Query 006008
Match_columns 665
No_of_seqs 209 out of 370
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 13:29:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_B AP-2 complex subunit be 99.9 1.9E-24 6.5E-29 239.6 8.9 182 2-221 388-577 (591)
2 2g30_A AP-2 complex subunit be 99.9 5.1E-22 1.8E-26 203.2 22.4 222 379-659 28-257 (258)
3 2vgl_A Adaptor protein complex 99.8 4.1E-21 1.4E-25 215.8 5.5 145 2-165 439-590 (621)
4 1w63_A Adapter-related protein 99.8 1.6E-19 5.6E-24 201.8 8.7 177 2-223 420-609 (618)
5 3hs8_A Adaptor protein complex 97.8 0.0016 5.4E-08 67.2 20.4 194 410-652 66-267 (273)
6 1kyf_A Alpha-adaptin C; protei 97.5 0.017 5.8E-07 58.5 22.7 197 410-655 40-244 (247)
7 1r4x_A Gamma1-COP, coatomer ga 95.2 0.24 8.1E-06 51.3 13.6 192 407-652 54-272 (275)
8 1pzd_A Coatomer gamma subunit; 94.6 0.33 1.1E-05 51.2 13.3 192 407-652 101-319 (322)
9 3mnm_A ADP-ribosylation factor 93.2 0.39 1.3E-05 43.9 9.1 71 392-488 15-88 (123)
10 1p4u_A ADP-ribosylation factor 92.7 0.98 3.3E-05 42.8 11.5 94 385-497 29-122 (153)
11 3zy7_A AP-1 complex subunit ga 91.7 0.71 2.4E-05 42.0 8.9 72 392-487 11-85 (122)
12 1iu1_A Gamma1-adaptin; coated 91.5 1 3.5E-05 42.2 10.1 87 392-501 35-124 (146)
13 1gyu_A Adapter-related protein 91.4 1 3.4E-05 42.1 9.8 75 392-489 29-105 (140)
14 2e9g_A AP-1 complex subunit ga 91.0 0.9 3.1E-05 41.8 9.0 49 392-446 20-68 (131)
15 2vgl_B AP-2 complex subunit be 90.1 0.34 1.2E-05 53.6 6.3 124 26-155 132-259 (591)
16 4fdd_A Transportin-1; heat rep 89.1 0.32 1.1E-05 55.5 5.2 134 28-163 141-284 (852)
17 1b3u_A Protein (protein phosph 88.8 0.25 8.7E-06 52.4 3.9 122 31-158 457-581 (588)
18 2qk2_A LP04448P; mini spindles 84.5 3.3 0.00011 39.8 8.8 125 31-162 73-203 (242)
19 4db6_A Armadillo repeat protei 83.9 1.1 3.9E-05 41.3 5.1 145 5-162 55-207 (210)
20 4fdd_A Transportin-1; heat rep 83.9 0.7 2.4E-05 52.7 4.3 112 3-126 628-746 (852)
21 1oyz_A Hypothetical protein YI 79.5 1.9 6.4E-05 42.0 5.0 53 65-120 103-155 (280)
22 3ltj_A Alpharep-4; protein eng 79.4 1.4 4.8E-05 40.7 3.9 58 53-120 77-134 (201)
23 4db8_A Armadillo-repeat protei 78.0 0.64 2.2E-05 44.1 1.1 136 5-157 97-244 (252)
24 4hxt_A De novo protein OR329; 77.9 1.9 6.6E-05 40.2 4.4 143 4-162 44-198 (252)
25 3ltj_A Alpharep-4; protein eng 77.6 1.8 6.3E-05 39.9 4.1 84 53-157 108-191 (201)
26 1ibr_B P95, importin beta-1 su 77.4 1.9 6.6E-05 44.1 4.6 147 5-163 129-287 (462)
27 4hxt_A De novo protein OR329; 76.9 2.6 8.7E-05 39.4 4.9 145 5-163 87-241 (252)
28 4db8_A Armadillo-repeat protei 76.2 1.9 6.4E-05 40.9 3.8 145 5-162 55-208 (252)
29 3ltm_A Alpha-REP4; protein eng 75.5 2.4 8.1E-05 39.4 4.3 90 4-120 50-139 (211)
30 3ltm_A Alpha-REP4; protein eng 75.4 2.1 7.2E-05 39.8 3.9 91 4-121 19-109 (211)
31 2qk1_A Protein STU2; STU2P, XM 75.1 2.1 7.1E-05 42.5 4.0 129 30-162 76-218 (249)
32 1te4_A Conserved protein MTH18 75.1 2.5 8.6E-05 37.0 4.1 82 54-156 44-125 (131)
33 1oyz_A Hypothetical protein YI 74.7 3.9 0.00013 39.7 5.8 125 5-156 24-149 (280)
34 2jdq_A Importin alpha-1 subuni 73.9 1 3.4E-05 46.3 1.4 146 5-162 21-178 (450)
35 1ibr_B P95, importin beta-1 su 69.5 7.1 0.00024 39.8 6.5 91 29-120 104-201 (462)
36 4b8j_A Importin subunit alpha- 69.2 3.5 0.00012 44.0 4.3 137 5-157 118-266 (528)
37 1b3u_A Protein (protein phosph 68.3 3.6 0.00012 43.5 4.2 129 29-162 101-230 (588)
38 4b8j_A Importin subunit alpha- 68.2 2.1 7.2E-05 45.7 2.3 146 6-163 76-232 (528)
39 2bpt_A Importin beta-1 subunit 67.6 6.6 0.00023 43.8 6.3 114 31-145 614-734 (861)
40 1u6g_C TIP120 protein, CAND1; 66.7 8.8 0.0003 45.7 7.4 125 35-162 106-241 (1230)
41 2jdq_A Importin alpha-1 subuni 65.6 3.5 0.00012 42.2 3.2 140 4-156 107-255 (450)
42 2db0_A 253AA long hypothetical 62.9 5.8 0.0002 39.7 4.0 96 26-124 42-175 (253)
43 1u6g_C TIP120 protein, CAND1; 62.3 2.3 7.9E-05 50.6 1.3 116 34-149 194-311 (1230)
44 1wa5_B Importin alpha subunit; 60.9 2.2 7.5E-05 45.7 0.8 138 5-155 174-319 (530)
45 1qgr_A Protein (importin beta 58.7 6.6 0.00023 43.9 4.2 115 30-144 623-744 (876)
46 1w63_A Adapter-related protein 58.3 11 0.00036 42.1 5.7 106 4-126 313-418 (618)
47 1wa5_B Importin alpha subunit; 57.7 3.3 0.00011 44.3 1.5 127 29-157 145-279 (530)
48 2vgl_A Adaptor protein complex 57.2 8.1 0.00028 43.3 4.6 130 26-157 198-391 (621)
49 4db6_A Armadillo repeat protei 55.5 5.2 0.00018 36.7 2.3 103 5-119 97-206 (210)
50 2bpt_A Importin beta-1 subunit 55.0 18 0.0006 40.4 6.8 128 29-157 109-246 (861)
51 2x19_B Importin-13; nuclear tr 53.9 4.3 0.00015 46.7 1.6 126 35-163 469-596 (963)
52 1qgr_A Protein (importin beta 50.8 21 0.0007 40.0 6.5 134 29-163 144-287 (876)
53 3b2a_A TON_1937, putative unch 50.1 19 0.00063 37.1 5.4 125 33-163 133-260 (265)
54 2qk2_A LP04448P; mini spindles 49.4 21 0.00072 34.0 5.5 94 26-122 109-205 (242)
55 1te4_A Conserved protein MTH18 45.8 11 0.00039 32.7 2.7 59 52-120 73-131 (131)
56 1xqr_A HSPBP1 protein; armadil 45.1 9 0.00031 39.2 2.2 135 27-163 94-238 (296)
57 1xqr_A HSPBP1 protein; armadil 44.3 13 0.00045 38.0 3.3 107 4-121 124-237 (296)
58 3oc3_A Helicase MOT1, MOT1; re 43.9 9.4 0.00032 43.8 2.3 133 4-160 299-432 (800)
59 2z6h_A Catenin beta-1, beta-ca 39.6 12 0.00042 41.3 2.4 112 2-124 12-129 (644)
60 2x1g_F Cadmus; transport prote 38.4 6.8 0.00023 45.3 0.1 94 66-163 519-612 (971)
61 3cfu_A Uncharacterized lipopro 32.0 87 0.003 29.4 6.6 69 411-492 46-116 (159)
62 2x41_A Beta-glucosidase; hydro 29.8 53 0.0018 37.9 5.6 60 412-489 615-677 (721)
63 4ffb_C Protein STU2; tubulin f 29.7 66 0.0023 31.5 5.6 119 30-157 70-205 (278)
64 2xzz_A Protein-glutamine gamma 29.6 53 0.0018 28.8 4.3 53 412-487 20-72 (102)
65 1jdh_A Beta-catenin; beta-cate 28.2 54 0.0018 34.2 4.9 132 28-162 240-384 (529)
66 3ul1_B Importin subunit alpha- 25.0 1.3E+02 0.0044 32.3 7.3 106 5-121 144-260 (510)
67 2qk1_A Protein STU2; STU2P, XM 24.9 47 0.0016 32.6 3.5 107 4-122 104-220 (249)
68 1jdh_A Beta-catenin; beta-cate 24.9 16 0.00056 38.2 0.2 140 2-154 15-162 (529)
69 3m1i_C Exportin-1; heat repeat 24.7 19 0.00063 42.5 0.7 91 70-163 517-615 (1049)
70 4hat_C Exportin-1; heat repeat 24.3 21 0.00073 42.7 1.1 151 4-163 447-615 (1023)
71 2z6g_A B-catenin; FULL-length, 23.2 58 0.002 37.3 4.4 132 28-162 373-517 (780)
72 4ady_A RPN2, 26S proteasome re 22.0 98 0.0034 37.2 6.0 140 6-164 579-719 (963)
73 2z6g_A B-catenin; FULL-length, 21.1 21 0.00073 40.9 0.2 140 3-155 149-296 (780)
No 1
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.90 E-value=1.9e-24 Score=239.59 Aligned_cols=182 Identities=28% Similarity=0.477 Sum_probs=151.1
Q ss_pred hhHHHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCchHHHHHHHHhhcCCCCcccchhheeeeecccc
Q 006008 2 ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYS 81 (665)
Q Consensus 2 a~~Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~~~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~ 81 (665)
+..|++.|+++++. ...+|+.|++.+|++|+|++|+.+..+|.+|++.++.+..|.+|++++|++|||+
T Consensus 388 ~~~~v~~Ll~ll~~-----------~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~ 456 (591)
T 2vgl_B 388 AERCVSTLLDLIQT-----------KVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYA 456 (591)
T ss_dssp HHHHHHHHHHHHHT-----------CCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcc-----------cchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHccc
Confidence 47899999999983 4568899999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcccchHHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhHHHHHHHHHHHhhccC-CCccchhhHHHHHH
Q 006008 82 SVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECD-LNYDVRDRARFFKK 160 (665)
Q Consensus 82 ~~~e~ip~iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~~~L~qyVL~LAkyD-~nyDVRDRARfy~r 160 (665)
. .+++ ++++||.++++|.+|+..||+++|++++|+|.+.|.. ...+++++|+.+++| .|+||||||++||+
T Consensus 457 ~---~~~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~----~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 457 E---RIDN-ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE----TQELVQQVLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp T---TCTT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST----THHHHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred c---cccC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH----HHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Confidence 5 4555 7899999999999999999999999999999998863 357889999999888 59999999999999
Q ss_pred hhcCCCCCCCCcccchhcccCcchHHHHH-hhhccCCCCCCCCCC-cc----c-ccccccHHHHhhcc
Q 006008 161 LFSHNLCSQVPEETNALQENKDLPLVLVE-CIFRKQENLAASEPI-ND----R-FYLPGSLSQIVLHA 221 (665)
Q Consensus 161 LLs~~~~~~~~~~~~~~s~~~~~~~~~a~-~if~~k~p~~~~~~~-~~----r-~~~lGSLSh~l~~~ 221 (665)
||..+. ..++ .++.++||++..++. .. . ...+||||++++.+
T Consensus 529 ll~~~~-------------------~~~~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~ 577 (591)
T 2vgl_B 529 LLSTDP-------------------VTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKP 577 (591)
T ss_dssp TTTTCT-------------------THHHHHHTSCCCCCCSCSSCCCHHHHHHHHTTTTSSHHHHTSC
T ss_pred HHCcCH-------------------HHHHHHHcCCCCCCCCCccccCHHHHHHHHHHhCcchhhhcCC
Confidence 997531 1234 444555544443322 22 1 34689999999854
No 2
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=99.89 E-value=5.1e-22 Score=203.15 Aligned_cols=222 Identities=15% Similarity=0.179 Sum_probs=179.3
Q ss_pred cccCceeecccccCCCCeeEEEEecCCCCCCCCCeEEEEEEEEecCCcceeeeEeeccccccchhhhhhhhhhccccccc
Q 006008 379 QVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTS 458 (665)
Q Consensus 379 ~v~~k~~eLL~~~~G~GL~v~Y~F~r~p~~~s~~mv~Vql~f~N~s~~~i~~I~i~~~~~~~~~~g~~~~l~~~~~~~~~ 458 (665)
+++|| +.+|.+..|+||.|.|+|.|+ ..+++++|+|+|++.++|.++.|.-. |-.=|+.
T Consensus 28 ~~~p~-~~~l~~~~g~GLeI~g~f~r~-----~g~i~l~l~~~N~s~~~is~faIQfN---kNsFGL~------------ 86 (258)
T 2g30_A 28 YVAPK-AVWLPAVKAKGLEISGTFTHR-----QGHIYMEMNFTNKALQHMTDFAIQFN---KNSFGVI------------ 86 (258)
T ss_dssp CCCCC-EEEECGGGTTTEEEEEEEEEE-----TTEEEEEEEEEECSSSCBCCCEEEEC---CBTTCCE------------
T ss_pred CCCch-hhcccccCCCcEEEEEEEEEe-----CCEEEEEEEEecCCccceeeeEEEEc---ccccCcc------------
Confidence 35555 799999999999999999999 68999999999999999999877654 4455552
Q ss_pred CCCCCCcccCCCc-cccCCCCeeEEEEEEecCCCCccc----eEE--EEEcCceeeeEEecCccccccc-ccCCHHHHHH
Q 006008 459 QSDLPTLVPMEEI-TSLEPGQTMKRILEVRFHHHLLPL----KLA--LHCNGKKLPVKLRPDIGYFIKP-VPMDMETFIE 530 (665)
Q Consensus 459 ~~~~~~i~~f~eI-~sL~Pg~s~t~~lgIdF~dstq~~----~f~--l~~~~~~f~V~i~PpvGElv~P-v~mse~~F~~ 530 (665)
...+..+ ..|+||+++++.+.|+|++..+.+ +|| |+|+.+.|++.+.+|+++|+.| ..|+.++|++
T Consensus 87 ------p~~~~~~~~~L~pgqs~~v~lpl~~~~~~~~~~p~~~LQVAIKtn~~vfYF~~~ipl~~l~~e~g~m~~~~F~~ 160 (258)
T 2g30_A 87 ------PSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNIDVFYFSCLIPLNVLFVEDGKMERQVFLA 160 (258)
T ss_dssp ------ESSCCCCCSCBCTTCEEEEEEEEESCSCBCCCSSTTEEEEEEECSSCEEEEEEECCGGGGBCSCCCCCHHHHHH
T ss_pred ------cCccccCCCccCCCCcEEEEEeeecCCcccCCCCCchheeeeecCCceEEEEeecCHHHhcCCcCccCHHHHHH
Confidence 2333345 569999999999999999998854 566 8999999999999999999999 9999999999
Q ss_pred HhccCCCCcccceeeeeccCcCccCccccchhhccchhhhhhhHHHHHHhhccceeeeeccCccccccCCCCCceeeeee
Q 006008 531 MESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSS 610 (665)
Q Consensus 531 eq~kL~GMnE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~kv~~~aN~~~V~~~~p~~~~~~d~~~~~~rFa~ 610 (665)
....|++|||+ +.+++. . .. .. ..+.+-|+..|+..|.-- ..++ ...++|++
T Consensus 161 ~Wk~ip~~nE~--~~~i~~-~-~~----------------~~-~~i~~kL~~~nif~Va~r-----~~~~--q~~ly~S~ 212 (258)
T 2g30_A 161 TWKDIPNENEL--QFQIKE-C-HL----------------NA-DTVSSKLQNNNVYTIAKR-----NVEG--QDMLYQSL 212 (258)
T ss_dssp HHHHSCGGGCE--EEEETT-C-CC----------------CH-HHHHHHHHHTTCEEEEEE-----EETT--EEEEEEEE
T ss_pred HHhhCCCccce--eEeccc-C-cC----------------CH-HHHHHHHHHCCeEEEEee-----cCCC--CceEEEEE
Confidence 99999999999 555553 1 11 11 234455778898888531 2122 23799999
Q ss_pred ccccCCceEEEEEEeccccCCCcceEEEEcccchHHHHHHHHHHHHhhc
Q 006008 611 EILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLV 659 (665)
Q Consensus 611 ~tlss~s~~LiTi~~~~~~~~~~~~~l~vNcEk~ViGs~Ll~~~~~~l~ 659 (665)
+| .++.++|++|++..+ ++ +++|.|+||+++|+.++.+.|..+|.
