=111.25 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=58.2
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.|++++|.+|.+|++.+||++|. +||..+++++.|||..+||.|..||++.|||++|+||+
T Consensus 40 ~fk~~~G~s~~~~~~~~Rl~~A~-----~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 100 (107)
T 2k9s_A 40 LFRQQLGISVLSWREDQRISQAK-----LLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPS 100 (107)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999994 77777999999999999999999999999999999996
No 112
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=99.16 E-value=7.8e-12 Score=111.35 Aligned_cols=61 Identities=8% Similarity=0.028 Sum_probs=58.4
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.|++++|.+|.+||+.+||++|. +||..+++++.|||..+||.|..||++.|||++|+||+
T Consensus 43 ~fk~~~G~s~~~~~~~~Rl~~A~-----~lL~~~~~~i~eIA~~~Gf~~~s~F~r~Fk~~~G~tP~ 103 (113)
T 3oio_A 43 LFKQYLGTVPSKYYLELRLNRAR-----QLLQQTSKSIVQIGLACGFSSGPHFSSTYRNHFNITPR 103 (113)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 77778999999999999999999999999999999997
No 113
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=99.15 E-value=1.1e-11 Score=108.58 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=58.1
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.|++++|.+|.+|++.+||++|. ++|..+++++.|||..+||.|+.+|++.||+++|+||+
T Consensus 39 ~fk~~~g~s~~~~~~~~Rl~~A~-----~lL~~~~~si~~iA~~~Gf~~~s~F~r~Fk~~~G~tP~ 99 (103)
T 3lsg_A 39 MFKKNFGIPFQDYLLQKRMEKAK-----LLLLTTELKNYEIAEQVGFEDVNYFITKFKKYYQITPK 99 (103)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHCCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999994 77778999999999999999999999999999999995
No 114
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=99.14 E-value=1.4e-11 Score=108.75 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=57.6
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCC--CCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPG--LTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~--LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.|++++|.+|.+|++.+||++|. +||..++ +++.|||..+||.|..||++.|||++|+||+
T Consensus 38 ~fk~~~G~s~~~~~~~~Rl~~A~-----~lL~~~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 100 (108)
T 3mn2_A 38 AFQRSRGYSPMAFAKRVRLQHAH-----NLLSDGATPTTVTAAALSCGFSNLGHFARDYRDMFGEKPS 100 (108)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHH-----HHHHSSSSCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHH-----HHHHcCCCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcChH
Confidence 79999999999999999999995 7777777 7999999999999999999999999999996
No 115
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=99.13 E-value=1.2e-11 Score=112.93 Aligned_cols=61 Identities=8% Similarity=0.020 Sum_probs=58.5
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.|++++|.+|.+||+.+||++|+ +||..+++++.+||..|||.|..||++.|||++|+||+
T Consensus 47 ~fk~~~G~s~~~~l~~~Rl~~A~-----~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 107 (129)
T 1bl0_A 47 MFKKETGHSLGQYIRSRKMTEIA-----QKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPH 107 (129)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 79999999999999999999995 77778999999999999999999999999999999998
No 116
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=99.08 E-value=3.7e-11 Score=108.21 Aligned_cols=60 Identities=13% Similarity=0.259 Sum_probs=57.1
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.|++. |.+|.+||+.+||++|. +||..+++++.|||..|||.|+.||++.|||++|+||+
T Consensus 43 ~fk~~-G~s~~~~~~~~Rl~~A~-----~lL~~~~~si~eIA~~~Gf~~~s~F~r~Fk~~~G~tP~ 102 (120)
T 3mkl_A 43 KLREE-ETSYSQLLTECRMQRAL-----QLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPT 102 (120)
T ss_dssp HHHHT-TCCHHHHHHHHHHHHHH-----HHHTSTTCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHc-CCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 68887 99999999999999995 78888999999999999999999999999999999997
No 117
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=98.94 E-value=1.3e-10 Score=117.20 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=56.7
Q ss_pred hhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 221 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
.||. +|.+|.+||+++||++|+ +||..++++|.|||..|||.|+.||++.|||++|+||+
T Consensus 205 ~fk~-~G~t~~~~l~~~Rl~~A~-----~lL~~~~~si~eIA~~~Gf~~~s~F~r~Fkk~~G~tP~ 264 (276)
T 3gbg_A 205 ELES-RGVKFRELINSIRISYSI-----SLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPS 264 (276)
T ss_dssp HHHT-TTCCHHHHHHHHHHHHHH-----HHHHHTCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHH-cCCCHHHHHHHHHHHHHH-----HHHhCCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 6875 999999999999999995 77778999999999999999999999999999999997
No 118
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=98.84 E-value=4.2e-10 Score=114.26 Aligned_cols=63 Identities=8% Similarity=0.035 Sum_probs=59.0
Q ss_pred chhhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 219 RVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 219 rvvfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
+..|++++|.+|.+|++++||++|+ +||..+++++.|||..+||.|..+|++.|||++|+||+
T Consensus 37 ~r~f~~~~g~s~~~~~~~~Rl~~a~-----~~L~~~~~~i~~ia~~~Gf~~~~~f~r~fk~~~g~~P~ 99 (292)
T 1d5y_A 37 QRMFKDVTGHAIGAYIRARRLSKSA-----VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPA 99 (292)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHH-----HHHhcCCCCHHHHHHHcCCCCHHHHHHHHHHHHCcChH
Confidence 3479999999999999999999994 67778999999999999999999999999999999996
No 119
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.83 E-value=2.3e-09 Score=103.74 Aligned_cols=89 Identities=22% Similarity=0.372 Sum_probs=74.2
Q ss_pred CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCccEE-ecCchHHHHHHHHcCCCeEEeCC
Q 006006 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI-TDGRVSAVMRGIRHGACDYLIKP 133 (665)
Q Consensus 58 y~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IPVI-a~sd~e~a~kALe~GA~DYLlKP 133 (665)
+.|..+.++.+|++.+++.. |||||+|+.||+++|++++++|+.. ..+|++ .....+.+.++++.||++|+.||
T Consensus 6 ~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp 83 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNT 83 (237)
T ss_dssp EEEECCCSSSTTHHHHHHHC--CSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESH
T ss_pred EEEEECCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCC
Confidence 45566889999999999877 9999999999999999999998643 346666 55567888999999999999999
Q ss_pred --CCHHHHHHHHHHHHH
Q 006006 134 --IREEELKNIWQHVVR 148 (665)
Q Consensus 134 --v~~eEL~~aLq~Vlr 148 (665)
++..+|...+.+.+.
T Consensus 84 ~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 84 AAVENPSLITQIAQTFG 100 (237)
T ss_dssp HHHHCTHHHHHHHHHHT
T ss_pred cccChHHHHHHHHHHhC
Confidence 777788877776654
No 120
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=98.77 E-value=1.5e-09 Score=115.80 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=58.7
Q ss_pred hhhHHHHhHHHHHHHHHhcccccchHHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 220 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 220 vvfK~Elg~tFvdyLn~lRIeKA~PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
..|++++|.+|.+|++++|+++|+ +||..+++++.|||..+||.|+.+|++.|||++|+||+
T Consensus 340 r~f~~~~g~s~~~~~~~~r~~~a~-----~~L~~~~~~i~~ia~~~Gf~~~~~f~~~Fk~~~g~tP~ 401 (412)
T 4fe7_A 340 KRFKEEVGETIHAMIHAEKLEKAR-----SLLISTTLSINEISQMCGYPSLQYFYSVFKKAYDTTPK 401 (412)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHSSSCHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHhcCCCCHHHHHHHcCCCCHHHHHHHHHHHHCcCHH
Confidence 379999999999999999999995 77778999999999999999999999999999999996
No 121
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.74 E-value=1.5e-07 Score=101.32 Aligned_cols=115 Identities=22% Similarity=0.298 Sum_probs=93.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCcc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~---~~IP 108 (665)
.+.+|++|||+...+..+...|.. .+.+....+..+++. ..... ||+|++|+.||+|||+++++.++.. ..+|
T Consensus 151 ~~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~~~--~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~p 226 (459)
T 1w25_A 151 LGGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAGGP--VDLVIVNAAAKNFDGLRFTAALRSEERTRQLP 226 (459)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHHSS--CSEEEEETTCSSSCHHHHHHHHHTSGGGTTCC
T ss_pred CCCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hccCC--CCEEEEecCCCCCcHHHHHHHHHhCccccCCc
Confidence 346999999999988888888865 466777888888863 34443 9999999999999999999999743 4677
Q ss_pred EE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 109 VI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 109 VI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
+| ...+.....++++.|++||+.||++.+++...+..+++.+
T Consensus 227 ii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 227 VLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 77 4556667788999999999999999999988887776554
No 122
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=97.37 E-value=0.0001 Score=67.05 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=45.0
Q ss_pred HHHHHHhcccccchHHHHHHhC-CCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 006006 231 VSAVNQLGIDKAVPKRILELMN-VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 286 (665)
Q Consensus 231 vdyLn~lRIeKA~PKkILeLL~-~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~ 286 (665)
..++...++++|. ++|. .+++++.+||.++||+ ..||++.||+++|+||+
T Consensus 73 ~~~~~~~~l~~a~-----~~i~~~~~~sl~~lA~~~g~S-~~~f~r~Fk~~~G~tp~ 123 (133)
T 1u8b_A 73 PRQHRLDKITHAC-----RLLEQETPVTLEALADQVAMS-PFHLHRLFKATTGMTPK 123 (133)
T ss_dssp HHHHHHHHHHHHH-----HHTCSSSCCCHHHHHHHHTSC-HHHHHHHHHHHTSSCHH
T ss_pred cccchHHHHHHHH-----HHHHhcCCCCHHHHHHHHCcC-HHHHHHHHHHHHCcCHH
Confidence 5788888888884 7777 7899999999999997 99999999999999996
No 123
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=96.01 E-value=0.0058 Score=60.80 Aligned_cols=96 Identities=15% Similarity=0.145 Sum_probs=67.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT 111 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa 111 (665)
.+.+||||||++..++.|..+|...|+.|..+.+. ....+|++|+|..+|...+.+ .+..+.
T Consensus 10 ~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~---------~~~~~~~ii~d~~~~~~~~~~---------~~i~~~ 71 (254)
T 2ayx_A 10 SGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ---------EPTPEDVLITDEVVSKKWQGR---------AVVTFC 71 (254)
T ss_dssp TTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC---------CCCTTCEEEEESSCSCCCCSS---------EEEEEC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC---------CCCcCcEEEEcCCCccccccc---------eEEEEe
Confidence 56799999999999999999999999999887641 123489999999998865421 011111
Q ss_pred cCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 112 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 112 ~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
...... ....+...++.||+...+|...+.++..
T Consensus 72 ~~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 72 RRHIGI---PLEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp SSCCCS---CCTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred cccCCC---cccccCCceeccccchHHHHHHHHHHhh
Confidence 111000 0123456899999999998888877653
No 124
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=95.04 E-value=0.43 Score=45.04 Aligned_cols=117 Identities=13% Similarity=0.120 Sum_probs=82.2
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC-C-CHHHHHHHHh
Q 006006 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-M-DGFKLLEHIG 102 (665)
Q Consensus 32 ~girVLIV----DDD~~ire~Lk~lL~~~gy~V~t---AsngeEALelLre~k~~PDLVIlDI~MP~-m-DGlELLe~Ir 102 (665)
.+.+|++. |.|..=...+..+|+..||+|.. ....++.++.+++.. ||+|.+-..+.. + .--++++.++
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~--~diV~lS~~~~~~~~~~~~~i~~L~ 94 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQED--VDVIGVSILNGAHLHLMKRLMAKLR 94 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTT--CSEEEEEESSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEeechhhHHHHHHHHHHHH
Confidence 45789998 88888899999999999999973 457788999998876 999999887653 1 2234555665
Q ss_pred cc--CCccEE--ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 103 LE--MDLPVI--TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 103 ~~--~~IPVI--a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
+. .+++|+ +..-......+.+.|++.++..--+.++....+++++..+
T Consensus 95 ~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 95 ELGADDIPVVLGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp HTTCTTSCEEEEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHh
Confidence 54 357877 3222222334567999876665556667777777766554
No 125
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=94.49 E-value=0.04 Score=63.90 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccEEecCch---HHH-H
Q 006006 45 CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVITDGRV---SAV-M 119 (665)
Q Consensus 45 ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPVIa~sd~---e~a-~ 119 (665)
..+.|...|+..+|+|..+.+.++|+.++++.. +++.||+|+.|+ +.+++++|+. ...+||+...+. +.+ .
T Consensus 18 ~i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~~-~i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~ 93 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYPNDRDDLLKLIENNA-RLCGVIFDWDKY---NLELCEEISKMNENLPLYAFANTYSTLDVSL 93 (715)
T ss_dssp HHHHHHHHHHHTTCEEECCSSHHHHHHHHHHCT-TEEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEECCTTCCCCGGG
T ss_pred HHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhCC-CceEEEEecccc---HHHHHHHHHHhCCCCCEEEEecCCcccccch
Confidence 344556777788999999999999999999874 589999999886 6889999974 578999821111 111 1
Q ss_pred HHHHcCCCeEEeCCCC-HHHHHHHHHHHHHHh
Q 006006 120 RGIRHGACDYLIKPIR-EEELKNIWQHVVRKR 150 (665)
Q Consensus 120 kALe~GA~DYLlKPv~-~eEL~~aLq~Vlrk~ 150 (665)
+ .-.++++|+.+..+ .+.+...|.+++++.
T Consensus 94 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 124 (715)
T 3n75_A 94 N-DLRLQISFFEYALGAAEDIANKIKQTTDEY 124 (715)
T ss_dssp T-TSCCEEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred h-hhhccCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 1 13578999998864 455555555554443
No 126
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=94.30 E-value=0.2 Score=47.72 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHcCCCceEEEEeC-CCCCCCH--HHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEE------eC
Q 006006 65 QAAVALDILRERKGCFDVVLSDV-HMPDMDG--FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYL------IK 132 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI-~MP~mDG--lELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYL------lK 132 (665)
+..+.++.+.... ..+++++++ .++.++| .+++++++...++|+| +..+.+...++++.||++++ .+
T Consensus 131 ~~~~~i~~~~~~~-~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKRG-AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHHT-CSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhcC-CCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 4566666666553 367999997 6666776 4577777766789998 56678889999999999985 78
Q ss_pred CCCHHHHHHHHH
Q 006006 133 PIREEELKNIWQ 144 (665)
Q Consensus 133 Pv~~eEL~~aLq 144 (665)
|++..++++.++
T Consensus 210 ~~~~~~~~~~l~ 221 (237)
T 3cwo_X 210 EIDVRELKEYLK 221 (237)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999999877554
No 127
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=93.95 E-value=0.031 Score=48.52 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=33.6
Q ss_pred HHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 247 ILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 247 ILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
|.+.+.+..+++.+||.++|. +..||.+.||+.+|+||+.
T Consensus 12 i~~~~~~~~~~~~~lA~~~~~-S~~~l~r~fk~~~G~s~~~ 51 (107)
T 2k9s_A 12 ISDHLADSNFDIASVAQHVCL-SPSRLSHLFRQQLGISVLS 51 (107)
T ss_dssp HHHTSSCSSCCHHHHHHHTTS-CHHHHHHHHHHHHSSCHHH
T ss_pred HHHHhccCCCCHHHHHHHHCC-CHHHHHHHHHHHHCcCHHH
Confidence 334444478999999999997 6799999999999999974
No 128
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=93.81 E-value=0.056 Score=48.31 Aligned_cols=105 Identities=18% Similarity=0.126 Sum_probs=73.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCC-CCCCHHHHHHHHhccCCccEE-e
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHM-PDMDGFKLLEHIGLEMDLPVI-T 111 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~M-P~mDGlELLe~Ir~~~~IPVI-a 111 (665)
-.||+|-.|-.+.-.+++++....|.++......+ .-..|+|+|...+ |.. -+ ..++-...++.|+ .
T Consensus 13 ~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~~--------e~~AdlIfCEYlLLPe~-if--S~k~~~~~dliVLfD 81 (121)
T 3q7r_A 13 KHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYKQ--------ELSADLVVCEYSLLPRE-IR--SPKSLEGSFVLVLLD 81 (121)
T ss_dssp EEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCCC--------CTTEEEEEEEGGGSCTT-CC--CCTTCCSCEEEEEES
T ss_pred cEEEEEecCchhhHHHHHhcCCcceeEEeccccCC--------cccceeEEEeeecChHH-hc--CCCCCCcccEEEEeh
Confidence 47889988888888999999877899876543322 1137999999855 331 00 0011112333344 3
Q ss_pred cCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 112 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 112 ~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
.-+.+...+.+..||. ||+.|+.+.-|..+|+..++..
T Consensus 82 ~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 82 FFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp SCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred hhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 4466778899999999 9999999999999999887753
No 129
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=93.80 E-value=0.037 Score=48.00 Aligned_cols=38 Identities=13% Similarity=-0.034 Sum_probs=32.3
Q ss_pred HHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 248 LELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 248 LeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
.+.+. ..+++.+||.++|++ ..||.+.||+.+|+||..
T Consensus 12 ~~~~~-~~~~~~~lA~~~~~s-~~~l~r~fk~~~G~s~~~ 49 (108)
T 3mn2_A 12 EANWM-RPITIEKLTALTGIS-SRGIFKAFQRSRGYSPMA 49 (108)
T ss_dssp HHHTT-SCCCHHHHHHHHTCC-HHHHHHHHHHHTSSCHHH
T ss_pred HHccc-CCCCHHHHHHHHCCC-HHHHHHHHHHHhCcCHHH
Confidence 34443 459999999999996 899999999999999974
No 130
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=92.84 E-value=0.048 Score=47.73 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=29.9
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
..+++.+||.++|+ +..||.+.||+.+|+||..
T Consensus 22 ~~~~~~~lA~~~~~-S~~~l~r~fk~~~G~s~~~ 54 (113)
T 3oio_A 22 EPLSTDDIAYYVGV-SRRQLERLFKQYLGTVPSK 54 (113)
T ss_dssp SCCCHHHHHHHHTS-CHHHHHHHHHHHTSSCHHH
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 45999999999998 5899999999999999974
No 131
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=92.68 E-value=0.11 Score=44.57 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=34.4
Q ss_pred HHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 247 ILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 247 ILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
|.+.+..+.+++.+||.++|.+ ..||.+.||+.+|+||+.
T Consensus 11 i~~~~~~~~~~~~~lA~~~~~S-~~~l~r~fk~~~g~s~~~ 50 (103)
T 3lsg_A 11 IEESYTDSQFTLSVLSEKLDLS-SGYLSIMFKKNFGIPFQD 50 (103)
T ss_dssp HHHHTTCTTCCHHHHHHHTTCC-HHHHHHHHHHHHSSCHHH
T ss_pred HHHHccCCCCCHHHHHHHHCcC-HHHHHHHHHHHHCcCHHH
Confidence 4455667799999999999975 689999999999999974
No 132
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=91.99 E-value=0.14 Score=44.37 Aligned_cols=33 Identities=9% Similarity=0.160 Sum_probs=30.2
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
..+++.+||.++|. +..||.+.||+.+|+||..
T Consensus 20 ~~~~~~~lA~~~~~-S~~~l~r~fk~~~G~s~~~ 52 (108)
T 3oou_A 20 EGMSLKTLGNDFHI-NAVYLGQLFQKEMGEHFTD 52 (108)
T ss_dssp SCCCHHHHHHHHTS-CHHHHHHHHHHHHSSCHHH
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 47999999999998 5899999999999999974
No 133
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=89.30 E-value=0.21 Score=44.86 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=29.8
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
..+++.+||.++|. +..||.+.||+.+|+||+.
T Consensus 26 ~~~sl~~lA~~~~~-S~~~l~r~fk~~~G~s~~~ 58 (129)
T 1bl0_A 26 SPLSLEKVSERSGY-SKWHLQRMFKKETGHSLGQ 58 (129)
T ss_dssp SCCCCHHHHHHSSS-CHHHHHHHHHHHHSSCHHH
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 34999999999998 5899999999999999984
No 134
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=88.69 E-value=4.1 Score=41.89 Aligned_cols=104 Identities=16% Similarity=0.135 Sum_probs=69.7
Q ss_pred eCCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHHHHHhccCCccEE--
Q 006006 40 DDDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGLEMDLPVI-- 110 (665)
Q Consensus 40 DDD~~ire~Lk~lL~~~gy~V~--tAsngeEALelLre~k~~PDLVIlDI~MP-----~mDGlELLe~Ir~~~~IPVI-- 110 (665)
.|.....+..+.+ .+.|+.|. ++.+...|..+.+ .. +++| +.+-.| +..-+++++.|++..++|||
T Consensus 119 pD~~~tv~aa~~L-~~~Gf~Vlpy~~dd~~~akrl~~-~G--~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~e 193 (265)
T 1wv2_A 119 PNVVETLKAAEQL-VKDGFDVMVYTSDDPIIARQLAE-IG--CIAV-MPLAGLIGSGLGICNPYNLRIILEEAKVPVLVD 193 (265)
T ss_dssp BCHHHHHHHHHHH-HTTTCEEEEEECSCHHHHHHHHH-SC--CSEE-EECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEE
T ss_pred cCHHHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHH-hC--CCEE-EeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEe
Confidence 4444445554444 45588876 4556666655544 33 7877 554443 22237899999888899999
Q ss_pred -ecCchHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 006006 111 -TDGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVR 148 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLl-----KPv~~eEL~~aLq~Vlr 148 (665)
.....+.+.+|+++||++.+. |--++..+.+.+..++.
T Consensus 194 GGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 237 (265)
T 1wv2_A 194 AGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIV 237 (265)
T ss_dssp SCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 467889999999999999875 44456777666666554
No 135
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=87.49 E-value=2.2 Score=42.45 Aligned_cols=96 Identities=14% Similarity=0.190 Sum_probs=63.7
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCCCEE-EEECCHHHHHHHHHHcCCCceEEEEeCC------CCCCCHHHHHHHH
Q 006006 33 GLRVLVVDD----DITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH------MPDMDGFKLLEHI 101 (665)
Q Consensus 33 girVLIVDD----D~~ire~Lk~lL~~~gy~V-~tAsngeEALelLre~k~~PDLVIlDI~------MP~mDGlELLe~I 101 (665)
|..++++|- ++.....+.+.+++.+..+ ..+.+.+++..+.+. .+|+|.+..+ .+...++++++++
T Consensus 101 Gad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~li~~l 177 (229)
T 3q58_A 101 GADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK---GIEFIGTTLSGYTGPITPVEPDLAMVTQL 177 (229)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSSSCCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC---CCCEEEecCccCCCCCcCCCCCHHHHHHH
Confidence 455666553 2333333334445556555 477888898877654 3899865332 1234568999999
Q ss_pred hccCCccEE---ecCchHHHHHHHHcCCCeEEeC
Q 006006 102 GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 102 r~~~~IPVI---a~sd~e~a~kALe~GA~DYLlK 132 (665)
+.. ++|+| .-.+.+.+.++++.||++.+.=
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 178 SHA-GCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp HTT-TCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 766 89999 3457888999999999999864
No 136
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=85.75 E-value=6.3 Score=35.89 Aligned_cols=104 Identities=13% Similarity=-0.012 Sum_probs=70.6
Q ss_pred eCCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHHcCCCceEEEEeCCCCCC-C-HHHHHHHHhcc--CCccEE--
Q 006006 40 DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPDM-D-GFKLLEHIGLE--MDLPVI-- 110 (665)
Q Consensus 40 DDD~~ire~Lk~lL~~~gy~V~---tAsngeEALelLre~k~~PDLVIlDI~MP~m-D-GlELLe~Ir~~--~~IPVI-- 110 (665)
|-|..=...+..+|+..||+|. .....++.++.+++.. +|+|.+-..+... . --++++.+++. .+++|+
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETK--ADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHT--CSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEE
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 4455666778888999999986 5678899999999887 9999998877431 1 22355566543 257776
Q ss_pred ec-----CchHH-HHHHHHcCCCeEEeCCCCHHHHHHHHHH
Q 006006 111 TD-----GRVSA-VMRGIRHGACDYLIKPIREEELKNIWQH 145 (665)
Q Consensus 111 a~-----sd~e~-a~kALe~GA~DYLlKPv~~eEL~~aLq~ 145 (665)
.. .++.. ...+.+.|++.|..---+..++.+.+.+
T Consensus 92 G~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~ 132 (137)
T 1ccw_A 92 GNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKK 132 (137)
T ss_dssp ESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHH
T ss_pred CCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 21 22332 4457789998888766667776655544
No 137
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=84.21 E-value=4 Score=40.66 Aligned_cols=96 Identities=18% Similarity=0.219 Sum_probs=62.8
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCCCEE-EEECCHHHHHHHHHHcCCCceEEEEeCC------CCCCCHHHHHHHH
Q 006006 33 GLRVLVVDD----DITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH------MPDMDGFKLLEHI 101 (665)
Q Consensus 33 girVLIVDD----D~~ire~Lk~lL~~~gy~V-~tAsngeEALelLre~k~~PDLVIlDI~------MP~mDGlELLe~I 101 (665)
|..+++++- ++.....+.+.+++.+..+ ..+.+.+++..+.+. . +|+|.+..+ .....++++++++
T Consensus 101 Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~-G--ad~Ig~~~~g~t~~~~~~~~~~~~i~~l 177 (232)
T 3igs_A 101 GAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQRL-G--ADIIGTTMSGYTTPDTPEEPDLPLVKAL 177 (232)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT-T--CSEEECTTTTSSSSSCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC-C--CCEEEEcCccCCCCCCCCCCCHHHHHHH
Confidence 445555543 2333333444445556555 467888888777653 2 898865322 1223468999999
Q ss_pred hccCCccEE---ecCchHHHHHHHHcCCCeEEeC
Q 006006 102 GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 102 r~~~~IPVI---a~sd~e~a~kALe~GA~DYLlK 132 (665)
+.. ++|+| .-.+.+.+.++++.||++.+.=
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 178 HDA-GCRVIAEGRYNSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp HHT-TCCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred Hhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEe
Confidence 766 89999 3456888999999999998863
No 138
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=84.02 E-value=0.35 Score=48.42 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=31.0
Q ss_pred CCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 253 VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 253 ~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
...+++.++|.++|++ ..||++.||+.+|+||..
T Consensus 17 ~~~~~~~~la~~~~~s-~~~l~r~f~~~~g~s~~~ 50 (292)
T 1d5y_A 17 DQPLSLDNVAAKAGYS-KWHLQRMFKDVTGHAIGA 50 (292)
T ss_dssp SSSCCCHHHHTTTSSC-HHHHHHHHHHHHSSCHHH
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHHHHHCcCHHH
Confidence 5789999999999985 899999999999999974
No 139
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=82.34 E-value=2.9 Score=43.94 Aligned_cols=106 Identities=14% Similarity=0.100 Sum_probs=73.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCcc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRC---LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~---gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IP 108 (665)
..+|++|+|.|+...+.|..++... .+.+..+++.+.+.+.+++.+ +||+|+|-.+.... ..+.....+.
T Consensus 20 ~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~~--~dilli~e~~~~~~-----~~~~~~~~v~ 92 (373)
T 3fkq_A 20 MKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYR--IDVLIAEEDFNIDK-----SEFKRNCGLA 92 (373)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHT--CSEEEEETTCCCCG-----GGGCSSCEEE
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhcCC--CCEEEEcchhhhhh-----hhhcccCcEE
Confidence 4589999999999999999999753 688999999999999998876 99999998776521 1222222333
Q ss_pred EEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 109 VITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 109 VIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
++....... ...-...+.|--+.+++.+.+..+...
T Consensus 93 ~l~~~~~~~-----~~~~~~~i~kyq~~~~i~~ei~~~~~e 128 (373)
T 3fkq_A 93 YFTGTPGIE-----LIKDEIAICKYQRVDVIFKQILGVYSD 128 (373)
T ss_dssp EEESCTTCC-----EETTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred EEECCCCCC-----cCCCCceeeccCCHHHHHHHHHHHHhh
Confidence 333221100 011234688988998888777666543
No 140
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=79.11 E-value=10 Score=39.04 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=68.6
Q ss_pred EeCCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCCCC-----HHHHHHHHhc-cCC-ccE
Q 006006 39 VDDDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMD-----GFKLLEHIGL-EMD-LPV 109 (665)
Q Consensus 39 VDDD~~ire~Lk~lL~~~gy~V~--tAsngeEALelLre~k~~PDLVIlDI~MP~mD-----GlELLe~Ir~-~~~-IPV 109 (665)
.-|.....+..+.+.+. ||.|. ...+...|..+.+ .. +++| +++-.|-.. -.++++.+++ ..+ +||
T Consensus 107 ~pD~~~tv~aa~~L~k~-Gf~Vlpy~~~D~~~ak~l~~-~G--~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPV 181 (268)
T 2htm_A 107 LPDPLETLKAAERLIEE-DFLVLPYMGPDLVLAKRLAA-LG--TATV-MPLAAPIGSGWGVRTRALLELFAREKASLPPV 181 (268)
T ss_dssp CCCHHHHHHHHHHHHHT-TCEECCEECSCHHHHHHHHH-HT--CSCB-EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCB
T ss_pred CcCHHHHHHHHHHHHHC-CCEEeeccCCCHHHHHHHHh-cC--CCEE-EecCccCcCCcccCCHHHHHHHHHhcCCCCeE
Confidence 34444555555555554 88876 4456655544444 44 7877 565444222 2567888876 677 999
Q ss_pred E---ecCchHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 006006 110 I---TDGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVR 148 (665)
Q Consensus 110 I---a~sd~e~a~kALe~GA~DYLl-----KPv~~eEL~~aLq~Vlr 148 (665)
| .-.+.+.+.+|+++||++.+. |--++..+.+.+.+++.
T Consensus 182 I~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 228 (268)
T 2htm_A 182 VVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVE 228 (268)
T ss_dssp EEESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 9 467889999999999999875 44556777666666554
No 141
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=78.02 E-value=1.5 Score=38.61 Aligned_cols=32 Identities=19% Similarity=0.061 Sum_probs=28.2
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
..+++.+||.++|++. .||.+.||+. |+||+.
T Consensus 22 ~~~~~~~lA~~~~~S~-~~l~r~fk~~-G~s~~~ 53 (120)
T 3mkl_A 22 HEWTLARIASELLMSP-SLLKKKLREE-ETSYSQ 53 (120)
T ss_dssp SCCCHHHHHHHTTCCH-HHHHHHHHHT-TCCHHH
T ss_pred CCCCHHHHHHHHCcCH-HHHHHHHHHc-CCCHHH
Confidence 4799999999999855 7999999997 999973
No 142
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=76.65 E-value=21 Score=35.84 Aligned_cols=109 Identities=16% Similarity=0.097 Sum_probs=73.7
Q ss_pred CCccEEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCH-HHHHHHH
Q 006006 31 PAGLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHI 101 (665)
Q Consensus 31 P~girVLIV----DDD~~ire~Lk~lL~~~gy~V~t---AsngeEALelLre~k~~PDLVIlDI~MP~-mDG-lELLe~I 101 (665)
..+-+||++ |-|..=...+..+|+..||+|.. --..++.++.+++.. ||+|.+-..|.. +.. -++++.+
T Consensus 121 ~~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~--~d~V~lS~l~~~~~~~~~~~i~~l 198 (258)
T 2i2x_B 121 KTKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEK--PIMLTGTALMTTTMYAFKEVNDML 198 (258)
T ss_dssp CCSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHC--CSEEEEECCCTTTTTHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeeccCCHHHHHHHHHHH
Confidence 345688888 77788888999999999999853 356788888888887 999999887754 443 3466777
Q ss_pred hcc-CCccEE-e--cCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 006006 102 GLE-MDLPVI-T--DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 147 (665)
Q Consensus 102 r~~-~~IPVI-a--~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vl 147 (665)
++. ..++|+ + .-..+++ -+.||+.|-.-. .+....++.++
T Consensus 199 ~~~~~~~~v~vGG~~~~~~~~---~~igad~~~~da---~~av~~~~~l~ 242 (258)
T 2i2x_B 199 LENGIKIPFACGGGAVNQDFV---SQFALGVYGEEA---ADAPKIADAII 242 (258)
T ss_dssp HTTTCCCCEEEESTTCCHHHH---HTSTTEEECSST---THHHHHHHHHH
T ss_pred HhcCCCCcEEEECccCCHHHH---HHcCCeEEECCH---HHHHHHHHHHH
Confidence 643 558877 2 2233332 377987775533 44444444443
No 143
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=72.48 E-value=2.4 Score=41.94 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=28.5
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 254 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 254 ~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
..+++.++|.++|. +.+||.+.||+ +|+||+.
T Consensus 184 ~~~sl~~lA~~~~~-S~~~l~r~fk~-~G~t~~~ 215 (276)
T 3gbg_A 184 RNWRWADICGELRT-NRMILKKELES-RGVKFRE 215 (276)
T ss_dssp SCCCHHHHHHHHTC-CHHHHHHHHHT-TTCCHHH
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHH-cCCCHHH
Confidence 37899999999987 67899999987 9999974
No 144
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=72.31 E-value=26 Score=37.39 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=63.8
Q ss_pred CccEEEEEe----CCHHHHHHHHHHHHhC-CCEE--EEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------C
Q 006006 32 AGLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (665)
Q Consensus 32 ~girVLIVD----DD~~ire~Lk~lL~~~-gy~V--~tAsngeEALelLre~k~~PDLVIlDI~MP~------------m 92 (665)
.+..++++| +.+...+.++.+-+.. +..| ..+.+.++|..+.+.. .|.|.+-+. |+ .
T Consensus 119 aGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aG---AD~I~vG~g-pGs~~~tr~~~g~g~ 194 (366)
T 4fo4_A 119 AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAG---VSAVKVGIG-PGSICTTRIVTGVGV 194 (366)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT---CSEEEECSS-CSTTBCHHHHHCCCC
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcC---CCEEEEecC-CCCCCCcccccCccc
Confidence 456778775 3455666666666554 4444 3688999998887653 799988421 22 2
Q ss_pred CHHHHHHHHh---ccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 93 DGFKLLEHIG---LEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 93 DGlELLe~Ir---~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
..++++..+. ....+||| .-.+...+.+|+.+||+....
T Consensus 195 p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 195 PQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp CHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred chHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3455555553 24579999 345677889999999988765
No 145
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=71.86 E-value=21 Score=41.61 Aligned_cols=115 Identities=11% Similarity=-0.008 Sum_probs=78.5
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCC-C-CHHHHHHHHh
Q 006006 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-M-DGFKLLEHIG 102 (665)
Q Consensus 32 ~girVLIV----DDD~~ire~Lk~lL~~~gy~V~tA---sngeEALelLre~k~~PDLVIlDI~MP~-m-DGlELLe~Ir 102 (665)
+..||+|. |.|..=...+..+|+..||+|... ...++.++.+.+.. +|+|.+-..|.. + ..-++++.|+
T Consensus 595 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~L~ 672 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELD 672 (727)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHhHHHHHHHHHHHHH
Confidence 44677776 556666667777888889999753 35689999998876 999999887653 2 2345666665
Q ss_pred cc--CCccEE-e--cCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 103 LE--MDLPVI-T--DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 103 ~~--~~IPVI-a--~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
+. .+++|+ + .... ....+.+.|++.|+.--.+..++...+.+.++.
T Consensus 673 ~~G~~~i~VivGG~~p~~-d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~~ 723 (727)
T 1req_A 673 KLGRPDILITVGGVIPEQ-DFDELRKDGAVEIYTPGTVIPESAISLVKKLRA 723 (727)
T ss_dssp HTTCTTSEEEEEESCCGG-GHHHHHHTTEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEcCCCccc-cHHHHHhCCCCEEEcCCccHHHHHHHHHHHHHH
Confidence 43 257777 2 2222 223456899999998667777777766666544
No 146
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=71.07 E-value=7.6 Score=38.16 Aligned_cols=97 Identities=13% Similarity=0.064 Sum_probs=67.2
Q ss_pred CCccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHHcCCCceEEEE--eCCCC-CCC-HHHHHH
Q 006006 31 PAGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLS--DVHMP-DMD-GFKLLE 99 (665)
Q Consensus 31 P~girVLIV----DDD~~ire~Lk~lL~~~gy~V~tA---sngeEALelLre~k~~PDLVIl--DI~MP-~mD-GlELLe 99 (665)
+.+-+|++. |-|.+=...+..+|+..||+|... -..++.++.++++. ||+|.+ -..|. .+. --++++
T Consensus 90 ~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~--~d~v~l~~S~l~~~~~~~~~~~i~ 167 (215)
T 3ezx_A 90 EEAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHK--GEKVLLVGSALMTTSMLGQKDLMD 167 (215)
T ss_dssp --CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTT--TSCEEEEEECSSHHHHTHHHHHHH
T ss_pred CCCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcC--CCEEEEEchhcccCcHHHHHHHHH
Confidence 344688887 778888888999999999998743 46788889998887 999999 87664 233 334666
Q ss_pred HHhcc-C--CccEE---ecCchHHHHHHHHcCCCeEEeC
Q 006006 100 HIGLE-M--DLPVI---TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 100 ~Ir~~-~--~IPVI---a~sd~e~a~kALe~GA~DYLlK 132 (665)
.+++. . ++||+ ..-..+++ -+.||+.|-..
