Query 006009
Match_columns 665
No_of_seqs 406 out of 1695
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 17:02:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00466 SRA SET and RING fi 100.0 2.3E-58 4.9E-63 440.4 16.8 153 218-373 2-155 (155)
2 PF02182 SAD_SRA: SAD/SRA doma 100.0 3.3E-54 7.2E-59 413.7 13.6 151 219-373 2-155 (155)
3 KOG1082 Histone H3 (Lys9) meth 100.0 1.1E-52 2.3E-57 453.9 19.8 295 335-665 31-345 (364)
4 KOG4442 Clathrin coat binding 100.0 2.2E-39 4.8E-44 359.4 12.0 169 446-665 64-251 (729)
5 KOG1141 Predicted histone meth 100.0 3.2E-37 7E-42 342.7 7.9 151 397-548 671-838 (1262)
6 KOG1079 Transcriptional repres 99.9 3.1E-28 6.6E-33 269.6 10.1 163 446-655 538-712 (739)
7 KOG1080 Histone H3 (Lys4) meth 99.9 6.4E-25 1.4E-29 258.1 9.4 124 510-665 867-996 (1005)
8 smart00317 SET SET (Su(var)3-9 99.9 4.2E-22 9.1E-27 177.5 12.6 110 510-651 1-116 (116)
9 KOG1083 Putative transcription 99.9 7E-23 1.5E-27 234.4 3.5 130 498-654 1166-1296(1306)
10 PF05033 Pre-SET: Pre-SET moti 99.8 3E-21 6.6E-26 173.0 6.5 99 403-501 1-103 (103)
11 smart00468 PreSET N-terminal t 99.8 3E-20 6.5E-25 165.7 7.8 92 402-493 2-98 (98)
12 KOG1085 Predicted methyltransf 99.7 2E-16 4.3E-21 161.7 8.6 121 505-654 252-379 (392)
13 COG2940 Proteins containing SE 99.5 7E-15 1.5E-19 165.2 5.9 144 487-656 310-453 (480)
14 PF00856 SET: SET domain; Int 99.4 1.3E-12 2.9E-17 121.1 8.6 55 594-652 108-162 (162)
15 KOG1141 Predicted histone meth 98.9 2E-09 4.3E-14 122.6 6.4 271 392-665 868-1253(1262)
16 KOG1081 Transcription factor N 98.8 1.4E-09 3E-14 121.7 1.8 139 484-665 288-428 (463)
17 KOG2589 Histone tail methylase 98.2 9.7E-07 2.1E-11 94.1 3.2 109 518-664 136-250 (453)
18 KOG2461 Transcription factor B 97.6 4.8E-05 1E-09 84.0 4.4 112 507-654 26-145 (396)
19 smart00570 AWS associated with 96.8 0.00048 1E-08 54.9 1.0 40 448-506 4-49 (51)
20 COG3440 Predicted restriction 94.9 0.00025 5.4E-09 74.5 -10.7 141 222-370 7-149 (301)
21 KOG2084 Predicted histone tail 85.1 1.1 2.4E-05 49.6 4.9 40 607-654 208-248 (482)
22 KOG1337 N-methyltransferase [G 68.4 4.1 8.8E-05 46.4 3.2 41 607-654 239-279 (472)
23 PF03638 TCR: Tesmin/TSO1-like 52.5 8.9 0.00019 29.6 1.5 36 447-502 3-40 (42)
24 KOG1081 Transcription factor N 42.8 7.9 0.00017 44.3 -0.1 149 485-662 95-252 (463)
25 KOG1171 Metallothionein-like p 41.6 9.7 0.00021 42.7 0.4 36 445-500 215-252 (406)
26 KOG3813 Uncharacterized conser 40.9 15 0.00032 42.2 1.6 20 446-465 306-326 (640)
27 PF08666 SAF: SAF domain; Int 27.3 34 0.00074 27.3 1.3 14 635-648 4-17 (63)
28 KOG1079 Transcriptional repres 27.2 28 0.00061 41.3 1.0 38 447-503 501-540 (739)
29 PF11403 Yeast_MT: Yeast metal 25.4 45 0.00098 24.6 1.4 15 448-462 22-38 (40)
30 PF12218 End_N_terminal: N ter 23.5 33 0.00071 28.8 0.5 50 310-375 10-59 (67)
31 PRK03999 translation initiatio 21.5 1.5E+02 0.0033 28.1 4.7 40 336-375 13-54 (129)
No 1
>smart00466 SRA SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533.
Probab=100.00 E-value=2.3e-58 Score=440.44 Aligned_cols=153 Identities=60% Similarity=1.000 Sum_probs=145.3
Q ss_pred CCeeccCCCcccCceechHhhhhhhccCcCCCCCccccCCCCCCCCCCcEEEEEEcCCcCCCCCCCCeEEEEecCCCCCC
Q 006009 218 KRIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDEDAGDVLIYTGHGGQDKL 297 (665)
Q Consensus 218 ~~i~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GI~~~~~~~~~~g~~~A~SIV~SggY~dd~D~gd~liYtG~GG~~~~ 297 (665)
+++||+||||+|||+|++|+||+++|||+++|+|||+++.+ +++++|+|||+||||+||+|+||+|+|||+||++..
T Consensus 2 ~~~~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GI~~~~~~---~~~~~A~SIV~SggYedd~D~gd~liYtG~gg~~~~ 78 (155)
T smart00466 2 KHIFGPVPGVEVGDIFFFRVELCLVGLHRPTQAGIDGLTAD---EGEPGATSVVSSGGYEDDTDDGDVLIYTGQGGRDMT 78 (155)
T ss_pred CceEeCCCCccCCCEEcchhHhhhhcccCcccCCccccccc---CCCccEEEEEECCCccCcccCCCEEEEEccCCccCC
Confidence 45689999999999999999999999999999999998653 788999999999999999999999999999999988
Q ss_pred CccccCcccchhhHHHHHhhhcCceeEEEecccc-CCCCcceeeEecCeEEEEEeEeecCCCcceEEEEEEEeecCC
Q 006009 298 SRQCEHQKLEGGNLAMERSMHYGIEVRVIRGFRY-QGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQ 373 (665)
Q Consensus 298 ~~~~~dQ~l~~gNlAL~~S~~~~~pVRViRg~k~-~~~~~~~~yrYDGLY~V~~~w~e~g~~G~~v~kf~L~R~~gQ 373 (665)
++|..||+|++||+||++||++++|||||||++. ....|.++|||||||+|+++|.|+|++||.||||+|+|+|||
T Consensus 79 ~~~~~dQkl~~gNlAL~~S~~~~~PVRViRg~~~~~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~kfkL~R~~gQ 155 (155)
T smart00466 79 HGQPEDQKLERGNLALEASCRKGIPVRVVRGMKGYSKYAPGKGYIYDGLYRIVDYWREVGKSGFLVFKFKLVRIPGQ 155 (155)
T ss_pred CCCccccEecchhHHHHHHHhcCCceEEEccccccCCCCCCCeEEECcEEEEEEEEEecCCCCcEEEEEEEEeCCCC
Confidence 8999999999999999999999999999999995 344599999999999999999999999999999999999998
No 2
>PF02182 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This domain has been termed SRA-YDG, for SET and Ring finger Associated, and because of the conserved YDG motif within the domain. Further characteristics of the domain are the conservation of up to 13 evenly spaced glycine residues and a VRV(I/V)RG motif. The domain is mainly found in plants and animals and in bacteria. In animals, this domain is associated with the Np95-like ring finger protein and the related gene product Np97, which contains PHD and RING FINGER domains and which is an important determinant in cell cycle progression. Np95 is a chromatin-associated ubiquitin ligase, binding to histones is direct and shows a remarkable preference for histone H3 and its N-terminal tail. The SRA-YDG domain contained in Np95 is indispensable both for the interaction with histones and for chromatin binding in vivo [, ]. In plants the SRA-YDG domain is associated with the SET domain, found in a family of histone methyl transferases, and in bacteria it is found in association with HNH, a non-specific nuclease motif [, ].; GO: 0042393 histone binding; PDB: 2ZO1_B 2ZKD_A 2ZO0_B 2ZKF_A 2ZKG_B 3FDE_A 3F8I_A 2ZO2_B 3F8J_B 2ZKE_A ....
Probab=100.00 E-value=3.3e-54 Score=413.71 Aligned_cols=151 Identities=57% Similarity=0.971 Sum_probs=123.1
Q ss_pred CeeccCCCcccCceechHhhhhhhccCcCCCCCccccCCCCCCCCCCcEEEEEEcCCcCCCCCCCCeEEEEecCCCCCC-
Q 006009 219 RIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDEDAGDVLIYTGHGGQDKL- 297 (665)
Q Consensus 219 ~i~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GI~~~~~~~~~~g~~~A~SIV~SggY~dd~D~gd~liYtG~GG~~~~- 297 (665)
++|||||||+|||||++|+||+++|||+++|+||++++ .+|.++|+|||+||+|+||+|+||+|||||+||++..
