Query 006010
Match_columns 664
No_of_seqs 771 out of 3640
Neff 11.5
Searched_HMMs 46136
Date Thu Mar 28 17:03:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.1E-70 2.3E-75 602.3 56.2 551 60-660 64-650 (857)
2 PLN03218 maturation of RBCL 1; 100.0 1.8E-68 3.9E-73 571.2 70.0 540 61-636 351-916 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 4.7E-68 1E-72 568.0 67.2 515 115-661 367-906 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 1.7E-68 3.6E-73 585.1 56.7 542 61-655 135-677 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.5E-61 3.3E-66 517.5 54.6 476 81-578 85-562 (697)
6 PLN03081 pentatricopeptide (PP 100.0 3.6E-61 7.9E-66 514.5 53.0 476 117-635 86-563 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.5E-35 9.8E-40 330.5 70.2 579 60-662 308-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.6E-34 1.4E-38 321.0 70.4 577 60-662 274-864 (899)
9 PRK11447 cellulose synthase su 100.0 1.6E-26 3.5E-31 260.0 66.9 564 59-662 40-738 (1157)
10 PRK11447 cellulose synthase su 100.0 1.2E-24 2.5E-29 245.0 65.6 541 85-662 30-698 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2.3E-22 5.1E-27 215.6 60.2 547 60-662 57-704 (987)
12 PRK09782 bacteriophage N4 rece 100.0 6.5E-22 1.4E-26 212.3 62.0 521 86-662 47-670 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 4.1E-23 8.9E-28 195.9 38.3 438 121-581 51-491 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 3E-22 6.5E-27 190.2 38.2 446 84-553 49-499 (966)
15 KOG2002 TPR-containing nuclear 99.9 1.6E-20 3.6E-25 188.0 50.2 559 63-661 146-742 (1018)
16 KOG2002 TPR-containing nuclear 99.9 1.4E-19 3.1E-24 181.4 49.8 553 60-630 177-799 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 7.6E-20 1.7E-24 193.6 51.0 434 195-662 130-569 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 9.6E-20 2.1E-24 192.8 51.1 256 346-628 308-570 (615)
19 PRK11788 tetratricopeptide rep 99.9 3.8E-20 8.3E-25 186.3 35.6 300 272-580 45-354 (389)
20 PRK11788 tetratricopeptide rep 99.9 2.9E-20 6.3E-25 187.2 34.6 299 126-432 43-348 (389)
21 PRK15174 Vi polysaccharide exp 99.9 2.2E-18 4.8E-23 181.5 48.0 363 127-501 14-381 (656)
22 PRK15174 Vi polysaccharide exp 99.9 3.1E-18 6.7E-23 180.4 47.2 363 92-467 14-382 (656)
23 PRK10049 pgaA outer membrane p 99.9 2.8E-18 6.1E-23 184.9 46.3 406 80-500 12-455 (765)
24 PRK14574 hmsH outer membrane p 99.9 6E-17 1.3E-21 170.8 53.8 453 119-629 35-513 (822)
25 PRK10049 pgaA outer membrane p 99.9 1.6E-17 3.5E-22 179.0 50.8 431 115-588 12-469 (765)
26 PRK14574 hmsH outer membrane p 99.9 6.9E-17 1.5E-21 170.3 53.3 462 82-581 33-519 (822)
27 KOG2003 TPR repeat-containing 99.9 3.6E-18 7.8E-23 156.8 32.5 486 118-650 201-709 (840)
28 KOG2003 TPR repeat-containing 99.8 2.1E-17 4.6E-22 151.7 31.4 482 79-589 197-704 (840)
29 KOG2076 RNA polymerase III tra 99.8 8.2E-15 1.8E-19 146.8 51.9 566 84-662 140-893 (895)
30 KOG2076 RNA polymerase III tra 99.8 7.4E-15 1.6E-19 147.1 51.2 499 122-629 143-769 (895)
31 KOG0495 HAT repeat protein [RN 99.8 1.1E-13 2.4E-18 133.5 54.2 479 130-657 388-873 (913)
32 KOG0495 HAT repeat protein [RN 99.8 9.1E-14 2E-18 134.0 52.8 516 97-662 265-844 (913)
33 KOG1915 Cell cycle control pro 99.8 7.5E-14 1.6E-18 129.5 49.3 490 81-591 71-604 (677)
34 KOG1915 Cell cycle control pro 99.8 5.8E-14 1.3E-18 130.2 47.7 449 117-586 72-547 (677)
35 KOG4422 Uncharacterized conser 99.8 3.5E-14 7.6E-19 130.0 41.5 464 153-658 115-619 (625)
36 KOG4422 Uncharacterized conser 99.8 2.9E-14 6.4E-19 130.5 40.9 445 84-574 117-591 (625)
37 KOG1173 Anaphase-promoting com 99.7 4.8E-13 1E-17 127.3 39.1 490 82-592 15-535 (611)
38 KOG2047 mRNA splicing factor [ 99.7 2E-11 4.3E-16 118.0 50.2 520 119-656 103-715 (835)
39 KOG1155 Anaphase-promoting com 99.7 2.8E-12 6E-17 119.1 40.9 257 306-572 236-494 (559)
40 KOG3785 Uncharacterized conser 99.7 3.7E-12 8E-17 114.1 37.8 459 90-588 29-503 (557)
41 KOG1155 Anaphase-promoting com 99.7 5.1E-12 1.1E-16 117.4 39.6 369 187-572 159-535 (559)
42 KOG0547 Translocase of outer m 99.7 3.6E-13 7.7E-18 125.7 32.3 419 123-572 120-565 (606)
43 KOG1173 Anaphase-promoting com 99.7 2.5E-12 5.4E-17 122.6 37.3 497 117-663 15-517 (611)
44 KOG0547 Translocase of outer m 99.7 1.1E-12 2.4E-17 122.5 33.0 420 156-629 117-566 (606)
45 TIGR00540 hemY_coli hemY prote 99.7 4.3E-13 9.2E-18 134.3 32.1 298 309-662 96-397 (409)
46 PRK10747 putative protoheme IX 99.6 1.1E-12 2.4E-17 130.4 34.6 283 275-571 97-388 (398)
47 PF13429 TPR_15: Tetratricopep 99.6 1E-15 2.3E-20 145.4 12.2 261 372-662 13-275 (280)
48 TIGR00540 hemY_coli hemY prote 99.6 1E-12 2.2E-17 131.6 33.9 287 273-571 95-397 (409)
49 PRK10747 putative protoheme IX 99.6 1.8E-12 4E-17 128.9 35.4 252 273-535 129-389 (398)
50 KOG3785 Uncharacterized conser 99.6 1.9E-11 4.1E-16 109.6 36.7 453 127-639 31-498 (557)
51 PF13429 TPR_15: Tetratricopep 99.6 5E-15 1.1E-19 140.8 13.4 261 123-393 13-274 (280)
52 KOG2047 mRNA splicing factor [ 99.6 3.9E-09 8.4E-14 102.6 50.7 484 82-586 26-591 (835)
53 COG2956 Predicted N-acetylgluc 99.6 1.2E-11 2.7E-16 109.6 30.5 225 270-500 115-346 (389)
54 COG3071 HemY Uncharacterized e 99.6 4.7E-11 1E-15 109.5 34.4 285 240-534 97-388 (400)
55 KOG1126 DNA-binding cell divis 99.6 1.2E-12 2.7E-17 127.4 25.1 283 312-629 334-620 (638)
56 COG2956 Predicted N-acetylgluc 99.6 1.3E-11 2.8E-16 109.5 28.9 288 168-465 49-346 (389)
57 KOG4318 Bicoid mRNA stability 99.6 2.6E-11 5.7E-16 121.5 34.1 536 76-646 18-641 (1088)
58 KOG1126 DNA-binding cell divis 99.6 1E-12 2.3E-17 127.9 23.8 286 242-538 334-622 (638)
59 KOG1156 N-terminal acetyltrans 99.5 1.6E-09 3.5E-14 105.5 43.6 468 123-626 13-508 (700)
60 COG3071 HemY Uncharacterized e 99.5 7.8E-11 1.7E-15 108.1 32.6 285 275-571 97-388 (400)
61 KOG1156 N-terminal acetyltrans 99.5 1.1E-08 2.3E-13 99.9 47.0 466 85-571 9-509 (700)
62 KOG1174 Anaphase-promoting com 99.5 2.4E-08 5.1E-13 92.1 42.5 410 117-588 96-513 (564)
63 KOG4162 Predicted calmodulin-b 99.5 2.2E-08 4.7E-13 99.9 45.0 404 223-661 319-780 (799)
64 KOG2376 Signal recognition par 99.5 8.9E-09 1.9E-13 99.4 40.8 455 84-571 13-518 (652)
65 KOG4162 Predicted calmodulin-b 99.5 1.5E-09 3.2E-14 107.9 35.9 431 117-572 322-782 (799)
66 KOG1174 Anaphase-promoting com 99.4 1.8E-08 3.8E-13 92.9 39.8 397 191-628 96-499 (564)
67 PF12569 NARP1: NMDA receptor- 99.4 5.9E-09 1.3E-13 104.7 38.9 128 301-430 198-333 (517)
68 KOG2376 Signal recognition par 99.4 6.1E-08 1.3E-12 93.8 42.1 466 121-656 15-512 (652)
69 KOG1129 TPR repeat-containing 99.4 5.5E-11 1.2E-15 105.6 19.2 234 335-579 226-462 (478)
70 TIGR02521 type_IV_pilW type IV 99.4 3.1E-10 6.7E-15 105.5 25.6 199 83-288 31-229 (234)
71 KOG4318 Bicoid mRNA stability 99.4 2.6E-09 5.6E-14 107.6 32.7 83 329-414 201-283 (1088)
72 PF12569 NARP1: NMDA receptor- 99.4 4.6E-08 1E-12 98.3 41.9 293 161-465 11-333 (517)
73 PRK12370 invasion protein regu 99.4 7E-10 1.5E-14 115.6 30.4 251 132-397 275-536 (553)
74 KOG1127 TPR repeat-containing 99.4 7.7E-09 1.7E-13 105.6 35.6 181 384-571 800-994 (1238)
75 PRK12370 invasion protein regu 99.4 9.4E-10 2E-14 114.7 30.3 215 348-572 277-501 (553)
76 KOG1127 TPR repeat-containing 99.4 4.3E-08 9.3E-13 100.3 39.6 444 99-569 474-948 (1238)
77 TIGR02521 type_IV_pilW type IV 99.3 8.2E-10 1.8E-14 102.6 26.1 166 403-573 32-198 (234)
78 KOG1129 TPR repeat-containing 99.3 2.3E-10 4.9E-15 101.8 19.3 236 366-629 222-458 (478)
79 KOG0985 Vesicle coat protein c 99.3 2.3E-06 4.9E-11 88.1 45.9 339 281-662 966-1342(1666)
80 COG3063 PilF Tfp pilus assembl 99.3 7.1E-09 1.5E-13 88.2 23.7 206 405-639 38-244 (250)
81 KOG0985 Vesicle coat protein c 99.3 4.4E-06 9.6E-11 86.0 48.8 534 87-659 485-1244(1666)
82 KOG0548 Molecular co-chaperone 99.2 3.8E-07 8.3E-12 87.6 37.2 441 89-591 8-471 (539)
83 COG3063 PilF Tfp pilus assembl 99.2 5.5E-09 1.2E-13 88.9 21.7 192 439-657 37-229 (250)
84 KOG4340 Uncharacterized conser 99.2 3.6E-08 7.8E-13 86.9 26.8 314 121-462 13-335 (459)
85 KOG1840 Kinesin light chain [C 99.2 3E-09 6.6E-14 105.3 22.5 243 117-359 198-477 (508)
86 KOG3616 Selective LIM binding 99.2 9.2E-07 2E-11 87.7 38.4 313 197-569 562-875 (1636)
87 KOG1840 Kinesin light chain [C 99.2 7E-09 1.5E-13 102.8 24.4 198 442-660 246-475 (508)
88 cd05804 StaR_like StaR_like; a 99.2 1.8E-07 4E-12 92.9 34.4 200 83-291 6-215 (355)
89 KOG0548 Molecular co-chaperone 99.2 4.1E-07 8.9E-12 87.4 34.0 422 58-537 13-456 (539)
90 KOG4340 Uncharacterized conser 99.2 1.8E-07 4E-12 82.6 29.1 291 85-391 12-334 (459)
91 PF13041 PPR_2: PPR repeat fam 99.2 8.2E-11 1.8E-15 77.6 6.6 47 261-307 2-48 (50)
92 PRK11189 lipoprotein NlpI; Pro 99.2 1.6E-08 3.6E-13 96.2 24.9 218 62-292 41-266 (296)
93 PF13041 PPR_2: PPR repeat fam 99.2 8.7E-11 1.9E-15 77.4 6.4 49 225-273 1-49 (50)
94 KOG0624 dsRNA-activated protei 99.1 1.2E-06 2.5E-11 79.2 32.2 316 152-500 36-369 (504)
95 KOG3616 Selective LIM binding 99.1 4E-07 8.7E-12 90.2 31.8 308 268-623 738-1070(1636)
96 PRK11189 lipoprotein NlpI; Pro 99.1 1.2E-07 2.6E-12 90.3 28.0 119 132-255 40-160 (296)
97 cd05804 StaR_like StaR_like; a 99.1 1.3E-06 2.8E-11 86.9 35.8 204 117-326 5-215 (355)
98 KOG3617 WD40 and TPR repeat-co 99.1 6.1E-06 1.3E-10 83.2 38.7 140 128-287 738-883 (1416)
99 KOG0624 dsRNA-activated protei 99.1 5.4E-06 1.2E-10 75.1 34.6 253 343-629 166-421 (504)
100 KOG1914 mRNA cleavage and poly 99.1 1.8E-05 3.9E-10 76.3 39.2 178 382-561 346-527 (656)
101 KOG3617 WD40 and TPR repeat-co 99.1 7.9E-06 1.7E-10 82.5 38.1 212 82-324 756-994 (1416)
102 KOG1914 mRNA cleavage and poly 99.0 3.3E-05 7.1E-10 74.6 39.7 181 453-660 309-497 (656)
103 PRK04841 transcriptional regul 99.0 6.6E-06 1.4E-10 92.9 38.8 339 235-573 382-760 (903)
104 PF04733 Coatomer_E: Coatomer 99.0 5.5E-08 1.2E-12 91.0 17.9 252 90-361 8-265 (290)
105 KOG1125 TPR repeat-containing 99.0 7.2E-08 1.6E-12 93.3 18.7 259 342-656 295-563 (579)
106 KOG1125 TPR repeat-containing 98.9 1.5E-07 3.3E-12 91.1 20.6 248 307-564 295-562 (579)
107 PRK04841 transcriptional regul 98.9 9.3E-06 2E-10 91.7 38.4 374 158-536 345-760 (903)
108 PF04733 Coatomer_E: Coatomer 98.9 1E-07 2.2E-12 89.3 18.4 155 411-579 111-269 (290)
109 KOG1128 Uncharacterized conser 98.9 1.2E-06 2.6E-11 87.3 24.3 232 368-643 399-631 (777)
110 KOG2053 Mitochondrial inherita 98.9 0.00021 4.6E-09 73.5 48.2 223 92-327 18-256 (932)
111 KOG1070 rRNA processing protei 98.8 3.4E-06 7.4E-11 89.9 26.4 201 118-327 1458-1664(1710)
112 KOG1128 Uncharacterized conser 98.8 1.4E-06 3E-11 86.9 21.4 219 400-663 396-615 (777)
113 TIGR03302 OM_YfiO outer membra 98.8 5.9E-07 1.3E-11 83.2 17.6 182 472-660 33-228 (235)
114 PLN02789 farnesyltranstransfer 98.7 1.4E-05 3E-10 76.0 25.9 206 412-647 47-267 (320)
115 KOG1070 rRNA processing protei 98.7 1.1E-05 2.4E-10 86.2 27.1 207 366-580 1457-1670(1710)
116 PLN02789 farnesyltranstransfer 98.7 3.6E-05 7.8E-10 73.3 27.4 204 376-588 46-264 (320)
117 TIGR03302 OM_YfiO outer membra 98.7 3.2E-06 7E-11 78.2 20.2 187 366-572 32-231 (235)
118 PRK15179 Vi polysaccharide bio 98.6 4.4E-06 9.5E-11 87.7 21.6 143 469-640 83-227 (694)
119 PRK10370 formate-dependent nit 98.6 8.7E-06 1.9E-10 72.0 19.7 119 450-573 52-173 (198)
120 PRK10370 formate-dependent nit 98.6 7.6E-06 1.6E-10 72.4 19.3 153 444-635 23-178 (198)
121 KOG3081 Vesicle coat complex C 98.6 9E-05 2E-09 65.2 24.9 50 270-325 116-165 (299)
122 COG4783 Putative Zn-dependent 98.6 2.2E-05 4.7E-10 75.2 22.8 146 447-638 316-462 (484)
123 COG5010 TadD Flp pilus assembl 98.6 1.3E-05 2.8E-10 70.4 19.6 127 441-572 70-196 (257)
124 KOG3081 Vesicle coat complex C 98.6 5.9E-05 1.3E-09 66.3 22.9 121 234-364 115-239 (299)
125 COG5010 TadD Flp pilus assembl 98.6 1E-05 2.3E-10 71.0 18.3 159 122-288 70-228 (257)
126 PRK15359 type III secretion sy 98.6 5.2E-06 1.1E-10 69.3 15.7 118 458-585 14-131 (144)
127 PF12854 PPR_1: PPR repeat 98.5 1.2E-07 2.7E-12 55.7 4.0 31 258-288 3-33 (34)
128 PF12854 PPR_1: PPR repeat 98.5 1.5E-07 3.3E-12 55.3 3.9 32 222-253 2-33 (34)
129 KOG2053 Mitochondrial inherita 98.5 0.0022 4.7E-08 66.5 49.2 218 64-293 26-257 (932)
130 PRK14720 transcript cleavage f 98.5 3.2E-05 6.8E-10 82.2 23.8 247 366-656 30-282 (906)
131 PRK14720 transcript cleavage f 98.5 0.0001 2.2E-09 78.5 27.0 59 229-289 118-176 (906)
132 PRK15359 type III secretion sy 98.5 1.5E-05 3.3E-10 66.5 16.6 97 440-538 27-123 (144)
133 PRK15179 Vi polysaccharide bio 98.5 7.5E-05 1.6E-09 78.7 25.4 183 398-592 82-268 (694)
134 PF09976 TPR_21: Tetratricopep 98.4 8.1E-06 1.8E-10 68.6 13.9 132 509-662 14-145 (145)
135 KOG3060 Uncharacterized conser 98.4 0.00033 7.2E-09 61.3 23.4 186 381-572 26-219 (289)
136 TIGR02552 LcrH_SycD type III s 98.4 1.5E-05 3.2E-10 66.3 14.7 122 460-588 6-127 (135)
137 COG4783 Putative Zn-dependent 98.4 0.00012 2.7E-09 70.2 22.0 149 117-291 305-454 (484)
138 KOG3060 Uncharacterized conser 98.3 0.00078 1.7E-08 59.0 21.9 189 169-361 27-220 (289)
139 TIGR02552 LcrH_SycD type III s 98.2 5.1E-05 1.1E-09 63.1 13.7 96 84-182 18-113 (135)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00014 3E-09 70.7 16.1 122 123-254 174-295 (395)
141 PF09976 TPR_21: Tetratricopep 98.1 0.00029 6.2E-09 59.2 15.5 117 131-252 24-143 (145)
142 KOG0550 Molecular chaperone (D 98.0 0.00091 2E-08 62.8 18.8 246 302-572 54-315 (486)
143 KOG0553 TPR repeat-containing 98.0 8.8E-05 1.9E-09 66.7 11.7 112 480-597 89-200 (304)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00026 5.7E-09 68.9 15.9 121 372-498 174-294 (395)
145 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00029 6.3E-09 56.9 13.6 102 474-579 4-109 (119)
146 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.0003 6.6E-09 56.8 13.2 99 508-629 3-105 (119)
147 TIGR00756 PPR pentatricopeptid 97.9 2.4E-05 5.2E-10 46.8 4.4 33 546-578 2-34 (35)
148 PRK02603 photosystem I assembl 97.9 0.00066 1.4E-08 59.0 14.6 105 70-176 22-128 (172)
149 KOG2041 WD40 repeat protein [G 97.9 0.042 9.2E-07 55.6 29.4 54 477-530 1026-1080(1189)
150 PLN03088 SGT1, suppressor of 97.9 0.00042 9.1E-09 67.8 14.7 89 445-535 10-98 (356)
151 COG4700 Uncharacterized protei 97.8 0.00097 2.1E-08 55.3 13.9 122 120-246 91-212 (251)
152 TIGR00756 PPR pentatricopeptid 97.8 3.1E-05 6.7E-10 46.4 4.2 33 264-296 2-34 (35)
153 PF12688 TPR_5: Tetratrico pep 97.8 0.0011 2.4E-08 52.4 14.0 112 85-203 3-117 (120)
154 KOG2041 WD40 repeat protein [G 97.8 0.05 1.1E-06 55.1 29.5 151 409-571 930-1084(1189)
155 PF12895 Apc3: Anaphase-promot 97.8 3.1E-05 6.8E-10 57.8 4.7 49 520-569 2-50 (84)
156 PF05843 Suf: Suppressor of fo 97.8 0.00058 1.3E-08 64.4 14.3 146 439-589 3-150 (280)
157 PRK10866 outer membrane biogen 97.8 0.0068 1.5E-07 55.6 20.5 74 82-155 31-106 (243)
158 CHL00033 ycf3 photosystem I as 97.8 0.00047 1E-08 59.7 12.2 95 82-178 34-137 (168)
159 PF13812 PPR_3: Pentatricopept 97.8 4.6E-05 1E-09 45.2 4.1 33 545-577 2-34 (34)
160 PF13812 PPR_3: Pentatricopept 97.8 5.4E-05 1.2E-09 44.9 4.4 32 264-295 3-34 (34)
161 KOG0550 Molecular chaperone (D 97.8 0.011 2.4E-07 55.8 21.2 85 482-572 259-349 (486)
162 PRK15363 pathogenicity island 97.8 0.0032 6.9E-08 51.8 15.6 93 476-572 39-131 (157)
163 COG4700 Uncharacterized protei 97.7 0.0093 2E-07 49.7 18.1 145 469-639 86-231 (251)
164 cd00189 TPR Tetratricopeptide 97.7 0.00058 1.3E-08 52.4 11.3 94 475-572 3-96 (100)
165 cd00189 TPR Tetratricopeptide 97.7 0.00055 1.2E-08 52.5 10.9 93 86-181 3-95 (100)
166 PLN03088 SGT1, suppressor of 97.7 0.00098 2.1E-08 65.3 14.6 92 88-182 7-98 (356)
167 PF14938 SNAP: Soluble NSF att 97.7 0.008 1.7E-07 57.0 20.2 128 443-571 120-264 (282)
168 PRK15363 pathogenicity island 97.7 0.00099 2.1E-08 54.7 11.8 94 121-220 38-131 (157)
169 PRK10866 outer membrane biogen 97.7 0.011 2.3E-07 54.4 20.0 186 366-571 31-239 (243)
170 PF10037 MRP-S27: Mitochondria 97.7 0.001 2.2E-08 65.1 13.8 120 191-310 65-186 (429)
171 PF14938 SNAP: Soluble NSF att 97.6 0.004 8.7E-08 59.0 17.4 113 233-361 100-225 (282)
172 PRK02603 photosystem I assembl 97.6 0.0024 5.3E-08 55.4 14.7 85 156-243 37-122 (172)
173 PF12895 Apc3: Anaphase-promot 97.6 0.00011 2.4E-09 54.8 5.5 79 97-178 3-82 (84)
174 CHL00033 ycf3 photosystem I as 97.6 0.00065 1.4E-08 58.8 11.0 104 507-626 35-139 (168)
175 PF08579 RPM2: Mitochondrial r 97.6 0.0013 2.8E-08 49.9 10.6 76 232-307 30-114 (120)
176 COG4235 Cytochrome c biogenesi 97.6 0.0033 7.1E-08 57.3 15.3 121 461-588 146-269 (287)
177 KOG0553 TPR repeat-containing 97.6 0.00079 1.7E-08 60.8 11.1 99 91-197 89-187 (304)
178 PF07079 DUF1347: Protein of u 97.6 0.076 1.6E-06 51.2 44.3 462 92-588 15-534 (549)
179 PF10037 MRP-S27: Mitochondria 97.6 0.0013 2.9E-08 64.3 13.3 120 259-378 63-184 (429)
180 PRK10153 DNA-binding transcrip 97.6 0.0083 1.8E-07 61.6 19.6 71 506-582 419-489 (517)
181 PF05843 Suf: Suppressor of fo 97.6 0.0012 2.7E-08 62.1 12.8 128 121-255 4-135 (280)
182 PF13525 YfiO: Outer membrane 97.6 0.013 2.7E-07 52.4 18.4 64 84-147 6-71 (203)
183 PF13432 TPR_16: Tetratricopep 97.5 0.00038 8.3E-09 48.8 6.9 57 513-572 3-59 (65)
184 PF07079 DUF1347: Protein of u 97.5 0.099 2.2E-06 50.4 43.1 201 438-660 299-520 (549)
185 PF13525 YfiO: Outer membrane 97.5 0.0097 2.1E-07 53.2 17.1 182 117-317 4-198 (203)
186 PF13414 TPR_11: TPR repeat; P 97.5 0.00043 9.3E-09 49.3 6.9 63 507-572 3-66 (69)
187 PF14559 TPR_19: Tetratricopep 97.5 0.00041 8.8E-09 49.2 6.4 61 519-584 3-63 (68)
188 PF08579 RPM2: Mitochondrial r 97.5 0.0018 3.8E-08 49.2 9.7 78 267-344 30-116 (120)
189 COG4235 Cytochrome c biogenesi 97.5 0.0056 1.2E-07 55.8 14.7 121 495-643 145-268 (287)
190 PF01535 PPR: PPR repeat; Int 97.5 0.00016 3.4E-09 41.7 3.3 28 264-291 2-29 (31)
191 PF01535 PPR: PPR repeat; Int 97.5 0.00017 3.6E-09 41.6 3.3 29 546-574 2-30 (31)
192 PF12688 TPR_5: Tetratrico pep 97.4 0.0048 1.1E-07 48.9 12.5 93 479-571 8-102 (120)
193 PRK10803 tol-pal system protei 97.4 0.0025 5.4E-08 58.9 12.2 103 474-580 145-251 (263)
194 PF13432 TPR_16: Tetratricopep 97.4 0.00078 1.7E-08 47.2 7.0 57 124-182 3-59 (65)
195 PRK10153 DNA-binding transcrip 97.4 0.0061 1.3E-07 62.5 15.7 146 112-265 331-489 (517)
196 PF14559 TPR_19: Tetratricopep 97.4 0.00089 1.9E-08 47.5 7.0 51 130-182 3-53 (68)
197 PRK10803 tol-pal system protei 97.3 0.0087 1.9E-07 55.3 14.5 98 85-182 145-245 (263)
198 PF06239 ECSIT: Evolutionarily 97.3 0.0056 1.2E-07 52.9 11.8 50 190-239 45-99 (228)
199 PF13414 TPR_11: TPR repeat; P 97.2 0.0018 3.9E-08 46.0 7.1 62 119-182 4-66 (69)
200 KOG1130 Predicted G-alpha GTPa 97.2 0.0073 1.6E-07 56.9 12.3 131 404-534 197-342 (639)
201 PF06239 ECSIT: Evolutionarily 97.2 0.01 2.2E-07 51.4 12.2 104 224-346 44-152 (228)
202 KOG1258 mRNA processing protei 97.1 0.35 7.6E-06 48.8 34.2 137 81-221 43-180 (577)
203 KOG2114 Vacuolar assembly/sort 97.1 0.45 9.8E-06 49.8 26.7 184 82-288 333-516 (933)
204 COG4105 ComL DNA uptake lipopr 97.1 0.17 3.8E-06 45.3 19.7 74 82-155 33-108 (254)
205 KOG2280 Vacuolar assembly/sort 97.1 0.44 9.5E-06 49.3 26.4 346 186-571 426-797 (829)
206 KOG1130 Predicted G-alpha GTPa 97.1 0.006 1.3E-07 57.4 10.5 286 271-572 26-343 (639)
207 KOG1538 Uncharacterized conser 97.1 0.069 1.5E-06 53.6 18.1 85 436-533 746-843 (1081)
208 COG3898 Uncharacterized membra 97.0 0.3 6.6E-06 46.3 30.5 60 404-465 331-391 (531)
209 PF13371 TPR_9: Tetratricopept 97.0 0.0044 9.6E-08 44.6 7.9 62 515-581 3-64 (73)
210 COG3898 Uncharacterized membra 97.0 0.32 6.9E-06 46.1 29.9 312 62-400 68-396 (531)
211 COG1729 Uncharacterized protei 97.0 0.013 2.7E-07 52.9 11.6 96 87-182 145-243 (262)
212 KOG1941 Acetylcholine receptor 97.0 0.056 1.2E-06 50.4 15.5 138 509-662 124-273 (518)
213 PF03704 BTAD: Bacterial trans 96.9 0.019 4.1E-07 48.2 12.1 72 509-583 64-140 (146)
214 KOG2396 HAT (Half-A-TPR) repea 96.9 0.46 1E-05 46.7 40.0 102 540-662 455-557 (568)
215 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.43 9.4E-06 46.1 35.5 145 437-589 397-545 (660)
216 KOG1258 mRNA processing protei 96.9 0.63 1.4E-05 47.0 33.6 190 436-649 296-489 (577)
217 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.6 1.3E-05 45.2 39.1 457 68-555 30-546 (660)
218 PF10300 DUF3808: Protein of u 96.7 0.093 2E-06 53.5 17.2 164 442-628 193-375 (468)
219 PF13371 TPR_9: Tetratricopept 96.7 0.012 2.5E-07 42.4 7.8 54 127-182 4-57 (73)
220 KOG2796 Uncharacterized conser 96.7 0.42 9E-06 42.8 21.4 131 231-362 181-316 (366)
221 PF03704 BTAD: Bacterial trans 96.7 0.15 3.1E-06 42.9 15.6 57 231-288 66-122 (146)
222 PRK11906 transcriptional regul 96.7 0.1 2.2E-06 51.2 15.9 122 452-579 273-405 (458)
223 KOG2796 Uncharacterized conser 96.7 0.43 9.4E-06 42.7 22.9 140 441-585 181-325 (366)
224 PF13512 TPR_18: Tetratricopep 96.7 0.063 1.4E-06 43.5 12.1 74 81-154 8-83 (142)
225 KOG4555 TPR repeat-containing 96.6 0.043 9.4E-07 42.9 10.5 95 126-222 51-145 (175)
226 PF13424 TPR_12: Tetratricopep 96.6 0.0069 1.5E-07 44.3 6.0 67 545-628 6-74 (78)
227 PRK15331 chaperone protein Sic 96.6 0.03 6.6E-07 46.4 10.0 95 121-221 40-134 (165)
228 PF13424 TPR_12: Tetratricopep 96.5 0.0079 1.7E-07 44.0 6.0 65 508-572 6-74 (78)
229 COG1729 Uncharacterized protei 96.5 0.036 7.9E-07 50.0 10.9 101 509-629 144-244 (262)
230 KOG1538 Uncharacterized conser 96.5 0.46 1E-05 48.1 18.8 112 479-626 710-830 (1081)
231 PF13281 DUF4071: Domain of un 96.4 0.98 2.1E-05 43.8 21.7 31 543-573 304-334 (374)
232 KOG0543 FKBP-type peptidyl-pro 96.4 0.045 9.8E-07 52.1 11.3 78 508-590 258-335 (397)
233 PF04053 Coatomer_WDAD: Coatom 96.4 0.22 4.8E-06 50.0 16.7 131 155-321 296-426 (443)
234 KOG2114 Vacuolar assembly/sort 96.4 1.7 3.8E-05 45.8 26.1 178 121-323 337-516 (933)
235 COG3118 Thioredoxin domain-con 96.4 0.41 8.9E-06 43.9 16.5 158 480-663 142-300 (304)
236 PF04840 Vps16_C: Vps16, C-ter 96.3 1.1 2.4E-05 43.0 30.3 82 476-569 181-262 (319)
237 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.046 1E-06 53.4 11.0 66 81-146 73-140 (453)
238 PF10300 DUF3808: Protein of u 96.3 0.22 4.8E-06 50.9 16.4 163 120-289 190-374 (468)
239 KOG0543 FKBP-type peptidyl-pro 96.2 0.093 2E-06 50.1 12.3 96 473-572 258-354 (397)
240 PRK15331 chaperone protein Sic 96.2 0.079 1.7E-06 44.0 10.2 90 479-572 44-133 (165)
241 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.099 2.1E-06 51.2 12.2 65 115-182 72-140 (453)
242 KOG4555 TPR repeat-containing 96.1 0.13 2.8E-06 40.4 10.3 53 517-572 53-105 (175)
243 COG3118 Thioredoxin domain-con 96.0 1.1 2.4E-05 41.2 17.6 28 261-288 235-262 (304)
244 PF04840 Vps16_C: Vps16, C-ter 95.9 1.7 3.6E-05 41.7 29.8 80 408-497 183-262 (319)
245 PF13512 TPR_18: Tetratricopep 95.9 0.39 8.4E-06 39.1 12.6 88 115-205 7-95 (142)
246 KOG2280 Vacuolar assembly/sort 95.8 2.8 6.1E-05 43.7 35.9 110 508-659 685-794 (829)
247 KOG1585 Protein required for f 95.8 1.2 2.7E-05 39.5 17.6 87 155-254 32-118 (308)
248 PF12921 ATP13: Mitochondrial 95.8 0.19 4.1E-06 40.4 10.8 47 259-305 49-96 (126)
249 PF12921 ATP13: Mitochondrial 95.8 0.44 9.5E-06 38.3 12.8 53 537-589 45-98 (126)
