BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006008
(665 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M2T1|AP3BA_ARATH AP3-complex subunit beta-A OS=Arabidopsis thaliana GN=AP3BA PE=2
SV=2
Length = 987
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/666 (53%), Positives = 464/666 (69%), Gaps = 35/666 (5%)
Query: 1 MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRS 60
+ TC++GLLAL+RQE D ES +GEA VL+Q+++SI+++I++DP HEKV+IQLFRS
Sbjct: 349 IPTTCLDGLLALVRQESFAGDFESADGEAGVLVQAVMSIQTMIERDPLRHEKVLIQLFRS 408
Query: 61 LDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV 120
LDSIKV AR IIWMVG Y S+G IPRMLTT+ KYLAW FKSEA ETKLQILNT KV
Sbjct: 409 LDSIKVAAARATIIWMVGVYCSLGHIIPRMLTTITKYLAWSFKSEASETKLQILNTIAKV 468
Query: 121 LLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVP-EETNALQE 179
L+ A+ GD + R+ Y+ EL E DL+YD+RDR RF KKL S L S P E++ A QE
Sbjct: 469 LISAEAGDFHMLKRIVVYVFELGEYDLSYDIRDRTRFLKKLLSCKLASHEPAEDSVASQE 528
Query: 180 NKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDL 239
N + +VE +F ++ + +++RFYLPGSLSQIVLHAAPGYEPLPKPCS + ++
Sbjct: 529 N--IAAHVVEHVFGRKLKSVSPITLHNRFYLPGSLSQIVLHAAPGYEPLPKPCSFVYEEQ 586
Query: 240 GQFSNSIDRTTALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDS 299
Q S+ +D+ + GS ++S + DE S+YDS+ S SD S GD
Sbjct: 587 DQLSD-LDKQREAAADLDGSE-------ESSETGDENGSSDYDSESS--NGSDFSSEGDE 636
Query: 300 ASEGDRNCD---PLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSP 356
+ + D PLIQIS+ ++ D E + S+RAL+ WLD+QP +S+
Sbjct: 637 RTVSNDANDPAAPLIQISETSVSA------------DQEELRSRRALDLWLDDQPSTSNQ 684
Query: 357 SASEQIQVRQSSARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCL 416
+ S + S A+ISIG++G +VK KSY+L+DP NG+GLKV Y+F SE S +SP VC+
Sbjct: 685 TPSALNSNQSSYAKISIGDVGSRVKPKSYSLVDPGNGSGLKVDYAFLSEVSNVSPLHVCV 744
Query: 417 ETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEP 476
E FEN S+E + EV L DEES K D ++ TL A++ S +++PTL+PMEEI+ LEP
Sbjct: 745 EVLFENSSAEPILEVNLEDEESMKVADSSEQTLVGKANA--SYNNIPTLIPMEEISCLEP 802
Query: 477 GQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLP 536
Q+ KR+++VRFHHHLLP++L LH N KK+PVKLRPD+GY +KP M +E F+ ESRLP
Sbjct: 803 HQSTKRLIQVRFHHHLLPMRLTLHYNEKKVPVKLRPDLGYLVKPFSMSIEEFLATESRLP 862
Query: 537 GMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAA 596
GMFEY+R CTF DH+ D T+ KDK+L ICES+ K+LSN+N+ LVSVD+PVA
Sbjct: 863 GMFEYSRRCTFDDHVK--DSRTENG---KDKFLSICESITLKVLSNSNLHLVSVDLPVAN 917
Query: 597 KFDDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVN 656
+DA+GL LRFSS+IL + +P LITITVEGKC+E L ++ K+NCEETVFGLNLLNRI N
Sbjct: 918 SLEDATGLRLRFSSKILSSEIPLLITITVEGKCTEVLNLTVKINCEETVFGLNLLNRIAN 977
Query: 657 FLVESS 662
F+VE S
Sbjct: 978 FMVEPS 983
>sp|Q13367|AP3B2_HUMAN AP-3 complex subunit beta-2 OS=Homo sapiens GN=AP3B2 PE=1 SV=2
Length = 1082
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 122/235 (51%), Gaps = 45/235 (19%)
Query: 3 NTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLD 62
+TC+ GL+ L+ N + V+ +S++ IK +++ P+ H ++I L + D
Sbjct: 445 DTCLNGLVQLL-----------SNRDELVVAESVVVIKKLLQMQPAQHGEIIKHLAKLTD 493
Query: 63 SIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLL 122
+I+VP AR I+W++GEY +PR+ VL+ +A F +E KLQ++N K+ L
Sbjct: 494 NIQVPMARASILWLIGEYCE---HVPRIAPDVLRKMAKSFTAEEDIVKLQVINLAAKLYL 550
Query: 123 C-AKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVP-EETNALQEN 180
+K + T Y+L LA+ D NYD+RDRARF ++L VP E+ AL +