T Consensus 213 kt-~n~i~vL~el~~~~~--~~-~v~l~vks~~~~i~~li~~~~~~~l~ 257 (258)
T 2g30_A 213 KL-TNGIWILAELRIQPG--NP-NYTLSLKCRAPEVSQYIYQVYDSILK 257 (258)
T ss_dssp EB-TTSCEEEEEEEECSS--CS-SEEEEEEESSGGGHHHHHHHHHHHHH
T ss_pred Ec-cCCcEEEEEEEEccC--CC-cEEEEEecCCchHHHHHHHHHHHHhh
Confidence 98 889999999998443 33 47899999999999999999998885
No 3
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.82 E-value=4.1e-21 Score=215.82 Aligned_cols=145 Identities=18% Similarity=0.226 Sum_probs=124.6
Q ss_pred hhHHHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCchHHHHHHHHhhcCCCCcccchhhee----eee
Q 006008 2 ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMII----WMV 77 (665)
Q Consensus 2 a~~Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~~~iI~~Lak~ld~i~~P~ARAsII----WLI 77 (665)
++.|++.|++||+.. ..+|+.|++.+|++|++++|.-+..++.+|+..+ .+|.|+++++ |++
T Consensus 439 ~~~~v~~Ll~ll~~~-----------~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l---~~~~~~~~li~~~~wil 504 (621)
T 2vgl_A 439 YTWYVDTILNLIRIA-----------GDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEAL---QAPACHENLVKVGGYIL 504 (621)
T ss_dssp THHHHHHHHHHHHHH-----------GGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHH---TSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-----------cccchHHHHHHHHHHHhCChhHHHHHHHHHHHHH---cCccchHHHHHHHHHHh
Confidence 578999999999853 3578889999999999999999999998887655 4789999999 999
Q ss_pred ccccCCCCCcccchH-HHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhHHHHHHHHHHHhhcc--CCCccchhh
Q 006008 78 GEYSSVGVKIPRMLT-TVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAEC--DLNYDVRDR 154 (665)
Q Consensus 78 GEY~~~~e~ip~iaP-dvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~~~L~qyVL~LAky--D~nyDVRDR 154 (665)
|||+...+..+.+.| ++||.+.++|..|+.+||+|+|++++|+|.+.|. ++..++++|+.+++ |.|||||||
T Consensus 505 GEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~-----~~~~i~~~l~~~~~~~~~d~evrdR 579 (621)
T 2vgl_A 505 GEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE-----VKATIQDVLRSDSQLKNADVELQQR 579 (621)
T ss_dssp HHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHSSHHHHSCSSHHHHHH
T ss_pred cchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH-----HHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999853222233445 8999999999999999999999999999998874 35678999999999 899999999
Q ss_pred HHHHHHhhcCC
Q 006008 155 ARFFKKLFSHN 165 (665)
Q Consensus 155 ARfy~rLLs~~ 165 (665)
|++||+||..+
T Consensus 580 A~~y~~Ll~~~ 590 (621)
T 2vgl_A 580 AVEYLRLSTVA 590 (621)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHccC
Confidence 99999999863
No 4
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.78 E-value=1.6e-19 Score=201.79 Aligned_cols=177 Identities=12% Similarity=0.199 Sum_probs=129.0
Q ss_pred hhHHHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCchHHHHHHHHhhcCC--CCcccchhheeeeecc
Q 006008 2 ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDS--IKVPEARVMIIWMVGE 79 (665)
Q Consensus 2 a~~Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~~~iI~~Lak~ld~--i~~P~ARAsIIWLIGE 79 (665)
+..|+..|+++|+. ...+|..|++.+|+.|++++|+.+..+|.+|++.++. ..++.+|+ ++|++||
T Consensus 420 ~~~~v~~ll~lL~~-----------~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~-~~wilGE 487 (618)
T 1w63_A 420 KRWHIDTIMRVLTT-----------AGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQV-AAWCIGE 487 (618)
T ss_dssp HHHHHHHHHHHHHH-----------TGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHh-----------ccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHH-HHHHHhh
Confidence 45799999999985 3357889999999999999999999999999999975 45677875 7999999
Q ss_pred ccCCCC-----------CcccchHHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhHHHHHHHHHHHhhccCCC
Q 006008 80 YSSVGV-----------KIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLN 148 (665)
Q Consensus 80 Y~~~~e-----------~ip~iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~~~L~qyVL~LAkyD~n 148 (665)
|++... ..|..++++|+.++++| .|+..||.++|++++|+|++.|.. ...++.+|..+..|.|
T Consensus 488 y~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~lta~~Kl~~~~~~~-----~~~l~~~L~~~~~~~d 561 (618)
T 1w63_A 488 YGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYALTAIMKLSTRFTCT-----VNRIKKVVSIYGSSID 561 (618)
T ss_dssp HHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHHHTTCSSC-----HHHHHHHHHHHTTCSC
T ss_pred hHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhCcch-----HHHHHHHHHHhcCCCC
Confidence 985210 13456889999999999 799999999999999999999853 3556777777888889
Q ss_pred ccchhhHHHHHHhhcCCCCCCCCcccchhcccCcchHHHHHhhhccCCCCCCCCCCcccccccccHHHHhhccCC
Q 006008 149 YDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAP 223 (665)
Q Consensus 149 yDVRDRARfy~rLLs~~~~~~~~~~~~~~s~~~~~~~~~a~~if~~k~p~~~~~~~~~r~~~lGSLSh~l~~~~~ 223 (665)
+||||||++||+||... ..+++.++.++||++. + ..|.+||+++|...
T Consensus 562 ~evrdRA~~y~~ll~~~-------------------~~~~~~vl~~~P~~~~------~--~~~~~~~~~~~~~~ 609 (618)
T 1w63_A 562 VELQQRAVEYNALFKKY-------------------DHMRSALLERMPVMEK------V--TTNGPSEIVQTNGE 609 (618)
T ss_dssp HHHHHHHHHHHHHHHTT-------------------TTHHHHHHSCCCCCCC-----------------------
T ss_pred HHHHHHHHHHHHHHcCc-------------------HHHHHHHhhcCCCCCc------c--ccCCcccccCCCCC
Confidence 99999999999999752 0134455555444332 1 35889999998654
No 5
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=97.80 E-value=0.0016 Score=67.23 Aligned_cols=194 Identities=12% Similarity=0.173 Sum_probs=119.0
Q ss_pred CCCeEEEEEEEEecCCcceeeeEeeccccccchhhhhhhhhhcccccccCCCCCCcccCCCccccCCCCeeEEEEEEecC
Q 006008 410 SPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFH 489 (665)
Q Consensus 410 s~~mv~Vql~f~N~s~~~i~~I~i~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~i~~f~eI~sL~Pg~s~t~~lgIdF~ 489 (665)
..++..|.|+|.|.+..+|+++.+.=.....++.++.. .+.+.+ ..|+||+.+...+-|...
T Consensus 66 ~~~~g~i~L~~gNKs~~~it~f~~~i~~~~~~~~~l~~----------------~~~~~~--~tI~p~~q~qq~i~v~~~ 127 (273)
T 3hs8_A 66 RQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNL----------------QTKPVD--PTVDGGAQVQQVVNIECI 127 (273)
T ss_dssp ETTEEEEEEEEEECSSSCBBSCCCEEECCTTHHHHEEE----------------EECCCC--SCBCTTCEEEEEEEEEEC
T ss_pred eCceEEEEEEEEcCCCCcceeEEEEEECCCCCCcceEE----------------EecCCC--CeECCCCEEEEEEEEEEc
Confidence 45699999999999999999876632211122334420 122333 468999988887776543
Q ss_pred CCC-ccceEEE--EEcCceeeeEEecCcc--cccccccCCHHHHHHHhccCCCCcccceeeeeccCcCccCccccchhhc
Q 006008 490 HHL-LPLKLAL--HCNGKKLPVKLRPDIG--YFIKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLL 564 (665)
Q Consensus 490 dst-q~~~f~l--~~~~~~f~V~i~PpvG--Elv~Pv~mse~~F~~eq~kL~GMnE~~~~~~~~~~~~~~~~~~~~~~~~ 564 (665)
+-- .+-.+.| .|.+..-.++|+=||+ -+|.|..|+.++|.+.=..|.| .+...+..|... .+.
T Consensus 128 ~pF~~~P~l~isf~~~g~~~~~~LkLPi~~~kf~~p~~~~~~~F~~rWkql~~-~~~E~q~v~~~~-~~~---------- 195 (273)
T 3hs8_A 128 SDFTEAPVLNIQFRYGGTFQNVSVKLPITLNKFFQPTEMASQDFFQRWKQLSN-PQQEVQNIFKAK-HPM---------- 195 (273)
T ss_dssp SCCCCCCEEEEEEEETTEEEEEEEECCCCGGGGEEECCCCHHHHHHHHHHCCS-GGGEEEEEEECS-SCC----------
T ss_pred ccccCCCEEEEEEEECCeEEEEEEecceehhheeccccCCHHHHHHHHHhcCC-CCceEEEEecCC-CCC----------
Confidence 322 2333444 3455444667776664 6999999999999999999997 443334455320 000
Q ss_pred cchhhhhhhHHHHHHhhccceeeeeccCccccccCCCCCceeeeeecccc---CCceEEEEEEeccccCCCcceEEEEcc
Q 006008 565 KDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSSEILG---NSVPCLITITVEGKCSEPLKVSAKVNC 641 (665)
Q Consensus 565 ~~~~~~~~~~i~~kv~~~aN~~~V~~~~p~~~~~~d~~~~~~rFa~~tls---s~s~~LiTi~~~~~~~~~~~~~l~vNc 641 (665)
.....++++..-+++++.-. |+-.++. ++|-+++ .+..||+.|+.... .. ...|+|-|
T Consensus 196 -------~~~~v~~~l~~lg~~vl~g~-------Dpn~~n~--v~AGi~~t~~g~~gcLvRle~n~~-~~--~~rlTVRS 256 (273)
T 3hs8_A 196 -------DTEITKAKIIGFGSALLEEV-------DPNPANF--VGAGIIHTKTTQIGCLLRLEPNLQ-AQ--MYRLTLRT 256 (273)
T ss_dssp -------CHHHHHHHHHHHTCEECTTS-------SSSTTSE--EEEEEEECSSCEEEEEEEEEEETT-TT--EEEEEEEE
T ss_pred -------CHHHHHHHHHhCCeEEeCCC-------CCCcccE--EEEEEEEeCCCCEEEEEEEEEccc-CC--EEEEEEEE
Confidence 12345567788888877532 3222232 3343444 67889999997321 22 67899999
Q ss_pred cchHHHHHHHH
Q 006008 642 EETVFGLNLLN 652 (665)
Q Consensus 642 Ek~ViGs~Ll~ 652 (665)
++-.+--.|++
T Consensus 257 t~~~vs~~i~~ 267 (273)
T 3hs8_A 257 SKDTVSQRLCE 267 (273)
T ss_dssp SSHHHHHHHHH
T ss_pred CChhHHHHHHH
Confidence 99876444333
No 6
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=97.51 E-value=0.017 Score=58.54 Aligned_cols=197 Identities=12% Similarity=0.164 Sum_probs=119.3
Q ss_pred CCCeEEEEEEEEecCCcceeeeEeeccccccchhhhhhhhhhcccccccCCCCCCcccCCCccccCCCCeeEEEEEEecC
Q 006008 410 SPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFH 489 (665)
Q Consensus 410 s~~mv~Vql~f~N~s~~~i~~I~i~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~i~~f~eI~sL~Pg~s~t~~lgIdF~ 489 (665)
..++-.|-|+|.|.+..+|+++.+.-......+.++. - .+.+.+. .++||+.+.-.+.|--.
T Consensus 40 ~~~~gri~l~~gNKs~~~l~~f~~~i~~~~~~~~~l~----~------------~~~~~~~--~I~~~~q~qq~i~v~~~ 101 (247)
T 1kyf_A 40 RQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLN----L------------QTKPVDP--TVDGGAQVQQVVNIECI 101 (247)
T ss_dssp ETTEEEEEEEEEECSSSCBEEEEEEEECCHHHHHHEE----E------------EECCCCS--CBCTTCEEEEEEEEEEC
T ss_pred eCCeEEEEEEEEcCCCCceeeEEEEEecCcccCCCee----E------------ecCCCCc--eeCCCcEEEEEEEEEEc
Confidence 3568899999999999999999886432111222231 0 0122222 59999998888877655
Q ss_pred CCCc-cceEEE--EEcCceeeeEEecCc--ccccccccCCHHHHHHHhccCCCCcccceeeeeccCcCccCccccchhhc
Q 006008 490 HHLL-PLKLAL--HCNGKKLPVKLRPDI--GYFIKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLL 564 (665)
Q Consensus 490 dstq-~~~f~l--~~~~~~f~V~i~Ppv--GElv~Pv~mse~~F~~eq~kL~GMnE~~~~~~~~~~~~~~~~~~~~~~~~ 564 (665)
+--. +-.+.| .+.+....++|+=|| --|+.|..|+.++|.+-=..|.|= +...+..|... ...
T Consensus 102 ~~f~~~P~l~isf~~~g~~~~~~LkLPi~l~KF~~p~~~~~~~Ff~rW~~l~~~-~~E~q~~f~~~-~~~---------- 169 (247)
T 1kyf_A 102 SDFTEAPVLNIQFRYGGTFQNVSVKLPITLNKFFQPTEMASQDFFQRWKQLSNP-QQEVQNIFKAK-HPM---------- 169 (247)
T ss_dssp SCCCCCCEEEEEEEETTEEEEEEEECCCCGGGGEEECCCCHHHHHHHHTTCCSG-GGEEEEEEECS-SCC----------
T ss_pred cccCCCCEEEEEEEECCeeeEEEEecCcEEEEeecCCcCCHHHHHHHHHhccCC-CceeEEEeccC-CCc----------
Confidence 5444 434444 455554556666565 469999999999999988888873 22224444421 001
Q ss_pred cchhhhhhhHHHHHHhhccceeeeeccCccccccCCCCCceeeeeeccccCC---ceEEEEEEeccccCCCcceEEEEcc
Q 006008 565 KDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSSEILGNS---VPCLITITVEGKCSEPLKVSAKVNC 641 (665)
Q Consensus 565 ~~~~~~~~~~i~~kv~~~aN~~~V~~~~p~~~~~~d~~~~~~rFa~~tlss~---s~~LiTi~~~~~~~~~~~~~l~vNc 641 (665)
....+ .+++..-++++++. .|+-.++ =++|-+++++ ..||+.|+.... .. .+.|+|-|
T Consensus 170 ------~~~~~-~~~l~gf~~~vl~~-------vDpn~~n--iv~agi~~t~~~~~gcLlRlE~n~~-~~--~~rltvRs 230 (247)
T 1kyf_A 170 ------DTEIT-KAKIIGFGSALLEE-------VDPNPAN--FVGAGIIHTKTTQIGCLLRLEPNLQ-AQ--MYRLTLRT 230 (247)
T ss_dssp ------CHHHH-HHHHHHHTSEEECS-------SSSSTTS--EEEEEEEECSSCEEEEEEEEEEETT-TT--EEEEEEEE
T ss_pred ------CHHHH-HHHHhcCCeEEeeC-------CCCCcCc--EEEEEEEEcCCCcEEEEEEEEEcCc-CC--EEEEEEEE
Confidence 11223 45566777887753 3432232 3555556554 469999986322 11 37899999
Q ss_pred cchHHHHHHHHHHH
Q 006008 642 EETVFGLNLLNRIV 655 (665)
Q Consensus 642 Ek~ViGs~Ll~~~~ 655 (665)
.+.-+--.|++-|+
T Consensus 231 s~~~vs~~l~~ll~ 244 (247)
T 1kyf_A 231 SKDTVSQRLCELLS 244 (247)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH
Confidence 87776554444443
No 7
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2
Probab=95.15 E-value=0.24 Score=51.32 Aligned_cols=192 Identities=14% Similarity=0.113 Sum_probs=117.9
Q ss_pred CCCCCCeEEEEEEEEecC-CcceeeeEeeccccccchhhhhhhhhhcccccccCCCCCCcccCCCccccCCCCeeEEEEE
Q 006008 407 STISPQLVCLETFFENCS-SETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILE 485 (665)
Q Consensus 407 ~~~s~~mv~Vql~f~N~s-~~~i~~I~i~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~i~~f~eI~sL~Pg~s~t~~lg 485 (665)
|+|..++| +|...+|+= |+-++|+.+.=.- .++. .....-+|++|+||++-+.-.-
T Consensus 54 HiF~~hiV-lQF~i~NTL~dq~LenVsV~~~~----~d~~------------------~~~~~ipi~~L~~~~~g~~yV~ 110 (275)
T 1r4x_A 54 HTFTNHMV-FQFDCTNTLNDQTLENVTVQMEP----TEAY------------------EVLXYVPARSLPYNQPGTCYTL 110 (275)
T ss_dssp EECSSEEE-EEEEEEECCTTEEEEEEEEEEEE----SSSC------------------EEEEEECEEEECTTCCEEEEEE
T ss_pred EecCCcEE-EEEEeEEccCcEEEeeEEEEEEc----CCCc------------------eEEEeeeccccCCCCCccEEEE
Confidence 44555555 999999976 7788999987431 1111 1233346899999997777666
Q ss_pred EecCC--CCc-------cceEEEEEcC------------ceeee-EEecCcccccccccCCHHHHHHHhccCCCCcccce
Q 006008 486 VRFHH--HLL-------PLKLALHCNG------------KKLPV-KLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYAR 543 (665)
Q Consensus 486 IdF~d--stq-------~~~f~l~~~~------------~~f~V-~i~PpvGElv~Pv~mse~~F~~eq~kL~GMnE~~~ 543 (665)
+.+.. ... .++|.++.-+ +-|++ .|.--+|-+|+|+.. .+|...=.+|..-+|...
T Consensus 111 l~~~~~~~~~~~~tf~~~LkF~vke~Dp~tGe~~deGyeDEY~lEdlel~~~D~i~p~~~--~nF~~~We~l~~~~E~~~ 188 (275)
T 1r4x_A 111 VALPKEDPTAVACTFSCMMKFTVKDCDPTTGETDDEGYEDEYVLEDLEVTVADHIQKVMK--LNFEAAWDEVGDEFEKEE 188 (275)
T ss_dssp EECCSSSTTCCCEEEEEEEEEEEEEBCTTTCCBCSCCEEEEEECCCEEECGGGGEEECCC--SCHHHHHHHHCSTTCEEE
T ss_pred EEcCCCccccccceeEEEEEEEEEeccCCCCCcCCCCccceEEccceeechhhEEeeccc--CchHHHHHhcCCccceEE
Confidence 66663 222 2344443311 12221 223346779999764 479998888876688866
Q ss_pred eeeeccCcCccCccccchhhccchhhhhhhHHHHHHhhccceeeeeccCccccccCCC----CCceeeeeeccccCCceE
Q 006008 544 SCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDA----SGLSLRFSSEILGNSVPC 619 (665)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~kv~~~aN~~~V~~~~p~~~~~~d~----~~~~~rFa~~tlss~s~~ 619 (665)
+..+.. . + ..+.-+.+|++..|+. ||+ +.+.. ....+.++|+ +-.+..|
T Consensus 189 tf~L~~-~-------------~-----sl~~AV~~l~~~Lgm~--p~e-----~sd~v~~~~~~HtL~LsG~-~~gg~~V 241 (275)
T 1r4x_A 189 TFTLST-I-------------K-----TLEEAVGNIVKFLGMH--PCE-----RSDKVPDNKNTHTLLLAGV-FRGGHDI 241 (275)
T ss_dssp EEEETT-C-------------C-----CHHHHHHHHHHHHTCE--ECT-----TTTSCCSSCSEEEEEEEEE-ETTTEEE
T ss_pred EEEccC-c-------------C-----cHHHHHHHHHHhcCCc--ccc-----CCccCCCCCcceEEEEEEE-EeCCcEE
Confidence 666642 0 0 1244568898888886 443 21221 2224679999 6677788
Q ss_pred EEEEEeccccCCCcceEEEEcccchHHHHHHHH
Q 006008 620 LITITVEGKCSEPLKVSAKVNCEETVFGLNLLN 652 (665)
Q Consensus 620 LiTi~~~~~~~~~~~~~l~vNcEk~ViGs~Ll~ 652 (665)
|+.+.+-- +....++|+|-||.--+--.+++
T Consensus 242 lvr~rl~~--~~gv~~kl~vRs~~~~v~~~v~~ 272 (275)
T 1r4x_A 242 LVRSRLLL--LDTVTMQVTARSLEELPVDIILA 272 (275)
T ss_dssp EEEEEEEE--SSSEEEEEEEEESSHHHHHHHHH
T ss_pred EEEEEEec--CCceEEEEEEEcCCHHHHHHHHH
Confidence 88887521 21236889999998877555554
No 8
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2
Probab=94.63 E-value=0.33 Score=51.20 Aligned_cols=192 Identities=14% Similarity=0.105 Sum_probs=116.2
Q ss_pred CCCCCCeEEEEEEEEecC-CcceeeeEeeccccccchhhhhhhhhhcccccccCCCCCCcccCCCccccCCCCeeEEEEE
Q 006008 407 STISPQLVCLETFFENCS-SETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILE 485 (665)
Q Consensus 407 ~~~s~~mv~Vql~f~N~s-~~~i~~I~i~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~i~~f~eI~sL~Pg~s~t~~lg 485 (665)
|+|..|+| +|...+|+= |+-++|+.+.=.- .++. .+...-+|++|.||++-+.-.-
T Consensus 101 HiF~~hiV-lQF~~~NTL~dq~LenV~V~~~~----~~~~------------------~~~~~ip~~~L~~~~~g~~yv~ 157 (322)
T 1pzd_A 101 HTFTDHMV-FQFDCTNTLNDQTLENVTVQMEP----SEAY------------------EVLCYVPARSLPYNQPGTCYTL 157 (322)
T ss_dssp EECSSEEE-EEEEEEECCTTEEEEEEEEEEEE----SSSC------------------EEEEEECEEEECBTCCEEEEEE
T ss_pred EeccCcEE-EEEEEEEccCceEEeeEEEEEec----CCCc------------------eEEEEEEHhHCCCCCCeeEEEE
Confidence 45555665 999999976 7788999987431 1121 1233346899999997777666
Q ss_pred EecCC--CCcc-------ceEEEEEc------------Cceeee-EEecCcccccccccCCHHHHHHHhccCCCCcccce
Q 006008 486 VRFHH--HLLP-------LKLALHCN------------GKKLPV-KLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYAR 543 (665)
Q Consensus 486 IdF~d--stq~-------~~f~l~~~------------~~~f~V-~i~PpvGElv~Pv~mse~~F~~eq~kL~GMnE~~~ 543 (665)
+.+.. ...+ ++|.+..- .+-|++ .|.--+|-+|+|+.. .+|...=.+|..-+|...