250 KOG1941 Acetylcholine receptor 95.7 0.65 1.4E-05 43.6 15.0 193 380-572 19-234 (518)
251 COG4105 ComL DNA uptake lipopr 95.6 1.7 3.7E-05 39.2 21.8 55 272-326 44-100 (254)
252 PRK11906 transcriptional regul 95.5 1.3 2.8E-05 43.9 17.1 150 417-571 273-434 (458)
253 KOG2610 Uncharacterized conser 95.5 0.46 9.9E-06 44.1 12.9 113 131-250 116-232 (491)
254 PF08631 SPO22: Meiosis protei 95.4 2.4 5.2E-05 40.1 24.5 172 438-627 85-273 (278)
255 PF04184 ST7: ST7 protein; In 95.4 2.2 4.9E-05 42.3 18.2 61 511-572 263-323 (539)
256 COG2976 Uncharacterized protei 95.4 0.51 1.1E-05 40.3 12.2 133 472-629 54-188 (207)
257 COG0457 NrfG FOG: TPR repeat [ 95.4 2.1 4.7E-05 39.1 28.1 222 380-629 36-265 (291)
258 PF13281 DUF4071: Domain of un 95.4 2.9 6.4E-05 40.6 23.2 100 156-255 143-254 (374)
259 PF04053 Coatomer_WDAD: Coatom 95.3 0.77 1.7E-05 46.3 15.6 161 90-288 268-428 (443)
260 PF13428 TPR_14: Tetratricopep 95.1 0.072 1.6E-06 33.5 5.1 30 509-538 3-32 (44)
261 PF13428 TPR_14: Tetratricopep 95.0 0.083 1.8E-06 33.2 5.2 39 120-160 3-41 (44)
262 COG4649 Uncharacterized protei 94.9 1.9 4.1E-05 36.1 14.1 50 240-289 145-194 (221)
263 COG4649 Uncharacterized protei 94.9 0.74 1.6E-05 38.4 11.3 125 482-629 68-196 (221)
264 KOG2610 Uncharacterized conser 94.8 2.6 5.7E-05 39.4 15.8 154 164-323 113-273 (491)
265 smart00299 CLH Clathrin heavy 94.7 2.1 4.6E-05 35.4 14.8 124 88-238 12-136 (140)
266 PF08631 SPO22: Meiosis protei 94.5 4.4 9.5E-05 38.3 25.6 164 404-571 86-273 (278)
267 COG4785 NlpI Lipoprotein NlpI, 94.5 1.9 4.1E-05 37.6 13.2 29 263-291 238-266 (297)
268 smart00299 CLH Clathrin heavy 94.4 2.4 5.2E-05 35.1 15.1 125 406-555 11-136 (140)
269 PF04184 ST7: ST7 protein; In 94.2 6.7 0.00015 39.2 18.0 62 369-430 261-323 (539)
270 PF09205 DUF1955: Domain of un 94.2 2.3 5E-05 33.8 14.3 140 129-294 13-152 (161)
271 KOG1920 IkappaB kinase complex 94.1 12 0.00026 41.7 29.3 134 372-533 913-1052(1265)
272 PF13170 DUF4003: Protein of u 93.9 4.5 9.7E-05 38.4 16.0 128 137-267 81-222 (297)
273 KOG3941 Intermediate in Toll s 93.6 0.73 1.6E-05 41.7 9.6 104 225-347 65-173 (406)
274 KOG1585 Protein required for f 93.3 5.8 0.00013 35.5 17.7 211 79-320 27-250 (308)
275 KOG3941 Intermediate in Toll s 93.2 0.58 1.3E-05 42.3 8.3 69 208-276 88-172 (406)
276 PF13176 TPR_7: Tetratricopept 93.1 0.12 2.7E-06 30.6 2.9 25 638-662 2-26 (36)
277 PF04097 Nic96: Nup93/Nic96; 93.1 13 0.00027 39.9 19.7 42 233-275 117-158 (613)
278 COG3629 DnrI DNA-binding trans 93.0 1.2 2.6E-05 41.3 10.4 77 509-588 155-236 (280)
279 KOG2396 HAT (Half-A-TPR) repea 93.0 11 0.00023 37.8 38.3 91 67-162 91-182 (568)
280 PF09205 DUF1955: Domain of un 93.0 3.9 8.4E-05 32.6 15.8 140 413-576 13-152 (161)
281 KOG4642 Chaperone-dependent E3 92.8 2.1 4.5E-05 38.0 10.8 62 521-588 24-86 (284)
282 PF10602 RPN7: 26S proteasome 92.7 1.3 2.7E-05 38.4 9.8 103 508-628 37-141 (177)
283 KOG1920 IkappaB kinase complex 92.6 20 0.00044 40.0 28.2 110 369-498 941-1052(1265)
284 PF06552 TOM20_plant: Plant sp 92.6 2.6 5.6E-05 35.8 10.8 62 523-589 51-123 (186)
285 PF13431 TPR_17: Tetratricopep 92.5 0.15 3.2E-06 29.8 2.6 22 543-564 12-33 (34)
286 PF10602 RPN7: 26S proteasome 92.5 1.9 4.1E-05 37.3 10.6 101 118-219 36-140 (177)
287 PF13176 TPR_7: Tetratricopept 92.1 0.37 8.1E-06 28.6 4.1 26 156-181 1-26 (36)
288 COG0457 NrfG FOG: TPR repeat [ 91.9 9.5 0.00021 34.6 32.1 199 333-535 60-264 (291)
289 PF00515 TPR_1: Tetratricopept 91.8 0.51 1.1E-05 27.4 4.5 25 510-534 4-28 (34)
290 PF00515 TPR_1: Tetratricopept 91.7 0.44 9.6E-06 27.6 4.1 32 545-578 2-33 (34)
291 PF11207 DUF2989: Protein of u 91.7 1.9 4.2E-05 37.4 9.3 76 488-564 122-198 (203)
292 COG3629 DnrI DNA-binding trans 91.6 2.2 4.7E-05 39.6 10.3 71 440-511 156-231 (280)
293 COG4785 NlpI Lipoprotein NlpI, 91.3 9.7 0.00021 33.4 14.0 183 128-327 75-267 (297)
294 COG1747 Uncharacterized N-term 90.7 20 0.00043 36.0 23.8 184 434-646 63-250 (711)
295 PF07719 TPR_2: Tetratricopept 90.6 0.79 1.7E-05 26.5 4.5 25 510-534 4-28 (34)
296 KOG1550 Extracellular protein 90.3 27 0.00058 37.0 25.2 178 208-397 228-427 (552)
297 PF07719 TPR_2: Tetratricopept 90.3 0.65 1.4E-05 26.8 4.0 32 545-578 2-33 (34)
298 KOG1550 Extracellular protein 90.0 29 0.00062 36.7 25.8 48 522-574 454-505 (552)
299 PF07035 Mic1: Colon cancer-as 89.6 12 0.00026 31.8 14.7 28 217-244 19-46 (167)
300 PF07035 Mic1: Colon cancer-as 89.5 12 0.00026 31.8 15.6 28 287-314 19-46 (167)
301 KOG0276 Vesicle coat complex C 89.5 4.5 9.8E-05 41.1 10.9 44 239-288 649-692 (794)
302 PF10345 Cohesin_load: Cohesin 89.5 34 0.00073 36.8 42.4 184 137-324 40-252 (608)
303 PF13431 TPR_17: Tetratricopep 89.4 0.62 1.3E-05 27.2 3.2 24 151-174 10-33 (34)
304 PF00637 Clathrin: Region in C 89.4 0.046 9.9E-07 45.7 -2.3 83 479-570 14-96 (143)
305 KOG4234 TPR repeat-containing 89.4 4 8.6E-05 35.2 9.0 93 512-629 100-197 (271)
306 KOG1464 COP9 signalosome, subu 88.8 18 0.0004 32.9 17.1 173 362-534 21-218 (440)
307 COG2976 Uncharacterized protei 88.7 15 0.00033 31.8 14.2 129 437-574 54-189 (207)
308 PF06552 TOM20_plant: Plant sp 88.6 4.6 9.9E-05 34.4 8.9 109 99-221 7-136 (186)
309 PF10345 Cohesin_load: Cohesin 88.4 40 0.00087 36.3 42.6 194 448-660 372-602 (608)
310 KOG2471 TPR repeat-containing 88.3 14 0.0003 36.8 12.9 122 515-648 248-382 (696)
311 COG1747 Uncharacterized N-term 88.2 31 0.00067 34.8 25.8 60 299-361 68-127 (711)
312 PF00637 Clathrin: Region in C 88.1 0.017 3.7E-07 48.3 -5.8 128 89-242 13-140 (143)
313 PF13170 DUF4003: Protein of u 88.0 25 0.00054 33.5 19.7 22 315-336 80-101 (297)
314 KOG2066 Vacuolar assembly/sort 88.0 41 0.00088 35.9 28.6 73 162-243 364-439 (846)
315 PF09613 HrpB1_HrpK: Bacterial 88.0 15 0.00032 30.8 13.5 57 89-146 16-72 (160)
316 KOG4570 Uncharacterized conser 87.9 7.8 0.00017 36.1 10.5 101 327-431 59-164 (418)
317 PF09613 HrpB1_HrpK: Bacterial 87.9 15 0.00033 30.8 12.8 52 129-182 21-72 (160)
318 PF13174 TPR_6: Tetratricopept 87.6 1.2 2.5E-05 25.4 3.7 28 120-147 2-29 (33)
319 KOG4648 Uncharacterized conser 87.6 2.9 6.3E-05 39.1 7.8 91 444-536 104-194 (536)
320 PF07575 Nucleopor_Nup85: Nup8 87.4 43 0.00094 35.6 20.3 93 333-429 373-465 (566)
321 KOG0276 Vesicle coat complex C 87.4 13 0.00028 38.1 12.4 152 93-288 596-747 (794)
322 PF11207 DUF2989: Protein of u 87.3 7.6 0.00016 33.9 9.6 78 165-247 118-198 (203)
323 COG2909 MalT ATP-dependent tra 86.7 52 0.0011 35.8 27.6 227 343-569 426-684 (894)
324 PF02259 FAT: FAT domain; Int 86.2 36 0.00079 33.5 23.5 65 366-430 145-212 (352)
325 KOG4570 Uncharacterized conser 85.4 2.9 6.3E-05 38.7 6.5 95 117-219 63-162 (418)
326 KOG4234 TPR repeat-containing 85.4 12 0.00027 32.3 9.7 88 128-221 105-197 (271)
327 COG2909 MalT ATP-dependent tra 84.7 66 0.0014 35.1 26.9 50 240-289 471-524 (894)
328 PF13181 TPR_8: Tetratricopept 84.6 1.5 3.3E-05 25.2 3.2 26 547-572 4-29 (34)
329 PF13174 TPR_6: Tetratricopept 84.2 0.92 2E-05 25.9 2.1 25 605-629 5-29 (33)
330 PF13374 TPR_10: Tetratricopep 84.2 2.7 5.9E-05 25.5 4.4 28 155-182 3-30 (42)
331 COG3947 Response regulator con 84.0 36 0.00079 31.6 16.4 70 509-581 281-355 (361)
332 KOG2066 Vacuolar assembly/sort 83.9 66 0.0014 34.5 27.9 102 199-309 363-467 (846)
333 PF13929 mRNA_stabil: mRNA sta 83.7 38 0.00083 31.6 16.3 117 133-251 143-262 (292)
334 PF13181 TPR_8: Tetratricopept 83.3 2.7 5.8E-05 24.2 3.8 27 156-182 3-29 (34)
335 PF13374 TPR_10: Tetratricopep 82.7 3.1 6.8E-05 25.3 4.2 28 545-572 3-30 (42)
336 cd00923 Cyt_c_Oxidase_Va Cytoc 82.3 8.6 0.00019 28.8 6.6 45 489-533 24-68 (103)
337 PF08424 NRDE-2: NRDE-2, neces 82.3 51 0.0011 32.0 16.8 122 455-578 49-189 (321)
338 KOG4648 Uncharacterized conser 82.2 7.8 0.00017 36.5 7.9 89 91-182 105-193 (536)
339 TIGR03504 FimV_Cterm FimV C-te 82.2 2.2 4.8E-05 26.6 3.1 26 605-630 4-29 (44)
340 KOG2063 Vacuolar assembly/sort 82.0 66 0.0014 35.6 15.8 61 86-146 310-374 (877)
341 PRK09687 putative lyase; Provi 81.8 48 0.001 31.4 28.2 201 366-589 67-277 (280)
342 cd00923 Cyt_c_Oxidase_Va Cytoc 81.7 12 0.00026 28.1 7.1 65 522-589 22-86 (103)
343 COG4455 ImpE Protein of avirul 81.7 11 0.00024 33.2 8.1 75 440-515 4-80 (273)
344 PF04097 Nic96: Nup93/Nic96; 81.0 85 0.0018 33.8 23.1 61 194-256 114-181 (613)
345 PF07575 Nucleopor_Nup85: Nup8 80.3 87 0.0019 33.4 18.7 34 555-588 506-539 (566)
346 PF07721 TPR_4: Tetratricopept 80.2 2.4 5.1E-05 22.8 2.5 21 639-659 5-25 (26)
347 COG4455 ImpE Protein of avirul 80.1 9.1 0.0002 33.7 7.1 66 509-579 3-68 (273)
348 TIGR02508 type_III_yscG type I 80.1 23 0.00051 26.7 8.7 77 98-182 20-96 (115)
349 PF02284 COX5A: Cytochrome c o 80.0 24 0.00052 26.8 9.3 61 525-588 28-88 (108)
350 TIGR02561 HrpB1_HrpK type III 79.8 33 0.00072 28.3 12.0 54 92-146 19-72 (153)
351 KOG1586 Protein required for f 79.7 46 0.001 29.9 17.7 16 129-144 25-40 (288)
352 KOG3364 Membrane protein invol 79.1 19 0.00042 29.0 8.0 68 80-147 29-100 (149)
353 KOG0687 26S proteasome regulat 78.9 60 0.0013 30.8 13.6 98 546-663 106-209 (393)
354 KOG0403 Neoplastic transformat 78.8 72 0.0016 31.7 19.1 55 478-533 515-569 (645)
355 PF07163 Pex26: Pex26 protein; 78.7 56 0.0012 30.3 12.8 124 88-215 40-181 (309)
356 TIGR02561 HrpB1_HrpK type III 78.7 36 0.00079 28.1 11.9 51 130-182 22-72 (153)
357 PF02259 FAT: FAT domain; Int 78.0 73 0.0016 31.3 25.2 65 401-465 145-212 (352)
358 PRK11619 lytic murein transgly 77.4 1.1E+02 0.0024 33.1 40.0 47 608-657 415-461 (644)
359 KOG2659 LisH motif-containing 77.0 20 0.00042 32.0 8.4 22 550-571 70-91 (228)
360 PF08424 NRDE-2: NRDE-2, neces 76.8 76 0.0016 30.8 19.0 126 488-631 47-185 (321)
361 PF07163 Pex26: Pex26 protein; 76.1 34 0.00074 31.6 9.8 90 87-177 87-181 (309)
362 PF10579 Rapsyn_N: Rapsyn N-te 75.8 8.7 0.00019 27.5 4.8 51 610-660 16-68 (80)
363 PF04910 Tcf25: Transcriptiona 75.5 88 0.0019 30.9 17.4 57 552-628 111-167 (360)
364 PF02284 COX5A: Cytochrome c o 75.4 34 0.00073 26.1 9.3 47 245-291 28-74 (108)
365 KOG4642 Chaperone-dependent E3 75.2 9.1 0.0002 34.2 5.9 102 554-657 20-139 (284)
366 KOG2471 TPR repeat-containing 74.6 94 0.002 31.4 12.9 39 205-243 30-68 (696)
367 PRK10941 hypothetical protein; 74.3 35 0.00075 31.9 9.9 66 89-155 187-252 (269)
368 KOG4521 Nuclear pore complex, 73.6 1.7E+02 0.0037 33.3 16.5 119 123-243 925-1070(1480)
369 KOG3364 Membrane protein invol 73.4 48 0.001 26.9 10.2 76 504-582 29-107 (149)
370 PF10579 Rapsyn_N: Rapsyn N-te 73.2 14 0.0003 26.5 5.4 46 484-529 18-65 (80)
371 PRK09687 putative lyase; Provi 73.2 85 0.0018 29.7 27.9 22 478-500 241-262 (280)
372 PRK11619 lytic murein transgly 72.8 1.5E+02 0.0032 32.2 42.5 409 89-532 39-464 (644)
373 PF09986 DUF2225: Uncharacteri 72.8 72 0.0016 28.7 11.3 67 509-575 120-196 (214)
374 TIGR03504 FimV_Cterm FimV C-te 71.8 10 0.00022 23.7 4.0 21 513-533 5-25 (44)
375 PRK15180 Vi polysaccharide bio 71.6 1.2E+02 0.0025 30.6 28.0 26 610-635 786-811 (831)
376 PF13929 mRNA_stabil: mRNA sta 71.0 93 0.002 29.2 19.4 115 243-357 144-263 (292)
377 PF14853 Fis1_TPR_C: Fis1 C-te 70.7 25 0.00055 23.1 5.9 37 550-588 7-43 (53)
378 PF09477 Type_III_YscG: Bacter 70.7 41 0.00089 25.9 7.5 80 95-182 18-97 (116)
379 KOG0128 RNA-binding protein SA 70.5 1.7E+02 0.0036 31.9 32.4 203 82-291 112-341 (881)
380 KOG4507 Uncharacterized conser 70.0 18 0.00038 37.0 7.2 97 121-221 215-312 (886)
381 KOG0376 Serine-threonine phosp 69.7 9.2 0.0002 38.0 5.2 102 482-590 14-116 (476)
382 smart00028 TPR Tetratricopepti 69.4 9.1 0.0002 20.8 3.5 25 547-571 4-28 (34)
383 KOG0686 COP9 signalosome, subu 69.1 1.2E+02 0.0027 29.8 14.0 94 155-251 151-253 (466)
384 PF09986 DUF2225: Uncharacteri 68.8 26 0.00057 31.4 7.7 59 605-663 123-193 (214)
385 COG3947 Response regulator con 68.2 1.1E+02 0.0023 28.8 17.1 61 547-629 282-342 (361)
386 COG5187 RPN7 26S proteasome re 67.6 1.1E+02 0.0023 28.6 11.4 69 508-576 116-187 (412)
387 PF14561 TPR_20: Tetratricopep 67.3 50 0.0011 24.7 8.8 53 117-169 21-73 (90)
388 PF12862 Apc5: Anaphase-promot 67.3 35 0.00077 25.7 7.1 55 93-147 8-70 (94)
389 KOG0686 COP9 signalosome, subu 66.5 1.4E+02 0.003 29.5 15.1 163 119-290 151-332 (466)
390 COG5159 RPN6 26S proteasome re 65.8 1.2E+02 0.0025 28.3 17.8 19 610-628 216-234 (421)
391 COG0790 FOG: TPR repeat, SEL1 65.5 1.3E+02 0.0028 28.7 23.4 123 452-583 128-276 (292)
392 COG0790 FOG: TPR repeat, SEL1 64.8 1.3E+02 0.0028 28.6 24.1 45 315-362 173-221 (292)
393 COG4976 Predicted methyltransf 64.4 56 0.0012 29.3 8.3 49 484-534 7-56 (287)
394 KOG4279 Serine/threonine prote 63.7 2.2E+02 0.0047 30.7 14.9 44 422-465 183-229 (1226)
395 PF14561 TPR_20: Tetratricopep 63.5 22 0.00047 26.6 5.1 58 606-663 28-86 (90)
396 PF14853 Fis1_TPR_C: Fis1 C-te 63.4 17 0.00037 23.9 4.0 35 605-641 6-40 (53)
397 PHA02537 M terminase endonucle 61.6 80 0.0017 28.6 9.1 103 517-629 93-207 (230)
398 PRK12798 chemotaxis protein; R 61.6 1.8E+02 0.0039 29.0 21.5 151 415-572 125-285 (421)
399 KOG0991 Replication factor C, 61.4 1.3E+02 0.0027 27.3 13.1 47 540-588 235-281 (333)
400 KOG1586 Protein required for f 59.6 1.4E+02 0.003 27.1 20.4 25 269-293 161-185 (288)
401 COG5108 RPO41 Mitochondrial DN 59.6 54 0.0012 34.3 8.5 72 477-553 33-112 (1117)
402 KOG2034 Vacuolar sorting prote 59.1 2.8E+02 0.0062 30.6 26.6 70 89-171 364-433 (911)
403 PRK10941 hypothetical protein; 58.5 1.5E+02 0.0032 27.8 10.7 75 511-588 185-260 (269)
404 COG4715 Uncharacterized conser 57.8 2.4E+02 0.0052 29.3 21.4 249 369-643 305-565 (587)
405 KOG4507 Uncharacterized conser 57.2 52 0.0011 33.9 7.8 117 84-203 213-331 (886)
406 PF13934 ELYS: Nuclear pore co 56.1 1.6E+02 0.0035 26.8 14.5 92 484-588 90-181 (226)
407 smart00386 HAT HAT (Half-A-TPR 55.8 22 0.00048 19.7 3.4 30 614-644 1-30 (33)
408 PRK13341 recombination factor 55.3 3.3E+02 0.0071 30.1 15.1 122 453-588 170-302 (725)
409 PF12862 Apc5: Anaphase-promot 55.3 46 0.00099 25.1 5.8 17 202-218 51-67 (94)
410 KOG0545 Aryl-hydrocarbon recep 55.1 1.7E+02 0.0036 26.7 10.6 27 84-110 179-205 (329)
411 cd08819 CARD_MDA5_2 Caspase ac 55.1 84 0.0018 23.2 7.0 38 379-421 48-85 (88)
412 PRK10564 maltose regulon perip 54.7 32 0.00069 32.3 5.6 42 224-265 253-295 (303)
413 KOG2063 Vacuolar assembly/sort 53.9 3.6E+02 0.0079 30.2 21.5 39 306-344 600-638 (877)
414 PF04190 DUF410: Protein of un 53.6 1.9E+02 0.0042 27.0 16.7 25 506-530 89-113 (260)
415 KOG4077 Cytochrome c oxidase, 53.1 1E+02 0.0022 24.7 7.2 34 539-572 79-112 (149)
416 PF14689 SPOB_a: Sensor_kinase 52.9 43 0.00093 22.9 4.8 21 303-323 29-49 (62)
417 KOG1308 Hsp70-interacting prot 52.3 11 0.00024 35.7 2.4 83 449-534 126-209 (377)
418 PHA02875 ankyrin repeat protei 52.3 2.2E+02 0.0047 28.9 12.1 16 270-285 73-88 (413)
419 PF07720 TPR_3: Tetratricopept 51.4 26 0.00057 20.7 3.1 24 636-659 2-25 (36)
420 KOG4077 Cytochrome c oxidase, 51.2 1.2E+02 0.0025 24.4 7.2 46 246-291 68-113 (149)
421 PF11817 Foie-gras_1: Foie gra 51.0 22 0.00049 32.8 4.2 59 605-663 183-246 (247)
422 PF00244 14-3-3: 14-3-3 protei 51.0 1.1E+02 0.0024 28.0 8.6 46 617-662 143-196 (236)
423 KOG0376 Serine-threonine phosp 50.2 41 0.0009 33.7 5.9 105 90-202 11-115 (476)
424 KOG2300 Uncharacterized conser 49.8 3E+02 0.0065 28.1 43.4 125 483-629 378-514 (629)
425 KOG0545 Aryl-hydrocarbon recep 48.9 2.1E+02 0.0046 26.1 10.3 64 510-578 233-296 (329)
426 KOG2581 26S proteasome regulat 48.0 2.9E+02 0.0063 27.4 11.5 160 468-645 120-299 (493)
427 PF00244 14-3-3: 14-3-3 protei 47.5 2.1E+02 0.0046 26.2 9.8 59 372-430 6-65 (236)
428 PF09670 Cas_Cas02710: CRISPR- 47.4 3E+02 0.0066 27.5 12.4 18 414-431 143-160 (379)
429 PF08311 Mad3_BUB1_I: Mad3/BUB 47.2 1.5E+02 0.0033 23.9 9.6 57 121-179 68-124 (126)
430 COG4259 Uncharacterized protei 46.9 40 0.00088 25.4 4.0 43 618-660 55-97 (121)
431 cd00280 TRFH Telomeric Repeat 46.8 1.3E+02 0.0028 26.1 7.4 22 607-628 118-139 (200)
432 smart00777 Mad3_BUB1_I Mad3/BU 46.8 1.3E+02 0.0028 24.2 7.3 20 196-215 103-122 (125)
433 PF14689 SPOB_a: Sensor_kinase 46.7 62 0.0013 22.1 4.8 23 407-429 28-50 (62)
434 PF09670 Cas_Cas02710: CRISPR- 46.2 2.8E+02 0.0061 27.7 11.2 53 378-431 142-198 (379)
435 PF11663 Toxin_YhaV: Toxin wit 46.2 23 0.0005 28.5 2.9 30 485-516 108-137 (140)
436 PF10255 Paf67: RNA polymerase 46.2 95 0.0021 31.0 7.7 57 606-662 128-191 (404)
437 KOG2908 26S proteasome regulat 45.6 2.9E+02 0.0063 26.7 11.7 118 527-663 58-185 (380)
438 PF11663 Toxin_YhaV: Toxin wit 45.3 34 0.00074 27.6 3.7 33 610-644 105-137 (140)
439 TIGR02508 type_III_yscG type I 45.0 1.4E+02 0.003 22.8 9.1 85 488-582 21-105 (115)
440 KOG0890 Protein kinase of the 44.7 7.6E+02 0.016 31.3 35.9 321 88-432 1388-1732(2382)
441 PF08311 Mad3_BUB1_I: Mad3/BUB 44.4 1.7E+02 0.0036 23.6 12.3 47 616-662 79-126 (126)
442 KOG2422 Uncharacterized conser 44.2 4E+02 0.0087 27.9 15.6 121 449-571 250-405 (665)
443 KOG0687 26S proteasome regulat 44.0 3E+02 0.0065 26.4 15.2 94 335-430 107-209 (393)
444 PF04781 DUF627: Protein of un 43.4 1.6E+02 0.0034 23.1 9.4 42 620-663 64-106 (111)
445 COG4259 Uncharacterized protei 43.3 1.5E+02 0.0032 22.6 6.4 60 523-586 53-112 (121)
446 KOG3807 Predicted membrane pro 43.2 1.8E+02 0.0038 27.8 8.4 113 84-199 241-354 (556)
447 KOG2062 26S proteasome regulat 43.1 4.7E+02 0.01 28.4 38.0 164 120-291 61-239 (929)
448 KOG1114 Tripeptidyl peptidase 42.4 5.4E+02 0.012 28.9 15.8 27 264-290 1233-1259(1304)
449 smart00777 Mad3_BUB1_I Mad3/BU 41.8 1.9E+02 0.004 23.4 7.5 45 616-660 79-124 (125)
450 KOG0403 Neoplastic transformat 41.8 3.8E+02 0.0083 27.0 27.5 22 337-358 219-240 (645)
451 PF11846 DUF3366: Domain of un 41.2 1.3E+02 0.0028 26.5 7.4 33 150-182 140-172 (193)
452 PF13934 ELYS: Nuclear pore co 41.0 2.8E+02 0.0061 25.2 13.2 97 128-239 88-184 (226)
453 KOG2062 26S proteasome regulat 40.6 5.1E+02 0.011 28.1 33.2 183 136-326 41-239 (929)
454 PF11848 DUF3368: Domain of un 40.0 99 0.0022 19.7 5.1 13 245-257 20-32 (48)
455 PF11817 Foie-gras_1: Foie gra 39.4 1.1E+02 0.0025 28.2 7.0 57 159-215 183-241 (247)
456 PF11846 DUF3366: Domain of un 38.9 1.7E+02 0.0036 25.8 7.7 33 259-291 141-173 (193)
457 COG4941 Predicted RNA polymera 38.5 2.7E+02 0.0059 26.8 8.8 122 515-662 264-392 (415)
458 KOG1308 Hsp70-interacting prot 38.3 24 0.00053 33.5 2.3 90 415-507 127-217 (377)
459 PRK10564 maltose regulon perip 37.8 74 0.0016 30.0 5.3 43 258-300 252-295 (303)
460 PF04762 IKI3: IKI3 family; I 37.1 7E+02 0.015 28.7 17.1 29 263-291 813-843 (928)
461 PF02184 HAT: HAT (Half-A-TPR) 37.1 76 0.0016 18.3 3.2 22 488-511 3-24 (32)
462 PF10475 DUF2450: Protein of u 37.0 2.5E+02 0.0053 26.8 9.0 26 632-657 194-219 (291)
463 KOG2422 Uncharacterized conser 36.3 5.3E+02 0.012 27.1 15.8 94 479-572 349-447 (665)
464 KOG0551 Hsp90 co-chaperone CNS 36.2 3.1E+02 0.0068 26.4 8.9 61 161-221 88-148 (390)
465 PRK14956 DNA polymerase III su 36.0 5.1E+02 0.011 26.8 12.6 36 261-296 247-282 (484)
466 cd08819 CARD_MDA5_2 Caspase ac 35.8 1.8E+02 0.004 21.6 7.4 14 311-324 50-63 (88)
467 PRK13342 recombination factor 35.7 4.9E+02 0.011 26.4 19.2 25 380-404 243-267 (413)
468 PF14669 Asp_Glu_race_2: Putat 35.3 3.1E+02 0.0067 24.1 15.6 54 373-426 138-205 (233)
469 PRK15180 Vi polysaccharide bio 35.1 5E+02 0.011 26.4 31.1 126 90-222 296-421 (831)
470 COG0735 Fur Fe2+/Zn2+ uptake r 35.0 1.1E+02 0.0025 25.4 5.6 56 77-133 15-70 (145)
471 KOG1464 COP9 signalosome, subu 34.9 3.8E+02 0.0082 24.9 25.7 185 169-357 42-256 (440)
472 KOG0991 Replication factor C, 34.7 3.6E+02 0.0078 24.6 10.4 47 189-237 236-282 (333)
473 KOG0128 RNA-binding protein SA 34.3 6.8E+02 0.015 27.7 35.4 201 115-325 110-340 (881)
474 COG5108 RPO41 Mitochondrial DN 33.9 2.8E+02 0.0061 29.5 8.9 91 232-325 33-131 (1117)
475 KOG0292 Vesicle coat complex C 33.2 3.7E+02 0.0081 29.8 9.9 129 128-290 653-781 (1202)
476 KOG1839 Uncharacterized protei 32.9 5E+02 0.011 30.3 11.3 157 411-567 941-1122(1236)
477 COG0735 Fur Fe2+/Zn2+ uptake r 32.8 2.5E+02 0.0054 23.4 7.2 13 419-431 37-49 (145)
478 KOG2297 Predicted translation 32.7 4.4E+02 0.0096 25.1 18.2 15 547-561 324-338 (412)
479 KOG1839 Uncharacterized protei 32.6 6E+02 0.013 29.7 11.8 93 89-181 938-1042(1236)
480 PF09477 Type_III_YscG: Bacter 32.6 2.4E+02 0.0052 22.0 10.0 82 130-222 18-99 (116)
481 KOG2297 Predicted translation 32.1 4.5E+02 0.0098 25.0 19.5 69 379-456 267-340 (412)
482 COG5159 RPN6 26S proteasome re 31.5 4.5E+02 0.0097 24.8 20.2 159 160-321 9-189 (421)
483 KOG0551 Hsp90 co-chaperone CNS 31.4 4.9E+02 0.011 25.2 10.4 95 474-571 83-180 (390)
484 COG2178 Predicted RNA-binding 31.0 3.7E+02 0.008 23.6 9.2 108 514-629 36-150 (204)
485 PF12968 DUF3856: Domain of Un 30.9 2.8E+02 0.006 22.2 10.6 92 519-627 21-127 (144)
486 KOG4567 GTPase-activating prot 29.7 3.2E+02 0.007 26.0 7.8 42 493-534 264-305 (370)
487 KOG4567 GTPase-activating prot 29.3 5.1E+02 0.011 24.7 10.1 72 457-533 263-344 (370)
488 cd00280 TRFH Telomeric Repeat 29.1 3.9E+02 0.0084 23.3 9.8 21 200-220 119-139 (200)
489 PF10366 Vps39_1: Vacuolar sor 28.8 2.8E+02 0.0061 21.6 7.5 26 440-465 42-67 (108)
490 PRK12798 chemotaxis protein; R 28.7 6.2E+02 0.013 25.5 21.8 153 240-396 125-286 (421)
491 cd07153 Fur_like Ferric uptake 28.6 1.8E+02 0.0039 22.8 5.7 48 88-135 5-52 (116)
492 PF13762 MNE1: Mitochondrial s 28.6 3.5E+02 0.0075 22.5 10.4 80 265-344 42-127 (145)
493 PF09454 Vps23_core: Vps23 cor 28.4 88 0.0019 21.7 3.2 48 190-238 6-53 (65)
494 PF10366 Vps39_1: Vacuolar sor 28.3 2.9E+02 0.0063 21.6 7.2 27 120-146 41-67 (108)
495 PF12926 MOZART2: Mitotic-spin 28.3 2.5E+02 0.0054 20.8 7.8 42 248-289 29-70 (88)
496 PF11123 DNA_Packaging_2: DNA 28.2 2E+02 0.0043 20.4 4.7 33 133-167 12-44 (82)
497 PF04190 DUF410: Protein of un 27.2 5.2E+02 0.011 24.1 17.5 88 87-177 14-113 (260)
498 PF10255 Paf67: RNA polymerase 26.7 6.7E+02 0.015 25.3 11.4 63 120-182 124-192 (404)
499 PF09454 Vps23_core: Vps23 cor 26.7 1.4E+02 0.0031 20.7 4.0 50 81-131 6-55 (65)
500 KOG4521 Nuclear pore complex, 26.5 1.1E+03 0.023 27.6 16.2 58 509-566 985-1043(1480)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-70 Score=602.34 Aligned_cols=551 Identities=19% Similarity=0.257 Sum_probs=443.7
Q ss_pred CCChhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006010 60 KSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIR 139 (664)
Q Consensus 60 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (664)
......|..+|+.+.. .+.+|+..+|..++..|.+.+.++.+.+++..+.+.+..++...++.++..|++.|+.+.|.+
T Consensus 64 ~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~ 142 (857)
T PLN03077 64 HGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWY 142 (857)
T ss_pred CCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHH
Confidence 4567788899998865 456788889999999999999999999999999988888888889999999999999999999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcc
Q 006010 140 LFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMP 219 (664)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 219 (664)
+|+.| .+||+.+|+.++.+|++.|++++|+.+|++|.. .|+.||..+|+.++.+++..++++.+.+++..|.