Sbjct: 551 TNSKQTKLLT-----QYVLSLAKYDQNYDIRDRARFTRQLI-------VPSEQGGALSRH 598
Query: 181 -KDL-----PLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLP 229
K L P ++E F+ + D F L GSLS ++ A GY+ LP
Sbjct: 599 AKKLFLAPKPAPVLESSFKDR----------DHFQL-GSLSHLLNAKATGYQELP 642
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 89/230 (38%), Gaps = 44/230 (19%)
Query: 373 IGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVT 432
+ +GRQ LL G GL V Y+FS + + P +V + F N S +
Sbjct: 854 VSGVGRQ------ELLHRVAGEGLAVDYTFSRQPFSGDPHMVSVHIHFSNSSDTPI---- 903
Query: 433 LVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHL 492
K L + L S + EI SL PG++ ++ + F
Sbjct: 904 -------KGLHVGTPKLPAGIS----------IQEFPEIESLAPGESATAVMGINFCDST 946
Query: 493 LPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTF----- 547
L ++ V ++P +G + PV M F + + +L GM E
Sbjct: 947 QAANFQLCTQTRQFYVSIQPPVGELMAPVFMSENEFKKEQGKLMGMNEITEKLMLPDTCR 1006
Query: 548 TDHLGEVDKDTDESSLLK------DKYLVICESLASKMLSNANIFLVSVD 591
+DH+ V K T ++L + D+Y A + L+ ++ L+++D
Sbjct: 1007 SDHI-VVQKVTATANLGRVPCGTSDEY-----RFAGRTLTGGSLVLLTLD 1050
>sp|Q9JME5|AP3B2_MOUSE AP-3 complex subunit beta-2 OS=Mus musculus GN=Ap3b2 PE=1 SV=2
Length = 1082
Score = 102 bits (255), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 122/235 (51%), Gaps = 45/235 (19%)
Query: 3 NTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLD 62
+TC+ GL+ L+ N + V+ +S++ IK +++ P+ H ++I L + D
Sbjct: 445 DTCLNGLVQLL-----------SNRDELVVAESVVVIKKLLQMQPAQHGEIIKHLAKLTD 493
Query: 63 SIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLL 122
+I+VP AR I+W++GEY +P++ VL+ +A F +E KLQ++N K+ L
Sbjct: 494 NIQVPMARASILWLIGEYCE---HVPKIAPDVLRKMAKSFTAEEDIVKLQVINLAAKLYL 550
Query: 123 C-AKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVP-EETNALQEN 180
+K + T Y+L LA+ D NYD+RDRARF ++L VP E+ AL +
Sbjct: 551 TNSKQTKLLT-----QYVLSLAKYDQNYDIRDRARFTRQLI-------VPSEQGGALSRH 598
Query: 181 -KDL-----PLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLP 229
K L P ++E F+ + D F L GSLS ++ A GY+ LP
Sbjct: 599 AKKLFLAPKPAPILESSFKDR----------DHFQL-GSLSHLLNAKATGYQELP 642
>sp|Q9Z1T1|AP3B1_MOUSE AP-3 complex subunit beta-1 OS=Mus musculus GN=Ap3b1 PE=1 SV=2
Length = 1105
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 43/232 (18%)
Query: 1 MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRS 60
+ +TC+ GL+ L+ N + V+ +S++ IK +++ P+ H ++I + +
Sbjct: 439 VTDTCLNGLVCLL-----------SNRDEIVVAESVVVIKKLLQMQPAQHGEIIRHMAKL 487
Query: 61 LDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV 120
LDSI VP AR I+W++GE ++P++ VL+ +A F SE KLQILN K+
Sbjct: 488 LDSITVPVARASILWLIGENCE---RVPKIAPDVLRKMAKSFTSEDDLVKLQILNLAAKL 544
Query: 121 LLCAKGGDMWTITRLFS-YLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQE 179
L T+L + Y+L L + D NYD+RDR RF ++L N E++ AL +
Sbjct: 545 YLTNSKQ-----TKLLTQYILNLGKYDQNYDIRDRTRFIRQLIVPN------EKSGALSK 593
Query: 180 NKD------LPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGY 225
P L+E F+ + DRF L G+LS + A GY
Sbjct: 594 YAKKIFLAPKPAPLLESPFKDR----------DRFQL-GTLSHTLNIKASGY 634
>sp|Q32PG1|AP3B1_BOVIN AP-3 complex subunit beta-1 OS=Bos taurus GN=AP3B1 PE=2 SV=1
Length = 1084
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 128/278 (46%), Gaps = 53/278 (19%)
Query: 1 MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRS 60
+++TC+ GL+ L+ N + V+ +S++ IK +++ P H ++I + +
Sbjct: 438 VSDTCLNGLVCLL-----------SNRDEIVVAESVVVIKKLLQMQPMQHGEIIKHMAKL 486