T Consensus 2 k~~G~ipGv~vG~~f~~r~~~~~~G~H~~~~~GI~g~~----~~g~~~A~SIV~Sg~y~dd~D~gd~l~YtG~gg~~~~~ 77 (155)
T PF02182_consen 2 KRFGHIPGVEVGDWFPYRMELSIVGLHGPTQAGIDGMK----KEGGPVAYSIVLSGGYEDDEDNGDVLIYTGQGGNDLSG 77 (155)
T ss_dssp TSSS--TT--TT-EESSHHHHHHTTSS--SS-SEEEET----TTESEEEEEEEESSSSTTCEECSSEEEEE-SSSB--TT
T ss_pred CcEeCCCCccCccEEhHHHHHhHhccCCCccCCeeccc----CCCceeeEEEEECCCcccccCCCCEEEEEcCCCccccc
Confidence 45899999999999999999999999999999999876 3455889999999999999999999999999999865
Q ss_pred CccccCcccchhhHHHHHhhhcCceeEEEeccccCCCC-ccee-eEecCeEEEEEeEeecCCCcceEEEEEEEeecCC
Q 006009 298 SRQCEHQKLEGGNLAMERSMHYGIEVRVIRGFRYQGSV-SSKV-YVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQ 373 (665)
Q Consensus 298 ~~~~~dQ~l~~gNlAL~~S~~~~~pVRViRg~k~~~~~-~~~~-yrYDGLY~V~~~w~e~g~~G~~v~kf~L~R~~gQ 373 (665)
.+|..||+|++||+||++|+++++|||||||++..+.+ |..+ |||||||+|+++|.+++++|+.||||+|+|+|||
T Consensus 78 ~~~~~dQ~l~~gN~AL~~S~~~~~PVRViR~~~~~~~~ap~~g~yrYDGLY~V~~~w~~~g~~G~~v~kF~L~R~~gQ 155 (155)
T PF02182_consen 78 NKQPKDQKLERGNLALANSMKTGNPVRVIRGYKLKSSYAPKGGIYRYDGLYKVVKYWREKGKSGFKVFKFKLVRLPGQ 155 (155)
T ss_dssp T-B-S---SSHHHHHHHHHSGGS-EEEEEEEGGGGGTTS-SSS-EEEEEEEEEEEEEEEE-TTSSEEEEEEEEE-TSS
T ss_pred ccccccccccchhHHHHHHHhcCCCeEEEeecCCCCccCCcCCCEEeCcEEEEEEEEEEeCCCCcEEEEEEEEECCCC
Confidence 67999999999999999999999999999999998764 7777 9999999999999999999999999999999998
No 3
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.1e-52 Score=453.91 Aligned_cols=295 Identities=38% Similarity=0.591 Sum_probs=242.1
Q ss_pred CcceeeEecCeEEEEEeEeecCCCcceEEEEEEEeecCCCCCcchheeecccccCCCCccCCCCceeeecccccccccee
Q 006009 335 VSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEMGSAILRFADSLRTKPLSVRPKGYLSLDISGKKENVPVL 414 (665)
Q Consensus 335 ~~~~~yrYDGLY~V~~~w~e~g~~G~~v~kf~L~R~~gQ~~l~s~~~k~~~~l~~~~~~~~~~g~i~~DiS~G~E~~PV~ 414 (665)
.....++|+|.+.+...|. .+.....+++.+..||+.|.|++||+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~d~~~~~e~~~v~ 75 (364)
T KOG1082|consen 31 LDSLGLRPKGIASDIVAGM-----------------------------------ANDKDKLEAKSELEDIALGSENLPVP 75 (364)
T ss_pred cCccccccCCceeeehhhh-----------------------------------cccccccccccccccccCccccCcee
Confidence 3567788888888887666 01111233567789999999999999
Q ss_pred eeeCCCCCCCCCCcEEcccccCCCccccCCCCCCCCCCCCCCCCC----CccccccCCCceecCCC---ceecCCCeEee
Q 006009 415 LFNDIDGDYEPLYYEYLVRTVFPPFVFTQGSNGAGCDCVSGCTDR----CFCAVKNGGEFAYDHNG---YLLRGKPVIFE 487 (665)
Q Consensus 415 vvN~vD~e~~P~~F~YI~~~~~~~~~~~~~~~~~gC~C~~~C~~~----C~C~~~ngg~~~Y~~~G---~L~~~~~~i~E 487 (665)
++|+||++.+ ..|+|++..++.++.........+|.|...|... |.|...|++.++|+.+| .+...+..+||
T Consensus 76 ~~n~id~~~~-~~f~y~~~~~~~~~~~~~~~~~~~c~C~~~~~~~~~~~C~C~~~n~~~~~~~~~~~~~~~~~~~~~i~E 154 (364)
T KOG1082|consen 76 LVNRIDEDAP-LYFQYIATEIVDPGELSDCENSTGCRCCSSCSSVLPLTCLCERHNGGLVAYTCDGDCGTLGKFKEPVFE 154 (364)
T ss_pred eeeeccCCcc-ccceeccccccCccccccCccccCCCccCCCCCCCCccccChHhhCCccccccCCccccccccCccccc
Confidence 9999998876 8999999999988644455688899999988752 99999999999999988 77788889999
Q ss_pred cCCCCCCCCCCcCcccccCCcccEEEEEcCCCCccceecccccCCceEEEeeceeecHHHHHHhhcCCCeecccCc-ccc
Q 006009 488 CGAFCQCPPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSMNGDSLIYPNR-FSA 566 (665)
Q Consensus 488 C~~~C~C~~~C~NRv~Q~G~k~~LeVfrT~~kGwGVrA~e~I~kGtFIcEY~GEVit~~ea~~r~~~~d~ylf~~~-~~~ 566 (665)
|++.|+|+++|.|||+|+|++.+||||+|..+|||||+++.|++|+|||||+||+++..+++.+..+++......+ ...
T Consensus 155 C~~~C~C~~~C~nRv~q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~~~~~~~~~~~~ 234 (364)
T KOG1082|consen 155 CSVACGCHPDCANRVVQKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLREYLDDDCDAYSI 234 (364)
T ss_pred cccCCCCCCcCcchhhccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhccccccccccccccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999977544332222121 111
Q ss_pred ccCcCCCCccccccCCCCCCCCCCCCceEEeccccCCccccccCCCCCCeeEEEEEEcCCCCcccEEEEEEccCCCCCCe
Q 006009 567 RWGEWGDLSQVFSDYMRPSHPSIPPLDFAMDVSRMRNVACYISHSPTPNVMVQFVLYDHNNLMFPHLMLFALENIPPLRE 646 (665)
Q Consensus 567 ~~~~~~dl~~~~~~~~~~~~~~~~~~~~~IDA~~~GNvARFINHSC~PN~~~q~V~~d~~d~~~prI~fFA~rdI~pGEE 646 (665)
.+..+.+............+.......+.|||+..||++|||||||+||++++.|+.++.++.++||+|||+++|+||||
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~E 314 (364)
T KOG1082|consen 235 ADREWVDESPVGNTFVAPSLPGGPGRELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEE 314 (364)
T ss_pred hhccccccccccccccccccccCCCcceEEchhhcccccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcc
Confidence 22233333333444445566667788999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCc------------cCCCccccCC
Q 006009 647 LSIDYGVAD------------EWSGKLAICN 665 (665)
Q Consensus 647 LT~DYG~~~------------~~~~k~C~CG 665 (665)
||||||... ....+.|.||
T Consensus 315 LT~dYg~~~~~~~~~~~~~~~~~~~~~c~c~ 345 (364)
T KOG1082|consen 315 LTLDYGKAYKLLVQDGANIYTPVMKKNCNCG 345 (364)
T ss_pred cchhhcccccccccccccccccccchhhcCC
Confidence 999999762 2356678776
No 4
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-39 Score=359.45 Aligned_cols=169 Identities=27% Similarity=0.461 Sum_probs=146.6
Q ss_pred CCCCCCCCC----------CCCCCCccccccCCCceecCCCceecCCCeEeecCC-CCC-CCCCCcCcccccCCcccEEE
Q 006009 446 NGAGCDCVS----------GCTDRCFCAVKNGGEFAYDHNGYLLRGKPVIFECGA-FCQ-CPPTCRNRVSQRGLRNRLEV 513 (665)
Q Consensus 446 ~~~gC~C~~----------~C~~~C~C~~~ngg~~~Y~~~G~L~~~~~~i~EC~~-~C~-C~~~C~NRv~Q~G~k~~LeV 513 (665)
...-|+|.. +|+.+|.|... ..||++ .|. |+..|.|+.+|+..-.+++|
T Consensus 64 ~~m~Cdc~~~~~d~~n~~~~cg~~CiNr~t-------------------~iECs~~~C~~cg~~C~NQRFQkkqyA~vev 124 (729)
T KOG4442|consen 64 DEMICDCKPKTGDGANGACACGEDCINRMT-------------------SIECSDRECPRCGVYCKNQRFQKKQYAKVEV 124 (729)
T ss_pred cceeeecccccccccccccccCccccchhh-------------------hcccCCccCCCccccccchhhhhhccCceeE
Confidence 344688874 25667777653 689999 999 99999999999999999999
Q ss_pred EEcCCCCccceecccccCCceEEEeeceeecHHHHHHhhc----CC--CeecccCccccccCcCCCCccccccCCCCCCC
Q 006009 514 FRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSM----NG--DSLIYPNRFSARWGEWGDLSQVFSDYMRPSHP 587 (665)
Q Consensus 514 frT~~kGwGVrA~e~I~kGtFIcEY~GEVit~~ea~~r~~----~~--d~ylf~~~~~~~~~~~~dl~~~~~~~~~~~~~ 587 (665)