T Consensus 143 ~f~~m-----~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~---~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 214 (857)
T PLN03077 143 VFGKM-----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW---AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214 (857)
T ss_pred HHhcC-----CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHH
Confidence 99998 357889999999999999999999999999988 6888988888888888877777777888888777
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 006010 220 VRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVT 299 (664)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 299 (664)
+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ||.++||.+|.+|++.|++++|+++|++|...|+.||..+
T Consensus 215 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~t 290 (857)
T PLN03077 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290 (857)
T ss_pred HcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 777777777888888888888888888888877763 5777788888888888888888888888877777777778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010 300 YNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFK 379 (664)
Q Consensus 300 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (664)
|+.++.+|++.|+.+.|.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~ 366 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEK 366 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHh
Confidence 8888877777777777777777777777777777777777777777777777777777753 466777777777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010 380 EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEI 459 (664)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 459 (664)
.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+++.|+++|++.|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHH---------------------------
Q 006010 460 WKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSS--------------------------- 512 (664)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--------------------------- 512 (664)
|+.|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||+.
T Consensus 447 f~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 447 FHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred HHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 777653 4556666666666666666666666666654 35566655554
Q ss_pred --------HHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006010 513 --------MIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNI 584 (664)
Q Consensus 513 --------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 584 (664)
++.+|+++|++++|.++|+++ .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~-------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH-------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc-------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 455666666666666666554 46889999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHH-HcCCCCChHHHHHHHHHhcccchHHHHHHHHHh
Q 006010 585 FLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVML-QKFLSPQTSTWERVVQELCRPKRIQAAINKCWS 660 (664)
Q Consensus 585 ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 660 (664)
++.+ |.+.|++++|.++|+.|. +.|+.|+..+|..++++|++.|++++|.+++.+
T Consensus 595 ll~a---------------------~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 595 LLCA---------------------CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHH---------------------HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999 788888888888888887 448888888888888888888888888887665
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-68 Score=571.23 Aligned_cols=540 Identities=18% Similarity=0.228 Sum_probs=503.6
Q ss_pred CChhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCC-cCHHHHHHHHHHHHhcCCHHHHHH
Q 006010 61 SEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRV-VLEKSFIFIFKAYGKAHLVEEAIR 139 (664)
Q Consensus 61 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 139 (664)
.+...++...++.... .++...|..++..+++.|++++|.++|+.|.+.+.. ++...+..++..|.+.|..++|++
T Consensus 351 ~~~~~~~~~~~~~~~~---~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~ 427 (1060)
T PLN03218 351 VEEENSLAAYNGGVSG---KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFR 427 (1060)
T ss_pred chhhhhHHHhccccCC---CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHH
Confidence 4445566666666554 356778999999999999999999999999998854 455567788999999999999999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcc
Q 006010 140 LFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMP 219 (664)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 219 (664)
+|..|. .|+..+|+.++.+|++.|++++|.++|+.|.+ .|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 428 lf~~M~-----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~---~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~ 499 (1060)
T PLN03218 428 FAKLIR-----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQE---AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499 (1060)
T ss_pred HHHHcC-----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 999883 49999999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--cCCCCCH
Q 006010 220 VRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFL--KGCLPNE 297 (664)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~g~~p~~ 297 (664)
+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||.
T Consensus 500 ~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~ 579 (1060)
T PLN03218 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976 5789999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006010 298 VTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGL 377 (664)
Q Consensus 298 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (664)
.+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~ 659 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006010 378 FKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAV 457 (664)
Q Consensus 378 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 457 (664)
++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.
T Consensus 660 ~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAl 739 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHH----c-------------
Q 006010 458 EIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCN----A------------- 520 (664)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~------------- 520 (664)
++|++|...|+.||..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ +
T Consensus 740 elf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g 819 (1060)
T PLN03218 740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG 819 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999876432 1
Q ss_pred ------CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhcc
Q 006010 521 ------GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLE 594 (664)
Q Consensus 521 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 594 (664)
+..+.|..+|++| .+.|..||..+|+.++.++++.+..+.+..+++.|...+..|+..+|+.++.+
T Consensus 820 ~~~~~n~w~~~Al~lf~eM--~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g------ 891 (1060)
T PLN03218 820 RPQIENKWTSWALMVYRET--ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG------ 891 (1060)
T ss_pred ccccccchHHHHHHHHHHH--HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh------
Confidence 1246799999999 77899999999999998888899999999999999888889999999999998
Q ss_pred CCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChH
Q 006010 595 APQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTS 636 (664)
Q Consensus 595 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 636 (664)
+.+. .++|..++++|.+.|+.|+..
T Consensus 892 ---------------~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 892 ---------------FGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred ---------------hccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 5322 368999999999999999864
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.7e-68 Score=568.02 Aligned_cols=515 Identities=21% Similarity=0.280 Sum_probs=484.6
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHH
Q 006010 115 VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLT 194 (664)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 194 (664)
..+...+..++..+.+.|++++|+++|+.|....-.+++...++.++..|.+.|..++|..+|+.|.. ||..+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-------pd~~T 439 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-------PTLST 439 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-------CCHHH
Confidence 44566788888999999999999999999965544567788889999999999999999999998853 89999
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006010 195 FNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCK 274 (664)
Q Consensus 195 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 274 (664)
|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCChhhHHHHHHHHHhcCChhHHH
Q 006010 275 NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVA--SKCMPNEVTYGTIINGLVKLGRAVDGA 352 (664)
Q Consensus 275 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~ 352 (664)
.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999986 678999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006010 353 RVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNG 432 (664)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 432 (664)
++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHH
Q 006010 433 CAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSS 512 (664)
Q Consensus 433 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 512 (664)
+.|+..+|+.++.+|++.|++++|.++|+.|.+.++.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHH----c-------------------CChhHHHHHHHH
Q 006010 513 MIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCK----Q-------------------SNISHSIDLLNS 569 (664)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~ 569 (664)
++.+|++.|++++|.+++++| .+.+..||..+|+.++..|.+ . +..++|..+|++
T Consensus 760 LL~a~~k~G~le~A~~l~~~M--~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e 837 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQA--KEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE 837 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence 999999999999999999999 677899999999999876432 1 124679999999
Q ss_pred HHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccc
Q 006010 570 MMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPK 649 (664)
Q Consensus 570 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 649 (664)
|.+.|+.||..||..++.. +++.+..+.+..+++.|...+..|+..+|..+++++++.
T Consensus 838 M~~~Gi~Pd~~T~~~vL~c---------------------l~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~- 895 (1060)
T PLN03218 838 TISAGTLPTMEVLSQVLGC---------------------LQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY- 895 (1060)
T ss_pred HHHCCCCCCHHHHHHHHHH---------------------hcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC-
Confidence 9999999999999999954 788888999999999988778888999999999998543
Q ss_pred hHHHHHHHHHhh
Q 006010 650 RIQAAINKCWSN 661 (664)
Q Consensus 650 ~~~~A~~~~~~~ 661 (664)
.++|+..+.+.
T Consensus 896 -~~~A~~l~~em 906 (1060)
T PLN03218 896 -DPRAFSLLEEA 906 (1060)
T ss_pred -hHHHHHHHHHH
Confidence 36799888764
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-68 Score=585.05 Aligned_cols=542 Identities=18% Similarity=0.240 Sum_probs=298.4
Q ss_pred CChhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 006010 61 SEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRL 140 (664)
Q Consensus 61 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 140 (664)
.+.+.|..+|+.+.. |+..+|+.++..|++.|++++|..+|++|...|..|+..+|..++.++...++++.+.++
T Consensus 135 g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~ 209 (857)
T PLN03077 135 GELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV 209 (857)
T ss_pred CChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHH
Confidence 445667777777753 567788888888888888888888888888777777766665555555555555555555
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhccc
Q 006010 141 FHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPV 220 (664)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 220 (664)
+..+. ..|..|++.+++.++.+|++.|++++|..+|+.|.. ||..+||.++.+|++.|++++|.++|++|..
T Consensus 210 ~~~~~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-------~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 210 HAHVV-RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-------RDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred HHHHH-HcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-------CCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44442 234445555555555555555555555555555432 3445555555555555555555555555555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 006010 221 RNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTY 300 (664)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 300 (664)
.|+.||..+|+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~ 357 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSW 357 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeH
Confidence 555555555555555555555555555555555555555555555555555555555555555555543 2344555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006010 301 NTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKE 380 (664)
Q Consensus 301 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (664)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.++..+++.++.+|++.
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 006010 381 GKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIW 460 (664)
Q Consensus 381 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 460 (664)
|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|+.+.+.+++
T Consensus 438 g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 438 KCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 555555555555432 2444555555555555555555555555543 24555555555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCC
Q 006010 461 KDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKS 540 (664)
Q Consensus 461 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 540 (664)
..+.+.|..++..+++.++.+|++.|++++|.++|+.+ .||..+|+.++.+|++.|+.++|.++|++| .+.+.
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M--~~~g~ 585 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRM--VESGV 585 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHH--HHcCC
Confidence 55555555555555555555555555555555555444 345555555555555555555555555555 34455
Q ss_pred CCCHhHHHHHHHHHHHcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchH
Q 006010 541 QPDVFTYNILLNALCKQSNISHSIDLLNSMM-DRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGG 619 (664)
Q Consensus 541 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 619 (664)
.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|+.++.. |++.|++++|
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~---------------------l~r~G~~~eA 644 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL---------------------LGRAGKLTEA 644 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH---------------------HHhCCCHHHH
Confidence 5555555555555555555555555555555 34555555555555555 4555555555
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHH
Q 006010 620 FKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAI 655 (664)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 655 (664)
.+++++|. +.||..+|..|+.+|..+|+.+.|.
T Consensus 645 ~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 645 YNFINKMP---ITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred HHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHH
Confidence 55555442 4455555555555554444444443
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-61 Score=517.50 Aligned_cols=476 Identities=18% Similarity=0.241 Sum_probs=450.7
Q ss_pred CChhHHHHHHHHHHhCCCcchHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHH
Q 006010 81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRREK-RVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNS 159 (664)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 159 (664)
.+...|+.++..+.+.|++++|..+|+.|...+ ..++..+|+.++.++.+.++++.|.+++..+. ..|..|+..+|+.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~-~~g~~~~~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVE-SSGFEPDQYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCcchHHHHH
Confidence 355689999999999999999999999999764 56789999999999999999999999999985 5678899999999
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHh
Q 006010 160 VLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK 239 (664)
Q Consensus 160 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (664)
++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~-------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE-------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC-------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 99999999999999999999964 79999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010 240 ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSL 319 (664)
Q Consensus 240 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 319 (664)
.|..+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|.++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999995 45899999999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006010 320 LDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCK 399 (664)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 399 (664)
|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.+|..+++.++.+|++.|++++|.++|++|.+
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---- 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---- 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHH
Q 006010 400 PNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAK-NNCVYNEVCYSVL 478 (664)
Q Consensus 400 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l 478 (664)
||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|..++|.++|+.|.+ .++.|+..+|+.+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 689999999999999999999999999999999999999999999999999999999999999986 5889999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC
Q 006010 479 IHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS 558 (664)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 558 (664)
+.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..++++++...+. +..+|..++..|++.|
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~---~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE---KLNNYVVLLNLYNSSG 542 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC---CCcchHHHHHHHHhCC
Confidence 99999999999999999876 46899999999999999999999999999999543322 5678999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCC
Q 006010 559 NISHSIDLLNSMMDRGCDPD 578 (664)
Q Consensus 559 ~~~~A~~~~~~~~~~~~~p~ 578 (664)
++++|.+++++|.+.|+...
T Consensus 543 ~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 543 RQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred CHHHHHHHHHHHHHcCCccC
Confidence 99999999999999987643
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.6e-61 Score=514.54 Aligned_cols=476 Identities=20% Similarity=0.307 Sum_probs=452.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHH
Q 006010 117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFN 196 (664)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 196 (664)
+...|+.++..+.+.|++++|+++|+.|....+..|+..+|+.++.++.+.++++.|.+++..+.+ .|+.||..+|+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~---~g~~~~~~~~n 162 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES---SGFEPDQYMMN 162 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCcchHHHH
Confidence 344789999999999999999999999976656789999999999999999999999999999998 88999999999
Q ss_pred HHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006010 197 LVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNG 276 (664)
Q Consensus 197 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 276 (664)
.++.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999997 47899999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 006010 277 ELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLM 356 (664)
Q Consensus 277 ~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 356 (664)
+.+.+.+++..+.+.|..||..+|+.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999996 4689999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 006010 357 SMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAAN 436 (664)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 436 (664)
+|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|. .+|
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 468
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh-CCCCcCHHhHHHHHH
Q 006010 437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLS-RGCKPDVVAYSSMIH 515 (664)
Q Consensus 437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~ 515 (664)
..+|+.|+.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++.
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 589999999999999
Q ss_pred HHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHhhhhhcc
Q 006010 516 GLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD-LVTCNIFLTALKEKLE 594 (664)
Q Consensus 516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~ 594 (664)
+|++.|++++|.++++++ +..|+..+|+.++.+|...|+++.|..+++++.+ +.|+ ..+|..++..
T Consensus 471 ~l~r~G~~~eA~~~~~~~-----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~------ 537 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA-----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNL------ 537 (697)
T ss_pred HHHhcCCHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHH------
Confidence 999999999999999887 4789999999999999999999999999999975 6675 5678888887
Q ss_pred CCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCCh
Q 006010 595 APQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQT 635 (664)
Q Consensus 595 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 635 (664)
|++.|+|++|.++++.|.++|+.+.+
T Consensus 538 ---------------y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 538 ---------------YNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred ---------------HHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999876443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.5e-35 Score=330.47 Aligned_cols=579 Identities=12% Similarity=0.042 Sum_probs=484.4
Q ss_pred CCChhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006010 60 KSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIR 139 (664)
Q Consensus 60 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (664)
..+.+.|...|..+.... +.++..+..+...+...|+++.|...+..+.... +.+...+..++..+...|++++|.+
T Consensus 308 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 384 (899)
T TIGR02917 308 LGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAE 384 (899)
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 567788999998876543 2456677888899999999999999999998766 4467788899999999999999999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcc
Q 006010 140 LFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMP 219 (664)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 219 (664)
.|+++.+. .+.+...+..+...+...|++++|.+.++.+.+..+ ........++..+.+.|++++|.++++.+.
T Consensus 385 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 458 (899)
T TIGR02917 385 YLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP----ELGRADLLLILSYLRSGQFDKALAAAKKLE 458 (899)
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC----cchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99998664 345677888999999999999999999999987221 123455667888999999999999999988
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 006010 220 VRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVT 299 (664)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 299 (664)
... +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++...+. .+..+
T Consensus 459 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 535 (899)
T TIGR02917 459 KKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRA 535 (899)
T ss_pred HhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHH
Confidence 764 6678889999999999999999999999988754 34566788889999999999999999999987743 36788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010 300 YNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFK 379 (664)
Q Consensus 300 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (664)
+..+...+...|+.++|..+++++...+ +.+...+..++..+...|++++|..+++.+.+... .+...|..++.++.+
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 8899999999999999999999998764 45667788899999999999999999999987643 377889999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010 380 EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEI 459 (664)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 459 (664)
.|++++|+..|+++.+... .+...+..+..++...|++++|...++++.+.. +.+...+..++..+...|++++|.++
T Consensus 614 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 691 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKI 691 (899)
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999987643 366778889999999999999999999998874 66788899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCC
Q 006010 460 WKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPK 539 (664)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 539 (664)
++.+.... +.+...+..+...+...|++++|.+.++.+... .|+..++..++.++.+.|++++|...+++++...+.
T Consensus 692 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 768 (899)
T TIGR02917 692 AKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN 768 (899)
T ss_pred HHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99998876 567778888999999999999999999999886 455577888999999999999999999999754443
Q ss_pred CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhcc------------CCCCchhhhHHHH
Q 006010 540 SQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLE------------APQDGTDFLNELA 607 (664)
Q Consensus 540 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~------------~~~~~~~~~~~l~ 607 (664)
+...+..+...|...|++++|...|+++.+.. +.+...+..+...+...++ .......++..++
T Consensus 769 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 844 (899)
T TIGR02917 769 ---DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLG 844 (899)
T ss_pred ---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 67788889999999999999999999999742 3344555555554444333 1112233456788
Q ss_pred HHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 608 IRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
.++...|++++|.++++++.+.+ +.++.++..++.++++.|+.++|.+.+.+.+
T Consensus 845 ~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 845 WLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999999999999999974 4489999999999999999999999988765
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.6e-34 Score=321.00 Aligned_cols=577 Identities=12% Similarity=0.052 Sum_probs=482.0
Q ss_pred CCChhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006010 60 KSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIR 139 (664)
Q Consensus 60 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (664)
..+.+.|...|+.+.+..+ ....++..+...+...|+++.|...+..+.+..+ .+...+..++..+...|++++|+.
T Consensus 274 ~~~~~~A~~~~~~~l~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~ 350 (899)
T TIGR02917 274 KKNYEDARETLQDALKSAP--EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIA 350 (899)
T ss_pred hcCHHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHH
Confidence 4678899999988766432 2345666777889999999999999999998764 356678889999999999999999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcc
Q 006010 140 LFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMP 219 (664)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 219 (664)
.+..+... .+.+...+..++..+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++|.+.|+.+.
T Consensus 351 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 424 (899)
T TIGR02917 351 TLSPALGL--DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD----PENAAARTQLGISKLSQGDPSEAIADLETAA 424 (899)
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 99998764 45678889999999999999999999999998721 2355677888889999999999999999998
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 006010 220 VRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVT 299 (664)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 299 (664)
+.+ +........++..+.+.|++++|..+++.+... .+.+..++..+...+...|++++|.+.|+++.... +.+...
T Consensus 425 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 501 (899)
T TIGR02917 425 QLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPA 501 (899)
T ss_pred hhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHH
Confidence 765 334556777888999999999999999999875 35577899999999999999999999999998764 335667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010 300 YNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFK 379 (664)
Q Consensus 300 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (664)
+..+...+...|++++|.+.++++.+.+ +.+..++..+...+.+.|+.++|..++.++...+.. +...+..++..+.+
T Consensus 502 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 579 (899)
T TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLG 579 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHH
Confidence 8888999999999999999999998864 457788899999999999999999999999887543 66778889999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010 380 EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEI 459 (664)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 459 (664)
.|++++|..+++.+.+.. +.+...|..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...
T Consensus 580 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 580 KGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred CCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998764 4477889999999999999999999999999875 56778899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCC
Q 006010 460 WKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPK 539 (664)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 539 (664)
++++.+.. +.+..++..++..+...|++++|..+++.+.+.+ +++...+..++..+...|++++|...|++++...
T Consensus 658 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-- 733 (899)
T TIGR02917 658 LKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-- 733 (899)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence 99999866 5678899999999999999999999999999875 4567788889999999999999999999996533
Q ss_pred CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHhhhhhcc-------------CCCCchhhhHH
Q 006010 540 SQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD-LVTCNIFLTALKEKLE-------------APQDGTDFLNE 605 (664)
Q Consensus 540 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~-------------~~~~~~~~~~~ 605 (664)
|+..++..++.++.+.|++++|.+.++++.+. .|+ ...+..+...+...++ ........+..
T Consensus 734 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 809 (899)
T TIGR02917 734 --PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN 809 (899)
T ss_pred --CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34467778899999999999999999999974 444 4444444444332221 11122344567
Q ss_pred HHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 606 LAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
+++.+...|+ .+|..+++++.+. .+.++..+..++..+...|++++|++.+++.+
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8889999999 8899999999875 34466888889999999999999999988765
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.6e-26 Score=259.98 Aligned_cols=564 Identities=10% Similarity=0.033 Sum_probs=361.5
Q ss_pred cCCChhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHH----------------HH
Q 006010 59 AKSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKS----------------FI 122 (664)
Q Consensus 59 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~ 122 (664)
...+++.|.+.+.++.... +.++.++...+..+.+.|+.++|.+.++++.+..+.. ... ..
T Consensus 40 ~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~-~~~~~~~~~~~~~~~~~~~~l 116 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDS-NAYRSSRTTMLLSTPEGRQAL 116 (1157)
T ss_pred hhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHhcCCchhhHH
Confidence 3577888998888776654 2367888999999999999999999999999887543 222 24
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHH-HHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHH
Q 006010 123 FIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKS-FNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKT 201 (664)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 201 (664)
..++.+...|++++|++.|+.+++. .+++... ...........|+.++|+..++++.+.. +.+...+..+...
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~--~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~----P~~~~~~~~LA~l 190 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNG--APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY----PGNTGLRNTLALL 190 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccC--CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC----CCCHHHHHHHHHH
Confidence 4556788999999999999998754 3344321 1112222234589999999999998832 2355677788889
Q ss_pred HHhcCChhHHHHHHhhcccCCC----------------CCCHH---HHH-------------------------------
Q 006010 202 VCRLGLVDNAIQLFREMPVRNC----------------EPDIY---TYC------------------------------- 231 (664)
Q Consensus 202 ~~~~g~~~~A~~~~~~~~~~~~----------------~~~~~---~~~------------------------------- 231 (664)
+...|+.++|++.++++..... .++.. .+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 9999999999999998754320 00000 000
Q ss_pred ---HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHH-------
Q 006010 232 ---TLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLP-NEVTY------- 300 (664)
Q Consensus 232 ---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~------- 300 (664)
.....+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..... +...+
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 11234556677788888887777653 2356677777777778888888888887776653221 11111
Q ss_pred -----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006010 301 -----NTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLIS 375 (664)
Q Consensus 301 -----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (664)
......+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++.+..+. +...+..+..
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 112335567777888888888777763 334556666777777788888888888777765433 4445555555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006010 376 GLFKEGKAEDAMKLWKQMMEKGCK--------PNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGF 447 (664)
Q Consensus 376 ~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 447 (664)
.+. .++.++|+.+++.+...... .....+..+...+...|++++|...|+++++.. +.+...+..+...|
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 553 34566666666544321100 001223345556667788888888888887764 44666777778888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC-------------------------
Q 006010 448 FESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG------------------------- 502 (664)
Q Consensus 448 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------- 502 (664)
.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+....
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 88888888888888877654 3344333333334445555555555554432211
Q ss_pred --------------CCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHH
Q 006010 503 --------------CKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLN 568 (664)
Q Consensus 503 --------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 568 (664)
.+++...+..+...+.+.|++++|+..|++++...|. +...+..++..+...|++++|.+.++
T Consensus 585 ~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~---~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 585 DSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG---NADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1223334445555555566666666666665443333 44455555555656666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCC--CC---ChHHHHHHHH
Q 006010 569 SMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFL--SP---QTSTWERVVQ 643 (664)
Q Consensus 569 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~ 643 (664)
+..+ ..|+... ....++.++...|++++|.++++++.+..- +| +..++..++.
T Consensus 662 ~ll~--~~p~~~~--------------------~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~ 719 (1157)
T PRK11447 662 KLPA--TANDSLN--------------------TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAAR 719 (1157)
T ss_pred HHhc--cCCCChH--------------------HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHH
Confidence 5544 3333322 122345558899999999999999987521 12 2256777899
Q ss_pred HhcccchHHHHHHHHHhhh
Q 006010 644 ELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 644 ~~~~~g~~~~A~~~~~~~l 662 (664)
.+...|+.++|++.|++.+
T Consensus 720 ~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 720 FEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 9999999999999998876
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.2e-24 Score=245.05 Aligned_cols=541 Identities=12% Similarity=0.045 Sum_probs=352.1
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHH--------
Q 006010 85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKS-------- 156 (664)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------- 156 (664)
.+...+......++.+.|.+.+.++....+. ++.++..++..+.+.|+.++|.+.++++.+.. +.+...
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHH
Confidence 3555677888999999999999999987744 68889999999999999999999999997753 333322
Q ss_pred --------HHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHH-HHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCH
Q 006010 157 --------FNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTL-TFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDI 227 (664)
Q Consensus 157 --------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 227 (664)
....+..+.+.|++++|+..|+.+.+. .+|+.. ............|+.++|++.++++.+.. +.+.
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~----~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~ 181 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNG----APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNT 181 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccC----CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCH
Confidence 234455788999999999999999872 223322 11111222234599999999999999875 5577
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----------------CCHH---HHH----------------------
Q 006010 228 YTYCTLMDGLCKENRLDEAVLLLDEMQVDGCF----------------PTPV---TFN---------------------- 266 (664)
Q Consensus 228 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------------~~~~---~~~---------------------- 266 (664)
..+..+...+...|+.++|++.++++...... ++.. .+.
T Consensus 182 ~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~ 261 (1157)
T PRK11447 182 GLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQ 261 (1157)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 88899999999999999999999988653210 0000 010
Q ss_pred ------------HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-Chh
Q 006010 267 ------------VLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMP-NEV 333 (664)
Q Consensus 267 ------------~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~ 333 (664)
.....+...|++++|+..|++...... .+...+..+...+.+.|++++|...|++..+..... ...
T Consensus 262 ~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~ 340 (1157)
T PRK11447 262 QKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD 340 (1157)
T ss_pred HHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh
Confidence 112334556777777777777766532 255666677777777777777777777776643111 111
Q ss_pred hH------------HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006010 334 TY------------GTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPN 401 (664)
Q Consensus 334 ~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 401 (664)
.+ ......+.+.|++++|...++++.+..+. +...+..+..++...|++++|++.|+++.+.... +
T Consensus 341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~ 418 (1157)
T PRK11447 341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-N 418 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C
Confidence 11 11233455677777777777777766433 4555666677777777777777777777765322 3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 006010 402 TVVYSALIDGLCRVGKPDEAEEILFEMINNGC--------AANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEV 473 (664)
Q Consensus 402 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 473 (664)
...+..+...+. .++.++|..+++.+..... ......+..+...+...|++++|++.+++..+.. |.+..
T Consensus 419 ~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~ 496 (1157)
T PRK11447 419 TNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVW 496 (1157)
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 444555555553 3456777666655432110 0011234455667778889999999999888866 44666
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC---------------
Q 006010 474 CYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEP--------------- 538 (664)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------- 538 (664)
.+..+...|...|++++|...++++++.. +.+...+..+...+...|+.++|...++.+.....
T Consensus 497 ~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 497 LTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 77778888899999999999999887642 22333444444444556666666666555411000
Q ss_pred ----------------------CCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCC
Q 006010 539 ----------------------KSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAP 596 (664)
Q Consensus 539 ----------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 596 (664)
..+.+...+..+...+.+.|++++|+..|+++++ ..|+...
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~--------------- 638 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNAD--------------- 638 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHH---------------
Confidence 0111222334444555555555555555555554 2333221
Q ss_pred CCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 597 QDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 597 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
.+..++.+|...|++++|.+.++++.+. -+.++..+..++.++...|++++|.+.+.+.+
T Consensus 639 -----a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 639 -----ARLGLIEVDIAQGDLAAARAQLAKLPAT-ANDSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred -----HHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1223445589999999999999988764 23456778888999999999999999888754
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=2.3e-22 Score=215.64 Aligned_cols=547 Identities=13% Similarity=0.089 Sum_probs=359.0
Q ss_pred CCChhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006010 60 KSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIR 139 (664)
Q Consensus 60 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (664)
..+.+.|...|+.+.+..+ -++.++..+...|...|++++|+..++...+.++ .+...+..+.. .+++++|.+
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~La~----i~~~~kA~~ 129 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSLAA----IPVEVKSVT 129 (987)
T ss_pred CCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHHHH----hccChhHHH
Confidence 4677789999998877653 3578889999999999999999999999998764 35544444422 289999999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHH--------HHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHH-HHHHHhcCChhH
Q 006010 140 LFHTMVDEFHCKRTVKSFNSVLNV--------IIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLV-IKTVCRLGLVDN 210 (664)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~ 210 (664)
+++++.+..+.. ...+..+... |.+.++..++++ ... ....|+..+.... ...|.+.|++++
T Consensus 130 ~ye~l~~~~P~n--~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~---~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 130 TVEELLAQQKAC--DAVPTLRCRSEVGQNALRLAQLPVARAQLN----DAT---FAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred HHHHHHHhCCCC--hhHHHHHHHHhhccchhhhhhHHHHHHHHH----Hhh---hCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 999998864333 4444444444 666655555554 222 1223345544444 889999999999
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010 211 AIQLFREMPVRNCEPDIYTYCTLMDGLCK-ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMF 289 (664)
Q Consensus 211 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 289 (664)
|++.+.++.+.+ +.+......|..+|.. .++ +++..+++. .+..++..+..++..|.+.|+.++|.++++++.
T Consensus 201 Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 201 ADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 999999999886 4556667778788887 466 777777553 223578889999999999999999999998875
Q ss_pred HcCCC-CCHHHH------------------------------HHHHHHHHhcCChHHHHHHH------------------
Q 006010 290 LKGCL-PNEVTY------------------------------NTLIHGLCLKGNLDKAVSLL------------------ 320 (664)
Q Consensus 290 ~~g~~-p~~~~~------------------------------~~l~~~~~~~g~~~~a~~~~------------------ 320 (664)
..-.. |...++ ..++..+.+.++++.+.++.
T Consensus 275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVA 354 (987)
T ss_pred ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence 43111 211111 11234444555555444432
Q ss_pred -----------HHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCC---hH
Q 006010 321 -----------DRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEER--KFHVNEYIYSTLISGLFKEGK---AE 384 (664)
Q Consensus 321 -----------~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~---~~ 384 (664)
+.|.+.. +-+......+.-.....|+.++|.+++...... +-..+......++..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 1111110 113333333444556788888888888887662 122244555567777776655 33
Q ss_pred HHHHH----------------------HHHHHHc-CC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006010 385 DAMKL----------------------WKQMMEK-GC-KP--NTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAF 438 (664)
Q Consensus 385 ~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 438 (664)
++..+ ++..... +. ++ +...|..+..++.. +++++|...+.+.... .|+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchH
Confidence 33222 1111111 11 22 45566666666665 7888888877777765 34444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHH
Q 006010 439 TYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLC 518 (664)
Q Consensus 439 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 518 (664)
....+...+...|++++|...|+++... +|+...+..+...+...|+.++|...+++.++.. +++...+..+.....