T Consensus 158 ~~~~~~~~~~~~~~f~~~LkF~vke~Dp~TGe~~deGyeDEY~lEdlel~~~D~i~p~~~--~nF~~~We~l~~~~E~~~ 235 (322)
T 1pzd_A 158 VALPKEDPTAVACTFSCVMKFTVKDCDPTTGEADDEGYEDEYVLEDLEVTIADHIQKVMK--LNFEAAWDEVGDEFQKEE 235 (322)
T ss_dssp EECCSSCTTCCCEEEEEEEEEEEEEBCTTTCCBCSCCEEEEEECCCEEECGGGGEEECCC--SCHHHHHHHHCSTTCEEE
T ss_pred EEecCCCCCccceEEEEEEEEEEEeecCCCCCcCCCCccceEEccceeechhhEeeeccc--CchHHHHHhcCCccceEE
Confidence 66663 2222 23333221 111221 123346678999764 479998888875588866
Q ss_pred eeeeccCcCccCccccchhhccchhhhhhhHHHHHHhhccceeeeeccCccccccCCC----CCceeeeeeccccCCceE
Q 006008 544 SCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDA----SGLSLRFSSEILGNSVPC 619 (665)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~kv~~~aN~~~V~~~~p~~~~~~d~----~~~~~rFa~~tlss~s~~ 619 (665)
+..+.. . + ..+.-+.+|++..|+. ||+ +.+.. ....+.++|+ +-.+..|
T Consensus 236 tf~L~~-~-------------~-----sL~~AV~~l~~~Lgm~--p~e-----~sd~v~~~~~sHtL~LsG~-~~gg~~V 288 (322)
T 1pzd_A 236 TFTLST-I-------------K-----TLEEAVGNIVKFLGMH--PCE-----RSDKVPDNKNTHTLLLAGV-FRGGHDI 288 (322)
T ss_dssp EEEESS-C-------------C-----CHHHHHHHHHHHHTCE--ECT-----TTTCCCSSCSEEEEEEEEE-ETTSCEE
T ss_pred EEEccC-c-------------C-----cHHHHHHHHHHhcCCc--ccc-----CCCcCCCCCcceEEEEEEE-EeCCcEE
Confidence 666542 0 0 1244568888888886 443 21221 2224679999 6677788
Q ss_pred EEEEEeccccCCCcceEEEEcccchHHHHHHHH
Q 006008 620 LITITVEGKCSEPLKVSAKVNCEETVFGLNLLN 652 (665)
Q Consensus 620 LiTi~~~~~~~~~~~~~l~vNcEk~ViGs~Ll~ 652 (665)
|+.+.+-- +....++|+|-+|.--+--++++
T Consensus 289 Lvr~rl~~--~~gv~~kl~vRS~~~~v~~~v~~ 319 (322)
T 1pzd_A 289 LVRSRLLL--LDTVTMQVTARSSEELPVDIVLA 319 (322)
T ss_dssp EEEEEEEE--SSSEEEEEEEEESSHHHHHHHHH
T ss_pred EEEEEEee--CCceEEEEEEecCCHHHHHHHHH
Confidence 88887521 21236889999998877555544
No 9
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=93.15 E-value=0.39 Score=43.89 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=52.0
Q ss_pred CCCCeeEEEEecCCCCCCCCCeEEEEEEEEecCCcceeeeEeeccccccchhhhhhhhhhcccccccCCCCCCcccCCCc
Q 006008 392 NGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEI 471 (665)
Q Consensus 392 ~G~GL~v~Y~F~r~p~~~s~~mv~Vql~f~N~s~~~i~~I~i~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~i~~f~eI 471 (665)
..+||.|.+.|.|.+ +..+.|.++|.|.+..+|+++++-- -.|.+++..|.. +=
T Consensus 15 ~~~~l~I~~~~~~~~----~~~~~i~~~fsN~s~~~it~f~fqa----AVPKs~kL~L~p------------------~S 68 (123)
T 3mnm_A 15 QSPNLKIEFEISRES----NSVIRIXSFFTNLSSSPISNLVFLL----AVPKSMSLXLQP------------------QS 68 (123)
T ss_dssp ECSSEEEEEEEEECS----SSCEEEEEEEEECSSSCEEEEEEEE----ECCTTSEEEECC------------------CS
T ss_pred eCCCEEEEEEEEeCC----CCeEEEEEEEecCCCCccccEEEEE----ecCcccEEEeEC------------------CC
Confidence 468999999999976 3578899999999999999999953 334555433222 11
Q ss_pred c-ccCCC--CeeEEEEEEec
Q 006008 472 T-SLEPG--QTMKRILEVRF 488 (665)
Q Consensus 472 ~-sL~Pg--~s~t~~lgIdF 488 (665)
. .|+|+ +.+|=.|-|.=
T Consensus 69 g~~L~p~~~~~itQ~~~I~n 88 (123)
T 3mnm_A 69 SNFMIGNAKDGISQEGTIEN 88 (123)
T ss_dssp CSCBCTTCTTCEEEEEEEES
T ss_pred cCccCCCCCCCEEEEEEEec
Confidence 1 47787 67888888873
No 10
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A
Probab=92.68 E-value=0.98 Score=42.76 Aligned_cols=94 Identities=18% Similarity=0.316 Sum_probs=60.2
Q ss_pred eecccccCCCCeeEEEEecCCCCCCCCCeEEEEEEEEecCCcceeeeEeeccccccchhhhhhhhhhcccccccCCCCCC
Q 006008 385 YTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPT 464 (665)
Q Consensus 385 ~eLL~~~~G~GL~v~Y~F~r~p~~~s~~mv~Vql~f~N~s~~~i~~I~i~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~ 464 (665)
+..++ .+||.|.+.|.|....-.+....|.+.|.|++..+|+++++-- -.|.+++..|..- +.. .
T Consensus 29 v~v~~---~n~l~I~f~~~~~~~p~~~~~~~i~~~~~N~s~~~is~f~fQa----AVPK~~kLqL~pp-----Sg~---~ 93 (153)
T 1p4u_A 29 VTAYD---KNGFRILFHFAKECPPGRPDVLVVVVSMLNMAPLPVKSIVLQA----AAPKSMKVKLQPP-----SGT---E 93 (153)
T ss_dssp EEEEE---ETTEEEEEEEBSSCCTTCTTEEEEEEEEEECSSSCBEEEEEEE----ECBTTSEEEECCC-----SCS---C
T ss_pred EEEEe---cCCEEEEEEEEecCCCCCCCeEEEEEEEEeCCCCccccEEEEE----EcCcccEEEeeCC-----CCC---c
Confidence 44554 4899999999997555567888899999999999999999863 3455555443320 011 1
Q ss_pred cccCCCccccCCCCeeEEEEEEecCCCCccceE
Q 006008 465 LVPMEEITSLEPGQTMKRILEVRFHHHLLPLKL 497 (665)
Q Consensus 465 i~~f~eI~sL~Pg~s~t~~lgIdF~dstq~~~f 497 (665)
|.++.+| ++|+ .+|-.|-|.-... .++++
T Consensus 94 L~p~~~~--~~~~-~ItQ~m~v~n~~~-~~l~L 122 (153)
T 1p4u_A 94 LSPFSPI--QPPA-AITQVMLLANPLK-EKVRL 122 (153)
T ss_dssp BCCCBTT--BCCC-EEEEEEEEECTTC-CCCCE
T ss_pred cCCCCcC--CCCC-CEEEEEEEeCCCC-CCEEE
Confidence 2233333 2333 4888888866532 44443
No 11
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=91.68 E-value=0.71 Score=42.00 Aligned_cols=72 Identities=15% Similarity=0.300 Sum_probs=51.2
Q ss_pred CCCCeeEEEEecCCCCCCCCCeEEEEEEEEecCCcceeeeEeeccccccchhhhhhhhhhcccccccCCCCCCcccCCCc
Q 006008 392 NGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEI 471 (665)
Q Consensus 392 ~G~GL~v~Y~F~r~p~~~s~~mv~Vql~f~N~s~~~i~~I~i~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~i~~f~eI 471 (665)
..+||.|.+.|.|.+. .+..+.|.++|.|++..+|+++++-- -.|.+++..|.. +=
T Consensus 11 ~~~~l~I~~~~~~~~~--~~~~~~i~~~~~N~s~~~it~f~fqa----AVPKs~kL~L~p------------------~S 66 (122)
T 3zy7_A 11 DALGLKIEFTFERSNT--NPSVTVITIQASNSTELDMTDFVFQA----AVPKTFQLQLLS------------------PS 66 (122)
T ss_dssp EETTEEEEEEEECC------CEEEEEEEEEECSSSCBEEEEEEE----ECCTTSEEEECC------------------CS
T ss_pred eCCCEEEEEEEEcCCC--CCCeEEEEEEEEECCCCccccEEEEE----EcCcccEEEecC------------------CC
Confidence 4689999999999763 46788999999999999999999853 334555432222 11
Q ss_pred -cccCC--CCeeEEEEEEe
Q 006008 472 -TSLEP--GQTMKRILEVR 487 (665)
Q Consensus 472 -~sL~P--g~s~t~~lgId 487 (665)
..|+| |+.+|=.|-|.
T Consensus 67 g~~l~p~~~~~itQ~l~i~ 85 (122)
T 3zy7_A 67 SSVVPAFNTGTITQVIKVL 85 (122)
T ss_dssp CSCBCGGGSCCEEEEEEEE
T ss_pred CCccCCCCCCCEEEEEEEE
Confidence 14677 77888888886
No 12
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=91.53 E-value=1 Score=42.20 Aligned_cols=87 Identities=16% Similarity=0.293 Sum_probs=57.5
Q ss_pred CCCCeeEEEEecCCCCCCCCCeEEEEEEEEecCCcceeeeEeeccccccchhhhhhhhhhcccccccCCCCCCcccCCCc
Q 006008 392 NGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEI 471 (665)
Q Consensus 392 ~G~GL~v~Y~F~r~p~~~s~~mv~Vql~f~N~s~~~i~~I~i~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~i~~f~eI 471 (665)
+.+||.|.+.|.|.+. .+..+.|.++|.|++..+|+++++-- -.|.+++..|.. -. =
T Consensus 35 ~~~~l~I~f~~~r~~~--~~~~~~i~~~f~N~s~~~it~f~fQa----AVPK~~kLqL~p----------------pS-g 91 (146)
T 1iu1_A 35 SKNGLKIEFTFERSNT--NPSVTVITIQASNSTELDMTDFVFQA----AVPKTFQLQLLS----------------PS-S 91 (146)
T ss_dssp EETTEEEEEEEEECSS--CTTEEEEEEEEEECSSSCBEEEEEEE----ECCTTSEEEECC----------------CS-C
T ss_pred ecCCEEEEEEEEcCCC--CCCEEEEEEEEEeCCCCccccEEEEE----EcCcccEEEeeC----------------CC-C
Confidence 3489999999999765 57788999999999999999999853 345555433222 00 1
Q ss_pred cccCC--CCeeEEEEEEecCCC-CccceEEEEE
Q 006008 472 TSLEP--GQTMKRILEVRFHHH-LLPLKLALHC 501 (665)
Q Consensus 472 ~sL~P--g~s~t~~lgIdF~ds-tq~~~f~l~~ 501 (665)
..|+| ++.+|-.|-|.-... -..++|.|..
T Consensus 92 ~~L~p~~~~~ItQ~~~I~n~~~~~lklR~klsY 124 (146)
T 1iu1_A 92 SIVPAFNTGTITQVIKVLNPQKQQLRMRIKLTY 124 (146)
T ss_dssp SCBCGGGCCCEEEEEEEECTTCCCCCCEEEEEE
T ss_pred CccCCCCCCCEEEEEEEeCCCCCCEEEEEEEEE
Confidence 24666 345788888865432 1333444433
No 13
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=91.38 E-value=1 Score=42.07 Aligned_cols=75 Identities=16% Similarity=0.279 Sum_probs=53.0
Q ss_pred CCCCeeEEEEecCCCCCCCCCeEEEEEEEEecCCcceeeeEeeccccccchhhhhhhhhhcccccccCCCCCCcccCCCc
Q 006008 392 NGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEI 471 (665)
Q Consensus 392 ~G~GL~v~Y~F~r~p~~~s~~mv~Vql~f~N~s~~~i~~I~i~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~i~~f~eI 471 (665)
+.+||.|.+.|.|.+. .+..+.|.++|.|++..+|+++++-- -.|.+++..|.. - -=
T Consensus 29 ~~n~L~I~f~~~r~~~--~~~~~~i~~~f~N~s~~~it~f~fQa----AVPKs~kLqL~p----------------p-Sg 85 (140)
T 1gyu_A 29 SKNGLKIEFTFERSNT--NPSVTVITIQASNSTELDMTDFVFQA----AVPKTFQLQLLS----------------P-SS 85 (140)
T ss_dssp EETTEEEEEEEEECSS--CTTEEEEEEEEEECSSSCBEEEEEEE----ECCTTCEEEECC----------------C-SC
T ss_pred ecCCEEEEEEEEcCCC--CCCEEEEEEEEEECCCCccccEEEEE----EcCcccEEEeeC----------------C-CC
Confidence 3489999999999765 57888999999999999999999853 345555433222 0 01
Q ss_pred cccCC--CCeeEEEEEEecC
Q 006008 472 TSLEP--GQTMKRILEVRFH 489 (665)
Q Consensus 472 ~sL~P--g~s~t~~lgIdF~ 489 (665)
..|+| ++.+|-.|-|.-.
T Consensus 86 ~~L~p~~~~~ItQ~m~I~n~ 105 (140)
T 1gyu_A 86 SVVPAFNTGTITQVIKVLNP 105 (140)
T ss_dssp SCBCGGGCCCEEEEEEEECT
T ss_pred CccCCCCCCCEEEEEEEeCC
Confidence 24666 3457888888654
No 14
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.05 E-value=0.9 Score=41.75 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=39.8
Q ss_pred CCCCeeEEEEecCCCCCCCCCeEEEEEEEEecCCcceeeeEeeccccccchhhhh
Q 006008 392 NGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLAD 446 (665)
Q Consensus 392 ~G~GL~v~Y~F~r~p~~~s~~mv~Vql~f~N~s~~~i~~I~i~~~~~~~~~~g~~ 446 (665)
+.+||.|.+.|.|.|. .+..+.|.++|.|++..+|+++++-- -.|.+++
T Consensus 20 ~~~~l~I~f~~~~~~~--~~~~~~i~~~~~N~s~~~it~f~fQa----AVPK~~k 68 (131)
T 2e9g_A 20 EREGVQLNLSFIRPPE--NPALLLITITATNFSEGDVTHFICQA----AVPKSLQ 68 (131)
T ss_dssp ECSSEEEEEEEECCSS--CTTEEEEEEEEEECSSSCEEEEEEEE----ECCTTSC
T ss_pred ecCCEEEEEEEEcCCC--CCCeEEEEEEEEECCCCccccEEEEE----EcCcccE
Confidence 3589999999999764 57788999999999999999999853 3345553
No 15
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=90.09 E-value=0.34 Score=53.56 Aligned_cols=124 Identities=10% Similarity=-0.002 Sum_probs=89.6
Q ss_pred CCCcceeeehHHHHHHHHhhCCCchH--HHHHHHHhhcCCCCcccchhheeeeeccccCCCC-C-cccchHHHHHHHHhh
Q 006008 26 NGEADVLIQSIISIKSIIKQDPSCHE--KVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV-K-IPRMLTTVLKYLAWC 101 (665)
Q Consensus 26 ~~~~~VV~EsVvVIk~LLqk~P~~~~--~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~~e-~-ip~iaPdvLR~laks 101 (665)
+.+.+|=..|+..+.+|.+.+|+... ..+..|.+.|+ =.+|.-+++.+|.+++.+.... . .-...+..++++.+.
T Consensus 132 d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~ 210 (591)
T 2vgl_B 132 DEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTA 210 (591)
T ss_dssp CSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHc
Confidence 45555556699999999999998654 57888888886 3578899999999999875321 1 123567778888888
Q ss_pred hcCChHHHHHHHHHhhhheeeeccCCChhHHHHHHHHHHHhhccCCCccchhhH
Q 006008 102 FKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRA 155 (665)
Q Consensus 102 F~~E~~eVKLQILtlaaKl~l~~p~e~~~~~~~L~qyVL~LAkyD~nyDVRDRA 155 (665)
..+.++-+|..+|.+..++. |. +......++.+++.+-+ +.|+.||=-|
T Consensus 211 l~~~~~~~q~~il~~l~~l~---~~-~~~~~~~~l~~l~~~l~-~~~~~V~~ea 259 (591)
T 2vgl_B 211 LNECTEWGQIFILDCLSNYN---PK-DDREAQSICERVTPRLS-HANSAVVLSA 259 (591)
T ss_dssp HHHCCHHHHHHHHHHHHTSC---CC-SHHHHHHHHHHHTTCSC-SSTTHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHhC---CC-ChHHHHHHHHHHHHHHc-CCChHHHHHH
Confidence 88888889999999988775 22 22345677788776644 4467776544
No 16
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=89.05 E-value=0.32 Score=55.49 Aligned_cols=134 Identities=11% Similarity=0.127 Sum_probs=92.1
Q ss_pred CcceeeehHHHHHHHHhhCCCc---------hHHHHHHHHhhcCCCCcccchhheeeeeccccCCCC-CcccchHHHHHH
Q 006008 28 EADVLIQSIISIKSIIKQDPSC---------HEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV-KIPRMLTTVLKY 97 (665)
Q Consensus 28 ~~~VV~EsVvVIk~LLqk~P~~---------~~~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~~e-~ip~iaPdvLR~ 97 (665)
+..+...++.++..|+..+|.. ...++..|.+.+.. ..+..|.+.+|.++.|..... .+-...+.+++.
T Consensus 141 ~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~ 219 (852)
T 4fdd_A 141 DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQALMLHIDSFIEN 219 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3333444777899999887765 24456666666653 357789999999998874211 112235678888
Q ss_pred HHhhhcCChHHHHHHHHHhhhheeeeccCCChhHHHHHHHHHHHhhccCCCccchhhHHHHHHhhc
Q 006008 98 LAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFS 163 (665)
Q Consensus 98 laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~~~L~qyVL~LAkyD~nyDVRDRARfy~rLLs 163 (665)
+.+...++...||.+.+.+..++.-..|..-...+..++.+++.+.+ |.+.+||-.|--+|.-+.
T Consensus 220 l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~vr~~a~e~l~~l~ 284 (852)
T 4fdd_A 220 LFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ-DQDENVALEACEFWLTLA 284 (852)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc-CCcHHHHHHHHHHHHHHh
Confidence 88778889999999888888777655553211235678899988876 457889999876665554
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=88.80 E-value=0.25 Score=52.44 Aligned_cols=122 Identities=11% Similarity=0.053 Sum_probs=78.2
Q ss_pred eeeehHHHHHHHHhhCCCc--hHHHHHHHHhhcCCCCcccchhheeeeeccccCCCCCcccchHHHHHHHHhhhcCChHH
Q 006008 31 VLIQSIISIKSIIKQDPSC--HEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVE 108 (665)
Q Consensus 31 VV~EsVvVIk~LLqk~P~~--~~~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~~e~ip~iaPdvLR~laksF~~E~~e 108 (665)
|-..++..+..|++..+.. ...++..|.+.+. -..+.-|.+.+|.+|..+.... ...+.+.++..+.+.+.+....