Query: 61 LDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV 120
LDSI VP AR I+W++GE ++P++ VL+ A F SE KLQILN K+
Sbjct: 487 LDSITVPVARASILWLIGENCE---RVPKIAPDVLRKTAKSFTSEDDLVKLQILNLGAKL 543
Query: 121 LLCAKGGDMWTITRLFS-YLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQE 179
L T+L + Y+L L + D NYD+RDR RF ++L N E++ AL +
Sbjct: 544 YLTNSKQ-----TKLLTQYILNLGKYDQNYDIRDRTRFIRQLIVPN------EKSGALSK 592
Query: 180 NKDLPLVLVECIFRKQENLAASE-PINDRFYLP-GSLSQIVLHAAPGY-------EPLPK 230
+ IF Q+ E P DR + G+LS + A GY E P
Sbjct: 593 -------YAKKIFLAQKPAPLLESPFKDRDHFQLGTLSHTLNTKATGYLELSNWPEVAPD 645
Query: 231 PCSSLCDDLGQFSNSIDRTTALGEEWTGSSSNGTDDPD 268
P + L +EWT + ++PD
Sbjct: 646 PSVRNVE-----------VIELAKEWTPAGKAKKENPD 672
>sp|Q7YRF1|AP3B1_CANFA AP-3 complex subunit beta-1 OS=Canis familiaris GN=AP3B1 PE=2 SV=1
Length = 1091
Score = 95.9 bits (237), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 35/228 (15%)
Query: 1 MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRS 60
+ +TC+ GL+ L+ N + V+ +S++ IK +++ P+ H ++I + +
Sbjct: 438 VTDTCLSGLVCLL-----------SNRDEIVVAESVVVIKKLLQMQPAQHGEIIKHMAKL 486
Query: 61 LDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV 120
LDSI VP AR I+W++GE ++P++ VL+ +A F +E KLQILN K+
Sbjct: 487 LDSITVPVARASILWLIGENCE---RVPKIAPDVLRKMAKSFTNEDDLVKLQILNLGAKL 543
Query: 121 LLCAKGGDMWTITRLFS-YLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQE 179
L T+L + Y+L L + D NYD+RDR RF ++L N E++ AL +
Sbjct: 544 YLTNSKQ-----TKLLTQYILNLGKYDQNYDIRDRTRFIRQLIVPN------EKSGALSK 592
Query: 180 NKDLPLVLVECIFRKQENLAASE-PINDRFYLP-GSLSQIVLHAAPGY 225
+ IF Q+ E P DR + G+LS + A GY
Sbjct: 593 -------YAKKIFLAQKPAPLLESPFKDRDHFQLGTLSHTLNTKAIGY 633
>sp|O00203|AP3B1_HUMAN AP-3 complex subunit beta-1 OS=Homo sapiens GN=AP3B1 PE=1 SV=3
Length = 1094
Score = 95.9 bits (237), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 112/226 (49%), Gaps = 31/226 (13%)
Query: 1 MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRS 60
+ +TC+ GL+ L+ N + V+ +S++ IK +++ P+ H ++I + +
Sbjct: 438 VTDTCLNGLVCLL-----------SNRDEIVVAESVVVIKKLLQMQPAQHGEIIKHMAKL 486
Query: 61 LDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV 120
LDSI VP AR I+W++GE ++P++ VL+ +A F SE KLQILN K+
Sbjct: 487 LDSITVPVARASILWLIGENCE---RVPKIAPDVLRKMAKSFTSEDDLVKLQILNLGAKL 543
Query: 121 LLCAKGGDMWTITRLFS-YLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQE 179
L T+L + Y+L L + D NYD+RDR RF ++L N+ S +
Sbjct: 544 YLTNSKQ-----TKLLTQYILNLGKYDQNYDIRDRTRFIRQLIVPNVKSGALSKYAKKIF 598
Query: 180 NKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGY 225
P L+E F+ + D F L G+LS + A GY
Sbjct: 599 LAQKPAPLLESPFKDR----------DHFQL-GTLSHTLNIKATGY 633
>sp|Q556J8|AP3B_DICDI AP-3 complex subunit beta OS=Dictyostelium discoideum GN=ap3b-1
PE=3 SV=1
Length = 1108
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 38/201 (18%)
Query: 50 HEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVET 109
++ +I+ L + LD+++VP AR I+W++GEY ++P + V + L F E
Sbjct: 507 YDNIILHLSKLLDTLQVPSARASIVWVIGEYC---YRVPLVAPDVFRKLVKSFSDEHESV 563
Query: 110 KLQILNTTIKVLL------------------CAKGGDMWTITRLFSYLLELAECDLNYDV 151
KL+ LN K+ + IT +F Y+L LA+ D NYD+
Sbjct: 564 KLETLNLGSKLYVQFTDNNSTTTTDNSIPNEFKNERTKEKITLMFQYVLNLAKFDQNYDI 623
Query: 152 RDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPIND---RF 208
RD +R K + + E T ++ N ++ I Q+ + I++ RF
Sbjct: 624 RDNSRMLKHFYFNT------ENTQSINSN-------IKQIVINQKPIPTETSISEDRQRF 670