T Consensus 168 ~l~~~~~~~~v~v~vGG~~~~~~~a---~~iGad~~~~d 203 (215)
T 3ezx_A 168 RLNEEKLRDSVKCMFGGAPVSDKWI---EEIGADATAEN 203 (215)
T ss_dssp HHHHTTCGGGSEEEEESSSCCHHHH---HHHTCCBCCSS
T ss_pred HHHHcCCCCCCEEEEECCCCCHHHH---HHhCCeEEECC
Confidence 66654 2 57777 22233433 35699888653
No 147
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=69.75 E-value=18 Score=36.61 Aligned_cols=108 Identities=14% Similarity=0.124 Sum_probs=66.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~t--AsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI 110 (665)
.++++|+.+.+. +.++++++...-.|.. .-+.++..+.+.. .|++|+--.-.+.-|+.+++.+. ..+|||
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a--~G~PvI 311 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMA--AGTAVV 311 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHH--HTCEEE
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHH--cCCCEE
Confidence 456666666554 4455544432112222 2233444555543 47777653212333566777764 357888
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
+.+. ....+.+..|..+++..|-+.++|.+++.+++..
T Consensus 312 ~~~~-~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 349 (406)
T 2gek_A 312 ASDL-DAFRRVLADGDAGRLVPVDDADGMAAALIGILED 349 (406)
T ss_dssp ECCC-HHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHC
T ss_pred EecC-CcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 6544 4455778888899999999999999999988763
No 148
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=69.69 E-value=21 Score=36.55 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=76.7
Q ss_pred CccEEEEE----eCCHHHHHHHHHH--------HHhC-CCEEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC----
Q 006006 32 AGLRVLVV----DDDITCLRILEQM--------LRRC-LYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD---- 91 (665)
Q Consensus 32 ~girVLIV----DDD~~ire~Lk~l--------L~~~-gy~V~t---AsngeEALelLre~k~~PDLVIlDI~MP~---- 91 (665)
...+|++. |-|.+=...+..+ |+.. ||+|.- .-..++.++.++++. +|+|.+-..|..
T Consensus 119 ~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~--~d~VglS~l~t~~~~~ 196 (262)
T 1xrs_B 119 RKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELE--ADVLLVSQTVTQKNVH 196 (262)
T ss_dssp SCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCTTSHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeecCCccch
Confidence 45677665 6777777777777 8898 999864 346788999998877 999999988875
Q ss_pred CCH-HHHHHHHhcc---CCccEE-e--cCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 92 MDG-FKLLEHIGLE---MDLPVI-T--DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 92 mDG-lELLe~Ir~~---~~IPVI-a--~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
+.. -++++.+++. .+++|+ + .-+.++ +.+.||+.|..--....++.+.+...+..
T Consensus 197 ~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~~---a~~iGad~~~~da~~~~~~a~~l~~~~~~ 258 (262)
T 1xrs_B 197 IQNMTHLIELLEAEGLRDRFVLLCGGPRINNEI---AKELGYDAGFGPGRFADDVATFAVKTLND 258 (262)
T ss_dssp HHHHHHHHHHHHHTTCGGGSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCcCCHHH---HHHcCCeEEECCchHHHHHHHHHHHHHHh
Confidence 222 2345556543 237777 2 223333 56789998887777777776666554433
No 149
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=68.70 E-value=13 Score=35.79 Aligned_cols=95 Identities=13% Similarity=0.032 Sum_probs=67.1
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHh
Q 006006 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG 102 (665)
Q Consensus 32 ~girVLIV----DDD~~ire~Lk~lL~~~gy~V~tA---sngeEALelLre~k~~PDLVIlDI~MP~-mD-GlELLe~Ir 102 (665)
.+-+||++ |-|..=...+..+|+..||+|... -..++.++.+++.. ||+|.+-..+.. +. --++++.++
T Consensus 87 ~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~ 164 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQ--PDIVGMSALLTTTMMNMKSTIDALI 164 (210)
T ss_dssp CCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHC--CSEEEEECCSGGGTHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHH
Confidence 34588888 888888999999999999999753 35678888888877 999999887753 32 234566666
Q ss_pred cc---CCccEE-e--cCchHHHHHHHHcCCCeEEe
Q 006006 103 LE---MDLPVI-T--DGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 103 ~~---~~IPVI-a--~sd~e~a~kALe~GA~DYLl 131 (665)
+. +++||+ + .-+.+++ -+.||+.|..
T Consensus 165 ~~~~~~~~~v~vGG~~~~~~~~---~~~gad~~~~ 196 (210)
T 1y80_A 165 AAGLRDRVKVIVGGAPLSQDFA---DEIGADGYAP 196 (210)
T ss_dssp HTTCGGGCEEEEESTTCCHHHH---HHHTCSEECS
T ss_pred hcCCCCCCeEEEECCCCCHHHH---HHcCCeEEEC
Confidence 43 347877 2 2233333 4569987755
No 150
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=68.59 E-value=62 Score=31.05 Aligned_cols=55 Identities=11% Similarity=0.145 Sum_probs=42.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHHcCCCceEEEEe
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSD 86 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~-tAsngeEALelLre~k~~PDLVIlD 86 (665)
...+|+++--.+.+++.+++++.+...++. ...+.+++++.+++....+|+||.-
T Consensus 3 ~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISR 58 (196)
T 2q5c_A 3 LSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISR 58 (196)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEE
T ss_pred CCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEEC
Confidence 446899999999999999998887655654 5577888999887643358999864
No 151
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=68.56 E-value=23 Score=38.34 Aligned_cols=96 Identities=15% Similarity=0.295 Sum_probs=61.5
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHHcCCCceEEEEeCC-------C----CCCCHH
Q 006006 33 GLRVLVVD----DDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVH-------M----PDMDGF 95 (665)
Q Consensus 33 girVLIVD----DD~~ire~Lk~lL~~~gy~V~--tAsngeEALelLre~k~~PDLVIlDI~-------M----P~mDGl 95 (665)
+..++++| +.....+.++.+-+..+..|. .+.+.++|..+++.. +|.|++-+. . .+.-.+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~aG---AD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENG---ADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHTT---CSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHcC---CCEEEEeCCCCcCcccccccccchhHH
Confidence 45777775 233445555555444355443 688999998877643 899988321 0 012345
Q ss_pred HHHHHHhc---cCCccEEe---cCchHHHHHHHHcCCCeEEe
Q 006006 96 KLLEHIGL---EMDLPVIT---DGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 96 ELLe~Ir~---~~~IPVIa---~sd~e~a~kALe~GA~DYLl 131 (665)
+++..+.+ ...+|||+ -.+...+.+++.+||+....
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 66666642 35799993 45778899999999998765
No 152
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=67.46 E-value=30 Score=35.77 Aligned_cols=123 Identities=11% Similarity=0.133 Sum_probs=81.9
Q ss_pred CCCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-
Q 006006 26 VPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE- 104 (665)
Q Consensus 26 ~~d~fP~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~- 104 (665)
|.|.....+.|-+.-.++.....+.++|....|.+..+...++.++.++++++.+|.+|+... +.+-..+..++.+.
T Consensus 2 ~~~~~~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g 79 (289)
T 1r8j_A 2 MADIVLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEG 79 (289)
T ss_dssp ----CCCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTT
T ss_pred cccccccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcC
Confidence 456677789999999999999999999988899999999999999999988888999998761 22355677777543
Q ss_pred CCccEE-ecCchHHHHH----HHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 105 MDLPVI-TDGRVSAVMR----GIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 105 ~~IPVI-a~sd~e~a~k----ALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
.-+|+| ...+.....+ .+-....+.-...-..+.|...|.+++.+-
T Consensus 80 ~lLP~vil~~~~~~~~~~~~~~~~yh~aEv~l~~~ql~~l~~~Id~AI~~F 130 (289)
T 1r8j_A 80 VVVPAIVVGDRDSEDPDEPAKEQLYHSAELHLGIHQLEQLPYQVDAALAEF 130 (289)
T ss_dssp CCCCEEEESCCC------CCSSCSSBTTCEEECTTCGGGHHHHHHHHHHHH
T ss_pred ccccEEEeccCccccCCCCccceeccHHHHcCCHhHHHHHHHHHHHHHHHH
Confidence 557766 2221111100 011222233344445677877777777654
No 153
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=67.30 E-value=26 Score=41.04 Aligned_cols=117 Identities=10% Similarity=-0.024 Sum_probs=79.7
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCC-C-CHHHHHHHHh
Q 006006 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-M-DGFKLLEHIG 102 (665)
Q Consensus 32 ~girVLIV----DDD~~ire~Lk~lL~~~gy~V~tA---sngeEALelLre~k~~PDLVIlDI~MP~-m-DGlELLe~Ir 102 (665)
+..+|+|. |.|..=...+..+|+..||+|... ...++.++.+.+.. +|+|.+-..|.. + ..-++++.|+
T Consensus 603 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~Lr 680 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDAD--VHAVGVSTLAAGHKTLVPELIKELN 680 (762)
T ss_dssp SCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHHHHHHHHHHHHHHH
Confidence 44677776 455566667778888889999743 46789999988876 999999877653 2 2345666665
Q ss_pred cc--CCccEE-ec-CchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 103 LE--MDLPVI-TD-GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 103 ~~--~~IPVI-a~-sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
+. .+++|+ +- .-......+.+.|++.|...--+..+....+.+.+..+
T Consensus 681 ~~G~~dv~VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~~ 732 (762)
T 2xij_A 681 SLGRPDILVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKC 732 (762)
T ss_dssp HTTCTTSEEEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHHH
Confidence 43 257777 21 11212234568899999986668888877777776654
No 154
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=66.54 E-value=35 Score=31.05 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=72.6
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCEEEE-E--CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCcc
Q 006006 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVTT-C--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (665)
Q Consensus 33 girVLIVDDD~-~ire~Lk~lL~~~gy~V~t-A--sngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IP 108 (665)
.++++|+.+.+ .....++++++..+ .|.. . -+.++..+++.. .|++|+-... +.-|+.+++.+. ..+|
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~----ad~~l~ps~~-e~~~~~~~Ea~a--~G~P 141 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMC--LGAI 141 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECCSC-CSSCHHHHHHHH--TTCE
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHH----CCEEEECCCC-CCccHHHHHHHH--CCCC
Confidence 57888887754 35667777777765 4444 3 344466665542 6888885443 334677778774 4678
Q ss_pred EEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 109 VITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 109 VIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
||+.... ...+.+ .|..+++..|-+.++|.+++.+++.
T Consensus 142 vI~~~~~-~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 142 PIASAVG-GLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp EEEESCH-HHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred EEEeCCC-ChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 8865433 344555 7888999999999999999998876
No 155
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=66.34 E-value=2.5 Score=44.47 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=30.6
Q ss_pred CCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 006006 253 VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 287 (665)
Q Consensus 253 ~~~LtI~EVAs~VGYsD~qYF~k~FKK~~GvTP~~ 287 (665)
...+++.++|.++|+ +.+||.+.||+.+|+||+.
T Consensus 319 ~~~~~~~~~a~~~~~-s~~~l~r~f~~~~g~s~~~ 352 (412)
T 4fe7_A 319 CKGIKVDQVLDAVGI-SRSNLEKRFKEEVGETIHA 352 (412)
T ss_dssp GGTCCHHHHHHHTTC-CHHHHHHHHHHHHSSCHHH
T ss_pred cCCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 468999999999997 5689999999999999974
No 156
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=66.05 E-value=35 Score=32.11 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=47.1
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCccEE--ecCchHHHHHHHHcCCCeEEe
Q 006006 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVI--TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 62 tAsngeEALelLre~k~~PDLVIlDI~MP~-------mDGlELLe~Ir~~~~IPVI--a~sd~e~a~kALe~GA~DYLl 131 (665)
.+.+.+++..... .. +|.|+++-..|. ..+++.++++++..++|++ +--..+.+.++++.||+.+..
T Consensus 114 ~~~t~~e~~~~~~-~g--~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 114 SVYSLEEALEAEK-KG--ADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAV 189 (215)
T ss_dssp EESSHHHHHHHHH-HT--CSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHHTTTCSEEEE
T ss_pred ecCCHHHHHHHHh-cC--CCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcCHHHHHHHHHcCCCEEEE
Confidence 5678888766543 33 899998754443 3478888888765678888 222366777888899998754
No 157
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=63.81 E-value=22 Score=41.07 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=76.6
Q ss_pred ccEEEEE----eCCHHHHHHH----HHHHHhCCCEEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC----CCHH-H
Q 006006 33 GLRVLVV----DDDITCLRIL----EQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD----MDGF-K 96 (665)
Q Consensus 33 girVLIV----DDD~~ire~L----k~lL~~~gy~V~t---AsngeEALelLre~k~~PDLVIlDI~MP~----mDGl-E 96 (665)
..+|++. |-|..=...+ ..+|+..||+|.- .-..++.++.+.+.. ||+|.+-..|.. +..+ +
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~Eed--ADVVGLSsLLTt~dihL~~Mke 679 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIELK--ADAILASTIISHDDIHYKNMKR 679 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCGGGHHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCchhhHHHHHH
Confidence 5688888 5554444323 4678888999974 347899999999887 999999988875 3333 3
Q ss_pred HHHHHhcc---CCccEE---ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 97 LLEHIGLE---MDLPVI---TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 97 LLe~Ir~~---~~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
+++.+++. ..++|+ +.-+.++ |-+.||+.|..--....++...|...++.+
T Consensus 680 vIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~er 736 (763)
T 3kp1_A 680 IHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRREM 736 (763)
T ss_dssp HHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHHHh
Confidence 55556543 236776 2223333 347999999887777777777666655544
No 158
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=63.16 E-value=30 Score=36.69 Aligned_cols=97 Identities=15% Similarity=0.298 Sum_probs=60.0
Q ss_pred CccEEEEEe----CCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHHcCCCceEEEEeCCCC-----------CCCH
Q 006006 32 AGLRVLVVD----DDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMDG 94 (665)
Q Consensus 32 ~girVLIVD----DD~~ire~Lk~lL~~~gy~V~--tAsngeEALelLre~k~~PDLVIlDI~MP-----------~mDG 94 (665)
.+..++++| +...+.+.++.+-+..+..|. .+.+.++|..+++.. .|.|.+-+.-. +.-.
T Consensus 116 aGad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aG---aD~I~VG~~~Gs~~~tr~~~g~g~p~ 192 (361)
T 3khj_A 116 AGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENG---ADGIKVGIGPGSICTTRIVAGVGVPQ 192 (361)
T ss_dssp TTCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHTT---CSEEEECSSCCTTCCHHHHTCBCCCH
T ss_pred cCcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHcC---cCEEEEecCCCcCCCcccccCCCCCc
Confidence 345566664 334455566665555455443 678888888777543 89988732100 1223
Q ss_pred HHHHHHHh---ccCCccEEe---cCchHHHHHHHHcCCCeEEe
Q 006006 95 FKLLEHIG---LEMDLPVIT---DGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 95 lELLe~Ir---~~~~IPVIa---~sd~e~a~kALe~GA~DYLl 131 (665)
++++..+. ....+|||+ -.+.+.+.+++.+||+....
T Consensus 193 ~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 193 ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp HHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 45555552 234689993 45678889999999998765
No 159
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=62.64 E-value=87 Score=29.50 Aligned_cols=112 Identities=9% Similarity=-0.030 Sum_probs=64.1
Q ss_pred ccEEEEEeCCH--HHHHHHHHHHHhCCCEEEE----ECCHHHHHHHHHHcCCCceEEEEeCCCC----CCCHHHHHHHHh
Q 006006 33 GLRVLVVDDDI--TCLRILEQMLRRCLYNVTT----CSQAAVALDILRERKGCFDVVLSDVHMP----DMDGFKLLEHIG 102 (665)
Q Consensus 33 girVLIVDDD~--~ire~Lk~lL~~~gy~V~t----AsngeEALelLre~k~~PDLVIlDI~MP----~mDGlELLe~Ir 102 (665)
|...+++-+.+ .....+.+.+++.+..+.. ..+..+.++.+.+.. .|.|.++.... ...+++.+++++
T Consensus 77 Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g--~d~i~v~~g~~g~~~~~~~~~~i~~l~ 154 (211)
T 3f4w_A 77 GADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAG--ADMLAVHTGTDQQAAGRKPIDDLITML 154 (211)
T ss_dssp TCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHT--CCEEEEECCHHHHHTTCCSHHHHHHHH
T ss_pred CCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcC--CCEEEEcCCCcccccCCCCHHHHHHHH
Confidence 45566666654 3334455555555666543 234444445554444 78887763211 113577888887
Q ss_pred cc-CCccEE--ecCchHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHH
Q 006006 103 LE-MDLPVI--TDGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHV 146 (665)
Q Consensus 103 ~~-~~IPVI--a~sd~e~a~kALe~GA~DYLl-----KPv~~eEL~~aLq~V 146 (665)
+. +++|++ .--..+.+.++++.||+..+. +.-++.+-.+.+++.
T Consensus 155 ~~~~~~~i~~~gGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~ 206 (211)
T 3f4w_A 155 KVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQV 206 (211)
T ss_dssp HHCSSCEEEEESSCCTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHH
T ss_pred HHcCCCcEEEECCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHH
Confidence 65 478887 222467788899999998765 444554444444433
No 160
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=62.62 E-value=48 Score=33.16 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=40.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
.|++++.- |.-++|.+. ..+|||+..+.....+.++.| .+++..+ +.++|.+++.+++..
T Consensus 283 ad~~v~~s------g~~~lEA~a--~G~Pvi~~~~~~~~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~~ 342 (375)
T 3beo_A 283 SYLMLTDS------GGVQEEAPS--LGVPVLVLRDTTERPEGIEAG-TLKLAGT-DEETIFSLADELLSD 342 (375)
T ss_dssp CSEEEECC------HHHHHHHHH--HTCCEEECSSCCSCHHHHHTT-SEEECCS-CHHHHHHHHHHHHHC
T ss_pred CcEEEECC------CChHHHHHh--cCCCEEEecCCCCCceeecCC-ceEEcCC-CHHHHHHHHHHHHhC
Confidence 57777643 444666653 458888443322234557788 8999877 999999999998763
No 161
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=60.89 E-value=1.8 Score=47.70 Aligned_cols=100 Identities=10% Similarity=-0.102 Sum_probs=55.0
Q ss_pred ChhHHHHHHhcCCC--------CCcc-eeeeeccCCC----------------CCCCccEEEE--EeCCHHHHHHHHHHH
Q 006006 1 MAALQRIVQSSGGS--------GYGS-SRAADVAVPD----------------QFPAGLRVLV--VDDDITCLRILEQML 53 (665)
Q Consensus 1 Lai~~~~V~~mgGs--------g~Gs-~f~~~~~~~d----------------~fP~girVLI--VDDD~~ire~Lk~lL 53 (665)
|+++++++++|||. +.|+ .|.+.++++. ..+.|-+|.| .++.......+..+|
T Consensus 113 L~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~~~~~e~~~~I~~~l 192 (471)
T 1mu5_A 113 VKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIYEYI 192 (471)
T ss_dssp HHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEECCTTCCEEEEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccCCCCCCCEEEEEEEcCCcchHHHHHHHHH
Confidence 57999999999994 4444 5554443321 2234544444 333333334455554
Q ss_pred HhC-----CCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006006 54 RRC-----LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (665)
Q Consensus 54 ~~~-----gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir 102 (665)
... ++.+....++.+++...+....-|+. .+..||.++|+++...++
T Consensus 193 ~~~al~~p~v~i~l~~~~~~~~~~~r~~~~lp~~--~~~~~p~~~G~~l~~~~~ 244 (471)
T 1mu5_A 193 KRTYIITPYAEFIFKDPEGNVTYYPRLTNKIPKP--PQEVKPHPYGVDREEIKI 244 (471)
T ss_dssp HHHHHHCTTCEEEEECTTCCEEEECCCCCCCCCC--CCCCCCCGGGCCHHHHHH
T ss_pred HHHHhHCCCeEEEEEECCceEEEecccccccCCc--cceeecCCCchhHHHHHH
Confidence 432 55666665554444333221111333 567889999988877664
No 162
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=59.86 E-value=86 Score=31.84 Aligned_cols=84 Identities=12% Similarity=0.005 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhCCCEE-EEECCHHHHHHHHHHcCCCceEEEEeCC---CCCCCHHHHHHHHhcc-C-CccEE---ecCch
Q 006006 45 CLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH---MPDMDGFKLLEHIGLE-M-DLPVI---TDGRV 115 (665)
Q Consensus 45 ire~Lk~lL~~~gy~V-~tAsngeEALelLre~k~~PDLVIlDI~---MP~mDGlELLe~Ir~~-~-~IPVI---a~sd~ 115 (665)
....+.......+..+ ..+.+.+|+...++. . +|+|-+.-+ .... +++.++++... + ++|+| +-.+.
T Consensus 150 ~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~-G--ad~IGv~~r~l~~~~~-dl~~~~~l~~~v~~~~pvVaegGI~t~ 225 (272)
T 3qja_A 150 VLVSMLDRTESLGMTALVEVHTEQEADRALKA-G--AKVIGVNARDLMTLDV-DRDCFARIAPGLPSSVIRIAESGVRGT 225 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-T--CSEEEEESBCTTTCCB-CTTHHHHHGGGSCTTSEEEEESCCCSH
T ss_pred HHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC-C--CCEEEECCCccccccc-CHHHHHHHHHhCcccCEEEEECCCCCH
Confidence 3444445555567665 477888887666643 3 898887632 1122 35566666543 3 68888 34568
Q ss_pred HHHHHHHHcCCCeEEeC
Q 006006 116 SAVMRGIRHGACDYLIK 132 (665)
Q Consensus 116 e~a~kALe~GA~DYLlK 132 (665)
+.+.+..++||++++.=
T Consensus 226 edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 226 ADLLAYAGAGADAVLVG 242 (272)
T ss_dssp HHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 88999999999999873
No 163
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=59.08 E-value=56 Score=36.13 Aligned_cols=98 Identities=12% Similarity=0.192 Sum_probs=62.5
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhCC-CEE--EEECCHHHHHHHHHHcCCCceEEEEeCCCCC-----------CC
Q 006006 32 AGLRVLVVDD----DITCLRILEQMLRRCL-YNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD-----------MD 93 (665)
Q Consensus 32 ~girVLIVDD----D~~ire~Lk~lL~~~g-y~V--~tAsngeEALelLre~k~~PDLVIlDI~MP~-----------mD 93 (665)
.+..++++|. ...+.+.++++-+... ..+ ..+.+.++|..+++.. .|.|++.+.-.. .-
T Consensus 267 aGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aG---ad~i~vg~g~gsi~~~~~~~g~g~p 343 (511)
T 3usb_A 267 ASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAG---ANVVKVGIGPGSICTTRVVAGVGVP 343 (511)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSTTCCHHHHHCCCCC
T ss_pred hccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhC---CCEEEECCCCccccccccccCCCCC
Confidence 4567888873 3444555555555442 333 3678888888877653 798887442111 22
Q ss_pred HHHHHHHH---hccCCccEE---ecCchHHHHHHHHcCCCeEEeC
Q 006006 94 GFKLLEHI---GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 94 GlELLe~I---r~~~~IPVI---a~sd~e~a~kALe~GA~DYLlK 132 (665)
.++++..+ .....+||| .-.+...+.+|+.+||+..+.=
T Consensus 344 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 344 QLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred cHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 34554444 233469999 4567888999999999988763
No 164
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=58.68 E-value=70 Score=32.43 Aligned_cols=108 Identities=12% Similarity=0.090 Sum_probs=73.0
Q ss_pred CccEEEEEeCCH-HHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCcc
Q 006006 32 AGLRVLVVDDDI-TCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (665)
Q Consensus 32 ~girVLIVDDD~-~ire~Lk~lL~~~gy~V~tAs--ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IP 108 (665)
..++++|+.+.+ ...+.++++.+..+-.+.... +.++..+.+.. .|++|+-... +.-|+.+++.+. ..+|
T Consensus 284 ~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~----adv~v~ps~~-e~~~~~~~EAma--~G~P 356 (439)
T 3fro_A 284 QEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMC--LGAI 356 (439)
T ss_dssp GGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTT----CSEEEECBSC-CSSCHHHHHHHH--TTCE
T ss_pred CCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHHH----CCEEEeCCCC-CCccHHHHHHHH--CCCC
Confidence 357888887664 344677777777663333333 45566666542 6888875543 445677777764 4689
Q ss_pred EEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 109 VITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 109 VIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
||+.+. ....+.++.| .+++..|-+.++|.+++.+++.
T Consensus 357 vi~s~~-~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 357 PIASAV-GGLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp EEEESS-THHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred eEEcCC-CCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 995433 3444556667 9999999999999999999876
No 165
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=58.56 E-value=84 Score=27.66 Aligned_cols=113 Identities=14% Similarity=0.173 Sum_probs=63.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCc--eEEEEeCCCCCCCHHH-HHHHHhcc-CCccE
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCF--DVVLSDVHMPDMDGFK-LLEHIGLE-MDLPV 109 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~P--DLVIlDI~MP~mDGlE-LLe~Ir~~-~~IPV 109 (665)
+-|++..-|...++..+.++...||.|.++.+..+.-+.+++.-..+ -+|++-+ .+....| .++.++.. ..+-|
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvv--ddkewaekairfvkslgaqvli 80 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVV--DDKEWAEKAIRFVKSLGAQVLI 80 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEEC--SSHHHHHHHHHHHHHHCCCCEE
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEE--ccHHHHHHHHHHHHhcCCeEEE
Confidence 34455566777777889999999999999999998888777643233 3333322 2221111 12222322 23334
Q ss_pred EecCchHHH-----HHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 110 ITDGRVSAV-----MRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 110 Ia~sd~e~a-----~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
|.++..... ++.-+.|..- .---++++++..++++++..
T Consensus 81 iiydqdqnrleefsrevrrrgfev--rtvtspddfkkslerlirev 124 (134)
T 2l69_A 81 IIYDQDQNRLEEFSREVRRRGFEV--RTVTSPDDFKKSLERLIREV 124 (134)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCCE--EEESSHHHHHHHHHHHHHHH
T ss_pred EEEeCchhHHHHHHHHHHhcCceE--EEecChHHHHHHHHHHHHHh
Confidence 433322222 2223334321 11246788999999888764
No 166
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=58.36 E-value=33 Score=32.90 Aligned_cols=67 Identities=21% Similarity=0.198 Sum_probs=47.4
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCccEE--ecCchHHHHHHHHcCCCeEEe
Q 006006 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVI--TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 62 tAsngeEALelLre~k~~PDLVIlDI~MP~-------mDGlELLe~Ir~~~~IPVI--a~sd~e~a~kALe~GA~DYLl 131 (665)
.+.+.+++.+.... . .|.|+++-..+. --|++.++.++....+|++ +--+.+.+.++++.||+.+..
T Consensus 116 sv~t~~~~~~a~~~-g--aD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 116 SVHSLEEAVQAEKE-D--ADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGMTPDRLRDVKQAGADGIAV 191 (221)
T ss_dssp EECSHHHHHHHHHT-T--CSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSCCGGGHHHHHHTTCSEEEE
T ss_pred EcCCHHHHHHHHhC-C--CCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 67788888776643 3 899999764332 2367888888655578888 223778888999999998764
No 167
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=57.21 E-value=11 Score=36.87 Aligned_cols=59 Identities=15% Similarity=0.282 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 67 AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 67 eEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
+.+++.+++.+ ||+| .+ ||+.-- ++++++++...+|+| .-.+.+.+.+|+++||+..-+
T Consensus 117 ~~~~~~i~~~~--PD~i--Ei-LPGi~p-~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 117 NKGVALIQKVQ--PDCI--EL-LPGIIP-EQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHHHHC--CSEE--EE-ECTTCH-HHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHhhcC--CCEE--EE-CCchhH-HHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 46788888877 9977 33 687654 788999888899999 357889999999999987654
No 168
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=57.14 E-value=56 Score=34.25 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=72.0
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccE
Q 006006 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (665)
Q Consensus 33 girVLIVDDD~-~ire~Lk~lL~~~gy~V~-tAs-ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPV 109 (665)
.++++||.+.+ ..++.++++....+-.|. ... ..++..+.+.. .|++++=-. .+.-|+.+++.+. ..+||
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~~~~~lEAma--~G~Pv 392 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSR-FEPCGLTQLYALR--YGCIP 392 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECcc-cCCCCHHHHHHHH--CCCCE
Confidence 57888888764 356777777776543343 233 33333455543 588887544 2334566777764 36889
Q ss_pred EecCchHHHHHHHHcC---------CCeEEeCCCCHHHHHHHHHHHHH
Q 006006 110 ITDGRVSAVMRGIRHG---------ACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 110 Ia~sd~e~a~kALe~G---------A~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
|+.+. ....+.+..| ..+++..|-+.++|.++|.+++.
T Consensus 393 I~s~~-gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 439 (485)
T 1rzu_A 393 VVART-GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVR 439 (485)
T ss_dssp EEESS-HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHH
T ss_pred EEeCC-CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHH
Confidence 96443 3455667777 88999999999999999998873
No 169
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=55.91 E-value=36 Score=29.96 Aligned_cols=108 Identities=14% Similarity=0.200 Sum_probs=68.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCc-cE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTT-CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL-PV 109 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~t-AsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~I-PV 109 (665)
..++++|+.+.+. ...+++++...+..+.. .-+.++..+.+.. .|++|+-.. .+.-|+.+++.+. ..+ ||
T Consensus 31 ~~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--~G~vPv 102 (166)
T 3qhp_A 31 QDIVLLLKGKGPD-EKKIKLLAQKLGVKAEFGFVNSNELLEILKT----CTLYVHAAN-VESEAIACLEAIS--VGIVPV 102 (166)
T ss_dssp GGEEEEEECCSTT-HHHHHHHHHHHTCEEECCCCCHHHHHHHHTT----CSEEEECCC-SCCCCHHHHHHHH--TTCCEE
T ss_pred CCeEEEEEeCCcc-HHHHHHHHHHcCCeEEEeecCHHHHHHHHHh----CCEEEECCc-ccCccHHHHHHHh--cCCCcE
Confidence 3688999987654 46677777766655544 1124555555532 698887544 3444677888774 455 99
Q ss_pred EecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 110 ITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 110 Ia~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
|+..+.....+.+..+. ++..|-+.++|.+++.+++..
T Consensus 103 i~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~i~~l~~~ 140 (166)
T 3qhp_A 103 IANSPLSATRQFALDER--SLFEPNNAKDLSAKIDWWLEN 140 (166)
T ss_dssp EECCTTCGGGGGCSSGG--GEECTTCHHHHHHHHHHHHHC
T ss_pred EeeCCCCchhhhccCCc--eEEcCCCHHHHHHHHHHHHhC
Confidence 96433332323333333 388899999999999988763
No 170
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=55.46 E-value=87 Score=28.24 Aligned_cols=108 Identities=13% Similarity=0.141 Sum_probs=68.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHH--h--C--CCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 006006 33 GLRVLVVDDDITCLRILEQMLR--R--C--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~--~--~--gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~ 106 (665)
.++++|+.+.+.. ..+++++. . . ...+.-.-+.++..+.+.. .|++|+=.. .+.-|+.+++.+. ..
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama--~G 121 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMA--SG 121 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHH--TT
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHH--cC
Confidence 4678888764432 23334443 2 1 2333344455666676654 588886333 3334677777774 46
Q ss_pred ccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006006 107 LPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 150 (665)
Q Consensus 107 IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk~ 150 (665)
+|||+.+. ....+.++.|..+++. +-+.++|.++|.+++...
T Consensus 122 ~PvI~~~~-~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~~ 163 (177)
T 2f9f_A 122 KPVIAVNE-GGFKETVINEKTGYLV-NADVNEIIDAMKKVSKNP 163 (177)
T ss_dssp CCEEEESS-HHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHCT
T ss_pred CcEEEeCC-CCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhCH
Confidence 88996543 3455667778889999 999999999999987543
No 171
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=55.39 E-value=29 Score=30.53 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=25.7
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHH
Q 006006 37 LVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE 75 (665)
Q Consensus 37 LIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre 75 (665)
|+-|.|....+..+.-++..||+|..+.+.++|+..+++
T Consensus 81 llqdqdeneleefkrkiesqgyevrkvtddeealkivre 119 (134)
T 2lci_A 81 LLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVRE 119 (134)
T ss_dssp EEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHH
T ss_pred EeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHH
Confidence 444555555666666666667777777777777777664
No 172
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=55.24 E-value=35 Score=34.19 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=46.4
Q ss_pred CceEEEEeCCCC--CCC--------------------HHHHHHHHhccC-CccEEe--cCc-------hHHHHHHHHcCC
Q 006006 79 CFDVVLSDVHMP--DMD--------------------GFKLLEHIGLEM-DLPVIT--DGR-------VSAVMRGIRHGA 126 (665)
Q Consensus 79 ~PDLVIlDI~MP--~mD--------------------GlELLe~Ir~~~-~IPVIa--~sd-------~e~a~kALe~GA 126 (665)
..|+|.+++-.. ..| .+++++.+++.. ++|++. +.+ ...+.++.+.|+
T Consensus 44 G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~ 123 (262)
T 2ekc_A 44 GTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGI 123 (262)
T ss_dssp TCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCC
Confidence 389999987442 223 345677777665 889883 333 345667889999
Q ss_pred CeEEeCCCCHHHHHHHHHHH
Q 006006 127 CDYLIKPIREEELKNIWQHV 146 (665)
Q Consensus 127 ~DYLlKPv~~eEL~~aLq~V 146 (665)
++++.-.+..+++...+..+
T Consensus 124 dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 124 DGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp CEEECTTCCHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHH
Confidence 99999778887766555444
No 173
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=54.08 E-value=48 Score=34.77 Aligned_cols=108 Identities=10% Similarity=0.041 Sum_probs=69.1
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccE
Q 006006 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (665)
Q Consensus 33 girVLIVDDD~-~ire~Lk~lL~~~gy~V~-tAs-ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPV 109 (665)
.++++||.+.+ ..++.++++....+-.|. ... ..++..+.+.. .|++++=-. .+.-|+.+++.+. ..+||
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~g~~~lEAma--~G~Pv 393 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSR-FEPCGLTQLYGLK--YGTLP 393 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCc-cCCCcHHHHHHHH--CCCCE
Confidence 56777776653 456667777766543342 222 33333355543 477776543 2344566777664 36889
Q ss_pred EecCchHHHHHHHHcC---------CCeEEeCCCCHHHHHHHHHHHHH
Q 006006 110 ITDGRVSAVMRGIRHG---------ACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 110 Ia~sd~e~a~kALe~G---------A~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
|+.+. ....+.+..| ..+++..|-+.++|.++|.+++.