T Consensus 457 Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~-~~~~~~R~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~~l~d~~~~ 534 (588)
T 1b3u_A 457 IREAATSNLKKLVEKFGKEWAHATIIPKVLAMSG-DPNYLHRMTTLFCINVLSEVCG-QDITTKHMLPTVLRMAGDPVAN 534 (588)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHH-HHHHHHHTHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhhCCCCCch
Confidence 4444777788888876543 2455666665432 2356789999999998763100 0123456666677778899999
Q ss_pred HHHHHHHhhhheeeeccCCChhHH-HHHHHHHHHhhccCCCccchhhHHHH
Q 006008 109 TKLQILNTTIKVLLCAKGGDMWTI-TRLFSYLLELAECDLNYDVRDRARFF 158 (665)
Q Consensus 109 VKLQILtlaaKl~l~~p~e~~~~~-~~L~qyVL~LAkyD~nyDVRDRARfy 158 (665)
||..++.+..+++-.... ... ..+...+.. ...|.++|||..|.--
T Consensus 535 Vr~~a~~~l~~l~~~~~~---~~~~~~~~p~l~~-l~~d~d~~vr~~a~~a 581 (588)
T 1b3u_A 535 VRFNVAKSLQKIGPILDN---STLQSEVKPILEK-LTQDQDVDVKYFAQEA 581 (588)
T ss_dssp HHHHHHHHHHHHGGGSCH---HHHHHHHHHHHHH-HTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhch---hhhHHHHHHHHHH-HcCCCchhHHHHHHHH
Confidence 999999999888743321 111 233333333 3568899999988743
No 18
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=84.53 E-value=3.3 Score=39.76 Aligned_cols=125 Identities=8% Similarity=-0.001 Sum_probs=70.3
Q ss_pred eeeehHHHHHHHHhhCCCc----hHHHHHHHHhhcCCCCcccchhheeeeeccccCCCCCcccchHHHHHHHHhhhcCCh
Q 006008 31 VLIQSIISIKSIIKQDPSC----HEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEA 106 (665)
Q Consensus 31 VV~EsVvVIk~LLqk~P~~----~~~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~~e~ip~iaPdvLR~laksF~~E~ 106 (665)
|...+...|..|.+.-... +..++..|.+.+..- .+.-|.+..=.+...+... .+ +.++..+...+.+..
T Consensus 73 V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~-~~----~~ll~~l~~~l~~~~ 146 (242)
T 2qk2_A 73 LVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEK-KPNVVTALREAIDAIYAST-SL----EAQQESIVESLSNKN 146 (242)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTS-CH----HHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcC-CH----HHHHHHHHHHHcCCC
Confidence 4444555555555432221 244555555555432 2233332222222222111 12 344555555667788
Q ss_pred HHHHHHHHHhhhheeeec-cC-CChhHHHHHHHHHHHhhccCCCccchhhHHHHHHhh
Q 006008 107 VETKLQILNTTIKVLLCA-KG-GDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLF 162 (665)
Q Consensus 107 ~eVKLQILtlaaKl~l~~-p~-e~~~~~~~L~qyVL~LAkyD~nyDVRDRARfy~rLL 162 (665)
..||.+++.+...++-.. |. .....+..++.+++.+. .|.++.||+.|.-.-..+
T Consensus 147 ~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l-~D~~~~VR~~A~~~l~~l 203 (242)
T 2qk2_A 147 PSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTL-NEPDPTVRDSSAEALGTL 203 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHH
Confidence 999999999998876553 33 12235667778877775 477999999998744433
No 19
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=83.94 E-value=1.1 Score=41.25 Aligned_cols=145 Identities=13% Similarity=0.115 Sum_probs=90.8
Q ss_pred HHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCchHH-----HHHHHHhhcCCCCcccchhheeeeecc
Q 006008 5 CVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEK-----VIIQLFRSLDSIKVPEARVMIIWMVGE 79 (665)
Q Consensus 5 Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~~~-----iI~~Lak~ld~i~~P~ARAsIIWLIGE 79 (665)
++..|+.||.. .+..+..+++..|.+|...++..... .|..|.+.++.- ++..|...+|.++.
T Consensus 55 ~i~~L~~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~ 122 (210)
T 4db6_A 55 ALPALVQLLSS-----------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSN 122 (210)
T ss_dssp HHHHHHHHTTC-----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcC-----------CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHH
Confidence 56778888873 34556677888899998766654322 356777777654 57888899999999
Q ss_pred ccCCCCC-ccc-chHHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhH-HHHHHHHHHHhhccCCCccchhhHH
Q 006008 80 YSSVGVK-IPR-MLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWT-ITRLFSYLLELAECDLNYDVRDRAR 156 (665)
Q Consensus 80 Y~~~~e~-ip~-iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~-~~~L~qyVL~LAkyD~nyDVRDRAR 156 (665)
.+...+. ... +...++..+++-..+....||...+.+...+....+...... -...+..++++.+ +.++++|.+|.
T Consensus 123 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~ 201 (210)
T 4db6_A 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS-HENEKIQKEAQ 201 (210)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHH
Confidence 8742110 000 112345556666667788999998888877765433210000 0124566666665 45888998887
Q ss_pred HHHHhh
Q 006008 157 FFKKLF 162 (665)
Q Consensus 157 fy~rLL 162 (665)
..-+-|
T Consensus 202 ~aL~~l 207 (210)
T 4db6_A 202 EALEKL 207 (210)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655444
No 20
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=83.90 E-value=0.7 Score=52.71 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCch----HHHHHHHHhhcCCCCcccchhheeeeec
Q 006008 3 NTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCH----EKVIIQLFRSLDSIKVPEARVMIIWMVG 78 (665)
Q Consensus 3 ~~Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~----~~iI~~Lak~ld~i~~P~ARAsIIWLIG 78 (665)
+.|+..|+.++. +....|...++..+..|.+..+..+ ..++..|.+.++ ...+..|...+|.+|
T Consensus 628 ~~~~~~l~~~l~-----------~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~-~~~~~v~~~a~~alg 695 (852)
T 4fdd_A 628 SNILTLMYQCMQ-----------DKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN-PEFISVCNNATWAIG 695 (852)
T ss_dssp CCHHHHHHHHTT-----------CSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCC-TTSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhC-----------CCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcC-ccchHHHHHHHHHHH
Confidence 456777777775 3334455668888999998888754 345666677773 456889999999999
Q ss_pred cccCC-CCCcccchHHHHHHHHhhhcCC--hHHHHHHHHHhhhheeeeccC
Q 006008 79 EYSSV-GVKIPRMLTTVLKYLAWCFKSE--AVETKLQILNTTIKVLLCAKG 126 (665)
Q Consensus 79 EY~~~-~e~ip~iaPdvLR~laksF~~E--~~eVKLQILtlaaKl~l~~p~ 126 (665)
+++.. ++.+..+++.++..+.+-+.+- ...|+-....+..++....|.
T Consensus 696 ~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~ 746 (852)
T 4fdd_A 696 EISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ 746 (852)
T ss_dssp HHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHH
Confidence 98742 2223344566666666666543 457887788888888877654
No 21
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=79.52 E-value=1.9 Score=42.01 Aligned_cols=53 Identities=9% Similarity=-0.008 Sum_probs=32.7
Q ss_pred CcccchhheeeeeccccCCCCCcccchHHHHHHHHhhhcCChHHHHHHHHHhhhhe
Q 006008 65 KVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV 120 (665)
Q Consensus 65 ~~P~ARAsIIWLIGEY~~~~e~ip~iaPdvLR~laksF~~E~~eVKLQILtlaaKl 120 (665)
.++.-|...+|.+|..+. ..+...+.++..+.+-+.++...||.+.+.+..++
T Consensus 103 ~~~~vr~~a~~aL~~l~~---~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCK---KNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp SCHHHHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHhc---cCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 345667777777777642 11233455566666666777777777777766654
No 22
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=79.38 E-value=1.4 Score=40.68 Aligned_cols=58 Identities=12% Similarity=0.132 Sum_probs=35.7
Q ss_pred HHHHHHhhcCCCCcccchhheeeeeccccCCCCCcccchHHHHHHHHhhhcCChHHHHHHHHHhhhhe
Q 006008 53 VIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV 120 (665)
Q Consensus 53 iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~~e~ip~iaPdvLR~laksF~~E~~eVKLQILtlaaKl 120 (665)
.+..|.+.++. .+|.-|...+|.+|.+.. +...+.++ +-+.++...||.+.+.+..++
T Consensus 77 ~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~-----~~~~~~L~----~~l~d~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 77 AVEPLIKALKD-EDGWVRQSAAVALGQIGD-----ERAVEPLI----KALKDEDWFVRIAAAFALGEI 134 (201)
T ss_dssp GHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-----GGGHHHHH----HHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHhCc-----HHHHHHHH----HHHcCCCHHHHHHHHHHHHHh
Confidence 34455555543 456678888888877652 23344333 334577778888887777776
No 23
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=78.02 E-value=0.64 Score=44.15 Aligned_cols=136 Identities=14% Similarity=0.143 Sum_probs=84.3
Q ss_pred HHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCchH-----HHHHHHHhhcCCCCcccchhheeeeecc
Q 006008 5 CVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHE-----KVIIQLFRSLDSIKVPEARVMIIWMVGE 79 (665)
Q Consensus 5 Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~~-----~iI~~Lak~ld~i~~P~ARAsIIWLIGE 79 (665)
++..|+.||.. .+..+...++..|.+|....+.+.. .+|..|.+.++. ..+..|...+|.++.
T Consensus 97 ~i~~L~~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~ 164 (252)
T 4db8_A 97 ALPALVQLLSS-----------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSN 164 (252)
T ss_dssp HHHHHHHGGGC-----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHH
Confidence 57778888873 3455677788889999776554412 357788888865 367789999999998
Q ss_pred ccCCCCC-ccc-chHHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhHHHH-----HHHHHHHhhccCCCccch
Q 006008 80 YSSVGVK-IPR-MLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITR-----LFSYLLELAECDLNYDVR 152 (665)
Q Consensus 80 Y~~~~e~-ip~-iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~~~-----L~qyVL~LAkyD~nyDVR 152 (665)
.+...+. ... +...++..+++-..+....||...+.+...+....+. .... .+..++++.+. .++++|
T Consensus 165 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~~g~i~~L~~ll~~-~~~~v~ 239 (252)
T 4db8_A 165 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE----QKQAVKEAGALEKLEQLQSH-ENEKIQ 239 (252)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHH----HHHHHHHTTHHHHHHTTTTC-SSSHHH
T ss_pred HHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHH----HHHHHHHCCcHHHHHHHhCC-CCHHHH
Confidence 8742110 000 1122344455555667888888888777776543332 1111 34455555543 377887
Q ss_pred hhHHH
Q 006008 153 DRARF 157 (665)
Q Consensus 153 DRARf 157 (665)
.+|..
T Consensus 240 ~~A~~ 244 (252)
T 4db8_A 240 KEAQE 244 (252)
T ss_dssp HTHHH
T ss_pred HHHHH
Confidence 77753
No 24
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=77.86 E-value=1.9 Score=40.24 Aligned_cols=143 Identities=13% Similarity=0.064 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCchH-----HHHHHHHhhcCCCCcccchhheeeeec
Q 006008 4 TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHE-----KVIIQLFRSLDSIKVPEARVMIIWMVG 78 (665)
Q Consensus 4 ~Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~~-----~iI~~Lak~ld~i~~P~ARAsIIWLIG 78 (665)
.++..|+.+|.. .+..+...++..|.+|....+.... ..|..|.+.+.. ..+..|...+|.++
T Consensus 44 g~i~~L~~ll~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~ 111 (252)
T 4hxt_A 44 GGVEVLVKLLTS-----------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALA 111 (252)
T ss_dssp THHHHHHHHTTC-----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhC-----------CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 357778888873 3455667788889998876554322 347778888774 56889999999999
Q ss_pred cccCCCCCcccch-----HHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChh-HHHHHHHHHHHhhccCCCccch
Q 006008 79 EYSSVGVKIPRML-----TTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMW-TITRLFSYLLELAECDLNYDVR 152 (665)
Q Consensus 79 EY~~~~e~ip~ia-----PdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~-~~~~L~qyVL~LAkyD~nyDVR 152 (665)
..+.. -+... ..++..+++-+.+....|+...+.+...+-...+..... .-...+..++.+.+ +.++++|
T Consensus 112 ~l~~~---~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~ 187 (252)
T 4hxt_A 112 NIASG---PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQ 187 (252)
T ss_dssp HHTTS---CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHH
T ss_pred HHHcC---CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC-CCCHHHH
Confidence 98842 11111 124555666667788899999998888876544321000 00124566666665 4478888
Q ss_pred hhHHH-HHHhh
Q 006008 153 DRARF-FKKLF 162 (665)
Q Consensus 153 DRARf-y~rLL 162 (665)
..|-. ++.|.
T Consensus 188 ~~a~~~L~~l~ 198 (252)
T 4hxt_A 188 KEAARALANIA 198 (252)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 77754 44444
No 25
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=77.62 E-value=1.8 Score=39.87 Aligned_cols=84 Identities=15% Similarity=0.072 Sum_probs=54.0
Q ss_pred HHHHHHhhcCCCCcccchhheeeeeccccCCCCCcccchHHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhHH
Q 006008 53 VIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI 132 (665)
Q Consensus 53 iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~~e~ip~iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~ 132 (665)
.+..|.+.+. -.+|.-|...+|.+|.+.. +...|.++ +-+.++...||.+.+.+..++- +.
T Consensus 108 ~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~-----~~~~~~L~----~~l~d~~~~vr~~A~~aL~~~~------~~--- 168 (201)
T 3ltj_A 108 AVEPLIKALK-DEDWFVRIAAAFALGEIGD-----ERAVEPLI----KALKDEDGWVRQSAADALGEIG------GE--- 168 (201)
T ss_dssp GHHHHHHHTT-CSSHHHHHHHHHHHHHHTC-----GGGHHHHH----HHTTCSSHHHHHHHHHHHHHHC------SH---
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHhCC-----HHHHHHHH----HHHcCCCHHHHHHHHHHHHHhC------ch---
Confidence 4455555553 2367789999999999853 33444443 3446788999999999998872 11
Q ss_pred HHHHHHHHHhhccCCCccchhhHHH
Q 006008 133 TRLFSYLLELAECDLNYDVRDRARF 157 (665)
Q Consensus 133 ~~L~qyVL~LAkyD~nyDVRDRARf 157 (665)
.....+..+. .|.++.||..|..
T Consensus 169 -~~~~~L~~~l-~d~~~~vr~~A~~ 191 (201)
T 3ltj_A 169 -RVRAAMEKLA-ETGTGFARKVAVN 191 (201)
T ss_dssp -HHHHHHHHHH-HHCCHHHHHHHHH
T ss_pred -hHHHHHHHHH-hCCCHHHHHHHHH
Confidence 2233333333 3557889988864
No 26
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=77.37 E-value=1.9 Score=44.10 Aligned_cols=147 Identities=9% Similarity=0.060 Sum_probs=88.6
Q ss_pred HHHHHHHHHhhccccccccCCCC--CcceeeehHHHHHHHHhhC-CCc----hHHHHHHHHhhcCCCC-cccchhheeee
Q 006008 5 CVEGLLALIRQELLTSDIESGNG--EADVLIQSIISIKSIIKQD-PSC----HEKVIIQLFRSLDSIK-VPEARVMIIWM 76 (665)
Q Consensus 5 Cl~~Ll~Ll~~~~~~~~~~~~~~--~~~VV~EsVvVIk~LLqk~-P~~----~~~iI~~Lak~ld~i~-~P~ARAsIIWL 76 (665)
.+..|+.++. +. +..+..-++.+++.|...+ |.. ...++..+.+.+..-. .+.-|...+|.
T Consensus 129 ll~~L~~~l~-----------~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~ 197 (462)
T 1ibr_B 129 LIPQLVANVT-----------NPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNA 197 (462)
T ss_dssp HHHHHHHHHH-----------CTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHhc-----------cCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 4556666665 23 3334444778899999876 321 2456667777776554 56778888888
Q ss_pred eccccCCC-CCccc--chHHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhHHH-HHHHHHHHhhccCCCccch
Q 006008 77 VGEYSSVG-VKIPR--MLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTIT-RLFSYLLELAECDLNYDVR 152 (665)
Q Consensus 77 IGEY~~~~-e~ip~--iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~~-~L~qyVL~LAkyD~nyDVR 152 (665)
++...... +.... ..+.+++.+.+...+....||.+++.+...+.-..+..-...+. .+++.++...+ |.+.+||
T Consensus 198 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~ 276 (462)
T 1ibr_B 198 LLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVA 276 (462)
T ss_dssp HHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH-CSSHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHH
Confidence 87633100 01111 12334555555667788899998888877776555431111233 56666665544 5578999
Q ss_pred hhHHHHHHhhc
Q 006008 153 DRARFFKKLFS 163 (665)
Q Consensus 153 DRARfy~rLLs 163 (665)
-.|.-+|.-+.
T Consensus 277 ~~a~~~l~~~~ 287 (462)
T 1ibr_B 277 LQGIEFWSNVC 287 (462)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877776554
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=76.95 E-value=2.6 Score=39.41 Aligned_cols=145 Identities=14% Similarity=0.078 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCchH-----HHHHHHHhhcCCCCcccchhheeeeecc
Q 006008 5 CVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHE-----KVIIQLFRSLDSIKVPEARVMIIWMVGE 79 (665)
Q Consensus 5 Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~~-----~iI~~Lak~ld~i~~P~ARAsIIWLIGE 79 (665)
.+..|+.+|. +.+..+...++.+|.+|.+..|.... ..+..|.+.+.. ..+..|...+|.++.
T Consensus 87 ~i~~l~~ll~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 87 GVEVLVKLLT-----------STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALAN 154 (252)
T ss_dssp HHHHHHHHTT-----------CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 4667777776 34455677788889999876665322 346777777764 347889999999998
Q ss_pred ccCCCCCc--ccchHHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhHH--HHHHHHHHHhhccCCCccchhhH
Q 006008 80 YSSVGVKI--PRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI--TRLFSYLLELAECDLNYDVRDRA 155 (665)
Q Consensus 80 Y~~~~e~i--p~iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~--~~L~qyVL~LAkyD~nyDVRDRA 155 (665)
.+...+.. .-+...++..+++-+.+....||...+.+...+....+... ..+ ..++..++++.+ +.++++|..|
T Consensus 155 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~i~~L~~ll~-~~~~~v~~~a 232 (252)
T 4hxt_A 155 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAI-KAIVDAGGVEVLQKLLT-STDSEVQKEA 232 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHH-HHHHHTTHHHHHHHGGG-CSCHHHHHHH
T ss_pred HHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH-HHHHHCCCHHHHHHHHC-CCcHHHHHHH
Confidence 87421100 00112345556666667788999998888877765443210 000 124566777765 3478888887
Q ss_pred HH-HHHhhc
Q 006008 156 RF-FKKLFS 163 (665)
Q Consensus 156 Rf-y~rLLs 163 (665)
.. ++.|..
T Consensus 233 ~~~L~~l~~ 241 (252)
T 4hxt_A 233 QRALENIKS 241 (252)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 65 444443
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=76.24 E-value=1.9 Score=40.90 Aligned_cols=145 Identities=13% Similarity=0.135 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCchHH-----HHHHHHhhcCCCCcccchhheeeeecc
Q 006008 5 CVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEK-----VIIQLFRSLDSIKVPEARVMIIWMVGE 79 (665)
Q Consensus 5 Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~~~-----iI~~Lak~ld~i~~P~ARAsIIWLIGE 79 (665)
++..|+.+|.. .+..+..+++..|.+|....+..... .|..|.+.+.. ..+..|...+|.+|.
T Consensus 55 ~i~~L~~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~ 122 (252)
T 4db8_A 55 ALPALVQLLSS-----------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSN 122 (252)
T ss_dssp HHHHHHHGGGC-----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcC-----------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 56677888873 33456677888899998766553322 57788888876 568899999999998
Q ss_pred ccCCCCCc-c-cchHHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhHH-HHHHHHHHHhhccCCCccchhhHH
Q 006008 80 YSSVGVKI-P-RMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI-TRLFSYLLELAECDLNYDVRDRAR 156 (665)
Q Consensus 80 Y~~~~e~i-p-~iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~-~~L~qyVL~LAkyD~nyDVRDRAR 156 (665)
.+...+.. . -+...++..+++-..+....||...+.+...+....+......+ ..++..++++.+. .++++|..|-
T Consensus 123 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~ 201 (252)
T 4db8_A 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEAL 201 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC-SSHHHHHHHH
T ss_pred hhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC-CCHHHHHHHH
Confidence 87521110 0 01123555666666778889999988888877654422100000 1234556666553 3788888765
Q ss_pred H-HHHhh
Q 006008 157 F-FKKLF 162 (665)
Q Consensus 157 f-y~rLL 162 (665)
. ++.|.