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHH
Confidence 4444455556788888888888887554 3444455666777788888888888888887753 222233333444445
Q ss_pred HcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCC
Q 006010 519 NAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQD 598 (664)
Q Consensus 519 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 598 (664)
..|++++|...+++++.. .|+...|..+..++.+.|++++|+..+++..+ ..|+.......+..+
T Consensus 588 ~~Gr~~eAl~~~~~AL~l----~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~a--------- 652 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI----APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYA--------- 652 (987)
T ss_pred hCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH---------
Confidence 568888888888888643 34566777888888888888888888888887 567766544444432
Q ss_pred chhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 599 GTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
+...|++++|.+.++++.+. .+.++..+..++.++...|++++|++.+++.+
T Consensus 653 -----------L~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 653 -----------LWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred -----------HHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777888888888877764 23456777778888888888888877777654
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=6.5e-22 Score=212.26 Aligned_cols=521 Identities=12% Similarity=0.065 Sum_probs=366.5
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Q 006010 86 FYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVII 165 (664)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (664)
+......+...|++++|...|+.+++..+. +..++..++..|...|++++|+..+++.++. .+.+...+..+ ..+
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~L-a~i- 121 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSL-AAI- 121 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH-HHh-
Confidence 333445556669999999999999998866 5889999999999999999999999999764 33444444444 222
Q ss_pred HcCCHhHHHHHHHHHHhcccCCCCcC-HHHHHHHHHH--------HHhcCChhHHHHHHhhcccCCCCCCHHHHHHH-HH
Q 006010 166 QEGLYHRALEFYNHIVNAKHMNILPN-TLTFNLVIKT--------VCRLGLVDNAIQLFREMPVRNCEPDIYTYCTL-MD 235 (664)
Q Consensus 166 ~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~ 235 (664)
+++.+|..+|+++.+. .|+ ..++..+... |.+. ++|.+.++ .......|+..+.... ..
T Consensus 122 --~~~~kA~~~ye~l~~~-----~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~r 190 (987)
T PRK09782 122 --PVEVKSVTTVEELLAQ-----QKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQ 190 (987)
T ss_pred --ccChhHHHHHHHHHHh-----CCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHH
Confidence 8899999999999883 333 3444444443 5555 55555554 3333223345544444 89
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006010 236 GLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCK-NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLD 314 (664)
Q Consensus 236 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 314 (664)
.|.+.|++++|+++++++.+.+. .+......|..+|.. .++ +++..+++. .++-+...+..++..+.+.|+.+
T Consensus 191 lY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~ 264 (987)
T PRK09782 191 RAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKA 264 (987)
T ss_pred HHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999863 355567777778887 466 888888553 23357888999999999999999
Q ss_pred HHHHHHHHHHHCCCC-CChhhH------------------------------HHHHHHHHhcCChhHHHHHHH-------
Q 006010 315 KAVSLLDRMVASKCM-PNEVTY------------------------------GTIINGLVKLGRAVDGARVLM------- 356 (664)
Q Consensus 315 ~a~~~~~~~~~~~~~-~~~~~~------------------------------~~ll~~~~~~~~~~~a~~~~~------- 356 (664)
+|.++++++...-.. |...++ ..++..+.+.++++.+.++..
T Consensus 265 ~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (987)
T PRK09782 265 RLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEM 344 (987)
T ss_pred HHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchH
Confidence 999999987543111 222222 122455566666665554422
Q ss_pred ----------------------HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHH
Q 006010 357 ----------------------SMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEK-G-CKPNTVVYSALIDGL 412 (664)
Q Consensus 357 ----------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~ 412 (664)
.|.... +-+......+.....+.|+.++|..+++..... + ...+......++..|
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 423 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLL 423 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHH
Confidence 111110 113333344444566889999999999998872 1 223444555777777
Q ss_pred HhcCC---hhHHHHH-------------------------HHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006010 413 CRVGK---PDEAEEI-------------------------LFEMINNGCAA--NAFTYSSLMKGFFESGKGHKAVEIWKD 462 (664)
Q Consensus 413 ~~~~~---~~~a~~~-------------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 462 (664)
.+.+. ..++..+ +...... .++ +...+..+..++.. ++.++|+..+.+
T Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~ 501 (987)
T PRK09782 424 ESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQ 501 (987)
T ss_pred HhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHH
Confidence 76655 2222222 2222222 244 67788888888876 899999998888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCC
Q 006010 463 MAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQP 542 (664)
Q Consensus 463 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 542 (664)
..... |+......+...+...|++++|...|+++... .|+...+..++.++.+.|++++|..++++++...+.
T Consensus 502 Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~--- 574 (987)
T PRK09782 502 AEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG--- 574 (987)
T ss_pred HHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc---
Confidence 87765 55544444555667899999999999998764 455566777888899999999999999999654322
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHH
Q 006010 543 DVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKI 622 (664)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 622 (664)
+...+..+...+.+.|++++|...+++.++ ..|+...+..+... +.+.|++++|...
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~---------------------l~~lG~~deA~~~ 631 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATI---------------------YRQRHNVPAAVSD 631 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHH---------------------HHHCCCHHHHHHH
Confidence 333333444445566999999999999998 67876556555444 9999999999999
Q ss_pred HHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 623 VEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
++++.+. -+.++..+..++..+...|+.++|++.+.+.+
T Consensus 632 l~~AL~l-~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 632 LRAALEL-EPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999985 34467889999999999999999999998865
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=4.1e-23 Score=195.93 Aligned_cols=438 Identities=15% Similarity=0.094 Sum_probs=338.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q 006010 121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIK 200 (664)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~ 200 (664)
...++.-..+.|++++|++.....-.+ .+.+......+-..+.+..+.+.....-....+. .+.-..+|..+..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~----~~q~ae~ysn~aN 124 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK----NPQGAEAYSNLAN 124 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhc----cchHHHHHHHHHH
Confidence 455666667888888888877655333 2223333444455556666666655554444441 2224568888888
Q ss_pred HHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChh
Q 006010 201 TVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFN-VLINGLCKNGELG 279 (664)
Q Consensus 201 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~ 279 (664)
.+...|++++|+..++.+.+.. +.....|..+..++...|+.+.|.+.|.+..+. .|+..... .+...+-..|+++
T Consensus 125 ~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ 201 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLE 201 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccc
Confidence 8888899999999998888774 345778888888999999999999988888775 35544333 2334445578889
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010 280 RAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSME 359 (664)
Q Consensus 280 ~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 359 (664)
+|...+.+.++... --...|+.|...+-..|+...|++.|++.+..+ +.-...|..|.+.|...+.++.|...+.+..
T Consensus 202 ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 202 EAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred hhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 99888888877632 134578888888888999999999999988753 2234678888888888999999999888877
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 006010 360 ERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFT 439 (664)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 439 (664)
...+. ....+..+...|..+|..|.|+..|++.++.... -...|+.+..++-..|++.+|.+.|.+.+... +.-...
T Consensus 280 ~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hada 356 (966)
T KOG4626|consen 280 NLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADA 356 (966)
T ss_pred hcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHH
Confidence 66433 5677788888899999999999999999886322 35689999999999999999999999999874 556778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHH
Q 006010 440 YSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLC 518 (664)
Q Consensus 440 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 518 (664)
.+.|...|...|.+++|..+|....+-. +.-....+.|...|-++|++++|+..+++.++ +.|+ ..+|+.+...|-
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 8999999999999999999999988754 33445788899999999999999999999987 5777 478999999999
Q ss_pred HcCCHHHHHHHHHHhhhcCCCCCCC-HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 006010 519 NAGSVEEALKLFNEMLCLEPKSQPD-VFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT 581 (664)
Q Consensus 519 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 581 (664)
..|+.+.|...+.+++. ..|. ...++.|...|...|+..+|++-+++.++ ++||...
T Consensus 434 e~g~v~~A~q~y~rAI~----~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpd 491 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQ----INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPD 491 (966)
T ss_pred HhhhHHHHHHHHHHHHh----cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCch
Confidence 99999999999999964 3333 34678899999999999999999999997 7888544
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=3e-22 Score=190.16 Aligned_cols=446 Identities=17% Similarity=0.169 Sum_probs=362.1
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 006010 84 STFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNV 163 (664)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (664)
.....+.+...+.|++.+|++.....-..+ +.+......+-..+.+..+++.....-...++. .+.-.++|..+.+.
T Consensus 49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~--~~q~ae~ysn~aN~ 125 (966)
T KOG4626|consen 49 DDRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK--NPQGAEAYSNLANI 125 (966)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc--cchHHHHHHHHHHH
Confidence 346778889999999999998877666554 334445555666677777777655544333332 45567899999999
Q ss_pred HHHcCCHhHHHHHHHHHHhcccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHH-HHHHHHHHHhcC
Q 006010 164 IIQEGLYHRALEFYNHIVNAKHMNILP-NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYT-YCTLMDGLCKEN 241 (664)
Q Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g 241 (664)
+-..|++++|+..|+.+++ ..| ....|..+..++...|+.+.|.+.|.+.++. .|+... .+.+....-..|
T Consensus 126 ~kerg~~~~al~~y~~aie-----l~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIE-----LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HHHhchHHHHHHHHHHHHh-----cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhc
Confidence 9999999999999999988 344 4568999999999999999999999999887 455554 344555566689
Q ss_pred ChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 006010 242 RLDEAVLLLDEMQVDGCFPT-PVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPN-EVTYNTLIHGLCLKGNLDKAVSL 319 (664)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 319 (664)
++.+|...+.+..+. .|. ...|..|.-.+-..|+...|++-|++..+. .|+ ...|..|...|-..+.+++|...
T Consensus 199 rl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 199 RLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred ccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 999999999888775 343 467889999999999999999999999876 343 46888999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006010 320 LDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCK 399 (664)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 399 (664)
|.+..... +.....+..+...|-.+|.++.|+..+++..+..+. -...|+.|..++-..|++.+|...|++.+....
T Consensus 275 Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p- 351 (966)
T KOG4626|consen 275 YLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP- 351 (966)
T ss_pred HHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-
Confidence 99988753 334567778888899999999999999999987654 467899999999999999999999999988643
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010 400 PNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLI 479 (664)
Q Consensus 400 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 479 (664)
......+.|...+...|.+++|..+|....+.. +.-....+.|...|-++|++++|+..+++.+... |.-...|+.+.
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmG 429 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMG 429 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcc
Confidence 256778889999999999999999999998863 4456678999999999999999999999998855 33356899999
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHH
Q 006010 480 HGLCEDGKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNA 553 (664)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 553 (664)
..|-..|+++.|.+.+.+.+.. .|. ....+.|...|-..|++.+|+.-|+++++++|+. +..|..++.+
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf---pdA~cNllh~ 499 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF---PDAYCNLLHC 499 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC---chhhhHHHHH
Confidence 9999999999999999999984 565 4788999999999999999999999998765542 2344444444
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.6e-20 Score=188.03 Aligned_cols=559 Identities=14% Similarity=0.096 Sum_probs=413.0
Q ss_pred hhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006010 63 QPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFH 142 (664)
Q Consensus 63 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 142 (664)
.+.|.+-|....+.. ++|...+..-.......+++..|..+|..++..++.........+..++.+.|+.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 467788888777654 456666666667777889999999999998887776666677778888899999999999999
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHcC---CHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcc
Q 006010 143 TMVDEFHCKRTVKSFNSVLNVIIQEG---LYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMP 219 (664)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 219 (664)
..++. .|.++.++-.|...-.... .+..++..+...-... .-+....+.|...|.-.|++..++.+...+.
T Consensus 224 ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n----~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 224 RALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN----NENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc----CCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 98764 2334555544444433333 3556777777776532 2356678888999999999999999999887
Q ss_pred cCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 006010 220 VRNCE--PDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTP--VTFNVLINGLCKNGELGRAAKLVDNMFLKGCLP 295 (664)
Q Consensus 220 ~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p 295 (664)
..... .-...|-.+.++|...|++++|...|.+..+.. ++. ..+.-+...|.+.|+++.+...|+...... +-
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~ 374 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PN 374 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cc
Confidence 65311 124468889999999999999999999887754 343 345567889999999999999999998773 33
Q ss_pred CHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH----HHcCCCCCH
Q 006010 296 NEVTYNTLIHGLCLKG----NLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSM----EERKFHVNE 367 (664)
Q Consensus 296 ~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~ 367 (664)
+..+..++...|+..+ ..+.|..++.+..+.. +.|...|..+...+-.. +...++..+..+ ...+..+..
T Consensus 375 ~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~ 452 (1018)
T KOG2002|consen 375 NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPP 452 (1018)
T ss_pred hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCH
Confidence 5678888888887765 5677888888877653 55777787777766554 444446665543 345555788
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006010 368 YIYSTLISGLFKEGKAEDAMKLWKQMMEK---GCKPNT------VVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAF 438 (664)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 438 (664)
...|.+...+...|+++.|...|...... ...+|. .+-..+....-..++.+.|.+.|..+++.. |.=+.
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId 531 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYID 531 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHH
Confidence 89999999999999999999999988764 122222 223335555666789999999999999873 22234
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCcCHHhHHHHHHHH
Q 006010 439 TYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG-CKPDVVAYSSMIHGL 517 (664)
Q Consensus 439 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~ 517 (664)
.|..+.......+...+|...+......+ ..++..++.+...+.....+..|.+-|+...+.- ..+|..+...|++.|
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~ 610 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVY 610 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHH
Confidence 44445444445577888999999888765 5677778888888999889988888777665432 236777777777766
Q ss_pred HH------------cCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006010 518 CN------------AGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIF 585 (664)
Q Consensus 518 ~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 585 (664)
.. .+..++|+.+|.+++..+|. |...-|-+.-.++..|++.+|.++|.+..+... -...+|.
T Consensus 611 ~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk---N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~l-- 684 (1018)
T KOG2002|consen 611 IQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK---NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWL-- 684 (1018)
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc---hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceee--
Confidence 43 24578899999999765444 667777888889999999999999999987532 1122222
Q ss_pred HHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc-CCCCChHHHHHHHHHhcccchHHHHHHHHHhh
Q 006010 586 LTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK-FLSPQTSTWERVVQELCRPKRIQAAINKCWSN 661 (664)
Q Consensus 586 l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 661 (664)
+|+.||..+|+|-.|+++|+...++ +-.-++.+...|++++.+.|.+.+|.+.....
T Consensus 685 -------------------Nlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 685 -------------------NLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred -------------------eHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3445599999999999999999887 43457799999999999999999998876553
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.4e-19 Score=181.38 Aligned_cols=553 Identities=13% Similarity=0.072 Sum_probs=341.4
Q ss_pred CCChhHHHHHHhhCCCCC-CCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCC------------------------
Q 006010 60 KSEQPFSDEIFNSTPKLG-SYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKR------------------------ 114 (664)
Q Consensus 60 ~~~~~~a~~~f~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------ 114 (664)
..+.-.|+.+|..+.... ...+++ ...+...+++.|+.+.|...|.++.+.++
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHH
Confidence 456667777776644322 233332 22233445555666665555555555443
Q ss_pred ------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 006010 115 ------------VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHC-KRTVKSFNSVLNVIIQEGLYHRALEFYNHIV 181 (664)
Q Consensus 115 ------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 181 (664)
+.++.+.+.|...|.--|+++.+..+...+....-. ..-..+|..++++|...|++++|...|.+..
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 123334555555555556666666665555432101 0112345566666666666666666666665
Q ss_pred hcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHhCC
Q 006010 182 NAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKEN----RLDEAVLLLDEMQVDG 257 (664)
Q Consensus 182 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~ 257 (664)
+..+.+ -+..+--+...+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+.....
T Consensus 335 k~~~d~---~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 335 KADNDN---FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred ccCCCC---ccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 522111 12233345566666666666666666665542 334455555555555443 3345555555554432
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCC
Q 006010 258 CFPTPVTFNVLINGLCKNGELGRAAKLVDNMF----LKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVAS---KCMP 330 (664)
Q Consensus 258 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~ 330 (664)
+.|...|-.+...+....- ..++..|..+. ..+..+.....|.+...+...|++.+|...|...... ...+
T Consensus 411 -~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 411 -PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred -cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 3345555555555544333 23355554432 3344456667777777777777777777777776654 1122
Q ss_pred Ch------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 006010 331 NE------VTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVV 404 (664)
Q Consensus 331 ~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 404 (664)
|. .+-..+...+-..++.+.|.+.+..+.+..+. -...|-.++......+...+|...++.....+ ..++..
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~a 566 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNA 566 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHH
Confidence 22 12223444455566777777777777765321 22334444433334567778888888877653 336667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHHCCCCCC
Q 006010 405 YSALIDGLCRVGKPDEAEEILFEMINNG-CAANAFTYSSLMKGFFE------------SGKGHKAVEIWKDMAKNNCVYN 471 (664)
Q Consensus 405 ~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~ 471 (664)
++.+...+.....+..|.+-|+...+.- ..+|..+...|.+.|.. .+..++|+++|.++++.. |.|
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN 645 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKN 645 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cch
Confidence 7777778888888888888777766542 23577777777776653 245678999999999877 778
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHH
Q 006010 472 EVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILL 551 (664)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 551 (664)
..+-|.+...++..|++.+|..+|.+..+... ....+|..++++|...|++..|++.|+..++ .....-+......|.
T Consensus 646 ~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk-kf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 646 MYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK-KFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCHHHHHHHH
Confidence 88999999999999999999999999998743 3456899999999999999999999999964 333445777888999
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 552 NALCKQSNISHSIDLLNSMMDRGCDPD--LVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 552 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
+++.+.|.+.+|.+.+..... ..|. ...|+..+-...........-...++.+ ....+..+.|.++|..+...
T Consensus 724 ra~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev---~~a~~~le~a~r~F~~ls~~ 798 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKEALLKARH--LAPSNTSVKFNLALVLKKLAESILRLEKRTLEEV---LEAVKELEEARRLFTELSKN 798 (1018)
T ss_pred HHHHHhhhHHHHHHHHHHHHH--hCCccchHHhHHHHHHHHHHHHHHhcccccHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999887 4444 3445555544333322222222333333 56667788999999999887
Q ss_pred C
Q 006010 630 F 630 (664)
Q Consensus 630 ~ 630 (664)
+
T Consensus 799 ~ 799 (1018)
T KOG2002|consen 799 G 799 (1018)
T ss_pred C
Confidence 4
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=7.6e-20 Score=193.59 Aligned_cols=434 Identities=14% Similarity=0.033 Sum_probs=274.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006010 195 FNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCK 274 (664)
Q Consensus 195 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 274 (664)
+......+.+.|++++|+..|++.+.. .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 334455566666666666666666554 4555666666666666777777777766666543 2244566666666777
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 006010 275 NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARV 354 (664)
Q Consensus 275 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 354 (664)
.|++++|+..|......+...+. ....++..+.. ..+........+.. +.+...+..+.. |...........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 77777776666554433211111 11111111111 12222222222221 122222222222 2111111111111
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010 355 LMSMEERKFHVNEYIYSTLISG---LFKEGKAEDAMKLWKQMMEKG-CKP-NTVVYSALIDGLCRVGKPDEAEEILFEMI 429 (664)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 429 (664)
+....+.... ....+..+... ....+++++|++.|+...+.+ ..| ....+..+...+...|++++|...+++.+
T Consensus 280 ~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 280 LEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111111000 00111111111 123467889999999988764 222 34567777888888999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHh
Q 006010 430 NNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVA 509 (664)
Q Consensus 430 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 509 (664)
+.. +.....+..+...+...|++++|...++.+.+.. +.+...|..+...+...|++++|...|++.++.. +.+...
T Consensus 359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~ 435 (615)
T TIGR00990 359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFS 435 (615)
T ss_pred HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHH
Confidence 874 4456788888889999999999999999988875 5667888889999999999999999999998863 334667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHh
Q 006010 510 YSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV-TCNIFLTA 588 (664)
Q Consensus 510 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~ 588 (664)
+..+..++.+.|++++|+..|++++...+. +...|+.+...+...|++++|+..|++..+ +.|+.. .+..+...
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNFPE---APDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPL 510 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHH
Confidence 888889999999999999999999654333 567888899999999999999999999987 344321 11111111
Q ss_pred hhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 589 LKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 589 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
+ ......+...|++++|.++++++.+.. +.+...+..++..+...|++++|++.|.+.+
T Consensus 511 ~--------------~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 511 I--------------NKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred H--------------HHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 0 000111344699999999999988752 3344678899999999999999999988754
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=9.6e-20 Score=192.83 Aligned_cols=256 Identities=14% Similarity=0.099 Sum_probs=140.6
Q ss_pred CChhHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006010 346 GRAVDGARVLMSMEERK-F-HVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEE 423 (664)
Q Consensus 346 ~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 423 (664)
+++++|.+.|+...+.+ . +.....+..+...+...|++++|+..+++..+.... ....|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666655543 1 113344555555666666666666666666554211 23455555556666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 006010 424 ILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGC 503 (664)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (664)
.|+++++.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++.+...
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 666666553 4445566666666666666666666666666554 3344555556666666666666666666666531
Q ss_pred CcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHh----HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006010 504 KPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVF----TYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL 579 (664)
Q Consensus 504 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 579 (664)
+.+...+..+...+...|++++|+..|++++...+...+... .++.....+...|++++|.+++++..+ +.|+.
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~ 541 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPEC 541 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 223455666666666666666666666666544433211110 111111222334666666666666655 33443
Q ss_pred HH-HHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHH
Q 006010 580 VT-CNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQ 628 (664)
Q Consensus 580 ~~-~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (664)
.. +..+ ++++...|++++|.++|+++.+
T Consensus 542 ~~a~~~l---------------------a~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 542 DIAVATM---------------------AQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHH---------------------HHHHHHccCHHHHHHHHHHHHH
Confidence 32 2222 2236666666666666666655
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=3.8e-20 Score=186.31 Aligned_cols=300 Identities=14% Similarity=0.121 Sum_probs=203.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCh
Q 006010 272 LCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPN---EVTYGTIINGLVKLGRA 348 (664)
Q Consensus 272 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~ 348 (664)
+...|++++|...|+++...+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3444555555555555554421 1334455555555555555555555555554321111 13345555566666666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHH
Q 006010 349 VDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNT----VVYSALIDGLCRVGKPDEAEEI 424 (664)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~ 424 (664)
++|..+|+++.+... .+..++..++..+.+.|++++|++.++.+.+.+..+.. ..+..+...+...|++++|...
T Consensus 124 ~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 666666666655422 24556666666666777777777777766655432221 2344566677778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 006010 425 LFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCK 504 (664)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (664)
++++.+.. +.+...+..+...+.+.|++++|.++++++...+......+++.++.+|...|++++|...++++.+. .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 88887754 44566777788888888889999988888887652222456788889999999999999999999875 4
Q ss_pred cCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHH
Q 006010 505 PDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCK---QSNISHSIDLLNSMMDRGCDPDLV 580 (664)
Q Consensus 505 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 580 (664)
|+...+..++..+.+.|++++|..++++++. ..|+...++.++..+.. .|+.++++.++++|.+.++.|++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~----~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLR----RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 6666678889999999999999999999864 35777788888877664 558899999999999877777665
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=2.9e-20 Score=187.17 Aligned_cols=299 Identities=16% Similarity=0.161 Sum_probs=150.9
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhc
Q 006010 126 KAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRL 205 (664)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 205 (664)
..+...|++++|+..|.++++. .+.+..++..++..+...|++++|..+++.+..............+..+...|.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3345556666666666666543 23344566666666666666666666666665411000000113455556666666
Q ss_pred CChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHH
Q 006010 206 GLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPT----PVTFNVLINGLCKNGELGRA 281 (664)
Q Consensus 206 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a 281 (664)
|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 66666666666665542 33455566666666666666666666666655432211 11233444555555666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010 282 AKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEER 361 (664)
Q Consensus 282 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 361 (664)
...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666555442 11334445555555555555555555555554321111233444455555555555555555554443
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHCC
Q 006010 362 KFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCR---VGKPDEAEEILFEMINNG 432 (664)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~ 432 (664)
. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.+
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 2 22223344445555555555555555554443 3444444444444332 234445555555554433
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=2.2e-18 Score=181.49 Aligned_cols=363 Identities=12% Similarity=0.095 Sum_probs=221.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhc
Q 006010 127 AYGKAHLVEEAIRLFHTMVDEFHCKRT-VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRL 205 (664)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 205 (664)
.+.++.+|+.-.-.|....+......+ ..-...++..+.+.|++++|..+++..+... +-+......++.+....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~----p~~~~~l~~l~~~~l~~ 89 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA----KNGRDLLRRWVISPLAS 89 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC----CCchhHHHHHhhhHhhc
Confidence 345566666666666555443222222 2234455666667777777777777776621 12333444555566667
Q ss_pred CChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006010 206 GLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLV 285 (664)
Q Consensus 206 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 285 (664)
|+++.|.+.|+++.... +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...+
T Consensus 90 g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 77777777777777664 4456667777777777777777777777776642 234556667777777777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 006010 286 DNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHV 365 (664)
Q Consensus 286 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 365 (664)
+.+...... +...+..+ ..+...|++++|...++.+......++...+..+...+...|++++|...++++.+..+.
T Consensus 168 ~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~- 244 (656)
T PRK15174 168 RTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD- 244 (656)
T ss_pred HHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-
Confidence 766555322 22233222 235667777777777777665532233334444455666777777777777777665433
Q ss_pred CHHHHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006010 366 NEYIYSTLISGLFKEGKAED----AMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYS 441 (664)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 441 (664)
+...+..+...+...|++++ |+..+++..+... .+...+..+...+...|++++|...++++++.. +.+...+.
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~ 322 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRA 322 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 45566666677777777664 6666776666532 245566666666777777777777777766653 44455566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 006010 442 SLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSR 501 (664)
Q Consensus 442 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (664)
.+..++.+.|++++|...++.+...+ +.+...+..+..++...|+.++|...|++..+.
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 66666667777777777776666544 122223333455566667777777777666654
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=3.1e-18 Score=180.42 Aligned_cols=363 Identities=12% Similarity=0.106 Sum_probs=288.1
Q ss_pred HHHhCCCcchHHHHHHHHHhCC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCC
Q 006010 92 HYANSGDFKSLEMVLYRMRREK--RVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGL 169 (664)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (664)
.+.+..+++..--.+....+.. .-.+..-...++..+.+.|++++|+.+++..+.. .+.+...+..++.+....|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~ 91 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQ 91 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCC
Confidence 4556666766555555444321 1123334567778888999999999999998776 45556677778888889999
Q ss_pred HhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006010 170 YHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLL 249 (664)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 249 (664)
+++|...|+++....+ .+...+..+...+.+.|++++|...++++.... +.+...+..+...+...|++++|...
T Consensus 92 ~~~A~~~l~~~l~~~P----~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~ 166 (656)
T PRK15174 92 PDAVLQVVNKLLAVNV----CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISL 166 (656)
T ss_pred HHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHH
Confidence 9999999999988322 245578888899999999999999999998874 55678899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 006010 250 LDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCM 329 (664)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 329 (664)
++.+..... .+...+..+ ..+...|++++|...++.+......++...+..+...+...|++++|...++++.+.. +
T Consensus 167 ~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p 243 (656)
T PRK15174 167 ARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-L 243 (656)
T ss_pred HHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 998876542 233344333 3478899999999999998776444455555666778889999999999999999874 4
Q ss_pred CChhhHHHHHHHHHhcCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 006010 330 PNEVTYGTIINGLVKLGRAVD----GARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVY 405 (664)
Q Consensus 330 ~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 405 (664)
.+...+..+...+...|++++ |...+++..+..+. +...+..+...+.+.|++++|+..+++..+.... +...+
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~ 321 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVR 321 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 467778889999999999986 79999999887554 7788999999999999999999999999987533 56677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006010 406 SALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNN 467 (664)
Q Consensus 406 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 467 (664)
..+..++...|++++|...++.+...+ +.+...+..+..++...|+.++|...|++..+..
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 788899999999999999999999864 3333445556778899999999999999998865
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=2.8e-18 Score=184.88 Aligned_cols=406 Identities=13% Similarity=0.069 Sum_probs=246.6
Q ss_pred CCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHH
Q 006010 80 QLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNS 159 (664)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 159 (664)
+.++.-..-.+......|+.++|..++..+.... +.+...+..++..+...|++++|+++|++.+.. .+.+...+..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 4466666777888899999999999999988633 445667888999999999999999999998765 4556777888
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHh
Q 006010 160 VLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK 239 (664)
Q Consensus 160 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (664)
++..+...|++++|+..++++.+. .+.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++..
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~----~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSG----APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh----CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 889999999999999999999872 222444 7778888889999999999999998875 4566777778888888
Q ss_pred cCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCh---hHHHHHHHHHHHc-CCCCCHH-HH---
Q 006010 240 ENRLDEAVLLLDEMQVDGCFPTP------VTFNVLINGLC-----KNGEL---GRAAKLVDNMFLK-GCLPNEV-TY--- 300 (664)
Q Consensus 240 ~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~~~~~-g~~p~~~-~~--- 300 (664)
.|..+.|++.++.+.. .|+. .....++.... ..+++ ++|++.++.+... ...|+.. .+
T Consensus 163 ~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 163 NRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred CCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 8999999988876654 2321 01111222221 11223 5566666666543 1122211 11
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHH
Q 006010 301 -NTLIHGLCLKGNLDKAVSLLDRMVASKCM-PNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHV---NEYIYSTLIS 375 (664)
Q Consensus 301 -~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~ 375 (664)
...+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|...++++.+..... .......+..
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 11123344557777777777777665421 211 11223556667777777777777765543211 1233444555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006010 376 GLFKEGKAEDAMKLWKQMMEKGC-----------KPN---TVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYS 441 (664)
Q Consensus 376 ~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 441 (664)
++.+.|++++|..+++.+..... .|+ ...+..+...+...|+.++|++.++++.... |.+...+.
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~ 397 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRI 397 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 66667777777777776665421 011 1122333444444555555555555554432 33444444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 006010 442 SLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLS 500 (664)
Q Consensus 442 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (664)
.+...+...|++++|++.+++..... |.+...+...+..+...|++++|..+++++++
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55555555555555555555544433 22333344444444445555555555555544
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=6e-17 Score=170.75 Aligned_cols=453 Identities=10% Similarity=0.033 Sum_probs=261.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHH
Q 006010 119 KSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTV-KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNL 197 (664)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 197 (664)
.....-+....+.|+++.|+..|++.++ ..|+. .....++..+...|+.++|+..+++... . ..........
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~---~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~---p-~n~~~~~lla 107 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESK---AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS---S-MNISSRGLAS 107 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHh---hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc---C-CCCCHHHHHH
Confidence 3444444556788999999999988854 55553 2233788888888999999999988863 1 1112333334
Q ss_pred HHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006010 198 VIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGE 277 (664)
Q Consensus 198 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 277 (664)
+...+...|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcch
Confidence 4567778899999999999998875 455777778888888899999999999888775 4565555445444545666
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 006010 278 LGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMS 357 (664)
Q Consensus 278 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 357 (664)
..+|++.++++.+.. +-+...+..+..+..+.|-...|.++.++- |+..+-...... +.+.+.+....
T Consensus 185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~ 252 (822)
T PRK14574 185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRM 252 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhh
Confidence 666899999988874 225667778888888888888888776653 222211111100 00111111100
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCH-HHH-H---HHHHHHHhcCChhHHHHHHHHHHHC
Q 006010 358 MEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEK-GCKPNT-VVY-S---ALIDGLCRVGKPDEAEEILFEMINN 431 (664)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-~~~-~---~li~~~~~~~~~~~a~~~~~~~~~~ 431 (664)
+..++..- . . +---.+.|+.-++.+... +..|.. ..| . -.+-++...|+..++++.|+.+...
T Consensus 253 ----a~~~~~~~-~---~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~ 321 (822)
T PRK14574 253 ----AVLPTRSE-T---E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE 321 (822)
T ss_pred ----cccccccc-h---h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence 00000000 0 0 000123333333333331 111111 111 1 1223445556666666666666655
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC----
Q 006010 432 GCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNC-----VYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG---- 502 (664)
Q Consensus 432 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---- 502 (664)
+.+....+-..+.++|...+++++|..+++.+..... +++......|..++...+++++|..+++.+.+..
T Consensus 322 ~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~ 401 (822)
T PRK14574 322 GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQV 401 (822)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEE
Confidence 5444445556666666666666666666666544321 1223334555666666666666666666665521
Q ss_pred ---------CCcCH-HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 503 ---------CKPDV-VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 503 ---------~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
..||- ..+..++..+...|+..+|++.+++++...|+ |...+..+...+...|.+.+|.+.++.+..
T Consensus 402 ~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~---n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 402 GVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA---NQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred eccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 11121 22334455566677777777777777655555 666666667777777777777777765554
Q ss_pred CCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 573 RGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 573 ~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
+.|+.......... ++...|+|.+|.++.+.+.+.
T Consensus 479 --l~P~~~~~~~~~~~--------------------~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 479 --LAPRSLILERAQAE--------------------TAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred --hCCccHHHHHHHHH--------------------HHHhhhhHHHHHHHHHHHHhh
Confidence 45554433222221 156667777777777766653
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1.6e-17 Score=179.04 Aligned_cols=431 Identities=14% Similarity=0.051 Sum_probs=252.7
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHH
Q 006010 115 VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLT 194 (664)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 194 (664)
+.+.....-.+.+....|+.++|++++...... .+.+...+..++..+...|++++|..+|+++++.. +.+...