|+|..|||||||.++|++|+||.||.||||+..|.+.|.. ++ +.|++
T Consensus 125 F~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~kh~Yfm--------------------------- 177 (729)
T KOG4442|consen 125 FLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIKHYYFM--------------------------- 177 (729)
T ss_pred EEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCCceEEEE---------------------------
Confidence 9999999999999999999999999999999999987742 22 22222
Q ss_pred CCCCCceEEeccccCCccccccCCCCCCeeEEEEEEcCCCCcccEEEEEEccCCCCCCeEEEecCCCc-cCCCccccCC
Q 006009 588 SIPPLDFAMDVSRMRNVACYISHSPTPNVMVQFVLYDHNNLMFPHLMLFALENIPPLRELSIDYGVAD-EWSGKLAICN 665 (665)
Q Consensus 588 ~~~~~~~~IDA~~~GNvARFINHSC~PN~~~q~V~~d~~d~~~prI~fFA~rdI~pGEELT~DYG~~~-~~~~k~C~CG 665 (665)
.....++|||+.+||+||||||||+|||.++.|.+.+. .||+|||.|.|+|||||||||++++ .-..+.|+||
T Consensus 178 -~L~~~e~IDAT~KGnlaRFiNHSC~PNa~~~KWtV~~~----lRvGiFakk~I~~GEEITFDYqf~rYGr~AQ~CyCg 251 (729)
T KOG4442|consen 178 -ALQGGEYIDATKKGNLARFINHSCDPNAEVQKWTVPDE----LRVGIFAKKVIKPGEEITFDYQFDRYGRDAQPCYCG 251 (729)
T ss_pred -EecCCceecccccCcHHHhhcCCCCCCceeeeeeeCCe----eEEEEeEecccCCCceeeEecccccccccccccccC
Confidence 22346899999999999999999999999999999985 7999999999999999999999994 4678999998
No 5
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=100.00 E-value=3.2e-37 Score=342.72 Aligned_cols=151 Identities=31% Similarity=0.562 Sum_probs=120.7
Q ss_pred CCceeeeccccccccceeeeeCCCCCCCCCCcEEcccccCCCcccc--CCCCCCCCCCCCCCCC--CCccccccC-----
Q 006009 397 KGYLSLDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVFPPFVFT--QGSNGAGCDCVSGCTD--RCFCAVKNG----- 467 (665)
Q Consensus 397 ~g~i~~DiS~G~E~~PV~vvN~vD~e~~P~~F~YI~~~~~~~~~~~--~~~~~~gC~C~~~C~~--~C~C~~~ng----- 467 (665)
+++.+.||+.|+|.+||.++|++|..++| .+.|-...+-..+.+. .+++.++|+|..+|.+ .|+|.+..-
T Consensus 671 p~~~~~Di~~g~e~vpis~~neids~~lp-q~ay~K~~ip~~~nl~n~~~~fl~scdc~~gcid~~kcachQltvk~~~t 749 (1262)
T KOG1141|consen 671 PGNRCTDIPCGREHVPISEKNEIDSHRLP-QAAYKKHMIPTNNNLSNRRKDFLQSCDCPTGCIDSMKCACHQLTVKKKTT 749 (1262)
T ss_pred CcceeccccCCccccccceeecccCcCCc-cchhheeeccCCCcccccChhhhhcCCCCcchhhhhhhhHHHHHHHhhcc
Confidence 47889999999999999999999987644 6899766665555542 3468999999999986 699986421
Q ss_pred ---CCceec---CCCceecC-CCeEeecCCCCCCC-CCCcCcccccCCcccEEEEEcCCCCccceecccccCCceEEEee
Q 006009 468 ---GEFAYD---HNGYLLRG-KPVIFECGAFCQCP-PTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYA 539 (665)
Q Consensus 468 ---g~~~Y~---~~G~L~~~-~~~i~EC~~~C~C~-~~C~NRv~Q~G~k~~LeVfrT~~kGwGVrA~e~I~kGtFIcEY~ 539 (665)
+..+-+ +-.+|.+. +..+|||+..|+|. +.|.||++|+|.+++|++|+|..||||+|++++|.+|+|||-|.
T Consensus 750 ~p~~~v~~t~gykyKRl~e~~ptg~yEc~k~ckc~~~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~ 829 (1262)
T KOG1141|consen 750 GPNQNVASTNGYKYKRLIEIRPTGPYECLKACKCCGPDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYP 829 (1262)
T ss_pred CCCcccccCcchhhHHHHHhcCCCHHHHHHhhccCcHHHHHHHhhcCceeEeeeccccccccceEeeeecCCceEEEEec
Confidence 111111 11234333 33589999999986 69999999999999999999999999999999999999999999
Q ss_pred ceeecHHHH
Q 006009 540 GVVLTMEQA 548 (665)
Q Consensus 540 GEVit~~ea 548 (665)
|-+++++-+
T Consensus 830 g~~l~~~~s 838 (1262)
T KOG1141|consen 830 GGALLHQIS 838 (1262)
T ss_pred chhhhhhhc
Confidence 999886543
No 6
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.95 E-value=3.1e-28 Score=269.57 Aligned_cols=163 Identities=26% Similarity=0.465 Sum_probs=137.6
Q ss_pred CCCCCCCCCCCCCC-CccccccCCCceecCCCceecCCCeEeecCC-CCCC-C---------CCCcCcccccCCcccEEE
Q 006009 446 NGAGCDCVSGCTDR-CFCAVKNGGEFAYDHNGYLLRGKPVIFECGA-FCQC-P---------PTCRNRVSQRGLRNRLEV 513 (665)
Q Consensus 446 ~~~gC~C~~~C~~~-C~C~~~ngg~~~Y~~~G~L~~~~~~i~EC~~-~C~C-~---------~~C~NRv~Q~G~k~~LeV 513 (665)
.+.||.|...|... |+|.+. ..||.| .|.| + -+|.|--+|+|.+.++.|
T Consensus 538 rF~GC~Ck~QC~tkqCpC~~A-------------------~rECdPd~Cl~cg~~~~~d~~~~~C~N~~l~~~~qkr~ll 598 (739)
T KOG1079|consen 538 RFPGCRCKAQCNTKQCPCYLA-------------------VRECDPDVCLMCGNVDHFDSSKISCKNTNLQRGEQKRVLL 598 (739)
T ss_pred cCCCCCcccccccCcCchhhh-------------------ccccCchHHhccCcccccccCccccccchhhhhhhcceee
Confidence 56688887778764 888763 689997 6664 2 289999999999999999
Q ss_pred EEcCCCCccceecccccCCceEEEeeceeecHHHHHHhhcCCCeecccCccccccCcCCCCccccccCCCCCCCCCCCCc
Q 006009 514 FRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSMNGDSLIYPNRFSARWGEWGDLSQVFSDYMRPSHPSIPPLD 593 (665)
Q Consensus 514 frT~~kGwGVrA~e~I~kGtFIcEY~GEVit~~ea~~r~~~~d~ylf~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~ 593 (665)
-.+..-|||+|+++...+++||.||+||+|+++||++|..-.|.|.. +|......+
T Consensus 599 apSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~c------------------------SflFnln~d 654 (739)
T KOG1079|consen 599 APSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYMC------------------------SFLFNLNND 654 (739)
T ss_pred chhhccccceeeccccCCCceeeeecceeccchhhhhcccccccccc------------------------eeeeecccc
Confidence 99999999999999999999999999999999999998653222211 122233457
Q ss_pred eEEeccccCCccccccCCCCCCeeEEEEEEcCCCCcccEEEEEEccCCCCCCeEEEecCCCc
Q 006009 594 FAMDVSRMRNVACYISHSPTPNVMVQFVLYDHNNLMFPHLMLFALENIPPLRELSIDYGVAD 655 (665)
Q Consensus 594 ~~IDA~~~GNvARFINHSC~PN~~~q~V~~d~~d~~~prI~fFA~rdI~pGEELT~DYG~~~ 655 (665)
|+|||+++||.+||+|||-+|||++..+++.+. .||+|||.|.|.+||||||||+|+.
T Consensus 655 yviDs~rkGnk~rFANHS~nPNCYAkvm~V~Gd----hRIGifAkRaIeagEELffDYrYs~ 712 (739)
T KOG1079|consen 655 YVIDSTRKGNKIRFANHSFNPNCYAKVMMVAGD----HRIGIFAKRAIEAGEELFFDYRYSP 712 (739)
T ss_pred ceEeeeeecchhhhccCCCCCCcEEEEEEecCC----cceeeeehhhcccCceeeeeeccCc
Confidence 999999999999999999999999988888775 7999999999999999999999984
No 7
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=6.4e-25 Score=258.10 Aligned_cols=124 Identities=24% Similarity=0.449 Sum_probs=108.2
Q ss_pred cEEEEEcCCCCccceecccccCCceEEEeeceeecHHHHHHhhc------CCCeecccCccccccCcCCCCccccccCCC
Q 006009 510 RLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSM------NGDSLIYPNRFSARWGEWGDLSQVFSDYMR 583 (665)
Q Consensus 510 ~LeVfrT~~kGwGVrA~e~I~kGtFIcEY~GEVit~~ea~~r~~------~~d~ylf~~~~~~~~~~~~dl~~~~~~~~~ 583 (665)
+|..-++..+||||||++.|.+|++|.||+||+|...-|+.|+. -++.|+|..