T Consensus 202 ~~L~~l~ 208 (252)
T 4db8_A 202 WALSNIA 208 (252)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 4 45454
No 29
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.52 E-value=2.4 Score=39.43 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCchHHHHHHHHhhcCCCCcccchhheeeeeccccCC
Q 006008 4 TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSV 83 (665)
Q Consensus 4 ~Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~~~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~ 83 (665)
.++..|+.+|. +.+..|-..++..|..+ .. ...+..|.+.+.. .+|.-|...+|.+|.+..
T Consensus 50 ~~~~~L~~~l~-----------~~~~~vr~~a~~aL~~~---~~---~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~- 110 (211)
T 3ltm_A 50 RAVEPLIKALK-----------DEDAWVRRAAADALGQI---GD---ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD- 110 (211)
T ss_dssp GGHHHHHHHTT-----------CSCHHHHHHHHHHHHHH---CC---GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHc-----------CCCHHHHHHHHHHHHhh---CC---HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc-
Confidence 34566777765 23333333344444333 22 1234444444432 345667777777776642
Q ss_pred CCCcccchHHHHHHHHhhhcCChHHHHHHHHHhhhhe
Q 006008 84 GVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV 120 (665)
Q Consensus 84 ~e~ip~iaPdvLR~laksF~~E~~eVKLQILtlaaKl 120 (665)
+...|.++ +-+.++...||.+.+.+..++
T Consensus 111 ----~~~~~~L~----~~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 111 ----ERAVEPLI----KALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp ----GGGHHHHH----HHTTCSSHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHH----HHHhCCCHHHHHHHHHHHHHc
Confidence 22233222 333566666666666666555
No 30
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.41 E-value=2.1 Score=39.78 Aligned_cols=91 Identities=12% Similarity=0.077 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCchHHHHHHHHhhcCCCCcccchhheeeeeccccCC
Q 006008 4 TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSV 83 (665)
Q Consensus 4 ~Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~~~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~ 83 (665)
..+..|+.+|. +.+..|-..++..|.. ... ...+..|.+.+.. .++.-|...+|.+|++..
T Consensus 19 ~~~~~L~~~L~-----------~~~~~vR~~A~~~L~~---~~~---~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQ-----------DDSYYVRRAAAYALGK---IGD---ERAVEPLIKALKD-EDAWVRRAAADALGQIGD- 79 (211)
T ss_dssp GGHHHHHHHTT-----------CSSHHHHHHHHHHHHH---HCC---GGGHHHHHHHTTC-SCHHHHHHHHHHHHHHCC-
T ss_pred hHHHHHHHHHc-----------CCCHHHHHHHHHHHHH---hCC---ccHHHHHHHHHcC-CCHHHHHHHHHHHHhhCC-
Confidence 45778888887 3444444444444443 333 2456666676664 468899999999999863
Q ss_pred CCCcccchHHHHHHHHhhhcCChHHHHHHHHHhhhhee
Q 006008 84 GVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVL 121 (665)
Q Consensus 84 ~e~ip~iaPdvLR~laksF~~E~~eVKLQILtlaaKl~ 121 (665)
+...|.++ +-+.++...||...+.+..++-
T Consensus 80 ----~~~~~~L~----~~l~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 80 ----ERAVEPLI----KALKDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp ----GGGHHHHH----HHTTCSSHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHH----HHHcCCCHHHHHHHHHHHHHhC
Confidence 33344433 4557888999999998888763
No 31
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=75.09 E-value=2.1 Score=42.48 Aligned_cols=129 Identities=10% Similarity=0.039 Sum_probs=73.4
Q ss_pred ceeeehHHHHHHHHhhCC-Cch-----HHHHHHHHhhcCCCCc---ccchhheeeeeccccCCCCCccc-chHHHHHHHH
Q 006008 30 DVLIQSIISIKSIIKQDP-SCH-----EKVIIQLFRSLDSIKV---PEARVMIIWMVGEYSSVGVKIPR-MLTTVLKYLA 99 (665)
Q Consensus 30 ~VV~EsVvVIk~LLqk~P-~~~-----~~iI~~Lak~ld~i~~---P~ARAsIIWLIGEY~~~~e~ip~-iaPdvLR~la 99 (665)
.|+..+...|..|...-. ..+ ..++..|...+..-+. ..|.+++.-++.. ++ +..+. ..++++..+.
T Consensus 76 ~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~--~~~~~~~l~~ll~~l~ 152 (249)
T 2qk1_A 76 QAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YD--PLASSGRNEDMLKDIL 152 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SC--TTCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-cc--ccccCCcHHHHHHHHH
Confidence 345556666666665433 222 2334444444433221 2355565555543 31 11111 1456777777
Q ss_pred hhhcCChHHHHHHHHHhhhheeeeccCCCh---hHH-HHHHHHHHHhhccCCCccchhhHHHHHHhh
Q 006008 100 WCFKSEAVETKLQILNTTIKVLLCAKGGDM---WTI-TRLFSYLLELAECDLNYDVRDRARFFKKLF 162 (665)
Q Consensus 100 ksF~~E~~eVKLQILtlaaKl~l~~p~e~~---~~~-~~L~qyVL~LAkyD~nyDVRDRARfy~rLL 162 (665)
..+......||.+.|++.+.++-..+.... ..+ ..++..+.++- .|.+++||+.|..--..+
T Consensus 153 ~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l-~D~~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 153 EHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV-NDTQPAIRTIGFESFAIL 218 (249)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence 788888889999999999998866553100 123 44555555443 577999999998844443
No 32
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=75.09 E-value=2.5 Score=36.96 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=49.5
Q ss_pred HHHHHhhcCCCCcccchhheeeeeccccCCCCCcccchHHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhHHH
Q 006008 54 IIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTIT 133 (665)
Q Consensus 54 I~~Lak~ld~i~~P~ARAsIIWLIGEY~~~~e~ip~iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~~ 133 (665)
+..|.+.++. .+|..|...+|.+|.... +...|.++ +-+.++...||...+.+..++- +.
T Consensus 44 ~~~L~~~L~d-~~~~vR~~A~~aL~~~~~-----~~a~~~L~----~~L~d~~~~VR~~A~~aL~~~~------~~---- 103 (131)
T 1te4_A 44 FEPLLESLSN-EDWRIRGAAAWIIGNFQD-----ERAVEPLI----KLLEDDSGFVRSGAARSLEQIG------GE---- 103 (131)
T ss_dssp HHHHHHGGGC-SCHHHHHHHHHHHGGGCS-----HHHHHHHH----HHHHHCCTHHHHHHHHHHHHHC------SH----
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHhcCC-----HHHHHHHH----HHHcCCCHHHHHHHHHHHHHhC------cH----
Confidence 4666676664 567788888888888752 22333333 3335677888888888877763 11
Q ss_pred HHHHHHHHhhccCCCccchhhHH
Q 006008 134 RLFSYLLELAECDLNYDVRDRAR 156 (665)
Q Consensus 134 ~L~qyVL~LAkyD~nyDVRDRAR 156 (665)
..+..++.+.+ |.++.||..|.
T Consensus 104 ~a~~~L~~~l~-d~~~~vr~~A~ 125 (131)
T 1te4_A 104 RVRAAMEKLAE-TGTGFARKVAV 125 (131)
T ss_dssp HHHHHHHHHTT-SCCTHHHHHHH
T ss_pred HHHHHHHHHHh-CCCHHHHHHHH
Confidence 12333333333 66777777664
No 33
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=74.75 E-value=3.9 Score=39.72 Aligned_cols=125 Identities=11% Similarity=0.047 Sum_probs=74.1
Q ss_pred HHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCchHHHHHHHHhhcCCCCcccchhheeeeeccccCCC
Q 006008 5 CVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVG 84 (665)
Q Consensus 5 Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~~~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~~ 84 (665)
.+..|+.+|. +.+..|-..++..|..+ . ...++..|.+.++. .++..|...+|.+|.....
T Consensus 24 ~i~~L~~~L~-----------~~~~~vr~~A~~~L~~~---~---~~~~~~~L~~~l~d-~~~~vR~~A~~aL~~l~~~- 84 (280)
T 1oyz_A 24 NDDELFRLLD-----------DHNSLKRISSARVLQLR---G---GQDAVRLAIEFCSD-KNYIRRDIGAFILGQIKIC- 84 (280)
T ss_dssp CHHHHHHHTT-----------CSSHHHHHHHHHHHHHH---C---CHHHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCC-
T ss_pred hHHHHHHHHH-----------cCCHHHHHHHHHHHHcc---C---CchHHHHHHHHHcC-CCHHHHHHHHHHHHHhccc-
Confidence 3567788876 34444444455555544 2 24567777777764 3577889999999998632
Q ss_pred CCcccchHHHHHHHHh-hhcCChHHHHHHHHHhhhheeeeccCCChhHHHHHHHHHHHhhccCCCccchhhHH
Q 006008 85 VKIPRMLTTVLKYLAW-CFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRAR 156 (665)
Q Consensus 85 e~ip~iaPdvLR~lak-sF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~~~L~qyVL~LAkyD~nyDVRDRAR 156 (665)
+...+.++..+.+ -..++...||...+.+..++.-..+.. ...++..++.+. .|.++.||-.|-
T Consensus 85 ---~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l-~d~~~~vR~~a~ 149 (280)
T 1oyz_A 85 ---KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITA-FDKSTNVRRATA 149 (280)
T ss_dssp ---TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHT-TCSCHHHHHHHH
T ss_pred ---cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHh-hCCCHHHHHHHH
Confidence 2234455554432 245778899999999988875433211 123344444433 355666665543
No 34
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=73.92 E-value=1 Score=46.28 Aligned_cols=146 Identities=10% Similarity=0.111 Sum_probs=89.5
Q ss_pred HHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhh--CCCch----H-HHHHHHHhhcCCCCcccchhheeeee
Q 006008 5 CVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQ--DPSCH----E-KVIIQLFRSLDSIKVPEARVMIIWMV 77 (665)
Q Consensus 5 Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk--~P~~~----~-~iI~~Lak~ld~i~~P~ARAsIIWLI 77 (665)
++..|+++|.. .+..+...++..|++|+.+ +|... . .+|..|.+.+..-..+..|...+|.+
T Consensus 21 ~l~~l~~~l~s-----------~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L 89 (450)
T 2jdq_A 21 ITSDMIEMIFS-----------KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVL 89 (450)
T ss_dssp -CHHHHHHHHS-----------SCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35668888862 4455666789999999874 33211 1 56888888887766788999999999
Q ss_pred ccccCCC-CCccc-chHHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhHH--HHHHHHHHHhhccCCCccchh
Q 006008 78 GEYSSVG-VKIPR-MLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI--TRLFSYLLELAECDLNYDVRD 153 (665)
Q Consensus 78 GEY~~~~-e~ip~-iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~--~~L~qyVL~LAkyD~nyDVRD 153 (665)
+..+... +.... +...++..+++-+.+....||.+.+.+...+--..+.. ...+ ..++..++.+.+.+.+.++|.
T Consensus 90 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~~l~~~~~~~v~~ 168 (450)
T 2jdq_A 90 TNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMC-RDYVLDCNILPPLLQLFSKQNRLTMTR 168 (450)
T ss_dssp HHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTCHHHHHHHTTSCCCHHHHH
T ss_pred HHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHH-HHHHHHCCCHHHHHHHhcCCCCHHHHH
Confidence 8876411 00000 11234555555666788899999888877765433210 0001 124566666666556778887
Q ss_pred hHHH-HHHhh
Q 006008 154 RARF-FKKLF 162 (665)
Q Consensus 154 RARf-y~rLL 162 (665)
.|-. ++.|.
T Consensus 169 ~a~~~L~~l~ 178 (450)
T 2jdq_A 169 NAVWALSNLC 178 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7643 44444
No 35
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=69.50 E-value=7.1 Score=39.83 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=67.2
Q ss_pred cceeeehHHHHHHHHhh-CCC-chHHHHHHHHhhcCCCC-cccchhheeeeeccccCC--CCCcccchHHHHHHHHhhhc
Q 006008 29 ADVLIQSIISIKSIIKQ-DPS-CHEKVIIQLFRSLDSIK-VPEARVMIIWMVGEYSSV--GVKIPRMLTTVLKYLAWCFK 103 (665)
Q Consensus 29 ~~VV~EsVvVIk~LLqk-~P~-~~~~iI~~Lak~ld~i~-~P~ARAsIIWLIGEY~~~--~e~ip~iaPdvLR~laksF~ 103 (665)
..+ ..+..+|..|.+. .|. ....++..|...+..-. ++..|...++.+|..+.. .+......+.++..+.+.+.
T Consensus 104 ~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~ 182 (462)
T 1ibr_B 104 YRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMR 182 (462)
T ss_dssp SSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHS
T ss_pred chh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhC
Confidence 456 6777778888877 464 56788888888887643 678888888888876631 12234567788888888888
Q ss_pred CC--hHHHHHHHHHhhhhe
Q 006008 104 SE--AVETKLQILNTTIKV 120 (665)
Q Consensus 104 ~E--~~eVKLQILtlaaKl 120 (665)
++ ...||.+.+.+...+
T Consensus 183 ~~~~~~~vr~~a~~~l~~~ 201 (462)
T 1ibr_B 183 KEEPSNNVKLAATNALLNS 201 (462)
T ss_dssp TTCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 88 689999988877664
No 36
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=69.25 E-value=3.5 Score=44.00 Aligned_cols=137 Identities=11% Similarity=0.122 Sum_probs=85.9
Q ss_pred HHHHHHHHHhhccccccccCCCCC-cceeeehHHHHHHHHhhCCCchH-----HHHHHHHhhcCCCCcccchhheeeeec
Q 006008 5 CVEGLLALIRQELLTSDIESGNGE-ADVLIQSIISIKSIIKQDPSCHE-----KVIIQLFRSLDSIKVPEARVMIIWMVG 78 (665)
Q Consensus 5 Cl~~Ll~Ll~~~~~~~~~~~~~~~-~~VV~EsVvVIk~LLqk~P~~~~-----~iI~~Lak~ld~i~~P~ARAsIIWLIG 78 (665)
.+..|+.+|.. .+ ..+..+++..|.+|....+.... .+|..|.++|.. ..+.-|...+|.+|
T Consensus 118 ~v~~Lv~lL~~-----------~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~aL~ 185 (528)
T 4b8j_A 118 VVPRFVQFLTR-----------EDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS-SSDDVREQAVWALG 185 (528)
T ss_dssp CHHHHHHHHTC-----------TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHH
T ss_pred CHHHHHHHhCC-----------CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence 45667777763 22 44566688889888876554322 257778888876 57788999999999
Q ss_pred cccCCCCCcccchH-----HHHHHHHhhh-cCChHHHHHHHHHhhhheeeeccCCChhHHHHHHHHHHHhhccCCCccch
Q 006008 79 EYSSVGVKIPRMLT-----TVLKYLAWCF-KSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVR 152 (665)
Q Consensus 79 EY~~~~e~ip~iaP-----dvLR~laksF-~~E~~eVKLQILtlaaKl~l~~p~e~~~~~~~L~qyVL~LAkyD~nyDVR 152 (665)
..+... +.... .++..+++-+ .+....|+...+.+...+....|.........++..++.+.+ +.++++|
T Consensus 186 ~l~~~~---~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~ 261 (528)
T 4b8j_A 186 NVAGDS---PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH-SNDEEVL 261 (528)
T ss_dssp HHHHTC---HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT-CCCHHHH
T ss_pred HHhCCC---hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC-CCCHHHH
Confidence 887421 11111 1233444444 456788888888888877766554443344556667776664 3367777
Q ss_pred hhHHH
Q 006008 153 DRARF 157 (665)
Q Consensus 153 DRARf 157 (665)
-.|-.
T Consensus 262 ~~a~~ 266 (528)
T 4b8j_A 262 TDACW 266 (528)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 37
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=68.26 E-value=3.6 Score=43.51 Aligned_cols=129 Identities=11% Similarity=-0.000 Sum_probs=79.2
Q ss_pred cceeeehHHHHHHHHhhCCCch-HHHHHHHHhhcCCCCcccchhheeeeeccccCCCCCcccchHHHHHHHHhhhcCChH
Q 006008 29 ADVLIQSIISIKSIIKQDPSCH-EKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAV 107 (665)
Q Consensus 29 ~~VV~EsVvVIk~LLqk~P~~~-~~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~~e~ip~iaPdvLR~laksF~~E~~ 107 (665)
..|-..++..|.+|....|... ...+..+.+.+-.-..+..|.+.+-++|.++.... +.+.+.++..+..-..++..
T Consensus 101 ~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~--~~~~~~l~~~l~~l~~d~~~ 178 (588)
T 1b3u_A 101 TVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS--SAVKAELRQYFRNLCSDDTP 178 (588)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC--HHHHHHHHHHHHHHHTCSCH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHhCCCCH
Confidence 3344447788999998887642 22222222222222456788877777777764211 23455666666666789999
Q ss_pred HHHHHHHHhhhheeeeccCCChhHHHHHHHHHHHhhccCCCccchhhHHHHHHhh
Q 006008 108 ETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLF 162 (665)
Q Consensus 108 eVKLQILtlaaKl~l~~p~e~~~~~~~L~qyVL~LAkyD~nyDVRDRARfy~rLL 162 (665)
.||.+.+....++.-..+.+ .....++.+++.+.. |.++.+|..|-.-..-+
T Consensus 179 ~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~-d~~~~vr~~a~~~l~~l 230 (588)
T 1b3u_A 179 MVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLAS-DEQDSVRLLAVEACVNI 230 (588)
T ss_dssp HHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHT-CSCHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHH
Confidence 99999999888875433321 123456666666654 55789999876544333
No 38
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=68.22 E-value=2.1 Score=45.67 Aligned_cols=146 Identities=8% Similarity=0.060 Sum_probs=88.3
Q ss_pred HHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCch------HHHHHHHHhhcCCCCcccchhheeeeecc
Q 006008 6 VEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCH------EKVIIQLFRSLDSIKVPEARVMIIWMVGE 79 (665)
Q Consensus 6 l~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~------~~iI~~Lak~ld~i~~P~ARAsIIWLIGE 79 (665)
+..|+.+|.. .+..+..+|+..|++|+...+... ..+|..|.+.|..-..|..|...+|.++.
T Consensus 76 l~~lv~~L~s-----------~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~ 144 (528)
T 4b8j_A 76 LPAMIGGVYS-----------DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTN 144 (528)
T ss_dssp HHHHHHHHTS-----------SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-----------CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 4557777762 345566678999999998765322 23577888888876668899999999998
Q ss_pred ccCCCCCcc-c-chHHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhHHH--HHHHHHHHhhccCCCccchhhH
Q 006008 80 YSSVGVKIP-R-MLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTIT--RLFSYLLELAECDLNYDVRDRA 155 (665)
Q Consensus 80 Y~~~~e~ip-~-iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~~--~L~qyVL~LAkyD~nyDVRDRA 155 (665)
.+....... . +...++..|++-+.+....||.+.+.+..++....+.. ...+. ..+..++.+.+.+.+.++|..|
T Consensus 145 l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~-~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a 223 (528)
T 4b8j_A 145 IASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC-RDLVLANGALLPLLAQLNEHTKLSMLRNA 223 (528)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH-HHHHHHTTCHHHHHHTCCTTCCHHHHHHH
T ss_pred HhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh-HHHHHHCCcHHHHHHHHhcCCCHHHHHHH
Confidence 875211000 0 01124445555566778899999988888775433210 00111 1355666666555566665554
Q ss_pred H-HHHHhhc
Q 006008 156 R-FFKKLFS 163 (665)
Q Consensus 156 R-fy~rLLs 163 (665)
- .++.|..