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~----P~~~~a 85 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE----PQNDDY 85 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHH
Confidence 456666777788888999999999999988542 35566678999999999999999999999988721 234556
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006010 195 FNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCK 274 (664)
Q Consensus 195 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 274 (664)
+..+..++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++..
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 7788888899999999999999998774 55666 8888889999999999999999998864 3355666677888888
Q ss_pred cCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh-----cCCh---HHHHHHHHHHHHC-CCCCChh-hHH--
Q 006010 275 NGELGRAAKLVDNMFLKGCLPNE------VTYNTLIHGLCL-----KGNL---DKAVSLLDRMVAS-KCMPNEV-TYG-- 336 (664)
Q Consensus 275 ~g~~~~a~~~~~~~~~~g~~p~~------~~~~~l~~~~~~-----~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~-- 336 (664)
.|..+.|+..++.... .|+. .....++..... .+++ ++|++.++.+.+. ...|+.. .+.
T Consensus 163 ~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 163 NRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred CCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 8999999988876543 2221 011111221111 1122 4455555555532 1111111 010
Q ss_pred --HHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHH
Q 006010 337 --TIINGLVKLGRAVDGARVLMSMEERKFH-VNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKP---NTVVYSALID 410 (664)
Q Consensus 337 --~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~ 410 (664)
..+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.+..... .......+..
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 0012233445555555555555544321 111 11113444555555555555555544332110 0122333333
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcCCC
Q 006010 411 GLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYN---EVCYSVLIHGLCEDGK 487 (664)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 487 (664)
++...|++++|..+++.+.... ++....+.. ....|+ ...+..+...+...|+
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~~-----------------------~~~~p~~~~~~a~~~~a~~l~~~g~ 374 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNS-PPFLRLYGS-----------------------PTSIPNDDWLQGQSLLSQVAKYSND 374 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcC-CceEeecCC-----------------------CCCCCCchHHHHHHHHHHHHHHcCC
Confidence 4445555555555555544431 110000000 000122 1234445556666677
Q ss_pred hHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 006010 488 LREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLL 567 (664)
Q Consensus 488 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 567 (664)
.++|+++++++.... +.+...+..++..+...|++++|++.+++++...|. +...+...+..+.+.|++++|..++
T Consensus 375 ~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd---~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 375 LPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR---NINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 777777777766542 333456666666677777777777777777543333 3445555555666677777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHh
Q 006010 568 NSMMDRGCDPDLVTCNIFLTA 588 (664)
Q Consensus 568 ~~~~~~~~~p~~~~~~~ll~~ 588 (664)
+++++ ..|+......+-..
T Consensus 451 ~~ll~--~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 451 DDVVA--REPQDPGVQRLARA 469 (765)
T ss_pred HHHHH--hCCCCHHHHHHHHH
Confidence 77776 45555544444333
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=6.9e-17 Score=170.26 Aligned_cols=462 Identities=14% Similarity=0.086 Sum_probs=303.3
Q ss_pred ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 006010 82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVL 161 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 161 (664)
.+.+...-+....+.|++..|...|+++.+..+.....++ .++..+...|+.++|+..+++... ..+........++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA 109 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAA 109 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHH
Confidence 4455666677889999999999999999988765433344 888888899999999999999862 2344455556667
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcC
Q 006010 162 NVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKEN 241 (664)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 241 (664)
..+...|++++|+++|+++.+..+ -+...+..++..+...++.++|++.++.+... .|+...+..++..+...+
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP----~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDP----TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence 789999999999999999998332 23456667788899999999999999999887 456566655555555567
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006010 242 RLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLD 321 (664)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 321 (664)
+..+|++.++++.+.. +.+...+..+..++.+.|-...|.++..+-... .. ...+..+ +.+.|-+..+
T Consensus 184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~--~~~~~~l--------~~~~~a~~vr 251 (822)
T PRK14574 184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VS--AEHYRQL--------ERDAAAEQVR 251 (822)
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cC--HHHHHHH--------HHHHHHHHHh
Confidence 7767999999999874 346778888899999999999999877763221 11 1111111 0111222211
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC-CHHH----HHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010 322 RMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEER-KFHV-NEYI----YSTLISGLFKEGKAEDAMKLWKQMME 395 (664)
Q Consensus 322 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~ 395 (664)
... .++..- -. +.--.+.|+.-++.+... +..| .... ..-.+.++...|++.+++..|+.+..
T Consensus 252 ~a~----~~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 252 MAV----LPTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred hcc----cccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 111 111000 00 000123333333333331 1111 1111 12234456667777777777777777
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--
Q 006010 396 KGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNG-----CAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNC-- 468 (664)
Q Consensus 396 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 468 (664)
.+.+....+-..+.++|...+++++|+.++..+.... .+++......|.-+|...+++++|..+++.+.+...
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 6655455566777777777777777777777776542 122333446677777777777777777777766321
Q ss_pred ---------CC--CH-HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhc
Q 006010 469 ---------VY--NE-VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCL 536 (664)
Q Consensus 469 ---------~~--~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (664)
.| |- ..+..++..+...|+..+|.+.++++.... +-|......+...+...|.+.+|+..++.+...
T Consensus 401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 01 11 123445666778888888888888887653 446677778888888888888888888776544
Q ss_pred CCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 006010 537 EPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT 581 (664)
Q Consensus 537 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 581 (664)
.|. +.......+.++...|++.+|..+.++..+ ..|+...
T Consensus 480 ~P~---~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~ 519 (822)
T PRK14574 480 APR---SLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIP 519 (822)
T ss_pred CCc---cHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchh
Confidence 333 455566677777788888888888888776 4565543
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=3.6e-18 Score=156.76 Aligned_cols=486 Identities=12% Similarity=0.064 Sum_probs=309.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC--HHHH
Q 006010 118 EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN--TLTF 195 (664)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~ 195 (664)
-.++..+...|....++.+|+..|+-+++..-++.....-..+.+.+.+..++.+|+++|+..+.--+ .+..+ ....
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvp-sink~~rikil 279 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVP-SINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcc-ccchhhHHHHH
Confidence 34566778888888999999999998866444444444445567788889999999999998876211 11111 2355
Q ss_pred HHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC------------CHH
Q 006010 196 NLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFP------------TPV 263 (664)
Q Consensus 196 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------------~~~ 263 (664)
+.+...+.+.|+++.|+..|+...+. .|+..+-..|+-++.--|+-++..+.|.+|......+ +..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 66666788999999999999998877 5777766666667777899999999999987643333 333
Q ss_pred HHHHHHHH-----HHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH
Q 006010 264 TFNVLING-----LCKNGE--LGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYG 336 (664)
Q Consensus 264 ~~~~li~~-----~~~~g~--~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 336 (664)
..+..|.. .-+.+. -++++-.--+++.--+.|+-. .| .+-+.+.++.-.-..+..+. -.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~g-~dwcle~lk~s~~~~la~dl--ei 423 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------AG-CDWCLESLKASQHAELAIDL--EI 423 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------cc-cHHHHHHHHHhhhhhhhhhh--hh
Confidence 33322211 111110 111111111111111111110 01 12222222221111000010 01
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010 337 TIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFK--EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCR 414 (664)
Q Consensus 337 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 414 (664)
.-...+.+.|+++.|.+++.-+.+..-......-+.|-..+.- -.++.+|...-+...... .-+......-......
T Consensus 424 ~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 424 NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFA 502 (840)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeee
Confidence 1123467889999999988888776443333333333322222 334666666665554321 1122222222223345
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 006010 415 VGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMV 494 (664)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 494 (664)
.|++++|.+.+++.+...-. .......+.-.+...|+.++|++.|-.+...- ..+..+...+...|....+..+|+++
T Consensus 503 ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 78899999999998876321 22222233345677889999998887765422 24666777788888888899999999
Q ss_pred HHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006010 495 WTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRG 574 (664)
Q Consensus 495 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 574 (664)
+-+.... ++.|+.++..|...|-+.|+-.+|.+.+-+-- .-.+-|..+...|...|....-+++|+..|++..-
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy---ryfp~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY---RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc---cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 8877664 45567788889999999999999888775542 22444777888888888888888999999988875
Q ss_pred CCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccch
Q 006010 575 CDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKR 650 (664)
Q Consensus 575 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 650 (664)
+.|+...|..++..| +.+.|++..|.++++...++ ++.+..+...|++.+...|-
T Consensus 655 iqp~~~kwqlmiasc--------------------~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASC--------------------FRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHH--------------------HHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 789999999888887 88899999999999998876 77788899999888887774
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=2.1e-17 Score=151.75 Aligned_cols=482 Identities=13% Similarity=0.102 Sum_probs=316.9
Q ss_pred CCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhhcCCC-C--CCH
Q 006010 79 YQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSF-IFIFKAYGKAHLVEEAIRLFHTMVDEFHC-K--RTV 154 (664)
Q Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~--~~~ 154 (664)
...+..++..+.+.|..+....+|...|+-+++...-++...+ ..+...+.+...+..|++.|+..+...+. . -.+
T Consensus 197 ldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~ri 276 (840)
T KOG2003|consen 197 LDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRI 276 (840)
T ss_pred ccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHH
Confidence 3445667778888999999999999999999877554444332 35667788899999999999987764221 1 124
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHH-----
Q 006010 155 KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYT----- 229 (664)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----- 229 (664)
...+.+...+++.|+++.|+.-|+...+ ..|+..+-..++-++...|+.++..+.|..|...-..+|..-
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~-----~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ 351 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCME-----EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEK 351 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHH-----hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCc
Confidence 5677788889999999999999999977 457877655566666778999999999999876433333221
Q ss_pred ---HHHHHHHHHhcCChh--------HHHHHHHH---HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 006010 230 ---YCTLMDGLCKENRLD--------EAVLLLDE---MQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLP 295 (664)
Q Consensus 230 ---~~~l~~~~~~~g~~~--------~a~~~~~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p 295 (664)
-..|+.-..+...+. .|.+..-. +...-+.|+- ..| .+-+++.++.-....+..
T Consensus 352 ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f-----------a~g-~dwcle~lk~s~~~~la~ 419 (840)
T KOG2003|consen 352 DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF-----------AAG-CDWCLESLKASQHAELAI 419 (840)
T ss_pred CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch-----------hcc-cHHHHHHHHHhhhhhhhh
Confidence 112222222221111 11111111 1111011110 001 222333333222111111
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006010 296 NEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLV--KLGRAVDGARVLMSMEERKFHVNEYIYSTL 373 (664)
Q Consensus 296 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 373 (664)
+.. ..-...+.+.|+++.|.++++-+.+..-+.....-+.|...+. -..++.+|...-+.......- +......-
T Consensus 420 dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nk 496 (840)
T KOG2003|consen 420 DLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNK 496 (840)
T ss_pred hhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcC
Confidence 111 1122356789999999999998876643322222232222222 234677777776666543211 22333333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006010 374 ISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKG 453 (664)
Q Consensus 374 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 453 (664)
......+|++++|.+.|++.+..... ....+-.+.-.+-..|+.++|++.|-++... +..+..+...+...|....+.
T Consensus 497 gn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCH
Confidence 33445689999999999999875322 2222333344567789999999998877543 234778888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHh
Q 006010 454 HKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEM 533 (664)
Q Consensus 454 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (664)
.+|++++.+.... +|.|+...+.|...|-+.|+-.+|.+.+-+--.. ++-+..+...|...|....-.++|+.+|+++
T Consensus 575 aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 575 AQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999877653 4678889999999999999999999987765543 4556778888888899999999999999987
Q ss_pred hhcCCCCCCCHhHHHHHHHH-HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 006010 534 LCLEPKSQPDVFTYNILLNA-LCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTAL 589 (664)
Q Consensus 534 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 589 (664)
- -++|+..-|..++.. +.+.|++.+|+++++..... .+-|......+++.|
T Consensus 653 a----liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~ 704 (840)
T KOG2003|consen 653 A----LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIA 704 (840)
T ss_pred H----hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHh
Confidence 3 378999999988855 56799999999999998863 455556666666653
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=8.2e-15 Score=146.76 Aligned_cols=566 Identities=13% Similarity=0.104 Sum_probs=307.7
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 006010 84 STFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNV 163 (664)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (664)
.......+.+...|++++|..++..+++.. +....+|..|..+|-..|+.++++..+-.+ .+-.+.|...|..+...
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHH
Confidence 344445566667788888888888888876 446678888888888888888888876544 33356677888888888
Q ss_pred HHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHH----HHHHHHh
Q 006010 164 IIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCT----LMDGLCK 239 (664)
Q Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~ 239 (664)
..+.|++.+|.-+|.++++.. +++...+-.-+..|-+.|+...|...|.++.....+.|..-+.. .++.+..
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~----p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQAN----PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 888888888888888888732 23444555566778888888888888888877753233333333 3455666
Q ss_pred cCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC------------------------
Q 006010 240 ENRLDEAVLLLDEMQVDG-CFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCL------------------------ 294 (664)
Q Consensus 240 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~------------------------ 294 (664)
.++-+.|.+.++.....+ -.-+...++.++..+.+...++.|......+......
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 777788888777766521 2234456677777777777777777777666551111
Q ss_pred ---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 006010 295 ---PNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASK--CMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYI 369 (664)
Q Consensus 295 ---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 369 (664)
++...+ -++-++......+....+...+.... +.-+...|..+..+|...|++.+|..++..+......-+...
T Consensus 373 ~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 373 ELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 111110 11112222222233333333333332 122334444455555555555555555555544433334445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--------HCCCCCCHHHHH
Q 006010 370 YSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMI--------NNGCAANAFTYS 441 (664)
Q Consensus 370 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~ 441 (664)
|-.+..+|...|.++.|++.|+..+.... .+...-..|-..+.+.|++++|.+.++.+. ..+..|+.....
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 55555555555555555555555544311 122223333334444555555555544421 112233333222
Q ss_pred HHHHHHHhcCChHHHHHHHHHH----------------------------------------------------------
Q 006010 442 SLMKGFFESGKGHKAVEIWKDM---------------------------------------------------------- 463 (664)
Q Consensus 442 ~l~~~~~~~~~~~~a~~~~~~~---------------------------------------------------------- 463 (664)
...+.+...|+.++-+.+-..|
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~ 610 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGT 610 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchh
Confidence 2222233333222211111000
Q ss_pred -----HHCCCCCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHhCCC--CcCH---HhHHHHHHHHHHcCCHHHHHHHHH
Q 006010 464 -----AKNNCVYNE--VCYSVLIHGLCEDGKLREARMVWTQMLSRGC--KPDV---VAYSSMIHGLCNAGSVEEALKLFN 531 (664)
Q Consensus 464 -----~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~---~~~~~l~~~~~~~g~~~~A~~~~~ 531 (664)
...+...+. ..+..++..+++.+++++|+.+...+..... .++. ..-...+.+.+..+++..|...++
T Consensus 611 ~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR 690 (895)
T KOG2076|consen 611 EFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLR 690 (895)
T ss_pred hhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 000100011 2345566677777777777777776665421 1221 112334455566777777777777
Q ss_pred HhhhcCC-CCCC-CHhHHHHHHHHH-----------------------------------HHcCChhHHHHHHHHHHHCC
Q 006010 532 EMLCLEP-KSQP-DVFTYNILLNAL-----------------------------------CKQSNISHSIDLLNSMMDRG 574 (664)
Q Consensus 532 ~~~~~~~-~~~~-~~~~~~~l~~~~-----------------------------------~~~g~~~~A~~~~~~~~~~~ 574 (664)
.++.... ...| -...|+..++.. ...+.+..|+..+-++..
T Consensus 691 ~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~-- 768 (895)
T KOG2076|consen 691 SVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR-- 768 (895)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH--
Confidence 6653200 0011 122333222221 224556667776666655
Q ss_pred CCCCHHHHHHHHHhhhhhcc--------------------------CCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHH
Q 006010 575 CDPDLVTCNIFLTALKEKLE--------------------------APQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQ 628 (664)
Q Consensus 575 ~~p~~~~~~~ll~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (664)
..||....+..+...-.+.. .+.+..+.+=+||.+|-..|-..-|..+++++++
T Consensus 769 ~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 769 QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 56665544444433211110 0111122233788999999999999999999987
Q ss_pred cCCCC-------------ChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 629 KFLSP-------------QTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 629 ~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
. +| -...-..|.-.|...|+.+.|.+++.+-+
T Consensus 849 ~--~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 849 V--SPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred C--CccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhc
Confidence 4 22 12334556678899999999998876643
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=7.4e-15 Score=147.11 Aligned_cols=499 Identities=15% Similarity=0.067 Sum_probs=345.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHH
Q 006010 122 IFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKT 201 (664)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 201 (664)
...+......|++++|.+++.++++. .+.....|..|...|-+.|+.+++...+-.+..- .+-|...|..+...
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL----~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL----NPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCChHHHHHHHHH
Confidence 33444455569999999999999887 5677889999999999999999999988777541 22356789999999
Q ss_pred HHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCC
Q 006010 202 VCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVT----FNVLINGLCKNGE 277 (664)
Q Consensus 202 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~ 277 (664)
..+.|.+++|.-.|.+.++.. +++...+-.-+..|-+.|+...|..-|.++.....+.|..- ....++.+...++
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999886 66666666778889999999999999999988643222222 2334566777888
Q ss_pred hhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---------------------------CCCC
Q 006010 278 LGRAAKLVDNMFLK-GCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVA---------------------------SKCM 329 (664)
Q Consensus 278 ~~~a~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------------------~~~~ 329 (664)
-+.|.+.++..... +-..+...+++++..+.+...++.+......... .++.
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 89999999988773 2233556788889999999999999888877765 1233
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 006010 330 PNEVTYGTIINGLVKLGRAVDGARVLMSMEERK--FHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSA 407 (664)
Q Consensus 330 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 407 (664)
++..++. +.-++......+....+.....+.. +.-+...|..+..+|.+.|++..|+.+|..+......-+...|-.
T Consensus 376 ~~l~v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 376 YDLRVIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred ccchhHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 4444422 2334555555555555666666655 444677899999999999999999999999998766667889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--------CCCCCCHHHHHHHH
Q 006010 408 LIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAK--------NNCVYNEVCYSVLI 479 (664)
Q Consensus 408 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~ 479 (664)
+..+|...|..++|.+.|+.++... |.+...-..|...+.+.|+.++|.+.+..+.. ....|+........
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 9999999999999999999999874 55677778888899999999999999988432 23445544444444
Q ss_pred HHHHcCCChHHHHHHHHHHHhC----------------------------------------------------------
Q 006010 480 HGLCEDGKLREARMVWTQMLSR---------------------------------------------------------- 501 (664)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~---------------------------------------------------------- 501 (664)
..+...|+.++-..+...|+..
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 4555555544432222221110
Q ss_pred -----CCCcCH--HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCH---hHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010 502 -----GCKPDV--VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDV---FTYNILLNALCKQSNISHSIDLLNSMM 571 (664)
Q Consensus 502 -----~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 571 (664)
|+..+. ..+.-++..+++.+++++|..+...++....-..++. ..-...+.+.+..+++..|...++.|.
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 000010 1224466678899999999999988854332222222 123345566778899999999999998
Q ss_pred HC-C--CCCCHH-HHHHHHHhhhhhcc--------------CCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 572 DR-G--CDPDLV-TCNIFLTALKEKLE--------------APQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 572 ~~-~--~~p~~~-~~~~ll~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
.. + ..|... .|+..++.+...+. .++......--.|..+...+.+..|...+-++...
T Consensus 694 ~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~ 769 (895)
T KOG2076|consen 694 TQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ 769 (895)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh
Confidence 53 1 122222 23322222221111 12221222112334466777888888887777764
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=1.1e-13 Score=133.49 Aligned_cols=479 Identities=14% Similarity=0.077 Sum_probs=286.3
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChh
Q 006010 130 KAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVD 209 (664)
Q Consensus 130 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 209 (664)
.....++|+.++.+..+- ++.+...|.++ .+..-|+.|..+++++.+ .++-+...|......--.+|+.+
T Consensus 388 elE~~~darilL~rAvec--cp~s~dLwlAl----arLetYenAkkvLNkaRe----~iptd~~IWitaa~LEE~ngn~~ 457 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVEC--CPQSMDLWLAL----ARLETYENAKKVLNKARE----IIPTDREIWITAAKLEEANGNVD 457 (913)
T ss_pred hccChHHHHHHHHHHHHh--ccchHHHHHHH----HHHHHHHHHHHHHHHHHh----hCCCChhHHHHHHHHHHhcCCHH
Confidence 334455566666666543 44455555444 333445666777666655 34445566666665566667666
Q ss_pred HHHHHHhhc----ccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHH
Q 006010 210 NAIQLFREM----PVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPT--PVTFNVLINGLCKNGELGRAAK 283 (664)
Q Consensus 210 ~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~ 283 (664)
...+++++. ...|+..+...|..=...|-..|..-.+..+.......|+.-. ..||..-...|.+.+.++-|..
T Consensus 458 mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 458 MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARA 537 (913)
T ss_pred HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHH
Confidence 666666543 3445666666666666666666666666666666665554422 3466666666777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006010 284 LVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKF 363 (664)
Q Consensus 284 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 363 (664)
+|...++.- +-+...|......--..|..+.-..++++++.. ++-....|.....-+-..|+...|..++.++.+..+
T Consensus 538 Vya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p 615 (913)
T KOG0495|consen 538 VYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP 615 (913)
T ss_pred HHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Confidence 776665542 224455555555555566677777777777665 233455566666666666777777777777666654
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006010 364 HVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSL 443 (664)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 443 (664)
. +...|-.-+.....+..++.|..+|.+.... .|+...|.--+....-.++.++|.+++++.++. ++.-...|..+
T Consensus 616 n-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lml 691 (913)
T KOG0495|consen 616 N-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLML 691 (913)
T ss_pred C-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHH
Confidence 4 5666666666666777777777777766653 344555554444455556677777777776665 23344556666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCH
Q 006010 444 MKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSV 523 (664)
Q Consensus 444 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 523 (664)
...+.+.++++.|.+.|..-.+. +|.....|-.+...--+.|.+-+|..+++...-.+ +-+...|...+.+-.+.|+.
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNK 769 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCH
Confidence 66666677777777666655443 24455566666666666667777777777666543 33456666777777777777
Q ss_pred HHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhh
Q 006010 524 EEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFL 603 (664)
Q Consensus 524 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 603 (664)
+.|..+..++++.-|+ +...|..-|...-+.++-..+.+.+++. .-|+.....
T Consensus 770 ~~a~~lmakALQecp~---sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVlla------------------- 822 (913)
T KOG0495|consen 770 EQAELLMAKALQECPS---SGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLA------------------- 822 (913)
T ss_pred HHHHHHHHHHHHhCCc---cchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHH-------------------
Confidence 7777777666532222 3445555555444444444444433332 223222222
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHHcCCCCC-hHHHHHHHHHhcccchHHHHHHH
Q 006010 604 NELAIRLFKRQRTSGGFKIVEVMLQKFLSPQ-TSTWERVVQELCRPKRIQAAINK 657 (664)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 657 (664)
++..+.....++.|.+.|.+.++. .|| -..|..+..-+.++|.-++-.++
T Consensus 823 --ia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev 873 (913)
T KOG0495|consen 823 --IAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEV 873 (913)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHH
Confidence 223367777888888888888874 343 37777777777888855444443
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=9.1e-14 Score=134.02 Aligned_cols=516 Identities=11% Similarity=0.050 Sum_probs=330.9
Q ss_pred CCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHH--------------
Q 006010 97 GDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLN-------------- 162 (664)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~-------------- 162 (664)
++...|+.++....+.++. .+..|..-++.--..|.+..|..+..+-.+. ++.+...|.--++
T Consensus 265 ~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~--cprSeDvWLeaiRLhp~d~aK~vvA~A 341 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEE--CPRSEDVWLEAIRLHPPDVAKTVVANA 341 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh--CCchHHHHHHHHhcCChHHHHHHHHHH
Confidence 4567788888888877644 4556777776666777777777776665444 4444444433222
Q ss_pred ---------HHHHcC----CHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHH
Q 006010 163 ---------VIIQEG----LYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYT 229 (664)
Q Consensus 163 ---------~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 229 (664)
.+++.- +...=..++++.++ .++.++..|. +.....+.+.|+-++....+-- +.+...
T Consensus 342 vr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe----~iP~sv~LWK----aAVelE~~~darilL~rAvecc-p~s~dL 412 (913)
T KOG0495|consen 342 VRFLPTSVRLWLKAADLESDTKNKKRVLRKALE----HIPRSVRLWK----AAVELEEPEDARILLERAVECC-PQSMDL 412 (913)
T ss_pred HHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHH----hCCchHHHHH----HHHhccChHHHHHHHHHHHHhc-cchHHH
Confidence 111111 11222334444444 1333333443 3445566677888887776652 444444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----HHcCCCCCHHHHHHHHH
Q 006010 230 YCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM----FLKGCLPNEVTYNTLIH 305 (664)
Q Consensus 230 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~g~~p~~~~~~~l~~ 305 (664)
|. +|.+...++.|.++++...+. ++.+...|.+-...--.+|+.+...+++++. ...|+..+...|..=..
T Consensus 413 wl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe 487 (913)
T KOG0495|consen 413 WL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE 487 (913)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence 44 445566778888888888764 6667788887777777888888888777654 34577778888877777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006010 306 GLCLKGNLDKAVSLLDRMVASKCMP--NEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKA 383 (664)
Q Consensus 306 ~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (664)
.|-..|.+--+..+....+..|+.. -..||..-.+.|.+.+.++-+..+|....+--+. +...|......--..|..
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTR 566 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcH
Confidence 7777888888888877777666443 2356777777788888888888888777765332 566777666666677777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006010 384 EDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDM 463 (664)
Q Consensus 384 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 463 (664)
+....++++....- +-....|.....-+-..|+...|..++..+.+.. +.+...|.+-+..-....+++.|..+|.+.
T Consensus 567 Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 567 ESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred HHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 77777887777652 2244455555555666788888888887777764 446677777777777777888888888777
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCC
Q 006010 464 AKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQP 542 (664)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 542 (664)
.... ++...|.--+...-..++.++|++++++.++. -|+ ...|..+.+.+.+.++++.|...|..-++.-|+
T Consensus 645 r~~s--gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~--- 717 (913)
T KOG0495|consen 645 RSIS--GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN--- 717 (913)
T ss_pred hccC--CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC---
Confidence 6644 66666666666666677778888888777764 344 456777777777777777777777766432222
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHH
Q 006010 543 DVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD-LVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFK 621 (664)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 621 (664)
....|-.+...--+.|.+-.|..++++..-. .|+ ...|...++. -.+.|..+.|..
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~---------------------ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRM---------------------ELRAGNKEQAEL 774 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHH---------------------HHHcCCHHHHHH
Confidence 3445666666666777777777777777652 333 3344444444 444555555555
Q ss_pred HHHHHHHc-----------------------------CCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 622 IVEVMLQK-----------------------------FLSPQTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 622 ~~~~~~~~-----------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
++.++++. ...-|+.+...+...+....+++.|.++|.+.+
T Consensus 775 lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 775 LMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444443 023355556666666666666777776666543
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=7.5e-14 Score=129.52 Aligned_cols=490 Identities=12% Similarity=0.059 Sum_probs=360.0
Q ss_pred CChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 006010 81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSV 160 (664)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 160 (664)
.+...|....+--...+++..|+.+|++++..+ ..+...|...+.+-.++..+..|..+++..+.. .|.-...|...
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY 147 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHH
Confidence 345566666677777888999999999999765 456778999999999999999999999998764 33334567777
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhc
Q 006010 161 LNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKE 240 (664)
Q Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (664)
+.+--..|+...|.++|+...+ ..|+...|++.+..-.+.+.++.|..+++...-. .|++..|.-....=.+.
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~-----w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWME-----WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKH 220 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhc
Confidence 7777778999999999999976 7899999999999999999999999999998766 58999999999999999
Q ss_pred CChhHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHH
Q 006010 241 NRLDEAVLLLDEMQVD-G-CFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPN--EVTYNTLIHGLCLKGNLDKA 316 (664)
Q Consensus 241 g~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a 316 (664)
|....|..+|+...+. | -.-+...+.+....-.++..++.|.-+|+-.+..= +.+ ...|......--+-|+....
T Consensus 221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gI 299 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGI 299 (677)
T ss_pred CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhh
Confidence 9999999999987653 1 01123455566666667788999999998887762 222 34455554444455654443
Q ss_pred HHH--------HHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHH--------HHHHh
Q 006010 317 VSL--------LDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNE-YIYSTLI--------SGLFK 379 (664)
Q Consensus 317 ~~~--------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~--------~~~~~ 379 (664)
.+. |+.+++.+ +.|-.+|-..++.--..|+.+...++++.....-++... ..|...+ -.-..
T Consensus 300 Ed~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle 378 (677)
T KOG1915|consen 300 EDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELE 378 (677)
T ss_pred HHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 34444443 567788888888888889999999999998876433221 1122111 12235
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006010 380 EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGL----CRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHK 455 (664)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 455 (664)
..+++.+.++|+..++. ++....|+..+--.| .+..++..|.+++..++. ..|...+|...|..-.+.++++.
T Consensus 379 ~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDR 455 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDR 455 (677)
T ss_pred hhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHH
Confidence 78899999999999884 444556665554443 567899999999999885 47888999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC-CcCHHhHHHHHHHHHHcCCHHHHHHHHHHhh
Q 006010 456 AVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGC-KPDVVAYSSMIHGLCNAGSVEEALKLFNEML 534 (664)
Q Consensus 456 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (664)
+..++++.+.-+ |.+..+|......-...|+.+.|..+|+-+++... ......|...|..-...|.++.|..+|++.+
T Consensus 456 cRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 456 CRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 999999999977 66778888888888889999999999999987531 1123466777777788999999999999996
Q ss_pred hcCCCCCCCHhHHHHHHHHHH-----HcC-----------ChhHHHHHHHHHHHC--CCCCCHHHHHHHHHhhhh
Q 006010 535 CLEPKSQPDVFTYNILLNALC-----KQS-----------NISHSIDLLNSMMDR--GCDPDLVTCNIFLTALKE 591 (664)
Q Consensus 535 ~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~~~~~ 591 (664)
...+ ....|-.+...-. +.+ +...|..+|+++... ...| ...-..++.++.+
T Consensus 535 ~rt~----h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~-KeeR~~LLEaw~~ 604 (677)
T KOG1915|consen 535 DRTQ----HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTP-KEERLMLLEAWKN 604 (677)
T ss_pred Hhcc----cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHH
Confidence 4333 2335555443322 233 456677888777642 1222 3334455555543
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=5.8e-14 Score=130.23 Aligned_cols=449 Identities=11% Similarity=0.110 Sum_probs=341.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCH-HHH
Q 006010 117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNT-LTF 195 (664)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~ 195 (664)
+...|...+.--..++++..|..+|+..+.. ...+...|...+.+-.++.....|..+++.++. +-|.+ ..|
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt-----~lPRVdqlW 144 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT-----ILPRVDQLW 144 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH-----hcchHHHHH
Confidence 4557777777778899999999999999764 567788999999999999999999999999987 33443 355
Q ss_pred HHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006010 196 NLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKN 275 (664)
Q Consensus 196 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 275 (664)
-..+.+--..|++..|.++|+.-.+. .|+..+|++.++.=.+-+..+.|..+++...- +.|++.+|-.....-.++
T Consensus 145 yKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 145 YKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKH 220 (677)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhc
Confidence 55666666789999999999998876 89999999999999999999999999999886 469999999999999999
Q ss_pred CChhHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCChhHH
Q 006010 276 GELGRAAKLVDNMFLK-GC-LPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPN--EVTYGTIINGLVKLGRAVDG 351 (664)
Q Consensus 276 g~~~~a~~~~~~~~~~-g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a 351 (664)
|....|..+|+...+. |- ..+...+.+....-..+..++.|.-+|+-.+++ ++.+ ...|..+...=-+.|+....
T Consensus 221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gI 299 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGI 299 (677)
T ss_pred CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhh
Confidence 9999999999998765 21 112233444444445678899999999998876 2323 33444444433344554333
Q ss_pred HHH--------HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHH----H-H---HH
Q 006010 352 ARV--------LMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNT--VVYSALI----D-G---LC 413 (664)
Q Consensus 352 ~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li----~-~---~~ 413 (664)
... ++.+...++ -|-.+|-..+..--..|+.+...++|++.... ++|-. ..|...| + + -.