T Consensus 867 ~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfri--------------------- 925 (1005)
T KOG1080|consen 867 YVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRI--------------------- 925 (1005)
T ss_pred hhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeec---------------------
Confidence 46666788899999999999999999999999998877766542 145666632
Q ss_pred CCCCCCCCCceEEeccccCCccccccCCCCCCeeEEEEEEcCCCCcccEEEEEEccCCCCCCeEEEecCCCccCCCcccc
Q 006009 584 PSHPSIPPLDFAMDVSRMRNVACYISHSPTPNVMVQFVLYDHNNLMFPHLMLFALENIPPLRELSIDYGVADEWSGKLAI 663 (665)
Q Consensus 584 ~~~~~~~~~~~~IDA~~~GNvARFINHSC~PN~~~q~V~~d~~d~~~prI~fFA~rdI~pGEELT~DYG~~~~~~~k~C~ 663 (665)
+...+|||+++||+||||||||+|||++....++++ .+|+|||.|+|.+||||||||.+.-+...-.|+
T Consensus 926 -------d~~~ViDAtk~gniAr~InHsC~PNCyakvi~V~g~----~~IvIyakr~I~~~EElTYDYkF~~e~~kipCl 994 (1005)
T KOG1080|consen 926 -------DDEVVVDATKKGNIARFINHSCNPNCYAKVITVEGD----KRIVIYSKRDIAAGEELTYDYKFPTEDDKIPCL 994 (1005)
T ss_pred -------ccceEEeccccCchhheeecccCCCceeeEEEecCe----eEEEEEEecccccCceeeeeccccccccccccc
Confidence 346899999999999999999999999999999987 699999999999999999999999777788999
Q ss_pred CC
Q 006009 664 CN 665 (665)
Q Consensus 664 CG 665 (665)
||
T Consensus 995 Cg 996 (1005)
T KOG1080|consen 995 CG 996 (1005)
T ss_pred cC
Confidence 98
No 8
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.88 E-value=4.2e-22 Score=177.51 Aligned_cols=110 Identities=40% Similarity=0.687 Sum_probs=91.2
Q ss_pred cEEEEEcCCCCccceecccccCCceEEEeeceeecHHHHHHhhc----CC--CeecccCccccccCcCCCCccccccCCC
Q 006009 510 RLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSM----NG--DSLIYPNRFSARWGEWGDLSQVFSDYMR 583 (665)
Q Consensus 510 ~LeVfrT~~kGwGVrA~e~I~kGtFIcEY~GEVit~~ea~~r~~----~~--d~ylf~~~~~~~~~~~~dl~~~~~~~~~ 583 (665)
++++++++.+|+||+|.++|++|++|++|.|+++...++..... .+ ..++|.
T Consensus 1 ~~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 58 (116)
T smart00317 1 KLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFE---------------------- 58 (116)
T ss_pred CcEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEE----------------------
Confidence 36888999999999999999999999999999999877665321 11 122220
Q ss_pred CCCCCCCCCceEEeccccCCccccccCCCCCCeeEEEEEEcCCCCcccEEEEEEccCCCCCCeEEEec
Q 006009 584 PSHPSIPPLDFAMDVSRMRNVACYISHSPTPNVMVQFVLYDHNNLMFPHLMLFALENIPPLRELSIDY 651 (665)
Q Consensus 584 ~~~~~~~~~~~~IDA~~~GNvARFINHSC~PN~~~q~V~~d~~d~~~prI~fFA~rdI~pGEELT~DY 651 (665)
....++||+...||++|||||||.||+.++.+..++. .++.|+|+|||++|||||+||
T Consensus 59 ------~~~~~~id~~~~~~~~~~iNHsc~pN~~~~~~~~~~~----~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 59 ------IDSDLCIDARRKGNIARFINHSCEPNCELLFVEVNGD----SRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred ------CCCCEEEeCCccCcHHHeeCCCCCCCEEEEEEEECCC----cEEEEEECCCcCCCCEEeecC
Confidence 0125799999999999999999999999998888764 389999999999999999999
No 9
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.86 E-value=7e-23 Score=234.44 Aligned_cols=130 Identities=36% Similarity=0.519 Sum_probs=107.8
Q ss_pred CcCccccc-CCcccEEEEEcCCCCccceecccccCCceEEEeeceeecHHHHHHhhcCCCeecccCccccccCcCCCCcc
Q 006009 498 CRNRVSQR-GLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSMNGDSLIYPNRFSARWGEWGDLSQ 576 (665)
Q Consensus 498 C~NRv~Q~-G~k~~LeVfrT~~kGwGVrA~e~I~kGtFIcEY~GEVit~~ea~~r~~~~d~ylf~~~~~~~~~~~~dl~~ 576 (665)
|.|+.+|+ +.-.+|+||+.+.+||||+++++|++|+|||||+|||++.++.+.+-+ -+|..+
T Consensus 1166 c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mm----tl~~~d------------- 1228 (1306)
T KOG1083|consen 1166 CSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMM----TLYHND------------- 1228 (1306)
T ss_pred hhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhccccc----ccCCCC-------------
Confidence 77777776 566799999999999999999999999999999999999988665411 111110
Q ss_pred ccccCCCCCCCCCCCCceEEeccccCCccccccCCCCCCeeEEEEEEcCCCCcccEEEEEEccCCCCCCeEEEecCCC
Q 006009 577 VFSDYMRPSHPSIPPLDFAMDVSRMRNVACYISHSPTPNVMVQFVLYDHNNLMFPHLMLFALENIPPLRELSIDYGVA 654 (665)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~IDA~~~GNvARFINHSC~PN~~~q~V~~d~~d~~~prI~fFA~rdI~pGEELT~DYG~~ 654 (665)
.+++.-.+..+.+||+.++||.+||+||||.|||.+|.|.+.+. .|+++||+|||.+||||||||+.-
T Consensus 1229 ------~~~~cL~I~p~l~id~~R~~n~~RfinhscKPNc~~qkwSVNG~----~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1229 ------DDHYCLVIDPGLFIDIPRMGNGARFINHSCKPNCEMQKWSVNGE----YRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred ------CcccccccCccccCChhhccccccccccccCCCCccccccccce----eeeeeeecCCCCCCceEEEecccc
Confidence 01222234557889999999999999999999999999999985 899999999999999999999876
No 10
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=99.83 E-value=3e-21 Score=172.99 Aligned_cols=99 Identities=45% Similarity=0.886 Sum_probs=73.9
Q ss_pred eccccccccceeeeeCCCCCCCCCCcEEcccccCCCccc-cCCCCCCCCCCCCCCC--CCCccccccCCCceecCCCcee
Q 006009 403 DISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVFPPFVF-TQGSNGAGCDCVSGCT--DRCFCAVKNGGEFAYDHNGYLL 479 (665)
Q Consensus 403 DiS~G~E~~PV~vvN~vD~e~~P~~F~YI~~~~~~~~~~-~~~~~~~gC~C~~~C~--~~C~C~~~ngg~~~Y~~~G~L~ 479 (665)
|||+|+|.+||+++|+||++.+|+.|+||.++++..++. .......||+|.++|. .+|.|.+++++.++|+.+|+|.
T Consensus 1 Dis~g~e~~pI~~~N~vd~~~~p~~F~Yi~~~~~~~~~~~~~~~~~~~C~C~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~ 80 (103)
T PF05033_consen 1 DISRGKENVPIPVVNDVDDEPPPPNFEYIPENIYGEGVPDIDPEFLQGCDCSGDCSNPSNCECLQRNGGIFAYDSNGRLR 80 (103)
T ss_dssp -TTCTSSSS-EEEEESSSS--SSTSSEE-SS-EESTTSS-TBGGGTS----SSSSTCTTTSHHHCCTSSS-SB-TTSSBS
T ss_pred CCCCCccCCCEEEEeCCCCCCCCCCeEEeeeEEcCCCccccccccCccCccCCCCCCCCCCcCccccCccccccCCCcCc
Confidence 899999999999999999999889999999999998875 3345788999999993 5799999998889999999998
Q ss_pred -cCCCeEeecCCCCCCCCCCcCc
Q 006009 480 -RGKPVIFECGAFCQCPPTCRNR 501 (665)
Q Consensus 480 -~~~~~i~EC~~~C~C~~~C~NR 501 (665)
....+||||++.|+|+.+|.||
T Consensus 81 ~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 81 IPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp SSSTSEEE---TTSSS-TTSTT-
T ss_pred cCCCCeEEeCCCCCCCCCCCCCC
Confidence 6788999999999999999998
No 11