T Consensus 394 I~s~~-gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 440 (485)
T 2qzs_A 394 LVRRT-GGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFV 440 (485)
T ss_dssp EEESS-HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHH
T ss_pred EECCC-CCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHH
Confidence 86543 4455667777 89999999999999999998873
No 174
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=53.69 E-value=40 Score=33.86 Aligned_cols=85 Identities=19% Similarity=0.191 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHHcCCCceEEEEeCC-CC---CCCHHHHHHHHhccCCccEE---ecCc
Q 006006 44 TCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVH-MP---DMDGFKLLEHIGLEMDLPVI---TDGR 114 (665)
Q Consensus 44 ~ire~Lk~lL~~~gy~V~--tAsngeEALelLre~k~~PDLVIlDI~-MP---~mDGlELLe~Ir~~~~IPVI---a~sd 114 (665)
...+..++++.. ++.+. .+.+.+++....+. . .|.|+.=-. .. +..+.++++++++..++||| .-.+
T Consensus 114 ~~~~~a~~~~~~-g~~vi~~~~~~~~~a~~~~~~-g--ad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t 189 (264)
T 1xm3_A 114 ETLKASEQLLEE-GFIVLPYTSDDVVLARKLEEL-G--VHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGS 189 (264)
T ss_dssp HHHHHHHHHHHT-TCCEEEEECSCHHHHHHHHHH-T--CSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCS
T ss_pred HHHHHHHHHHCC-CeEEEEEcCCCHHHHHHHHHh-C--CCEEEECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCC
Confidence 455555555443 54444 55666666555443 3 677633000 01 12347888888777788988 3456
Q ss_pred hHHHHHHHHcCCCeEEeC
Q 006006 115 VSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 115 ~e~a~kALe~GA~DYLlK 132 (665)
.+.+.++++.||+..+.=
T Consensus 190 ~eda~~~~~~GAdgViVG 207 (264)
T 1xm3_A 190 PKDAAYAMELGADGVLLN 207 (264)
T ss_dssp HHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 888999999999998764
No 175
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=53.66 E-value=2.4 Score=45.07 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=27.5
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHHcCCCceEEEEeC
Q 006006 34 LRVLVVDDD--ITCLRILEQMLRRCLYNVTTC--SQAAVALDILRERKGCFDVVLSDV 87 (665)
Q Consensus 34 irVLIVDDD--~~ire~Lk~lL~~~gy~V~tA--sngeEALelLre~k~~PDLVIlDI 87 (665)
++|....+. ..+.+.+..+-+..++.|... .+..+.+.........|||++++.
T Consensus 7 ltvw~~~~~~~~~~~~~~~~F~~~~gi~V~~~~~~~~~~kl~~~~~sg~~pDv~~~~~ 64 (449)
T 3iot_A 7 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH 64 (449)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCCEEEECCTTHHHHHHHHGGGTCSCSEEEEET
T ss_pred EEEEeCCCCchHHHHHHHHHHhhccCCEEEEEecHHHHHHHHHHhhCCCCCCEEEeCc
Confidence 455433332 334444444444446655433 444555554444344599999864
No 176
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=53.41 E-value=39 Score=32.92 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=35.5
Q ss_pred HHHHHHHhccCCccEE--ecCc-------hHHHHHHHHcCCCeEEeCCCCHHHHHHHHH
Q 006006 95 FKLLEHIGLEMDLPVI--TDGR-------VSAVMRGIRHGACDYLIKPIREEELKNIWQ 144 (665)
Q Consensus 95 lELLe~Ir~~~~IPVI--a~sd-------~e~a~kALe~GA~DYLlKPv~~eEL~~aLq 144 (665)
+++++++++..++||+ .+.+ .+.+..+++.||+..+.=....++....++
T Consensus 69 ~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~ 127 (248)
T 1geq_A 69 FWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTE 127 (248)
T ss_dssp HHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHH
T ss_pred HHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHH
Confidence 7788888876678877 3323 467888999999999986666665544433
No 177
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=53.02 E-value=76 Score=30.76 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCCCCC-CH--HHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe------CC
Q 006006 67 AVALDILRERKGCFD-VVLSDVHMPDM-DG--FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI------KP 133 (665)
Q Consensus 67 eEALelLre~k~~PD-LVIlDI~MP~m-DG--lELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl------KP 133 (665)
.+.++.+.+.. ++ ++++++.-.++ .| +++++++++...+||| .-.+.+.+.++++.||++.+. .|
T Consensus 155 ~e~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 155 VEWAVKGVELG--AGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHHHT--CCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHHcC--CCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 44445555443 66 55566543221 23 8899999877789999 345567888888899998875 35
Q ss_pred CCHHHHHHHH
Q 006006 134 IREEELKNIW 143 (665)
Q Consensus 134 v~~eEL~~aL 143 (665)
++..++++.+
T Consensus 233 ~~~~~~~~~l 242 (252)
T 1ka9_F 233 IPIPKLKRYL 242 (252)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6777766544
No 178
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=51.77 E-value=98 Score=29.95 Aligned_cols=76 Identities=18% Similarity=0.262 Sum_probs=48.8
Q ss_pred HHHHHHHHHHcCCCce-EEEEeCCCCC-CCH--HHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEeC------
Q 006006 66 AAVALDILRERKGCFD-VVLSDVHMPD-MDG--FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIK------ 132 (665)
Q Consensus 66 geEALelLre~k~~PD-LVIlDI~MP~-mDG--lELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlK------ 132 (665)
..+.++.+.+.. ++ ++++++.-.+ ..| +++++++++...+||| .-.+.+.+.++++.||+..+.=
T Consensus 153 ~~e~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~ 230 (253)
T 1thf_D 153 LRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 230 (253)
T ss_dssp HHHHHHHHHHTT--CSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHHCC--CCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcC
Confidence 455555555543 67 5556664322 122 7899999877789999 3455678888889999987653
Q ss_pred CCCHHHHHHHH
Q 006006 133 PIREEELKNIW 143 (665)
Q Consensus 133 Pv~~eEL~~aL 143 (665)
|++.+++.+.+
T Consensus 231 ~~~~~~~~~~l 241 (253)
T 1thf_D 231 EIDVRELKEYL 241 (253)
T ss_dssp CSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 44555554443
No 179
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=51.69 E-value=1.6e+02 Score=31.19 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=57.6
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCCC------------
Q 006006 32 AGLRVLVVDD----DITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDM------------ 92 (665)
Q Consensus 32 ~girVLIVDD----D~~ire~Lk~lL~~~-gy~V~--tAsngeEALelLre~k~~PDLVIlDI~MP~m------------ 92 (665)
++..++.+|- .....+.++.+-+.. +..|. .+.+.++|..+++.. .|.|.+.+. |+.
T Consensus 111 aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aG---aD~I~Vg~g-~G~~~~tr~~~g~g~ 186 (361)
T 3r2g_A 111 AGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCG---ADIIKAGIG-GGSVCSTRIKTGFGV 186 (361)
T ss_dssp TTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTT---CSEEEECCS-SSSCHHHHHHHCCCC
T ss_pred cCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcC---CCEEEEcCC-CCcCccccccCCccH
Confidence 3566777762 233334444333322 34443 488999998877643 899998543 321
Q ss_pred CHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 93 DGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 93 DGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
..++.+.++..... ||| .-.+...+.+|+.+||+....
T Consensus 187 p~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 187 PMLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp CHHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 23444555433222 888 345678899999999988765
No 180
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=51.54 E-value=95 Score=32.60 Aligned_cols=98 Identities=9% Similarity=0.117 Sum_probs=60.8
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCEE--EEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------CC
Q 006006 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------MD 93 (665)
Q Consensus 33 girVLIVD----DD~~ire~Lk~lL~~~-gy~V--~tAsngeEALelLre~k~~PDLVIlDI~MP~------------mD 93 (665)
+..++.++ +.....+.++.+-+.. +..| ..+.+.++|..+++.. .|.|++-.. ++ ..
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aG---aD~I~v~~g-~G~~~~~r~~~g~~~p 207 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSG---ADIIKVGIG-PGSVCTTRKKTGVGYP 207 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTT---CSEEEECSS-CSTTBCHHHHHCBCCC
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhC---CCEEEECCC-CCcCcCccccCCCCcc
Confidence 45566665 3344556666655554 4433 4688899998877643 898877532 21 12
Q ss_pred HHHHHHHHh---ccCCccEE---ecCchHHHHHHHHcCCCeE-EeCCC
Q 006006 94 GFKLLEHIG---LEMDLPVI---TDGRVSAVMRGIRHGACDY-LIKPI 134 (665)
Q Consensus 94 GlELLe~Ir---~~~~IPVI---a~sd~e~a~kALe~GA~DY-LlKPv 134 (665)
-++++..+. ....+||| .-.+...+.+|+.+||+.. +-+++
T Consensus 208 ~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 208 QLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 233444442 22469999 4567888999999999876 44554
No 181
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=50.74 E-value=70 Score=31.95 Aligned_cols=82 Identities=10% Similarity=0.008 Sum_probs=55.2
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhcc--CCccEE--ecCchHHHHHHHHcCCCeEE
Q 006006 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLE--MDLPVI--TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 62 tAsngeEALelLre~k~~PDLVIlDI~MP~-------mDGlELLe~Ir~~--~~IPVI--a~sd~e~a~kALe~GA~DYL 130 (665)
+|.+.+|+.+..+. .+|.|.+.-..|. .-|++.+++++.. ..+||| +--+.+.+.++++.||+++.
T Consensus 141 S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI~~~ni~~~~~aGa~gva 217 (243)
T 3o63_A 141 STHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGINAQRLPAVLDAGARRIV 217 (243)
T ss_dssp EECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSCCTTTHHHHHHTTCCCEE
T ss_pred eCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCCCHHHHHHHHHcCCCEEE
Confidence 68899998776653 3899998654432 2378888888754 478988 22366778889999999987
Q ss_pred e-----CCCCHHHHHHHHHHH
Q 006006 131 I-----KPIREEELKNIWQHV 146 (665)
Q Consensus 131 l-----KPv~~eEL~~aLq~V 146 (665)
. +.-++.+..+.+...
T Consensus 218 v~sai~~a~dp~~a~~~l~~~ 238 (243)
T 3o63_A 218 VVRAITSADDPRAAAEQLRSA 238 (243)
T ss_dssp ESHHHHTCSSHHHHHHHHHHH
T ss_pred EeHHHhCCCCHHHHHHHHHHH
Confidence 5 444555544444433
No 182
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=50.03 E-value=89 Score=31.98 Aligned_cols=109 Identities=13% Similarity=0.162 Sum_probs=66.6
Q ss_pred ccEEEEEeCC---HHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 006006 33 GLRVLVVDDD---ITCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (665)
Q Consensus 33 girVLIVDDD---~~ire~Lk~lL~~~gy--~V~tAs--ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~ 105 (665)
.++++|+.+. ....+.++++++..+. .|.... +.++..+.+.. .|++|+-.. .+.-|+.+++.+. .
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--~ 348 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSF-NESFGLVAMEAQA--S 348 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH--T
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECcc-ccCCchHHHHHHH--c
Confidence 4677777661 1234555666655432 243333 33566666653 477776442 2333667777764 4
Q ss_pred CccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 106 DLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 106 ~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
.+|||+.+. ....+.+..|..+++..|-+.++|.++|..++..
T Consensus 349 G~PvI~~~~-~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~ 391 (438)
T 3c48_A 349 GTPVIAARV-GGLPIAVAEGETGLLVDGHSPHAWADALATLLDD 391 (438)
T ss_dssp TCCEEEESC-TTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHHC
T ss_pred CCCEEecCC-CChhHHhhCCCcEEECCCCCHHHHHHHHHHHHcC
Confidence 678885432 2344566778889999999999999999988753
No 183
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=49.84 E-value=1.3e+02 Score=30.82 Aligned_cols=75 Identities=23% Similarity=0.231 Sum_probs=51.7
Q ss_pred HhCCCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC----C---CCHHHHHHHHhccCCccEE---ecCchHHHHHHH
Q 006006 54 RRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP----D---MDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGI 122 (665)
Q Consensus 54 ~~~gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP----~---mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kAL 122 (665)
+..+..+. .+.+.+++....+. .+|.|+++-.-+ + ...+++++++++..++||| .-.+.+.+.+++
T Consensus 115 ~~~gi~vi~~v~t~~~a~~~~~~---GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al 191 (328)
T 2gjl_A 115 RRHGVKVIHKCTAVRHALKAERL---GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAAL 191 (328)
T ss_dssp HHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHH
T ss_pred HHcCCCEEeeCCCHHHHHHHHHc---CCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH
Confidence 33344443 57788888776553 289988863222 1 2567889998877789999 344677888999
Q ss_pred HcCCCeEEe
Q 006006 123 RHGACDYLI 131 (665)
Q Consensus 123 e~GA~DYLl 131 (665)
..||+....
T Consensus 192 ~~GAdgV~v 200 (328)
T 2gjl_A 192 ALGADAINM 200 (328)
T ss_dssp HHTCSEEEE
T ss_pred HcCCCEEEE
Confidence 999988765
No 184
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=48.62 E-value=47 Score=33.42 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=29.8
Q ss_pred CCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 105 MDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 105 ~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
..+|+|+........+.++.| .+++..| +.++|.+++.+++..
T Consensus 300 ~G~PvI~~~~~~~~~e~v~~g-~g~lv~~-d~~~la~~i~~ll~d 342 (384)
T 1vgv_A 300 LGKPVLVMRDTTERPEAVTAG-TVRLVGT-DKQRIVEEVTRLLKD 342 (384)
T ss_dssp GTCCEEEESSCCSCHHHHHHT-SEEEECS-SHHHHHHHHHHHHHC
T ss_pred cCCCEEEccCCCCcchhhhCC-ceEEeCC-CHHHHHHHHHHHHhC
Confidence 468888332211123345678 8999988 999999999988753
No 185
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=48.54 E-value=64 Score=28.43 Aligned_cols=93 Identities=9% Similarity=0.068 Sum_probs=52.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCccE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAs-ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IPV 109 (665)
.+++|+++|.++...+.++. .++.+.... .-.+.++.+.-.. .|+||+-+.-. ..-..++..++. .+.+.+
T Consensus 29 ~g~~v~vid~~~~~~~~~~~----~g~~~i~gd~~~~~~l~~a~i~~--ad~vi~~~~~~-~~n~~~~~~a~~~~~~~~i 101 (140)
T 3fwz_A 29 SDIPLVVIETSRTRVDELRE----RGVRAVLGNAANEEIMQLAHLEC--AKWLILTIPNG-YEAGEIVASARAKNPDIEI 101 (140)
T ss_dssp TTCCEEEEESCHHHHHHHHH----TTCEEEESCTTSHHHHHHTTGGG--CSEEEECCSCH-HHHHHHHHHHHHHCSSSEE
T ss_pred CCCCEEEEECCHHHHHHHHH----cCCCEEECCCCCHHHHHhcCccc--CCEEEEECCCh-HHHHHHHHHHHHHCCCCeE
Confidence 46789999998876655443 466554322 1233444332223 78888754321 122334444543 356777
Q ss_pred E-ecCchHHHHHHHHcCCCeEEe
Q 006006 110 I-TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 110 I-a~sd~e~a~kALe~GA~DYLl 131 (665)
| -..+.++.....+.||+..+.
T Consensus 102 iar~~~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 102 IARAHYDDEVAYITERGANQVVM 124 (140)
T ss_dssp EEEESSHHHHHHHHHTTCSEEEE
T ss_pred EEEECCHHHHHHHHHCCCCEEEC
Confidence 7 345566666677889886664
No 186
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=47.77 E-value=1e+02 Score=33.84 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=61.8
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCEE--EEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------CC
Q 006006 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------MD 93 (665)
Q Consensus 33 girVLIVD----DD~~ire~Lk~lL~~~-gy~V--~tAsngeEALelLre~k~~PDLVIlDI~MP~------------mD 93 (665)
+..++++| +.....+.++.+-+.. +..| ..+.+.++|..+++.. .|.|.+-+. |+ .-
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aG---aD~I~vg~g-~Gs~~~t~~~~g~g~p 316 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAG---ADAVKVGIG-PGSICTTRIVAGVGVP 316 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTT---CSEEEECSS-CSTTCHHHHHTCBCCC
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcC---CCEEEECCC-CCcCCCccccCCCCcc
Confidence 45677776 4455556666666654 3333 3478888888877643 899987321 21 12
Q ss_pred HHHHHHHHhc---cCCccEE---ecCchHHHHHHHHcCCCeEEeC
Q 006006 94 GFKLLEHIGL---EMDLPVI---TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 94 GlELLe~Ir~---~~~IPVI---a~sd~e~a~kALe~GA~DYLlK 132 (665)
.++++..+.+ ...+||| .-.+...+.+|+.+||+....=
T Consensus 317 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vG 361 (490)
T 4avf_A 317 QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMG 361 (490)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeec
Confidence 3455555532 3479999 3457788999999999887653
No 187
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=47.25 E-value=50 Score=33.09 Aligned_cols=68 Identities=22% Similarity=0.207 Sum_probs=47.7
Q ss_pred CceEEEEeCCC--CCCCH--------------------HHHHHHHhcc-CCccEE--ecCc-------hHHHHHHHHcCC
Q 006006 79 CFDVVLSDVHM--PDMDG--------------------FKLLEHIGLE-MDLPVI--TDGR-------VSAVMRGIRHGA 126 (665)
Q Consensus 79 ~PDLVIlDI~M--P~mDG--------------------lELLe~Ir~~-~~IPVI--a~sd-------~e~a~kALe~GA 126 (665)
..|+|-+|+-. |.+|| +++++.+|+. .++|++ .+.+ ..++.++.+.||
T Consensus 44 GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGa 123 (268)
T 1qop_A 44 GADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGV 123 (268)
T ss_dssp TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTC
T ss_pred CCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCC
Confidence 38999999833 33443 4667777776 688987 3333 356778899999
Q ss_pred CeEEeCCCCHHHHHHHHHHH
Q 006006 127 CDYLIKPIREEELKNIWQHV 146 (665)
Q Consensus 127 ~DYLlKPv~~eEL~~aLq~V 146 (665)
++++.-....+++...++.+
T Consensus 124 dgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 124 DSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp CEEEETTCCGGGCHHHHHHH
T ss_pred CEEEEcCCCHHHHHHHHHHH
Confidence 99999777777766555544
No 188
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=46.66 E-value=53 Score=32.97 Aligned_cols=86 Identities=13% Similarity=0.192 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhCCCEEEE-----ECCHHHHHHHHHHcCCCceEEEE---------eCCCC---------CCCH-----
Q 006006 43 ITCLRILEQMLRRCLYNVTT-----CSQAAVALDILRERKGCFDVVLS---------DVHMP---------DMDG----- 94 (665)
Q Consensus 43 ~~ire~Lk~lL~~~gy~V~t-----AsngeEALelLre~k~~PDLVIl---------DI~MP---------~mDG----- 94 (665)
....+.++.+-+..+..|.. +.+..+..+.+.+.. .|.|++ |.+-. +..|
T Consensus 150 ~~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G--~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~ 227 (311)
T 1ep3_A 150 EVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAG--ADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKP 227 (311)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTT--CSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcC--CCEEEEeCCCcccccCcccCCccccCCCCcccCccchH
Confidence 34455555554443444431 234466566666654 898887 43211 1112
Q ss_pred --HHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEE
Q 006006 95 --FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 95 --lELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYL 130 (665)
+++++++++..++||| ...+.+.+.++++.||+...
T Consensus 228 ~~~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~ 268 (311)
T 1ep3_A 228 VALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVA 268 (311)
T ss_dssp HHHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 5788888777789999 34577888999999987753
No 189
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=46.09 E-value=99 Score=32.59 Aligned_cols=112 Identities=12% Similarity=0.067 Sum_probs=73.1
Q ss_pred ccEEEEEeC--CH------------HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCH
Q 006006 33 GLRVLVVDD--DI------------TCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDG 94 (665)
Q Consensus 33 girVLIVDD--D~------------~ire~Lk~lL~~~gy--~V~tAs--ngeEALelLre~k~~PDLVIlDI~MP~mDG 94 (665)
..+++|+.+ .+ ...+.++++++..+. .|.... +.++..+.+.......|++++=-. .+.-|
T Consensus 294 ~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~-~Eg~~ 372 (499)
T 2r60_A 294 ANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSF-YEPFG 372 (499)
T ss_dssp CEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCS-CBCCC
T ss_pred ceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcc-cCCCC
Confidence 357888887 22 126777777776543 244333 356777777642100288887443 23345
Q ss_pred HHHHHHHhccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 95 FKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 95 lELLe~Ir~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
+.+++.+. ..+|||+.+ .....+.+..|..+++..|-+.++|.++|.+++.
T Consensus 373 ~~~lEAma--~G~PvI~s~-~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 373 LAPVEAMA--SGLPAVVTR-NGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp SHHHHHHH--TTCCEEEES-SBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred cHHHHHHH--cCCCEEEec-CCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 67777764 468999544 3345567778889999999999999999988864
No 190
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=45.98 E-value=37 Score=31.26 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=32.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCEEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~--gy~V~tAsngeEALelLre~k~~PDLVIlDI 87 (665)
.+.||++||-|+.. .+..++... ++.+..+.. ....+.++.....+|+||+|.
T Consensus 29 ~g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~ 83 (206)
T 4dzz_A 29 SGYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDG 83 (206)
T ss_dssp TTCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEEC
T ss_pred CCCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEEC
Confidence 46899999988542 333444332 455655544 444444444444599999997
No 191
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=45.74 E-value=72 Score=29.84 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=48.9
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHHcC-CCceEEEEeCCCCCCCHHHHHHHH
Q 006006 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRERK-GCFDVVLSDVHMPDMDGFKLLEHI 101 (665)
Q Consensus 29 ~fP~girVLIVDDD~~ire~Lk~lL~~~gy--~V-~tAsngeEALelLre~k-~~PDLVIlDI~MP~mDGlELLe~I 101 (665)
.+|.+.+|..||-++...+..++.+...+. .+ ....++.+.+..+.... ..+|+|++|...+ +-.++++.+
T Consensus 79 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~ 153 (223)
T 3duw_A 79 GLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWA 153 (223)
T ss_dssp TCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHH
Confidence 456567999999999999999998887654 24 35678877776554421 3499999996532 223445554
No 192
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=45.51 E-value=44 Score=34.00 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=51.1
Q ss_pred HHHHHHHHcCCCceEEEEeCCC--CCCCH--------------------HHHHHHHhcc-CCccEE--ecCc-------h
Q 006006 68 VALDILRERKGCFDVVLSDVHM--PDMDG--------------------FKLLEHIGLE-MDLPVI--TDGR-------V 115 (665)
Q Consensus 68 EALelLre~k~~PDLVIlDI~M--P~mDG--------------------lELLe~Ir~~-~~IPVI--a~sd-------~ 115 (665)
+.++.+.+. ..|+|=+++-. |-+|| +++++++|+. .++|++ .|.+ .
T Consensus 36 ~~~~~l~~~--GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e 113 (267)
T 3vnd_A 36 KIIQTLVDN--GADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGID 113 (267)
T ss_dssp HHHHHHHHT--TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHH
T ss_pred HHHHHHHHc--CCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHH
Confidence 334444443 38988888533 33443 5677777765 788987 4432 4
Q ss_pred HHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006006 116 SAVMRGIRHGACDYLIKPIREEELKNIWQHV 146 (665)
Q Consensus 116 e~a~kALe~GA~DYLlKPv~~eEL~~aLq~V 146 (665)
.++.++.+.|+++.|.-....+|....++.+
T Consensus 114 ~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~ 144 (267)
T 3vnd_A 114 EFYTKAQAAGVDSVLIADVPVEESAPFSKAA 144 (267)
T ss_dssp HHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCCCHhhHHHHHHHH
Confidence 4678899999999999777778765544443
No 193
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=45.35 E-value=1.3e+02 Score=32.99 Aligned_cols=99 Identities=15% Similarity=0.269 Sum_probs=61.6
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHHcCCCceEEEEeCC--------------CCC
Q 006006 33 GLRVLVV----DDDITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVH--------------MPD 91 (665)
Q Consensus 33 girVLIV----DDD~~ire~Lk~lL~~~-gy~V~--tAsngeEALelLre~k~~PDLVIlDI~--------------MP~ 91 (665)
+..++.+ .+.....+.++.+-+.. +..|. .+.+.++|..+.+.. .|.|.+-.. +|.
T Consensus 267 G~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aG---ad~I~vg~~~G~~~~t~~~~~~g~~~ 343 (514)
T 1jcn_A 267 GVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAG---VDGLRVGMGCGSICITQEVMACGRPQ 343 (514)
T ss_dssp TCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSCCBTTBCCCSCCCCH
T ss_pred CCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcC---CCEEEECCCCCcccccccccCCCccc
Confidence 3455555 12334445555555554 44443 578888887776643 788877432 111
Q ss_pred CCHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe-CCC
Q 006006 92 MDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI-KPI 134 (665)
Q Consensus 92 mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl-KPv 134 (665)
...+.++.+++....+||| .-.+...+.+|+.+||+.... .++
T Consensus 344 ~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~GAd~V~iG~~~ 390 (514)
T 1jcn_A 344 GTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMGSLL 390 (514)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred hhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCeeeECHHH
Confidence 2346677777666689999 345678899999999987643 443
No 194
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=45.16 E-value=40 Score=33.54 Aligned_cols=107 Identities=23% Similarity=0.342 Sum_probs=63.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~g--y~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI 110 (665)
.++++|+.+.+ .+.++++++..+ -.|......++..+.+.. .|++|+-... +.-|..+++.+. ..+|||
T Consensus 228 ~~~l~i~G~g~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~~-e~~~~~~~Ea~a--~G~Pvi 298 (374)
T 2iw1_A 228 NTLLFVVGQDK--PRKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAYQ-EAAGIVLLEAIT--AGLPVL 298 (374)
T ss_dssp TEEEEEESSSC--CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCSC-CSSCHHHHHHHH--HTCCEE
T ss_pred ceEEEEEcCCC--HHHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEecccc-CCcccHHHHHHH--CCCCEE
Confidence 35677776643 234455554433 234444443444444443 4777764432 334667777764 357888
Q ss_pred ecCchHHHHHHHHcCCCeEEeC-CCCHHHHHHHHHHHHHH
Q 006006 111 TDGRVSAVMRGIRHGACDYLIK-PIREEELKNIWQHVVRK 149 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlK-Pv~~eEL~~aLq~Vlrk 149 (665)
+.+.. ...+.+..|..+++.. |.+.++|.+++.+++..
T Consensus 299 ~~~~~-~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~ 337 (374)
T 2iw1_A 299 TTAVC-GYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQ 337 (374)
T ss_dssp EETTS-TTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHHC
T ss_pred EecCC-CchhhhccCCceEEeCCCCCHHHHHHHHHHHHcC
Confidence 43321 1234456677899997 89999999999988753
No 195
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=44.38 E-value=16 Score=38.53 Aligned_cols=27 Identities=19% Similarity=0.382 Sum_probs=24.2
Q ss_pred ChhHHHHHHhcCC-------CCCcceeeeeccCC
Q 006006 1 MAALQRIVQSSGG-------SGYGSSRAADVAVP 27 (665)
Q Consensus 1 Lai~~~~V~~mgG-------sg~Gs~f~~~~~~~ 27 (665)
|++||++|+.||| .|.|++|++.+|..
T Consensus 215 L~iv~~~v~~~gG~i~v~s~~g~Gt~f~i~lPl~ 248 (379)
T 1b3q_A 215 MDVVKNVVESLNGSMGIESEKDKGTKVTIRLPLT 248 (379)
T ss_dssp SHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESS
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCCeEEEeccCCc
Confidence 7899999999999 38999999998874
No 196
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=43.93 E-value=5.5 Score=40.58 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=34.7
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCCEEEEECCHHH--HHHHHHHcCCCceEEEEe
Q 006006 34 LRVLVVDDD--ITCLRILEQMLRRCLYNVTTCSQAAV--ALDILRERKGCFDVVLSD 86 (665)
Q Consensus 34 irVLIVDDD--~~ire~Lk~lL~~~gy~V~tAsngeE--ALelLre~k~~PDLVIlD 86 (665)
.|||||+++ +.....|.+.|+..++.|......+- -.+.+. . +|+||++
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~--~--yDvIIl~ 57 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA--K--QDLVILS 57 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH--T--CSEEEEE
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh--c--CCEEEEc
Confidence 589999998 66788899999988998876553321 112232 3 8999887
No 197
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=43.52 E-value=1.5e+02 Score=29.67 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=61.1
Q ss_pred HHHHHHhCCCEE--EEEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCccEE--ecCchHHHHH
Q 006006 49 LEQMLRRCLYNV--TTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPVI--TDGRVSAVMR 120 (665)
Q Consensus 49 Lk~lL~~~gy~V--~tAs-ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~---~~~IPVI--a~sd~e~a~k 120 (665)
+++.|......+ .... +..+.++.+.... +|.||+|++=...+.-++...++. ....++| ...+...+.+
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~~g--~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~ 83 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAEAG--LDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQR 83 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHHTT--CSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhcCC--cCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 455665533333 3333 4456677776655 999999998766666555555532 2334455 4456677888
Q ss_pred HHHcCCCeEEe-CCCCHHHHHHHHHHH
Q 006006 121 GIRHGACDYLI-KPIREEELKNIWQHV 146 (665)
Q Consensus 121 ALe~GA~DYLl-KPv~~eEL~~aLq~V 146 (665)
++..|++..++ |--+.+++..+.+.+
T Consensus 84 ~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 84 LLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 99999988654 445788887766654
No 198
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=43.44 E-value=89 Score=33.11 Aligned_cols=86 Identities=12% Similarity=0.165 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHHcCCCceEEEEeCCC---------C--CCCHHHHHHHHh---ccC
Q 006006 43 ITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM---------P--DMDGFKLLEHIG---LEM 105 (665)
Q Consensus 43 ~~ire~Lk~lL~~~-gy~V~--tAsngeEALelLre~k~~PDLVIlDI~M---------P--~mDGlELLe~Ir---~~~ 105 (665)
....+.++.+-+.. +..|. .+.+.++|..+.+ . .+|.|++-..- . +.-.++.+..+. ...
T Consensus 179 ~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~-~--Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~ 255 (404)
T 1eep_A 179 TRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS-V--GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNT 255 (404)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT-T--TCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh-c--CCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhc
Confidence 34555555544444 44444 5777777766553 3 38988882110 0 112345555553 345
Q ss_pred CccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 106 DLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 106 ~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
.+||| .-.+.+.+.+++.+||+....
T Consensus 256 ~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 256 NICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp SCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 79999 345678899999999988765
No 199
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=43.43 E-value=1.1e+02 Score=31.50 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=52.2
Q ss_pred HhCCCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC-C----CCHHHHHHHHhccCCccEE---ecCchHHHHHHHHc
Q 006006 54 RRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-D----MDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRH 124 (665)
Q Consensus 54 ~~~gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP-~----mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~ 124 (665)
+..+..|. .+.+.++|..+.+. . +|.|+++-.-. + ...++++.++++..++||| .-.+.+.+.+++..
T Consensus 121 ~~~g~~v~~~v~s~~~a~~a~~~-G--aD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~~ 197 (326)
T 3bo9_A 121 KENGTKVIPVVASDSLARMVERA-G--ADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFAL 197 (326)
T ss_dssp HHTTCEEEEEESSHHHHHHHHHT-T--CSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHH
T ss_pred HHcCCcEEEEcCCHHHHHHHHHc-C--CCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHh
Confidence 33354443 57788888766543 3 89888864222 1 3568888888766689999 34567888899999
Q ss_pred CCCeEEe
Q 006006 125 GACDYLI 131 (665)
Q Consensus 125 GA~DYLl 131 (665)
||+....
T Consensus 198 GA~gV~v 204 (326)
T 3bo9_A 198 GAEAVQM 204 (326)
T ss_dssp TCSEEEE
T ss_pred CCCEEEe
Confidence 9998765
No 200
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=42.28 E-value=1.5e+02 Score=30.87 Aligned_cols=72 Identities=17% Similarity=0.115 Sum_probs=49.9
Q ss_pred CCEE-EEECCHHHHHHHHHHcCCCceEEEEeCCC---------CC-------CCHHHHHHHHhccCCccEE---ecCchH
Q 006006 57 LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHM---------PD-------MDGFKLLEHIGLEMDLPVI---TDGRVS 116 (665)
Q Consensus 57 gy~V-~tAsngeEALelLre~k~~PDLVIlDI~M---------P~-------mDGlELLe~Ir~~~~IPVI---a~sd~e 116 (665)
+..| ..+.+.+++....+ .. +|.|+++-.- +. ...++++++++...++||| .-.+.+
T Consensus 145 g~~v~~~v~t~~~a~~a~~-~G--aD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~ 221 (369)
T 3bw2_A 145 GTLTLVTATTPEEARAVEA-AG--ADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGG 221 (369)
T ss_dssp TCEEEEEESSHHHHHHHHH-TT--CSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHH
T ss_pred CCeEEEECCCHHHHHHHHH-cC--CCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCHH
Confidence 4444 36778888766554 33 8999986421 10 2348899998776789999 234778
Q ss_pred HHHHHHHcCCCeEEe
Q 006006 117 AVMRGIRHGACDYLI 131 (665)
Q Consensus 117 ~a~kALe~GA~DYLl 131 (665)
.+.+++..||+....
T Consensus 222 ~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 222 QIAAVLAAGADAAQL 236 (369)
T ss_dssp HHHHHHHTTCSEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 899999999987654
No 201
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=42.03 E-value=77 Score=33.50 Aligned_cols=79 Identities=5% Similarity=0.011 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eEL~ 140 (665)
+.++|+++++... .+++..++--++..| ++.+++|++...+||++ ..+...+.++++.|+.|++ .|+....-|.
T Consensus 230 ~~~~ai~~~~~l~-~~~i~~iE~P~~~~~-~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 307 (410)
T 2gl5_A 230 GTNSAIQFAKAIE-KYRIFLYEEPIHPLN-SDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGGIT 307 (410)
T ss_dssp CHHHHHHHHHHHG-GGCEEEEECSSCSSC-HHHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHHH-hcCCCeEECCCChhh-HHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 5688888887653 367877776555433 67777787767899983 3356778889999977765 7887765665
Q ss_pred HHHHH
Q 006006 141 NIWQH 145 (665)
Q Consensus 141 ~aLq~ 145 (665)
++++-
T Consensus 308 ~~~~i 312 (410)
T 2gl5_A 308 EGKKI 312 (410)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 202
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=41.95 E-value=6.7 Score=34.92 Aligned_cols=21 Identities=0% Similarity=-0.113 Sum_probs=19.2
Q ss_pred hhHHHHhHHHHHHHHHhcccc
Q 006006 221 VWSVELHQQFVSAVNQLGIDK 241 (665)
Q Consensus 221 vfK~Elg~tFvdyLn~lRIeK 241 (665)
.||+++|++|.+|++++||++
T Consensus 113 ~Fk~~~G~tp~~y~~~~Rl~~ 133 (133)
T 1u8b_A 113 LFKATTGMTPKAWQQAWRARR 133 (133)
T ss_dssp HHHHHTSSCHHHHHHHHHHC-
T ss_pred HHHHHHCcCHHHHHHHHHhcC
Confidence 799999999999999999975
No 203
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=41.92 E-value=1.3e+02 Score=30.05 Aligned_cols=100 Identities=14% Similarity=0.175 Sum_probs=53.5
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE
Q 006006 34 LRVLVV-DDDITCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 34 irVLIV-DDD~~ire~Lk~lL~~~gy~V~tAs--ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI 110 (665)
++++++ .+++..++.+++++... -.|.... ...+..+++.. -|++|+.- .|+ ++|.+. ..+|+|
T Consensus 231 ~~lv~~~g~~~~~~~~l~~~~~~~-~~v~~~g~~g~~~~~~~~~~----ad~~v~~S-----~g~-~lEA~a--~G~PvI 297 (376)
T 1v4v_A 231 LTFVYPVHLNPVVREAVFPVLKGV-RNFVLLDPLEYGSMAALMRA----SLLLVTDS-----GGL-QEEGAA--LGVPVV 297 (376)
T ss_dssp SEEEEECCSCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHT----EEEEEESC-----HHH-HHHHHH--TTCCEE
T ss_pred eEEEEECCCCHHHHHHHHHHhccC-CCEEEECCCCHHHHHHHHHh----CcEEEECC-----cCH-HHHHHH--cCCCEE
Confidence 566664 55554555555554321 1343331 22243444431 57777653 354 446553 568888
Q ss_pred ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 111 TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 111 a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
+..+.....+.++.| .+++.. .+.++|.+++.+++.
T Consensus 298 ~~~~~~~~~~~~~~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 298 VLRNVTERPEGLKAG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp ECSSSCSCHHHHHHT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred eccCCCcchhhhcCC-ceEECC-CCHHHHHHHHHHHHh
Confidence 432211112234556 467774 499999999988875
No 204
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=41.59 E-value=1.5e+02 Score=32.59 Aligned_cols=96 Identities=17% Similarity=0.243 Sum_probs=62.2
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCEE--EEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------CC
Q 006006 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------MD 93 (665)
Q Consensus 33 girVLIVD----DD~~ire~Lk~lL~~~-gy~V--~tAsngeEALelLre~k~~PDLVIlDI~MP~------------mD 93 (665)
+..++.+| +.....+.++.+-+.. ...| ..+.+.++|..+++.. .|.|++.+. |+ ..