Query: 209 YLPGSLSQIVLHAAPGYEPLP 229
L GSLS IV H A GY LP
Sbjct: 671 TL-GSLSHIVNHTALGYTALP 690
Score = 41.6 bits (96), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 25/150 (16%)
Query: 376 IGRQVKAKSYTLLDPANGNGLKVYYSF----SSEASTISPQLVCLETFFENCSSETMSEV 431
I K+ LL P GL + Y F +E + P+ ++ +N S ET +++
Sbjct: 845 INSTTKSVKKILLKPTISGGLSIDYCFIRIRDNEEFSCQPRYNIIQLNIKNQSDETFTDI 904
Query: 432 TLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHH 491
+++++ +L +D+ P+E S+EP Q +++ + V F+
Sbjct: 905 SIINK------------------NLIDGADISEFDPIE---SIEPNQAIQKQIYVLFNST 943
Query: 492 LLPLKLALHCNGKKLPVKLRPDIGYFIKPV 521
K + N PV L P IG + P+
Sbjct: 944 SQSCKFEISFNKGNFPVTLTPIIGELLIPI 973
>sp|O13939|AP3B_SCHPO AP-3 complex subunit beta OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=apl6 PE=1 SV=1
Length = 745
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 107/207 (51%), Gaps = 31/207 (14%)
Query: 31 VLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRM 90
++ ++ S++ +I DP E + L + ++++VP A+ + +W++ E+ + IPR+
Sbjct: 420 IVTEAASSLRLLIHNDPK--EIYLQYLAATYETLEVPRAKSVTLWLISEHILI---IPRL 474
Query: 91 LTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCA----KGGDMWT----ITRLFSYLLEL 142
+ VL+ F E +E K QIL ++++ + + K D+ + ++ LF+Y+L L
Sbjct: 475 VPDVLRIAVKTFADETLEVKYQILELSVRLYVLSHSEEKQNDLESRDDVVSLLFNYVLSL 534
Query: 143 AECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASE 202
D++YD+RDRARF+K+L S + E T +++E Q+ + AS
Sbjct: 535 IHFDMSYDLRDRARFYKELAS----TPSSEFTRR---------IVLESKGNSQKEIIAS- 580
Query: 203 PINDRFYLPGSLSQIVLHAAPGYEPLP 229
R Y G+ S + GYEP+P
Sbjct: 581 ----RDYCIGTASLCLNEDVMGYEPIP 603
>sp|Q759E2|AP3B_ASHGO AP-3 complex subunit beta OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APL6 PE=3 SV=2
Length = 781
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 13/145 (8%)
Query: 28 EADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKV-PEARVMIIWMVGEYSSVGVK 86
+ +V I ++S+I++DP H +++L + L + + P A+ IIW++GEY V
Sbjct: 463 DKEVTASQINVLRSLIQKDPIKHIATVVKLSKMLSNHDLLPSAKAPIIWLLGEYVQVE-- 520
Query: 87 IPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVL---LCAKGGDMW------TITRLFS 137
PR+ VL+ L F E +LQILN K+L + + GDM I ++F
Sbjct: 521 -PRICPDVLRRLLPQFSKEHAHVRLQILNLAAKLLSHDVDSYSGDMEYDIGTSRIGQMFE 579
Query: 138 YLLELAECDLNYDVRDRARFFKKLF 162
L+LA+ D YDVRDRAR +F
Sbjct: 580 AALQLAKFDDEYDVRDRARMLASIF 604
>sp|Q10567|AP1B1_HUMAN AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1B1 PE=1 SV=2
Length = 949
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 20/163 (12%)
Query: 2 ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSL 61
A CV LL LI+ ++ V+ ++I+ IK I ++ P+ +E VI L +L
Sbjct: 388 AERCVSTLLDLIQTKV-----------NYVVQEAIVVIKDIFRKYPNKYESVIATLCENL 436
Query: 62 DSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVL 121
DS+ PEAR +IW+VGEY+ +L + L+ F E+ + +LQ+L +K+
Sbjct: 437 DSLDEPEARAAMIWIVGEYAERIDNADELLESFLE----GFHDESTQVQLQLLTAIVKLF 492
Query: 122 LCAKGGDMWTITRLFSYLLELAECDL-NYDVRDRARFFKKLFS 163
L L +L LA D N D+RDR + +L S
Sbjct: 493 LKKPT----ETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLS 531
>sp|O35643|AP1B1_MOUSE AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=2
Length = 943
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 20/163 (12%)
Query: 2 ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSL 61
A CV LL LI+ ++ V+ ++I+ IK I ++ P+ +E VI L +L