T Consensus 300 Ed~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEl 377 (677)
T KOG1915|consen 300 EDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEEL 377 (677)
T ss_pred HHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 322 334444433 37778888888888889999999999999875 34421 1222221 1 1 13
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChH
Q 006010 414 RVGKPDEAEEILFEMINNGCAANAFTYSSLMKG----FFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLR 489 (664)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 489 (664)
...+.+.+.+++...++. +|...++|.-+--. -.++.+...|.+++...+-. .|-..+|...|..-.+.++++
T Consensus 378 e~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred HhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHH
Confidence 568999999999999985 56666666655444 45778999999999887754 488889999999999999999
Q ss_pred HHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 006010 490 EARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNS 569 (664)
Q Consensus 490 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 569 (664)
....++++.++.+ +-+..+|......-...|+.+.|..+|+-++ ..|........|.+.|+.-...|.++.|..++++
T Consensus 455 RcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi-~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYer 532 (677)
T KOG1915|consen 455 RCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAI-SQPALDMPELLWKAYIDFEIEEGEFEKARALYER 532 (677)
T ss_pred HHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHh-cCcccccHHHHHHHhhhhhhhcchHHHHHHHHHH
Confidence 9999999999874 3456889888888889999999999999996 3444444566788888888899999999999999
Q ss_pred HHHCCCCCCHHHHHHHH
Q 006010 570 MMDRGCDPDLVTCNIFL 586 (664)
Q Consensus 570 ~~~~~~~p~~~~~~~ll 586 (664)
+++. .+....|..+.
T Consensus 533 lL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 533 LLDR--TQHVKVWISFA 547 (677)
T ss_pred HHHh--cccchHHHhHH
Confidence 9974 33333444443
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=3.5e-14 Score=130.01 Aligned_cols=464 Identities=14% Similarity=0.162 Sum_probs=312.8
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHH--hcCChh-HHHHHHhhcccCCCCCCHHH
Q 006010 153 TVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVC--RLGLVD-NAIQLFREMPVRNCEPDIYT 229 (664)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~g~~~-~A~~~~~~~~~~~~~~~~~~ 229 (664)
.+.+-|.+++. +..|...++.-+|+.|.. .|++.+...-..+...-+ ...+.- .-++.|-.|...| ..+..+
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~---e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~s 189 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRS---ENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSS 189 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHh---cCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-cccccc
Confidence 45566777664 456888999999999988 566555555444444333 333332 2245666666665 333333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010 230 YCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL 309 (664)
Q Consensus 230 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 309 (664)
| +.|+..+ -+|+.. +.+..+|..+|.++|+--..++|.+++++......+.+..+||.+|.+-.-
T Consensus 190 W--------K~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~ 254 (625)
T KOG4422|consen 190 W--------KSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY 254 (625)
T ss_pred c--------ccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh
Confidence 3 3344332 333333 347789999999999999999999999998877777788999999886553
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 006010 310 KGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDG----ARVLMSMEERKFHVNEYIYSTLISGLFKEGKAED 385 (664)
Q Consensus 310 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (664)
.. ..+++.+|....+.||..|+|+++.+..+.|+++.| .+++.+|.+.|+.|...+|..++..+++.++..+
T Consensus 255 ~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 255 SV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred hc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 32 378889999988999999999999999999987755 4677788889999999999999999988887644
Q ss_pred -HHHHHHHHHH----cCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHh
Q 006010 386 -AMKLWKQMME----KGCK----PNTVVYSALIDGLCRVGKPDEAEEILFEMINNG----CAAN---AFTYSSLMKGFFE 449 (664)
Q Consensus 386 -a~~~~~~~~~----~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~ 449 (664)
+..++.++.. +..+ .|...|...+..|.+..+.+.|..+..-+.... +.++ ..-|..+....+.
T Consensus 331 ~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq 410 (625)
T KOG4422|consen 331 VASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQ 410 (625)
T ss_pred hhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 5555555543 1122 244566777888888888888888876655421 2333 2345667777788
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcC-C---H--
Q 006010 450 SGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAG-S---V-- 523 (664)
Q Consensus 450 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~---~-- 523 (664)
....+.-...|+.|...-.-|+..+...++++....|.++-..++|.+++..|..-+......++..+++.. . .
T Consensus 411 ~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r 490 (625)
T KOG4422|consen 411 MESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPER 490 (625)
T ss_pred HHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHH
Confidence 888888899999998877778888888889998899999999999999888775544444444444444433 1 1
Q ss_pred ---H-----HHHHHHHHh---hhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHhhhh
Q 006010 524 ---E-----EALKLFNEM---LCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRG-CDPDLVTCNIFLTALKE 591 (664)
Q Consensus 524 ---~-----~A~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~ll~~~~~ 591 (664)
. -|..+++.. ........-.....+...-.+.+.|+.++|.+++.-+.+.+ --|-....+.++.
T Consensus 491 ~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E---- 566 (625)
T KOG4422|consen 491 EQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE---- 566 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH----
Confidence 0 111122111 00011223344566777777889999999999999886543 2233333333222
Q ss_pred hccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHH
Q 006010 592 KLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKC 658 (664)
Q Consensus 592 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 658 (664)
+.+.-........|...++-|...+.+.-...-..+.+.+.-+..-.+|++-+
T Consensus 567 --------------l~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls~l 619 (625)
T KOG4422|consen 567 --------------LMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALSNL 619 (625)
T ss_pred --------------HHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHhhh
Confidence 22226677788889999999877654444446666777777777777777654
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=2.9e-14 Score=130.49 Aligned_cols=445 Identities=17% Similarity=0.193 Sum_probs=294.8
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHH--HHhcCCHHHH-HHHHHHhhhcCCCCCCHHHHHHH
Q 006010 84 STFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKA--YGKAHLVEEA-IRLFHTMVDEFHCKRTVKSFNSV 160 (664)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~~l 160 (664)
++=+++++ ....|....+--+|++|.+.|.+.++.....+++. |....++--| .+.|-.|. .++ ..+..+|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~-~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMR-NFG-EDSTSSW--- 190 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcc-ccc-ccccccc---
Confidence 34445554 45678899999999999999998888776655433 3333332222 23444442 222 3344455
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhc
Q 006010 161 LNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKE 240 (664)
Q Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (664)
+.|...+ -+|+...+ +..++..+|.++|+--..++|.+++++......+.+..+||.+|.+-.-.
T Consensus 191 -----K~G~vAd--L~~E~~PK--------T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~ 255 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLPK--------TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS 255 (625)
T ss_pred -----ccccHHH--HHHhhcCC--------CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh
Confidence 3454433 33443332 66789999999999999999999999998877788999999998765433
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-
Q 006010 241 NRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGR----AAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDK- 315 (664)
Q Consensus 241 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~- 315 (664)
. ..+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+
T Consensus 256 ~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 256 V----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred c----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 2 27788999999999999999999999999998765 56778889999999999999999999998887644
Q ss_pred HHHHHHHHHHC----CCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhc
Q 006010 316 AVSLLDRMVAS----KCMP----NEVTYGTIINGLVKLGRAVDGARVLMSMEERK----FHVN---EYIYSTLISGLFKE 380 (664)
Q Consensus 316 a~~~~~~~~~~----~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~ 380 (664)
+..++.++... .++| |...|...+..|....+.+-|.++..-+.... +.++ ..-|..+....|+.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 45555555432 2222 44556677777888888888887766554321 1121 23455667777888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 006010 381 GKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIW 460 (664)
Q Consensus 381 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 460 (664)
...+.....|+.|.-.-.-|+..+...++++..-.+.++-..+++.+++..|...+... -++++
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil 475 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEIL 475 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHH
Confidence 88888888888888776778888888888888888888888888888776652221111 12333
Q ss_pred HHHHHCCCCCCHH---HHHHHHHHHHcCCChHHHHH-HHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhc
Q 006010 461 KDMAKNNCVYNEV---CYSVLIHGLCEDGKLREARM-VWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCL 536 (664)
Q Consensus 461 ~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 536 (664)
..+......|+.. -+.....-++. ++.++.+ .-.++.+... .....+..+-.+.+.|+.++|.+++.-+++.
T Consensus 476 ~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 476 MLLARDKLHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred HHHhcCCCCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 3333333223222 22222221111 2222222 2223443333 3446777777889999999999999988532
Q ss_pred CCCCCCCHhHHH---HHHHHHHHcCChhHHHHHHHHHHHCC
Q 006010 537 EPKSQPDVFTYN---ILLNALCKQSNISHSIDLLNSMMDRG 574 (664)
Q Consensus 537 ~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~ 574 (664)
. +..|-....| -+++.-.+.++..+|..+++-|...+
T Consensus 552 ~-~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 552 H-NKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred C-CcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 2 2223333344 55666678889999999999997653
No 37
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=4.8e-13 Score=127.35 Aligned_cols=490 Identities=12% Similarity=0.043 Sum_probs=325.0
Q ss_pred ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 006010 82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVL 161 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 161 (664)
+.+-+..+++-+..+.++..|.-+-+.....+ .++.-...+++++.-.|.++.|..+...-.- ...+........
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l---e~~d~~cryL~~ 89 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKL---EKRDIACRYLAA 89 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhh---hhhhHHHHHHHH
Confidence 44556666666777777888887777777655 3445566778888888888888877765421 356777777778
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcc----------cCCCCcCHH-----------HHHHHHHHHHhcCChhHHHHHHhhccc
Q 006010 162 NVIIQEGLYHRALEFYNHIVNAK----------HMNILPNTL-----------TFNLVIKTVCRLGLVDNAIQLFREMPV 220 (664)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~----------~~~~~~~~~-----------~~~~ll~~~~~~g~~~~A~~~~~~~~~ 220 (664)
.++.+..++++|..++....... ..-+.+|.. .+-.-...|....+.++|...|.+...
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~ 169 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL 169 (611)
T ss_pred HHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence 88888888888888877221000 000111110 111112234445566677777766654
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 006010 221 RNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGC----FPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPN 296 (664)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~ 296 (664)
. |...|..+...-.. ..-.+.+.|+.+..... .-+......+.....-...-+.....-++..-.+..-+
T Consensus 170 ~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~ 243 (611)
T KOG1173|consen 170 A----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAEN 243 (611)
T ss_pred c----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhc
Confidence 3 44444333222111 01112122222221100 01222222222211000000111111111111123445
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006010 297 EVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISG 376 (664)
Q Consensus 297 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (664)
......-..-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.-+. ...+|-++.--
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHH
Confidence 5566666777778899999999999998874 566667777777888899888877777777776443 77889999988
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 006010 377 LFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKA 456 (664)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 456 (664)
|.-.|+..+|.+.|.+....+.. =...|-.+...|.-.|..|+|...+..+.+.- +-....+..+.--|.+.++.+-|
T Consensus 322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence 88899999999999988765322 34578888899999999999999998887751 22333344455568888999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC--CCCc----CHHhHHHHHHHHHHcCCHHHHHHHH
Q 006010 457 VEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSR--GCKP----DVVAYSSMIHGLCNAGSVEEALKLF 530 (664)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~ 530 (664)
.+.|....... |.|+...+.+.-.....+.+.+|..+|+..+.. .+.+ -..+++.|+.+|.+.+.+++|+..+
T Consensus 400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999988765 677888888888888889999999999887732 0111 2356889999999999999999999
Q ss_pred HHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhh
Q 006010 531 NEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEK 592 (664)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 592 (664)
++++...+. +..++.++.-.|...|+++.|++.|.+.+. +.|+..+...+++.+-+.
T Consensus 479 q~aL~l~~k---~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 479 QKALLLSPK---DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHcCCC---chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHHh
Confidence 999866555 888999999999999999999999999986 899998888888775443
No 38
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.72 E-value=2e-11 Score=118.02 Aligned_cols=520 Identities=11% Similarity=0.101 Sum_probs=304.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHH
Q 006010 119 KSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLV 198 (664)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 198 (664)
..|........++|+...-...|+..+...+.......|...+...-..+-++-+..+|++.++ +.|. .-+-.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk-----~~P~--~~eey 175 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK-----VAPE--AREEY 175 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh-----cCHH--HHHHH
Confidence 3677777777888888888888888877655555566788888888888888888888888877 3343 35667
Q ss_pred HHHHHhcCChhHHHHHHhhcccC------CCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCH--HHHHH
Q 006010 199 IKTVCRLGLVDNAIQLFREMPVR------NCEPDIYTYCTLMDGLCKENRLD---EAVLLLDEMQVDGCFPTP--VTFNV 267 (664)
Q Consensus 199 l~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~--~~~~~ 267 (664)
+..+++.+++++|.+.+...+.. ..+.+...|..+.+...++-+.- ....++..+... -+|. ..|..
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S 253 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCS 253 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence 77888888888888888776532 11344555666666665543332 233334443332 2333 46778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------------cC------ChHHHHHHHHHHHH
Q 006010 268 LINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL----------------KG------NLDKAVSLLDRMVA 325 (664)
Q Consensus 268 li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----------------~g------~~~~a~~~~~~~~~ 325 (664)
|.+.|.+.|.+++|.++|++.... ...+.-|+.+.++|+. .| +++-.+.-|+.+.+
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 888888888888888888876654 1223333333333321 11 12223333444433
Q ss_pred CCC-----------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CC----CCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010 326 SKC-----------MPNEVTYGTIINGLVKLGRAVDGARVLMSMEER-KF----HVNEYIYSTLISGLFKEGKAEDAMKL 389 (664)
Q Consensus 326 ~~~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~a~~~ 389 (664)
.+. +.++..|..-.. +..|+..+-...+.+.... ++ -.-...|..+...|-..|+.+.|..+
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 210 112222222222 1234555556666665543 11 11234566777777777888888888
Q ss_pred HHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----------------CCHHHHHHHHHHHHh
Q 006010 390 WKQMMEKGCKPN---TVVYSALIDGLCRVGKPDEAEEILFEMINNGCA-----------------ANAFTYSSLMKGFFE 449 (664)
Q Consensus 390 ~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~ 449 (664)
|++..+-..+-- ..+|......-.+..+++.|.++.+.+....-. .+...|+..++.-..
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 877766433211 345666666666777777777777766532111 123455666666666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCH-HhHHHHHHHHHH---cCCHHH
Q 006010 450 SGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDV-VAYSSMIHGLCN---AGSVEE 525 (664)
Q Consensus 450 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~ 525 (664)
.|-++....+++++.+..+. ++.........+-.+.-++++.+++++-+..-..|+. ..|+..+.-+.+ ....+.
T Consensus 490 ~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 77777777778777776532 2222222223344555677777777766655334443 456555544432 234777
Q ss_pred HHHHHHHhhhcCCCCCCCHh--HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHhhhhhcc-------
Q 006010 526 ALKLFNEMLCLEPKSQPDVF--TYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL--VTCNIFLTALKEKLE------- 594 (664)
Q Consensus 526 A~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~------- 594 (664)
|..+|++++. +-+|... .|-.....--+.|-...|+.+++++... +.+.. ..|+..+....+.-.
T Consensus 569 aRdLFEqaL~---~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~i 644 (835)
T KOG2047|consen 569 ARDLFEQALD---GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREI 644 (835)
T ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHH
Confidence 7777777743 2223322 2222222223456677777777776542 33332 345555544333211
Q ss_pred --------CCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc-CCCCChHHHHHHHHHhcccchHHHHHH
Q 006010 595 --------APQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK-FLSPQTSTWERVVQELCRPKRIQAAIN 656 (664)
Q Consensus 595 --------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 656 (664)
+.++++++.-..+..-++.|..+.|..++.-..+. ..+.+...|..--.--.++|+-+--.+
T Consensus 645 YekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 645 YEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 13344566666777788999999999999988775 333467889988888889998444433
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.8e-12 Score=119.14 Aligned_cols=257 Identities=10% Similarity=0.031 Sum_probs=135.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCh
Q 006010 306 GLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFH--VNEYIYSTLISGLFKEGKA 383 (664)
Q Consensus 306 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 383 (664)
++....+.+++.+-.+.....|++-+...-+....+.-...++++|+.+|+++.+..+- .|..+|+.++-. ++.+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH
Confidence 44444455555555555555555544444444444455556666666666666655321 134444444322 22111
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006010 384 EDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDM 463 (664)
Q Consensus 384 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 463 (664)
. +..+-+-.-.--+-.+.|...+.+.|.-.++.++|..+|+.+++.+ +.....|+.+.+-|....+...|++.++.+
T Consensus 314 k--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 K--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred H--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1 1111111100001233455555555666666666666666666654 334455566666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCC
Q 006010 464 AKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPD 543 (664)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 543 (664)
.+.+ |.|...|-.+.++|.-.+.+.-|+-.|++..... +-|...|.+|+.+|.+.++.++|++.|.+++ ..+ ..+
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai--~~~-dte 465 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAI--LLG-DTE 465 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHH--hcc-ccc
Confidence 6554 4555566666666666666666666666665542 2245566666666666666666666666653 221 113
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 544 VFTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 544 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
...+..+...|-+.++.++|...|++-++
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555666666666666666666655553
No 40
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=3.7e-12 Score=114.08 Aligned_cols=459 Identities=13% Similarity=0.118 Sum_probs=294.7
Q ss_pred HHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCC
Q 006010 90 IQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGL 169 (664)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (664)
+.-+...+++.-|+.+++.....+.+....+-.+++.++...|++++|+..|..+... ..++...+-.+.-++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHH
Confidence 4455667889999999888876665544566778889999999999999999988654 55667777777777778899
Q ss_pred HhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006010 170 YHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLL 249 (664)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 249 (664)
+.+|..+-++..+ +...-..++....+.|+-++-..+.+.+... .+.-.+|.......-.+.+|+++
T Consensus 107 Y~eA~~~~~ka~k--------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK--------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred HHHHHHHHhhCCC--------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999998877644 4445556666677788877777776665432 23344555555555678999999
Q ss_pred HHHHHhCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 006010 250 LDEMQVDGCFPTPVTFNVL-INGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKC 328 (664)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 328 (664)
+..+...+ |.-...|.- .-+|.+..-++-+.++++-.... .+.+....|.......+.-+-..|.+-.+.+.+.+-
T Consensus 174 YkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~ 250 (557)
T KOG3785|consen 174 YKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID 250 (557)
T ss_pred HHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc
Confidence 99998763 454455543 34567788888888888887665 333445556555554443333344444555554431
Q ss_pred CCChhhHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 006010 329 MPNEVTYGTIINGLVK-----LGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTV 403 (664)
Q Consensus 329 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 403 (664)
.. | -.+.-.++ ...-+.|++++-.+.+.- ...-..++-.|.+++++++|..+.+++.- ..|-..
T Consensus 251 ~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~Ey 319 (557)
T KOG3785|consen 251 QE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKHI----PEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEY 319 (557)
T ss_pred cc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhhC----hHhhhhheeeecccccHHHHHHHHhhcCC--CChHHH
Confidence 11 1 12222333 245677888877766541 22334466678899999999998877642 122222
Q ss_pred HHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 006010 404 VYSALIDGLCRVG-------KPDEAEEILFEMINNGCAANA-FTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCY 475 (664)
Q Consensus 404 ~~~~li~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 475 (664)
....+. +...| ...-|...|.-.-..+..-|. .--..+...+.-..++++++..+..+..--...|...+
T Consensus 320 ilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~ 397 (557)
T KOG3785|consen 320 ILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL 397 (557)
T ss_pred HHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 222222 22333 344455555444333322222 22234555566667888888888887765544455555
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhH-HHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHH-HHHHHH
Q 006010 476 SVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAY-SSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTY-NILLNA 553 (664)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 553 (664)
| +..+++..|++.+|.++|-.+....++ |..+| ..+..+|.+++.++-|..++-++ ..++ +..+. ..+..-
T Consensus 398 N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~---e~fsLLqlIAn~ 470 (557)
T KOG3785|consen 398 N-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPS---ERFSLLQLIAND 470 (557)
T ss_pred H-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCch---hHHHHHHHHHHH
Confidence 5 678888999999999999877654443 44455 45667888999999998888665 2222 33333 344467
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010 554 LCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA 588 (664)
Q Consensus 554 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 588 (664)
|.+.+.+--|.+.|+.+.. ..|++..|..--++
T Consensus 471 CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGA 503 (557)
T KOG3785|consen 471 CYKANEFYYAAKAFDELEI--LDPTPENWEGKRGA 503 (557)
T ss_pred HHHHHHHHHHHHhhhHHHc--cCCCccccCCccch
Confidence 8888888888888887776 56776665433333
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5.1e-12 Score=117.43 Aligned_cols=369 Identities=11% Similarity=0.057 Sum_probs=241.5
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH-
Q 006010 187 NILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTF- 265 (664)
Q Consensus 187 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~- 265 (664)
+...|...+-.....+.+.|..+.|+..|...... . +..|.+.+....-..+.+.+..+ .. |.+.+....
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~--P~~W~AWleL~~lit~~e~~~~l----~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--Y--PWFWSAWLELSELITDIEILSIL----VV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--C--CcchHHHHHHHHhhchHHHHHHH----Hh-cCcccchHHH
Confidence 34446555555566677788888888888877654 2 23333333332222232322222 11 111121111
Q ss_pred -HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCChhhHHHHHHHH
Q 006010 266 -NVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKC--MPNEVTYGTIINGL 342 (664)
Q Consensus 266 -~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~ 342 (664)
-.+..++....+.+++.+-.+.....|..-+...-+....+.....++++|+.+|+++.+... .-|..+|..++ |
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Y 307 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--Y 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--H
Confidence 123345556667778888777777777765655555555666678888899999988887631 11455666555 3
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006010 343 VKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAE 422 (664)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 422 (664)
++..+-. +..+.+-.-.--+-...|...+.+-|.-.++.++|...|++..+.+.. ....|+.+..-|....+...|.
T Consensus 308 v~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 308 VKNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred HHhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 3332211 112222111111113346667777788888889999999988887543 5667888888888888999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 006010 423 EILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG 502 (664)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (664)
+-++.+++.+ |.|-..|-.|.++|.-.+...=|+-.|++..... |.|...|.+|..+|.+.++.++|++.|......|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9999988875 6788888889999988888888888888888765 6778889999999999999999999999888765
Q ss_pred CCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcC--CCCCCCHh--HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 503 CKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLE--PKSQPDVF--TYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 503 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
..+...+..++..|-+.++.++|...|++.+... .|...+.. .---|..-+.+.+++++|.........
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 3456788889999999999999998888875421 22222211 111233456677888888776666554
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.6e-13 Score=125.73 Aligned_cols=419 Identities=12% Similarity=0.076 Sum_probs=255.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCH-HHHHHHHH
Q 006010 123 FIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT-VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNT-LTFNLVIK 200 (664)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~ll~ 200 (664)
....-+.++|.+++|++.|.+.++ +.|+ +..|.....+|...|+++++.+.-.+.++ +.|+- ..+..-..
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE-----l~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE-----LNPDYVKALLRRAS 191 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh-----cCcHHHHHHHHHHH
Confidence 445557788889999999988876 3455 77888888888888999888888888876 55653 36666667
Q ss_pred HHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CC--CCCCHHHHHHHHHHHHhcCC
Q 006010 201 TVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQV-DG--CFPTPVTFNVLINGLCKNGE 277 (664)
Q Consensus 201 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~--~~~~~~~~~~li~~~~~~g~ 277 (664)
++-..|++++|+.-..-.--.+--.+..+--.+=+.+-+ .|....++-.+ .+ +-|+.....+....+...-.
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 777778887775433222111101111111111111111 12222222222 22 23444433333332211000
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCC---CC---CC------hhhHHHHHHHHHh
Q 006010 278 LGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL-KGNLDKAVSLLDRMVASK---CM---PN------EVTYGTIINGLVK 344 (664)
Q Consensus 278 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~---~~---~~------~~~~~~ll~~~~~ 344 (664)
..+...+.+.|...-..+-..+.. ...+..|.+.+.+-.... .. .| ..+.......+.-
T Consensus 267 --------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL 338 (606)
T KOG0547|consen 267 --------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFL 338 (606)
T ss_pred --------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhh
Confidence 000000000010000000000000 012223333222211100 00 01 1112222223445
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006010 345 LGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEI 424 (664)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 424 (664)
.|+.-.+..-|+........++. .|-.+...|.+..+.++....|++....+.. ++.+|..-.+...-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 68888888888888887655333 3666777888899999999999988877544 666777777777778899999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 006010 425 LFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCK 504 (664)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (664)
|++.+... +.+...|..+..+..+.+.+++++..|++.++.- |..+..|+.....+...+++++|.+.|+..++. .
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E 492 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--E 492 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--c
Confidence 99998875 5567777778778888889999999999988764 667788999999999999999999999988874 3
Q ss_pred cC-------HH--hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 505 PD-------VV--AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 505 p~-------~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
|+ .. +--.++. +.-.+++.+|+.+++++++.+|. ....|..|...-.+.|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk---ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK---CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33 11 1111221 11338899999999999765554 556788888889999999999999998774
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.5e-12 Score=122.60 Aligned_cols=497 Identities=11% Similarity=0.068 Sum_probs=319.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHH
Q 006010 117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFN 196 (664)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 196 (664)
+..-+..+.+-+..+.++.-|+-+-+++.. ...++...-.+++++.-.|++++|..+...-.- ...|..+..
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~---l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l-----e~~d~~cry 86 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAG---LTNDPADIYWLAQVLYLGRQYERAAHLITTYKL-----EKRDIACRY 86 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHh---ccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhh-----hhhhHHHHH
Confidence 444566677777788889999988888744 334555556688888888999998887766533 234777888
Q ss_pred HHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006010 197 LVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNG 276 (664)
Q Consensus 197 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 276 (664)
.....+.+..++++|..++..... .-+...|-.--. ...-..+.+. ++.. +......+-.-...|....
T Consensus 87 L~~~~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~ 155 (611)
T KOG1173|consen 87 LAAKCLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALD 155 (611)
T ss_pred HHHHHHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhc
Confidence 888899999999999999874411 111111110000 0000111111 1100 0111111111223455556
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCChhHHH
Q 006010 277 ELGRAAKLVDNMFLKGCLPNEVTYNTL---IHGLCLKGNLDKAVSLLDRMVAS-KCMPNEVTYGTIINGLVKLGRAVDGA 352 (664)
Q Consensus 277 ~~~~a~~~~~~~~~~g~~p~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~ 352 (664)
+.++|...|.+.... |...+..+ +.+..-. .++-..++..+.-. -...+......+.........-+...
T Consensus 156 n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt--~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~ 229 (611)
T KOG1173|consen 156 NREEARDKYKEALLA----DAKCFEAFEKLVSAHMLT--AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESL 229 (611)
T ss_pred cHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcc--hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccc
Confidence 677777777776654 44333333 2222111 11122222211000 00112222222222111011111111
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006010 353 RVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNG 432 (664)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 432 (664)
..-.+..-.+..-+......-.+-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.-
T Consensus 230 ~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y 308 (611)
T KOG1173|consen 230 TRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY 308 (611)
T ss_pred ccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC
Confidence 111111111233356666677777888999999999999998874 3455566666778888999888888878888763
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHH
Q 006010 433 CAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSS 512 (664)
Q Consensus 433 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 512 (664)
|..+.+|-++...|...|+..+|.+.|.+....+ +.=...|-.....|+-.|..++|+..+..+-+. ++-...-+..
T Consensus 309 -P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LY 385 (611)
T KOG1173|consen 309 -PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLY 385 (611)
T ss_pred -CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHH
Confidence 7778899999999999999999999999987755 333457899999999999999999999877654 1222223344
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHhhh
Q 006010 513 MIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDR--GCDPDLVTCNIFLTALK 590 (664)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~~~~ 590 (664)
+.--|.+.++.+-|.++|.+++.+.|. |+..++-+.-.....+.+.+|..+|+..+.. .+.+...+|..++
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~---Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~---- 458 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPS---DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTL---- 458 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCC---cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHH----
Confidence 555678899999999999999765554 6777888887778889999999999998832 1122222333333
Q ss_pred hhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhhc
Q 006010 591 EKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNLY 663 (664)
Q Consensus 591 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 663 (664)
..||.++.+.+++++|+..+++.+.. .+.+..++..++-.+...|+++.|++.|.++|.
T Consensus 459 -------------~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 459 -------------NNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred -------------HhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 34677799999999999999999986 466889999999999999999999999998873
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.1e-12 Score=122.51 Aligned_cols=420 Identities=13% Similarity=0.120 Sum_probs=265.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCC-HHHHHHH
Q 006010 156 SFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN-TLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPD-IYTYCTL 233 (664)
Q Consensus 156 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l 233 (664)
.+-..++-+.++|++++|+++|.+.++ ..|+ ...|.....+|...|+++++.+.-...++.+ |+ +..+..-
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~-----l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RR 189 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIE-----LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRR 189 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHh-----cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHH
Confidence 345566778889999999999999987 5577 6788888999999999999999888888763 44 4466667
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-c--CCCCCHHHHHHHHHHHHhc
Q 006010 234 MDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFL-K--GCLPNEVTYNTLIHGLCLK 310 (664)
Q Consensus 234 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~--g~~p~~~~~~~l~~~~~~~ 310 (664)
..++-..|++++|+.-..-..-.+.-.+..+--.+=+.+- ..|....++-.. . .+.|+.....+....+...
T Consensus 190 A~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 190 ASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 7777888888887653332221111111111111111111 111222222112 1 1234444333333332210
Q ss_pred ------CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHH---cCCC---CC------HHHHH
Q 006010 311 ------GNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVK-LGRAVDGARVLMSMEE---RKFH---VN------EYIYS 371 (664)
Q Consensus 311 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~---~~~~---~~------~~~~~ 371 (664)
...+++-..+....+ ..+.. ...+..+...+.+-.. .... .| ..+..
T Consensus 265 ~~~~~~~~~~ksDa~l~~~l~--------------~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~ 330 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEALE--------------ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL 330 (606)
T ss_pred ccccccCCCccchhhHHHHHH--------------HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence 000111111111100 00000 0012222222211110 0000 01 11222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006010 372 TLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESG 451 (664)
Q Consensus 372 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 451 (664)
.-...+.-.|+.-.|..-|+..+.....++. .|-.+...|....+.++....|.++.+.+ +.++.+|..-...+.-.+
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHH
Confidence 2222344578889999999999887554333 26667778999999999999999999886 667888888888888899
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHH
Q 006010 452 KGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFN 531 (664)
Q Consensus 452 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 531 (664)
++++|..=|++.+... |.+...|..+..+..+.++++++...|++.+.. ++-.+..|+.....+...++++.|.+.|+
T Consensus 409 q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 9999999999999876 566778888888888999999999999999986 44457899999999999999999999999
Q ss_pred HhhhcCCCCC---CCHh--HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHhhhhhccCCCCchhhhHH
Q 006010 532 EMLCLEPKSQ---PDVF--TYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT-CNIFLTALKEKLEAPQDGTDFLNE 605 (664)
Q Consensus 532 ~~~~~~~~~~---~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~ 605 (664)
.++.+++... .+.. ....++-.- -.+++.+|..++.++.+ +.|.... +..+..
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq------------------ 545 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQ------------------ 545 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHH------------------
Confidence 9977665411 1111 122222221 24899999999999997 6665443 333333
Q ss_pred HHHHhhhcCCcchHHHHHHHHHHc
Q 006010 606 LAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
+..++|+.++|+++|++....
T Consensus 546 ---~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 546 ---FELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ---HHHHHhhHHHHHHHHHHHHHH
Confidence 388999999999999998753
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=4.3e-13 Score=134.26 Aligned_cols=298 Identities=11% Similarity=0.029 Sum_probs=147.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006010 309 LKGNLDKAVSLLDRMVASKCMPNEV-TYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAM 387 (664)
Q Consensus 309 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 387 (664)
..|+++.|.+.+.+..+. .|++. .+..........|+.+.|.+.+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 355666666665555443 22222 222233444455555555555555544322211122222344444555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006010 388 KLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNN 467 (664)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 467 (664)
..++.+.+..+. +...+..+...+...|++++|.+.+..+.+.+.. +...+..+-.
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~---------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH----------------------
Confidence 555555544322 3344444555555555555555555555544311 1111110000
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC---CCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCH
Q 006010 468 CVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG---CKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDV 544 (664)
Q Consensus 468 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 544 (664)
.........+..+++.+.+..+.+.. .+.+...+..++..+...|+.++|.+++++.++..++.. +.