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aG---aD~I~Vg~g-~Gs~~~tr~~~g~g~p 318 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAG---VSAVKVGIG-PGSICTTRIVTGVGVP 318 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHT---CSEEEECSS-CCTTBCHHHHHCCCCC
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhC---CCEEEECCC-CCcCcccccccCCCcc
Confidence 45677776 4455666676666654 3333 3578888888777653 799987532 21 12
Q ss_pred HHHHHHHHhc---cCCccEE---ecCchHHHHHHHHcCCCeEEeC
Q 006006 94 GFKLLEHIGL---EMDLPVI---TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 94 GlELLe~Ir~---~~~IPVI---a~sd~e~a~kALe~GA~DYLlK 132 (665)
-++++..+.+ ...+||| .-.+...+.+|+.+||+..+.=
T Consensus 319 ~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 319 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363 (496)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence 3444555432 3469999 3567888999999999887763
No 205
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=41.56 E-value=65 Score=30.12 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=43.9
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCE--E-EEECCHHHHHHHHHHcC--CCceEEEEeCC
Q 006006 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRERK--GCFDVVLSDVH 88 (665)
Q Consensus 29 ~fP~girVLIVDDD~~ire~Lk~lL~~~gy~--V-~tAsngeEALelLre~k--~~PDLVIlDI~ 88 (665)
.+|.+.+|..+|-++...+..++.+...+.. + ....+..+.+..+.... ..+|+|++|..
T Consensus 85 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~ 149 (225)
T 3tr6_A 85 ALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD 149 (225)
T ss_dssp TCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC
T ss_pred hCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC
Confidence 4565789999999999999999998876542 4 35677777766554310 24999999874
No 206
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=41.07 E-value=19 Score=34.13 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhccC-CccEE----ecC-chHHHHHHHHcCCCeEEeCCCC
Q 006006 64 SQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLEM-DLPVI----TDG-RVSAVMRGIRHGACDYLIKPIR 135 (665)
Q Consensus 64 sngeEALelLre~k~~PDLVIlDI~MP~--mDGlELLe~Ir~~~-~IPVI----a~s-d~e~a~kALe~GA~DYLlKPv~ 135 (665)
.+.+++++.++......| ++++.++- .+|.++++.|++.. +.|++ .++ -..++..+.+.||+....-+..
T Consensus 10 ~~~~~~~~~~~~~~~~v~--~iev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~ 87 (207)
T 3ajx_A 10 LSTEAALELAGKVAEYVD--IIELGTPLIKAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSA 87 (207)
T ss_dssp SCHHHHHHHHHHHGGGCS--EEEECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTS
T ss_pred CCHHHHHHHHHHhhccCC--EEEECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccC
Confidence 356777777766542124 36665542 35778888887653 67776 333 2344788999999988766654
Q ss_pred H-HHHHHHHHH
Q 006006 136 E-EELKNIWQH 145 (665)
Q Consensus 136 ~-eEL~~aLq~ 145 (665)
. +.+..+++.
T Consensus 88 ~~~~~~~~~~~ 98 (207)
T 3ajx_A 88 DDSTIAGAVKA 98 (207)
T ss_dssp CHHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 4 445444443
No 207
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=40.60 E-value=59 Score=32.49 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=62.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHHcCCCceEEEEeCCC------CCCCHHHHHHHHhcc
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTC--SQAAVALDILRERKGCFDVVLSDVHM------PDMDGFKLLEHIGLE 104 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tA--sngeEALelLre~k~~PDLVIlDI~M------P~mDGlELLe~Ir~~ 104 (665)
.++++|+.+.+. ...++++.....-.|... -+.++..+++.. .|++|+-... ++.-|+.+++.+.
T Consensus 229 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a-- 301 (394)
T 3okp_A 229 DAQLLIVGSGRY-ESTLRRLATDVSQNVKFLGRLEYQDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA-- 301 (394)
T ss_dssp TCEEEEECCCTT-HHHHHHHTGGGGGGEEEEESCCHHHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH--
T ss_pred CeEEEEEcCchH-HHHHHHHHhcccCeEEEcCCCCHHHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH--
Confidence 356666665432 233333332211223322 233566666643 4777774433 1444667777764
Q ss_pred CCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 105 MDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 105 ~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
..+|||+.+. ....+.+..| .+++..|-+.++|.+++.+++.
T Consensus 302 ~G~PvI~~~~-~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~ 343 (394)
T 3okp_A 302 CGVPVIAGTS-GGAPETVTPA-TGLVVEGSDVDKLSELLIELLD 343 (394)
T ss_dssp TTCCEEECSS-TTGGGGCCTT-TEEECCTTCHHHHHHHHHHHHT
T ss_pred cCCCEEEeCC-CChHHHHhcC-CceEeCCCCHHHHHHHHHHHHh
Confidence 4588885332 2233445667 8999999999999999998875
No 208
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=40.36 E-value=1e+02 Score=29.32 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=48.0
Q ss_pred CCEE-EEECCHHHHHHHHHHcCCCceEEEEeCC-----CCC----CCHHHHHHHHhccCCccEE---ecCchHHHHHHHH
Q 006006 57 LYNV-TTCSQAAVALDILRERKGCFDVVLSDVH-----MPD----MDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIR 123 (665)
Q Consensus 57 gy~V-~tAsngeEALelLre~k~~PDLVIlDI~-----MP~----mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe 123 (665)
+..+ ..+.+.+++.++.+ .. .|+|.+-.. ..+ ..++++++++++..++||| .-.+.+.+.++++
T Consensus 119 ~~~v~~~~~t~~e~~~~~~-~G--~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~ 195 (223)
T 1y0e_A 119 NVEIMADIATVEEAKNAAR-LG--FDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMD 195 (223)
T ss_dssp TSEEEEECSSHHHHHHHHH-TT--CSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHH
T ss_pred CceEEecCCCHHHHHHHHH-cC--CCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHHH
Confidence 4443 46777888776544 33 788765321 011 1246678888766689998 3347888999999
Q ss_pred cCCCeEEeC
Q 006006 124 HGACDYLIK 132 (665)
Q Consensus 124 ~GA~DYLlK 132 (665)
.||+..+.=
T Consensus 196 ~Gad~v~vG 204 (223)
T 1y0e_A 196 LGVHCSVVG 204 (223)
T ss_dssp TTCSEEEEC
T ss_pred cCCCEEEEC
Confidence 999988763
No 209
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=40.23 E-value=98 Score=30.28 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCCceEEE-EeCCCCC-CC--HHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEeC
Q 006006 66 AAVALDILRERKGCFDVVL-SDVHMPD-MD--GFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 66 geEALelLre~k~~PDLVI-lDI~MP~-mD--GlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlK 132 (665)
..+..+.+.+.. ++.|+ .++.-.+ .. .+++++++++...+||| .-.+.+.+.++++.||++.+.=
T Consensus 158 ~~e~~~~~~~~G--~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 158 LRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHHTT--CSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHcC--CCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 455555555543 66555 4543211 11 27899999877889999 3456678888888999987754
No 210
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=40.10 E-value=1.3e+02 Score=30.93 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=50.4
Q ss_pred CCCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCC
Q 006006 56 CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGA 126 (665)
Q Consensus 56 ~gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP-----~mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA 126 (665)
.+..+. .+.+.++|..+.+ .. +|.|+++-.-. ....+++++++++..++||| .-.+.+.+.+++..||
T Consensus 109 ~g~~v~~~v~~~~~a~~~~~-~G--aD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~~GA 185 (332)
T 2z6i_A 109 AGIIVIPVVPSVALAKRMEK-IG--ADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFMLGA 185 (332)
T ss_dssp TTCEEEEEESSHHHHHHHHH-TT--CSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTTC
T ss_pred cCCeEEEEeCCHHHHHHHHH-cC--CCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCC
Confidence 355443 5677777765544 33 89888863211 23468889998777789999 3456788889999999
Q ss_pred CeEEe
Q 006006 127 CDYLI 131 (665)
Q Consensus 127 ~DYLl 131 (665)
+....
T Consensus 186 dgV~v 190 (332)
T 2z6i_A 186 EAVQV 190 (332)
T ss_dssp SEEEE
T ss_pred CEEEe
Confidence 88654
No 211
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=40.09 E-value=94 Score=35.18 Aligned_cols=99 Identities=13% Similarity=0.158 Sum_probs=65.7
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHh
Q 006006 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG 102 (665)
Q Consensus 32 ~girVLIV----DDD~~ire~Lk~lL~~~gy~V~tA---sngeEALelLre~k~~PDLVIlDI~MP~-mD-GlELLe~Ir 102 (665)
.+-+||++ |-|.+=...+..+|+..||+|... -..++.++.+++.. ||+|.+-..|.. ++ --++++.++
T Consensus 97 ~~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~--~diVgLS~l~t~~~~~m~~~i~~Lr 174 (579)
T 3bul_A 97 TNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVN--ADLIGLSGLITPSLDEMVNVAKEME 174 (579)
T ss_dssp CSCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHT--CSEEEEECCSTHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEecCCCCHHHHHHHHHHHH
Confidence 34578888 677788888889999999998743 46788889998887 999999887743 22 223555564
Q ss_pred c-cCCccEE-e--cCchHHHHHHH---HcCCCeEEeC
Q 006006 103 L-EMDLPVI-T--DGRVSAVMRGI---RHGACDYLIK 132 (665)
Q Consensus 103 ~-~~~IPVI-a--~sd~e~a~kAL---e~GA~DYLlK 132 (665)
+ ..++||+ + .-..+++...+ -.||+.|...
T Consensus 175 ~~g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~D 211 (579)
T 3bul_A 175 RQGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQN 211 (579)
T ss_dssp HTTCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECCS
T ss_pred HcCCCCeEEEEccccchhhhhhhhhhcccCCeEEECC
Confidence 3 3578887 2 22333332111 1288888663
No 212
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=39.88 E-value=1.1e+02 Score=29.13 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=44.7
Q ss_pred ECCHHHHHHHHHHcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 63 CSQAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 63 AsngeEALelLre~k~~PD-LVIlDI~MP~m---DGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
..+..+..+.+.+.. .| |.+.|...... ..+++++++++...+|++ ...+.+.+.++++.||+...+
T Consensus 32 ~~~~~~~a~~~~~~G--~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 32 VGDPVEMAVRYEEEG--ADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp EECHHHHHHHHHHTT--CSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cccHHHHHHHHHHcC--CCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 345666666666554 77 55666543222 246778888776789988 345677788899999887764
No 213
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=39.62 E-value=38 Score=36.85 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEec----CchHHHHHHHHcCCCeEE-eCCCCHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITD----GRVSAVMRGIRHGACDYL-IKPIREEEL 139 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~----sd~e~a~kALe~GA~DYL-lKPv~~eEL 139 (665)
+.+++++.+.+.-+.++|+.+.-=++..| ++-.++|++...+||++. .+...+.++++.|++++| +|+-...-|
T Consensus 274 t~~eai~~~~~~l~~y~i~~iEdPl~~dD-~~g~~~l~~~~~ipI~gDE~~vt~~~~~~~~i~~~a~d~i~ikv~qiGGi 352 (436)
T 2al1_A 274 TGPQLADLYHSLMKRYPIVSIEDPFAEDD-WEAWSHFFKTAGIQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTL 352 (436)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEECCSCTTC-HHHHHHHHTTCCSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCH
T ss_pred CHHHHHHHHHHHHHhCCcEEEECCCCCcC-HHHHHHHHhcCCCeEEECCcccCCHHHHHHHHHhCCCCEEEechhhcCCH
Confidence 55777766543211278888877676655 566677776678999833 346778899999987775 677544444
Q ss_pred HHHH
Q 006006 140 KNIW 143 (665)
Q Consensus 140 ~~aL 143 (665)
.+++
T Consensus 353 tea~ 356 (436)
T 2al1_A 353 SESI 356 (436)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 214
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=39.58 E-value=46 Score=35.64 Aligned_cols=67 Identities=24% Similarity=0.323 Sum_probs=50.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCccEEe--cCchHHHHHHHHcCCCeEEeCCCC---HHHHHHHHHHHHH
Q 006006 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT--DGRVSAVMRGIRHGACDYLIKPIR---EEELKNIWQHVVR 148 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa--~sd~e~a~kALe~GA~DYLlKPv~---~eEL~~aLq~Vlr 148 (665)
.| |+++-+|+++-.+.++.|++..++|+++ +-+...+.+|++.|++.+=.-|=+ .+.+...++.+.+
T Consensus 60 ~d--iVRvavp~~~~a~al~~I~~~~~vPlvaDiHf~~~lal~a~e~G~dklRINPGNig~~~~~~~vv~~ak~ 131 (366)
T 3noy_A 60 CE--IVRVAVPHKEDVEALEEIVKKSPMPVIADIHFAPSYAFLSMEKGVHGIRINPGNIGKEEIVREIVEEAKR 131 (366)
T ss_dssp CC--EEEEECCSHHHHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHTTCSEEEECHHHHSCHHHHHHHHHHHHH
T ss_pred CC--EEEeCCCChHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHhCCCeEEECCcccCchhHHHHHHHHHHH
Confidence 45 6677889988888999998888999994 567778889999999998777733 3445555555443
No 215
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=39.23 E-value=36 Score=32.21 Aligned_cols=80 Identities=11% Similarity=0.068 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCccEE----ecCchHH-HHHHHHcCCCeEEeCCCCH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVI----TDGRVSA-VMRGIRHGACDYLIKPIRE 136 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~--mDGlELLe~Ir~~-~~IPVI----a~sd~e~-a~kALe~GA~DYLlKPv~~ 136 (665)
+.+++++.++......|+| .+.+|- ..|+++++.+|+. +++|+. .....++ +.++.++||+..+.--...
T Consensus 11 ~~~~~~~~~~~~~~~~dii--e~G~p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~ 88 (211)
T 3f4w_A 11 TLPEAMVFMDKVVDDVDII--EVGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTD 88 (211)
T ss_dssp CHHHHHHHHHHHGGGCSEE--EECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred CHHHHHHHHHHhhcCccEE--EeCcHHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCC
Confidence 4556666665432235543 223343 3578899999866 578876 2233444 8889999998888743333
Q ss_pred -HHHHHHHHHH
Q 006006 137 -EELKNIWQHV 146 (665)
Q Consensus 137 -eEL~~aLq~V 146 (665)
+.+...++.+
T Consensus 89 ~~~~~~~~~~~ 99 (211)
T 3f4w_A 89 VLTIQSCIRAA 99 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 4444444443
No 216
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=39.10 E-value=28 Score=36.17 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=30.3
Q ss_pred HHHHHHHhccCCccEEec---CchHHHHHH-HHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 95 FKLLEHIGLEMDLPVITD---GRVSAVMRG-IRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 95 lELLe~Ir~~~~IPVIa~---sd~e~a~kA-Le~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
.-++|.+. ..+|||+. .....+.+. .+. +++..+-+.++|.+++.+++..
T Consensus 293 ~~~lEAmA--~G~PVI~~~~~~~~~e~~~~~~~~---G~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 293 HNLLEPTC--WGIPVIYGPYTHKVNDLKEFLEKE---GAGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp CCCHHHHT--TTCCEEECSCCTTSHHHHHHHHHT---TCEEECCSHHHHHHHHHHHHHS
T ss_pred cCHHHHHH--hCCCEEECCCccChHHHHHHHHHC---CCEEEeCCHHHHHHHHHHHHhH
Confidence 33555542 56899942 223333332 233 4667677899999999988753
No 217
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=38.76 E-value=18 Score=30.85 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=28.8
Q ss_pred HHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHH
Q 006006 245 KRILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 280 (665)
Q Consensus 245 KkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~ 280 (665)
.+||++|...+++..|||..+|.+. +--++.+++.
T Consensus 20 ~~IL~lL~~~g~sa~eLAk~LgiSk-~aVr~~L~~L 54 (82)
T 1oyi_A 20 CEAIKTIGIEGATAAQLTRQLNMEK-REVNKALYDL 54 (82)
T ss_dssp HHHHHHHSSSTEEHHHHHHHSSSCH-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCH-HHHHHHHHHH
Confidence 6789999988899999999999876 4566666665
No 218
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=38.70 E-value=1.6e+02 Score=30.34 Aligned_cols=87 Identities=13% Similarity=0.147 Sum_probs=56.5
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCC-------------------------CCC----------CCHHHHHHHHhcc
Q 006006 60 VTTCSQAAVALDILRERKGCFDVVLSDVH-------------------------MPD----------MDGFKLLEHIGLE 104 (665)
Q Consensus 60 V~tAsngeEALelLre~k~~PDLVIlDI~-------------------------MP~----------mDGlELLe~Ir~~ 104 (665)
+..+.+.+||+..+... +|+|.+.-. |+. ...++++++++..
T Consensus 129 vv~v~~~~Ea~~a~~~G---ad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~ 205 (297)
T 4adt_A 129 VCGCTNLGEALRRISEG---ASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKL 205 (297)
T ss_dssp EEEESSHHHHHHHHHHT---CSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHhCC---CCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHh
Confidence 34678888888877653 788887743 111 1235677777665
Q ss_pred CCccEE-----ecCchHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHHH
Q 006006 105 MDLPVI-----TDGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 149 (665)
Q Consensus 105 ~~IPVI-----a~sd~e~a~kALe~GA~DYLl-----KPv~~eEL~~aLq~Vlrk 149 (665)
..+|+| .-.+.+.+.+++++||+.++. |.-++.+..+.+...+..
T Consensus 206 ~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~ 260 (297)
T 4adt_A 206 KRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSN 260 (297)
T ss_dssp TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHh
Confidence 556654 234778888999999999886 444666555555555443
No 219
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=38.68 E-value=1.4e+02 Score=28.23 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHcCCCceEEE-EeCCCCCC---CHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe------
Q 006006 65 QAAVALDILRERKGCFDVVL-SDVHMPDM---DGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI------ 131 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVI-lDI~MP~m---DGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl------ 131 (665)
+..+.++.+.+.. .|.|+ .++...+. -.++.++++++..++|+| .-.+.+.+.++++.||+..+.
T Consensus 155 ~~~e~~~~~~~~G--~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~ 232 (253)
T 1h5y_A 155 DAVKWAKEVEELG--AGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF 232 (253)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred CHHHHHHHHHhCC--CCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHc
Confidence 3445555555554 77765 45543221 136788888766688988 234567788888999998764
Q ss_pred CCCCHHHHHHHH
Q 006006 132 KPIREEELKNIW 143 (665)
Q Consensus 132 KPv~~eEL~~aL 143 (665)
.+.+.+++.+.+
T Consensus 233 ~~~~~~~~~~~l 244 (253)
T 1h5y_A 233 RVLSIAQVKRYL 244 (253)
T ss_dssp TSSCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 344555554443
No 220
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=38.53 E-value=1.1e+02 Score=29.60 Aligned_cols=75 Identities=16% Similarity=0.305 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCC----CCCCCHHHHHHHHhccCCccEE---ecCchHHHHHHHHc-----C-CCeEE
Q 006006 65 QAAVALDILRERKGCFD-VVLSDVH----MPDMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRH-----G-ACDYL 130 (665)
Q Consensus 65 ngeEALelLre~k~~PD-LVIlDI~----MP~mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~-----G-A~DYL 130 (665)
+..+..+.+.+.. ++ |+++++. +.+. .+++++++++...+||| .-.+.+.+.++++. | |++.+
T Consensus 145 ~~~e~~~~~~~~G--~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~ 221 (241)
T 1qo2_A 145 DPVSLLKRLKEYG--LEEIVHTEIEKDGTLQEH-DFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHHTTT--CCEEEEEETTHHHHTCCC-CHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHhCC--CCEEEEEeecccccCCcC-CHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Confidence 4556555555443 77 6666653 2233 38899999876789999 34566788888887 9 88876
Q ss_pred e------CCCCHHHHHHH
Q 006006 131 I------KPIREEELKNI 142 (665)
Q Consensus 131 l------KPv~~eEL~~a 142 (665)
. .+++.+++++.
T Consensus 222 vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 222 VGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp ECHHHHTTSSCHHHHHHH
T ss_pred eeHHHHcCCCCHHHHHHH
Confidence 4 46777776554
No 221
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=38.18 E-value=2.8e+02 Score=28.10 Aligned_cols=107 Identities=20% Similarity=0.221 Sum_probs=65.2
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHhCCC--EEEEEC-----CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006006 33 GLRVLVVDDD----ITCLRILEQMLRRCLY--NVTTCS-----QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (665)
Q Consensus 33 girVLIVDDD----~~ire~Lk~lL~~~gy--~V~tAs-----ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~I 101 (665)
.++++|+.+. +...+.++++.+..+. .|.... +.++..+.+.. .|++++--.. +.-|+.++|.+
T Consensus 262 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~----ad~~v~ps~~-E~~~~~~lEAm 336 (416)
T 2x6q_A 262 GVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA----SDVILQMSIR-EGFGLTVTEAM 336 (416)
T ss_dssp TCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH----CSEEEECCSS-CSSCHHHHHHH
T ss_pred CeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh----CCEEEECCCc-CCCccHHHHHH
Confidence 4677777775 3344555555544321 343332 13355555543 4777664332 33466677776
Q ss_pred hccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 102 GLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 102 r~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
. ..+|||+.+. ....+.+..|..+++.. +.++|.+++.+++..
T Consensus 337 a--~G~PvI~~~~-~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~~ 379 (416)
T 2x6q_A 337 W--KGKPVIGRAV-GGIKFQIVDGETGFLVR--DANEAVEVVLYLLKH 379 (416)
T ss_dssp H--TTCCEEEESC-HHHHHHCCBTTTEEEES--SHHHHHHHHHHHHHC
T ss_pred H--cCCCEEEccC-CCChhheecCCCeEEEC--CHHHHHHHHHHHHhC
Confidence 4 4688996543 34556677788999996 999999999888753
No 222
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=38.06 E-value=1.8e+02 Score=29.56 Aligned_cols=61 Identities=18% Similarity=0.089 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE-ecCchHHHHHHHHcCCCeEEeC
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI-TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI-a~sd~e~a~kALe~GA~DYLlK 132 (665)
+.++.++.+.+.. +|+|.+....| .++++.++.. .++++ ...+.+.+.++.+.|++.++.-
T Consensus 84 ~~~~~~~~~~~~g--~d~V~~~~g~p----~~~~~~l~~~-gi~vi~~v~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 84 PYAEYRAAIIEAG--IRVVETAGNDP----GEHIAEFRRH-GVKVIHKCTAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp CHHHHHHHHHHTT--CCEEEEEESCC----HHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHhcC--CCEEEEcCCCc----HHHHHHHHHc-CCCEEeeCCCHHHHHHHHHcCCCEEEEE
Confidence 4467788777765 99999987665 5788888764 67777 4456777888999999988874
No 223
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=37.89 E-value=66 Score=34.67 Aligned_cols=63 Identities=22% Similarity=0.168 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCC-HHHHHHHHhccCCccEE--ecCchHHHHHHHHcCCCeEEe
Q 006006 67 AVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLEMDLPVI--TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 67 eEALelLre~k~~PDLVIlDI~MP~mD-GlELLe~Ir~~~~IPVI--a~sd~e~a~kALe~GA~DYLl 131 (665)
.+.++.+.+.. +|+|++|..-..-. -.++++++++...+||| .-.+.+.+.++.++||+....
T Consensus 146 ~e~~~~lveaG--vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVEAG--VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHHHT--CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHcCCCEEEE
Confidence 45556555555 99999997643222 26788888766578888 356788899999999998887
No 224
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=37.89 E-value=1.3e+02 Score=29.12 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=47.0
Q ss_pred HHHHHHhCCCEEEE-E--CCHHHHHHHHHHcCCCce-EEEEeCCCCCCC---------HHHHHHHHhccCCccEE---ec
Q 006006 49 LEQMLRRCLYNVTT-C--SQAAVALDILRERKGCFD-VVLSDVHMPDMD---------GFKLLEHIGLEMDLPVI---TD 112 (665)
Q Consensus 49 Lk~lL~~~gy~V~t-A--sngeEALelLre~k~~PD-LVIlDI~MP~mD---------GlELLe~Ir~~~~IPVI---a~ 112 (665)
+.+.+++.+..+.. + .+..+.++.+... .| +|.+ +..++.. +++.++++++..++||+ +-
T Consensus 125 ~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI 200 (248)
T 1geq_A 125 FTEIAREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGV 200 (248)
T ss_dssp HHHHHHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCC
T ss_pred HHHHHHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeec
Confidence 34444444544432 2 2446666666554 34 5544 3335432 35677777766678888 34
Q ss_pred CchHHHHHHHHcCCCeEEeC
Q 006006 113 GRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 113 sd~e~a~kALe~GA~DYLlK 132 (665)
...+.+.++++.||+.++.=
T Consensus 201 ~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 201 SKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp CSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHcCCCEEEEc
Confidence 55588888889999999874
No 225
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=37.65 E-value=32 Score=34.23 Aligned_cols=107 Identities=15% Similarity=0.137 Sum_probs=63.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHHcCCCceEEEEeCC---------CCCCCHHHHHHHH
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVH---------MPDMDGFKLLEHI 101 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~t--AsngeEALelLre~k~~PDLVIlDI~---------MP~mDGlELLe~I 101 (665)
.++++|+.+.+ .++.++++.+..+-.|.. .-+..+..+.+.. .|++++=.. ..+.-|+.++|.+
T Consensus 188 ~~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E~~~~~~~EAm 262 (342)
T 2iuy_A 188 GRRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS----AHAVLAMSQAVTGPWGGIWCEPGATVVSEAA 262 (342)
T ss_dssp TCCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH----CSEEEECCCCCCCTTCSCCCCCCCHHHHHHH
T ss_pred CcEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh----CCEEEECCcccccccccccccCccHHHHHHH
Confidence 35677776643 223333443332223332 2234444555553 477776443 1234467777776
Q ss_pred hccCCccEEecCchHHHHHHHHc--CCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 102 GLEMDLPVITDGRVSAVMRGIRH--GACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 102 r~~~~IPVIa~sd~e~a~kALe~--GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
. ..+|||+.+. ....+.++. |..+++..| +.++|.+++.+++.
T Consensus 263 a--~G~PvI~s~~-~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 263 V--SGTPVVGTGN-GCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA 307 (342)
T ss_dssp H--TTCCEEECCT-TTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC
T ss_pred h--cCCCEEEcCC-CChHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH
Confidence 4 5689995443 335566777 888999999 99999998877653
No 226
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=37.15 E-value=32 Score=29.03 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=26.6
Q ss_pred HHHHHHhCCCCCCHHHHHhhhccc--chhHHHHHHHHHhCCC
Q 006006 245 KRILELMNVPGLTRENVASHLQEI--NLQKFRLYLKRLNGVS 284 (665)
Q Consensus 245 KkILeLL~~~~LtI~EVAs~VGYs--D~qYF~k~FKK~~GvT 284 (665)
+.|+.|+. .|++..|||..+|.+ ..++..+..++.+|+.
T Consensus 35 ~~Vl~l~~-~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 35 CLILQEVE-KGFTNQEIADALHLSKRSIEYSLTSIFNKLNVG 75 (90)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 45677766 899999999999985 3344444444555554
No 227
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=37.04 E-value=14 Score=38.91 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.9
Q ss_pred ChhHHHHHHhcCC-------CCCcceeeeeccCC
Q 006006 1 MAALQRIVQSSGG-------SGYGSSRAADVAVP 27 (665)
Q Consensus 1 Lai~~~~V~~mgG-------sg~Gs~f~~~~~~~ 27 (665)
|+|||++|+.||| .|.|++|++.+|..
T Consensus 317 L~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~ 350 (394)
T 2e0a_A 317 LPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKAL 350 (394)
T ss_dssp HHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESS
T ss_pred HHHHHHHHHHhCCEEEEEecCCccEEEEEEeCCC
Confidence 6899999999999 38899999999773
No 228
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=36.97 E-value=56 Score=33.17 Aligned_cols=81 Identities=12% Similarity=0.064 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCC--CC--------------------HHHHHHHHhccCCccEEe--cCc-------
Q 006006 66 AAVALDILRERKGCFDVVLSDVHMPD--MD--------------------GFKLLEHIGLEMDLPVIT--DGR------- 114 (665)
Q Consensus 66 geEALelLre~k~~PDLVIlDI~MP~--mD--------------------GlELLe~Ir~~~~IPVIa--~sd------- 114 (665)
.+..++.++...+..|+|.+++-..+ .| .+++++++|+..++|+|. +.+
T Consensus 29 ~~~~~~~~~~l~~~aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~g~ 108 (271)
T 1ujp_A 29 REGFLQAVEEVLPYADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGP 108 (271)
T ss_dssp HHHHHHHHHHHGGGCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCH
T ss_pred hHHHHHHHHHHHhcCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHhhH
Confidence 34555554432212899888864421 22 356777887767899883 322
Q ss_pred hHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006006 115 VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146 (665)
Q Consensus 115 ~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~V 146 (665)
...+.++.+.||+++|.-.+..+++...+..+
T Consensus 109 ~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 109 ERFFGLFKQAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp HHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 33466788999999999777777766555444
No 229
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=36.91 E-value=14 Score=39.37 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=24.0
Q ss_pred ChhHHHHHHhcCC-------CCCcceeeeeccCC
Q 006006 1 MAALQRIVQSSGG-------SGYGSSRAADVAVP 27 (665)
Q Consensus 1 Lai~~~~V~~mgG-------sg~Gs~f~~~~~~~ 27 (665)
|+|||++|+.||| .|.|++|++.+|..
T Consensus 341 L~I~k~iv~~~gG~I~v~s~~g~Gt~f~i~LP~~ 374 (419)
T 1y8o_A 341 LPISRLYARYFQGDLKLYSMEGVGTDAVIYLKAL 374 (419)
T ss_dssp HHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESC
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCEEEEEEecCC
Confidence 6899999999999 38999999998773
No 230
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=36.81 E-value=92 Score=29.57 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=43.0
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCC--------CCCHHHHHHHHhccCC-ccEE--ecCchHHHHHHHHcCCCeEE
Q 006006 62 TCSQAAVALDILRERKGCFDVVLSDVHMP--------DMDGFKLLEHIGLEMD-LPVI--TDGRVSAVMRGIRHGACDYL 130 (665)
Q Consensus 62 tAsngeEALelLre~k~~PDLVIlDI~MP--------~mDGlELLe~Ir~~~~-IPVI--a~sd~e~a~kALe~GA~DYL 130 (665)
.+.+.+++....+ .. +|.|++..-.| ...|++.++++++... +|++ .--..+.+.++++.||+.+.
T Consensus 122 s~~t~~e~~~a~~-~g--~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~ 198 (227)
T 2tps_A 122 SAHTMSEVKQAEE-DG--ADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVS 198 (227)
T ss_dssp EECSHHHHHHHHH-HT--CSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTTCSEEE
T ss_pred ecCCHHHHHHHHh-CC--CCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHcCCCEEE
Confidence 4677878655543 33 89998632122 1236888888876555 8988 22236667778889998875
Q ss_pred e
Q 006006 131 I 131 (665)
Q Consensus 131 l 131 (665)
.
T Consensus 199 v 199 (227)
T 2tps_A 199 M 199 (227)
T ss_dssp E
T ss_pred E
Confidence 4
No 231
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=36.75 E-value=1.3e+02 Score=29.06 Aligned_cols=66 Identities=12% Similarity=0.151 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCCC---HHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEeC
Q 006006 65 QAAVALDILRERKGCFD-VVLSDVHMPDMD---GFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 65 ngeEALelLre~k~~PD-LVIlDI~MP~mD---GlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlK 132 (665)
+..+..+.+.+.. .| |.+.|....... -+++++++++...+|+| ...+.+.+.++++.||+..++=
T Consensus 32 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 32 DPVEAARAYDEAG--ADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp CHHHHHHHHHHHT--CSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHHcC--CCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 4555555555543 55 455676543322 25667788777789998 3566788999999999887763
No 232
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=36.66 E-value=14 Score=38.78 Aligned_cols=27 Identities=11% Similarity=0.210 Sum_probs=24.0
Q ss_pred ChhHHHHHHhcCC-------CCCcceeeeeccCC
Q 006006 1 MAALQRIVQSSGG-------SGYGSSRAADVAVP 27 (665)
Q Consensus 1 Lai~~~~V~~mgG-------sg~Gs~f~~~~~~~ 27 (665)
|+|||++|+.||| .|.|++|++.+|..
T Consensus 317 L~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~ 350 (394)
T 2btz_A 317 LPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKAL 350 (394)
T ss_dssp HHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESS
T ss_pred HHHHHHHHHHhCCEEEEEecCCCceEEEEEecCC
Confidence 6899999999999 38899999999774
No 233
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=36.65 E-value=1.4e+02 Score=31.18 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eEL~ 140 (665)
+.++|+++++... .+++..++-=++..| ++.+++|++...+||++ ..+...+.++++.|+.|++ .|+....=|.
T Consensus 209 ~~~~a~~~~~~l~-~~~i~~iEqP~~~~d-~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit 286 (372)
T 3tj4_A 209 DLPTCQRFCAAAK-DLDIYWFEEPLWYDD-VTSHARLARNTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLGGIT 286 (372)
T ss_dssp CHHHHHHHHHHTT-TSCEEEEESCSCTTC-HHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHHh-hcCCCEEECCCCchh-HHHHHHHHhhcCCCEEeCCCccCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 5688888887764 468877776555433 66677787777899983 3456677788988877765 8887765555
Q ss_pred HHHHH
Q 006006 141 NIWQH 145 (665)
Q Consensus 141 ~aLq~ 145 (665)
++++-
T Consensus 287 ~~~~i 291 (372)
T 3tj4_A 287 EYIQV 291 (372)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 234
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=36.57 E-value=85 Score=31.38 Aligned_cols=87 Identities=9% Similarity=-0.036 Sum_probs=53.8
Q ss_pred HHHHhCC-CEEEEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---ecCchHHHHHHHHcC
Q 006006 51 QMLRRCL-YNVTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHG 125 (665)
Q Consensus 51 ~lL~~~g-y~V~tAsngeEALelLre~-k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~G 125 (665)
+.|...+ .-|....+.++++++++.. ....++|=+.++ .-++++.++++++...-.+| .--+.+.+..|+++|
T Consensus 29 ~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~--t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AG 106 (232)
T 4e38_A 29 NQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFR--SDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAG 106 (232)
T ss_dssp HHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETT--STTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHT
T ss_pred HHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCC--CCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcC
Confidence 3343333 3456677777777766542 123665555444 55789999999765323455 345688899999999
Q ss_pred CCeEEeCCCCHHHHH
Q 006006 126 ACDYLIKPIREEELK 140 (665)
Q Consensus 126 A~DYLlKPv~~eEL~ 140 (665)
|+..++ |-...++.
T Consensus 107 A~fIvs-P~~~~~vi 120 (232)
T 4e38_A 107 ATFVVS-PGFNPNTV 120 (232)
T ss_dssp CSEEEC-SSCCHHHH
T ss_pred CCEEEe-CCCCHHHH
Confidence 965554 64434443
No 235
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=36.54 E-value=70 Score=33.50 Aligned_cols=105 Identities=10% Similarity=0.060 Sum_probs=62.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CEEE-EE---CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCc
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCL--YNVT-TC---SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~g--y~V~-tA---sngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~I 107 (665)
++|=+-.|-....+.++.+-+..+ +.+. -+ -+.++|++.++... ..++ .++--++ -++.+++|++...+
T Consensus 164 iKik~g~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~-~~~i-~iE~P~~---~~~~~~~l~~~~~i 238 (379)
T 2rdx_A 164 FQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATR-DLDY-ILEQPCR---SYEECQQVRRVADQ 238 (379)
T ss_dssp EEEECCSCHHHHHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTT-TSCC-EEECCSS---SHHHHHHHHTTCCS
T ss_pred EEEeccCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHH-hCCe-EEeCCcC---CHHHHHHHHhhCCC
Confidence 444333232334445554444443 3332 12 25678888887654 3677 6665455 46777888777789
Q ss_pred cEEe---cCchHHHHHHHHcCCCeE-EeCCCCHHHHHHHH
Q 006006 108 PVIT---DGRVSAVMRGIRHGACDY-LIKPIREEELKNIW 143 (665)
Q Consensus 108 PVIa---~sd~e~a~kALe~GA~DY-LlKPv~~eEL~~aL 143 (665)
||++ ..+.+.+.++++.|+.|+ ..|+....-+.+++
T Consensus 239 PI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~ 278 (379)
T 2rdx_A 239 PMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKAR 278 (379)
T ss_dssp CEEECTTCCSHHHHHHHHHHTCCSEEEEETTTTTSHHHHH
T ss_pred CEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCHHHHH
Confidence 9993 345677888888886665 57887654444333
No 236
>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Probab=36.02 E-value=73 Score=33.52 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eEL~ 140 (665)
+.++|+++++... .+++..++--++.. -++.+++|++...+||++ ..+...+.++++.|+.|++ .|+....-|.