Sbjct: 388 AERCVSTLLDLIQTKV-----------NYVVQEAIVVIKDIFRKYPNKYESVIATLCENL 436
Query: 62 DSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVL 121
DS+ PEAR +IW+VGEY+ +L + L+ F E+ + +LQ+L +K+
Sbjct: 437 DSLDEPEARAAMIWIVGEYAERIDNADELLESFLE----GFHDESTQVQLQLLTAIVKLF 492
Query: 122 LCAKGGDMWTITRLFSYLLELAECDL-NYDVRDRARFFKKLFS 163
L L +L LA D N D+RDR + +L S
Sbjct: 493 LKKPT----ETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLS 531
>sp|P52303|AP1B1_RAT AP-1 complex subunit beta-1 OS=Rattus norvegicus GN=Ap1b1 PE=1 SV=1
Length = 949
Score = 66.2 bits (160), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 20/163 (12%)
Query: 2 ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSL 61
A CV LL LI+ ++ V+ ++I+ IK I ++ P+ +E VI L +L
Sbjct: 388 AERCVSTLLDLIQTKV-----------NYVVQEAIVVIKDIFRKYPNKYESVIATLCENL 436
Query: 62 DSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVL 121
DS+ PEAR +IW+VGEY+ +L + L F E+ + +LQ+L +K+
Sbjct: 437 DSLDEPEARAAMIWIVGEYAERIDNADELLESFLD----GFHDESTQVQLQLLTAIVKLF 492
Query: 122 LCAKGGDMWTITRLFSYLLELAECDL-NYDVRDRARFFKKLFS 163
L L +L LA D N D+RDR + +L S
Sbjct: 493 LKKPT----ETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLS 531
>sp|Q9SUS3|APBLB_ARATH Beta-adaptin-like protein B OS=Arabidopsis thaliana GN=BETAB-AD
PE=1 SV=1
Length = 894
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 19/163 (11%)
Query: 2 ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSL 61
A C+ LL LI+ ++ V+ ++II IK I ++ P+ +E +I L SL
Sbjct: 388 AERCISVLLELIKIKV-----------NYVVQEAIIVIKDIFRRYPNTYESIIATLCESL 436
Query: 62 DSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVL 121
D++ PEA+ +IW++GEY+ +L + L+ F E + +LQ+L T+K+
Sbjct: 437 DTLDEPEAKASMIWIIGEYAERIDNADELLESFLE----NFPEEPAQVQLQLLTATVKLF 492
Query: 122 LCAKG-GDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFS 163
L G I + + E D N D+RDRA + +L S
Sbjct: 493 LKKPTEGPQQMIQVVLNN--ATVETD-NPDLRDRAYIYWRLLS 532
>sp|O81742|APBLC_ARATH Beta-adaptin-like protein C OS=Arabidopsis thaliana GN=BETAC-AD
PE=1 SV=2
Length = 893
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 19/165 (11%)
Query: 2 ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSL 61
A C+ LL LI+ ++ V+ ++II IK I ++ P+ +E +I L SL
Sbjct: 388 AERCISVLLELIKIKV-----------NYVVQEAIIVIKDIFRRYPNTYESIIATLCESL 436
Query: 62 DSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVL 121
D++ PEA+ +IW++GEY+ +L + L+ F E + +LQ+L T+K+
Sbjct: 437 DTLDEPEAKASMIWIIGEYAERIDNADELLESFLE----NFPEEPAQVQLQLLTATVKLF 492
Query: 122 LCAKG-GDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHN 165
L G I + + E D N D+RDRA + +L S +
Sbjct: 493 LKKPTEGPQQMIQVVLNN--ATVETD-NPDLRDRAYIYWRLLSTD 534
>sp|P62944|AP2B1_RAT AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1
Length = 937
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 18/162 (11%)
Query: 2 ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSL 61
A CV LL LI+ ++ V+ ++I+ I+ I ++ P+ +E +I L +L
Sbjct: 388 AERCVSTLLDLIQTKV-----------NYVVQEAIVVIRDIFRKYPNKYESIIATLCENL 436
Query: 62 DSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVL 121
DS+ P+AR +IW+VGEY+ +L + L+ F E+ + +L +L +K+
Sbjct: 437 DSLDEPDARAAMIWIVGEYAERIDNADELLESFLE----GFHDESTQVQLTLLTAIVKLF 492
Query: 122 LCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFS 163
L + ++ S L + D N D+RDR + +L S
Sbjct: 493 LKKPSETQELVQQVLS--LATQDSD-NPDLRDRGYIYWRLLS 531
>sp|P63010|AP2B1_HUMAN AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1