T Consensus 224 ~~~L~~L~~ 232 (528)
T 4b8j_A 224 TWTLSNFCR 232 (528)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHc
Confidence 3 3444443
No 39
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=67.59 E-value=6.6 Score=43.83 Aligned_cols=114 Identities=10% Similarity=0.074 Sum_probs=72.6
Q ss_pred eeeehHHHHHHHHhhCCCch----HHHHHHHHhhcCCCCcccchhheeeeeccccC-CCCCcccchHHHHHHHHhhhcCC
Q 006008 31 VLIQSIISIKSIIKQDPSCH----EKVIIQLFRSLDSIKVPEARVMIIWMVGEYSS-VGVKIPRMLTTVLKYLAWCFKSE 105 (665)
Q Consensus 31 VV~EsVvVIk~LLqk~P~~~----~~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~-~~e~ip~iaPdvLR~laksF~~E 105 (665)
+-.+++..|..|.......+ ..++..|.+.+. -.++..|...++++|..+. .++.+..+++.++..+.+.+.++
T Consensus 614 v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 692 (861)
T 2bpt_A 614 IEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN-QVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNP 692 (861)
T ss_dssp THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCc
Confidence 34445666777776655443 455666676663 4577889999999887653 22233345677777777888776
Q ss_pred h--HHHHHHHHHhhhheeeeccCCChhHHHHHHHHHHHhhcc
Q 006008 106 A--VETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAEC 145 (665)
Q Consensus 106 ~--~eVKLQILtlaaKl~l~~p~e~~~~~~~L~qyVL~LAky 145 (665)
. ..||..++.+...+....+..-..-+..++..++..+.+
T Consensus 693 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~ 734 (861)
T 2bpt_A 693 NARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNT 734 (861)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC
T ss_pred cccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc
Confidence 4 789998888877665544432222345666666666654
No 40
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=66.74 E-value=8.8 Score=45.66 Aligned_cols=125 Identities=12% Similarity=0.084 Sum_probs=80.0
Q ss_pred hHHHHHHHHhhCCCc----------hHHHHHHHHhhcCCCCcccchhheeeeeccccCC-CCCcccchHHHHHHHHhhhc
Q 006008 35 SIISIKSIIKQDPSC----------HEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSV-GVKIPRMLTTVLKYLAWCFK 103 (665)
Q Consensus 35 sVvVIk~LLqk~P~~----------~~~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~-~e~ip~iaPdvLR~laksF~ 103 (665)
+...|..|....+.. +..++..|.+.++.-..+..|...+-++++.+.. +..+....+.++..+.+.+.
T Consensus 106 a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~ 185 (1230)
T 1u6g_C 106 SSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT 185 (1230)
T ss_dssp HHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHc
Confidence 666788888776653 6788888988887544667888777777776631 12233357889999999999
Q ss_pred CChHHHHHHHHHhhhheeeeccCCChhHHHHHHHHHHHhhccCCCccchhhHHHHHHhh
Q 006008 104 SEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLF 162 (665)
Q Consensus 104 ~E~~eVKLQILtlaaKl~l~~p~e~~~~~~~L~qyVL~LAkyD~nyDVRDRARfy~rLL 162 (665)
++...||.+.+.+...+.-..+... +..++.++++..+-+.+.++|..+--.+..+
T Consensus 186 ~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l 241 (1230)
T 1u6g_C 186 SPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKNDSMSTTRTYIQCIAAI 241 (1230)
T ss_dssp CSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 9999999999988887765443321 1223333333333333456777665544444
No 41
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=65.56 E-value=3.5 Score=42.24 Aligned_cols=140 Identities=13% Similarity=0.151 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCch-----HHHHHHHHhhcCCCCcccchhheeeeec
Q 006008 4 TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCH-----EKVIIQLFRSLDSIKVPEARVMIIWMVG 78 (665)
Q Consensus 4 ~Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~-----~~iI~~Lak~ld~i~~P~ARAsIIWLIG 78 (665)
.++..|+.||.. .+..|..+++..|.+|....|..- ..+|..|.+.+..-..+..|...+|.+|
T Consensus 107 ~~i~~L~~lL~~-----------~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~ 175 (450)
T 2jdq_A 107 GAVPIFIELLSS-----------EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALS 175 (450)
T ss_dssp THHHHHHHHTTC-----------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcC-----------CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 356777788762 344556668888999987665321 1347788888876566788999999999
Q ss_pred cccCCC-CC-cccchHHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhHH--HHHHHHHHHhhccCCCccchhh
Q 006008 79 EYSSVG-VK-IPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI--TRLFSYLLELAECDLNYDVRDR 154 (665)
Q Consensus 79 EY~~~~-e~-ip~iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~--~~L~qyVL~LAkyD~nyDVRDR 154 (665)
..+... .. -..+...++..+++-..+++..|+...+.+...+.-..+. ....+ ..++..++.+.+ +.++++|..
T Consensus 176 ~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~-~~~~~v~~~ 253 (450)
T 2jdq_A 176 NLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPND-KIQAVIDAGVCRRLVELLM-HNDYKVVSP 253 (450)
T ss_dssp HHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHH-HHHHHHHTTTHHHHHHHTT-CSCHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcH-HHHHHHHcCcHHHHHHHHC-CCchhHHHH
Confidence 887421 10 0111233344444445567778887777666665432211 00000 124455555554 446777766
Q ss_pred HH
Q 006008 155 AR 156 (665)
Q Consensus 155 AR 156 (665)
|-
T Consensus 254 a~ 255 (450)
T 2jdq_A 254 AL 255 (450)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 42
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=62.94 E-value=5.8 Score=39.74 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=69.4
Q ss_pred CCCcce-eeehHHHHHHHHhhCCCchHHHHHHHHhhcC-------------------------------------CCCcc
Q 006008 26 NGEADV-LIQSIISIKSIIKQDPSCHEKVIIQLFRSLD-------------------------------------SIKVP 67 (665)
Q Consensus 26 ~~~~~V-V~EsVvVIk~LLqk~P~~~~~iI~~Lak~ld-------------------------------------~i~~P 67 (665)
|.+-+. ..-|+.+|-.|.+.||+-|+-.+..|.-.+. .+-+|
T Consensus 42 DDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfanyrigd~ 121 (253)
T 2db0_A 42 DDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDE 121 (253)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSH
T ss_pred ccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcCCc
Confidence 455443 4449999999999999988777766554431 24567
Q ss_pred cchhheeeeeccccCCCCCcccchHHHHHHHHhhhcCChHHHHHHHHHhhhheeeec
Q 006008 68 EARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCA 124 (665)
Q Consensus 68 ~ARAsIIWLIGEY~~~~e~ip~iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~ 124 (665)
.+|-.|-+-+||... .-|..++.|.|.+.--..+-..+=|+..||+..-+-...
T Consensus 122 kikIn~~yaLeeIar---anP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 122 KTKINVSYALEEIAK---ANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp HHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred cceecHHHHHHHHHH---hChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 778788888888753 247778888888776677778899999999887665443
No 43
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=62.33 E-value=2.3 Score=50.60 Aligned_cols=116 Identities=13% Similarity=0.143 Sum_probs=64.8
Q ss_pred ehHHHHHHHHhhCCCc-hHHHHHHHHhhcCCCCcccchhheeeeeccccC-CCCCcccchHHHHHHHHhhhcCChHHHHH
Q 006008 34 QSIISIKSIIKQDPSC-HEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSS-VGVKIPRMLTTVLKYLAWCFKSEAVETKL 111 (665)
Q Consensus 34 EsVvVIk~LLqk~P~~-~~~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~-~~e~ip~iaPdvLR~laksF~~E~~eVKL 111 (665)
.++..|..+...-+.. +..++..|.+.+..-..+..|...+..+|..+. .+..+....+.++..+.+.+.++.++||.
T Consensus 194 ~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~ 273 (1230)
T 1u6g_C 194 RTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELRE 273 (1230)
T ss_dssp HHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 3666677777665543 345566676666444445677777777776543 11112123345555566666788888887
Q ss_pred HHHHhhhheeeeccCCChhHHHHHHHHHHHhhccCCCc
Q 006008 112 QILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNY 149 (665)
Q Consensus 112 QILtlaaKl~l~~p~e~~~~~~~L~qyVL~LAkyD~ny 149 (665)
..+.+...+.-..+.+-..-+..++..+++..+||.+|
T Consensus 274 ~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~ 311 (1230)
T 1u6g_C 274 YCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNY 311 (1230)
T ss_dssp HHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---
T ss_pred HHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCC
Confidence 76666555443334332234566777777777776543
No 44
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=60.87 E-value=2.2 Score=45.72 Aligned_cols=138 Identities=16% Similarity=0.115 Sum_probs=81.0
Q ss_pred HHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCch-----HHHHHHHHhhcCCCCcccchhheeeeecc
Q 006008 5 CVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCH-----EKVIIQLFRSLDSIKVPEARVMIIWMVGE 79 (665)
Q Consensus 5 Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~-----~~iI~~Lak~ld~i~~P~ARAsIIWLIGE 79 (665)
++..|+.||.. .+..|...++..|.+|....|... ..+|..|.+.+.. ..+..|...+|.++.
T Consensus 174 ~i~~Lv~lL~~-----------~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 174 AVPLFIQLLYT-----------GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSN 241 (530)
T ss_dssp CHHHHHHHHHH-----------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcC-----------CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHH
Confidence 46678888873 344566668888999887654321 1347778888876 667888999999998
Q ss_pred ccCCC-CCc-ccchHHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhHH-HHHHHHHHHhhccCCCccchhhH
Q 006008 80 YSSVG-VKI-PRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI-TRLFSYLLELAECDLNYDVRDRA 155 (665)
Q Consensus 80 Y~~~~-e~i-p~iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~-~~L~qyVL~LAkyD~nyDVRDRA 155 (665)
.+... +.. ..+...++..+++-..++...|+...+.+...+-...+......+ ..++..++.+.+ +.++++|-.|
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~-~~~~~v~~~a 319 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS-HESTLVQTPA 319 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHH
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC-CCChhhHHHH
Confidence 87422 111 011223344444455667788888777777666433221000000 023455555555 3466777665
No 45
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=58.66 E-value=6.6 Score=43.94 Aligned_cols=115 Identities=14% Similarity=0.096 Sum_probs=73.1
Q ss_pred ceeeehHHHHHHHHhhCCCc----hHHHHHHHHhhcCCCCcccchhheeeeeccccC-CCCCcccchHHHHHHHHhhhcC
Q 006008 30 DVLIQSIISIKSIIKQDPSC----HEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSS-VGVKIPRMLTTVLKYLAWCFKS 104 (665)
Q Consensus 30 ~VV~EsVvVIk~LLqk~P~~----~~~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~-~~e~ip~iaPdvLR~laksF~~ 104 (665)
.+..+++..|..|++..+.. ...++..|.+.+..-..+.-|.+.+|.+|..+. .++.+....+.++..+.+.+.+
T Consensus 623 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (876)
T 1qgr_A 623 GVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGN 702 (876)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC
T ss_pred CccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCC
Confidence 34445777788888754332 355666777777655567889999999988763 1223334567888888888876
Q ss_pred --ChHHHHHHHHHhhhheeeeccCCChhHHHHHHHHHHHhhc
Q 006008 105 --EAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAE 144 (665)
Q Consensus 105 --E~~eVKLQILtlaaKl~l~~p~e~~~~~~~L~qyVL~LAk 144 (665)
....+|..++.+...+....+..-...+..++..+++..+
T Consensus 703 ~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~ 744 (876)
T 1qgr_A 703 ENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQ 744 (876)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHT
T ss_pred ccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHh
Confidence 3567998888877666543333222234556666665543
No 46
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=58.35 E-value=11 Score=42.09 Aligned_cols=106 Identities=9% Similarity=0.026 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCchHHHHHHHHhhcCCCCcccchhheeeeeccccCC
Q 006008 4 TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSV 83 (665)
Q Consensus 4 ~Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~~~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~ 83 (665)
.|++.|..+|.+ .+..+-.-++..|..|.+.+|.-.......+..++.. .++.-|.--+++++..++.
T Consensus 313 ~a~~~L~~~L~~-----------~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d-~d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 313 LAINILGRFLLN-----------NDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKD-LDVSIKRRAMELSFALVNG 380 (618)
T ss_dssp HHHHHHHHHHTC-----------SSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGS-SCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHhC-----------CCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccC-CChhHHHHHHHHHHHHccc
Confidence 578888888763 3333322366778888888886444444455555542 3456777888888888753
Q ss_pred CCCcccchHHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccC
Q 006008 84 GVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKG 126 (665)
Q Consensus 84 ~e~ip~iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~ 126 (665)
..+ ..+++.+.+-+.+.+.++|..++.+..++-.+.+.
T Consensus 381 -~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~ 418 (618)
T 1w63_A 381 -NNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAP 418 (618)
T ss_dssp -SST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCC
T ss_pred -ccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCc
Confidence 223 34555555555667899999999999988877654
No 47
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=57.70 E-value=3.3 Score=44.31 Aligned_cols=127 Identities=10% Similarity=0.100 Sum_probs=74.6
Q ss_pred cceeeehHHHHHHHHhhCCCchH-----HHHHHHHhhcCCCCcccchhheeeeeccccCCCCCccc--chHHHHHHHHhh
Q 006008 29 ADVLIQSIISIKSIIKQDPSCHE-----KVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPR--MLTTVLKYLAWC 101 (665)
Q Consensus 29 ~~VV~EsVvVIk~LLqk~P~~~~-----~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~~e~ip~--iaPdvLR~laks 101 (665)
..|..+++-+|.+|....+.... .+|..|.+.|.. ..+..|...+|.+|..+...+.... +...++..+++-
T Consensus 145 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l 223 (530)
T 1wa5_B 145 EMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 223 (530)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHH
Confidence 34556677788888775543222 235667776654 4678899999999998742110000 011223344444
Q ss_pred hcCChHHHHHHHHHhhhheeeec-cCCChhHHHHHHHHHHHhhccCCCccchhhHHH
Q 006008 102 FKSEAVETKLQILNTTIKVLLCA-KGGDMWTITRLFSYLLELAECDLNYDVRDRARF 157 (665)
Q Consensus 102 F~~E~~eVKLQILtlaaKl~l~~-p~e~~~~~~~L~qyVL~LAkyD~nyDVRDRARf 157 (665)
+.+....|+...+.+...+.... +.........++..++.+.+. .++++|..|-.
T Consensus 224 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~ 279 (530)
T 1wa5_B 224 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS-MDTETLVDACW 279 (530)
T ss_dssp GGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC-CCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC-CCHHHHHHHHH
Confidence 55577888888888877776554 433333344556666666653 36777755543
No 48
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=57.22 E-value=8.1 Score=43.34 Aligned_cols=130 Identities=14% Similarity=0.151 Sum_probs=72.9
Q ss_pred CCCcceeeehHHHHHHHHhhCCCchHHHHHH----HHhhcCC--C----------CcccchhheeeeeccccCCCC-Ccc
Q 006008 26 NGEADVLIQSIISIKSIIKQDPSCHEKVIIQ----LFRSLDS--I----------KVPEARVMIIWMVGEYSSVGV-KIP 88 (665)
Q Consensus 26 ~~~~~VV~EsVvVIk~LLqk~P~~~~~iI~~----Lak~ld~--i----------~~P~ARAsIIWLIGEY~~~~e-~ip 88 (665)
+.+..|+.-++.+|..|.+.+|..+...+.. |.+++.. . ..|=++..||=+++.|+...+ ...
T Consensus 198 d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~ 277 (621)
T 2vgl_A 198 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVR 277 (621)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHH
T ss_pred CCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHH
Confidence 4556677778888999999888755444443 4343322 1 145677777777888874211 000
Q ss_pred cchHHHHHHHH----------------------------------------------hhhc-CChHHHHHHHHHhhhhee
Q 006008 89 RMLTTVLKYLA----------------------------------------------WCFK-SEAVETKLQILNTTIKVL 121 (665)
Q Consensus 89 ~iaPdvLR~la----------------------------------------------ksF~-~E~~eVKLQILtlaaKl~ 121 (665)
....++|..++ ..|. +.+..+|+..|....++.
T Consensus 278 ~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~ 357 (621)
T 2vgl_A 278 GRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLA 357 (621)
T ss_dssp HHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 00011111111 1332 345667777777666665
Q ss_pred eeccCCChhHHHHHHHHHHHhhccCCCccchhhHHH
Q 006008 122 LCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARF 157 (665)
Q Consensus 122 l~~p~e~~~~~~~L~qyVL~LAkyD~nyDVRDRARf 157 (665)
...|. ...+......++..-+||.+..||-||-=
T Consensus 358 ~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~ 391 (621)
T 2vgl_A 358 SSEFS--HEAVKTHIETVINALKTERDVSVRQRAVD 391 (621)
T ss_dssp TCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHH
T ss_pred hccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHH
Confidence 55442 12344445556666677888999988753
No 49
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=55.53 E-value=5.2 Score=36.72 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCch-----HHHHHHHHhhcCCCCcccchhheeeeecc
Q 006008 5 CVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCH-----EKVIIQLFRSLDSIKVPEARVMIIWMVGE 79 (665)
Q Consensus 5 Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~-----~~iI~~Lak~ld~i~~P~ARAsIIWLIGE 79 (665)
++..|+.+|. +.+..+..+++.+|.+|....+... ...|..|.+.++. .++..|...+|.++.
T Consensus 97 ~i~~L~~lL~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 97 ALPALVQLLS-----------SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSN 164 (210)
T ss_dssp CHHHHHHHTT-----------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHc-----------CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 4567778876 3445567778889999988666542 2357788888875 367889999999998
Q ss_pred ccCCCCCcc--cchHHHHHHHHhhhcCChHHHHHHHHHhhhh
Q 006008 80 YSSVGVKIP--RMLTTVLKYLAWCFKSEAVETKLQILNTTIK 119 (665)
Q Consensus 80 Y~~~~e~ip--~iaPdvLR~laksF~~E~~eVKLQILtlaaK 119 (665)
.+...+..- -+...++..+++-..++...||.+.+.+..+
T Consensus 165 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~ 206 (210)
T 4db6_A 165 IASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 206 (210)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 874211000 0011233444444455666666665555443
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=55.01 E-value=18 Score=40.39 Aligned_cols=128 Identities=10% Similarity=0.042 Sum_probs=77.0
Q ss_pred cceeeehHHHHHHHHhh-CCC-chHHHHHHHHhhcCCCCcccchhheeeeeccccCC-CCC---cccchHHHHHHHHhhh
Q 006008 29 ADVLIQSIISIKSIIKQ-DPS-CHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSV-GVK---IPRMLTTVLKYLAWCF 102 (665)
Q Consensus 29 ~~VV~EsVvVIk~LLqk-~P~-~~~~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~-~e~---ip~iaPdvLR~laksF 102 (665)
..+-..+..+|..|.+. +|. ....++..|...+..-+++..|-..+=+++..+.. .+. +....+.++..+...+
T Consensus 109 ~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l 188 (861)
T 2bpt_A 109 PRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGA 188 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhh
Confidence 33444456667777776 474 67888999999887643566665555444444321 111 2345778888888888
Q ss_pred cCC--hHHHHHHHHHhhhhe--eeeccCCChhHHHHHHHHHHHhhccCCCccchhhHHH
Q 006008 103 KSE--AVETKLQILNTTIKV--LLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARF 157 (665)
Q Consensus 103 ~~E--~~eVKLQILtlaaKl--~l~~p~e~~~~~~~L~qyVL~LAkyD~nyDVRDRARf 157 (665)
.++ ...||...+.+...+ |+...-........+++.+..+. .|.++++|.-|.-
T Consensus 189 ~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~~r~~a~~ 246 (861)
T 2bpt_A 189 QSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT-QAEDIEVQAAAFG 246 (861)
T ss_dssp STTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHH-TCSCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHh-cCCCHHHHHHHHH
Confidence 887 789999999887765 23211010001123555555443 4557888876643
No 51
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=53.88 E-value=4.3 Score=46.74 Aligned_cols=126 Identities=13% Similarity=0.054 Sum_probs=69.7
Q ss_pred hHHHHHHHHhhCCCchHHHHHHHHhhcCCCC--cccchhheeeeeccccCCCCCcccchHHHHHHHHhhhcCChHHHHHH
Q 006008 35 SIISIKSIIKQDPSCHEKVIIQLFRSLDSIK--VPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQ 112 (665)
Q Consensus 35 sVvVIk~LLqk~P~~~~~iI~~Lak~ld~i~--~P~ARAsIIWLIGEY~~~~e~ip~iaPdvLR~laksF~~E~~eVKLQ 112 (665)
++-.|..|...-+......+.++...+-.+. .|.-|..++|.+|.|+......+...+.++.++...+.+ ..|+..