T Consensus 211 ~~~~a~~~~~~l~-~~~i~~iE~P~~~~-~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 288 (392)
T 2poz_A 211 TTDETIRFCRKIG-ELDICFVEEPCDPF-DNGALKVISEQIPLPIAVGERVYTRFGFRKIFELQACGIIQPDIGTAGGLM 288 (392)
T ss_dssp CHHHHHHHHHHHG-GGCEEEEECCSCTT-CHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHTTTCCSEECCCTTTSSCHH
T ss_pred CHHHHHHHHHHHH-hcCCCEEECCCCcc-cHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 5688888887653 36777777655543 366777777667899983 2346678888998877765 7886644444
Q ss_pred HHH
Q 006006 141 NIW 143 (665)
Q Consensus 141 ~aL 143 (665)
+++
T Consensus 289 ~~~ 291 (392)
T 2poz_A 289 ETK 291 (392)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 237
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=35.82 E-value=15 Score=38.86 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=23.8
Q ss_pred ChhHHHHHHhcCC-------CCCcceeeeeccCC
Q 006006 1 MAALQRIVQSSGG-------SGYGSSRAADVAVP 27 (665)
Q Consensus 1 Lai~~~~V~~mgG-------sg~Gs~f~~~~~~~ 27 (665)
|+|||++|+.||| .|.|++|++.+|..
T Consensus 330 L~Ivr~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~ 363 (407)
T 2q8g_A 330 LPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKAL 363 (407)
T ss_dssp HHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESS
T ss_pred HHHHHHHHHHhCCEEEEEEcCCCceEEEEEECCC
Confidence 6899999999999 38899999998763
No 238
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=35.77 E-value=94 Score=29.73 Aligned_cols=60 Identities=20% Similarity=0.346 Sum_probs=42.9
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHHcC--CCceEEEEeCC
Q 006006 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRERK--GCFDVVLSDVH 88 (665)
Q Consensus 29 ~fP~girVLIVDDD~~ire~Lk~lL~~~gy--~V~-tAsngeEALelLre~k--~~PDLVIlDI~ 88 (665)
.+|.+.+|..+|-++...+..++.+...+. .+. ...+..+.+..+.... ..+|+|++|..
T Consensus 93 ~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~ 157 (232)
T 3cbg_A 93 QLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD 157 (232)
T ss_dssp TSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC
Confidence 355567999999999999998888876544 243 5677777666554311 34999999964
No 239
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=35.55 E-value=7.9 Score=44.42 Aligned_cols=7 Identities=14% Similarity=0.178 Sum_probs=2.2
Q ss_pred hhHHHHH
Q 006006 424 MLMDILH 430 (665)
Q Consensus 424 ~~~~~~~ 430 (665)
.+-+.+|
T Consensus 72 ~~~~~~~ 78 (727)
T 4b8c_D 72 AMKKYLA 78 (727)
T ss_dssp HHHHHC-
T ss_pred HHHHHHh
Confidence 3333333
No 240
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Probab=35.54 E-value=47 Score=36.15 Aligned_cols=79 Identities=13% Similarity=0.188 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEec----CchHHHHHHHHcCCCeEE-eCCCCHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITD----GRVSAVMRGIRHGACDYL-IKPIREEEL 139 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~----sd~e~a~kALe~GA~DYL-lKPv~~eEL 139 (665)
+.+++++.+.+.-+.++|+.+.-=++..| ++-.++|++...+||++. .+...+.++++.|++++| +|+-...-|
T Consensus 271 t~~e~~~~~~~ll~~y~i~~IEdPl~~dD-~~g~~~L~~~~~ipI~gDE~~vt~~~~~~~~i~~~a~d~i~iKv~qiGGi 349 (439)
T 2akz_A 271 TGDQLGALYQDFVRDYPVVSIEDPFDQDD-WAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSV 349 (439)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEECCSCTTC-HHHHHHHHHTCSSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCH
T ss_pred CHHHHHHHHHHHHHhCCCcEEECCCCccc-HHHHHHHHhCCCCEEEeCCCccCCHHHHHHHHHhCCCCEEEechhhcCCH
Confidence 55777666543211277888877666555 566666766677999832 356778899999977765 677544444
Q ss_pred HHHHH
Q 006006 140 KNIWQ 144 (665)
Q Consensus 140 ~~aLq 144 (665)
.++++
T Consensus 350 tea~~ 354 (439)
T 2akz_A 350 TEAIQ 354 (439)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 241
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=34.83 E-value=24 Score=34.11 Aligned_cols=81 Identities=10% Similarity=0.007 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCccEE----ecCc-hHHHHHHHHcCCCeEEeCCCC
Q 006006 64 SQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVI----TDGR-VSAVMRGIRHGACDYLIKPIR 135 (665)
Q Consensus 64 sngeEALelLre~k~~PDLVIlDI~MP~--mDGlELLe~Ir~~-~~IPVI----a~sd-~e~a~kALe~GA~DYLlKPv~ 135 (665)
.+.++++++++... ..+-++++.+|- ..|+++++.||+. ++.|++ ..+. ..++..+.++||+....-...
T Consensus 16 ~~~~~~~~~~~~~~--~~vd~ie~g~~~~~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~ 93 (218)
T 3jr2_A 16 TNLTDAVAVASNVA--SYVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAA 93 (218)
T ss_dssp SSHHHHHHHHHHHG--GGCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTS
T ss_pred CCHHHHHHHHHHhc--CCceEEEeCcHHHHhcCHHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCC
Confidence 45566777666543 223355665542 2467888888765 455665 1222 335677889999766664444
Q ss_pred HHH-HHHHHHHH
Q 006006 136 EEE-LKNIWQHV 146 (665)
Q Consensus 136 ~eE-L~~aLq~V 146 (665)
.++ +.++++.+
T Consensus 94 ~~~~~~~~~~~~ 105 (218)
T 3jr2_A 94 HIATIAACKKVA 105 (218)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 333 44444443
No 242
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=34.78 E-value=55 Score=32.11 Aligned_cols=80 Identities=14% Similarity=0.047 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCC---C-CC-CCHHHHHHHHhccCCccEE----ecCchHHHHHHHHcCCCeEEeCCC-
Q 006006 65 QAAVALDILRERKGCFDVVLSDVH---M-PD-MDGFKLLEHIGLEMDLPVI----TDGRVSAVMRGIRHGACDYLIKPI- 134 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~---M-P~-mDGlELLe~Ir~~~~IPVI----a~sd~e~a~kALe~GA~DYLlKPv- 134 (665)
+..+.++.+.+.. .|++=+|+. . |. ..|.++++.||+..+.|+. ..+-..++..+.+.||+....-..
T Consensus 18 ~l~~~i~~~~~~G--ad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~aGadgv~vh~e~ 95 (230)
T 1tqj_A 18 RLGEEIKAVDEAG--ADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEH 95 (230)
T ss_dssp GHHHHHHHHHHTT--CSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEEECST
T ss_pred HHHHHHHHHHHcC--CCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHHcCCCEEEECccc
Confidence 4456666666543 677766662 1 22 2367999999876555543 333344678899999998866544
Q ss_pred -CHHHHHHHHHHH
Q 006006 135 -REEELKNIWQHV 146 (665)
Q Consensus 135 -~~eEL~~aLq~V 146 (665)
..+++.+.++.+
T Consensus 96 ~~~~~~~~~~~~i 108 (230)
T 1tqj_A 96 NASPHLHRTLCQI 108 (230)
T ss_dssp TTCTTHHHHHHHH
T ss_pred ccchhHHHHHHHH
Confidence 444555555554
No 243
>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A
Probab=34.39 E-value=1.3e+02 Score=31.58 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHcCCCc-eEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHHH
Q 006006 65 QAAVALDILRERKGCF-DVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEEL 139 (665)
Q Consensus 65 ngeEALelLre~k~~P-DLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eEL 139 (665)
+.++|++.++... .+ ++..++--+|. +-++.++++++...+||++ ..+...+.++++.|+.|++ .|+....-|
T Consensus 196 ~~~~a~~~~~~l~-~~~~i~~iEqP~~~-~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi 273 (382)
T 2gdq_A 196 DAAAAFKWERYFS-EWTNIGWLEEPLPF-DQPQDYAMLRSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGI 273 (382)
T ss_dssp CHHHHHTTHHHHT-TCSCEEEEECCSCS-SCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHH
T ss_pred CHHHHHHHHHHHh-hccCCeEEECCCCc-ccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCH
Confidence 5678888887654 35 77777765554 3367778887777899983 3456778889998877765 788775555
Q ss_pred HHHHH
Q 006006 140 KNIWQ 144 (665)
Q Consensus 140 ~~aLq 144 (665)
.++++
T Consensus 274 t~~~~ 278 (382)
T 2gdq_A 274 DEFRD 278 (382)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 244
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=34.36 E-value=90 Score=30.41 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCC---CCCHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 65 QAAVALDILRERKGCFD-VVLSDVHMP---DMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 65 ngeEALelLre~k~~PD-LVIlDI~MP---~mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
+..+..+.+.+.. .| |.+.|+.-. ...-+++++++++...+|+| .-.+.+.+.++++.||+..++
T Consensus 36 ~~~~~a~~~~~~G--~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHHHTT--CSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHHcC--CCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 4455555555543 66 445676422 12237889999887889998 346778889999999877664
No 245
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=34.32 E-value=1.3e+02 Score=26.32 Aligned_cols=81 Identities=9% Similarity=0.032 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCccEE--e-cCchHH-HHHHHHcCCCeEEeC----CCC
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPVI--T-DGRVSA-VMRGIRHGACDYLIK----PIR 135 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP-~mDGlELLe~Ir~~~~IPVI--a-~sd~e~-a~kALe~GA~DYLlK----Pv~ 135 (665)
.+.+|.+.+++.. .++=++|++.. -.|--.+.+.++....+.++ . ..-+.. +..+...-...++.| |++
T Consensus 27 ~a~eA~~~L~~~G--i~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~~~~G~l~~~i~~~~~~~~~~~i~~~~G~~~~ 104 (118)
T 3ju3_A 27 PILDVIEDLKEEG--ISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNYTAQAAQMIKLYTGIDIKNKILKYNGRHMT 104 (118)
T ss_dssp HHHHHHHHHHHTT--CCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCBTTBCCC
T ss_pred HHHHHHHHHHHCC--CceEEEEECeEecCCHHHHHHHHcCCCEEEEEECCCCCcHHHHHHHHcCCCceeEEeeeCCeeCC
Confidence 3456667776654 78888888765 46765566666555555555 2 122332 322332223456654 899
Q ss_pred HHHHHHHHHHHH
Q 006006 136 EEELKNIWQHVV 147 (665)
Q Consensus 136 ~eEL~~aLq~Vl 147 (665)
++++.+.++.++
T Consensus 105 ~~ei~~~i~~~~ 116 (118)
T 3ju3_A 105 EDEILKSAKEIL 116 (118)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 246
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=34.22 E-value=27 Score=36.17 Aligned_cols=56 Identities=11% Similarity=0.004 Sum_probs=41.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI 87 (665)
.+-++++||-++...+.|++.++...-......++.+++..+......+|||++|=
T Consensus 112 ~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP 167 (283)
T 2oo3_A 112 SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP 167 (283)
T ss_dssp TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence 34699999999999999988886633223356788888876654333489999994
No 247
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=34.18 E-value=82 Score=31.10 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=43.9
Q ss_pred CceEEEEeCCCC--CCC--------------------HHHHHHHHhccCCccEEe--cCchHH---HHHHHHcCCCeEEe
Q 006006 79 CFDVVLSDVHMP--DMD--------------------GFKLLEHIGLEMDLPVIT--DGRVSA---VMRGIRHGACDYLI 131 (665)
Q Consensus 79 ~PDLVIlDI~MP--~mD--------------------GlELLe~Ir~~~~IPVIa--~sd~e~---a~kALe~GA~DYLl 131 (665)
..|+|-+++-.. -+| ++++++++++..++|++. +.+..+ +.++.+.||++++.
T Consensus 45 Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~~~~~~~~~~~~~a~~aGadgv~v 124 (262)
T 1rd5_A 45 GADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIV 124 (262)
T ss_dssp TCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHHHHTTCCEEEC
T ss_pred CCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHHHHHHHHHcCCCEEEE
Confidence 389888887443 233 467788888777889872 333221 33488999999998
Q ss_pred CCCCHHHHHHHHHH
Q 006006 132 KPIREEELKNIWQH 145 (665)
Q Consensus 132 KPv~~eEL~~aLq~ 145 (665)
-....+++.+.+..
T Consensus 125 ~d~~~~~~~~~~~~ 138 (262)
T 1rd5_A 125 PDLPYVAAHSLWSE 138 (262)
T ss_dssp TTCBTTTHHHHHHH
T ss_pred cCCChhhHHHHHHH
Confidence 65565665555544
No 248
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=33.90 E-value=1.3e+02 Score=29.23 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=66.7
Q ss_pred CCccEEEEEeCCH----HHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHHcCCCceEEEEeCCC----CC-CCHHHHHH
Q 006006 31 PAGLRVLVVDDDI----TCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM----PD-MDGFKLLE 99 (665)
Q Consensus 31 P~girVLIVDDD~----~ire~Lk~lL~~~gy~V~--tAsngeEALelLre~k~~PDLVIlDI~M----P~-mDGlELLe 99 (665)
|..+.+=|-|... .......+.|+..|+.+. -+..+...+..+...+ ||.|=+|..+ .. .....+++
T Consensus 122 ~~~l~lEitE~~~~~~~~~~~~~l~~l~~~G~~ialDdfG~g~ssl~~L~~l~--~d~iKiD~~~v~~~~~~~~~~~~~~ 199 (259)
T 3s83_A 122 RGALKLEVTESDIMRDPERAAVILKTLRDAGAGLALDDFGTGFSSLSYLTRLP--FDTLKIDRYFVRTMGNNAGSAKIVR 199 (259)
T ss_dssp TTSEEEEEEHHHHHHCHHHHHHHHHHHHHHTCEEEEECC---CHHHHHHHHSC--CCEEEECHHHHHHTTTCHHHHHHHH
T ss_pred cceEEEEECCchhhhCHHHHHHHHHHHHHCCCEEEEECCCCCchhHHHHHhCC--CCEEEECHHHHhhhhcCchHHHHHH
Confidence 3445555555321 222222334455588775 4566677888888877 9999999532 11 12233444
Q ss_pred HH---hccCCccEE--ecCchHHHHHHHHcCCCe----EEeCCCCHHHHHHHHHH
Q 006006 100 HI---GLEMDLPVI--TDGRVSAVMRGIRHGACD----YLIKPIREEELKNIWQH 145 (665)
Q Consensus 100 ~I---r~~~~IPVI--a~sd~e~a~kALe~GA~D----YLlKPv~~eEL~~aLq~ 145 (665)
.+ .+...+.+| .-.+.+....+.+.|++. |+.||...+++...++.
T Consensus 200 ~i~~~a~~~g~~viaeGVEt~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 200 SVVKLGQDLDLEVVAEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHHTTCEEEECCCCSHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 44 234677888 445666666677888753 36799999998776543
No 249
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=33.75 E-value=99 Score=32.87 Aligned_cols=63 Identities=14% Similarity=-0.038 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCC-HHHHHHHHhcc-CCccEEe--cCchHHHHHHHHcCCCeEEe
Q 006006 67 AVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLE-MDLPVIT--DGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 67 eEALelLre~k~~PDLVIlDI~MP~mD-GlELLe~Ir~~-~~IPVIa--~sd~e~a~kALe~GA~DYLl 131 (665)
.+.++.+.+.. +|+|.+|....... -++.++.|++. +.+|||. -.+.+.++++.+.||+....
T Consensus 102 ~e~~~~a~~aG--vdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 102 LQRAEALRDAG--ADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHHHTT--CCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEE
Confidence 34445554444 99999997553322 25677888764 5788883 56788899999999988875
No 250
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=33.39 E-value=69 Score=31.84 Aligned_cols=80 Identities=13% Similarity=0.147 Sum_probs=49.3
Q ss_pred EEEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEeCCCC
Q 006006 60 VTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKPIR 135 (665)
Q Consensus 60 V~tAsngeEALelLre~-k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlKPv~ 135 (665)
|....+.++++.+.+.. ....++|=+.++- -++++.++.|++...-.+| ..-+.+.+.+++++||.-.+.--++
T Consensus 18 Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t--~~a~~~I~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fivsP~~~ 95 (217)
T 3lab_A 18 VIVIDDLVHAIPMAKALVAGGVHLLEVTLRT--EAGLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLT 95 (217)
T ss_dssp EECCSCGGGHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEEEESSCC
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCEEEEeCCC--ccHHHHHHHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEEEeCCCc
Confidence 34455666666655432 1236655555544 4689999999765433566 3457889999999999766553344
Q ss_pred HHHHHH
Q 006006 136 EEELKN 141 (665)
Q Consensus 136 ~eEL~~ 141 (665)
.+-++.
T Consensus 96 ~evi~~ 101 (217)
T 3lab_A 96 PELIEK 101 (217)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 251
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=33.19 E-value=2.1e+02 Score=29.98 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=28.2
Q ss_pred CCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 105 MDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 105 ~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
..+|+|...+.....+.++.| ..++..+ +.++|.+++.+++..
T Consensus 319 ~g~PvV~~~~~~~~~e~v~~g-~~~lv~~-d~~~l~~ai~~ll~~ 361 (403)
T 3ot5_A 319 MGVPVLVLRDTTERPEGIEAG-TLKLIGT-NKENLIKEALDLLDN 361 (403)
T ss_dssp TTCCEEECCSSCSCHHHHHHT-SEEECCS-CHHHHHHHHHHHHHC
T ss_pred hCCCEEEecCCCcchhheeCC-cEEEcCC-CHHHHHHHHHHHHcC
Confidence 568888332211122346778 5777766 999999999988753
No 252
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=32.79 E-value=1e+02 Score=30.21 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEeC
Q 006006 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 65 ngeEALelLre~k~~PD-LVIlDI~MP~m---DGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlK 132 (665)
+..+..+.+.+.. .| |.+.|....+. .-+++++++++...+|+| ...+.+.+.++++.||+..++=
T Consensus 31 ~~~~~a~~~~~~G--a~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 31 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CHHHHHHHHHHCC--CCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 4555555555543 55 55567654322 127888999877889998 3456677888999999988764
No 253
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=32.78 E-value=1.5e+02 Score=28.40 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=43.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHHc---CCCceEEEEeCC
Q 006006 30 FPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRER---KGCFDVVLSDVH 88 (665)
Q Consensus 30 fP~girVLIVDDD~~ire~Lk~lL~~~gy--~V~-tAsngeEALelLre~---k~~PDLVIlDI~ 88 (665)
+|.+.+|..+|-++...+..++.++..++ .+. ...++.+.+..+... ...+|+|++|..
T Consensus 92 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~ 156 (237)
T 3c3y_A 92 IPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD 156 (237)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCc
Confidence 45567999999999999999999987765 243 567787776655321 234999999964
No 254
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=32.56 E-value=34 Score=26.15 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=25.1
Q ss_pred HHHHhCCCCCCHHHHHhhhcc-cchhHHHHHHHH
Q 006006 247 ILELMNVPGLTRENVASHLQE-INLQKFRLYLKR 279 (665)
Q Consensus 247 ILeLL~~~~LtI~EVAs~VGY-sD~qYF~k~FKK 279 (665)
|.+++..-|+|..++|..+|. .+.++++++.+.
T Consensus 13 l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 13 LRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 334455578999999999996 677888887764
No 255
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=31.38 E-value=1.1e+02 Score=26.50 Aligned_cols=93 Identities=19% Similarity=0.132 Sum_probs=46.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECC-HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsn-geEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI 110 (665)
.+++|.++|.++...+.+.. .++.+....- -.+.++.+. -...|+||+-.. .+..-+.++..++......+|
T Consensus 28 ~g~~V~~id~~~~~~~~~~~----~~~~~~~gd~~~~~~l~~~~--~~~~d~vi~~~~-~~~~n~~~~~~a~~~~~~~ii 100 (141)
T 3llv_A 28 AGKKVLAVDKSKEKIELLED----EGFDAVIADPTDESFYRSLD--LEGVSAVLITGS-DDEFNLKILKALRSVSDVYAI 100 (141)
T ss_dssp TTCCEEEEESCHHHHHHHHH----TTCEEEECCTTCHHHHHHSC--CTTCSEEEECCS-CHHHHHHHHHHHHHHCCCCEE
T ss_pred CCCeEEEEECCHHHHHHHHH----CCCcEEECCCCCHHHHHhCC--cccCCEEEEecC-CHHHHHHHHHHHHHhCCceEE
Confidence 36788888888765544432 3554433221 123333321 123788887543 111123334444433344555
Q ss_pred -ecCchHHHHHHHHcCCCeEEe
Q 006006 111 -TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLl 131 (665)
...+.++.....+.|++..+.
T Consensus 101 a~~~~~~~~~~l~~~G~~~vi~ 122 (141)
T 3llv_A 101 VRVSSPKKKEEFEEAGANLVVL 122 (141)
T ss_dssp EEESCGGGHHHHHHTTCSEEEE
T ss_pred EEEcChhHHHHHHHcCCCEEEC
Confidence 334455555666788764443
No 256
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=31.15 E-value=1.3e+02 Score=30.08 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=31.4
Q ss_pred HHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEeCC
Q 006006 95 FKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKP 133 (665)
Q Consensus 95 lELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlKP 133 (665)
.++++++++..++||+ +-.+.+.+.+++..||+..+.=.
T Consensus 194 ~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGS 235 (268)
T 1qop_A 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGS 235 (268)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 5788888877788987 44568889898999999998743
No 257
>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}
Probab=31.03 E-value=79 Score=33.38 Aligned_cols=79 Identities=5% Similarity=-0.005 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eEL~ 140 (665)
+.++|+++++... .+++..++--++. +-++.+++|++...+||++ ..+...+.++++.|+.|++ .|+....-|.
T Consensus 227 ~~~~a~~~~~~l~-~~~i~~iE~P~~~-~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 304 (407)
T 2o56_A 227 DTTSAIQFGRMIE-ELGIFYYEEPVMP-LNPAQMKQVADKVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCGGIT 304 (407)
T ss_dssp CHHHHHHHHHHHG-GGCCSCEECSSCS-SSHHHHHHHHHHCCSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHHH-hcCCCEEeCCCCh-hhHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 5678888777643 3566566654443 3366677777667899983 2356778888999977765 7887766665
Q ss_pred HHHHH
Q 006006 141 NIWQH 145 (665)
Q Consensus 141 ~aLq~ 145 (665)
++++-
T Consensus 305 e~~~i 309 (407)
T 2o56_A 305 EVKKI 309 (407)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 258
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=30.78 E-value=66 Score=30.96 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=46.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCE---EE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006006 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN---VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (665)
Q Consensus 30 fP~girVLIVDDD~~ire~Lk~lL~~~gy~---V~-tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~I 101 (665)
+|.+.+|.-||-++...+..++.++..+.. +. ...++.+.+..+.. ..+|+|++|...+. -.++++.+
T Consensus 78 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~--~~fD~V~~d~~~~~--~~~~l~~~ 149 (221)
T 3dr5_A 78 LADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLAN--DSYQLVFGQVSPMD--LKALVDAA 149 (221)
T ss_dssp SCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCT--TCEEEEEECCCTTT--HHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcC--CCcCeEEEcCcHHH--HHHHHHHH
Confidence 455679999999999999999999886653 54 45666665543322 34999999975433 33445444
No 259
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=30.78 E-value=2.3e+02 Score=27.10 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCccEE---ecCchHHHHHHHHc---CCCeEEe---
Q 006006 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRH---GACDYLI--- 131 (665)
Q Consensus 65 ngeEALelLre~k~~PD-LVIlDI~MP~m---DGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~---GA~DYLl--- 131 (665)
+..+.++.+.+.. +| |+++++.-.+. -.+++++++++...+||| .-.+.+.+.++++. ||+.++.
T Consensus 150 ~~~e~~~~~~~~G--~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~a 227 (244)
T 2y88_A 150 DLWDVLERLDSEG--CSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKA 227 (244)
T ss_dssp EHHHHHHHHHHTT--CCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHH
T ss_pred CHHHHHHHHHhCC--CCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHH
Confidence 3455555555543 77 45577654322 247888888877789999 34556788888888 9988765
Q ss_pred ---CCCCHHHHHH
Q 006006 132 ---KPIREEELKN 141 (665)
Q Consensus 132 ---KPv~~eEL~~ 141 (665)
.|....++.+
T Consensus 228 l~~~~~~~~~~~~ 240 (244)
T 2y88_A 228 LYARRFTLPQALA 240 (244)
T ss_dssp HHTTSSCHHHHHH
T ss_pred HHCCCcCHHHHHH
Confidence 3555555443
No 260
>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*
Probab=30.75 E-value=96 Score=32.71 Aligned_cols=75 Identities=9% Similarity=0.083 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-----CCccEEecC--chHHHHHHHHcCCCeEE-eCCCCH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-----MDLPVITDG--RVSAVMRGIRHGACDYL-IKPIRE 136 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~-----~~IPVIa~s--d~e~a~kALe~GA~DYL-lKPv~~ 136 (665)
+.++|+++++... .+++..++--++ +-++.+++|++. ..+||++.. +...+.++++.|+.|++ .|+...
T Consensus 213 ~~~~ai~~~~~l~-~~~i~~iE~P~~--~d~~~~~~l~~~l~~~g~~iPIa~dE~~~~~~~~~~i~~~~~d~v~ik~~~~ 289 (392)
T 3p3b_A 213 NLNLTKEVLAALS-DVNLYWLEEAFH--EDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIWP 289 (392)
T ss_dssp CHHHHHHHHHHTT-TSCEEEEECSSS--CCHHHHHHHHHHHHHHTCCCEEEECCSSCCTTHHHHHHTTSCCEECCBTTTB
T ss_pred CHHHHHHHHHHHH-hcCCCEEecCCc--ccHHHHHHHHHhhccCCCCccEEecCCCCHHHHHHHHHcCCCCEEEeCcccc
Confidence 5689999888764 478888887666 446777777765 679988433 34567888999977765 788764
Q ss_pred HHHHHHH
Q 006006 137 EELKNIW 143 (665)
Q Consensus 137 eEL~~aL 143 (665)
=|.+++
T Consensus 290 -Git~~~ 295 (392)
T 3p3b_A 290 -GFTHWM 295 (392)
T ss_dssp -CHHHHH
T ss_pred -CHHHHH
Confidence 444433
No 261
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=30.56 E-value=2.1e+02 Score=29.63 Aligned_cols=73 Identities=8% Similarity=0.152 Sum_probs=49.0
Q ss_pred CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCC--CCCH----------HHHHHHH----h-ccCCccEEec----CchH
Q 006006 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMP--DMDG----------FKLLEHI----G-LEMDLPVITD----GRVS 116 (665)
Q Consensus 58 y~V~tAsngeEALelLre~k~~PDLVIlDI~MP--~mDG----------lELLe~I----r-~~~~IPVIa~----sd~e 116 (665)
+.+..+.+.++|..+.+.. ||+|++..-+- +.-| .+.++.+ + -.+++.|+.+ .+.+
T Consensus 165 ~Ti~~v~~~eeA~amA~ag---pDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpe 241 (286)
T 2p10_A 165 LTTPYVFSPEDAVAMAKAG---ADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPE 241 (286)
T ss_dssp EECCEECSHHHHHHHHHHT---CSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHH
T ss_pred eEEEecCCHHHHHHHHHcC---CCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHH
Confidence 4456789999999988654 89999875432 3222 3344443 2 2367777733 5788
Q ss_pred HHHHHHHc--CCCeEEeCC
Q 006006 117 AVMRGIRH--GACDYLIKP 133 (665)
Q Consensus 117 ~a~kALe~--GA~DYLlKP 133 (665)
.+..++++ |+++|+.-.
T Consensus 242 Dv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 242 DARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp HHHHHHHHCTTCCEEEESH
T ss_pred HHHHHHhcCCCccEEEeeh
Confidence 89999999 999999865
No 262
>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A
Probab=30.32 E-value=86 Score=33.67 Aligned_cols=102 Identities=11% Similarity=0.058 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHhCCCEEE-E---ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cC
Q 006006 41 DDITCLRILEQMLRRCLYNVT-T---CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DG 113 (665)
Q Consensus 41 DD~~ire~Lk~lL~~~gy~V~-t---AsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~s 113 (665)
++....+.+++.+.. .+.+. - .-+.++|+++++... ..++..++--+|..| ++.+++|++...+||++ ..
T Consensus 212 ~d~e~v~avR~a~G~-d~~l~vDaN~~~~~~~A~~~~~~L~-~~~i~~iEqP~~~~d-~~~~~~l~~~~~iPIa~dE~~~ 288 (425)
T 3vcn_A 212 SVPKLFERAREVLGW-DVHLLHDVHHRLTPIEAARLGKDLE-PYRLFWLEDSVPAEN-QAGFRLIRQHTTTPLAVGEIFA 288 (425)
T ss_dssp TTHHHHHHHHHHHCS-SSEEEEECTTCCCHHHHHHHHHHHG-GGCCSEEECCSCCSS-TTHHHHHHHHCCSCEEECTTCC
T ss_pred HHHHHHHHHHHHcCC-CCEEEEECCCCCCHHHHHHHHHHHH-hcCCCEEECCCChhh-HHHHHHHHhcCCCCEEeCCCcC
Confidence 344445555555522 23333 2 235688988877653 356667775555322 34456676667899983 33
Q ss_pred chHHHHHHHHcCCCeEE-eCCCCHHHHHHHHHH
Q 006006 114 RVSAVMRGIRHGACDYL-IKPIREEELKNIWQH 145 (665)
Q Consensus 114 d~e~a~kALe~GA~DYL-lKPv~~eEL~~aLq~ 145 (665)
+...+.++++.|+.|++ .|+....=|..+++-
T Consensus 289 ~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~i 321 (425)
T 3vcn_A 289 HVWDAKQLIEEQLIDYLRATVLHAGGITNLKKI 321 (425)
T ss_dssp SGGGTHHHHHTTCCSEECCCTTTTTHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCeEecChhhcCCHHHHHHH
Confidence 56677888999977776 778776556555443
No 263
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=30.19 E-value=46 Score=33.79 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=44.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
.|++|+-.. .+.-|+.+++.+. ..+|||+.+.. ...+.++.|-.+++..|-+.++|.+++..++..
T Consensus 285 adv~v~ps~-~e~~~~~~~EAma--~G~PvI~~~~~-~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~ 350 (394)
T 2jjm_A 285 SDLMLLLSE-KESFGLVLLEAMA--CGVPCIGTRVG-GIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKD 350 (394)
T ss_dssp CSEEEECCS-CCSCCHHHHHHHH--TTCCEEEECCT-TSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHC
T ss_pred CCEEEeccc-cCCCchHHHHHHh--cCCCEEEecCC-ChHHHhhcCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 577776443 2334566777764 46888843321 223345567789999999999999999988753
No 264
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=29.91 E-value=29 Score=32.88 Aligned_cols=50 Identities=8% Similarity=0.096 Sum_probs=33.9
Q ss_pred cE-EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEE
Q 006006 34 LR-VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (665)
Q Consensus 34 ir-VLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIl 85 (665)
|| |+|||........+.++|++.+..+..+...+..++.+.... +|.||+
T Consensus 1 m~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~--~dglil 51 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERID--PDRLII 51 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHC--CSEEEE
T ss_pred CCEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCC--CCEEEE
Confidence 46 999997766666778888888888776655432233344334 888877
No 265
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Probab=29.88 E-value=95 Score=33.36 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC--CccEEecC----chHHHHHHHHcCCCeE-EeCCCCHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM--DLPVITDG----RVSAVMRGIRHGACDY-LIKPIREE 137 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~--~IPVIa~s----d~e~a~kALe~GA~DY-LlKPv~~e 137 (665)
+.++|++.+++....+++..+.-=++..| ++-+++|++.. .+||++.+ +.....++++.++.++ .+|+....
T Consensus 268 t~~~ai~~~~~L~~~~~i~~iEePl~~~d-~~~~~~l~~~~~~~ipIa~dEl~~~~~~~~~~~i~~~a~d~i~ik~~~~G 346 (431)
T 2fym_A 268 TSEEFTHFLEELTKQYPIVSIEDGLDESD-WDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIG 346 (431)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEESCSCTTC-HHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECGGGTC
T ss_pred CHHHHHHHHHHHHHhCCceEEECCCCccc-HHHHHHHHHHhCCCCeEEeCCcccCCHHHHHHHHHhCCCCEEEECccccC
Confidence 67888888776532268888877666544 44455555433 68888433 5567788899887776 57887655
Q ss_pred HHHHHHH
Q 006006 138 ELKNIWQ 144 (665)
Q Consensus 138 EL~~aLq 144 (665)
-|.++++
T Consensus 347 Gite~~~ 353 (431)
T 2fym_A 347 SLTETLA 353 (431)
T ss_dssp SHHHHHH
T ss_pred CHHHHHH
Confidence 5554443
No 266
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=29.63 E-value=1.7e+02 Score=27.27 Aligned_cols=71 Identities=23% Similarity=0.248 Sum_probs=47.3
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHHcC--CCceEEEEeCCCCCCCHHHHHHHH
Q 006006 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRERK--GCFDVVLSDVHMPDMDGFKLLEHI 101 (665)
Q Consensus 29 ~fP~girVLIVDDD~~ire~Lk~lL~~~gy--~V~-tAsngeEALelLre~k--~~PDLVIlDI~MP~mDGlELLe~I 101 (665)
.+|.+.+|..+|-++...+..++.+...+. .+. ...+..+.+..+.... ..+|+|++|.. ..+-.++++.+
T Consensus 90 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~ 165 (229)
T 2avd_A 90 ALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERC 165 (229)
T ss_dssp TSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHH
Confidence 345567999999999999999998887653 343 5677777666554311 24999999864 22333444444
No 267
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=29.27 E-value=2e+02 Score=27.63 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHcCCCceEE-EEeCCCCCC---CHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEeC
Q 006006 65 QAAVALDILRERKGCFDVV-LSDVHMPDM---DGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 65 ngeEALelLre~k~~PDLV-IlDI~MP~m---DGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlK 132 (665)
+..+..+.+.+.. .|.+ +.|...... ..+++++.+++...+|++ ...+.+.+.++++.||+..++=
T Consensus 31 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 31 DPVELGKFYSEIG--IDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CHHHHHHHHHHTT--CCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHHcC--CCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4445555555543 6644 445432221 235677888777789998 3466788889999999887763
No 268
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=29.23 E-value=1.2e+02 Score=30.87 Aligned_cols=86 Identities=10% Similarity=-0.008 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCCCEE-EEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCC---------HHHHHHHHhccCCccEE--
Q 006006 45 CLRILEQMLRRCLYNV-TTCS--QAAVALDILRERKGCFDVVLSDVHMPDMD---------GFKLLEHIGLEMDLPVI-- 110 (665)
Q Consensus 45 ire~Lk~lL~~~gy~V-~tAs--ngeEALelLre~k~~PDLVIlDI~MP~mD---------GlELLe~Ir~~~~IPVI-- 110 (665)
....+...++..+..+ ..+. +..+-++.+.+.. .+.|-+= ...+.. -.++++++|+..++|++
T Consensus 138 e~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~--~gfiY~v-s~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vG 214 (271)
T 3nav_A 138 ESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLG--KGYTYLL-SRAGVTGAETKANMPVHALLERLQQFDAPPALLG 214 (271)
T ss_dssp GCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHC--CSCEEEC-CCC--------CCHHHHHHHHHHHHTTCCCEEEC
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHC--CCeEEEE-eccCCCCcccCCchhHHHHHHHHHHhcCCCEEEE
Confidence 3445666666666553 2332 2345555555554 4545441 122222 24677888877789988
Q ss_pred -ecCchHHHHHHHHcCCCeEEeCC
Q 006006 111 -TDGRVSAVMRGIRHGACDYLIKP 133 (665)
Q Consensus 111 -a~sd~e~a~kALe~GA~DYLlKP 133 (665)
.-.+.+.+.+++..||++.+.-.