Length = 937
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 18/162 (11%)
Query: 2 ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSL 61
A CV LL LI+ ++ V+ ++I+ I+ I ++ P+ +E +I L +L
Sbjct: 388 AERCVSTLLDLIQTKV-----------NYVVQEAIVVIRDIFRKYPNKYESIIATLCENL 436
Query: 62 DSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVL 121
DS+ P+AR +IW+VGEY+ +L + L+ F E+ + +L +L +K+
Sbjct: 437 DSLDEPDARAAMIWIVGEYAERIDNADELLESFLE----GFHDESTQVQLTLLTAIVKLF 492
Query: 122 LCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFS 163
L + ++ S L + D N D+RDR + +L S
Sbjct: 493 LKKPSETQELVQQVLS--LATQDSD-NPDLRDRGYIYWRLLS 531
>sp|P63009|AP2B1_BOVIN AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 PE=1 SV=2
Length = 937
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 18/162 (11%)
Query: 2 ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSL 61
A CV LL LI+ ++ V+ ++I+ I+ I ++ P+ +E +I L +L
Sbjct: 388 AERCVSTLLDLIQTKV-----------NYVVQEAIVVIRDIFRKYPNKYESIIATLCENL 436
Query: 62 DSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVL 121
DS+ P+AR +IW+VGEY+ +L + L+ F E+ + +L +L +K+
Sbjct: 437 DSLDEPDARAAMIWIVGEYAERIDNADELLESFLE----GFHDESTQVQLTLLTAIVKLF 492
Query: 122 LCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFS 163
L + ++ S L + D N D+RDR + +L S
Sbjct: 493 LKKPSETQELVQQVLS--LATQDSD-NPDLRDRGYIYWRLLS 531
>sp|Q9DBG3|AP2B1_MOUSE AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1
Length = 937
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 18/162 (11%)
Query: 2 ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSL 61
A CV LL LI+ ++ V+ ++I+ I+ I ++ P+ +E +I L +L
Sbjct: 388 AERCVSTLLDLIQTKV-----------NYVVQEAIVVIRDIFRKYPNKYESIIATLCENL 436
Query: 62 DSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVL 121
DS+ P+AR +IW+VGEY+ +L + L+ F E+ + +L +L +K+
Sbjct: 437 DSLDEPDARAAMIWIVGEYAERIDNADELLESFLE----GFHDESTQVQLTLLTAIVKLF 492
Query: 122 LCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFS 163
L + ++ S L + D N D+RDR + +L S
Sbjct: 493 LKKPSETQELVQQVLS--LATQDSD-NPDLRDRGYIYWRLLS 531
>sp|Q08DS7|AP1B1_BOVIN AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1 PE=2 SV=1
Length = 951
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 18/162 (11%)
Query: 2 ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSL 61
A CV LL LI+ ++ V+ ++I+ I+ I ++ P+ +E +I L +L
Sbjct: 388 AERCVSTLLDLIQTKV-----------NYVVQEAIVVIRDIFRKYPNKYESIIATLCENL 436
Query: 62 DSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVL 121
DS+ P+AR +IW+VGEY+ +L + L+ F E+ + +L +L +K+
Sbjct: 437 DSLDEPDARAAMIWIVGEYAERIDNADELLESFLE----GFHDESTQVQLTLLTAIVKLF 492
Query: 122 LCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFS 163
L + ++ S L + D N D+RDR + +L S
Sbjct: 493 LKKPSETQELVQQVLS--LATQDSD-NPDLRDRGYIYWRLLS 531
>sp|Q54X82|AP1B_DICDI AP-1 complex subunit beta OS=Dictyostelium discoideum GN=ap1b1 PE=3
SV=1
Length = 942
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 5 CVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSI 64
C++ LL LI+ ++ V+ ++II IK I ++ P+ +E +I L +L+S+
Sbjct: 389 CIQVLLDLIQTKV-----------NYVVQEAIIVIKDIFRKYPNKYEGIIATLCANLESL 437
Query: 65 KVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCA 124
PEA+ +IW++GEY+ +L + L+ FK E + +LQ+L + +K+ L
Sbjct: 438 DEPEAKASMIWIIGEYAERIDNAHELLNSFLE----GFKDENSQVQLQLLTSIVKLFLKR 493
Query: 125 KGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFS 163