T Consensus 469 al~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~ 546 (963)
T 2x19_B 469 LLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVS 546 (963)
T ss_dssp HHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHH
T ss_pred HHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHH
Confidence 3334555554433222223334444443333 577899999999999852111245677788888877755 567765
Q ss_pred HHHhhhheeeeccCCChhHHHHHHHHHHHhhccCCCccchhhHHHHHHhhc
Q 006008 113 ILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFS 163 (665)
Q Consensus 113 ILtlaaKl~l~~p~e~~~~~~~L~qyVL~LAkyD~nyDVRDRARfy~rLLs 163 (665)
...+..++.-..+..-..-+..+++.++.+.... +++-++|..+|..+-.
T Consensus 547 A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~-~~~~~~~~~~~eai~~ 596 (963)
T 2x19_B 547 SVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ-IHKTSQCMWLMQALGF 596 (963)
T ss_dssp HHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccC-CCChHHHHHHHHHHHH
Confidence 5554444432111111112455666666654432 3566888888877664
No 52
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=50.78 E-value=21 Score=39.95 Aligned_cols=134 Identities=7% Similarity=0.011 Sum_probs=77.9
Q ss_pred cceeeehHHHHHHHHhhCC-C---c-hHHHHHHHHhhcCCCC-cccchhheeeeeccccCC-CCCcc--cchHHHHHHHH
Q 006008 29 ADVLIQSIISIKSIIKQDP-S---C-HEKVIIQLFRSLDSIK-VPEARVMIIWMVGEYSSV-GVKIP--RMLTTVLKYLA 99 (665)
Q Consensus 29 ~~VV~EsVvVIk~LLqk~P-~---~-~~~iI~~Lak~ld~i~-~P~ARAsIIWLIGEY~~~-~e~ip--~iaPdvLR~la 99 (665)
..+...++.++..|+.... + . ...++..|.+.+..-. .+..|...++.++..... +..+. .....++..+.
T Consensus 144 ~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~ 223 (876)
T 1qgr_A 144 EHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344447777888887653 1 1 2344555555554332 456677788877764421 00111 01123555555
Q ss_pred hhhcCChHHHHHHHHHhhhheeeeccCCChhHHH-HHHHHHHHhhccCCCccchhhHHHHHHhhc
Q 006008 100 WCFKSEAVETKLQILNTTIKVLLCAKGGDMWTIT-RLFSYLLELAECDLNYDVRDRARFFKKLFS 163 (665)
Q Consensus 100 ksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~~-~L~qyVL~LAkyD~nyDVRDRARfy~rLLs 163 (665)
....++...||.+.+.+..++.-..+..-...+. .++.+++...+ |.+.++|-.|.-+|.-+.
T Consensus 224 ~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~al~~l~~l~ 287 (876)
T 1qgr_A 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVC 287 (876)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHH
Confidence 5556778889988887777766555432222344 67777777654 447889988877776553
No 53
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=50.08 E-value=19 Score=37.06 Aligned_cols=125 Identities=12% Similarity=0.014 Sum_probs=71.9
Q ss_pred eehHHHHHHHHhhCCCc-hHHHHHHHHhhcCCCCcccchhheeeeeccccCCCCCcccchHHHHHHHHhhhcCChHHHHH
Q 006008 33 IQSIISIKSIIKQDPSC-HEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKL 111 (665)
Q Consensus 33 ~EsVvVIk~LLqk~P~~-~~~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~~e~ip~iaPdvLR~laksF~~E~~eVKL 111 (665)
-|+.-++..| .|.. +.+++..|.+++ .=+++.-|++=+=++-+-++..+ =+.+.-++++.+..=...|+..++=
T Consensus 133 ~eaae~Lgkl---kv~~~~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~-D~~i~~~I~~eI~elL~~eD~~l~e 207 (265)
T 3b2a_A 133 IETIDVLSKL---QPLEDSKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSA-DSGHLTLILDEIPSLLQNDNEFIVE 207 (265)
T ss_dssp HHHHHHHHHC---CBSCCCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCS-SCCCGGGTTTTHHHHHTCSCHHHHH
T ss_pred HHHHHHhCcC---CcccchHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccC-CHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 3344444444 2222 455666666666 44556666655555444432111 1233444455444344555666665
Q ss_pred HHHHhhhheeeec-cCCChhHHHHHHHHHHHhh-ccCCCccchhhHHHHHHhhc
Q 006008 112 QILNTTIKVLLCA-KGGDMWTITRLFSYLLELA-ECDLNYDVRDRARFFKKLFS 163 (665)
Q Consensus 112 QILtlaaKl~l~~-p~e~~~~~~~L~qyVL~LA-kyD~nyDVRDRARfy~rLLs 163 (665)
-.|.+.-+++-+. +.+-...+.++..-|=++| .|- .|-+|||||..-.+|-
T Consensus 208 ~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~-~~~~~~ka~~v~~~le 260 (265)
T 3b2a_A 208 LALDVLEKALSFPLLENVKIELLKISRIVDGLVYREG-APIIRLKAKKVSDLID 260 (265)
T ss_dssp HHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHH
Confidence 5566655554333 2344446788889999999 665 7999999999887774
No 54
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=49.42 E-value=21 Score=34.03 Aligned_cols=94 Identities=11% Similarity=0.073 Sum_probs=62.7
Q ss_pred CCCcceeeehHHHHHHHHhhCCCchHHHHHHHHhhcCCCCcccchhheeeeeccccC-CCC--CcccchHHHHHHHHhhh
Q 006008 26 NGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSS-VGV--KIPRMLTTVLKYLAWCF 102 (665)
Q Consensus 26 ~~~~~VV~EsVvVIk~LLqk~P~~~~~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~-~~e--~ip~iaPdvLR~laksF 102 (665)
+....|-..+...++.++...+ +..++..|...++. +.|..|..++-++|.... .+. ......+.++..+.+..
T Consensus 109 d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l 185 (242)
T 2qk2_A 109 EKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSN-KNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTL 185 (242)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHh
Confidence 3434344447777888887654 56788888888875 478888888877777432 111 12234566677777777
Q ss_pred cCChHHHHHHHHHhhhheee
Q 006008 103 KSEAVETKLQILNTTIKVLL 122 (665)
Q Consensus 103 ~~E~~eVKLQILtlaaKl~l 122 (665)
.+...+||-....+...++.
T Consensus 186 ~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 186 NEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp TSSCHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHH
Confidence 88888999887777666553
No 55
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=45.83 E-value=11 Score=32.68 Aligned_cols=59 Identities=8% Similarity=-0.010 Sum_probs=39.1
Q ss_pred HHHHHHHhhcCCCCcccchhheeeeeccccCCCCCcccchHHHHHHHHhhhcCChHHHHHHHHHhhhhe
Q 006008 52 KVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV 120 (665)
Q Consensus 52 ~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~~e~ip~iaPdvLR~laksF~~E~~eVKLQILtlaaKl 120 (665)
..+..|.+.++. .++.-|...+|-+|.... +...| .+.+-..++...||.....+..++
T Consensus 73 ~a~~~L~~~L~d-~~~~VR~~A~~aL~~~~~-----~~a~~----~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 RAVEPLIKLLED-DSGFVRSGAARSLEQIGG-----ERVRA----AMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHHHHH-CCTHHHHHHHHHHHHHCS-----HHHHH----HHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc-----HHHHH----HHHHHHhCCCHHHHHHHHHHHHhC
Confidence 445666666642 467889999999999752 23333 333444578889998888776553
No 56
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=45.15 E-value=9 Score=39.20 Aligned_cols=135 Identities=13% Similarity=0.093 Sum_probs=77.8
Q ss_pred CCcceeeehHHHHHHHHhhCCCchH-----HHHHHHHhhcCCCCcccchhheeeeeccccCCCCCcc-cc-hHHHHHHHH
Q 006008 27 GEADVLIQSIISIKSIIKQDPSCHE-----KVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIP-RM-LTTVLKYLA 99 (665)
Q Consensus 27 ~~~~VV~EsVvVIk~LLqk~P~~~~-----~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~~e~ip-~i-aPdvLR~la 99 (665)
.+..|...|+-+|.+|.+-+|.... ..|..|.++|..-..+..|...+|-++-.+....... .+ ....+..++
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~ 173 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLM 173 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHH
Confidence 3455667799999999998886433 3467888888754457889999999988763111000 00 011233344
Q ss_pred hhhcCChHHHHHHHHHhhhheeeeccCCChhHHH--HHHHHHHHhhccCCCccchhhHHH-HHHhhc
Q 006008 100 WCFKSEAVETKLQILNTTIKVLLCAKGGDMWTIT--RLFSYLLELAECDLNYDVRDRARF-FKKLFS 163 (665)
Q Consensus 100 ksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~~--~L~qyVL~LAkyD~nyDVRDRARf-y~rLLs 163 (665)
+-..+.+..||.....+...+....+.. ...+. -.+..+..|-+.. +++||..|-. ++.|+.
T Consensus 174 ~lL~~~d~~v~~~A~~aLs~L~~~~~~~-~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 174 RAMQQQVQKLKVKSAFLLQNLLVGHPEH-KGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhCChHH-HHHHHHcCCHHHHHHHHcCC-ChhHHHHHHHHHHHHHh
Confidence 4445567788887777776665443321 01111 1344445554433 5677776543 555554
No 57
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=44.32 E-value=13 Score=37.96 Aligned_cols=107 Identities=11% Similarity=0.182 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCchH-----HHHHHHHhhcCCCCcccchhheeeeec
Q 006008 4 TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHE-----KVIIQLFRSLDSIKVPEARVMIIWMVG 78 (665)
Q Consensus 4 ~Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~~-----~iI~~Lak~ld~i~~P~ARAsIIWLIG 78 (665)
-++..|+.||+. +.+..|...++-.|.+|.+.+|.... ..|..|.++|.. .++..|.-..|.++
T Consensus 124 g~l~~Ll~LL~~----------~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~-~d~~v~~~A~~aLs 192 (296)
T 1xqr_A 124 GALRKLLRLLDR----------DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-QVQKLKVKSAFLLQ 192 (296)
T ss_dssp THHHHHHHHHHH----------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcc----------CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 367788999974 12345677799999999998765322 356778888765 47788889999998
Q ss_pred cccCCC-CCccc-chHHHHHHHHhhhcCChHHHHHHHHHhhhhee
Q 006008 79 EYSSVG-VKIPR-MLTTVLKYLAWCFKSEAVETKLQILNTTIKVL 121 (665)
Q Consensus 79 EY~~~~-e~ip~-iaPdvLR~laksF~~E~~eVKLQILtlaaKl~ 121 (665)
..+... +.+.. +-..+++.+++-....+..||-+.|.+...+.
T Consensus 193 ~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 193 NLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 765311 11111 11123444444445566677777776665553
No 58
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=43.92 E-value=9.4 Score=43.80 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCchHHHHHHHHhhcCCCCc-ccchhheeeeeccccC
Q 006008 4 TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKV-PEARVMIIWMVGEYSS 82 (665)
Q Consensus 4 ~Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~~~iI~~Lak~ld~i~~-P~ARAsIIWLIGEY~~ 82 (665)
.+++.++..|. +.++.|.+=|.-.+.-+. .|.....++..|..+|..+++ ..+.++|.=|++.-|.
T Consensus 299 ~Vv~aVL~GL~-----------D~DDDVRAVAAetLiPIA--~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s 365 (800)
T 3oc3_A 299 GLCRKLVSLLS-----------SPDEDIKLLSAELLCHFP--ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYR 365 (800)
T ss_dssp HHHHHHHHHTT-----------CSSHHHHHHHHHHHTTSC--CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC-----------CcccHHHHHHHHHhhhhc--chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHc
Confidence 44555555555 344445444444455555 677788888888888776653 4566676666665442
Q ss_pred CCCCcccchHHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhHHHHHHHHHHHhhccCCCccchhhHHHHHH
Q 006008 83 VGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKK 160 (665)
Q Consensus 83 ~~e~ip~iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~~~L~qyVL~LAkyD~nyDVRDRARfy~r 160 (665)
... ....-|.++-.+-.=|..--..||+++|++...+. ....+..++|.+| .+.|.|||+=+.-.|+
T Consensus 366 ~p~-~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL------~~~~LRLIFQNIL----LE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 366 ENP-ELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS------EESIDFLVAEVVL----IEEKDEIREMAIKLLK 432 (800)
T ss_dssp HCT-TCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC------CHHHHHHHHHHHH----HCSCHHHHHHHHHHHH
T ss_pred CCc-ccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH------hhhHHHHHHHHHH----hCCcHHHHHHHHHHHH
Confidence 110 00011122222334556668899999999998887 2235666666665 5678999999999996
No 59
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=39.56 E-value=12 Score=41.26 Aligned_cols=112 Identities=13% Similarity=0.128 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCc-----hHHHHHHHHhhcCCCCcccchhheeee
Q 006008 2 ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSC-----HEKVIIQLFRSLDSIKVPEARVMIIWM 76 (665)
Q Consensus 2 a~~Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~-----~~~iI~~Lak~ld~i~~P~ARAsIIWL 76 (665)
+..|+..|+.||.. .+..|...++..|.+|-...+.+ +..+|..|.+.|..-..++.|...++.
T Consensus 12 ~~g~i~~Lv~lL~~-----------~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~ 80 (644)
T 2z6h_A 12 ATRAIPELTKLLND-----------EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGT 80 (644)
T ss_dssp CTTTHHHHHHHHTC-----------SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred hhchHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHH
Confidence 45578899999973 44555666888999998776643 236788888888765567777666666
Q ss_pred eccccCCCCCccc-chHHHHHHHHhhhcCChHHHHHHHHHhhhheeeec
Q 006008 77 VGEYSSVGVKIPR-MLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCA 124 (665)
Q Consensus 77 IGEY~~~~e~ip~-iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~ 124 (665)
+...+...+.... +...++..+++-..+....||.+.+.+..++....
T Consensus 81 L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~ 129 (644)
T 2z6h_A 81 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 129 (644)
T ss_dssp HHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Confidence 6654421010000 01123444444455677899999998888886654
No 60
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=38.41 E-value=6.8 Score=45.33 Aligned_cols=94 Identities=9% Similarity=-0.042 Sum_probs=54.3
Q ss_pred cccchhheeeeeccccCCCCCcccchHHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhHHHHHHHHHHHhhcc
Q 006008 66 VPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAEC 145 (665)
Q Consensus 66 ~P~ARAsIIWLIGEY~~~~e~ip~iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~~~L~qyVL~LAky 145 (665)
.|.-|+..+|.+|.|+......+...+.+|..+...+ + ..|+...-.+..++.-.....-..-+..|++.++++...
T Consensus 519 ~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~ 595 (971)
T 2x1g_F 519 NVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNT 595 (971)
T ss_dssp CHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcC
Confidence 6778999999999998632223567888888888777 3 455544443333332111110001234455555555442
Q ss_pred CCCccchhhHHHHHHhhc
Q 006008 146 DLNYDVRDRARFFKKLFS 163 (665)
Q Consensus 146 D~nyDVRDRARfy~rLLs 163 (665)
. +++..+|.++|..+..
T Consensus 596 ~-~~~~~~~~~~~~ai~~ 612 (971)
T 2x1g_F 596 G-RMKNSDSVRLMFSIGK 612 (971)
T ss_dssp T-TSCHHHHHHHHHHHHH
T ss_pred C-CCChHHHHHHHHHHHH
Confidence 2 4678889999888765
No 61
>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis}
Probab=32.00 E-value=87 Score=29.41 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=38.4
Q ss_pred CCeEEEEEEEEecCCcceeeeEeeccccccchhhhhhhhhhcccccccCCCCCCcccCCCc--cccCCCCeeEEEEEEec
Q 006008 411 PQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEI--TSLEPGQTMKRILEVRF 488 (665)
Q Consensus 411 ~~mv~Vql~f~N~s~~~i~~I~i~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~i~~f~eI--~sL~Pg~s~t~~lgIdF 488 (665)
...+.|+++++|.+++++. +..-+= ++.++-..+... ..-.....+.+ ..|.||.++++.+-.+=
T Consensus 46 ~~fviV~VTIeN~g~e~~~-~s~~~F---~L~d~dG~~~~~---------~~~~~~~~~~l~~g~L~pG~kvtG~ivFeV 112 (159)
T 3cfu_A 46 EERLIIEVTMENIGEDSIS-YNFIGF---DLRDKNDQSVRP---------VFSIEEKGRILMGGTLVSGKKVTGVLSYVI 112 (159)
T ss_dssp SEEEEEEEEEEECSSSCEE-EEGGGE---EEECTTCCBCCC---------EECSTTTTTBCCEEEECTTCEEEEEEEEEE
T ss_pred CEEEEEEEEEEECCCCcee-eCcccE---EEEeCCCCEEec---------eeeecccCCcccccccCCCCEEEEEEEEEE
Confidence 3799999999999998874 221111 221111100000 00001112234 48999999999988776
Q ss_pred CCCC
Q 006008 489 HHHL 492 (665)
Q Consensus 489 ~dst 492 (665)
-...
T Consensus 113 P~~~ 116 (159)
T 3cfu_A 113 PKGE 116 (159)
T ss_dssp STTC
T ss_pred CCCC
Confidence 5554
No 62
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=29.78 E-value=53 Score=37.85 Aligned_cols=60 Identities=18% Similarity=0.312 Sum_probs=41.4
Q ss_pred CeEEEEEEEEecCCcc---eeeeEeeccccccchhhhhhhhhhcccccccCCCCCCcccCCCccccCCCCeeEEEEEEec
Q 006008 412 QLVCLETFFENCSSET---MSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRF 488 (665)
Q Consensus 412 ~mv~Vql~f~N~s~~~---i~~I~i~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~i~~f~eI~sL~Pg~s~t~~lgIdF 488 (665)
.-+.|.++++|+++.. +--+-+..... +.. .-.-.+..|..|..|+||++.++.+-|+-
T Consensus 615 ~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~-----~~~-------------~P~k~L~gF~kv~~L~pGes~~V~~~l~~ 676 (721)
T 2x41_A 615 ETLRVQYRIENTGGRAGKEVSQVYIKAPKG-----KID-------------KPFQELKAFHKTRLLNPGESEEVVLEIPV 676 (721)
T ss_dssp SEEEEEEEEEECSSSCBCCEEEEEEECCCS-----SSC-------------CCSCEEEEEEECCCBCTTCEEEEEEEEEG
T ss_pred CeEEEEEEEEECCCCCCcEEeeEEEccCCC-----CCC-------------CchHHhhcccccccCCCCCeEEEEEEECH
Confidence 4578999999998754 44445544311 111 11225788999988999999999999985
Q ss_pred C
Q 006008 489 H 489 (665)
Q Consensus 489 ~ 489 (665)
.