T Consensus 215 fGIst~e~~~~~~~~gADgvIVGS 238 (271)
T 3nav_A 215 FGISEPAQVKQAIEAGAAGAISGS 238 (271)
T ss_dssp SSCCSHHHHHHHHHTTCSEEEESH
T ss_pred CCCCCHHHHHHHHHcCCCEEEECH
Confidence 45678888889999999999865
No 269
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=29.14 E-value=2.2e+02 Score=29.92 Aligned_cols=63 Identities=22% Similarity=0.194 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCCH-HHHHHHHhccCCccEE--ecCchHHHHHHHHcCCCeEEe
Q 006006 67 AVALDILRERKGCFDVVLSDVHMPDMDG-FKLLEHIGLEMDLPVI--TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 67 eEALelLre~k~~PDLVIlDI~MP~mDG-lELLe~Ir~~~~IPVI--a~sd~e~a~kALe~GA~DYLl 131 (665)
.+.++.+.+.. +|+|.+|..-..... ++.++++++...+||| ...+.+.+.++.+.||+....
T Consensus 107 ~e~a~~l~eaG--ad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVEAG--VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHHTT--CSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--cCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHcCcCEEEE
Confidence 45555554444 899999865433222 4677777765578888 456788899999999988776
No 270
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=29.01 E-value=1.9e+02 Score=27.74 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCccEE---ecCchHHHHHHHHc---CCCeEEe---
Q 006006 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRH---GACDYLI--- 131 (665)
Q Consensus 65 ngeEALelLre~k~~PD-LVIlDI~MP~m---DGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~---GA~DYLl--- 131 (665)
+..+..+.+.+.. +| |+++++.-.++ -.+++++++++...+||| .-.+.+.+.++++. ||+.++.
T Consensus 147 ~~~e~~~~~~~~G--~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~a 224 (244)
T 1vzw_A 147 DLYETLDRLNKEG--CARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKA 224 (244)
T ss_dssp BHHHHHHHHHHTT--CCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHH
T ss_pred CHHHHHHHHHhCC--CCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHH
Confidence 4556555555543 77 55677642221 137888999877789999 34566888889998 9998765
Q ss_pred ---CCCCHHHHHHH
Q 006006 132 ---KPIREEELKNI 142 (665)
Q Consensus 132 ---KPv~~eEL~~a 142 (665)
.|++..++.+.
T Consensus 225 l~~~~~~~~~~~~~ 238 (244)
T 1vzw_A 225 LYAKAFTLEEALEA 238 (244)
T ss_dssp HHTTSSCHHHHHHH
T ss_pred HHcCCCCHHHHHHH
Confidence 35555554443
No 271
>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A
Probab=28.99 E-value=1e+02 Score=32.75 Aligned_cols=78 Identities=9% Similarity=0.028 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eEL~ 140 (665)
+.++|+++++... ..++..++--++..| ++.+++|++...+||++ ..+...+.++++.|+.|++ .|+....=|.
T Consensus 218 ~~~~A~~~~~~L~-~~~i~~iEeP~~~~d-~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit 295 (394)
T 3mkc_A 218 DWYEVARLLNSIE-DLELYFAEATLQHDD-LSGHAKLVENTRSRICGAEMSTTRFEAEEWITKGKVHLLQSDYNRCGGLT 295 (394)
T ss_dssp CHHHHHHHHHHTG-GGCCSEEESCSCTTC-HHHHHHHHHHCSSCBEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHhh-hcCCeEEECCCCchh-HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCeEecCccccCCHH
Confidence 6678888877653 356666665555333 56667777667899883 3355667788998877765 7787765555
Q ss_pred HHHH
Q 006006 141 NIWQ 144 (665)
Q Consensus 141 ~aLq 144 (665)
++++
T Consensus 296 ~~~~ 299 (394)
T 3mkc_A 296 ELRR 299 (394)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 272
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=28.81 E-value=4.3e+02 Score=26.79 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=55.5
Q ss_pred HHHHHHhCCCEEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCcc-EE--ecCchHHHHHH
Q 006006 49 LEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLP-VI--TDGRVSAVMRG 121 (665)
Q Consensus 49 Lk~lL~~~gy~V~--tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir--~~~~IP-VI--a~sd~e~a~kA 121 (665)
+++.|..-...+. .-.+..+.++.+.... +|.|++|..=...+--.+...++ .....+ +| ...+...+.++
T Consensus 30 ~k~~l~~G~~~~gl~~~~~~p~~~e~a~~~G--aD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~~ 107 (287)
T 2v5j_A 30 FKAALKAGRPQIGLWLGLSSSYSAELLAGAG--FDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQL 107 (287)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHTSC--CSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHHH
T ss_pred HHHHHHCCCcEEEEEEECCCHHHHHHHHhCC--CCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHH
Confidence 5566655322343 3334455566666554 99999998554444434444443 122344 44 44566678889
Q ss_pred HHcCCCeEEe-CCCCHHHHHHHHHH
Q 006006 122 IRHGACDYLI-KPIREEELKNIWQH 145 (665)
Q Consensus 122 Le~GA~DYLl-KPv~~eEL~~aLq~ 145 (665)
++.|++..++ |--+.++++.+++.
T Consensus 108 ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 108 LDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred HhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 9999987544 33568887666554
No 273
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=28.73 E-value=2e+02 Score=30.46 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhcc-CCccEE--ecCchHHHHHHHHcCCCeEEe
Q 006006 67 AVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVI--TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 67 eEALelLre~k~~PDLVIlDI~MP~-mDGlELLe~Ir~~-~~IPVI--a~sd~e~a~kALe~GA~DYLl 131 (665)
.+.++.+.+.. +|+|.+|..-.. ..-++.++++++. ++++|| .-.+.+.++++.++||+....
T Consensus 110 ~~~~~~lieaG--vd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 110 EERVKALVEAG--VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp HHHHHHHHHTT--CSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhCC--CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEE
Confidence 45555555554 999999864322 1235667777654 478887 356788899999999988877
No 274
>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}
Probab=28.35 E-value=89 Score=32.91 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eEL~ 140 (665)
+.++|++.++... .+++..++--++. +-++.++++++...+||++ ..+...+.++++.|+.|++ .|+....-+.
T Consensus 206 ~~~~a~~~~~~l~-~~~i~~iEqP~~~-~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 283 (391)
T 2qgy_A 206 DLDQTKSFLKEVS-SFNPYWIEEPVDG-ENISLLTEIKNTFNMKVVTGEKQSGLVHFRELISRNAADIFNPDISGMGGLI 283 (391)
T ss_dssp CHHHHHHHHHHHG-GGCCSEEECSSCT-TCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTSSCHH
T ss_pred CHHHHHHHHHHHH-hcCCCeEeCCCCh-hhHHHHHHHHhhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcchhCCHH
Confidence 5678888777653 2555566654553 3366777777667899983 3456778889999977765 7886544444
Q ss_pred H
Q 006006 141 N 141 (665)
Q Consensus 141 ~ 141 (665)
+
T Consensus 284 ~ 284 (391)
T 2qgy_A 284 D 284 (391)
T ss_dssp H
T ss_pred H
Confidence 3
No 275
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}
Probab=28.11 E-value=84 Score=33.29 Aligned_cols=78 Identities=12% Similarity=0.108 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eEL~ 140 (665)
+.++|+++++... .+++..++--++.. -++.+++|++...+||++ ..+...+.++++.|+.|++ .|+....-|.
T Consensus 222 ~~~~a~~~~~~l~-~~~i~~iEeP~~~~-d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 299 (410)
T 2qq6_A 222 DIPSSIRFARAME-PFGLLWLEEPTPPE-NLDALAEVRRSTSTPICAGENVYTRFDFRELFAKRAVDYVMPDVAKCGGLA 299 (410)
T ss_dssp CHHHHHHHHHHHG-GGCCSEEECCSCTT-CHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBHHHHTHHH
T ss_pred CHHHHHHHHHHHh-hcCCCeEECCCChh-hHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 5678888776543 35666666544443 367777887777899983 3366778889999987776 6675544454
Q ss_pred HHHH
Q 006006 141 NIWQ 144 (665)
Q Consensus 141 ~aLq 144 (665)
++++
T Consensus 300 e~~~ 303 (410)
T 2qq6_A 300 EAKR 303 (410)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 276
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=28.07 E-value=3e+02 Score=24.01 Aligned_cols=72 Identities=22% Similarity=0.218 Sum_probs=46.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHc--CCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRER--KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~--k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI 110 (665)
.|||.++-| +....++ +-.|.++..+.+.+++.+.+++. ...+.||+++-++-.. --+.+++++.....|+|
T Consensus 3 ~mkiaVIgD-~dtv~GF----rLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~~-i~~~i~~~~~~~~~P~I 76 (109)
T 2d00_A 3 PVRMAVIAD-PETAQGF----RLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLPD-PERAVERLMRGRDLPVL 76 (109)
T ss_dssp CCCEEEEEC-HHHHHHH----HHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCSC-HHHHHHHHTTCCCCCEE
T ss_pred ccEEEEEeC-HHHHHHH----HHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHh-hHHHHHHHHhCCCCeEE
Confidence 478999999 4444333 22377888888888776655532 1248999999877653 33455666545567766
No 277
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=28.04 E-value=3.2e+02 Score=29.51 Aligned_cols=96 Identities=16% Similarity=0.227 Sum_probs=57.2
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhC-CCEE--EEECCHHHHHHHHHHcCCCceEEEEeCCCC-----------CCCH
Q 006006 33 GLRVLVVDD----DITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMDG 94 (665)
Q Consensus 33 girVLIVDD----D~~ire~Lk~lL~~~-gy~V--~tAsngeEALelLre~k~~PDLVIlDI~MP-----------~mDG 94 (665)
+..+++++- .....+.++.+-+.. +..| ..+.+.++|..+.+ .. +|.|.+...-. +.-.
T Consensus 249 Gvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~-~G--~d~I~v~~~~G~~~~~~~~~~~g~p~ 325 (494)
T 1vrd_A 249 GVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIK-AG--ADAVKVGVGPGSICTTRVVAGVGVPQ 325 (494)
T ss_dssp TCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHH-TT--CSEEEECSSCSTTCHHHHHHCCCCCH
T ss_pred CCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHH-cC--CCEEEEcCCCCccccccccCCCCccH
Confidence 445555532 234555566555554 3433 45778888866654 33 89888844211 1223
Q ss_pred HHHHHHHh---ccCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 95 FKLLEHIG---LEMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 95 lELLe~Ir---~~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
++++..+. ....+||| .-.+...+.+|+.+||+....
T Consensus 326 ~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 326 LTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 44444443 23579999 345778899999999987654
No 278
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=27.99 E-value=1.3e+02 Score=29.47 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCH-------HHHHHHHhccC-CccEE--ecCch
Q 006006 46 LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG-------FKLLEHIGLEM-DLPVI--TDGRV 115 (665)
Q Consensus 46 re~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDG-------lELLe~Ir~~~-~IPVI--a~sd~ 115 (665)
.....+.++..+..+..+-+...-++.++.....+|.|++.-.-|+.+| ++-++++|+.. ++++. .--+.
T Consensus 101 ~~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~ 180 (228)
T 3ovp_A 101 PGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP 180 (228)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTSCGGGTGGGGGGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEEEEESSCST
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCEEEeCCcCH
Q ss_pred HHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHHHhhhcccccc
Q 006006 116 SAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRKRWNENKEHE 158 (665)
Q Consensus 116 e~a~kALe~GA~DYLl-----KPv~~eEL~~aLq~Vlrk~~~~~k~~~ 158 (665)
+.+.++.++||+.++. +.-++.+-.+.++..+...........
T Consensus 181 ~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~l~~~~~~~~~~~~~~~ 228 (228)
T 3ovp_A 181 DTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR 228 (228)
T ss_dssp TTHHHHHHHTCCEEEESHHHHTCSCHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHHHHHhhccccC
No 279
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=27.96 E-value=1.5e+02 Score=28.76 Aligned_cols=70 Identities=13% Similarity=0.246 Sum_probs=47.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHHc---CCCceEEEEeCCCCCCCHHHHHHHH
Q 006006 30 FPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRER---KGCFDVVLSDVHMPDMDGFKLLEHI 101 (665)
Q Consensus 30 fP~girVLIVDDD~~ire~Lk~lL~~~gy--~V~-tAsngeEALelLre~---k~~PDLVIlDI~MP~mDGlELLe~I 101 (665)
+|.+.+|..||-++...+..++.+...+. .|. ...++.+.+..+... ...+|+|++|.... +-..+++.+
T Consensus 101 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~--~~~~~l~~~ 176 (247)
T 1sui_A 101 IPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD--NYLNYHKRL 176 (247)
T ss_dssp SCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCST--THHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchH--HHHHHHHHH
Confidence 45567999999999999999999887665 343 567787776655311 23499999996532 334444444
No 280
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=27.80 E-value=4.6e+02 Score=26.05 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=55.3
Q ss_pred HHHHHHhCC--CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCcc-EE--ecCchHHHHHH
Q 006006 49 LEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLP-VI--TDGRVSAVMRG 121 (665)
Q Consensus 49 Lk~lL~~~g--y~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~--~~~IP-VI--a~sd~e~a~kA 121 (665)
+++.|..-. +.+.......+.++.+.... +|.|++|..=...+--.+...++. ....+ +| ...+...+.++
T Consensus 9 ~k~~l~~g~~~~g~~~~~~~p~~~e~a~~~G--aD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~~ 86 (267)
T 2vws_A 9 FKERLRKGEVQIGLWLSSTTAYMAEIAATSG--YDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQV 86 (267)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHTTC--CSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEeCCCHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Confidence 555565422 23333334455566666554 999999985544444444444432 22333 44 44567778889
Q ss_pred HHcCCCeEEe-CCCCHHHHHHHHHH
Q 006006 122 IRHGACDYLI-KPIREEELKNIWQH 145 (665)
Q Consensus 122 Le~GA~DYLl-KPv~~eEL~~aLq~ 145 (665)
++.|++..++ |--+.++++.+++.
T Consensus 87 l~~g~~~I~~P~V~s~ee~~~~~~~ 111 (267)
T 2vws_A 87 LDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_dssp HHTTCCEEEECCCCSHHHHHHHHHH
T ss_pred HHhCCCEEEeCCCCCHHHHHHHHHH
Confidence 9999987543 44578887666554
No 281
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=27.56 E-value=3.5e+02 Score=27.26 Aligned_cols=108 Identities=14% Similarity=0.121 Sum_probs=65.3
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 006006 30 FPAGLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (665)
Q Consensus 30 fP~girVLIVDDD~~ire~Lk~lL~~~-gy~V~-tAs-ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~ 106 (665)
+...|||-||--=..-+..+...+... ++++. .|. +.+.|-+..++.. ..-+..|+ -++++ ....+
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g--~~~~y~d~-------~ell~--~~~iD 88 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFS--VPHAFGSY-------EEMLA--SDVID 88 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHT--CSEEESSH-------HHHHH--CSSCS
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC--CCeeeCCH-------HHHhc--CCCCC
Confidence 345689999998877666555555543 56665 343 3444545555443 22233332 22322 12356
Q ss_pred ccEE---ecCchHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 006006 107 LPVI---TDGRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 148 (665)
Q Consensus 107 IPVI---a~sd~e~a~kALe~GA~DYLlKPv--~~eEL~~aLq~Vlr 148 (665)
+.+| .....+.+.+|+++|-.=|+-||+ +.+|..+.++.+-+
T Consensus 89 aV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 135 (350)
T 4had_A 89 AVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDR 135 (350)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHH
T ss_pred EEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHH
Confidence 6666 234567889999999999999996 57777777665533
No 282
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=27.42 E-value=89 Score=30.29 Aligned_cols=71 Identities=23% Similarity=0.317 Sum_probs=47.5
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006006 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (665)
Q Consensus 28 d~fP~girVLIVDDD~~ire~Lk~lL~~~gy~--V~-tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~I 101 (665)
..+|.+.+|..||-++...+..++.+...+.. |. ...++.+.+..+.. ...+|+|++|...+ +-..+++.+
T Consensus 83 ~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~-~~~fD~V~~d~~~~--~~~~~l~~~ 156 (248)
T 3tfw_A 83 RELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGE-CPAFDLIFIDADKP--NNPHYLRWA 156 (248)
T ss_dssp TTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCS-CCCCSEEEECSCGG--GHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCC-CCCeEEEEECCchH--HHHHHHHHH
Confidence 34565789999999999999999998876542 43 56777665554321 12499999987432 223445554
No 283
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=27.38 E-value=1e+02 Score=32.11 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=39.7
Q ss_pred HHHHHHhcc-CCccEE-ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006006 96 KLLEHIGLE-MDLPVI-TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146 (665)
Q Consensus 96 ELLe~Ir~~-~~IPVI-a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~V 146 (665)
+.++++|+. +..+|. -.++.+.+.+|++.||+-.++..+++++++++++.+
T Consensus 196 ~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~ 248 (300)
T 3l0g_A 196 LAIQRLRKNLKNEYIAIECDNISQVEESLSNNVDMILLDNMSISEIKKAVDIV 248 (300)
T ss_dssp HHHHHHHHHSSSCCEEEEESSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEECCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 344555432 556766 456689999999999999999999999999988764
No 284
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=27.27 E-value=2.8e+02 Score=28.15 Aligned_cols=82 Identities=12% Similarity=0.059 Sum_probs=52.1
Q ss_pred HHHHHHHHHhCCCEE-EEECCHHHHHHHHHHcCCCceEEEEeCCCC---CCCHHHHHHHHhc-c-CCccEE---ecCchH
Q 006006 46 LRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMP---DMDGFKLLEHIGL-E-MDLPVI---TDGRVS 116 (665)
Q Consensus 46 re~Lk~lL~~~gy~V-~tAsngeEALelLre~k~~PDLVIlDI~MP---~mDGlELLe~Ir~-~-~~IPVI---a~sd~e 116 (665)
.+.+.......+..+ ..+.+.+|+...+. . .+|+|=+.-+-. ..| ++...++.. . .++++| +-...+
T Consensus 158 l~~l~~~a~~lGl~~lvevh~~eEl~~A~~-~--ga~iIGinnr~l~t~~~d-l~~~~~L~~~ip~~~~vIaesGI~t~e 233 (272)
T 3tsm_A 158 AKELEDTAFALGMDALIEVHDEAEMERALK-L--SSRLLGVNNRNLRSFEVN-LAVSERLAKMAPSDRLLVGESGIFTHE 233 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHTT-S--CCSEEEEECBCTTTCCBC-THHHHHHHHHSCTTSEEEEESSCCSHH
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHh-c--CCCEEEECCCCCccCCCC-hHHHHHHHHhCCCCCcEEEECCCCCHH
Confidence 344444455567765 47888888866653 2 389886663221 122 344444432 2 357888 456788
Q ss_pred HHHHHHHcCCCeEEe
Q 006006 117 AVMRGIRHGACDYLI 131 (665)
Q Consensus 117 ~a~kALe~GA~DYLl 131 (665)
.+.++.++||+++|.
T Consensus 234 dv~~l~~~Ga~gvLV 248 (272)
T 3tsm_A 234 DCLRLEKSGIGTFLI 248 (272)
T ss_dssp HHHHHHTTTCCEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 899999999999987
No 285
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=26.79 E-value=3e+02 Score=30.54 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCCCCC-C--HHHHHHHHhccCCccEE---ecCchHHHHHHHH-cCCCeEEe------C
Q 006006 67 AVALDILRERKGCFD-VVLSDVHMPDM-D--GFKLLEHIGLEMDLPVI---TDGRVSAVMRGIR-HGACDYLI------K 132 (665)
Q Consensus 67 eEALelLre~k~~PD-LVIlDI~MP~m-D--GlELLe~Ir~~~~IPVI---a~sd~e~a~kALe-~GA~DYLl------K 132 (665)
.+..+.+++.. .+ |+++|+.-.++ . -+++++++++...+||| ...+.+.+.++++ .||++.+. .
T Consensus 455 ~e~a~~~~~~G--a~~il~t~~~~dG~~~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~ 532 (555)
T 1jvn_A 455 WELTRACEALG--AGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRG 532 (555)
T ss_dssp HHHHHHHHHTT--CCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTT
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCCCCCCCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcC
Confidence 34444454443 55 44556533222 2 27899999877889999 3457788888887 79988765 3
Q ss_pred CCCHHHHHHHH
Q 006006 133 PIREEELKNIW 143 (665)
Q Consensus 133 Pv~~eEL~~aL 143 (665)
++...++++.+
T Consensus 533 ~~~~~e~~~~l 543 (555)
T 1jvn_A 533 EFTVNDVKEYL 543 (555)
T ss_dssp SCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 77777777654
No 286
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=26.73 E-value=58 Score=33.20 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=36.3
Q ss_pred HHHHHHHhcc-CCccEE--ec-------CchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHH
Q 006006 95 FKLLEHIGLE-MDLPVI--TD-------GRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 145 (665)
Q Consensus 95 lELLe~Ir~~-~~IPVI--a~-------sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~ 145 (665)
+++++++|+. .++|+| .| .-...+.++.+.|+++.|.--+..+|.......
T Consensus 85 ~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~ 145 (271)
T 3nav_A 85 FELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAA 145 (271)
T ss_dssp HHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Confidence 5677777765 788987 33 334467889999999999977777775544433
No 287
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=26.44 E-value=94 Score=31.06 Aligned_cols=93 Identities=13% Similarity=0.211 Sum_probs=49.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEEC----CHHHHHHHHHHcCCCceEEEEe-------------------CCCCCC
Q 006006 36 VLVVDDDITCLRILEQMLRRCLYNVTTCS----QAAVALDILRERKGCFDVVLSD-------------------VHMPDM 92 (665)
Q Consensus 36 VLIVDDD~~ire~Lk~lL~~~gy~V~tAs----ngeEALelLre~k~~PDLVIlD-------------------I~MP~m 92 (665)
|+-.+|-.......+.+++. |..+..+. ++.++++.+++.- +++++-- +..|+.
T Consensus 39 Vir~~~~~~a~~~a~al~~g-Gi~~iEvt~~t~~a~e~I~~l~~~~--~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~~ 115 (232)
T 4e38_A 39 VIAIDNAEDIIPLGKVLAEN-GLPAAEITFRSDAAVEAIRLLRQAQ--PEMLIGAGTILNGEQALAAKEAGATFVVSPGF 115 (232)
T ss_dssp EECCSSGGGHHHHHHHHHHT-TCCEEEEETTSTTHHHHHHHHHHHC--TTCEEEEECCCSHHHHHHHHHHTCSEEECSSC
T ss_pred EEEcCCHHHHHHHHHHHHHC-CCCEEEEeCCCCCHHHHHHHHHHhC--CCCEEeECCcCCHHHHHHHHHcCCCEEEeCCC
Confidence 34444444444444444444 55544332 4455555555443 4443311 123444
Q ss_pred CHHHHHHHHhccCCccEE-ecCchHHHHHHHHcCCCeEEeCC
Q 006006 93 DGFKLLEHIGLEMDLPVI-TDGRVSAVMRGIRHGACDYLIKP 133 (665)
Q Consensus 93 DGlELLe~Ir~~~~IPVI-a~sd~e~a~kALe~GA~DYLlKP 133 (665)
| .++++..++ ..+|++ .-.+.+.+.+|+++|++-.=.=|
T Consensus 116 ~-~~vi~~~~~-~gi~~ipGv~TptEi~~A~~~Gad~vK~FP 155 (232)
T 4e38_A 116 N-PNTVRACQE-IGIDIVPGVNNPSTVEAALEMGLTTLKFFP 155 (232)
T ss_dssp C-HHHHHHHHH-HTCEEECEECSHHHHHHHHHTTCCEEEECS
T ss_pred C-HHHHHHHHH-cCCCEEcCCCCHHHHHHHHHcCCCEEEECc
Confidence 4 345554433 367777 55688899999999987554445
No 288
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=26.42 E-value=5.4e+02 Score=26.36 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCCC--C------------HHHHHHHHhc
Q 006006 41 DDITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDM--D------------GFKLLEHIGL 103 (665)
Q Consensus 41 DD~~ire~Lk~lL~~~-gy~V~--tAsngeEALelLre~k~~PDLVIlDI~MP~m--D------------GlELLe~Ir~ 103 (665)
+.....+.++.+-+.. +..|. .+.+.++|..+++.. .|.|++-.+ ++. + -++++.+++.
T Consensus 132 ~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aG---ad~Ivvs~h-gG~~~~~~~~~~~g~~g~~~~~l~~v~~ 207 (336)
T 1ypf_A 132 HSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAG---ADATKVGIG-PGKVCITKIKTGFGTGGWQLAALRWCAK 207 (336)
T ss_dssp CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECSS-CSTTCHHHHHHSCSSTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcC---CCEEEEecC-CCceeecccccCcCCchhHHHHHHHHHH
Confidence 4556667777766654 33332 367888888777653 798888432 221 1 3677777766
Q ss_pred cCCccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 104 EMDLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 104 ~~~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
..++||| .-.+...+.+|+.+||+....
T Consensus 208 ~~~ipVIa~GGI~~g~Dv~kalalGAdaV~i 238 (336)
T 1ypf_A 208 AASKPIIADGGIRTNGDVAKSIRFGATMVMI 238 (336)
T ss_dssp TCSSCEEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred HcCCcEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 6689999 346778888999999988654
No 289
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=26.29 E-value=49 Score=22.89 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=22.0
Q ss_pred HHHHhCCCCCCHHHHHhhhcccchhHHHHHHHHH
Q 006006 247 ILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 280 (665)
Q Consensus 247 ILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK~ 280 (665)
|+.++ ..|++..+||..+|.+. .-+.++++++
T Consensus 14 i~~~~-~~g~s~~~IA~~lgis~-~Tv~~~~~~~ 45 (51)
T 1tc3_C 14 LDVMK-LLNVSLHEMSRKISRSR-HCIRVYLKDP 45 (51)
T ss_dssp HHHHH-HTTCCHHHHHHHHTCCH-HHHHHHHHCS
T ss_pred HHHHH-HcCCCHHHHHHHHCcCH-HHHHHHHhhH
Confidence 44444 46899999999999754 4455555554
No 290
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=26.06 E-value=92 Score=31.31 Aligned_cols=80 Identities=14% Similarity=0.073 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCC----CCC-CHHHHHHHHhccC-CccEE---e-cCchHHHHHHHHcCCCeEEeCCC
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHM----PDM-DGFKLLEHIGLEM-DLPVI---T-DGRVSAVMRGIRHGACDYLIKPI 134 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~M----P~m-DGlELLe~Ir~~~-~IPVI---a-~sd~e~a~kALe~GA~DYLlKPv 134 (665)
+-.++++.+.+.. .|.+=+|++- |.+ -|.++++.||+.. ++|+. . .+-..++..+.++||+....=..
T Consensus 41 ~L~~~i~~l~~~G--~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~E 118 (246)
T 3inp_A 41 RLGDDVKAVLAAG--ADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPE 118 (246)
T ss_dssp GHHHHHHHHHHTT--CCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGG
T ss_pred hHHHHHHHHHHcC--CCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccc
Confidence 4567888887654 6777777633 322 3889999998664 67765 2 33345777888999987766554
Q ss_pred CHHHHHHHHHHH
Q 006006 135 REEELKNIWQHV 146 (665)
Q Consensus 135 ~~eEL~~aLq~V 146 (665)
..+++.++++.+
T Consensus 119 a~~~~~~~i~~i 130 (246)
T 3inp_A 119 ASEHIDRSLQLI 130 (246)
T ss_dssp GCSCHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 445666666655
No 291
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=25.92 E-value=2e+02 Score=27.53 Aligned_cols=70 Identities=17% Similarity=0.095 Sum_probs=47.1
Q ss_pred CCEEE-EECCHHHHHHHHHHcCCCceEE---EEeCCCCC-----CCHHHHHHHHhccCCccEE---ecCchHHHHHHHHc
Q 006006 57 LYNVT-TCSQAAVALDILRERKGCFDVV---LSDVHMPD-----MDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRH 124 (665)
Q Consensus 57 gy~V~-tAsngeEALelLre~k~~PDLV---IlDI~MP~-----mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~ 124 (665)
+..+. .+.+.+++....+.. .|.| +..+. ++ ...++++++++.. ++||+ .-.+.+.+.++++.
T Consensus 133 ~~~v~~~~~t~~ea~~a~~~G---ad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~~-~ipvia~GGI~s~~~~~~~~~~ 207 (234)
T 1yxy_A 133 NQLLMADISTFDEGLVAHQAG---IDFVGTTLSGYT-PYSRQEAGPDVALIEALCKA-GIAVIAEGKIHSPEEAKKINDL 207 (234)
T ss_dssp TCEEEEECSSHHHHHHHHHTT---CSEEECTTTTSS-TTSCCSSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHTT
T ss_pred CCeEEEeCCCHHHHHHHHHcC---CCEEeeeccccC-CCCcCCCCCCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHC
Confidence 34443 667788877766532 7887 33221 21 1246888888766 89998 34468889999999
Q ss_pred CCCeEEe
Q 006006 125 GACDYLI 131 (665)
Q Consensus 125 GA~DYLl 131 (665)
||+.++.
T Consensus 208 Gad~v~v 214 (234)
T 1yxy_A 208 GVAGIVV 214 (234)
T ss_dssp CCSEEEE
T ss_pred CCCEEEE
Confidence 9998865
No 292
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=25.91 E-value=38 Score=28.53 Aligned_cols=33 Identities=9% Similarity=0.151 Sum_probs=26.1
Q ss_pred HHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHH
Q 006006 245 KRILELMNVPGLTRENVASHLQEINLQKFRLYLK 278 (665)
Q Consensus 245 KkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FK 278 (665)
++|.+++..-++|..++|..+|.+. ++++++.+
T Consensus 27 ~rLk~lR~~~glTq~eLA~~~GiS~-~tis~iE~ 59 (88)
T 3t76_A 27 NKLWKLLIDRDMKKGELREAVGVSK-STFAKLGK 59 (88)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCH-HHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCH-HHHHHHHc
Confidence 5677888889999999999999744 56666654
No 293
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=25.87 E-value=1.2e+02 Score=33.70 Aligned_cols=37 Identities=19% Similarity=0.403 Sum_probs=30.1
Q ss_pred HHHHHHHhccCCccEE--ecCchHHHHHHHHcCCCeEEe
Q 006006 95 FKLLEHIGLEMDLPVI--TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 95 lELLe~Ir~~~~IPVI--a~sd~e~a~kALe~GA~DYLl 131 (665)
++.++.|++...+||+ .....+.+..+.++||+...+
T Consensus 332 ~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~aGad~I~v 370 (511)
T 1kbi_A 332 WKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVL 370 (511)
T ss_dssp HHHHHHHHHHCSSCEEEEEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHcCCCEEEE
Confidence 6778888877788988 345578889999999998887
No 294
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}
Probab=25.76 E-value=1.1e+02 Score=32.30 Aligned_cols=79 Identities=5% Similarity=-0.055 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eEL~ 140 (665)
+.++|+++++... .+++..++-=++..|.++.+++|++...+||++ ..+...+.++++.|+.|++ .|+....=|.
T Consensus 211 ~~~~A~~~~~~L~-~~~i~~iEeP~~~~d~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit 289 (392)
T 3ddm_A 211 DLPRARQMAQRLG-PAQLDWLEEPLRADRPAAEWAELAQAAPMPLAGGENIAGVAAFETALAARSLRVMQPDLAKWGGFS 289 (392)
T ss_dssp CHHHHHHHHHHHG-GGCCSEEECCSCTTSCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHHTCEEEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHHH-HhCCCEEECCCCccchHHHHHHHHHhcCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCHH
Confidence 5678888776653 356666665455444367777887777899983 3456677788888887776 7777655554
Q ss_pred HHHH
Q 006006 141 NIWQ 144 (665)
Q Consensus 141 ~aLq 144 (665)
++++
T Consensus 290 ~~~~ 293 (392)
T 3ddm_A 290 GCLP 293 (392)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 295
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=25.58 E-value=1.2e+02 Score=31.11 Aligned_cols=90 Identities=13% Similarity=0.136 Sum_probs=0.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhC-------CCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCcc
Q 006006 36 VLVVDDDITCLRILEQMLRRC-------LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (665)
Q Consensus 36 VLIVDDD~~ire~Lk~lL~~~-------gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IP 108 (665)
+||.|||-.+...+...++.. .....++.+.+++.+.++.. +|.|.+| .|...+--+..+.++....+-
T Consensus 169 ~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~aG---aD~I~ld-~~~~~~~k~av~~v~~~ipi~ 244 (286)
T 1x1o_A 169 ILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEAG---ADLILLD-NFPLEALREAVRRVGGRVPLE 244 (286)
T ss_dssp EEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHHT---CSEEEEE-SCCHHHHHHHHHHHTTSSCEE
T ss_pred eEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcC---CCEEEEC-CCCHHHHHHHHHHhCCCCeEE
Q ss_pred EEecCchHHHHHHHHcCCCeE
Q 006006 109 VITDGRVSAVMRGIRHGACDY 129 (665)
Q Consensus 109 VIa~sd~e~a~kALe~GA~DY 129 (665)
+++--+.+.+.+..+.||+.+
T Consensus 245 AsGGIt~eni~~~a~tGvD~I 265 (286)
T 1x1o_A 245 ASGNMTLERAKAAAEAGVDYV 265 (286)
T ss_dssp EESSCCHHHHHHHHHHTCSEE
T ss_pred EEcCCCHHHHHHHHHcCCCEE
No 296
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=25.40 E-value=95 Score=32.20 Aligned_cols=53 Identities=13% Similarity=0.027 Sum_probs=42.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccC--CccEE---ecCchHHHHHHHHcCCCeEEeCC
Q 006006 80 FDVVLSDVHMPDMDGFKLLEHIGLEM--DLPVI---TDGRVSAVMRGIRHGACDYLIKP 133 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlELLe~Ir~~~--~IPVI---a~sd~e~a~kALe~GA~DYLlKP 133 (665)
.+||.+|+.- .-...++++++++.. .+|++ .-.+.+.+.++++.||+..++-.
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 6899999754 333468999998766 89988 56788999999999999998765
No 297
>4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A
Probab=25.16 E-value=95 Score=32.79 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCC
Q 006006 64 SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIR 135 (665)
Q Consensus 64 sngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~ 135 (665)
-+..+|+++++... .+++..+.-=++..+-++.++++++...+||.+ ..+.....++++.|+.|++ .|+..
T Consensus 220 ~~~~~A~~~~~~l~-~~~~~~iEeP~~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~d~~~ 294 (388)
T 4h83_A 220 YKPAVAVDLSRRIA-DLNIRWFEEPVEWHNDKRSMRDVRYQGSVPVCAGQTEFSASGCRDLMETGAIDVCNFDSSW 294 (388)
T ss_dssp BCHHHHHHHHHHTT-TSCCCCEESCBCSTTHHHHHHHHHHHSSSCEEECTTCSSHHHHHHHHHHTCCSEECCCGGG
T ss_pred CCHHHHHHHHHHhh-hcCcceeecCcccccchHHHHHHHhhcCCCccCCccccChHhHHHHHHcCCCCeEeeccee
Confidence 36789999888764 477777766555556677788888778899882 3456667788999999987 56543
No 298
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.06 E-value=85 Score=30.07 Aligned_cols=67 Identities=10% Similarity=0.075 Sum_probs=45.8
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCCC--------CHHHHHHHHhcc--CCccEE--ecCchHHHHHHHHcCCCe
Q 006006 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDM--------DGFKLLEHIGLE--MDLPVI--TDGRVSAVMRGIRHGACD 128 (665)
Q Consensus 61 ~tAsngeEALelLre~k~~PDLVIlDI~MP~m--------DGlELLe~Ir~~--~~IPVI--a~sd~e~a~kALe~GA~D 128 (665)
..+.+.+|+.... .. .|.|.++--.|.. -|++.++.++.. ..+||| +--+.+.+.++++.||++
T Consensus 93 ~s~~t~~e~~~A~--~G--aDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~~~nv~~~~~~Ga~g 168 (210)
T 3ceu_A 93 CSCHSVEEVKNRK--HF--YDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGINEDNLLEIKDFGFGG 168 (210)
T ss_dssp EEECSHHHHHTTG--GG--SSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCCTTTHHHHHHTTCSE
T ss_pred EecCCHHHHHHHh--hC--CCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHhCCCE
Confidence 3677888876653 33 8999887544421 267888888654 578998 333567788899999988
Q ss_pred EEe
Q 006006 129 YLI 131 (665)
Q Consensus 129 YLl 131 (665)
.-.