+ + + L E D N D+RDR + +L S
Sbjct: 494 PKDAQQMVQTVLN--LSTQESD-NPDLRDRGFVYWRLLS 529
>sp|P46682|AP3B_YEAST AP-3 complex subunit beta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APL6 PE=1 SV=2
Length = 809
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 26/168 (15%)
Query: 18 LTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQL--FRSLDSIKVPEARVMIIW 75
L +ES N A VL + I+ +++++P+ H ++I +L ++ + AR I+W
Sbjct: 454 LIDHMESHNLSASVLDAYVNVIRMLVQKNPTKHLRIIFKLADLLTVQTSLADNARAGIVW 513
Query: 76 MVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVL---------LCAKG 126
+ GE +S+ KI VL+ L F +E ET+ QIL + K+L G
Sbjct: 514 LFGEIASIEFKI---CPDVLRRLIQNFSNEGPETRCQILVLSAKLLSYDIDNFKQAQVTG 570
Query: 127 GDMWT------------ITRLFSYLLELAECDLNYDVRDRARFFKKLF 162
+ I+++++ +L LA+ D +D+RDRAR LF
Sbjct: 571 SEENNQNPPYYDFSGSRISQMYNAVLYLAKYDDEFDIRDRARMISSLF 618
>sp|O43005|AP2B_SCHPO AP-2 complex subunit beta OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=apl1 PE=3 SV=1
Length = 677
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 14 RQELLTSDIESGNGEADVLIQ-SIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVM 72
+ + + S IE N + +IQ ++I I+ I+++ P ++ ++ L+ +LDS+ P+A+
Sbjct: 388 KNDCIDSLIELMNTKVTYVIQEAVIVIRDILRKYPGSYKSLVPILYENLDSLDEPDAKSA 447
Query: 73 IIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI 132
+IW++G+Y+ +I +T + YL F E +E +L +L IKV L +
Sbjct: 448 VIWILGQYAE---EIEDSITLLNDYLKGFF-DEPLEIQLTLLTAVIKVFLKKPTAAADMV 503
Query: 133 TRLFSYLLELAECDLNYDVRDRARFFKKLFSHN 165
T + + + + D+RDR + ++ S N
Sbjct: 504 TNVLQWCTDEVN---DPDLRDRGIIYSRMLSAN 533
>sp|O43079|AP1B1_SCHPO AP-1 complex subunit beta-1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=apl2 PE=1 SV=1
Length = 683
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 92/175 (52%), Gaps = 13/175 (7%)
Query: 32 LIQSI-ISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRM 90
++Q + + +++++++ P + ++ L R ++ + P AR + W++GE+S V ++
Sbjct: 408 MVQEVTVVMETVLRKYPQKIDLLLPYLSRVIEELGDPRARSSMAWILGEFSHVIPTSSKL 467
Query: 91 LTTVLKYLAWCFKSEAVETKLQILNTTIKV-LLCAKGGDMWTITRLFSYLLELAECDLNY 149
L+ ++ +A E ++ +L +L +K+ L+ KG D + ++ +Y + + N
Sbjct: 468 LSEMISTMA----DEDLQIQLALLTAVVKLSLMNGKGNDEELVQKVLNYAINQSS---NQ 520
Query: 150 DVRDRARFFKKLFSHNLCSQVPE----ETNALQENKDLPLVLVECIFRKQENLAA 200
D+RDRA +++L + + + E ++ N +LP L++ + + LA+
Sbjct: 521 DLRDRAFAYQRLLTPENVRKAQKIVCCEKPSVSYNNNLPEALLDALLCEITTLAS 575
>sp|P27351|AP2B_YEAST AP-2 complex subunit beta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APL1 PE=1 SV=2
Length = 700
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 29 ADVLIQSIISI-KSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKI 87
D ++Q IIS+ ++I+++ P+ + + +L + + ++ PE++ +IW++ +YS V I
Sbjct: 412 VDYVVQEIISVFRNILRKYPNNFKANVTELVKHTEVVQEPESKNAMIWIITQYSDV---I 468
Query: 88 PRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDL 147
P L + + F SE +E + ILN+ IK + + + + L + +
Sbjct: 469 PNYLELFRVFSSNMF-SETLEVQFSILNSAIKFFIRSPTKETEELC--MDLLKGCIDHEN 525
Query: 148 NYDVRDRARFFKKLFSHNLCSQV 170
N D+RD+ + +L S S++
Sbjct: 526 NPDLRDKTLMYWRLLSLTKTSRI 548
>sp|Q9LDK9|APBLA_ARATH Beta-adaptin-like protein A OS=Arabidopsis thaliana GN=BETAA-AD
PE=1 SV=1
Length = 841
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 31 VLIQSIISIKSIIKQDPS-CHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPR 89
V ++++ +K ++++ P H+ + + S +I+ P+A+ +IWM+GEY+ P