T Consensus 230 ---------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~-~~ 299 (409)
T TIGR00540 230 ---------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR-AI 299 (409)
T ss_pred ---------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc-cc
Confidence 00011111122222222333333221 112566677777777788888888888887754333211 00
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHH
Q 006010 545 FTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVE 624 (664)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 624 (664)
.............++.+.+.+.+++..+ ..|+... . .++++++|++.+.|+|++|.++|+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~-~-----------------~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPK-C-----------------CINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChh-H-----------------HHHHHHHHHHHHcccHHHHHHHHH
Confidence 0011111222334666777777777665 4555542 1 112234556888888888888888
Q ss_pred HHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 625 VMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 625 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
+.......|++..+.+++..+.+.|+.++|.+++++.|
T Consensus 360 ~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 360 NVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43332247788777888888888888888888777654
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=1.1e-12 Score=130.45 Aligned_cols=283 Identities=14% Similarity=0.119 Sum_probs=131.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH--HHHHHHHhcCChhHHH
Q 006010 275 NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYG--TIINGLVKLGRAVDGA 352 (664)
Q Consensus 275 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~ 352 (664)
.|+++.|++.+.........| ...|.....+....|+++.|.+.+.++.+. .|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 467777776666544432111 222323333445667777777777666654 33332222 2244556666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCChhHHHHHH
Q 006010 353 RVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTV-------VYSALIDGLCRVGKPDEAEEIL 425 (664)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~a~~~~ 425 (664)
..++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 666666665433 45556666666666666666666666666554332111 1111122122222223333333
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCc
Q 006010 426 FEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKP 505 (664)
Q Consensus 426 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 505 (664)
+...+. .+.++.....+...+...|+.++|.+++++..+. +++.... ++.+....++.+++++..+...+.. +-
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 332221 1234444444555555555555555555444442 2232111 1122223344555555554444431 11
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010 506 DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMM 571 (664)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 571 (664)
|...+..+...+.+.|++++|.+.|+.+++ ..|+...+..+...+.+.|+.++|.+++++..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~----~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALK----QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 223344444555555555555555555432 23444444444445555555555555554443
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=1e-15 Score=145.44 Aligned_cols=261 Identities=16% Similarity=0.169 Sum_probs=95.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006010 372 TLISGLFKEGKAEDAMKLWKQMMEKG-CKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFES 450 (664)
Q Consensus 372 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 450 (664)
.+...+.+.|++++|++++++..... ...+...|..+.......++.+.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44566667777777777775544332 22344445555555666777888888888877664 3345556666665 577
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCcCHHhHHHHHHHHHHcCCHHHHHHH
Q 006010 451 GKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG-CKPDVVAYSSMIHGLCNAGSVEEALKL 529 (664)
Q Consensus 451 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 529 (664)
+++++|.+++....+.. ++...+..++..+...++++++..+++.+.... ..++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888887777665543 455666677777788888888888888766432 234566777778888888888888888
Q ss_pred HHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHH
Q 006010 530 FNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIR 609 (664)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~ 609 (664)
+++++...|+ |....+.++..+...|+.+++.++++...+.. ..|+..+..+..+
T Consensus 169 ~~~al~~~P~---~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~--------------------- 223 (280)
T PF13429_consen 169 YRKALELDPD---DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAA--------------------- 223 (280)
T ss_dssp HHHHHHH-TT----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHH---------------------
T ss_pred HHHHHHcCCC---CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHH---------------------
Confidence 8888765555 56677788888888888888888877777632 2223333333333
Q ss_pred hhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 610 LFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
+...|++++|..++++..+. .+.|+.....+++++...|+.++|.++.++.+
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT----------------
T ss_pred hccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 78888888888888888775 35578888888888888888888888766643
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=1e-12 Score=131.58 Aligned_cols=287 Identities=12% Similarity=0.048 Sum_probs=182.6
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCChh
Q 006010 273 CKNGELGRAAKLVDNMFLKGCLPN-EVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEV--TYGTIINGLVKLGRAV 349 (664)
Q Consensus 273 ~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~ 349 (664)
...|+++.|.+.+.+..+.. |+ ...+-....+....|+.+.|.+++.+..+. .|+.. ........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 46799999999999887663 44 344455567888899999999999998775 34443 3444578888999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HhcCChhHHHHHH
Q 006010 350 DGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYS-ALIDGL---CRVGKPDEAEEIL 425 (664)
Q Consensus 350 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~---~~~~~~~~a~~~~ 425 (664)
.|...++.+.+..+. +...+..+...+.+.|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+
T Consensus 171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999998755 6778889999999999999999999999998654 333332 122222 3333333444455
Q ss_pred HHHHHCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHcCCChHHHHHHHHHHH
Q 006010 426 FEMINNGC---AANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVC---YSVLIHGLCEDGKLREARMVWTQML 499 (664)
Q Consensus 426 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (664)
..+.+... +.+...+..+...+...|+.++|.+++++..+.. |+... ...........++.+.+.+.++...
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 55554421 1256666667777777777777777777776654 22221 0111111223455566666665555
Q ss_pred hCCCCcC-H--HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010 500 SRGCKPD-V--VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMM 571 (664)
Q Consensus 500 ~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 571 (664)
+. .|+ . ....++...+.+.|++++|.+.|+.+ ......|+...+..+...+.+.|+.++|.+++++..
T Consensus 327 k~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a--~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 327 KN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNV--AACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred Hh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh--HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 233 2 33445666666666666666666632 111234555555566666666666666666666543
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=1.8e-12 Score=128.90 Aligned_cols=252 Identities=15% Similarity=0.186 Sum_probs=163.4
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 006010 273 CKNGELGRAAKLVDNMFLKGCLPNEVTYN--TLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVD 350 (664)
Q Consensus 273 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 350 (664)
.+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.+.++++.+.. +-++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4555555555555555443 22221111 22344455555555555555555443 2344445555555555555555
Q ss_pred HHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006010 351 GARVLMSMEERKFHVNE-------YIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEE 423 (664)
Q Consensus 351 a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 423 (664)
|.+++..+.+.+..++. ..|..++.......+.+...++|+.+.+. .+.++.....+...+...|+.++|..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555554333111 12222333333344555666666665443 23467778888888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 006010 424 ILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGC 503 (664)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (664)
++++..+. +++.... ++.+....++.+++.+..+...+.. |.|...+..+...+...+++++|.+.|+.+.+.
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-- 357 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-- 357 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 99988875 4555322 2333445688999999999888776 567777888899999999999999999999884
Q ss_pred CcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 006010 504 KPDVVAYSSMIHGLCNAGSVEEALKLFNEMLC 535 (664)
Q Consensus 504 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (664)
.|+...+..+..++.+.|+.++|..++++.+.
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 68888888999999999999999999998853
No 50
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=1.9e-11 Score=109.60 Aligned_cols=453 Identities=13% Similarity=0.075 Sum_probs=286.1
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcC
Q 006010 127 AYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLG 206 (664)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 206 (664)
-+....++..|+.+++--... +......+-.-+..++...|++++|+..|..+... -.++...+..+..++.-.|
T Consensus 31 dfls~rDytGAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~----~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK----DDAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHhcccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc----CCCCcccchhHHHHHHHHH
Confidence 345667888888887765322 11111223334667888999999999999998762 3356666667777777889
Q ss_pred ChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006010 207 LVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVD 286 (664)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 286 (664)
.+.+|..+-....+ ++-.-..|++...+.++-++...+.+.+... ..---+|.......-.+.+|++++.
T Consensus 106 ~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999998876643 3445566777778888888877777666542 2333345555555567899999999
Q ss_pred HHHHcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 006010 287 NMFLKGCLPNEVTYNTLIH-GLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHV 365 (664)
Q Consensus 287 ~~~~~g~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 365 (664)
+.... .|+....|..+. +|.+..-++-+.++++-.++. ++.++...+..+....+.-.-..|..-..++.+.+-..
T Consensus 176 rvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 176 RVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred HHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 98876 455556665444 567777788888988888775 23334444444444444333333444444444332110
Q ss_pred CHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010 366 NEYIYSTLISGLFKE-----GKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTY 440 (664)
Q Consensus 366 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 440 (664)
...+.-.++. .+-+.|++++-.+.+. -| ..--.++-.|.+.+++.+|..+.+++. |.++.-|
T Consensus 253 -----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~Ey 319 (557)
T KOG3785|consen 253 -----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEY 319 (557)
T ss_pred -----chhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHH
Confidence 1223333333 2457788888776654 22 233345667889999999998887764 2333333
Q ss_pred HHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHH
Q 006010 441 SSLMKGFFESG-------KGHKAVEIWKDMAKNNCVYNEV-CYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSS 512 (664)
Q Consensus 441 ~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 512 (664)
..-.-.+...| ...-|.+.|+..-..+...|.. --.++..++.-..++++.+..+..+...-...|... ..
T Consensus 320 ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N 398 (557)
T KOG3785|consen 320 ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LN 398 (557)
T ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hH
Confidence 22222223333 3455666676665554433332 234556666667788999988888877644434333 35
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHH-HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhh
Q 006010 513 MIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYN-ILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKE 591 (664)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 591 (664)
+.++++..|++.+|+++|-++ ..+.++ |..+|. .+.++|.+.|+++-|++++-++- ...+..+...+
T Consensus 399 ~AQAk~atgny~eaEelf~~i--s~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLql------ 466 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRI--SGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQL------ 466 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhh--cChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHH------
Confidence 788999999999999999887 555544 444554 55688899999999998877664 22233332222
Q ss_pred hccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHH
Q 006010 592 KLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWE 639 (664)
Q Consensus 592 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 639 (664)
++..|.+.+.+=-|.+.|+.+.. ..|+++.|.
T Consensus 467 --------------IAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 467 --------------IANDCYKANEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred --------------HHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence 23337888888778888887765 577777774
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=5e-15 Score=140.81 Aligned_cols=261 Identities=15% Similarity=0.158 Sum_probs=68.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH
Q 006010 123 FIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTV 202 (664)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 202 (664)
.++..+.+.|++++|++++.........+.++..|..+.......++++.|...|+++...++. +...+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~----~~~~~~~l~~l- 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA----NPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccc-
Confidence 3455555556666666655433222111233444444455555555566666666655542111 22234444444
Q ss_pred HhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHH
Q 006010 203 CRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDG-CFPTPVTFNVLINGLCKNGELGRA 281 (664)
Q Consensus 203 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a 281 (664)
...+++++|.+++...-+. .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4555555555555544333 2344444555555555566666555555544321 223445555555555555666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010 282 AKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEER 361 (664)
Q Consensus 282 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 361 (664)
++.+++..+..+. |......++..+...|+.+++.++++...+.. +.|+..+..+..+|...|+.++|..++++....
T Consensus 166 ~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 166 LRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 6666555554211 34445555555555555555555555554432 334444555555555555555555555555544
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006010 362 KFHVNEYIYSTLISGLFKEGKAEDAMKLWKQM 393 (664)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 393 (664)
.+. |......+..++...|+.++|..+.+++
T Consensus 244 ~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 244 NPD-DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp STT--HHHHHHHHHHHT---------------
T ss_pred ccc-cccccccccccccccccccccccccccc
Confidence 322 4444555555555555555555555443
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.60 E-value=3.9e-09 Score=102.62 Aligned_cols=484 Identities=15% Similarity=0.174 Sum_probs=313.4
Q ss_pred ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHh--------cCCHHHHHHHHHHhhhcCCCCCC
Q 006010 82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGK--------AHLVEEAIRLFHTMVDEFHCKRT 153 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~ 153 (664)
+...|...+..-.. .-......+|+++.+.- +.+-..|...++.-.. ...++..-..|+..+-. ...=
T Consensus 26 svk~W~RYIe~k~~-sp~k~~~~lYERal~~l-p~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~--mHkm 101 (835)
T KOG2047|consen 26 SVKCWLRYIEHKAG-SPDKQRNLLYERALKEL-PGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVF--MHKM 101 (835)
T ss_pred hHHHHHHHHHHHcc-CChHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHH--HhcC
Confidence 55566666554443 22344556677777643 3344555554422111 11122222222222110 0122
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHH
Q 006010 154 VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTL 233 (664)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 233 (664)
+..|...++.+.++|+.......|+..+..- .+......|...+......|-++.+..+++..++. ++..-+..
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraL--pvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eey 175 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRAL--PVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEY 175 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--chHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHH
Confidence 4588999999999999999999999998742 24445568889999999999999999999999865 45557888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCH--HHHHH
Q 006010 234 MDGLCKENRLDEAVLLLDEMQVDG------CFPTPVTFNVLINGLCKNGELG---RAAKLVDNMFLKGCLPNE--VTYNT 302 (664)
Q Consensus 234 ~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~g~~p~~--~~~~~ 302 (664)
+..+++.+++++|-+.+....... .+.+-..|..+.+...++-+.- ....+++.+..+ -+|. ..|.+
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S 253 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCS 253 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence 899999999999999998876532 2445667777777776654432 334455555443 3343 47899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC----------------------hhHHHHHHHHHHH
Q 006010 303 LIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGR----------------------AVDGARVLMSMEE 360 (664)
Q Consensus 303 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------------------~~~a~~~~~~~~~ 360 (664)
|...|.+.|.+++|.++|++.... .....-|..+.+.|+.... ++-....|+.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 999999999999999999999875 3344445555555543211 1222223333332
Q ss_pred cCC-----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCChhHHHH
Q 006010 361 RKF-----------HVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPN------TVVYSALIDGLCRVGKPDEAEE 423 (664)
Q Consensus 361 ~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~ 423 (664)
..+ +-+...|..-+. +..|+..+....|.+..+. +.|. ...|..+...|-..|+.+.|..
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 211 012222222222 2356677777788777654 2222 3467788889999999999999
Q ss_pred HHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----------------CCHHHHHHHHHHHH
Q 006010 424 ILFEMINNGCAAN---AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCV-----------------YNEVCYSVLIHGLC 483 (664)
Q Consensus 424 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~ 483 (664)
+|++..+...+.- ..+|..-...-.+..+++.|++++++....--. .+...|...++..-
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 9999988754322 356666667777888999999998876542111 12234566666667
Q ss_pred cCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCH-hHHHHHHHHHHH-c--CC
Q 006010 484 EDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDV-FTYNILLNALCK-Q--SN 559 (664)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~-~--g~ 559 (664)
..|-++....+++++++..+. ++......+..+..+.-++++.++|++-+.+ -.-|+. .+|+..+.-+.+ - ..
T Consensus 489 s~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~L--Fk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISL--FKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc--CCCccHHHHHHHHHHHHHHHhcCCC
Confidence 788999999999999987654 3334444444555667799999999998533 223443 478887766543 2 37
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010 560 ISHSIDLLNSMMDRGCDPDLVTCNIFL 586 (664)
Q Consensus 560 ~~~A~~~~~~~~~~~~~p~~~~~~~ll 586 (664)
.+.|.++|+++++ |++|...-+..++
T Consensus 566 lEraRdLFEqaL~-~Cpp~~aKtiyLl 591 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPEHAKTIYLL 591 (835)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHH
Confidence 8999999999999 6777655444443
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=1.2e-11 Score=109.64 Aligned_cols=225 Identities=14% Similarity=0.107 Sum_probs=99.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhc
Q 006010 270 NGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNE----VTYGTIINGLVKL 345 (664)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~ 345 (664)
.-|...|-+|.|+++|..+.+.|. --......|+..|-...+|++|++.-+++.+.+-.+.. ..|.-+...+...
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 334444444444444444433221 12223344444444444444444444444443211111 1112222222233
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006010 346 GRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEIL 425 (664)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 425 (664)
.+.+.|..++.+..+.+.. .+..--.+.+.+...|+++.|++.|+.+.+++..--+.+...|..+|...|+.++....+
T Consensus 194 ~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 194 SDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4444445555444443322 222223344455555555555555555555543333444555555566666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---CCChHHHHHHHHHHHh
Q 006010 426 FEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCE---DGKLREARMVWTQMLS 500 (664)
Q Consensus 426 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 500 (664)
..+.+.. +.......+.+.-....-.+.|...+.+-.... |+...+..++..-.. .|...+-+.++.+|+.
T Consensus 273 ~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 273 RRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRRK--PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC--CcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 5555542 223333333333333344444444444443332 566555555554432 2334444455555543
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=4.7e-11 Score=109.51 Aligned_cols=285 Identities=16% Similarity=0.161 Sum_probs=181.2
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010 240 ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSL 319 (664)
Q Consensus 240 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 319 (664)
.|++.+|+++..+-.+.+-. ....|..-+.+.-..||.+.+-+++.+..+....++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46666666666665554422 23344444555556666666666666665543334445555555666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 006010 320 LDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNE-------YIYSTLISGLFKEGKAEDAMKLWKQ 392 (664)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 392 (664)
+.++.+.+ +.++.......++|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.-...|++
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66666554 334555666666666666666666666666666544332 2455555555555555555556666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 006010 393 MMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNE 472 (664)
Q Consensus 393 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 472 (664)
...+ .+.++..-..++.-+.+.|+.++|.++.++..+++..++ . ...-.+.+-++...-++..+.-.+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 5443 334566666777778888888888888888888765544 1 11223445566666666666655544 4555
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhh
Q 006010 473 VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEML 534 (664)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (664)
..+.+|...|.+.+.|.+|...|+..++. .|+..+|+.+..++.+.|+..+|.+.+++.+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 77777888888888888888888877764 6778888888888888888888888887774
No 55
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=1.2e-12 Score=127.40 Aligned_cols=283 Identities=14% Similarity=0.125 Sum_probs=209.6
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010 312 NLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKF--HVNEYIYSTLISGLFKEGKAEDAMKL 389 (664)
Q Consensus 312 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 389 (664)
+..+|...|..+..+ +.-...+...+..+|...+++++|.++|+.+.+..+ --+...|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 356777777774443 222334555667777777888888888877766521 1145566666554322 122222
Q ss_pred H-HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 006010 390 W-KQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNC 468 (664)
Q Consensus 390 ~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 468 (664)
+ +.+.... +..+.+|.++.++|.-.++.+.|++.|+++++.+ +-...+|+.+..-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 2333332 3367899999999999999999999999999874 4477888988888899999999999999988754
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHH
Q 006010 469 VYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTY 547 (664)
Q Consensus 469 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 547 (664)
+.+..+|-.+.-.|.+.++++.|.-.|+++++- .| +.+....++..+.+.|+.|+|+.+++++..+++. |+..-
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k---n~l~~ 560 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK---NPLCK 560 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC---CchhH
Confidence 344556777888999999999999999999885 45 4566777888899999999999999999766655 44444
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHH
Q 006010 548 NILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVML 627 (664)
Q Consensus 548 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (664)
-..+..+...+++++|+..++++.+ +.|+..+...++... |.+.|+.+.|..-|.-|.
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki--------------------~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKI--------------------YKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHH--------------------HHHHccchHHHHhhHHHh
Confidence 4556677788999999999999998 788877665555543 899999999999999988
Q ss_pred Hc
Q 006010 628 QK 629 (664)
Q Consensus 628 ~~ 629 (664)
+.
T Consensus 619 ~l 620 (638)
T KOG1126|consen 619 DL 620 (638)
T ss_pred cC
Confidence 74
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=1.3e-11 Score=109.52 Aligned_cols=288 Identities=14% Similarity=0.129 Sum_probs=160.9
Q ss_pred CCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCC---HHHHHHHHHHHHhcCChh
Q 006010 168 GLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPD---IYTYCTLMDGLCKENRLD 244 (664)
Q Consensus 168 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~ 244 (664)
++.++|.+.|-+|.+.+ +.+..+.-++.+.|.+.|..++|+.+.+.+..+.--+. ..+...|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d----~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED----PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC----chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 45566666666665521 11333455556666666666666666666554410111 123444556666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHH
Q 006010 245 EAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNE----VTYNTLIHGLCLKGNLDKAVSLL 320 (664)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~ 320 (664)
.|+.+|..+.+.+. --......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 66666666665431 23345556666666666666666666666655444332 23455555556666677777777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006010 321 DRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKP 400 (664)
Q Consensus 321 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 400 (664)
.+..+.+ +..+..--.+.+.....|+++.|.+.++.+.++++..-..+...|..+|.+.|+.++....+..+.+...
T Consensus 204 ~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~-- 280 (389)
T COG2956 204 KKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT-- 280 (389)
T ss_pred HHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 7666553 2233333445566666777777777777777665554555666666777777777777777776666432
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHH
Q 006010 401 NTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFES---GKGHKAVEIWKDMAK 465 (664)
Q Consensus 401 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 465 (664)
+...-..+........-.+.|..++.+-++. .|+...+..+++.-... |...+....++.|..
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 2333333333333344455555555555544 56777777777655433 233444445555543
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.57 E-value=2.6e-11 Score=121.52 Aligned_cols=536 Identities=16% Similarity=0.138 Sum_probs=306.0
Q ss_pred CCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHH
Q 006010 76 LGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVK 155 (664)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 155 (664)
..|..|+..+|.+++..|+..|+.+.|- +|.-|.-.+.+.....++.++......++.+.+. .|.++
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aD 84 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLAD 84 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCchh
Confidence 3467789999999999999999999998 9988888888888889999998888888766543 57888
Q ss_pred HHHHHHHHHHHcCCHhH---HHHHHHHHHhc-ccCCCC-cCHHH-------------HHHHHHHHHhcCChhHHHHHHhh
Q 006010 156 SFNSVLNVIIQEGLYHR---ALEFYNHIVNA-KHMNIL-PNTLT-------------FNLVIKTVCRLGLVDNAIQLFRE 217 (664)
Q Consensus 156 ~~~~l~~~~~~~~~~~~---A~~~~~~~~~~-~~~~~~-~~~~~-------------~~~ll~~~~~~g~~~~A~~~~~~ 217 (664)
+|..+...|...|+... ..+.++.+... .+.|+. |.... -..++....-.|-++.+++++..
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998654 33322222110 001111 00000 11223333444566666777666
Q ss_pred cccCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 006010 218 MPVRN-CEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPN 296 (664)
Q Consensus 218 ~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~ 296 (664)
+.... ..|... .++-+.... ....++.......--.|++.+|..+++.-...|+.+.|..++.+|.+.|.+.+
T Consensus 165 ~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 165 VPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred CCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 64432 111111 233333322 22333333333221258999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC----CHHHHHH
Q 006010 297 EVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHV----NEYIYST 372 (664)
Q Consensus 297 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ 372 (664)
..-|..++-+ .++...+..+++-|.+.|+.|+..|+...+..+.++|....+. .|.+. +...+..
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~sq~~hg~tAavrsa 307 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EGSQLAHGFTAAVRSA 307 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cccchhhhhhHHHHHH
Confidence 8877777765 7888889999999999999999999998887777755522221 12221 1222222
Q ss_pred HHHHHHhcCCh-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHH
Q 006010 373 LISGLFKEGKA-----EDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNG---CAANAFTYSSLM 444 (664)
Q Consensus 373 l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~ 444 (664)
+..+.....+. .-....+.+..-.|+.-....|...+. ....|.-++++.+...+..-. .+.++..+..++
T Consensus 308 a~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l 386 (1088)
T KOG4318|consen 308 ACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL 386 (1088)
T ss_pred HhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH
Confidence 22221111111 111122222222233323333333222 223555556665555554321 112333343333
Q ss_pred HHHHhcC----------------------ChHHHHHHHHHHHHC----------------CCCC-------CHHHHHHHH
Q 006010 445 KGFFESG----------------------KGHKAVEIWKDMAKN----------------NCVY-------NEVCYSVLI 479 (664)
Q Consensus 445 ~~~~~~~----------------------~~~~a~~~~~~~~~~----------------~~~~-------~~~~~~~l~ 479 (664)
.-|.+.- +..+..+......+. ...+ -...-+.++
T Consensus 387 rqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~ 466 (1088)
T KOG4318|consen 387 RQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLH 466 (1088)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHH
Confidence 3333221 111111111111000 0000 001223445
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC
Q 006010 480 HGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN 559 (664)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 559 (664)
..++..-+..+++..-+..... .-| ..|..|++-++.....+.|..+.++....+.....|...+..+.+.+.+.+.
T Consensus 467 l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~ 543 (1088)
T KOG4318|consen 467 LTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI 543 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH
Confidence 5555555555555443333322 112 4788999999999999999999999965555566677778889999999999
Q ss_pred hhHHHHHHHHHHHCC-CCCC-HHHHHHHHHhhhhhccC--CCCchhhhHHHH--------HHhhhcCCcchHHHHHHHHH
Q 006010 560 ISHSIDLLNSMMDRG-CDPD-LVTCNIFLTALKEKLEA--PQDGTDFLNELA--------IRLFKRQRTSGGFKIVEVML 627 (664)
Q Consensus 560 ~~~A~~~~~~~~~~~-~~p~-~~~~~~ll~~~~~~~~~--~~~~~~~~~~l~--------~~~~~~g~~~~A~~~~~~~~ 627 (664)
...+.++++++.+.- ..|+ ..++-.++...+..+.. ..+..+++.+++ .+..+.++...|.++.+.-.
T Consensus 544 l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~ 623 (1088)
T KOG4318|consen 544 LYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEE 623 (1088)
T ss_pred HHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHH
Confidence 999999999998631 2222 22333444443322211 111112222222 22344556666777777666
Q ss_pred HcCCCCChHHHHHHHHHhc
Q 006010 628 QKFLSPQTSTWERVVQELC 646 (664)
Q Consensus 628 ~~~~~~~~~~~~~l~~~~~ 646 (664)
++ ++|.|.....+.+...
T Consensus 624 qk-yk~~P~~~e~lcrlv~ 641 (1088)
T KOG4318|consen 624 QK-YKPYPKDLEGLCRLVY 641 (1088)
T ss_pred HH-hcCChHHHHHHHHHHH
Confidence 55 5666655555544443
No 58
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=1e-12 Score=127.88 Aligned_cols=286 Identities=14% Similarity=0.088 Sum_probs=210.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010 242 RLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGC--LPNEVTYNTLIHGLCLKGNLDKAVSL 319 (664)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~~~ 319 (664)
+..+|...|+.+... +.-+..+...+..+|...+++++|+++|+.+.+... .-+.+.|.+.+-.+-+ .-+---+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHH
Confidence 457788888885544 333446667788889999999999999998876521 2255677776654322 1111122
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006010 320 LDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCK 399 (664)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 399 (664)
-+.+.+. -+..+.+|.++.++|.-+++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+.....
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 2333333 2556788999999999999999999999998876543 6778888888888888899999999888764222
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010 400 PNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLI 479 (664)
Q Consensus 400 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 479 (664)
+-.+|..+...|.+.++++.|+-.|+.+.+.+ |.+......+...+.+.|+.++|+++++++...+ +.|+..--..+
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 33455567778889999999999999988876 6677777888888888999999999999988876 44554444456
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC
Q 006010 480 HGLCEDGKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEP 538 (664)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (664)
..+...++.++|+..++++++. .|+ ...+..++..|.+.|+.+.|+.-|.-+..++|
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 6777888899999999998874 555 46677888889999999999988888854444
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.55 E-value=1.6e-09 Score=105.45 Aligned_cols=468 Identities=14% Similarity=0.099 Sum_probs=256.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH
Q 006010 123 FIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTV 202 (664)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 202 (664)
.++.+ ...+++...++..+.+++.++ ....+....+-.+...|+-++|.......++. -..+.++|..+.-.+
T Consensus 13 ~~lk~-yE~kQYkkgLK~~~~iL~k~~--eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~----d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 13 RALKC-YETKQYKKGLKLIKQILKKFP--EHGESLAMKGLTLNCLGKKEEAYELVRLGLRN----DLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHH-HHHHHHHhHHHHHHHHHHhCC--ccchhHHhccchhhcccchHHHHHHHHHHhcc----CcccchhHHHHHHHH
Confidence 33333 356667777777777766433 33334444444555567777777777666551 122455676666666
Q ss_pred HhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006010 203 CRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAA 282 (664)
Q Consensus 203 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 282 (664)
....++++|++.|......+ +.|...+.-+.-.-.+.|+++........+.+.. +.....|..++.++.-.|+...|.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777776665 4456666666656666666666666666655542 223345666666777777777777
Q ss_pred HHHHHHHHcC-CCCCHHHHHHH------HHHHHhcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCChhHHHHH
Q 006010 283 KLVDNMFLKG-CLPNEVTYNTL------IHGLCLKGNLDKAVSLLDRMVASKCMPNEV-TYGTIINGLVKLGRAVDGARV 354 (664)
Q Consensus 283 ~~~~~~~~~g-~~p~~~~~~~l------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~ 354 (664)
.+++...+.. -.|+...+... .....+.|..+.|.+.+...... ..|.. .-.+-...+.+.++.++|..+
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 7777765543 23444433322 22344566666666665554332 11222 223344556677777788777
Q ss_pred HHHHHHcCCCCCHHHHHHHH-HHHHhcCChHHHH-HHHHHHHHcCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHC
Q 006010 355 LMSMEERKFHVNEYIYSTLI-SGLFKEGKAEDAM-KLWKQMMEKGCKPNTVVYSAL-IDGLCRVGKPDEAEEILFEMINN 431 (664)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~ 431 (664)
+..+...+ ||...|...+ .++.+-.+.-+++ .+|....+.- |.......+ +.......-.+..-+++...++.
T Consensus 242 y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 242 YRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 77777663 3444444433 3333233333333 4454444321 111111111 11111122234444556666666
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----C----------CCCCCHHHH--HHHHHHHHcCCChHHHHHHH
Q 006010 432 GCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAK----N----------NCVYNEVCY--SVLIHGLCEDGKLREARMVW 495 (664)
Q Consensus 432 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~----------~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~ 495 (664)
|+++- +..+...|-.-...+-..++...+.. . .-+|....| -.++..+-..|+++.|...+
T Consensus 318 g~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI 394 (700)
T KOG1156|consen 318 GVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI 394 (700)
T ss_pred CCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 65432 22222222211111101111111110 0 014555544 45677788899999999999
Q ss_pred HHHHhCCCCcCH-HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006010 496 TQMLSRGCKPDV-VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRG 574 (664)
Q Consensus 496 ~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 574 (664)
+..+++ .|+. .-|..=.+.+...|++++|..+++++.+.+ .+|..+=..-..-..+.++.++|..+.....+.|
T Consensus 395 d~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD---~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 395 DLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD---TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 999875 5664 455666788889999999999999985432 2355544456666778899999999998888766
Q ss_pred CCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHH
Q 006010 575 CDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVM 626 (664)
Q Consensus 575 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (664)
. +......-++. ..|.-+=|..|.++|++..|.+=|..+
T Consensus 470 ~--~~~~~L~~mqc-----------mWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 470 F--GAVNNLAEMQC-----------MWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred c--chhhhHHHhhh-----------HHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 4 32222222222 222233344577777776666544443
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=7.8e-11 Score=108.07 Aligned_cols=285 Identities=12% Similarity=0.049 Sum_probs=149.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 006010 275 NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARV 354 (664)
Q Consensus 275 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 354 (664)
.|+|.+|+++..+..+.+.. ....|..-..+.-..|+.+.+-.++.++-+..-.++.....+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 56777777777665555433 23345555556666677777777776666542234444555555666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCChhHHHHHHHH
Q 006010 355 LMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTV-------VYSALIDGLCRVGKPDEAEEILFE 427 (664)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~ 427 (664)
++++.+.++. +.........+|.+.|++.....++..+.+.|.-.+.. +|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 6666665544 44555666666666666666666666666665543332 333333333333333332233333
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCH
Q 006010 428 MINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDV 507 (664)
Q Consensus 428 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 507 (664)
...+ ...++.....++.-+.+.|+.++|.++..+..+.+..++.. ..-.+.+-++...-++..++-.... +-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 3222 23344455555555555556666655555555554333311 1122334444444444444433321 1223
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010 508 VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMM 571 (664)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 571 (664)
..+.+|...|.+.+.+.+|...|+.+++ ..|+..+|+.+.+++.+.|+..+|.++.++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~----~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK----LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh----cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4555555555555555555555555532 33455555555555555555555555555544
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.53 E-value=1.1e-08 Score=99.95 Aligned_cols=466 Identities=13% Similarity=0.092 Sum_probs=300.6
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 006010 85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVI 164 (664)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (664)
++..-+.-+...+++....+..+.+++.. +....++....-.+...|+-++|.......+. +...+...|..++-.+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHH
Confidence 33344445667788899999998888844 33455666666667788999999999887754 4566778899888888
Q ss_pred HHcCCHhHHHHHHHHHHhcccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 006010 165 IQEGLYHRALEFYNHIVNAKHMNILP-NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRL 243 (664)
Q Consensus 165 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 243 (664)
....++++|+++|..++. +.| |...+.-+.-.-.+.|+++.....-..+.+.. +.....|..+..++.-.|+.
T Consensus 86 R~dK~Y~eaiKcy~nAl~-----~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALK-----IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred hhhhhHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHH
Confidence 888999999999999987 334 55677777667778888888888877777663 33456788888889999999
Q ss_pred hHHHHHHHHHHhCC-CCCCHHHHHHHH------HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 006010 244 DEAVLLLDEMQVDG-CFPTPVTFNVLI------NGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKA 316 (664)
Q Consensus 244 ~~a~~~~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 316 (664)
..|..++++..+.. -.|+...|.... ......|..+.|++.+..-... +......-..-...+.+.+++++|
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 99999999887654 246666554433 3345678888888877664332 111222333455677889999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHH-HHHhcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006010 317 VSLLDRMVASKCMPNEVTYGTIIN-GLVKLGRAVDGA-RVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMM 394 (664)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 394 (664)
..++..++.. .||..-|...+. ++.+..+.-++. .++....+.-.. ....-..=+.......-.+..-+++..+.
T Consensus 239 ~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 239 VKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 9999999987 466665555444 443344444444 555555443111 11111111111111222444556677777
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CC----------CCCCHHHH--HHHHHHHHhcCChHHHHH
Q 006010 395 EKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMIN----NG----------CAANAFTY--SSLMKGFFESGKGHKAVE 458 (664)
Q Consensus 395 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~~~~~~a~~ 458 (664)
+.|+++- +..+...|-.....+-..++.-.+.. .| -+|....| -.++..|-+.|+++.|..