T Consensus 169 Vav 171 (210)
T 3ceu_A 169 AVV 171 (210)
T ss_dssp EEE
T ss_pred EEE
Confidence 743
No 299
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=25.02 E-value=4.2e+02 Score=25.97 Aligned_cols=53 Identities=11% Similarity=0.109 Sum_probs=35.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEE-CCHHHHHHHHHHc-C-CCceEEEE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTC-SQAAVALDILRER-K-GCFDVVLS 85 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~g--y~V~tA-sngeEALelLre~-k-~~PDLVIl 85 (665)
..+|+++--.+.+.+..++++.... ..+..+ .+.++++..+++. . +.+|+||.
T Consensus 12 m~~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~~le~av~~a~~~~~~~~~dVIIS 69 (225)
T 2pju_A 12 DKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIA 69 (225)
T ss_dssp -CCEEEEECCHHHHHHHHHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEE
T ss_pred CCCEEEEEchHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHHHhcCCCeEEEe
Confidence 3467777777777778888777643 345443 5678888887663 2 24899885
No 300
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=25.01 E-value=1.4e+02 Score=28.25 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=48.0
Q ss_pred HHHhCCCEE-EEECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhccC--CccEE--ecCchHHHHHHHHcC
Q 006006 52 MLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEM--DLPVI--TDGRVSAVMRGIRHG 125 (665)
Q Consensus 52 lL~~~gy~V-~tAsngeEALelLre~k~~PDLVIlDI~MP-~mDGlELLe~Ir~~~--~IPVI--a~sd~e~a~kALe~G 125 (665)
..+..+..+ ..+.+.+++.+..+ . ..|.|++ .| +..|++.++++++.. ++||+ +--..+.+.++++.|
T Consensus 96 ~~~~~g~~~~~g~~t~~e~~~a~~-~--G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI~~~~i~~~~~~G 169 (212)
T 2v82_A 96 RAVGYGMTVCPGCATATEAFTALE-A--GAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAG 169 (212)
T ss_dssp HHHHTTCEEECEECSHHHHHHHHH-T--TCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSCCTTTHHHHHHHT
T ss_pred HHHHcCCCEEeecCCHHHHHHHHH-C--CCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCCCHHHHHHHHHcC
Confidence 344445442 24788888876654 3 3899886 22 123578888886544 48888 222366777888899
Q ss_pred CCeEEeC
Q 006006 126 ACDYLIK 132 (665)
Q Consensus 126 A~DYLlK 132 (665)
|+.+..=
T Consensus 170 a~gv~vG 176 (212)
T 2v82_A 170 CAGAGLG 176 (212)
T ss_dssp CSEEEEC
T ss_pred CCEEEEC
Confidence 9998743
No 301
>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A
Probab=24.90 E-value=99 Score=32.23 Aligned_cols=76 Identities=12% Similarity=-0.006 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eEL~ 140 (665)
+.++|++.++... .+++..++--++. +-++.++++++...+||++ ..+...+.++++.|+.|++ .|+....-+.
T Consensus 203 ~~~~a~~~~~~l~-~~~i~~iEqP~~~-~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~ 280 (371)
T 2ovl_A 203 TVDGAIRAARALA-PFDLHWIEEPTIP-DDLVGNARIVRESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYT 280 (371)
T ss_dssp CHHHHHHHHHHHG-GGCCSEEECCSCT-TCHHHHHHHHHHHCSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTTTSHH
T ss_pred CHHHHHHHHHHHH-hcCCCEEECCCCc-ccHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCccccCCHH
Confidence 4567777766543 2455455544443 2356666676555789983 3356778888988877765 7887644444
Q ss_pred HH
Q 006006 141 NI 142 (665)
Q Consensus 141 ~a 142 (665)
.+
T Consensus 281 ~~ 282 (371)
T 2ovl_A 281 TF 282 (371)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 302
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=24.89 E-value=92 Score=23.95 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=19.5
Q ss_pred HHHHHHhCCCCCCHHHHHhhhcccc
Q 006006 245 KRILELMNVPGLTRENVASHLQEIN 269 (665)
Q Consensus 245 KkILeLL~~~~LtI~EVAs~VGYsD 269 (665)
+.|+.++ ..|++..|||..+|.+.
T Consensus 17 ~~il~~~-~~g~s~~eIA~~l~is~ 40 (74)
T 1fse_A 17 REVFELL-VQDKTTKEIASELFISE 40 (74)
T ss_dssp HHHHHHH-TTTCCHHHHHHHHTSCH
T ss_pred HHHHHHH-HcCCCHHHHHHHHCCCH
Confidence 3466665 78999999999999864
No 303
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=24.89 E-value=2.4e+02 Score=30.83 Aligned_cols=96 Identities=10% Similarity=-0.030 Sum_probs=56.9
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCC-----------CCC
Q 006006 33 GLRVLVVDDD----ITCLRILEQMLRR----CLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMD 93 (665)
Q Consensus 33 girVLIVDDD----~~ire~Lk~lL~~----~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP-----------~mD 93 (665)
+.+++++|-. ....+.+..+-+. ....+..+.+.++|..+++.. .|+|++-+.-. +..
T Consensus 254 gv~~l~Vd~~~g~~~~~~~~i~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~aG---ad~I~Vg~~~g~~~~~r~~~~~g~p 330 (503)
T 1me8_A 254 GADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAG---ADFIKIGIGGGSICITREQKGIGRG 330 (503)
T ss_dssp TCSEEEECCSCCCSHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHT---CSEEEECSSCSTTCCSTTTTCCCCC
T ss_pred hccceEEecccCcccchhhHHHHHHHhCCCCceEeeccccCHHHHHHHHHhC---CCeEEecccCCcCcccccccCCCCc
Confidence 4677777433 2233333322222 222345788889998888754 79888744210 122
Q ss_pred HHHHHHHHhcc---C------CccEE---ecCchHHHHHHHHcCCCeEEe
Q 006006 94 GFKLLEHIGLE---M------DLPVI---TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 94 GlELLe~Ir~~---~------~IPVI---a~sd~e~a~kALe~GA~DYLl 131 (665)
-++++..+.+. . .+||| .-.+...+.+|+.+||+....
T Consensus 331 ~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~i 380 (503)
T 1me8_A 331 QATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIML 380 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 34444444211 1 68999 356788899999999998765
No 304
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=24.66 E-value=3.6e+02 Score=23.75 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=44.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~gy--~V-~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~I 101 (665)
.+|..||-++...+..+..+...+. .+ ....+..+.+..+......+|+|++|.-.-..+.-++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHH
Confidence 5899999999999998888876553 23 35667777655443222349999998532223444555555
No 305
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}
Probab=24.59 E-value=1.2e+02 Score=31.78 Aligned_cols=78 Identities=9% Similarity=0.095 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eEL~ 140 (665)
+.++|+++++... .+++..++--++.. -++.+++|++...+||++ ..+...+.++++.|+.|++ .|+....-|.
T Consensus 221 ~~~~ai~~~~~l~-~~~i~~iE~P~~~~-d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 298 (403)
T 2ox4_A 221 DLVSAIQFAKAIE-EFNIFFYEEINTPL-NPRLLKEAKKKIDIPLASGERIYSRWGFLPFLEDRSIDVIQPDLGTCGGFT 298 (403)
T ss_dssp CHHHHHHHHHHHG-GGCEEEEECCSCTT-STHHHHHHHHTCCSCEEECTTCCHHHHHHHHHHTTCCSEECCCHHHHTHHH
T ss_pred CHHHHHHHHHHHH-hhCCCEEeCCCChh-hHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 5688888887653 36777777655542 356667777667899983 2346678888999977776 6665444444
Q ss_pred HHHH
Q 006006 141 NIWQ 144 (665)
Q Consensus 141 ~aLq 144 (665)
++++
T Consensus 299 e~~~ 302 (403)
T 2ox4_A 299 EFKK 302 (403)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 306
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=24.19 E-value=1.2e+02 Score=32.36 Aligned_cols=79 Identities=10% Similarity=0.076 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eEL~ 140 (665)
+.++|+++++... ..++..++--+|.. -++.+++|++...+||++ ..+...+.++++.|+.|++ .|+....=|.
T Consensus 190 ~~~~A~~~~~~L~-~~~i~~iEeP~~~~-d~~~~~~l~~~~~iPIa~dE~i~~~~~~~~~l~~~a~d~v~~d~~~~GGit 267 (405)
T 3rr1_A 190 SAPMAKVLIKELE-PYRPLFIEEPVLAE-QAETYARLAAHTHLPIAAGERMFSRFDFKRVLEAGGVSILQPDLSHAGGIT 267 (405)
T ss_dssp CHHHHHHHHHHHG-GGCCSCEECSSCCS-STHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHCCCSEECCBTTTTTHHH
T ss_pred CHHHHHHHHHHHH-hcCCCEEECCCCcc-cHHHHHHHHhcCCCCEEecCCcCCHHHHHHHHHHhCCCeEEEChhhcCCHH
Confidence 5678888776653 35666666545532 356677787777899983 3456677888988877776 7787765555
Q ss_pred HHHHH
Q 006006 141 NIWQH 145 (665)
Q Consensus 141 ~aLq~ 145 (665)
++++-
T Consensus 268 ea~ki 272 (405)
T 3rr1_A 268 ECVKI 272 (405)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 307
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=24.16 E-value=2.4e+02 Score=33.14 Aligned_cols=110 Identities=13% Similarity=0.177 Sum_probs=73.1
Q ss_pred ccEEEEEeCCH----------HHHHHHHHHHHhCCC--EEEEEC---CH---HHHHHHHHHcCCCceEEEEeCCCCCCCH
Q 006006 33 GLRVLVVDDDI----------TCLRILEQMLRRCLY--NVTTCS---QA---AVALDILRERKGCFDVVLSDVHMPDMDG 94 (665)
Q Consensus 33 girVLIVDDD~----------~ire~Lk~lL~~~gy--~V~tAs---ng---eEALelLre~k~~PDLVIlDI~MP~mDG 94 (665)
.++++||.+.+ ...+.+++++++.+. .|.... +. ++....+... -|++++=-. .+.-|
T Consensus 603 ~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~a---aDvfV~PS~-~Egfg 678 (816)
T 3s28_A 603 LANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDT---KGAFVQPAL-YEAFG 678 (816)
T ss_dssp HCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHT---TCEEEECCS-CBSSC
T ss_pred CeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhc---CeEEEECCC-ccCcc
Confidence 36788888776 356667777776653 344433 22 4455555433 488776433 24457
Q ss_pred HHHHHHHhccCCccEEecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006006 95 FKLLEHIGLEMDLPVITDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 149 (665)
Q Consensus 95 lELLe~Ir~~~~IPVIa~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlrk 149 (665)
+.+++.+. ..+|||+.+ .....+.+..|..+++..|-+.++|.++|..++..
T Consensus 679 lvllEAMA--~G~PVIasd-~GG~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~~ 730 (816)
T 3s28_A 679 LTVVEAMT--CGLPTFATC-KGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTK 730 (816)
T ss_dssp HHHHHHHH--TTCCEEEES-SBTHHHHCCBTTTBEEECTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCEEEeC-CCChHHHHccCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 77888774 568999543 33345667789999999999999999999887643
No 308
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=24.03 E-value=60 Score=26.12 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=23.6
Q ss_pred HHHHHhCCCCCCHHHHHhhhcccchhHHHHHHH
Q 006006 246 RILELMNVPGLTRENVASHLQEINLQKFRLYLK 278 (665)
Q Consensus 246 kILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FK 278 (665)
+|.+++..-|+|..++|..+|.+ .++++++.+
T Consensus 22 ~l~~~r~~~glsq~elA~~~gis-~~~is~~e~ 53 (83)
T 2a6c_A 22 VLQEHLRNSGLTQFKAAELLGVT-QPRVSDLMR 53 (83)
T ss_dssp HHHHHHHTTTCCHHHHHHHHTSC-HHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHc
Confidence 44556667899999999999974 556666654
No 309
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Probab=23.99 E-value=94 Score=33.27 Aligned_cols=79 Identities=20% Similarity=0.267 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEec----CchHHHHHHHHcCCCeEE-eCCCCHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITD----GRVSAVMRGIRHGACDYL-IKPIREEEL 139 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~----sd~e~a~kALe~GA~DYL-lKPv~~eEL 139 (665)
+.++|++.+.+.-+.+++..+.-=++..| ++-+++|++...+||++. .+.....++++.|+.|++ +|+....-|
T Consensus 268 ~~~~ai~~~~~~l~~~~i~~iEeP~~~~d-~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGi 346 (427)
T 2pa6_A 268 TREELLDYYKALVDEYPIVSIEDPFHEED-FEGFAMITKELDIQIVGDDLFVTNVERLRKGIEMKAANALLLKVNQIGTL 346 (427)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEECCSCTTC-HHHHHHHHHHSSSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSH
T ss_pred CHHHHHHHHHHHHhhCCCcEEEcCCChhh-HHHHHHHHhhCCCeEEeCccccCCHHHHHHHHHhCCCCEEEEcccccCCH
Confidence 67788887642111278888876666544 566666766677898833 336778888998987765 777544444
Q ss_pred HHHHH
Q 006006 140 KNIWQ 144 (665)
Q Consensus 140 ~~aLq 144 (665)
.++++
T Consensus 347 tea~~ 351 (427)
T 2pa6_A 347 SEAVD 351 (427)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 310
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=23.89 E-value=1.3e+02 Score=31.97 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=39.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC---C------EE-EEECCHHHHHHHHHHcCCCceEEEEeCCC
Q 006006 34 LRVLVVDDDITCLRILEQMLRRCL---Y------NV-TTCSQAAVALDILRERKGCFDVVLSDVHM 89 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~g---y------~V-~tAsngeEALelLre~k~~PDLVIlDI~M 89 (665)
-+|.+||-|+.+.+..++.+.... + .+ ....++.+.++.+.+..+.+|+||+|.--
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 277 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCC
Confidence 589999999999999988875311 1 23 35678888877653223359999999754
No 311
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=23.87 E-value=47 Score=26.56 Aligned_cols=30 Identities=7% Similarity=-0.012 Sum_probs=21.2
Q ss_pred HHHhCCCCCCHHHHHhhhcccchhHHHHHHH
Q 006006 248 LELMNVPGLTRENVASHLQEINLQKFRLYLK 278 (665)
Q Consensus 248 LeLL~~~~LtI~EVAs~VGYsD~qYF~k~FK 278 (665)
.++....++|..++|..+|. +.++++++.+
T Consensus 16 k~~R~~~gltq~elA~~~gi-s~~~is~~E~ 45 (78)
T 3qq6_A 16 KQYRKEKGYSLSELAEKAGV-AKSYLSSIER 45 (78)
T ss_dssp HHHHHHTTCCHHHHHHHHTC-CHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHCc-CHHHHHHHHc
Confidence 33344478999999999997 4566666654
No 312
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=23.82 E-value=1.6e+02 Score=32.18 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCCCH-HHHHHHHhccC-CccEE--ecCchHHHHHHHHcCCCeEEe
Q 006006 66 AAVALDILRERKGCFDVVLSDVHMPDMDG-FKLLEHIGLEM-DLPVI--TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 66 geEALelLre~k~~PDLVIlDI~MP~mDG-lELLe~Ir~~~-~IPVI--a~sd~e~a~kALe~GA~DYLl 131 (665)
..+.++.+.+.. +|+|.+|........ +++++.+++.. ++||| ...+.+.+.++.++||+....
T Consensus 256 ~~~~a~~~~~aG--~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 256 DKYRLDLLTQAG--VDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHHHHHHHHHTT--CSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHcC--CCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEE
Confidence 344445555544 999999887544333 57888887654 78888 356788899999999987765
No 313
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=23.77 E-value=2.7e+02 Score=26.81 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=45.8
Q ss_pred ccEEEEEe------CCHHHHHHHHHHHHhCCCEEEEE----CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006006 33 GLRVLVVD------DDITCLRILEQMLRRCLYNVTTC----SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (665)
Q Consensus 33 girVLIVD------DD~~ire~Lk~lL~~~gy~V~tA----sngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir 102 (665)
+-||++|+ |.....+.+.+.++..++.+... .+.++..+.+++ .|.|++ |+.+-+.+++.++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CCCCHHHHHHHHH
Confidence 46899996 44456777888888889988877 477777777764 477775 7777777766664
No 314
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=23.77 E-value=1.3e+02 Score=29.62 Aligned_cols=79 Identities=11% Similarity=0.153 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHcCCCceEE---EEeCCC-CCC-CHHHHHHHHhccCCccEE----ecCchHHHHHHHHcCCCeEEeCCCC
Q 006006 65 QAAVALDILRERKGCFDVV---LSDVHM-PDM-DGFKLLEHIGLEMDLPVI----TDGRVSAVMRGIRHGACDYLIKPIR 135 (665)
Q Consensus 65 ngeEALelLre~k~~PDLV---IlDI~M-P~m-DGlELLe~Ir~~~~IPVI----a~sd~e~a~kALe~GA~DYLlKPv~ 135 (665)
+-.++++.+ +.. .|.+ ++|-+. |.. -|.++++.||+..+.|+. ..+-..++..+.++||+....-...
T Consensus 14 ~l~~~i~~~-~~g--ad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~dp~~~i~~~~~aGAd~itvh~Ea 90 (231)
T 3ctl_A 14 KFKEQIEFI-DSH--ADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPET 90 (231)
T ss_dssp GHHHHHHHH-HTT--CSCEEEEEECSSSSSCCCBCHHHHHHHHTTCCSCEEEEEESSCGGGTHHHHHHHTCSEEEECGGG
T ss_pred hHHHHHHHH-HcC--CCEEEEEEEeCccCccchhcHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEECccc
Confidence 456677777 433 4544 445442 333 388999999876666655 3333446788899999877654433
Q ss_pred -HHHHHHHHHHH
Q 006006 136 -EEELKNIWQHV 146 (665)
Q Consensus 136 -~eEL~~aLq~V 146 (665)
...+.++++.+
T Consensus 91 ~~~~~~~~i~~i 102 (231)
T 3ctl_A 91 INGQAFRLIDEI 102 (231)
T ss_dssp CTTTHHHHHHHH
T ss_pred CCccHHHHHHHH
Confidence 22344454444
No 315
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=23.63 E-value=1.4e+02 Score=30.96 Aligned_cols=51 Identities=10% Similarity=-0.012 Sum_probs=39.5
Q ss_pred HHHHHHhcc-CCccEE-ecCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 006006 96 KLLEHIGLE-MDLPVI-TDGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 146 (665)
Q Consensus 96 ELLe~Ir~~-~~IPVI-a~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~V 146 (665)
+.+++.++. +..+|. ..++.+.+.+|++.||+-..+..+++++++++++.+
T Consensus 187 ~Av~~ar~~~~~~~IeVEv~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 187 KAVTKAKKLDSNKVVEVEVTNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp HHHHHHHHHCTTSCEEEEESSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCcEEEEeCCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 345555533 456666 566778999999999999999999999999888764
No 316
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Probab=23.59 E-value=1.1e+02 Score=32.72 Aligned_cols=76 Identities=9% Similarity=0.034 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCC-CCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHH
Q 006006 64 SQAAVALDILRERKGCFDVVLSDVH-MPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEE 138 (665)
Q Consensus 64 sngeEALelLre~k~~PDLVIlDI~-MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eE 138 (665)
-+.++|+++++... ..++..++-= ++..| ++.+++|++...+||++ ..+...+.++++.|+.|++ .|+....=
T Consensus 224 ~~~~~A~~~~~~L~-~~~i~~iEqP~~~~~~-~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GG 301 (410)
T 3dip_A 224 WGTHAAARICNALA-DYGVLWVEDPIAKMDN-IPAVADLRRQTRAPICGGENLAGTRRFHEMLCADAIDFVMLDLTWCGG 301 (410)
T ss_dssp BCHHHHHHHHHHGG-GGTCSEEECCBSCTTC-HHHHHHHHHHHCCCEEECTTCCSHHHHHHHHHTTCCSEEEECTTTSSC
T ss_pred CCHHHHHHHHHHHH-hcCCCEEECCCCCccc-HHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCeEeecccccCC
Confidence 35678888777653 3566677754 45333 56667777666789882 3456677888999877665 78866444
Q ss_pred HHH
Q 006006 139 LKN 141 (665)
Q Consensus 139 L~~ 141 (665)
|.+
T Consensus 302 it~ 304 (410)
T 3dip_A 302 LSE 304 (410)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 317
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=23.53 E-value=75 Score=24.20 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=20.1
Q ss_pred HHHHHhCCCCCCHHHHHhhhcccchh
Q 006006 246 RILELMNVPGLTRENVASHLQEINLQ 271 (665)
Q Consensus 246 kILeLL~~~~LtI~EVAs~VGYsD~q 271 (665)
.++.+.-..|++..|||..+|.+...
T Consensus 22 ~il~l~~~~g~s~~eIA~~lgis~~t 47 (70)
T 2o8x_A 22 EALLLTQLLGLSYADAAAVCGCPVGT 47 (70)
T ss_dssp HHHHHHHTSCCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHH
Confidence 45555457899999999999997544
No 318
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=23.45 E-value=1.1e+02 Score=32.38 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCC------C----CC-CHHHHHHHHhccCCccEEec-----CchHHHHHHHHcCCCe
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHM------P----DM-DGFKLLEHIGLEMDLPVITD-----GRVSAVMRGIRHGACD 128 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~M------P----~m-DGlELLe~Ir~~~~IPVIa~-----sd~e~a~kALe~GA~D 128 (665)
..+++.+.++... .|.+.++++. | +. +-++.++.|++...+|||.. ...+.+.++.++||+.
T Consensus 156 ~~e~~~~~ve~~~--adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~aGad~ 233 (365)
T 3sr7_A 156 PYQAGLQAVRDLQ--PLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLGVKT 233 (365)
T ss_dssp CHHHHHHHHHHHC--CSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHHTCCE
T ss_pred CHHHHHHHHHhcC--CCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHcCCCE
Confidence 4567777776655 7888888764 3 23 23378888887778999822 5778899999999988
Q ss_pred EEe
Q 006006 129 YLI 131 (665)
Q Consensus 129 YLl 131 (665)
..+
T Consensus 234 I~V 236 (365)
T 3sr7_A 234 VDI 236 (365)
T ss_dssp EEC
T ss_pred EEE
Confidence 876
No 319
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=23.40 E-value=2.7e+02 Score=28.09 Aligned_cols=74 Identities=11% Similarity=0.065 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEecCchHHHHHHHHcCCC---------------eE-
Q 006006 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITDGRVSAVMRGIRHGAC---------------DY- 129 (665)
Q Consensus 66 geEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~sd~e~a~kALe~GA~---------------DY- 129 (665)
.++..+.+.. .|++++--. .+.-|+.+++.+. ..+|||+.+. ....+.+..|.. ++
T Consensus 264 ~~~~~~~~~~----adv~v~pS~-~E~~~~~~lEAma--~G~PvI~s~~-~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~ 335 (413)
T 3oy2_A 264 DERVDMMYNA----CDVIVNCSS-GEGFGLCSAEGAV--LGKPLIISAV-GGADDYFSGDCVYKIKPSAWISVDDRDGIG 335 (413)
T ss_dssp HHHHHHHHHH----CSEEEECCS-CCSSCHHHHHHHT--TTCCEEEECC-HHHHHHSCTTTSEEECCCEEEECTTTCSSC
T ss_pred HHHHHHHHHh----CCEEEeCCC-cCCCCcHHHHHHH--cCCCEEEcCC-CChHHHHccCcccccccccccccccccCcc
Confidence 4555555543 477777433 2334667777764 4689996443 345566667776 88
Q ss_pred -EeCCCCHHHHHHHHHHHHH
Q 006006 130 -LIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 130 -LlKPv~~eEL~~aLq~Vlr 148 (665)
+..|-+.++|.+++ .++.
T Consensus 336 gl~~~~d~~~la~~i-~l~~ 354 (413)
T 3oy2_A 336 GIEGIIDVDDLVEAF-TFFK 354 (413)
T ss_dssp CEEEECCHHHHHHHH-HHTT
T ss_pred eeeCCCCHHHHHHHH-HHhc
Confidence 99999999999999 8765
No 320
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=23.30 E-value=1.1e+02 Score=28.66 Aligned_cols=61 Identities=23% Similarity=0.314 Sum_probs=43.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHHc--CCCceEEEEeCCCC
Q 006006 30 FPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRER--KGCFDVVLSDVHMP 90 (665)
Q Consensus 30 fP~girVLIVDDD~~ire~Lk~lL~~~gy--~V~-tAsngeEALelLre~--k~~PDLVIlDI~MP 90 (665)
++.+.+|.-||-++...+..++.++..+. .|. ...++.+.+..+... ...+|+|++|....
T Consensus 80 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 80 LQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD 145 (221)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGG
T ss_pred CCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 45567999999999999999998877654 243 567777766544320 02499999997443
No 321
>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A*
Probab=23.24 E-value=1.5e+02 Score=31.30 Aligned_cols=78 Identities=12% Similarity=0.169 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEec---CchHHHHHHHHcCCCeEE-eCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITD---GRVSAVMRGIRHGACDYL-IKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~---sd~e~a~kALe~GA~DYL-lKPv~~eEL~ 140 (665)
+.++|++.++... .+++..++-=+|..| ++.+++|++...+||++. .+...+.++++.|+.|++ .|+....=|.
T Consensus 225 ~~~~A~~~~~~l~-~~~i~~iEeP~~~~d-~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit 302 (383)
T 3toy_A 225 DPAEATRRIARLA-DYDLTWIEEPVPQEN-LSGHAAVRERSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGIT 302 (383)
T ss_dssp CHHHHHHHHHHHG-GGCCSEEECCSCTTC-HHHHHHHHHHCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHHH-hhCCCEEECCCCcch-HHHHHHHHhhcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 4566666665543 245555554343322 555666666667898832 345567788888877765 7887655555
Q ss_pred HHHH
Q 006006 141 NIWQ 144 (665)
Q Consensus 141 ~aLq 144 (665)
++++
T Consensus 303 ~~~~ 306 (383)
T 3toy_A 303 GWLN 306 (383)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 322
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=23.24 E-value=51 Score=24.83 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=24.6
Q ss_pred HHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHH
Q 006006 246 RILELMNVPGLTRENVASHLQEINLQKFRLYLKR 279 (665)
Q Consensus 246 kILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK 279 (665)
+|.+++..-+++..++|..+|.+ .++++++.+.
T Consensus 5 ~l~~~r~~~glsq~~lA~~~gis-~~~i~~~e~g 37 (69)
T 1r69_A 5 RVKSKRIQLGLNQAELAQKVGTT-QQSIEQLENG 37 (69)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTSC-HHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHcC
Confidence 45566667899999999999975 5666666543
No 323
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=23.15 E-value=51 Score=24.98 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=25.1
Q ss_pred HHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHH
Q 006006 245 KRILELMNVPGLTRENVASHLQEINLQKFRLYLKR 279 (665)
Q Consensus 245 KkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK 279 (665)
++|.+++..-+++..++|..+|.+ .++++++.+.
T Consensus 6 ~~l~~~r~~~glsq~~lA~~~gis-~~~i~~~e~g 39 (71)
T 1zug_A 6 ERLKKRRIALKMTQTELATKAGVK-QQSIQLIEAG 39 (71)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSC-HHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCC-HHHHHHHHcC
Confidence 345556666899999999999975 5666666653
No 324
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=23.07 E-value=17 Score=34.13 Aligned_cols=15 Identities=13% Similarity=0.459 Sum_probs=6.1
Q ss_pred CChhHHHHHHHhhhC
Q 006006 320 IPPQTLAALHAELLG 334 (665)
Q Consensus 320 ~~~~~~~~~~~~~~g 334 (665)
+|......+...++.
T Consensus 46 LPke~~k~iPk~y~~ 60 (150)
T 1qb3_A 46 LPKAMLKVIPSDYFN 60 (150)
T ss_dssp CCHHHHHTSCGGGBC
T ss_pred cCHHHHhhccccccc
Confidence 344444443333333
No 325
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=22.92 E-value=1.9e+02 Score=29.97 Aligned_cols=75 Identities=11% Similarity=0.160 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeE-EeCCCCHHHH
Q 006006 64 SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDY-LIKPIREEEL 139 (665)
Q Consensus 64 sngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DY-LlKPv~~eEL 139 (665)
-+.++|+++++... .+++..++-=++..| ++.+++|++...+||++ ..+...+.++++.|+.|+ ..|+....=|
T Consensus 194 ~~~~~a~~~~~~L~-~~~i~~iEqP~~~~d-~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGi 271 (354)
T 3jva_A 194 WTPKDAVKAIQALA-DYQIELVEQPVKRRD-LEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGI 271 (354)
T ss_dssp SCHHHHHHHHHHTT-TSCEEEEECCSCTTC-HHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSH
T ss_pred CCHHHHHHHHHHHH-hcCCCEEECCCChhh-HHHHHHHHHhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECchhcCCH
Confidence 36688888888764 478878775555433 66677787777899983 345666778888876665 5787554334
Q ss_pred H
Q 006006 140 K 140 (665)
Q Consensus 140 ~ 140 (665)
.
T Consensus 272 t 272 (354)
T 3jva_A 272 H 272 (354)
T ss_dssp H
T ss_pred H
Confidence 3
No 326
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=22.84 E-value=37 Score=34.92 Aligned_cols=93 Identities=23% Similarity=0.288 Sum_probs=59.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC-ccEEe
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD-LPVIT 111 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~-IPVIa 111 (665)
.|||.||-....-.+.+.+.|+..++.+.......+.+ .. +|+||+ -+.||. +++..+.... +||++
T Consensus 29 ~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~-----~~--~DlvIv----lGGDGT-~L~aa~~~~~~~PilG 96 (278)
T 1z0s_A 29 GMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL-----EN--FDFIVS----VGGDGT-ILRILQKLKRCPPIFG 96 (278)
T ss_dssp -CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG-----GG--SSEEEE----EECHHH-HHHHHTTCSSCCCEEE
T ss_pred ceEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccccc-----CC--CCEEEE----ECCCHH-HHHHHHHhCCCCcEEE
Confidence 48898885421116677888888888887654432222 12 798886 256773 4555544322 89983
Q ss_pred cCchHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006006 112 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 148 (665)
Q Consensus 112 ~sd~e~a~kALe~GA~DYLlKPv~~eEL~~aLq~Vlr 148 (665)
-. .|-.+||. +++++++.+++.+++.
T Consensus 97 IN----------~G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 97 IN----------TGRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp EE----------CSSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred EC----------CCCCcccc-ccCHHHHHHHHHHHHh
Confidence 22 25667777 5778888888888876
No 327
>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}
Probab=22.73 E-value=1.1e+02 Score=31.94 Aligned_cols=77 Identities=6% Similarity=0.000 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHHHHH
Q 006006 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEELKN 141 (665)
Q Consensus 66 geEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eEL~~ 141 (665)
.++|+++++... ..++..++--++.. -++.+++|++...+||++ ..+...+.++++.|+.|++ .|+....=|.+
T Consensus 207 ~~~A~~~~~~l~-~~~i~~iEqP~~~~-~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~ 284 (374)
T 3sjn_A 207 CGHSAMMAKRLE-EFNLNWIEEPVLAD-SLISYEKLSRQVSQKIAGGESLTTRYEFQEFITKSNADIVQPDITRCGGITE 284 (374)
T ss_dssp HHHHHHHHHHSG-GGCCSEEECSSCTT-CHHHHHHHHHHCSSEEEECTTCCHHHHHHHHHHHHCCSEECCBTTTSSHHHH
T ss_pred HHHHHHHHHHhh-hcCceEEECCCCcc-cHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence 778888777653 35666666555533 366677777777899983 2345667788888877765 78877555544
Q ss_pred HHH
Q 006006 142 IWQ 144 (665)
Q Consensus 142 aLq 144 (665)
+++
T Consensus 285 ~~~ 287 (374)
T 3sjn_A 285 MKK 287 (374)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 328
>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A
Probab=22.61 E-value=94 Score=32.14 Aligned_cols=78 Identities=10% Similarity=0.126 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eEL~ 140 (665)
+.++|++.++... .+++..++--++. +-++.++++++...+||++ ..+...+.++++.|+.|++ .|+....-+.
T Consensus 201 ~~~~a~~~~~~l~-~~~i~~iE~P~~~-~~~~~~~~l~~~~~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~ 278 (359)
T 1mdl_A 201 DVPAAIKRSQALQ-QEGVTWIEEPTLQ-HDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVT 278 (359)
T ss_dssp CHHHHHHHHHHHH-HHTCSCEECCSCT-TCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTTTHHH
T ss_pred CHHHHHHHHHHHH-HhCCCeEECCCCh-hhHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeecchhhCCHH
Confidence 3456655554322 1233333433332 2356666676666799983 3456778888988876664 7887765555
Q ss_pred HHHH
Q 006006 141 NIWQ 144 (665)
Q Consensus 141 ~aLq 144 (665)
.+++
T Consensus 279 ~~~~ 282 (359)
T 1mdl_A 279 GWIR 282 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 329
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=22.59 E-value=1.9e+02 Score=31.71 Aligned_cols=63 Identities=17% Similarity=0.102 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCC-CHHHHHHHHhcc-CCccEE--ecCchHHHHHHHHcCCCeEEe
Q 006006 67 AVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGLE-MDLPVI--TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 67 eEALelLre~k~~PDLVIlDI~MP~m-DGlELLe~Ir~~-~~IPVI--a~sd~e~a~kALe~GA~DYLl 131 (665)
.+.++.+.+.. +|+|.+|...+.. .-+++++.+++. +.+||+ ...+.+.+.++.++||+....
T Consensus 231 ~~~a~~l~~aG--~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 231 GERVAALVAAG--VDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp HHHHHHHHHTT--CSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHhhcc--cceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcCCCEEEE
Confidence 34444444444 9999999876653 335778888765 478888 357788899999999988875
No 330
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=22.41 E-value=76 Score=30.76 Aligned_cols=80 Identities=11% Similarity=0.017 Sum_probs=47.7
Q ss_pred HHhCCCEEE-EE--CCHHHHHHHHHHcCCCceEEEEeCCCCCCC-------HHHHHHHHhccC-CccEE--ecCchHHHH
Q 006006 53 LRRCLYNVT-TC--SQAAVALDILRERKGCFDVVLSDVHMPDMD-------GFKLLEHIGLEM-DLPVI--TDGRVSAVM 119 (665)
Q Consensus 53 L~~~gy~V~-tA--sngeEALelLre~k~~PDLVIlDI~MP~mD-------GlELLe~Ir~~~-~IPVI--a~sd~e~a~ 119 (665)
+...+..+. .+ .+..+.++.+.......|.|+++-..|+.+ +++.++++++.. ++|++ .--+.+.+.
T Consensus 109 i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~~ni~ 188 (228)
T 1h1y_A 109 IKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTID 188 (228)
T ss_dssp HHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCSTTTHH
T ss_pred HHHcCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCHHHHH
Confidence 334455554 33 233455555544200279999988777533 466667776554 77876 223346677
Q ss_pred HHHHcCCCeEEeC
Q 006006 120 RGIRHGACDYLIK 132 (665)
Q Consensus 120 kALe~GA~DYLlK 132 (665)
++++.||+.++.=
T Consensus 189 ~~~~aGaD~vvvG 201 (228)
T 1h1y_A 189 VAASAGANCIVAG 201 (228)
T ss_dssp HHHHHTCCEEEES
T ss_pred HHHHcCCCEEEEC
Confidence 7888899988753
No 331
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=22.34 E-value=1.6e+02 Score=32.34 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=44.9
Q ss_pred HHHHHHHHcCCCceEEEEeCCCCCCC-HHHHHHHHhcc-CCccEE--ecCchHHHHHHHHcCCCeEEe
Q 006006 68 VALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLE-MDLPVI--TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 68 EALelLre~k~~PDLVIlDI~MP~mD-GlELLe~Ir~~-~~IPVI--a~sd~e~a~kALe~GA~DYLl 131 (665)
+..+.+.+.. +|+|.+|...+... -+++++++++. +++||+ ...+.+.+.++.++||+....
T Consensus 234 ~~a~~l~~aG--~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 234 ERVKALVEAG--VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHTT--CSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHhcc--CceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhCCCEEEE
Confidence 3334343333 99999998876543 45778888765 478887 356788899999999998875
No 332
>3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}
Probab=22.32 E-value=1.5e+02 Score=30.99 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHc--CCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHH
Q 006006 64 SQAAVALDILRER--KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREE 137 (665)
Q Consensus 64 sngeEALelLre~--k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~e 137 (665)
-+.++|++.++.. . .+++..++-=++..| ++.++++++...+||.+ ..+.....++++.|+.|++ .||.. .