Sbjct: 425 VTAETLVLVKDLLRKYPQWSHDCISVVGGISSKNIQEPKAKAALIWMLGEYAQDMSDAPY 484
Query: 90 MLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNY 149
+L +++ W + + E +L +L +K + L D +
Sbjct: 485 VLENLIE--NWE-EEHSAEVRLHLLTAAMKCFFKRAP----ETQKALGTALAAGIADFHQ 537
Query: 150 DVRDRARFFKKLFSHNL 166
DV DRA F+ ++ +++
Sbjct: 538 DVHDRALFYYRVLQYDV 554
>sp|Q9WV76|AP4B1_MOUSE AP-4 complex subunit beta-1 OS=Mus musculus GN=Ap4b1 PE=2 SV=2
Length = 738
Score = 37.0 bits (84), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 27/165 (16%)
Query: 3 NTCVEGLLALI--RQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRS 60
+ CV+ L L+ RQE +T+ V++Q+ + ++ P C E V L
Sbjct: 380 DQCVQILTELLGLRQEHITT----------VVVQTF---RDLVWLCPQCTEAVCQALPGC 426
Query: 61 LDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAV-ETKLQILNTTIK 119
++I+ E + +IW++G + G KIP VL+ KSE K+++L ++
Sbjct: 427 EENIQDSEGKQALIWLLGVH---GEKIPNA-PYVLEDFVDNVKSETFPAVKMELLTALMR 482
Query: 120 VLLC--AKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLF 162
++L A+ DM + RL Y +E E D+ VRDR F+ +L
Sbjct: 483 LVLSRPAECQDM--LGRLLHYCIE-EEKDMA--VRDRGLFYYRLL 522
>sp|Q23924|COPB_DICDI Coatomer subunit beta OS=Dictyostelium discoideum GN=copb PE=2 SV=2
Length = 912
Score = 36.6 bits (83), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 16/118 (13%)
Query: 33 IQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLT 92
+ +I ++ +++ PS E +I +L +L SIKV + + +W++ EY + + +T
Sbjct: 419 VDVVIFLREVVETYPSLRELIIKKLIENLSSIKVSKVYRVAVWVIAEYVTCLEDLQYAMT 478
Query: 93 TVLKYLAWCFKSEAVE-------TKLQILNTTIKVLLCAKGGDMW-------TITRLF 136
++ L K + E K++I +I+ L+ GD + ++T+LF
Sbjct: 479 SITNDLEELLKPKQTEEVILETKAKVKIEKVSIQKLIA--DGDWYLASCISSSLTKLF 534
>sp|Q03JN2|REX_STRTD Redox-sensing transcriptional repressor rex OS=Streptococcus
thermophilus (strain ATCC BAA-491 / LMD-9) GN=rex PE=3
SV=1
Length = 219
Score = 34.7 bits (78), Expect = 2.3, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 113 ILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQV 170
I+ T+ K + A G D T+ R FSY EL YDV FF +L + N ++V
Sbjct: 30 IVKTSSKQIAEAIGIDPATVRRDFSYFGELGRRGFGYDVSKLMTFFAELLNDNATTKV 87
>sp|A3EWL3|REV1_ARATH DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 PE=2 SV=1
Length = 1105
Score = 33.9 bits (76), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 10/160 (6%)
Query: 141 ELAECDLNYDVRDRARFFKKLFSHNLCSQVPEET--NALQENKDLPLVLVECIFRKQENL 198
EL + Y R F ++ +H +CS +P+ N ++ LP+V I +++
Sbjct: 105 ELKGYMMKYGGRFENYFSRRSVTHIICSNLPDSKVKNLRTFSRGLPVVKPTWIV---DSI 161
Query: 199 AASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGEEWTG 258
+A+ + ++P L Q+ P P S L + S T E G
Sbjct: 162 SANRLLG---WVPYQLDQLN-DTQPKLSAFFAPRSHLTPQMASPVTSFQPDTGYSEAEEG 217
Query: 259 SSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGD 298
SS D + +D+E Y + + P L++ +GTGD
Sbjct: 218 SSIRADDSEEARDHIDDEIDGVY-IENTTPELTEQTGTGD 256
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 237,188,125
Number of Sequences: 539616
Number of extensions: 10033369
Number of successful extensions: 31091
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 26060
Number of HSP's gapped (non-prelim): 2634
length of query: 665
length of database: 191,569,459
effective HSP length: 124
effective length of query: 541
effective length of database: 124,657,075
effective search space: 67439477575
effective search space used: 67439477575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)