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=99.81 E-value=3e-20 Score=165.65 Aligned_cols=92 Identities=46% Similarity=0.829 Sum_probs=83.8
Q ss_pred eeccccccccceeeeeCCCCCCCCCCcEEcccccCCCccc--cCCCCCCCCCCCCCCCCC--CccccccCCCcee-cCCC
Q 006009 402 LDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVFPPFVF--TQGSNGAGCDCVSGCTDR--CFCAVKNGGEFAY-DHNG 476 (665)
Q Consensus 402 ~DiS~G~E~~PV~vvN~vD~e~~P~~F~YI~~~~~~~~~~--~~~~~~~gC~C~~~C~~~--C~C~~~ngg~~~Y-~~~G 476 (665)
.|||+|+|++||++||+||++.+|..|+||++++++.++. ....+..||+|.++|.+. |.|.+++++.|+| ...+
T Consensus 2 ~Dis~G~E~~pI~~vN~vD~~~~p~~F~Yi~~~~~~~gv~~~~~~~~~~gC~C~~~C~~~~~C~C~~~~~~~~~Y~~~~~ 81 (98)
T smart00468 2 LDISNGKENVPVPLVNEVDEDPPPPDFEYISEYIYGQGVPIDRSPSPLVGCSCSGDCSSSNKCECARKNGGEFAYELNGG 81 (98)
T ss_pred ccccCCccCCCcceEecCCCCCCCCCcEECcceEcCCCcccccCCCCCCCCcCCCCCCCCCcCCcHhhcCCccCcccCCC
Confidence 6999999999999999999999889999999999999874 355789999999999874 9999999999999 6777
Q ss_pred ceecCCCeEeecCCCCC
Q 006009 477 YLLRGKPVIFECGAFCQ 493 (665)
Q Consensus 477 ~L~~~~~~i~EC~~~C~ 493 (665)
.++..+++|||||+.|+
T Consensus 82 ~~~~~~~~IyECn~~C~ 98 (98)
T smart00468 82 LRLKRKPLIYECNSRCS 98 (98)
T ss_pred EEeCCCCEEEcCCCCCC
Confidence 78888999999999985
No 12
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.65 E-value=2e-16 Score=161.71 Aligned_cols=121 Identities=26% Similarity=0.400 Sum_probs=96.9
Q ss_pred cCCcccEEEEEcCCCCccceecccccCCceEEEeeceeecHHHHHHhhc------CCCeecccCccccccCcCCCCcccc
Q 006009 505 RGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSM------NGDSLIYPNRFSARWGEWGDLSQVF 578 (665)
Q Consensus 505 ~G~k~~LeVfrT~~kGwGVrA~e~I~kGtFIcEY~GEVit~~ea~~r~~------~~d~ylf~~~~~~~~~~~~dl~~~~ 578 (665)
.|....|.+..-..||.||+|...+.+|+||.||.|.+|.-.|+..++. +-..|+|- |
T Consensus 252 ~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYy--F-------------- 315 (392)
T KOG1085|consen 252 KGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYY--F-------------- 315 (392)
T ss_pred hccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEe--e--------------
Confidence 3444456665566699999999999999999999999999888876542 11123330 0
Q ss_pred ccCCCCCCCCCCCCceEEecccc-CCccccccCCCCCCeeEEEEEEcCCCCcccEEEEEEccCCCCCCeEEEecCCC
Q 006009 579 SDYMRPSHPSIPPLDFAMDVSRM-RNVACYISHSPTPNVMVQFVLYDHNNLMFPHLMLFALENIPPLRELSIDYGVA 654 (665)
Q Consensus 579 ~~~~~~~~~~~~~~~~~IDA~~~-GNvARFINHSC~PN~~~q~V~~d~~d~~~prI~fFA~rdI~pGEELT~DYG~~ 654 (665)
......|||||+.- +-++|.||||-.+||....|.+++. ||+.+.|.|||.+||||+||||.-
T Consensus 316 ---------~h~sk~yCiDAT~et~~lGRLINHS~~gNl~TKvv~Idg~----pHLiLvA~rdIa~GEELlYDYGDR 379 (392)
T KOG1085|consen 316 ---------EHNSKKYCIDATKETPWLGRLINHSVRGNLKTKVVEIDGS----PHLILVARRDIAQGEELLYDYGDR 379 (392)
T ss_pred ---------eccCeeeeeecccccccchhhhcccccCcceeeEEEecCC----ceEEEEeccccccchhhhhhcccc
Confidence 01234799999875 6689999999999999999999986 999999999999999999999976
No 13
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.52 E-value=7e-15 Score=165.16 Aligned_cols=144 Identities=26% Similarity=0.275 Sum_probs=109.7
Q ss_pred ecCCCCCCCCCCcCcccccCCcccEEEEEcCCCCccceecccccCCceEEEeeceeecHHHHHHhhcCCCeecccCcccc
Q 006009 487 ECGAFCQCPPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSMNGDSLIYPNRFSA 566 (665)
Q Consensus 487 EC~~~C~C~~~C~NRv~Q~G~k~~LeVfrT~~kGwGVrA~e~I~kGtFIcEY~GEVit~~ea~~r~~~~d~ylf~~~~~~ 566 (665)
++...+.+...|.|...+........+..+..+||||||++.|++|+||.+|.|+++...++..+..+...+-+..
T Consensus 310 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 385 (480)
T COG2940 310 FSKSNVSKLKELLNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGNEF---- 385 (480)
T ss_pred cccccCccccchhhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhcccccccccc----
Confidence 3444455555677776777777778888889999999999999999999999999999988876654321111100
Q ss_pred ccCcCCCCccccccCCCCCCCCCCCCceEEeccccCCccccccCCCCCCeeEEEEEEcCCCCcccEEEEEEccCCCCCCe
Q 006009 567 RWGEWGDLSQVFSDYMRPSHPSIPPLDFAMDVSRMRNVACYISHSPTPNVMVQFVLYDHNNLMFPHLMLFALENIPPLRE 646 (665)
Q Consensus 567 ~~~~~~dl~~~~~~~~~~~~~~~~~~~~~IDA~~~GNvARFINHSC~PN~~~q~V~~d~~d~~~prI~fFA~rdI~pGEE 646 (665)
.+. ......+++|+...|+++|||||||.||+.+......+ ..++.++|++||.+|||
T Consensus 386 ------~~~------------~~~~~~~~~d~~~~g~~~r~~nHS~~pN~~~~~~~~~g----~~~~~~~~~rDI~~geE 443 (480)
T COG2940 386 ------SFG------------LLEDKDKVRDSQKAGDVARFINHSCTPNCEASPIEVNG----IFKISIYAIRDIKAGEE 443 (480)
T ss_pred ------chh------------hccccchhhhhhhcccccceeecCCCCCcceecccccc----cceeeecccccchhhhh
Confidence 000 00111568899999999999999999999987766654 46899999999999999
Q ss_pred EEEecCCCcc
Q 006009 647 LSIDYGVADE 656 (665)
Q Consensus 647 LT~DYG~~~~ 656 (665)
||+||+..-+
T Consensus 444 l~~dy~~~~~ 453 (480)
T COG2940 444 LTYDYGPSLE 453 (480)
T ss_pred hccccccccc
Confidence 9999998733
No 14
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.37 E-value=1.3e-12 Score=121.05 Aligned_cols=55 Identities=27% Similarity=0.268 Sum_probs=45.5
Q ss_pred eEEeccccCCccccccCCCCCCeeEEEEEEcCCCCcccEEEEEEccCCCCCCeEEEecC
Q 006009 594 FAMDVSRMRNVACYISHSPTPNVMVQFVLYDHNNLMFPHLMLFALENIPPLRELSIDYG 652 (665)
Q Consensus 594 ~~IDA~~~GNvARFINHSC~PN~~~q~V~~d~~d~~~prI~fFA~rdI~pGEELT~DYG 652 (665)
...+..-...++.|+||||.|||.+........ .++.|.|.|+|++||||+++||
T Consensus 108 ~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~----~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 108 DDRDGIALYPFADMLNHSCDPNCEVSFDFDGDG----GCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEEEETGGGGSEEESSTSEEEEEEEETTT----TEEEEEESS-B-TTSBEEEEST
T ss_pred ccccccccCcHhHheccccccccceeeEeeccc----ceEEEEECCccCCCCEEEEEEC
Confidence 345677788899999999999999887765443 5999999999999999999998
No 15
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=98.88 E-value=2e-09 Score=122.59 Aligned_cols=271 Identities=25% Similarity=0.397 Sum_probs=183.0
Q ss_pred CccCCCCceeeeccccccccceeeeeCCCCCCCCC------CcEEcccccCCCccccCCCCCCCCCCCCCCCC--CCccc
Q 006009 392 LSVRPKGYLSLDISGKKENVPVLLFNDIDGDYEPL------YYEYLVRTVFPPFVFTQGSNGAGCDCVSGCTD--RCFCA 463 (665)
Q Consensus 392 ~~~~~~g~i~~DiS~G~E~~PV~vvN~vD~e~~P~------~F~YI~~~~~~~~~~~~~~~~~gC~C~~~C~~--~C~C~ 463 (665)
.++...|+=..|.+.|.+.+|||++|.+|++.+|. .|.|..+.-... ...++..||.|.+.|.+ .|.|.