T Consensus 198 ~~~~~A~~~~~~L~~~-~~~i~~iEeP~~~~d-~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~-G 274 (365)
T 3ik4_A 198 YDVERALAFCAACKAE-SIPMVLFEQPLPRED-WAGMAQVTAQSGFAVAADESARSAHDVLRIAREGTASVINIKLMK-A 274 (365)
T ss_dssp CCHHHHHHHHHHHHHT-TCCEEEEECCSCTTC-HHHHHHHHHHSSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHH-H
T ss_pred CCHHHHHHHHHHHhhC-CCCceEEECCCCccc-HHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEcCCc-c
Confidence 3567888777665 3 378888876555433 56667777667799883 3355667788888877765 78765 4
Q ss_pred HHHHHHH
Q 006006 138 ELKNIWQ 144 (665)
Q Consensus 138 EL~~aLq 144 (665)
=|..+++
T Consensus 275 Git~~~~ 281 (365)
T 3ik4_A 275 GVAEGLK 281 (365)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 4544443
No 333
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=22.21 E-value=1.8e+02 Score=31.16 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=41.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC------CCE---E-EEECCHHHHHHHHHHcCCCceEEEEeCCCC
Q 006006 34 LRVLVVDDDITCLRILEQMLRRC------LYN---V-TTCSQAAVALDILRERKGCFDVVLSDVHMP 90 (665)
Q Consensus 34 irVLIVDDD~~ire~Lk~lL~~~------gy~---V-~tAsngeEALelLre~k~~PDLVIlDI~MP 90 (665)
-+|.+||=|+.+.+..++.+... ..+ + ....++.+.++...+....+|+||+|+--+
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~ 295 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAV 295 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSS
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCC
Confidence 48999999999999988886421 111 3 357888888887655444599999997543
No 334
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=22.13 E-value=6.1e+02 Score=25.43 Aligned_cols=102 Identities=15% Similarity=0.091 Sum_probs=58.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCccEE
Q 006006 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (665)
Q Consensus 33 girVLIVDDD~~ire~Lk~lL~~~gy~V~-tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir-~~~~IPVI 110 (665)
.+||.||---..-...+..+....++++. .+....+..+.+.+. +.+-..+ |--++ +. ...++.+|
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~---~g~~~~~------~~~~~---l~~~~~D~V~i 71 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEA---NGAEAVA------SPDEV---FARDDIDGIVI 71 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHT---TTCEEES------SHHHH---TTCSCCCEEEE
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH---cCCceeC------CHHHH---hcCCCCCEEEE
Confidence 47888888876666656555554466665 444434444433332 2211111 11122 22 23455566
Q ss_pred ---ecCchHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHH
Q 006006 111 ---TDGRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHV 146 (665)
Q Consensus 111 ---a~sd~e~a~kALe~GA~DYLlKPv--~~eEL~~aLq~V 146 (665)
.....+.+.+|++.|..=++-||+ +.++..+.++.+
T Consensus 72 ~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a 112 (344)
T 3euw_A 72 GSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKI 112 (344)
T ss_dssp CSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHH
T ss_pred eCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHH
Confidence 234556788999999999999995 567776655544
No 335
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=22.08 E-value=76 Score=26.02 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=24.0
Q ss_pred HHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHH
Q 006006 245 KRILELMNVPGLTRENVASHLQEINLQKFRLYLK 278 (665)
Q Consensus 245 KkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FK 278 (665)
++|.+++..-++|..++|..+|.+ .++++++.+
T Consensus 12 ~~lk~~r~~~glsq~~lA~~~gis-~~~is~~e~ 44 (94)
T 2kpj_A 12 ENLNSYIAKSEKTQLEIAKSIGVS-PQTFNTWCK 44 (94)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHTCC-HHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHh
Confidence 345566677899999999999975 556666554
No 336
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=22.02 E-value=1.2e+02 Score=29.80 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=31.0
Q ss_pred HHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeEEeC
Q 006006 94 GFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDYLIK 132 (665)
Q Consensus 94 GlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DYLlK 132 (665)
.+++++++++..++||+ .-.+.+.+.+++++||+.++.=
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 55688888776788988 4456888989999999999864
No 337
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=21.98 E-value=3.4e+02 Score=25.56 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=42.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCE--E-EEECCHHHHHHHHHHc------------C-CCceEEEEeCCC
Q 006006 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRER------------K-GCFDVVLSDVHM 89 (665)
Q Consensus 30 fP~girVLIVDDD~~ire~Lk~lL~~~gy~--V-~tAsngeEALelLre~------------k-~~PDLVIlDI~M 89 (665)
+|.+.+|..||-++...+..++.+...+.. + ....+..+.+..+... . ..+|+|++|...
T Consensus 82 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~ 157 (239)
T 2hnk_A 82 LPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK 157 (239)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCH
Confidence 344679999999999999999998876542 3 3567777766544321 1 249999999643
No 338
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=21.74 E-value=49 Score=31.23 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=24.5
Q ss_pred HHhCCCCC--CHHHHHhhhcccchhHHHHHHHHH
Q 006006 249 ELMNVPGL--TRENVASHLQEINLQKFRLYLKRL 280 (665)
Q Consensus 249 eLL~~~~L--tI~EVAs~VGYsD~qYF~k~FKK~ 280 (665)
+++...++ |..|+|.++|.+..+.++++++++
T Consensus 17 ~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l 50 (202)
T 1jhf_A 17 DHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL 50 (202)
T ss_dssp HHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHH
Confidence 33444577 999999999998777777777764
No 339
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=21.57 E-value=30 Score=26.95 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=24.6
Q ss_pred HHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHH
Q 006006 246 RILELMNVPGLTRENVASHLQEINLQKFRLYLKR 279 (665)
Q Consensus 246 kILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK 279 (665)
+|.+++...|+|..++|..+|. +.++++++.+.
T Consensus 12 ~l~~~r~~~glsq~~lA~~~gi-s~~~is~~e~g 44 (73)
T 3omt_A 12 RLKSVLAEKGKTNLWLTETLDK-NKTTVSKWCTN 44 (73)
T ss_dssp CHHHHHHHHTCCHHHHHHHTTC-CHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHcC
Confidence 4556677789999999999997 45666666543
No 340
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=21.56 E-value=2.2e+02 Score=30.32 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=32.1
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCE-EEE-----------------ECCHHHHHHHHHHcCCCceEEEEe
Q 006006 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYN-VTT-----------------CSQAAVALDILRERKGCFDVVLSD 86 (665)
Q Consensus 28 d~fP~girVLIVDDD~~ire~Lk~lL~~~gy~-V~t-----------------AsngeEALelLre~k~~PDLVIlD 86 (665)
..-|..|||||+...-.......++.+..+.. +.. ..+.+..++.+++.. +|+|+..
T Consensus 16 ~~~p~~m~ilvlG~ggre~ala~~l~~s~~v~~v~~~pgn~g~~~~~~~~~i~~~d~~~l~~~a~~~~--id~vv~g 90 (442)
T 3lp8_A 16 TQGPGSMNVLVIGSGGREHSMLHHIRKSTLLNKLFIAPGREGMSGLADIIDIDINSTIEVIQVCKKEK--IELVVIG 90 (442)
T ss_dssp ----CCEEEEEEECSHHHHHHHHHHTTCTTEEEEEEEECCGGGTTTSEECCCCTTCHHHHHHHHHHTT--CCEEEEC
T ss_pred cCCCCCCEEEEECCChHHHHHHHHHHhCCCCCEEEEECCChHHhhccceeecCcCCHHHHHHHHHHhC--CCEEEEC
Confidence 44677899999999844333333333332222 221 124566777777766 9999975
No 341
>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A
Probab=21.52 E-value=1e+02 Score=33.03 Aligned_cols=78 Identities=9% Similarity=0.127 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eEL~ 140 (665)
+.++|+++++... ..++..++--+|..| ++.+++|++...+||++ ..+...+.++++.|+.|++ .|+....=|.
T Consensus 238 ~~~~A~~~~~~L~-~~~i~~iEqP~~~~d-~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~~~~GGit 315 (424)
T 3v3w_A 238 TPIEAARLGKALE-PYHLFWMEDAVPAEN-QESFKLIRQHTTTPLAVGEVFNSIHDCRELIQNQWIDYIRTTIVHAGGIS 315 (424)
T ss_dssp CHHHHHHHHHHHG-GGCCSEEECCSCCSS-TTHHHHHHHHCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHHH-hcCCCEEECCCChHh-HHHHHHHHhhCCCCEEEccCcCCHHHHHHHHHcCCCCeEeecchhcCCHH
Confidence 5678888776653 356666665555322 34456666667799983 3356677888999977776 7887765565
Q ss_pred HHHH
Q 006006 141 NIWQ 144 (665)
Q Consensus 141 ~aLq 144 (665)
.+++
T Consensus 316 ~~~~ 319 (424)
T 3v3w_A 316 QMRR 319 (424)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 342
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=21.45 E-value=5.6e+02 Score=26.47 Aligned_cols=115 Identities=10% Similarity=-0.017 Sum_probs=0.0
Q ss_pred HHHHHHhcCC--------------------------CCCcceeeeeccCCCCCCCccEEEEEeCCHHHHHHHHHHHHhCC
Q 006006 4 LQRIVQSSGG--------------------------SGYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCL 57 (665)
Q Consensus 4 ~~~~V~~mgG--------------------------sg~Gs~f~~~~~~~d~fP~girVLIVDDD~~ire~Lk~lL~~~g 57 (665)
++++|+...| .|..+++.+.-.+ .-+.-+|..+.+-....+.+++......
T Consensus 135 t~~~v~a~~g~~~~i~~TRKt~Pglr~l~kyAv~~GGg~nHR~gL~d~v---likdNHi~~~G~i~~Av~~~r~~~p~~~ 211 (298)
T 3gnn_A 135 TRQYVDRIADTRARILDTRKTLPGLRLAQKYAVRVGGGANQRLALYAGI---LIKENHIAAAGGVGEALDAAFALNAEVP 211 (298)
T ss_dssp HHHHHHHTTTSSCCEECCSCCCTTCHHHHHHHHHHTTCCCC----------------------CHHHHHHHHHHHC--CC
T ss_pred HHHHHHHhCCCCeEEEEecCCCcchHHHHHhhHHhcCccceecCCCcEE---EEeHHHHHHcCCHHHHHHHHHHhCCCCC
Q ss_pred CEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEE---ecCchHHHHHHHHcCCCeE
Q 006006 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI---TDGRVSAVMRGIRHGACDY 129 (665)
Q Consensus 58 y~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVI---a~sd~e~a~kALe~GA~DY 129 (665)
..|. +.+.+|+.+.++.. +|+|.+|- |+--++-+.++....-..| +.-+.+.+.+..+.|++.+
T Consensus 212 ieVE-vdtlde~~eAl~aG---aD~I~LDn----~~~~~l~~av~~i~~~v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 212 VQIE-VETLDQLRTALAHG---ARSVLLDN----FTLDMMRDAVRVTEGRAVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp CEEE-ESSHHHHHHHHHTT---CEEEEEES----CCHHHHHHHHHHHTTSEEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEEE-eCCHHHHHHHHHcC---CCEEEECC----CCHHHHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEE
No 343
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=21.45 E-value=1.1e+02 Score=24.89 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=19.4
Q ss_pred HHHHHHhCCCCCCHHHHHhhhcccc
Q 006006 245 KRILELMNVPGLTRENVASHLQEIN 269 (665)
Q Consensus 245 KkILeLL~~~~LtI~EVAs~VGYsD 269 (665)
++|+.|+ ..|++..|||..+|.+-
T Consensus 27 ~~vl~l~-~~g~s~~eIA~~l~is~ 50 (82)
T 1je8_A 27 RDILKLI-AQGLPNKMIARRLDITE 50 (82)
T ss_dssp HHHHHHH-TTTCCHHHHHHHHTSCH
T ss_pred HHHHHHH-HcCCCHHHHHHHHCcCH
Confidence 3466665 78999999999999864
No 344
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=21.30 E-value=2.2e+02 Score=25.42 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=38.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI 87 (665)
.+.+|.++..... ..+|...+..+..+.+..++++++...+ .|+++.|.
T Consensus 111 ~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~g~--~D~~~~~~ 159 (228)
T 2pyy_A 111 PGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQTKK--ADAVVFDA 159 (228)
T ss_dssp TTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHHTTS--SSEEEEEH
T ss_pred CCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHHcCC--CCEEEecH
Confidence 4568888877652 3445556788889999999999998766 99999984
No 345
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=21.13 E-value=53 Score=27.27 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=20.3
Q ss_pred CCCHHHHHhhhcccchhHHHHHHHHH
Q 006006 255 GLTRENVASHLQEINLQKFRLYLKRL 280 (665)
Q Consensus 255 ~LtI~EVAs~VGYsD~qYF~k~FKK~ 280 (665)
-.++.|||+.+|++ ..=-++.++++
T Consensus 24 ~psv~EIa~~lgvS-~~TVrr~L~~L 48 (77)
T 2jt1_A 24 PVKTRDIADAAGLS-IYQVRLYLEQL 48 (77)
T ss_dssp CEEHHHHHHHHTCC-HHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCC-HHHHHHHHHHH
Confidence 35799999999996 44488888887
No 346
>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A
Probab=20.89 E-value=1.3e+02 Score=31.79 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eEL~ 140 (665)
+.++|+++++... ..++..++-=++.. -++.+++|++...+||++ ..+...+.++++.|+.|++ .|+....=|.
T Consensus 222 ~~~~A~~~~~~L~-~~~i~~iEeP~~~~-~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~d~~~~GGit 299 (400)
T 4dxk_A 222 QLLPAMQIAKALT-PYQTFWHEDPIKMD-SLSSLTRYAAVSPAPISASETLGSRWAFRDLLETGAAGVVMLDISWCGGLS 299 (400)
T ss_dssp CHHHHHHHHHHTG-GGCCSEEECCBCTT-SGGGHHHHHHHCSSCEEECTTCCHHHHHHHHHHTTCCCEEEECTTTTTHHH
T ss_pred CHHHHHHHHHHHh-hcCCCEEEcCCCcc-cHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 5677777776543 35666666544432 244456666666789883 3455667788999876665 8887765555
Q ss_pred HHHH
Q 006006 141 NIWQ 144 (665)
Q Consensus 141 ~aLq 144 (665)
++++
T Consensus 300 ~~~k 303 (400)
T 4dxk_A 300 EARK 303 (400)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 347
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=20.81 E-value=89 Score=25.30 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=23.9
Q ss_pred HHHHHhCCCCCCHHHHHhhhcccchhHHHHHHHH
Q 006006 246 RILELMNVPGLTRENVASHLQEINLQKFRLYLKR 279 (665)
Q Consensus 246 kILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FKK 279 (665)
+|.+++..-++|..++|..+|.+ .++++++.+.
T Consensus 17 ~l~~~r~~~glsq~~lA~~~gis-~~~is~~e~g 49 (91)
T 1x57_A 17 VIQQGRQSKGLTQKDLATKINEK-PQVIADYESG 49 (91)
T ss_dssp HHHHHHHTTTCCHHHHHHHHTSC-HHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHcC
Confidence 34455566799999999999974 5666666653
No 348
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=20.77 E-value=2.1e+02 Score=31.50 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCCH-HHHHHHHhcc-CCccEE--ecCchHHHHHHHHcCCCeEEe
Q 006006 67 AVALDILRERKGCFDVVLSDVHMPDMDG-FKLLEHIGLE-MDLPVI--TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 67 eEALelLre~k~~PDLVIlDI~MP~mDG-lELLe~Ir~~-~~IPVI--a~sd~e~a~kALe~GA~DYLl 131 (665)
.+.++.+.+.. +|+|.+|...+...+ +++++++++. +++||| ...+.+.+.++.++||+....
T Consensus 258 ~era~aLveaG--vd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 258 MTRIDALVKAS--VDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKV 324 (511)
T ss_dssp HHHHHHHHHTT--CSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhhc--cceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEE
Confidence 34444454444 999999988765444 4678888754 567888 456788899999999988774
No 349
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=20.72 E-value=2.4e+02 Score=28.46 Aligned_cols=98 Identities=10% Similarity=0.018 Sum_probs=56.6
Q ss_pred cEEEEEeCC-HHHHHHHHHHHHhCCCEEE-EEC--CHHHHHHHHHHcCCCceEEEEeCCCC--C------CCHHHHHHHH
Q 006006 34 LRVLVVDDD-ITCLRILEQMLRRCLYNVT-TCS--QAAVALDILRERKGCFDVVLSDVHMP--D------MDGFKLLEHI 101 (665)
Q Consensus 34 irVLIVDDD-~~ire~Lk~lL~~~gy~V~-tAs--ngeEALelLre~k~~PDLVIlDI~MP--~------mDGlELLe~I 101 (665)
...+|+=|- ......+...++..+..+. .+. +..+-++.+.+.. .+.|.+=-.++ + .+-.++++++
T Consensus 124 vdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~--~gfvY~vS~~GvTG~~~~~~~~~~~~v~~v 201 (267)
T 3vnd_A 124 VDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQG--EGYTYLLSRAGVTGTESKAGEPIENILTQL 201 (267)
T ss_dssp CCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHC--CSCEEESCCCCCC--------CHHHHHHHH
T ss_pred CCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhC--CCcEEEEecCCCCCCccCCcHHHHHHHHHH
Confidence 344444333 2334455566666665533 332 2345555555544 34444422222 1 1234677888
Q ss_pred hccCCccEE---ecCchHHHHHHHHcCCCeEEeCC
Q 006006 102 GLEMDLPVI---TDGRVSAVMRGIRHGACDYLIKP 133 (665)
Q Consensus 102 r~~~~IPVI---a~sd~e~a~kALe~GA~DYLlKP 133 (665)
|+..++|++ .-.+.+.+.+++..||+..+.-.
T Consensus 202 r~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGS 236 (267)
T 3vnd_A 202 AEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISGS 236 (267)
T ss_dssp HTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECH
Confidence 877788988 45678888889999999999864
No 350
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=20.68 E-value=60 Score=25.06 Aligned_cols=30 Identities=10% Similarity=0.031 Sum_probs=21.6
Q ss_pred HHHhCCCCCCHHHHHhhhcccchhHHHHHHH
Q 006006 248 LELMNVPGLTRENVASHLQEINLQKFRLYLK 278 (665)
Q Consensus 248 LeLL~~~~LtI~EVAs~VGYsD~qYF~k~FK 278 (665)
.+++...|+|..++|..+|.+ .++++++.+
T Consensus 16 ~~~r~~~glsq~~lA~~~gis-~~~i~~~e~ 45 (77)
T 2b5a_A 16 KKIRTQKGVSQEELADLAGLH-RTYISEVER 45 (77)
T ss_dssp HHHHHHTTCCHHHHHHHHTCC-HHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHCCC-HHHHHHHHC
Confidence 344445789999999999975 566666654
No 351
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=20.62 E-value=1.8e+02 Score=27.39 Aligned_cols=102 Identities=10% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHH-------HHHHHHhccC-----CccEE--e
Q 006006 46 LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF-------KLLEHIGLEM-----DLPVI--T 111 (665)
Q Consensus 46 re~Lk~lL~~~gy~V~tAsngeEALelLre~k~~PDLVIlDI~MP~mDGl-------ELLe~Ir~~~-----~IPVI--a 111 (665)
...+.+.+...+..+..+-+.....+.++......|.|+++-..|+.+|. +.++.+++.. ++|++ .
T Consensus 98 ~~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~G 177 (220)
T 2fli_A 98 IHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDG 177 (220)
T ss_dssp HHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred HHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHhhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEEC
Q ss_pred cCchHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHH
Q 006006 112 DGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVV 147 (665)
Q Consensus 112 ~sd~e~a~kALe~GA~DYLl-----KPv~~eEL~~aLq~Vl 147 (665)
--..+.+.++++.||+..+. +..++.+-.+.+++.+
T Consensus 178 GI~~~~~~~~~~~Gad~vvvGsai~~~~d~~~a~~~~~~~~ 218 (220)
T 2fli_A 178 GVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218 (220)
T ss_dssp SCCTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHh
No 352
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=20.60 E-value=1.6e+02 Score=26.54 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=31.6
Q ss_pred CCccEEEEEeCC--HHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHHcCCCceEEEE
Q 006006 31 PAGLRVLVVDDD--ITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLS 85 (665)
Q Consensus 31 P~girVLIVDDD--~~ire~Lk~lL~~~gy~V~-tAsngeEALelLre~k~~PDLVIl 85 (665)
+..++|.|||.| +..++.++ .|. ....+. ...+.++|.+.+++.+ .+.+|.
T Consensus 8 ~~~~~vaVvd~D~s~~s~~l~~-~l~-~~~~~~~~~~s~~ea~~~l~~g~--~~~~l~ 61 (156)
T 3cni_A 8 TVGQKVAIVREDTGTIAELAEK-ALG-NMVDIVYAGSDLKEAEEAVKKEK--APAIIV 61 (156)
T ss_dssp ---CEEEEEECCCSHHHHHHHH-HHH-TSSEEEEEESCHHHHHHHHHHHT--CSEEEE
T ss_pred CCCCcEEEEECCCCHHHHHHHH-Hhc-CcEEEEecCCCHHHHHHHHHcCC--eeEEEE
Confidence 466899999876 44444444 444 333322 2468999999999887 776654
No 353
>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}
Probab=20.46 E-value=1.4e+02 Score=31.22 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeE-EeCCCCHHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDY-LIKPIREEELK 140 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DY-LlKPv~~eEL~ 140 (665)
+.++|++.++... ..++..++--++.. -++.++++++...+||++ ..+.+.+.++++.|+.|+ ..|+....-+.
T Consensus 202 ~~~~a~~~~~~l~-~~~i~~iEqP~~~~-~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit 279 (384)
T 2pgw_A 202 SVHDAINMCRKLE-KYDIEFIEQPTVSW-SIPAMAHVREKVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQ 279 (384)
T ss_dssp CHHHHHHHHHHHG-GGCCSEEECCSCTT-CHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHH
T ss_pred CHHHHHHHHHHHH-hcCCCEEeCCCChh-hHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcchhhCCHH
Confidence 4466666655432 23444445434432 356666676666799983 336777888898886665 57875433333
No 354
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=20.39 E-value=6.3e+02 Score=25.32 Aligned_cols=44 Identities=9% Similarity=0.208 Sum_probs=30.8
Q ss_pred CCccEEe---cCchHHHHHHHHcCCCeEEeCC--CCHHHHHHHHHHHHH
Q 006006 105 MDLPVIT---DGRVSAVMRGIRHGACDYLIKP--IREEELKNIWQHVVR 148 (665)
Q Consensus 105 ~~IPVIa---~sd~e~a~kALe~GA~DYLlKP--v~~eEL~~aLq~Vlr 148 (665)
.++.+|+ ....+.+.+|++.|..=++-|| .+.++..+.++.+-+
T Consensus 65 ~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~ 113 (344)
T 3ezy_A 65 VDAVLVCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKK 113 (344)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4555552 3345667889999999999999 567787776665533
No 355
>3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum}
Probab=20.38 E-value=2.2e+02 Score=29.99 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHc--CCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHH
Q 006006 65 QAAVALDILRER--KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEE 138 (665)
Q Consensus 65 ngeEALelLre~--k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eE 138 (665)
+.++|++.++.. . .+++..+.==++..| ++-++++++...+||.+ ..+.....++++.|+.|++ .||.. .=
T Consensus 200 ~~~~A~~~~~~L~~~-~~~i~~iEeP~~~~d-~~~~~~l~~~~~iPIa~dEs~~~~~~~~~~i~~~a~d~v~~k~~~-GG 276 (389)
T 3s5s_A 200 TAGEALALVAHARRL-GADVALLEQPVPRDD-WDGMKEVTRRAGVDVAADESAASAEDVLRVAAERAATVVNIKLMK-GG 276 (389)
T ss_dssp CHHHHHHHHHHHHHT-TCEEEEEECCSCTTC-HHHHHHHHHHSSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHH-HH
T ss_pred CHHHHHHHHHHHhhC-CCCeEEEECCCCccc-HHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCCEEEecCCC-CC
Confidence 557777776654 3 367777775555333 45556666556788883 2345567788888877765 77766 55
Q ss_pred HHHHHH
Q 006006 139 LKNIWQ 144 (665)
Q Consensus 139 L~~aLq 144 (665)
|.++++
T Consensus 277 it~~~~ 282 (389)
T 3s5s_A 277 IAEALD 282 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655554
No 356
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=20.27 E-value=1.3e+02 Score=29.75 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=49.7
Q ss_pred HHHhCCCEEEEECCH---HHHHHHHHHcCCCceEEEEeCCCCCCCH-------HHHHHHHhccC-CccEE--ecCchHHH
Q 006006 52 MLRRCLYNVTTCSQA---AVALDILRERKGCFDVVLSDVHMPDMDG-------FKLLEHIGLEM-DLPVI--TDGRVSAV 118 (665)
Q Consensus 52 lL~~~gy~V~tAsng---eEALelLre~k~~PDLVIlDI~MP~mDG-------lELLe~Ir~~~-~IPVI--a~sd~e~a 118 (665)
.+++.+..+..+-+. .+.++.+... ..+|.|++=-.-|+.+| ++-++++++.. +++|. +--+.+.+
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~-g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~ti 187 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDT-NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETT 187 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTT-TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhc-CCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCeEEEECCCCHHHH
Confidence 666778877655443 3444444331 03898877655576554 55566665432 55554 44567788
Q ss_pred HHHHHcCCCeEEeC
Q 006006 119 MRGIRHGACDYLIK 132 (665)
Q Consensus 119 ~kALe~GA~DYLlK 132 (665)
.++.++||+-++.=
T Consensus 188 ~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 188 EISASHGANIIVAG 201 (227)
T ss_dssp HHHHHHTCCEEEES
T ss_pred HHHHHcCCCEEEEe
Confidence 89999999987754
No 357
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica}
Probab=20.24 E-value=1.2e+02 Score=33.13 Aligned_cols=80 Identities=13% Similarity=0.214 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CccEEec----CchHHHHHHHHcCCCeE-EeCCCCHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVITD----GRVSAVMRGIRHGACDY-LIKPIREEE 138 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~-~IPVIa~----sd~e~a~kALe~GA~DY-LlKPv~~eE 138 (665)
+.+++++++++.-+.++|+.+.==++..| ++-.++|+... .+||++. .+...+.++++.+++++ ++|+-..--
T Consensus 280 t~~elid~y~~lle~ypI~~IEDPl~~dD-~eg~a~Lt~~lg~i~IvGDEl~vTn~~~i~~~Ie~~a~n~IlIKvnqiGG 358 (441)
T 3qtp_A 280 DVDGLIAEYVDYGKHYPIASIEDPFAEDD-WAAWNKFTVEHGNFQIVGDDLLVTNPARVQMAMDKNACNSVLIKVNQIGT 358 (441)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEESCSCTTC-HHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECGGGTCC
T ss_pred CHHHHHHHHHHHhhhcceeeecCCCChHH-HHHHHHHHHhcCCceEEeccccccCHHHHHHHHHcCCCCEEEeccccccc
Confidence 45788877665322367888876666555 34445554444 5888843 35678889999998776 578866555
Q ss_pred HHHHHHH
Q 006006 139 LKNIWQH 145 (665)
Q Consensus 139 L~~aLq~ 145 (665)
|.++++.
T Consensus 359 ITEalka 365 (441)
T 3qtp_A 359 LTETFKT 365 (441)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 358
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=20.20 E-value=49 Score=24.78 Aligned_cols=33 Identities=6% Similarity=0.001 Sum_probs=23.9
Q ss_pred HHHHHHhCCCCCCHHHHHhhhcccchhHHHHHHH
Q 006006 245 KRILELMNVPGLTRENVASHLQEINLQKFRLYLK 278 (665)
Q Consensus 245 KkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FK 278 (665)
++|.+++...++|..++|..+|.+ .++++++.+
T Consensus 8 ~~l~~~r~~~g~s~~~lA~~~gis-~~~i~~~e~ 40 (68)
T 2r1j_L 8 ERIRARRKKLKIRQAALGKMVGVS-NVAISQWER 40 (68)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSC-HHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCC-HHHHHHHHc
Confidence 345555666789999999999975 566666654
No 359
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=20.17 E-value=44 Score=24.88 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=23.8
Q ss_pred HHHHHhCCCCCCHHHHHhhhcccchhHHHHHHH
Q 006006 246 RILELMNVPGLTRENVASHLQEINLQKFRLYLK 278 (665)
Q Consensus 246 kILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FK 278 (665)
+|.+++...|+|..++|..+|.+ .++++++.+
T Consensus 5 ~l~~~r~~~g~s~~~lA~~~gis-~~~i~~~e~ 36 (66)
T 2xi8_A 5 NLKLIREKKKISQSELAALLEVS-RQTINGIEK 36 (66)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTSC-HHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHc
Confidence 34556667899999999999975 566666654
No 360
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=20.14 E-value=61 Score=26.35 Aligned_cols=32 Identities=3% Similarity=-0.014 Sum_probs=24.4
Q ss_pred hHHHHHHhCCCCCCHHHHHhhhcccchhHHHHH
Q 006006 244 PKRILELMNVPGLTRENVASHLQEINLQKFRLY 276 (665)
Q Consensus 244 PKkILeLL~~~~LtI~EVAs~VGYsD~qYF~k~ 276 (665)
|.+|.++|..-|+|..++|..+|.+ .+.+++.
T Consensus 11 ~~ri~~~l~~~glT~~~LA~~~Gvs-~stls~~ 42 (74)
T 1neq_A 11 RADVIAGLKKRKLSLSALSRQFGYA-PTTLANA 42 (74)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHSSC-HHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHH
Confidence 3467777888999999999999975 4555544
No 361
>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP}
Probab=20.14 E-value=1e+02 Score=32.98 Aligned_cols=74 Identities=9% Similarity=0.001 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC-ccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHHH
Q 006006 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD-LPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEEL 139 (665)
Q Consensus 65 ngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~-IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eEL 139 (665)
+.++|+++++... .+++..++--++. +-++.+++|++... +||++ ..+...+.++++.|+.|++ .||....-|
T Consensus 241 ~~~eai~~~~~L~-~~~i~~iEqP~~~-~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi 318 (428)
T 3bjs_A 241 TMADARRVLPVLA-EIQAGWLEEPFAC-NDFASYREVAKITPLVPIAAGENHYTRFEFGQMLDAGAVQVWQPDLSKCGGI 318 (428)
T ss_dssp CHHHHHHHHHHHH-HTTCSCEECCSCT-TCHHHHHHHTTTCSSSCEEECTTCCSHHHHHHHHTTCCEEEECCBTTTSSCH
T ss_pred CHHHHHHHHHHHH-hcCCCEEECCCCc-cCHHHHHHHHHhCCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEeCccccCCH
Confidence 3455555544321 1333334433332 23556666665566 89883 3356778888988987775 688654344
Q ss_pred H
Q 006006 140 K 140 (665)
Q Consensus 140 ~ 140 (665)
.
T Consensus 319 t 319 (428)
T 3bjs_A 319 T 319 (428)
T ss_dssp H
T ss_pred H
Confidence 3
No 362
>4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A
Probab=20.11 E-value=1.7e+02 Score=30.52 Aligned_cols=78 Identities=12% Similarity=0.066 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCccEEe---cCchHHHHHHHHcCCCeEE-eCCCCHHHH
Q 006006 64 SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIT---DGRVSAVMRGIRHGACDYL-IKPIREEEL 139 (665)
Q Consensus 64 sngeEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa---~sd~e~a~kALe~GA~DYL-lKPv~~eEL 139 (665)
-+.++|++.++... .+++..+.-=++..| ++-+++|++...+||.+ ..+.....++++.|+.|++ .|+....=|
T Consensus 199 ~~~~~A~~~~~~l~-~~~i~~iEeP~~~~d-~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGi 276 (378)
T 4hpn_A 199 YTVTEAITLGDRAA-GFGIDWFEEPVVPEQ-LDAYARVRAGQPIPVAGGETWHGRYGMWQALSAGAVDILQPDLCGCGGF 276 (378)
T ss_dssp CCHHHHHHHHHHHG-GGCCSCEECCSCTTC-HHHHHHHHHHSSSCEEECTTCCHHHHHHHHHHTTCCSEECCBTTTTTHH
T ss_pred cCHHHHHHHHhhhh-hcccchhhcCCCccc-hhhhHHHHhhCCceeeCCcCccchHhHHHHHHcCCCCEEeeCCeeCCCh
Confidence 36678888877653 367666665454433 55566777677889883 3345567788999998887 677665445
Q ss_pred HHHH
Q 006006 140 KNIW 143 (665)
Q Consensus 140 ~~aL 143 (665)
.+++
T Consensus 277 t~~~ 280 (378)
T 4hpn_A 277 SEIQ 280 (378)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 4443
No 363
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=20.11 E-value=1.5e+02 Score=31.58 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=56.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH--HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCcc
Q 006006 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQA--AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (665)
Q Consensus 32 ~girVLIVDDD~~ire~Lk~lL~~~gy~V~tAsng--eEALelLre~k~~PDLVIlDI~MP~mDGlELLe~Ir~-~~~IP 108 (665)
.++.|++||.++...+.++ ..++.+.. .++ .+.|+.+.-. ..|+||+-+.-+ ..-+.++..++. .+++.
T Consensus 26 ~g~~vvvId~d~~~v~~~~----~~g~~vi~-GDat~~~~L~~agi~--~A~~viv~~~~~-~~n~~i~~~ar~~~p~~~ 97 (413)
T 3l9w_A 26 SGVKMVVLDHDPDHIETLR----KFGMKVFY-GDATRMDLLESAGAA--KAEVLINAIDDP-QTNLQLTEMVKEHFPHLQ 97 (413)
T ss_dssp TTCCEEEEECCHHHHHHHH----HTTCCCEE-SCTTCHHHHHHTTTT--TCSEEEECCSSH-HHHHHHHHHHHHHCTTCE
T ss_pred CCCCEEEEECCHHHHHHHH----hCCCeEEE-cCCCCHHHHHhcCCC--ccCEEEECCCCh-HHHHHHHHHHHHhCCCCe
Confidence 4678999999987766554 34655532 333 3444444222 379988866321 223444555554 36677
Q ss_pred EE-ecCchHHHHHHHHcCCCeEEe
Q 006006 109 VI-TDGRVSAVMRGIRHGACDYLI 131 (665)
Q Consensus 109 VI-a~sd~e~a~kALe~GA~DYLl 131 (665)
|| -..+.+.+....++||+..+.
T Consensus 98 Iiara~~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 98 IIARARDVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp EEEEESSHHHHHHHHHTTCSSCEE
T ss_pred EEEEECCHHHHHHHHHCCCCEEEC
Confidence 87 445677777788999998665
No 364
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=20.07 E-value=64 Score=24.62 Aligned_cols=31 Identities=19% Similarity=0.039 Sum_probs=21.7
Q ss_pred HHHHhCCCCCCHHHHHhhhcccchhHHHHHHH
Q 006006 247 ILELMNVPGLTRENVASHLQEINLQKFRLYLK 278 (665)
Q Consensus 247 ILeLL~~~~LtI~EVAs~VGYsD~qYF~k~FK 278 (665)
|.+++...|+|..++|..+|.+ .++++++.+
T Consensus 18 l~~~r~~~g~s~~~lA~~~gis-~~~i~~~e~ 48 (74)
T 1y7y_A 18 LRELRTAKGLSQETLAFLSGLD-RSYVGGVER 48 (74)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCC-HHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHC
Confidence 3344555789999999999975 555555543
No 365
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=20.06 E-value=1.6e+02 Score=29.15 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=38.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCccEEecC-----ch--HHHHHHHHcCCCeEEeCCCC--HHHHHHHHHHH
Q 006006 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVITDG-----RV--SAVMRGIRHGACDYLIKPIR--EEELKNIWQHV 146 (665)
Q Consensus 80 PDLVIlDI~MP~mDGlELLe~Ir~~~~IPVIa~s-----d~--e~a~kALe~GA~DYLlKPv~--~eEL~~aLq~V 146 (665)
.|++|+-- + |..+++.+. ..+|+|+.. +. ..+....+.|+ +++..|-+ .++|.+++.++
T Consensus 255 ad~~v~~s---g--~~~~~EAma--~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 255 ADVVVCRS---G--ALTVSEIAA--AGLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp CSEEEECC---C--HHHHHHHHH--HTCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred CCEEEECC---c--hHHHHHHHH--hCCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 46666642 2 777777774 357888322 11 12334566777 99999865 89998888765
Done!