T Consensus 677 ~ 677 (721)
T 2x41_A 677 R 677 (721)
T ss_dssp G
T ss_pred H
Confidence 4
No 63
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=29.74 E-value=66 Score=31.48 Aligned_cols=119 Identities=14% Similarity=0.137 Sum_probs=67.2
Q ss_pred ceeeehHHHHHHHHhhCCCc---h-------HHHHHHHHh-hcCCCC---cccchhheeeeeccccCCCCCcccchHHHH
Q 006008 30 DVLIQSIISIKSIIKQDPSC---H-------EKVIIQLFR-SLDSIK---VPEARVMIIWMVGEYSSVGVKIPRMLTTVL 95 (665)
Q Consensus 30 ~VV~EsVvVIk~LLqk~P~~---~-------~~iI~~Lak-~ld~i~---~P~ARAsIIWLIGEY~~~~e~ip~iaPdvL 95 (665)
.|+..++..|..++...... + ..++..|.. .+..-+ ...|..+++.++.... ....++
T Consensus 70 ~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~--------~~~~~~ 141 (278)
T 4ffb_C 70 VAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT--------SITQSV 141 (278)
T ss_dssp HHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS--------SSHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC--------cHHHHH
Confidence 34455777888888765432 1 123334442 233222 1234555665553221 134567
Q ss_pred HHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhHHHHHHHHHHHhh---ccCCCccchhhHHH
Q 006008 96 KYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELA---ECDLNYDVRDRARF 157 (665)
Q Consensus 96 R~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~~~L~qyVL~LA---kyD~nyDVRDRARf 157 (665)
+.+...+..-..-|+...|....+++-....... ..+..+..++... -.|.|++||+=|.-
T Consensus 142 e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~-~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~ 205 (278)
T 4ffb_C 142 ELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNV-NVQTFLPELLKHVPQLAGHGDRNVRSQTMN 205 (278)
T ss_dssp HHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTC-CHHHHHHHHGGGHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcC-CchhHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 7788888888999999999988887654322111 1233333333321 25679999999874
No 64
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=29.59 E-value=53 Score=28.80 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=35.4
Q ss_pred CeEEEEEEEEecCCcceeeeEeeccccccchhhhhhhhhhcccccccCCCCCCcccCCCccccCCCCeeEEEEEEe
Q 006008 412 QLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVR 487 (665)
Q Consensus 412 ~mv~Vql~f~N~s~~~i~~I~i~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~i~~f~eI~sL~Pg~s~t~~lgId 487 (665)
+=+.|++.|+|--..+++|..+-=+.+ +|..+. .+ .+..++||++++..+.+-
T Consensus 20 ~~l~v~vsf~NPL~~~L~~c~~~vEG~-GL~~~~-------------------~~---~~~~v~pg~~~~~~~~~~ 72 (102)
T 2xzz_A 20 QECEVQIVFKNPLPVTLTNVVFRLEGS-GLQRPK-------------------IL---NVGDIGGNETVTLRQSFV 72 (102)
T ss_dssp SCEEEEEEEECCSSSCBCSEEEEEEET-TTEEEE-------------------EE---EECCBCTTCEEEEEEEEC
T ss_pred CeEEEEEEEECCCCCcccCEEEEEECC-CCCcce-------------------EE---EcCcCCCCCEEEEEEEEe
Confidence 345689999999999999987653311 222221 11 346789999988876553
No 65
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=28.25 E-value=54 Score=34.19 Aligned_cols=132 Identities=5% Similarity=0.049 Sum_probs=75.5
Q ss_pred CcceeeehHHHHHHHHhhCCCc--hHHHHHHHHhhcCCCCcccchhheeeeeccccCCCC-Cc-----ccchHHHHHHHH
Q 006008 28 EADVLIQSIISIKSIIKQDPSC--HEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV-KI-----PRMLTTVLKYLA 99 (665)
Q Consensus 28 ~~~VV~EsVvVIk~LLqk~P~~--~~~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~~e-~i-----p~iaPdvLR~la 99 (665)
+..++..++-+|.+|-+..|.. ...+|..|.+++.. .+++.|...+|.++..+...+ .. ....|.+++.+.
T Consensus 240 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~ 318 (529)
T 1jdh_A 240 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 318 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHH
Confidence 3456677888888888765442 45778889998854 578889999999998864211 00 123444444442
Q ss_pred hhhcCChHHHHHHHHHhhhheeeeccCCCh--hHH--HHHHHHHHHhhccCCCccchhhHH-HHHHhh
Q 006008 100 WCFKSEAVETKLQILNTTIKVLLCAKGGDM--WTI--TRLFSYLLELAECDLNYDVRDRAR-FFKKLF 162 (665)
Q Consensus 100 ksF~~E~~eVKLQILtlaaKl~l~~p~e~~--~~~--~~L~qyVL~LAkyD~nyDVRDRAR-fy~rLL 162 (665)
. . ++...|+...+.+...+....+.... ..+ ...+..++.+.+.+.+.++|--|- .++.|.
T Consensus 319 ~-~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~ 384 (529)
T 1jdh_A 319 R-A-GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 384 (529)
T ss_dssp H-H-TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred c-c-CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHh
Confidence 1 1 23367888888888777544332100 000 012445555555443446666553 344443
No 66
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=25.02 E-value=1.3e+02 Score=32.28 Aligned_cols=106 Identities=11% Similarity=0.140 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCchHH-----HHHHHHhhcCCCCcc----cchhheee
Q 006008 5 CVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEK-----VIIQLFRSLDSIKVP----EARVMIIW 75 (665)
Q Consensus 5 Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~~~-----iI~~Lak~ld~i~~P----~ARAsIIW 75 (665)
++..|+.||+. .+..|..+++-.|.+|-...|..-.. .+..|..++..-+.. .++..+.|
T Consensus 144 aIp~Lv~lL~s-----------~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 144 AIPAFISLLAS-----------PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHHHHHTTC-----------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred CHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence 56778888873 44556777899999998766653222 255677777654322 34556788
Q ss_pred eeccccCCCCCccc--chHHHHHHHHhhhcCChHHHHHHHHHhhhhee
Q 006008 76 MVGEYSSVGVKIPR--MLTTVLKYLAWCFKSEAVETKLQILNTTIKVL 121 (665)
Q Consensus 76 LIGEY~~~~e~ip~--iaPdvLR~laksF~~E~~eVKLQILtlaaKl~ 121 (665)
.+...+......+. ....++..+++-..++..+|+...+.+...+-
T Consensus 213 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 88777642222222 22445666666667888888888777776654
No 67
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=24.90 E-value=47 Score=32.65 Aligned_cols=107 Identities=11% Similarity=0.122 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhC-CC----chHHHHHHHHhhcCCCCcccchhheeeeec
Q 006008 4 TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQD-PS----CHEKVIIQLFRSLDSIKVPEARVMIIWMVG 78 (665)
Q Consensus 4 ~Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~-P~----~~~~iI~~Lak~ld~i~~P~ARAsIIWLIG 78 (665)
.++-.|++.+. +....|+..+...+..|+..- |. ....++.+|...+++= .|..|...+..++
T Consensus 104 ~llp~ll~~l~-----------dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~ 171 (249)
T 2qk1_A 104 LVFTPLLDRTK-----------EKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFN 171 (249)
T ss_dssp HHHHHHHHGGG-----------CCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence 45556666665 333334444556688888754 32 2347788888887654 6889998888888
Q ss_pred cccCCCCC----cccch-HHHHHHHHhhhcCChHHHHHHHHHhhhheee
Q 006008 79 EYSSVGVK----IPRML-TTVLKYLAWCFKSEAVETKLQILNTTIKVLL 122 (665)
Q Consensus 79 EY~~~~e~----ip~ia-PdvLR~laksF~~E~~eVKLQILtlaaKl~l 122 (665)
.+...... +.... |.++..+.+.+.+...+||-+-..+.++++-
T Consensus 172 ~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 172 ASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 87642221 11123 4555566667788899999888777777763
No 68
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=24.86 E-value=16 Score=38.18 Aligned_cols=140 Identities=12% Similarity=0.121 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCc-----hHHHHHHHHhhcCCCCcccchhheeee
Q 006008 2 ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSC-----HEKVIIQLFRSLDSIKVPEARVMIIWM 76 (665)
Q Consensus 2 a~~Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~-----~~~iI~~Lak~ld~i~~P~ARAsIIWL 76 (665)
+..|+..|+.||.. .+..+...++..|.+|-...+.+ ...+|..|.+.+..-.++..|...+|.
T Consensus 15 ~~~~i~~Lv~lL~~-----------~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~ 83 (529)
T 1jdh_A 15 ATRAIPELTKLLND-----------EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGT 83 (529)
T ss_dssp --CHHHHHHHHHTC-----------SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred hHhhHHHHHHHhCC-----------CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHH
Confidence 45688899999973 44556666888899988655432 235677888887655567777777777
Q ss_pred eccccCCCCCccc-chHHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhHH--HHHHHHHHHhhccCCCccchh
Q 006008 77 VGEYSSVGVKIPR-MLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI--TRLFSYLLELAECDLNYDVRD 153 (665)
Q Consensus 77 IGEY~~~~e~ip~-iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~--~~L~qyVL~LAkyD~nyDVRD 153 (665)
++..+...+.... +...++..+++-..+....||.+.+.+..++....+.. ...+ ...+..++++.+. .++++|-
T Consensus 84 L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~ll~~-~~~~~~~ 161 (529)
T 1jdh_A 84 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-KMAVRLAGGLQKMVALLNK-TNVKFLA 161 (529)
T ss_dssp HHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH-HHHHHHHTHHHHHHHGGGC-CCHHHHH
T ss_pred HHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcch-HHHHHHcCCHHHHHHHHhc-CCHHHHH
Confidence 7665431110000 01123444555556677889999988888876654321 1111 1234455555543 2455544
Q ss_pred h
Q 006008 154 R 154 (665)
Q Consensus 154 R 154 (665)
-
T Consensus 162 ~ 162 (529)
T 1jdh_A 162 I 162 (529)
T ss_dssp H
T ss_pred H
Confidence 4
No 69
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=24.75 E-value=19 Score=42.51 Aligned_cols=91 Identities=16% Similarity=0.113 Sum_probs=58.2
Q ss_pred hhheeeeeccccCCCCCcccchHHHHHHHHhhhcCChHHHHHHHHHhhhheeeecc--------CCChhHHHHHHHHHHH
Q 006008 70 RVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAK--------GGDMWTITRLFSYLLE 141 (665)
Q Consensus 70 RAsIIWLIGEY~~~~e~ip~iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p--------~e~~~~~~~L~qyVL~ 141 (665)
|+.+.|++|.|+..-...|...+.+|.++...+.+....||...-.+..++.-..+ .+...-+..+++.+..
T Consensus 517 ~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~ 596 (1049)
T 3m1i_C 517 ASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQK 596 (1049)
T ss_dssp HHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 33588999999852122467888999999988888788888766655555432221 1100134556666555
Q ss_pred hhccCCCccchhhHHHHHHhhc
Q 006008 142 LAECDLNYDVRDRARFFKKLFS 163 (665)
Q Consensus 142 LAkyD~nyDVRDRARfy~rLLs 163 (665)
+.. .++..++.++|..+..
T Consensus 597 ~~~---~~~~~~~~~~~eai~~ 615 (1049)
T 3m1i_C 597 TTA---DLQPQQVHTFYKACGI 615 (1049)
T ss_dssp HHT---TSCHHHHHHHHHHHHH
T ss_pred HHH---hCCHHHHHHHHHHHHH
Confidence 543 3677788888877553
No 70
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=24.34 E-value=21 Score=42.70 Aligned_cols=151 Identities=16% Similarity=0.061 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhhccccccccCCCCCcceeee-hHHHHHHHHhhCC-CchH----HHHHHHHhhcCC--CCcccch--hhe
Q 006008 4 TCVEGLLALIRQELLTSDIESGNGEADVLIQ-SIISIKSIIKQDP-SCHE----KVIIQLFRSLDS--IKVPEAR--VMI 73 (665)
Q Consensus 4 ~Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~E-sVvVIk~LLqk~P-~~~~----~iI~~Lak~ld~--i~~P~AR--AsI 73 (665)
.|+..++..+..... . ....+-..| ++-.|+.|...-. +... .++..|..+.+. .+++.++ ..+
T Consensus 447 ~~~~~~~~~l~~~l~-----~-~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~ 520 (1023)
T 4hat_C 447 DTEEIMISKLARQID-----G-SEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDI 520 (1023)
T ss_dssp HHHHHHHHHHHHHHS-----S-TTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-----C-CCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHH
Confidence 456666666643210 0 012334445 3444666664221 1122 334444444432 2235444 467
Q ss_pred eeeeccccCCCCCcccchHHHHHHHHhhhcCChHHHHHHHHHhhhheeee--------ccCCChhHHHHHHHHHHHhhcc
Q 006008 74 IWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLC--------AKGGDMWTITRLFSYLLELAEC 145 (665)
Q Consensus 74 IWLIGEY~~~~e~ip~iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~--------~p~e~~~~~~~L~qyVL~LAky 145 (665)
.|++|.|+.-....|...+.+|.++.....+..+.|+-..-.+..|+--. .+.+...-+..+++.+.....
T Consensus 521 ~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~- 599 (1023)
T 4hat_C 521 MYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTA- 599 (1023)
T ss_dssp HHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHH-
Confidence 79999998622235778999999999877776666776543333222211 111111124445554444322
Q ss_pred CCCccchhhHHHHHHhhc
Q 006008 146 DLNYDVRDRARFFKKLFS 163 (665)
Q Consensus 146 D~nyDVRDRARfy~rLLs 163 (665)
.++-+.+.++|..+-.
T Consensus 600 --~l~~~~~~~lyeai~~ 615 (1023)
T 4hat_C 600 --DLQPQQVHTFYKACGI 615 (1023)
T ss_dssp --TSCHHHHHHHHHHHHH
T ss_pred --hCCHHHHHHHHHHHHH
Confidence 4677888888887654
No 71
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=23.24 E-value=58 Score=37.28 Aligned_cols=132 Identities=5% Similarity=0.049 Sum_probs=76.8
Q ss_pred CcceeeehHHHHHHHHhhCCCc--hHHHHHHHHhhcCCCCcccchhheeeeeccccCCCCC------cccchHHHHHHHH
Q 006008 28 EADVLIQSIISIKSIIKQDPSC--HEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVK------IPRMLTTVLKYLA 99 (665)
Q Consensus 28 ~~~VV~EsVvVIk~LLqk~P~~--~~~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~~e~------ip~iaPdvLR~la 99 (665)
+..++..++-+|++|.+..+.. ...+|..|.+++.. ..+..|...+|.++..+...+. -....|.+++.+.
T Consensus 373 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~-~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 451 (780)
T 2z6g_A 373 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 451 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHH
Confidence 3456777888899998776543 56788899998874 5788999999999987642100 0123455555443
Q ss_pred hhhcCChHHHHHHHHHhhhheeeeccCCC--hhHH--HHHHHHHHHhhccCCCccchhhHH-HHHHhh
Q 006008 100 WCFKSEAVETKLQILNTTIKVLLCAKGGD--MWTI--TRLFSYLLELAECDLNYDVRDRAR-FFKKLF 162 (665)
Q Consensus 100 ksF~~E~~eVKLQILtlaaKl~l~~p~e~--~~~~--~~L~qyVL~LAkyD~nyDVRDRAR-fy~rLL 162 (665)
. ..+...||...+.+...+....+... ...+ ...+..++++.+.+..++||-.|- .++.|.
T Consensus 452 ~--~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa 517 (780)
T 2z6g_A 452 R--AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 517 (780)
T ss_dssp H--HTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHH
T ss_pred c--cCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHh
Confidence 2 12234788888877777744333210 0000 123455566665554446665553 244444
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=21.99 E-value=98 Score=37.17 Aligned_cols=140 Identities=12% Similarity=0.089 Sum_probs=89.7
Q ss_pred HHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCchHHHHHHHHhhcCCCCcccchhheeeeeccccCCCC
Q 006008 6 VEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV 85 (665)
Q Consensus 6 l~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~~~~iI~~Lak~ld~i~~P~ARAsIIWLIGEY~~~~e 85 (665)
+..||+.+.. +.++.|-+-||+.|-.|+-..|+. +.++..+|..-.+|..|-+.+|-+|.-|.. .
T Consensus 579 Iq~LL~~~~~----------d~~d~VRraAViaLGlI~~g~~e~----v~rlv~~L~~~~d~~VR~gAalALGli~aG-n 643 (963)
T 4ady_A 579 VKRLLHVAVS----------DSNDDVRRAAVIALGFVLLRDYTT----VPRIVQLLSKSHNAHVRCGTAFALGIACAG-K 643 (963)
T ss_dssp HHHHHHHHHH----------CSCHHHHHHHHHHHHHHTSSSCSS----HHHHTTTGGGCSCHHHHHHHHHHHHHHTSS-S
T ss_pred HHHHHHHhcc----------CCcHHHHHHHHHHHHhhccCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHhccC-C
Confidence 4456666653 233334334777788887777753 556666665556799999999999998632 2
Q ss_pred CcccchHHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhHHHHHHHHHHHhhc-cCCCccchhhHHHHHHhhcC
Q 006008 86 KIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAE-CDLNYDVRDRARFFKKLFSH 164 (665)
Q Consensus 86 ~ip~iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~~~L~qyVL~LAk-yD~nyDVRDRARfy~rLLs~ 164 (665)
.-+++. ++|..+ ..|....|+...+.+...+..........++..+.+.++.... .+.+++.|=-||+=..|+..
T Consensus 644 ~~~~ai-d~L~~L---~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a 719 (963)
T 4ady_A 644 GLQSAI-DVLDPL---TKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNA 719 (963)
T ss_dssp CCHHHH-HHHHHH---HTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT
T ss_pred CcHHHH-HHHHHH---ccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 223322 355544 5789999999999999998876544322245555555444332 13467788888888877754
No 73
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=21.10 E-value=21 Score=40.89 Aligned_cols=140 Identities=11% Similarity=0.121 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHhhccccccccCCCCCcceeeehHHHHHHHHhhCCCc-----hHHHHHHHHhhcCCCCcccchhheeeee
Q 006008 3 NTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSC-----HEKVIIQLFRSLDSIKVPEARVMIIWMV 77 (665)
Q Consensus 3 ~~Cl~~Ll~Ll~~~~~~~~~~~~~~~~~VV~EsVvVIk~LLqk~P~~-----~~~iI~~Lak~ld~i~~P~ARAsIIWLI 77 (665)
..++..|+.||.. .+..|...++.+|.+|-...+.+ ...+|..|++.|..-..++.|...+|.+
T Consensus 149 ~g~ip~Lv~lL~~-----------~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL 217 (780)
T 2z6g_A 149 TRAIPELTKLLND-----------EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTL 217 (780)
T ss_dssp HHHHHHHHHHHHC-----------SCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHCC-----------CCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4567788888872 44445556888888887643322 2356778888876555778888777877
Q ss_pred ccccCCCCCccc-chHHHHHHHHhhhcCChHHHHHHHHHhhhheeeeccCCChhHH--HHHHHHHHHhhccCCCccchhh
Q 006008 78 GEYSSVGVKIPR-MLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI--TRLFSYLLELAECDLNYDVRDR 154 (665)
Q Consensus 78 GEY~~~~e~ip~-iaPdvLR~laksF~~E~~eVKLQILtlaaKl~l~~p~e~~~~~--~~L~qyVL~LAkyD~nyDVRDR 154 (665)
...+...+.... +...++..+++-..+....||...+.+...+....+.. ...+ ...+..++++.+. .+.++|..
T Consensus 218 ~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~-~~~v~~~g~v~~Lv~lL~~-~~~~v~~~ 295 (780)
T 2z6g_A 218 HNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA-KMAVRLAGGLQKMVALLNK-TNVKFLAI 295 (780)
T ss_dssp HHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH-HHHHHHTTHHHHHHHGGGC-CCHHHHHH
T ss_pred HHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh-HHHHHHcCCHHHHHHHHhc-CCHHHHHH
Confidence 765421110000 01123444444445667889999888888876543321 0011 1234455555553 35566555
Q ss_pred H
Q 006008 155 A 155 (665)
Q Consensus 155 A 155 (665)
|
T Consensus 296 a 296 (780)
T 2z6g_A 296 T 296 (780)
T ss_dssp H
T ss_pred H
Confidence 4
Done!