T Consensus 868 ~tvD~~g~d~~d~~~g~sg~~~p~~~~~d~~~~~~c~d~~~~~~~~~~~~~s~---~~~~~~~~~s~d~hp~d~~~~~~~ 944 (1262)
T KOG1141|consen 868 ITVDDKGLDVADFSLGTSGIPIPLVNSVDNDEPPSCEDSKRRFQYNDQVDISS---VSRDFCSGCSCDGHPSDASKCECQ 944 (1262)
T ss_pred eeccccccchhhhhccccCCCCccccccccCCCccccccceeecccccchhhh---hccccccccccCCCCcccCcccCC
Confidence 34444577788999999999999999999987664 233332221111 12357889999999986 68887
Q ss_pred cccC---CCc--eecCCCc--eec--------CCCeEeecCCCCCCCCCCcCcccccCCcccEE--------EEEcCCCC
Q 006009 464 VKNG---GEF--AYDHNGY--LLR--------GKPVIFECGAFCQCPPTCRNRVSQRGLRNRLE--------VFRSRETG 520 (665)
Q Consensus 464 ~~ng---g~~--~Y~~~G~--L~~--------~~~~i~EC~~~C~C~~~C~NRv~Q~G~k~~Le--------VfrT~~kG 520 (665)
+..- +.+ +...+|. ++. .+-..+||+..|.|...|.||++|.+.+.++| ||++..-|
T Consensus 945 ~~~~~~~~~cpp~~s~d~~~~~~eS~~~~ns~~~~~f~e~~~hss~~~~e~~~~v~~~~~~~me~~s~~~l~i~~~~~~~ 1024 (1262)
T KOG1141|consen 945 QLSIEAMKRCPPNLSFDGHDELYESSEKQNSFLKLFFFECNDHSSCHRKEYNRVVQNNIKYPMEVSSFNDLQIFKTAQSG 1024 (1262)
T ss_pred CCChhhhcCCCCccccCchhhhhhhhhhcchhhhccceeccccchhcccccchhhhcCCccceeeeeccccccccccccc
Confidence 6431 111 1222222 111 13357899999999999999999999887654 56667789
Q ss_pred ccceecccccCCceEEEeeceeecHHHHHHhhc-CCCeecccCc-----------------c-------cc---------
Q 006009 521 WGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSM-NGDSLIYPNR-----------------F-------SA--------- 566 (665)
Q Consensus 521 wGVrA~e~I~kGtFIcEY~GEVit~~ea~~r~~-~~d~ylf~~~-----------------~-------~~--------- 566 (665)
||++...+|+.-+|||+|+|...++.-+.+... ..+.|.-+.+ | .+
T Consensus 1025 ~~~~edtD~~~~~~~~~~~~~ppt~~l~~~~r~aqad~~sn~~D~~~~~~l~es~~~~~T~~r~~t~~~~~~~~~d~dd~ 1104 (1262)
T KOG1141|consen 1025 WGVREDTDIPQSTFICTYVGAPPTDDLADELRNAQADQYSNDLDLKDTVELEESREDHETDFRGDTSDYDDEEGSDGDDG 1104 (1262)
T ss_pred ccccccccCCCCcccccccCCCCchhhHHHHhhhhhccccCccchhhhhhhhhcccccccccCCCCCCCcccccccCccH
Confidence 999999999999999999999988765543210 0011100000 0 00
Q ss_pred --------------ccCcCCC--------------CccccccCCCCC--C-----------------CCCCCCceEEecc
Q 006009 567 --------------RWGEWGD--------------LSQVFSDYMRPS--H-----------------PSIPPLDFAMDVS 599 (665)
Q Consensus 567 --------------~~~~~~d--------------l~~~~~~~~~~~--~-----------------~~~~~~~~~IDA~ 599 (665)
.-+.... ......+...+. . ...+..-|+|||+
T Consensus 1105 q~I~k~ve~qd~~~~~~~T~~~~RQ~~~~s~k~~~~~s~~~~~~ts~~~~~~dkges~~~~~~~~~~y~~~~~~yvIDAk 1184 (1262)
T KOG1141|consen 1105 QDIMKMVERQDSSESGEETKRLTRQKRKQSKKSGKGGSVEKDDTTSRDSMEKDKGESKDEPVFNWDKYFEPFPLYVIDAK 1184 (1262)
T ss_pred HHHHHHhhcccccccccccchhhhhhhhhhhhcccCccccccccCccchhhhccCccCcccccchhhccCCCceEEEecc
Confidence 0000000 000000000000 0 0011234899999
Q ss_pred ccCCccccccCCCCCCeeEEEEEEcCCCCcccEEEEEEccCCCCCCeEEEecCCC-ccC--CCccccCC
Q 006009 600 RMRNVACYISHSPTPNVMVQFVLYDHNNLMFPHLMLFALENIPPLRELSIDYGVA-DEW--SGKLAICN 665 (665)
Q Consensus 600 ~~GNvARFINHSC~PN~~~q~V~~d~~d~~~prI~fFA~rdI~pGEELT~DYG~~-~~~--~~k~C~CG 665 (665)
..||++||+||||+||+++|+|+++.+|.++|+++|||.+-|++|+||||||+|+ +.+ ..-.|.||
T Consensus 1185 ~eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CG 1253 (1262)
T KOG1141|consen 1185 QEGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCG 1253 (1262)
T ss_pred cccchhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999 333 44578887
No 16
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=98.80 E-value=1.4e-09 Score=121.69 Aligned_cols=139 Identities=21% Similarity=0.265 Sum_probs=100.6
Q ss_pred eEeecC-CCCCCCCCCcCcccccCCcccEEEEEcCCCCccceecccccCCceEEEeeceeecHHHHHHhhcC-CCeeccc
Q 006009 484 VIFECG-AFCQCPPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSMN-GDSLIYP 561 (665)
Q Consensus 484 ~i~EC~-~~C~C~~~C~NRv~Q~G~k~~LeVfrT~~kGwGVrA~e~I~kGtFIcEY~GEVit~~ea~~r~~~-~d~ylf~ 561 (665)
..+||- ..|.+...|.|+-..+..... . .+ ++..+|.+| +|++++..+...+... ...
T Consensus 288 ~~~~~~p~~~~~~~~~~~~~~sk~~~~e------~-~~---~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~---- 347 (463)
T KOG1081|consen 288 LAYEVHPKVCSAEERCHNQQFSKESYPE------P-QK---TAKADIRKG------VGEVIDDKECKARLQRVKES---- 347 (463)
T ss_pred hhhhhcccccccccccccchhhhhcccc------c-ch---hhHHhhhcc------cCcccchhhheeehhhhhcc----
Confidence 455554 589999999998765443222 2 22 888889888 9999998876543210 000
Q ss_pred CccccccCcCCCCccccccCCCCCCCCCCCCceEEeccccCCccccccCCCCCCeeEEEEEEcCCCCcccEEEEEEccCC
Q 006009 562 NRFSARWGEWGDLSQVFSDYMRPSHPSIPPLDFAMDVSRMRNVACYISHSPTPNVMVQFVLYDHNNLMFPHLMLFALENI 641 (665)
Q Consensus 562 ~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~IDA~~~GNvARFINHSC~PN~~~q~V~~d~~d~~~prI~fFA~rdI 641 (665)
++..++ .-....+..||+..+||.+||+||||+|||.-+.+.+... .++++||.++|
T Consensus 348 -----------~~~~~~--------~~~~e~~~~id~~~~~n~sr~~nh~~~~~v~~~k~~~~~~----t~~~~~a~~~i 404 (463)
T KOG1081|consen 348 -----------DLVDFY--------MVFIQKDRIIDAGPKGNYSRFLNHSCQPNVETEKWQVIGD----TRVGLFAPRQI 404 (463)
T ss_pred -----------chhhhh--------hhhhhcccccccccccchhhhhcccCCCceeechhheecc----ccccccccccc
Confidence 000000 0001112389999999999999999999999988877764 79999999999
Q ss_pred CCCCeEEEecCCCccCCCccccCC
Q 006009 642 PPLRELSIDYGVADEWSGKLAICN 665 (665)
Q Consensus 642 ~pGEELT~DYG~~~~~~~k~C~CG 665 (665)
++|+||||+|+.......+.|.||
T Consensus 405 ~~g~e~t~~~n~~~~~~~~~~~~~ 428 (463)
T KOG1081|consen 405 EAGEELTFNYNGNCEGNEKRCCCG 428 (463)
T ss_pred ccchhhhheeeccccCCcceEeec
Confidence 999999999999988888888886
No 17
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.17 E-value=9.7e-07 Score=94.13 Aligned_cols=109 Identities=20% Similarity=0.174 Sum_probs=72.6
Q ss_pred CCCccceecccccCCceEEEeeceeecHHHHHHhh-----cCCCeecccCccccccCcCCCCccccccCCCCCCCCCCCC
Q 006009 518 ETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFS-----MNGDSLIYPNRFSARWGEWGDLSQVFSDYMRPSHPSIPPL 592 (665)
Q Consensus 518 ~kGwGVrA~e~I~kGtFIcEY~GEVit~~ea~~r~-----~~~d~ylf~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~ 592 (665)
..|--|.|.+.+.+|+=|-..+|-|..-.+++.+. .++=+.+|..+..
T Consensus 136 ~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~g~nDFSvmyStRk~--------------------------- 188 (453)
T KOG2589|consen 136 QNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRGGGNDFSVMYSTRKR--------------------------- 188 (453)
T ss_pred CCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhccCCceeeeeecccc---------------------------
Confidence 35667888899999999999999886554444331 1111222221100
Q ss_pred ceEEeccccCCccccccCCCCCCeeEEEEEEcCCCCcccEEEEEEccCCCCCCeEEEecCCCcc-CCCccccC
Q 006009 593 DFAMDVSRMRNVACYISHSPTPNVMVQFVLYDHNNLMFPHLMLFALENIPPLRELSIDYGVADE-WSGKLAIC 664 (665)
Q Consensus 593 ~~~IDA~~~GNvARFINHSC~PN~~~q~V~~d~~d~~~prI~fFA~rdI~pGEELT~DYG~~~~-~~~k~C~C 664 (665)
.|..+=.-|+||||-|.|||.+. -.++ -++.+-++|||.||||||--||.... .+.-.|.|
T Consensus 189 ----caqLwLGPaafINHDCrpnCkFv--s~g~-----~tacvkvlRDIePGeEITcFYgs~fFG~~N~~CeC 250 (453)
T KOG2589|consen 189 ----CAQLWLGPAAFINHDCRPNCKFV--STGR-----DTACVKVLRDIEPGEEITCFYGSGFFGENNEECEC 250 (453)
T ss_pred ----hhhheeccHHhhcCCCCCCceee--cCCC-----ceeeeehhhcCCCCceeEEeecccccCCCCceeEE
Confidence 12234456899999999999853 2232 27888999999999999999998833 34455665
No 18
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=97.61 E-value=4.8e-05 Score=84.00 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=77.4
Q ss_pred CcccEEEEEcCC--CCccceecccccCCceEEEeecee-ecHHHHHHhhcCCCeecccCccccccCcCCCCccccccCCC
Q 006009 507 LRNRLEVFRSRE--TGWGVRSLDLIHAGAFICEYAGVV-LTMEQAQIFSMNGDSLIYPNRFSARWGEWGDLSQVFSDYMR 583 (665)
Q Consensus 507 ~k~~LeVfrT~~--kGwGVrA~e~I~kGtFIcEY~GEV-it~~ea~~r~~~~d~ylf~~~~~~~~~~~~dl~~~~~~~~~ 583 (665)
+-..|.|+.+.. .|.||++...|++|+--+-|.|++ ++..+ +........+||..+
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~~~-~~~n~~y~W~I~~~d-------------------- 84 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASIDS-KSANNRYMWEIFSSD-------------------- 84 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCcccccccc-ccccCcceEEEEeCC--------------------
Confidence 555677777654 789999999999999999999998 22211 000000111222100
Q ss_pred CCCCCCCCCceEEeccc--cCCccccccCCCCC---CeeEEEEEEcCCCCcccEEEEEEccCCCCCCeEEEecCCC
Q 006009 584 PSHPSIPPLDFAMDVSR--MRNVACYISHSPTP---NVMVQFVLYDHNNLMFPHLMLFALENIPPLRELSIDYGVA 654 (665)
Q Consensus 584 ~~~~~~~~~~~~IDA~~--~GNvARFINHSC~P---N~~~q~V~~d~~d~~~prI~fFA~rdI~pGEELT~DYG~~ 654 (665)
..-++||++. ..|+.||+|-.++. |+.+ +..+ -.|-+.|+|+|+|||||.+.|+.+
T Consensus 85 -------~~~~~iDg~d~~~sNWmRYV~~Ar~~eeQNL~A---~Q~~-----~~Ifyrt~r~I~p~eELlVWY~~e 145 (396)
T KOG2461|consen 85 -------NGYEYIDGTDEEHSNWMRYVNSARSEEEQNLLA---FQIG-----ENIFYRTIRDIRPNEELLVWYGSE 145 (396)
T ss_pred -------CceEEeccCChhhcceeeeecccCChhhhhHHH---Hhcc-----CceEEEecccCCCCCeEEEEeccc
Confidence 1246888874 79999999988864 6642 2333 278899999999999999999876
No 19
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=96.78 E-value=0.00048 Score=54.85 Aligned_cols=40 Identities=28% Similarity=0.833 Sum_probs=33.1
Q ss_pred CCCCCCC------CCCCCCccccccCCCceecCCCceecCCCeEeecCCCCCCCCCCcCcccccC
Q 006009 448 AGCDCVS------GCTDRCFCAVKNGGEFAYDHNGYLLRGKPVIFECGAFCQCPPTCRNRVSQRG 506 (665)
Q Consensus 448 ~gC~C~~------~C~~~C~C~~~ngg~~~Y~~~G~L~~~~~~i~EC~~~C~C~~~C~NRv~Q~G 506 (665)
..|+|+. +|+++|.++. +.+||+..|.|+..|+||.+|+.
T Consensus 4 ~~C~C~~~~~~~~~CgsdClNR~-------------------l~~EC~~~C~~G~~C~NqrFqk~ 49 (51)
T smart00570 4 MTCECKPTDDDEGACGSDCLNRM-------------------LLIECSSDCPCGSYCSNQRFQKR 49 (51)
T ss_pred ceeeCccCCCCCCCcchHHHHHH-------------------HhhhcCCCCCCCcCccCcccccC
Confidence 4578873 5888887765 47999999999999999999985
No 20
>COG3440 Predicted restriction endonuclease [Defense mechanisms]
Probab=94.91 E-value=0.00025 Score=74.54 Aligned_cols=141 Identities=7% Similarity=-0.167 Sum_probs=114.4
Q ss_pred ccCCCcccCceech-HhhhhhhccCcCCCCCccccCCCCCCCCCCcEEEEEEcCCcCCCCCCCCeEEEEecCCCCCCCcc
Q 006009 222 GSIPGVQIGDVFFF-RMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDEDAGDVLIYTGHGGQDKLSRQ 300 (665)
Q Consensus 222 G~vpGv~vGd~f~~-R~el~~~GlH~~~~~GI~~~~~~~~~~g~~~A~SIV~SggY~dd~D~gd~liYtG~GG~~~~~~~ 300 (665)
+.. ++..+..+-. +.+..-.+.|-|++.++. +.+-..+.+++.+|+|+++.+.+++..|++-|++.....+
T Consensus 7 ~a~-sf~~~~a~~~i~~~~~~~a~~kp~l~l~v-------~~~~~~~~~~~n~~~~~~e~~~~f~~l~~~~g~~~~~~~~ 78 (301)
T COG3440 7 YAK-SFSQRNASLKIFGGNREAAPHKPILLLDV-------GRKISTFFITENQGIYETELIEPFIQLWSFFGPKLQKYGV 78 (301)
T ss_pred hhc-chhhhhhhhhhcccccccCCcCceeehhh-------HhhhhcccccccccccchhccchHHHHHhhcCcccccCCC
Confidence 444 5555555555 667788899999999997 3455557899999999999999999999999997333334
Q ss_pred ccCcccchhhHHHHHhhhcCceeEEEeccccCCCC-cceeeEecCeEEEEEeEeecCCCcceEEEEEEEee
Q 006009 301 CEHQKLEGGNLAMERSMHYGIEVRVIRGFRYQGSV-SSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRI 370 (665)
Q Consensus 301 ~~dQ~l~~gNlAL~~S~~~~~pVRViRg~k~~~~~-~~~~yrYDGLY~V~~~w~e~g~~G~~v~kf~L~R~ 370 (665)
..-+.+..|+.+...+++.+.+-+++|+....... +...+-|-|+|.+...|.+++-.+..++.|...++
T Consensus 79 ~~p~~~l~~d~~~h~~~k~~~~~l~~~~~~~~~e~v~~~~~d~el~~~~~~~~~~~~l~~~L~~~~~~~~~ 149 (301)
T COG3440 79 DAPFELLQGDGKWHLDIKEGFDGLSIRTLPTEKEFVEYHYIDDELEQSLQYHQGEKRLIDDLISIWRKEVL 149 (301)
T ss_pred CCchHHhhccchhhhcccccCCccccCCCccHhhhhhhhhccHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence 44466789999999999999999999998876554 77888999999999999999999988888877776
No 21
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=85.06 E-value=1.1 Score=49.62 Aligned_cols=40 Identities=33% Similarity=0.469 Sum_probs=32.0
Q ss_pred cccCCCCCCeeEEEEEEcCCCCcccEEEEEEccCCCCCC-eEEEecCCC
Q 006009 607 YISHSPTPNVMVQFVLYDHNNLMFPHLMLFALENIPPLR-ELSIDYGVA 654 (665)
Q Consensus 607 FINHSC~PN~~~q~V~~d~~d~~~prI~fFA~rdI~pGE-ELT~DYG~~ 654 (665)
++||||.||+. +..+.. ..++.+...+.+++ ||+..|-..
T Consensus 208 ~~~hsC~pn~~---~~~~~~-----~~~~~~~~~~~~~~~~l~~~y~~~ 248 (482)
T KOG2084|consen 208 LFNHSCFPNIS---VIFDGR-----GLALLVPAGIDAGEEELTISYTDP 248 (482)
T ss_pred hcccCCCCCeE---EEECCc-----eeEEEeecccCCCCCEEEEeeccc
Confidence 78999999998 445543 66778888888887 999999654
No 22
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=68.36 E-value=4.1 Score=46.44 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=32.0
Q ss_pred cccCCCCCCeeEEEEEEcCCCCcccEEEEEEccCCCCCCeEEEecCCC
Q 006009 607 YISHSPTPNVMVQFVLYDHNNLMFPHLMLFALENIPPLRELSIDYGVA 654 (665)
Q Consensus 607 FINHSC~PN~~~q~V~~d~~d~~~prI~fFA~rdI~pGEELT~DYG~~ 654 (665)
+.||+|.+ ....+...| ..+-+.+.++|.+|||+.++||.-
T Consensus 239 ~~NH~~~~----~~~~~~~~d---~~~~l~~~~~v~~geevfi~YG~~ 279 (472)
T KOG1337|consen 239 LLNHSPEV----IKAGYNQED---EAVELVAERDVSAGEEVFINYGPK 279 (472)
T ss_pred hhccCchh----ccccccCCC---CcEEEEEeeeecCCCeEEEecCCC
Confidence 57999999 233344443 378889999999999999999964
No 23
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=52.46 E-value=8.9 Score=29.64 Aligned_cols=36 Identities=33% Similarity=0.835 Sum_probs=28.2
Q ss_pred CCCCCCC-CCCCC-CCccccccCCCceecCCCceecCCCeEeecCCCCCCCCCCcCcc
Q 006009 447 GAGCDCV-SGCTD-RCFCAVKNGGEFAYDHNGYLLRGKPVIFECGAFCQCPPTCRNRV 502 (665)
Q Consensus 447 ~~gC~C~-~~C~~-~C~C~~~ngg~~~Y~~~G~L~~~~~~i~EC~~~C~C~~~C~NRv 502 (665)
..||.|. ..|.. -|.|.+. -..|++.|.| ..|.|+.
T Consensus 3 ~~gC~Ckks~Clk~YC~Cf~~-------------------g~~C~~~C~C-~~C~N~~ 40 (42)
T PF03638_consen 3 KKGCNCKKSKCLKLYCECFQA-------------------GRFCTPNCKC-QNCKNTE 40 (42)
T ss_pred CCCCcccCcChhhhhCHHHHC-------------------cCcCCCCccc-CCCCCcC
Confidence 4689997 45986 4999874 3689999999 7888864
No 24
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=42.85 E-value=7.9 Score=44.28 Aligned_cols=149 Identities=10% Similarity=0.064 Sum_probs=83.7
Q ss_pred EeecCCCCCCCCCCcCcccccCCcccEEEEEcCCCCcc---ceecccccCCceEEEeeceeecHHHHHHhhcCCCeeccc
Q 006009 485 IFECGAFCQCPPTCRNRVSQRGLRNRLEVFRSRETGWG---VRSLDLIHAGAFICEYAGVVLTMEQAQIFSMNGDSLIYP 561 (665)
Q Consensus 485 i~EC~~~C~C~~~C~NRv~Q~G~k~~LeVfrT~~kGwG---VrA~e~I~kGtFIcEY~GEVit~~ea~~r~~~~d~ylf~ 561 (665)
.++|++.|.|.+.+.+- -++ . .-+.++..+|+ .++...+..|+||+.++|+..-..- .. -+ .-++.
T Consensus 95 c~~ggs~v~~~s~~~~~--~r~---c-~~~~~~~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c-~v---c~-~~~~~ 163 (463)
T KOG1081|consen 95 CFKGGSLVTCKSRIQAP--HRK---C-KPAQLEKCSKRCTDCRAFKKREVGDLVWSKVGEYPWWPC-MV---CH-DPLLP 163 (463)
T ss_pred ccCCCccceeccccccc--ccc---C-cCccCcccccCCcceeeeccccceeEEeEEcCccccccc-ce---ec-Ccccc
Confidence 45666666666555443 111 1 11234456666 8888899999999999999865541 00 00 00010
Q ss_pred CccccccCcCCCCccccccCCCCCCCCCCCCceEEeccccCCccccccCCCCCCeeEEEEEEcCCCCcccEEEEEEccCC
Q 006009 562 NRFSARWGEWGDLSQVFSDYMRPSHPSIPPLDFAMDVSRMRNVACYISHSPTPNVMVQFVLYDHNNLMFPHLMLFALENI 641 (665)
Q Consensus 562 ~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~IDA~~~GNvARFINHSC~PN~~~q~V~~d~~d~~~prI~fFA~rdI 641 (665)
.. .|.. ... +...+. -.....++...|+..++++|++.|+-....+..... +++..++.+.+
T Consensus 164 -~~--~~~~--~~~-f~~~~~--------~~~~~~~~~~~g~~~~~l~~~~~~~s~~~~~~~~~~----~r~~~~~~q~~ 225 (463)
T KOG1081|consen 164 -KG--MKHD--HVN-FFGCYA--------WTHEKRVFPYEGQSSKLIPHSKKPASTMSEKIKEAK----ARFGKLKAQWE 225 (463)
T ss_pred -hh--hccc--cce-eccchh--------hHHHhhhhhccchHHHhhhhccccchhhhhhhhccc----chhhhcccchh
Confidence 00 0000 000 000000 001122333499999999999999998888777754 67778888877
Q ss_pred CCCCe------EEEecCCCccCCCccc
Q 006009 642 PPLRE------LSIDYGVADEWSGKLA 662 (665)
Q Consensus 642 ~pGEE------LT~DYG~~~~~~~k~C 662 (665)
+-++- ++.+|........+.+
T Consensus 226 ~~~~~~e~k~~~~~~~~~~~~~~~~~~ 252 (463)
T KOG1081|consen 226 AGIKQKELKPEEYKRIKVVCPIGDQQI 252 (463)
T ss_pred hccchhhcccccccccccccCcCcccc
Confidence 77766 6666655443333333
No 25
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=41.59 E-value=9.7 Score=42.66 Aligned_cols=36 Identities=33% Similarity=1.050 Sum_probs=29.8
Q ss_pred CCCCCCCCCC-CCCCC-CccccccCCCceecCCCceecCCCeEeecCCCCCCCCCCcC
Q 006009 445 SNGAGCDCVS-GCTDR-CFCAVKNGGEFAYDHNGYLLRGKPVIFECGAFCQCPPTCRN 500 (665)
Q Consensus 445 ~~~~gC~C~~-~C~~~-C~C~~~ngg~~~Y~~~G~L~~~~~~i~EC~~~C~C~~~C~N 500 (665)
....||+|.. +|..+ |.|.+.+ .-|+..|+| ..|.|
T Consensus 215 ~hkkGC~CkkSgClKkYCECyQa~-------------------vlCS~nCkC-~~CkN 252 (406)
T KOG1171|consen 215 RHKKGCNCKKSGCLKKYCECYQAG-------------------VLCSSNCKC-QGCKN 252 (406)
T ss_pred hhcCCCCCccccchHHHHHHHhcC-------------------CCccccccC-cCCcc
Confidence 3678999986 69976 9999853 679999999 57888
No 26
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=40.89 E-value=15 Score=42.21 Aligned_cols=20 Identities=30% Similarity=0.938 Sum_probs=16.6
Q ss_pred CCCCCCCCCCCCC-CCccccc
Q 006009 446 NGAGCDCVSGCTD-RCFCAVK 465 (665)
Q Consensus 446 ~~~gC~C~~~C~~-~C~C~~~ 465 (665)
.-.||+|..-|.+ .|+|.+.
T Consensus 306 eeCGCsCr~~CdPETCaCSqa 326 (640)
T KOG3813|consen 306 EECGCSCRGVCDPETCACSQA 326 (640)
T ss_pred HhhCCcccceeChhhcchhcc
Confidence 4579999988997 6999873
No 27
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=27.28 E-value=34 Score=27.25 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=10.8
Q ss_pred EEEccCCCCCCeEE
Q 006009 635 LFALENIPPLRELS 648 (665)
Q Consensus 635 fFA~rdI~pGEELT 648 (665)
+.|.+||++|+.|+
T Consensus 4 vVA~~di~~G~~i~ 17 (63)
T PF08666_consen 4 VVAARDIPAGTVIT 17 (63)
T ss_dssp EEESSTB-TT-BEC
T ss_pred EEEeCccCCCCEEc
Confidence 67999999999995
No 28
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=27.20 E-value=28 Score=41.25 Aligned_cols=38 Identities=37% Similarity=0.806 Sum_probs=24.1
Q ss_pred CCCCCCCCCC--CCCCccccccCCCceecCCCceecCCCeEeecCCCCCCCCCCcCccc
Q 006009 447 GAGCDCVSGC--TDRCFCAVKNGGEFAYDHNGYLLRGKPVIFECGAFCQCPPTCRNRVS 503 (665)
Q Consensus 447 ~~gC~C~~~C--~~~C~C~~~ngg~~~Y~~~G~L~~~~~~i~EC~~~C~C~~~C~NRv~ 503 (665)
.+.|+=.+.| ..+|+|... -.-|...|.|.+.|+||.-
T Consensus 501 ~qpC~hp~~c~c~~~C~C~~n-------------------~~~CEk~C~C~~dC~nrF~ 540 (739)
T KOG1079|consen 501 YQPCDHPGPCNCGVGCPCIDN-------------------ETFCEKFCYCSPDCRNRFP 540 (739)
T ss_pred cCcccCCCCCCCCCCCccccc-------------------CcchhhcccCCHHHHhcCC
Confidence 4455554444 457888762 2346677888888888764
No 29
>PF11403 Yeast_MT: Yeast metallothionein; InterPro: IPR022710 Metallothioneins are characterised by an abundance of cysteine residues and a lack of generic secondary structure motifs. This protein functions in primary metal storage, transport and detoxification []. For the first 40 residues in the protein the polypeptide wraps around the metal by forming two large parallel loops separated by a deep cleft containing the metal cluster []. ; PDB: 1AQS_A 1AQR_A 1RJU_V 1FMY_A 1AOO_A 1AQQ_A.
Probab=25.35 E-value=45 Score=24.63 Aligned_cols=15 Identities=40% Similarity=1.424 Sum_probs=5.4
Q ss_pred CCCCCCCCCCC--CCcc
Q 006009 448 AGCDCVSGCTD--RCFC 462 (665)
Q Consensus 448 ~gC~C~~~C~~--~C~C 462 (665)
..|.|..+|.+ .|+|
T Consensus 22 kscscptgcnsddkcpc 38 (40)
T PF11403_consen 22 KSCSCPTGCNSDDKCPC 38 (40)
T ss_dssp TS-SS-TTTTSSTT--T
T ss_pred hcCCCCCCCCCCCcCCC
Confidence 34555555542 4555
No 30
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=23.49 E-value=33 Score=28.82 Aligned_cols=50 Identities=26% Similarity=0.258 Sum_probs=23.4
Q ss_pred hHHHHHhhhcCceeEEEeccccCCCCcceeeEecCeEEEEEeEeecCCCcceEEEEEEEeecCCCC
Q 006009 310 NLAMERSMHYGIEVRVIRGFRYQGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPE 375 (665)
Q Consensus 310 NlAL~~S~~~~~pVRViRg~k~~~~~~~~~yrYDGLY~V~~~w~e~g~~G~~v~kf~L~R~~gQ~~ 375 (665)
..|+...+...++=++|-|.-. -|+|. .-..++-|+=-+|-.+|+||||-
T Consensus 10 t~A~~a~l~a~~~g~~IDg~Gl-------------TykVs---~lPd~srf~N~rF~~eri~gqpl 59 (67)
T PF12218_consen 10 TAAITAALEASPVGRKIDGAGL-------------TYKVS---SLPDISRFKNARFVYERIPGQPL 59 (67)
T ss_dssp HHHHHHHHHHS-TTS-EE-TT--------------EEEES---S---GGGEES-EEEE-SSTT--E
T ss_pred HHHHHHHHhccCCCeEEecCCc-------------eEEEe---eCccHHhhccceEEEeecCCCce
Confidence 3455555555555555655321 24443 23455666666788889999995
No 31
>PRK03999 translation initiation factor IF-5A; Provisional
Probab=21.53 E-value=1.5e+02 Score=28.06 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=30.3
Q ss_pred cceeeEecC-eEEEEEeE-eecCCCcceEEEEEEEeecCCCC
Q 006009 336 SSKVYVYDG-LYKIHDCW-FDVGKSGFGVYKYKLLRIEGQPE 375 (665)
Q Consensus 336 ~~~~yrYDG-LY~V~~~w-~e~g~~G~~v~kf~L~R~~gQ~~ 375 (665)
++....||| +|+|+++- .-.|+.|....+.+|+.+..-..
T Consensus 13 kG~~i~~~g~p~~V~~~~~~kpGkhg~a~vr~k~knL~tG~~ 54 (129)
T PRK03999 13 EGSYVVIDGEPCKIVEISKSKPGKHGSAKARIVAIGIFDGQK 54 (129)
T ss_pred CCCEEEECCEEEEEEEEEeecCCCCCcEEEEEEEEECCCCCE
Confidence 466789999 99999964 45666677788999888766543
Done!