T Consensus 316 ~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 316 SKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred hcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 7776543 22333323221111111111111111 11 14444444 456778889999999999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcC
Q 006010 459 IWKDMAKNNCVYNE-VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLE 537 (664)
Q Consensus 459 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (664)
.++..+.+. |+. ..|..-.+.+...|++++|..++++..+.+ .||...-.--+.-..++++.++|.++.... ..
T Consensus 393 yId~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skF--Tr 467 (700)
T KOG1156|consen 393 YIDLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKF--TR 467 (700)
T ss_pred HHHHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHh--hh
Confidence 999998754 554 467677788999999999999999998875 456544445666677899999999999888 33
Q ss_pred CCC--CCCH----hHHHHH--HHHHHHcCChhHHHHHHHHHH
Q 006010 538 PKS--QPDV----FTYNIL--LNALCKQSNISHSIDLLNSMM 571 (664)
Q Consensus 538 ~~~--~~~~----~~~~~l--~~~~~~~g~~~~A~~~~~~~~ 571 (664)
.+. ..|. -.|-.+ ..+|.++|++..|++-|..+.
T Consensus 468 ~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 468 EGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred cccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 332 1111 123322 246778888888776555544
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.4e-08 Score=92.11 Aligned_cols=410 Identities=13% Similarity=0.036 Sum_probs=188.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHhcccCCCCcCHHHH
Q 006010 117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEG-LYHRALEFYNHIVNAKHMNILPNTLTF 195 (664)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~ 195 (664)
+.+.....+.+|...++-+.|+......+.. ....-.+.++..+.+.| +-.++.--|...+... ..-
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t----~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec--------p~a 163 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPT----LRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC--------PMA 163 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCcc----ccchhHHHHHHHHHhccccccHHHHhhhHHHHhc--------chH
Confidence 4456677888888899999999887766432 22223344444443333 2223333333333210 011
Q ss_pred HHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 006010 196 NLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLC--KENRLDEAVLLLDEMQVD-GCFPTPVTFNVLINGL 272 (664)
Q Consensus 196 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~ 272 (664)
-..|.+..+.+ +..+...=..|-...++|........+.++. -.++-..+...+-.+... .++-++.....+.+.+
T Consensus 164 L~~i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~ 242 (564)
T KOG1174|consen 164 LQVIEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCL 242 (564)
T ss_pred HHHHHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhh
Confidence 11122222211 0111111111222222333333333333332 234444444443333222 2344566667777777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHH
Q 006010 273 CKNGELGRAAKLVDNMFLKGCLPNE-VTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDG 351 (664)
Q Consensus 273 ~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 351 (664)
...|+.++|+..|++.... .|+. .........+...|+++....+...+.... .-....|-.-+.......+++.|
T Consensus 243 ~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rA 319 (564)
T KOG1174|consen 243 YYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERA 319 (564)
T ss_pred hhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHH
Confidence 7777777777777776544 2222 222222333445566666555555554331 11112222222223333444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006010 352 ARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINN 431 (664)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 431 (664)
+.+-++..+.+.. +...+-.-...+...|++++|.-.|+.++..
T Consensus 320 L~~~eK~I~~~~r------------------------------------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 320 LNFVEKCIDSEPR------------------------------------NHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHhccCcc------------------------------------cchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 4444444433221 2222322233344455555555555555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-cCCChHHHHHHHHHHHhCCCCcCH-H
Q 006010 432 GCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLI-HGLC-EDGKLREARMVWTQMLSRGCKPDV-V 508 (664)
Q Consensus 432 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~~-~ 508 (664)
. |.+...|..|+..|...|++.+|.-.-+...+.- +.+..+.+.+. ..+. ...--++|.+++++.+.. .|+- .
T Consensus 364 a-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~ 439 (564)
T KOG1174|consen 364 A-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTP 439 (564)
T ss_pred c-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHH
Confidence 2 3344555555555555555555544444333321 23333333331 1121 112235566666655542 4442 3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010 509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA 588 (664)
Q Consensus 509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 588 (664)
..+.+...+...|..+.++.++++.+. ..||....+.|.+.+...+.+.+|.+.|..++. +.|+...-.--++.
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~----~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLI----IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTLRGLRL 513 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHh----hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHHHHHHH
Confidence 444555556666666666666666642 445666666666666666666666666666665 55555443333333
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.47 E-value=2.2e-08 Score=99.88 Aligned_cols=404 Identities=10% Similarity=0.012 Sum_probs=253.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006010 223 CEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNT 302 (664)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 302 (664)
+.-|...|..+.-++...|+++.+.+.|++.... +.-....|+.+...|...|.-..|..+++.-......|+..+--.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3447777888888888889999999999887653 233567788888888888888888888887665543354443333
Q ss_pred HHH-HHH-hcCChHHHHHHHHHHHHC--CC--CCChhhHHHHHHHHHhc-----------CChhHHHHHHHHHHHcCCCC
Q 006010 303 LIH-GLC-LKGNLDKAVSLLDRMVAS--KC--MPNEVTYGTIINGLVKL-----------GRAVDGARVLMSMEERKFHV 365 (664)
Q Consensus 303 l~~-~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 365 (664)
++. .|. +.+.+++++++-.++... +. ...+..|..+.-+|... ....++.+.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 333 332 456777777777666652 11 12333444444444322 1234566777777766544
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010 366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMK 445 (664)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 445 (664)
|......+.--|+..++.+.|....++..+.+...+...|..+.-.+...+++.+|+.+.+.....- +.|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 3333333444566778899999999998888666788888888888888899999998888777641 111111111111
Q ss_pred HHHhcCChHHHHHHHHHHHHC----------------------------CCCCCHHHHHHHHHHHHcCC---ChHHHHHH
Q 006010 446 GFFESGKGHKAVEIWKDMAKN----------------------------NCVYNEVCYSVLIHGLCEDG---KLREARMV 494 (664)
Q Consensus 446 ~~~~~~~~~~a~~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~g---~~~~A~~~ 494 (664)
.-...++.++++.....+... .......++..+..-....+ ..+..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~--- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK--- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---
Confidence 122234444444332222110 00011112222221111110 01111
Q ss_pred HHHHHhCCCC--cC------HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHH
Q 006010 495 WTQMLSRGCK--PD------VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDL 566 (664)
Q Consensus 495 ~~~~~~~~~~--p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 566 (664)
+....+. |+ ...|......+.+.+..++|...+.++-+.. .-....|......+...|.+++|.+.
T Consensus 633 ---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~---~l~~~~~~~~G~~~~~~~~~~EA~~a 706 (799)
T KOG4162|consen 633 ---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID---PLSASVYYLRGLLLEVKGQLEEAKEA 706 (799)
T ss_pred ---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc---hhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence 1111112 22 2345566777888999999998888874322 22455677777788889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHH--HHHHHHHcCCCCChHHHHHHHHH
Q 006010 567 LNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFK--IVEVMLQKFLSPQTSTWERVVQE 644 (664)
Q Consensus 567 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~ 644 (664)
|..... +.|+.+-....+..+ +.+.|+..-|.+ ++..+.+. -+.+++.|..++..
T Consensus 707 f~~Al~--ldP~hv~s~~Ala~~--------------------lle~G~~~la~~~~~L~dalr~-dp~n~eaW~~LG~v 763 (799)
T KOG4162|consen 707 FLVALA--LDPDHVPSMTALAEL--------------------LLELGSPRLAEKRSLLSDALRL-DPLNHEAWYYLGEV 763 (799)
T ss_pred HHHHHh--cCCCCcHHHHHHHHH--------------------HHHhCCcchHHHHHHHHHHHhh-CCCCHHHHHHHHHH
Confidence 999987 788876544444443 888998888888 99999986 35588999999999
Q ss_pred hcccchHHHHHHHHHhh
Q 006010 645 LCRPKRIQAAINKCWSN 661 (664)
Q Consensus 645 ~~~~g~~~~A~~~~~~~ 661 (664)
+-+.|+.++|.+.|+-.
T Consensus 764 ~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 764 FKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHccchHHHHHHHHHH
Confidence 99999999999988754
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=8.9e-09 Score=99.37 Aligned_cols=455 Identities=15% Similarity=0.120 Sum_probs=269.0
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 006010 84 STFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNV 163 (664)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (664)
+.+.+-++.+...|++++|.+....++..+ +.+..++..-+.++.+.++|++|+++...-.. ...+...+---+.+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHHHH
Confidence 566777888999999999999999999877 55777888888888999999999976654311 11111111233445
Q ss_pred HHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHH--HHHHHHHHHHhcC
Q 006010 164 IIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIY--TYCTLMDGLCKEN 241 (664)
Q Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g 241 (664)
..+.+..++|+..++-.-+ .+..+...-...+.+.|++++|..+|+.+.+.+. +|.. .-..++.+-.
T Consensus 89 ~Yrlnk~Dealk~~~~~~~-------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a--- 157 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLDR-------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAA--- 157 (652)
T ss_pred HHHcccHHHHHHHHhcccc-------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHH---
Confidence 5678999999999984322 2344666777888999999999999999987763 2222 1222221111
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChhHHHHHHHHHHHc-------CCCCCH-------HHHHHHH
Q 006010 242 RLDEAVLLLDEMQVDGCFPTPVTFNV---LINGLCKNGELGRAAKLVDNMFLK-------GCLPNE-------VTYNTLI 304 (664)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~~~~~-------g~~p~~-------~~~~~l~ 304 (664)
...+. +.+.... .| ..+|.. ..-.+...|++.+|+++++..... +-.-+. ..-..+.
T Consensus 158 -~l~~~-~~q~v~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 158 -ALQVQ-LLQSVPE---VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred -hhhHH-HHHhccC---CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 11111 2222222 22 223333 334567889999999999988322 111111 1223455
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CCh-h-HHHHHHHHHHHcCC----------CCCHHH
Q 006010 305 HGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKL---GRA-V-DGARVLMSMEERKF----------HVNEYI 369 (664)
Q Consensus 305 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~-~-~a~~~~~~~~~~~~----------~~~~~~ 369 (664)
..+...|+.++|..+|...+... ++|........+-+... .++ + .++..++....... ......
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 56677999999999999999875 44554333332222211 111 1 11222222111100 001111
Q ss_pred H-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006010 370 Y-STLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGL--CRVGKPDEAEEILFEMINNGCAANAFTYSSLMKG 446 (664)
Q Consensus 370 ~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 446 (664)
. +.++..| .+..+.+.++....... .|. ..+..++..+ ++...+..+.+++...-+........+...++..
T Consensus 311 ~N~~lL~l~--tnk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl 385 (652)
T KOG2376|consen 311 RNNALLALF--TNKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQL 385 (652)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHH
Confidence 1 2222222 33344444444333221 223 3334444333 2223577788888777765422235566677778
Q ss_pred HHhcCChHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC--CCCcCH----HhHHH
Q 006010 447 FFESGKGHKAVEIWK--------DMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSR--GCKPDV----VAYSS 512 (664)
Q Consensus 447 ~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~----~~~~~ 512 (664)
....|+++.|.+++. .+.+.+. .+.+...+...+.+.++-+.|..++.+.+.. .-.+.. .++.-
T Consensus 386 ~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~ 463 (652)
T KOG2376|consen 386 KISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMRE 463 (652)
T ss_pred HHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 889999999999998 4554443 3344455666777777777777777666532 001121 23344
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010 513 MIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMM 571 (664)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 571 (664)
++..-.+.|+.++|..+++++++..+ +|......++.+|++. +++.|..+-+.+.
T Consensus 464 aa~f~lr~G~~~ea~s~leel~k~n~---~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 464 AAEFKLRHGNEEEASSLLEELVKFNP---NDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHhCC---chHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 44555678999999999999965444 3788888888888875 6788877766544
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.45 E-value=1.5e-09 Score=107.92 Aligned_cols=431 Identities=13% Similarity=0.060 Sum_probs=218.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHH
Q 006010 117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFN 196 (664)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 196 (664)
+...|..+.-+....|+++.+.+.|++.... .......|..+...+...|.-..|+.+.+...... ..+++...+-
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~--~~ps~~s~~L 397 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS--EQPSDISVLL 397 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc--cCCCcchHHH
Confidence 4556666666667777777777777766432 34455667777777777777777777776665421 1122333444
Q ss_pred HHHHHHHh-cCChhHHHHHHhhccc--CCC--CCCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCC
Q 006010 197 LVIKTVCR-LGLVDNAIQLFREMPV--RNC--EPDIYTYCTLMDGLCKE-----------NRLDEAVLLLDEMQVDGCFP 260 (664)
Q Consensus 197 ~ll~~~~~-~g~~~~A~~~~~~~~~--~~~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~ 260 (664)
..-+.|.+ .|..++++..-.++.. .+. ......|..+.-+|... ....++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 34444433 3555555555544443 110 11233444444444321 1235566777776665422
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006010 261 TPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIIN 340 (664)
Q Consensus 261 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 340 (664)
|+.....+.--|+..++++.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+.+.....- ..|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 3333333444466667777777777777776555567777777777777777777777777665431 111111111122
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC--
Q 006010 341 GLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEK--GCKPNTVVYSALIDGLCRVG-- 416 (664)
Q Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~-- 416 (664)
.-...++.+++......+...-- +..-.. ..++-....+....+.-. .......++..+..-....+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we--~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWE--AEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHH--hhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence 22334555555555444432100 000000 000011111111111100 00001111111111111000
Q ss_pred -ChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChH
Q 006010 417 -KPDEAEEILFEMINNGCAAN------AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLR 489 (664)
Q Consensus 417 -~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 489 (664)
..+.. +....... .|+ ...|......+.+.+..++|...+.+..+.. +.....|......+...|..+
T Consensus 627 ~~se~~---Lp~s~~~~-~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 627 AGSELK---LPSSTVLP-GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred cccccc---cCcccccC-CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhH
Confidence 01111 10000000 011 2344455556666666666666666655543 445555666666666777777
Q ss_pred HHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHH--HHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHH
Q 006010 490 EARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALK--LFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDL 566 (664)
Q Consensus 490 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 566 (664)
+|.+.|...... .|+ +.+..++..++...|+..-|.. ++..+++.++. +...|..+...+.+.|+.++|.+.
T Consensus 702 EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~---n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 702 EAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL---NHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred HHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHccchHHHHHH
Confidence 777777776653 444 3456667777777776655555 77777655544 666777777777777777777777
Q ss_pred HHHHHH
Q 006010 567 LNSMMD 572 (664)
Q Consensus 567 ~~~~~~ 572 (664)
|....+
T Consensus 777 f~aa~q 782 (799)
T KOG4162|consen 777 FQAALQ 782 (799)
T ss_pred HHHHHh
Confidence 777665
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.8e-08 Score=92.91 Aligned_cols=397 Identities=15% Similarity=0.053 Sum_probs=242.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHH-HHhCCCCCCHHHHHHH
Q 006010 191 NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKEN-RLDEAVLLLDE-MQVDGCFPTPVTFNVL 268 (664)
Q Consensus 191 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~-~~~~~~~~~~~~~~~l 268 (664)
+...-...+.+|...++-+.|.....+....- ...--+.++..+.+.| +-.++.--+.+ +.+. +.-...
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrec--p~aL~~---- 166 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIREC--PMALQV---- 166 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhc--chHHHH----
Confidence 34455567778888899999998888776542 1222333333333322 22222222222 2221 111111
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhc
Q 006010 269 INGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGL--CLKGNLDKAVSLLDRMVA-SKCMPNEVTYGTIINGLVKL 345 (664)
Q Consensus 269 i~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~ 345 (664)
|.+..+.+ +..+...=..|......|+..+...-+.++ +-.++...+...+-.+.. .-++-|+.....+.+++...
T Consensus 167 i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~ 245 (564)
T KOG1174|consen 167 IEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYN 245 (564)
T ss_pred HHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhh
Confidence 11111111 111111111222223334333333333333 334444444444433333 23566788888999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006010 346 GRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEIL 425 (664)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 425 (664)
|+.++|...|++....++. +........-.+.+.|+.++...+...+.... +-....|-.-.......++++.|+.+-
T Consensus 246 Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred cCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 9999999999988765322 22223333344567888888888777776542 112233333334445677889999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCc
Q 006010 426 FEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKP 505 (664)
Q Consensus 426 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 505 (664)
++.++.. +.+...+..-...+...|+.++|.-.|+...... |.+..+|..|+.+|...|++.+|..+-...... ++.
T Consensus 324 eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~ 400 (564)
T KOG1174|consen 324 EKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQN 400 (564)
T ss_pred HHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhc
Confidence 9888875 4456666666677888899999999999887765 567889999999999999999998887766654 344
Q ss_pred CHHhHHHHH-HHHH-HcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006010 506 DVVAYSSMI-HGLC-NAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCN 583 (664)
Q Consensus 506 ~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 583 (664)
+..+...+. ..|. ...--++|.+++++.++++|+. ....+.+...+...|..++++.++++.+. ..||....+
T Consensus 401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y---~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~ 475 (564)
T KOG1174|consen 401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY---TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHN 475 (564)
T ss_pred chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc---HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHH
Confidence 556665553 3332 2233578999999987655553 23445667778889999999999999887 678877777
Q ss_pred HHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHH
Q 006010 584 IFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQ 628 (664)
Q Consensus 584 ~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (664)
.+.+. +...+.+++|...|..+..
T Consensus 476 ~Lgd~---------------------~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 476 HLGDI---------------------MRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHH---------------------HHHhhhHHHHHHHHHHHHh
Confidence 66666 6666777777777777665
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.43 E-value=5.9e-09 Score=104.67 Aligned_cols=128 Identities=18% Similarity=0.195 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006010 301 NTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKE 380 (664)
Q Consensus 301 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (664)
..+...|...|++++|++++++.+++. +..+..|..-.+.+-..|++.+|.+.++.....+.. |...-+..+..+.+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHC
Confidence 444555666667777777776666652 223555666666666667777777666666665544 555555666666667
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH--------HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006010 381 GKAEDAMKLWKQMMEKGCKPNTV--------VYSALIDGLCRVGKPDEAEEILFEMIN 430 (664)
Q Consensus 381 ~~~~~a~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~~~~~~a~~~~~~~~~ 430 (664)
|+.++|.+++......+..|... -......+|.+.|++..|++.|..+.+
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777776666665554322111 112334556666666666665555443
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=6.1e-08 Score=93.76 Aligned_cols=466 Identities=15% Similarity=0.118 Sum_probs=245.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q 006010 121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIK 200 (664)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~ 200 (664)
...=+..+...|++++|++...+++.. .+.+..++..-+.++++.++|++|+.+.+.-.. ...+...+.--.-
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~-----~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA-----LLVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch-----hhhcchhhHHHHH
Confidence 334445567889999999999998654 456677788888889999999999966655321 1111111111122
Q ss_pred HHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChh
Q 006010 201 TVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPT-PVTFNVLINGLCKNGELG 279 (664)
Q Consensus 201 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 279 (664)
+..+.+..++|+..++-.. +.|..+...-...+.+.|++++|+++|+.+.+.+.+-- ...-..++.+ +---
T Consensus 88 c~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l 159 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAAL 159 (652)
T ss_pred HHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhh
Confidence 3447899999999998333 22444666777888899999999999999977653311 1111111111 1011
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 006010 280 RAAKLVDNMFLKGCLPNEVTYNTL---IHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLM 356 (664)
Q Consensus 280 ~a~~~~~~~~~~g~~p~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 356 (664)
.+. + +......| ..+|..+ ...+...|++.+|+++++...+.+.. .+ ..++.. -..+-.
T Consensus 160 ~~~-~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l-~~~d~~-eEeie~ 221 (652)
T KOG2376|consen 160 QVQ-L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KL-EDEDTN-EEEIEE 221 (652)
T ss_pred hHH-H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hh-cccccc-hhhHHH
Confidence 111 1 22222222 2234333 33556789999999999888443200 00 000000 000000
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHhcCChhH--HHHHH------
Q 006010 357 SMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALID---GLCRVGKPDE--AEEIL------ 425 (664)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~--a~~~~------ 425 (664)
++ ...-..+..++...|+.++|..++..+++.... |........+ +.....++-. ++..+
T Consensus 222 el--------~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~ 292 (652)
T KOG2376|consen 222 EL--------NPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK 292 (652)
T ss_pred HH--------HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHH
Confidence 00 011223334444556666666666655554322 2221111111 1111111110 11111
Q ss_pred ------HHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--cCCChHHHHHHHH
Q 006010 426 ------FEMINNGCAANAFTY-SSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLC--EDGKLREARMVWT 496 (664)
Q Consensus 426 ------~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~ 496 (664)
..+... ....... +.++..| .+..+.+.++....... .|. ..+..++.... +...+.+|.+++.
T Consensus 293 l~~~~l~~Ls~~--qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~ 365 (652)
T KOG2376|consen 293 LAEFLLSKLSKK--QKQAIYRNNALLALF--TNKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLL 365 (652)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 111110 0011111 2222222 23334444443332211 122 23333333322 2235778888887
Q ss_pred HHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhh------cCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 006010 497 QMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLC------LEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSM 570 (664)
Q Consensus 497 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 570 (664)
..-+....-...+...++......|+++.|.+++...+. .+.+. .+.+...+...+.+.++-+-|..++.+.
T Consensus 366 ~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~A 443 (652)
T KOG2376|consen 366 QFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSA 443 (652)
T ss_pred HHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHH
Confidence 776653222245666777788899999999999982210 22233 3345556777788888877788888777
Q ss_pred HHC--CCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhccc
Q 006010 571 MDR--GCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRP 648 (664)
Q Consensus 571 ~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 648 (664)
+.. .-.+.......++.- .+..-.+.|+-++|..+++++.+. .++|..+...++.+|++.
T Consensus 444 i~~~~~~~t~s~~l~~~~~~-----------------aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 444 IKWWRKQQTGSIALLSLMRE-----------------AAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHHHhcccchHHHhHHHH-----------------HhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc
Confidence 742 112222333333332 222256679999999999999986 477889999999998876
Q ss_pred chHHHHHH
Q 006010 649 KRIQAAIN 656 (664)
Q Consensus 649 g~~~~A~~ 656 (664)
. .+.|..
T Consensus 506 d-~eka~~ 512 (652)
T KOG2376|consen 506 D-PEKAES 512 (652)
T ss_pred C-HHHHHH
Confidence 3 444444
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=5.5e-11 Score=105.56 Aligned_cols=234 Identities=12% Similarity=0.097 Sum_probs=187.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHH
Q 006010 335 YGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVV-YSALIDGLC 413 (664)
Q Consensus 335 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~ 413 (664)
-+.+.++|.+.|-+.+|.+.++...+.. |-..+|..|-.+|.+..+++.|+.++.+-.+. .|..+| ...+...+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 3567888899999999998888877764 34557777888899999999999998887765 344444 445666777
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 006010 414 RVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARM 493 (664)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 493 (664)
..++.++|.++++...+.. +.++.....+...|.-.++++-|+.+++++...| ..+...|+.+.-+|.-.++++-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHH
Confidence 8889999999999988874 6677777788888888999999999999999988 5678888888888888999999999
Q ss_pred HHHHHHhCCCCcCH--HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010 494 VWTQMLSRGCKPDV--VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMM 571 (664)
Q Consensus 494 ~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 571 (664)
.|++.+..-..|+. .+|-.+.......|++.-|.+.|+-++..++. +...++.|.-.-.+.|++++|..+++...
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~---h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ---HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc---hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 99988876555553 57888888888899999999999988643333 56678888888889999999999999888
Q ss_pred HCCCCCCH
Q 006010 572 DRGCDPDL 579 (664)
Q Consensus 572 ~~~~~p~~ 579 (664)
. +.|+.
T Consensus 457 s--~~P~m 462 (478)
T KOG1129|consen 457 S--VMPDM 462 (478)
T ss_pred h--hCccc
Confidence 6 56654
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=3.1e-10 Score=105.52 Aligned_cols=199 Identities=13% Similarity=0.083 Sum_probs=111.2
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q 006010 83 DSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLN 162 (664)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (664)
...+..+...+...|++++|...++++.... +.+...+..++..+...|++++|++.|++.... .+.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 4456666666677777777777777666554 224455666666666677777777777666543 2334455666666
Q ss_pred HHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 006010 163 VIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENR 242 (664)
Q Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 242 (664)
.+...|++++|.+.++.+.... ........+..+...+...|++++|.+.+++..... +.+...+..+...+...|+
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDP--LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC
Confidence 6666677777777666665411 011122334445555555566666666665555442 2234455555555555555
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010 243 LDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM 288 (664)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (664)
+++|...+++.... .+.+...+..+...+...|+.++|..+.+.+
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555555443 1233444444455555555555555555444
No 71
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.38 E-value=2.6e-09 Score=107.63 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=48.2
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006010 329 MPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSAL 408 (664)
Q Consensus 329 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 408 (664)
.|++.+|..++++-...|+.+.|..++.+|.+.|++.+..-|-.++-+ .++...+..+++-|.+.|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 355666666666666666666666666666666665555544444433 55555555666666666666666666555
Q ss_pred HHHHHh
Q 006010 409 IDGLCR 414 (664)
Q Consensus 409 i~~~~~ 414 (664)
+..+..
T Consensus 278 vip~l~ 283 (1088)
T KOG4318|consen 278 VIPQLS 283 (1088)
T ss_pred HHhhhc
Confidence 544444
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.38 E-value=4.6e-08 Score=98.35 Aligned_cols=293 Identities=18% Similarity=0.167 Sum_probs=166.9
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhc
Q 006010 161 LNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKE 240 (664)
Q Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (664)
...+...|++++|++.++...+ .+.............+.+.|+.++|..++..+++++ +.+..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~----~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK----QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh----hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhh
Confidence 3344555666666665555432 122223344445555555666666666666665554 33333333333333211
Q ss_pred -----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006010 241 -----NRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELG-RAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLD 314 (664)
Q Consensus 241 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 314 (664)
.+.+...++++++...- |.......+.-.+.....+. .+...+..+..+|++ .+|+.+-..|....+.+
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 13445555666554432 22222222211111111222 233444455555543 23444444444444444
Q ss_pred HHHHHHHHHHHC----C----------CCCChh--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006010 315 KAVSLLDRMVAS----K----------CMPNEV--TYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLF 378 (664)
Q Consensus 315 ~a~~~~~~~~~~----~----------~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (664)
-..+++...... + -+|... ++..+...|...|++++|++.+++..+..+. ....|..-...+-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHH
Confidence 444444444321 1 123332 3455677788889999999999988887543 4667888888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHHhc
Q 006010 379 KEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANA--------FTYSSLMKGFFES 450 (664)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~ 450 (664)
..|++++|.+.++.....+.. |...-+..+..+.+.|++++|.+++....+.+..|.. ........+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988887654 7777777788888899999999988888776532221 1224456678888
Q ss_pred CChHHHHHHHHHHHH
Q 006010 451 GKGHKAVEIWKDMAK 465 (664)
Q Consensus 451 ~~~~~a~~~~~~~~~ 465 (664)
|++..|++.|..+.+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888877766654
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=7e-10 Score=115.62 Aligned_cols=251 Identities=12% Similarity=0.044 Sum_probs=165.8
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHH---------cCCHhHHHHHHHHHHhcccCCCCc-CHHHHHHHHHH
Q 006010 132 HLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQ---------EGLYHRALEFYNHIVNAKHMNILP-NTLTFNLVIKT 201 (664)
Q Consensus 132 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~ 201 (664)
+.+++|+..|++.++. .+.+...|..+..++.. .+++++|...++++++ ..| +...+..+...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~-----ldP~~~~a~~~lg~~ 347 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE-----LDHNNPQALGLLGLI 347 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh-----cCCCCHHHHHHHHHH
Confidence 4567888888888764 33455666666655442 2347889999988887 333 45577777778
Q ss_pred HHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006010 202 VCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRA 281 (664)
Q Consensus 202 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 281 (664)
+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.+.. +...+..++..+...|++++|
T Consensus 348 ~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 348 NTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHH
Confidence 888899999999999888775 556777888888888899999999999988876422 222333344456667888999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010 282 AKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEER 361 (664)
Q Consensus 282 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 361 (664)
...++++.....+-+...+..+..++...|+.++|...++++.... +.+....+.+...|+..| +.+...++.+.+.
T Consensus 426 ~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 426 IRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9988887765322244556777778888899999999888876541 223334455555666666 4666666665543
Q ss_pred C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006010 362 K-FHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKG 397 (664)
Q Consensus 362 ~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 397 (664)
. -.+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 503 ~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 503 EQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 1 11111222 33334445666666555 7776653
No 74
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.37 E-value=7.7e-09 Score=105.56 Aligned_cols=181 Identities=13% Similarity=0.085 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006010 384 EDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDM 463 (664)
Q Consensus 384 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 463 (664)
..|+..+.+..+.. ..+..+|+.|.-. ...|++.-+...|-+.+... +....+|..+.-.+.+..+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 45677777666542 2356667666554 55677777777776666553 556677777777888888889998888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH--HH--hCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHH-------
Q 006010 464 AKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQ--ML--SRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNE------- 532 (664)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~--~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~------- 532 (664)
.... |.+...|-.........|+.-++..+|.. .. ..|-.|+..-|.+........|+.++-+...+.
T Consensus 877 qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 7765 55666676655555677777777777765 22 223345544454444455566665554333322
Q ss_pred ---hhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010 533 ---MLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMM 571 (664)
Q Consensus 533 ---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 571 (664)
.+. +.+-+...|...+....+.+.+.+|.....+..
T Consensus 956 l~~yf~---~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 956 LSYYFL---GHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHh---cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 221 222245567777777777777777777777655
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.37 E-value=9.4e-10 Score=114.68 Aligned_cols=215 Identities=13% Similarity=0.030 Sum_probs=141.3
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006010 348 AVDGARVLMSMEERKFHVNEYIYSTLISGLF---------KEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKP 418 (664)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 418 (664)
.++|...+++..+..+. +...+..+..++. ..+++++|...+++..+.+.. +...+..+...+...|++
T Consensus 277 ~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCH
Confidence 45666666666665433 3444444444333 224477888888888776433 566777777777788888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 006010 419 DEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQM 498 (664)
Q Consensus 419 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (664)
++|...++++++.+ +.+...+..+...+...|++++|...+++..+.+ |.+...+..++..+...|++++|...++++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 88888888888775 5566777778888888888888888888888766 223333333444456678888888888887
Q ss_pred HhCCCCc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 499 LSRGCKP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 499 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
.... .| +...+..+..++...|++++|...+.++....+ .+...++.+...|...| ++|...++++.+
T Consensus 433 l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 433 RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI---TGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc---hhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 7643 23 344566677777888888888888887642211 13344555556666666 467776766664
No 76
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.35 E-value=4.3e-08 Score=100.29 Aligned_cols=444 Identities=13% Similarity=0.068 Sum_probs=267.9
Q ss_pred cchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 006010 99 FKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYN 178 (664)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 178 (664)
...+...|-+..+..+. -..+|..+...|....+...|.+-|++..+. ...+..++..+...|++..+++.|..+.-
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 55556666666665543 3447888888888888888899999888654 45567788889999999999999988844
Q ss_pred HHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006010 179 HIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGC 258 (664)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 258 (664)
..-+..+.+ .-...|..+.-.|.+.++...|..-|+...+.. +.|...|..++.+|.+.|++..|+++|.++...
T Consensus 551 ~~~qka~a~--~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 551 RAAQKAPAF--ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHhhhchHH--HHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 433211100 111233345556777888999999999888775 567888999999999999999999999888764
Q ss_pred CCCHHHHHHH--HHHHHhcCChhHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----
Q 006010 259 FPTPVTFNVL--INGLCKNGELGRAAKLVDNMFLK------GCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVA----- 325 (664)
Q Consensus 259 ~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~~~~~------g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----- 325 (664)
.|+. .|... .-..+..|.+.+|+..+...... +..--..++..+...+...|-..++...+++.++
T Consensus 626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 2332 23222 23456778899998888876543 1111223343344444444544445555444332
Q ss_pred --CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---H---HHHHHHHHHHHcC
Q 006010 326 --SKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKA---E---DAMKLWKQMMEKG 397 (664)
Q Consensus 326 --~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~ 397 (664)
+....+...|-.+.++| .+|-... .+ .|+......+..-.-..+.. | -+.+.+-.-.+
T Consensus 705 l~h~~~~~~~~Wi~asdac----------~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls-- 770 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDAC----------YIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS-- 770 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHH----------HHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--
Confidence 21122333333322222 2222222 11 11211111111111111111 1 01111111111
Q ss_pred CCCCHHHHHHHHHHHHh----c----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 006010 398 CKPNTVVYSALIDGLCR----V----GKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCV 469 (664)
Q Consensus 398 ~~~~~~~~~~li~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 469 (664)
...+..+|..++..|.+ . .+...|...+.+.++.. ..+..+|+.|.-. ...|.+.-+...|-+-.... +
T Consensus 771 l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p 847 (1238)
T KOG1127|consen 771 LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-P 847 (1238)
T ss_pred HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-c
Confidence 11234555555554433 1 23346778888877763 4466777777655 66677877777776665554 5
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHH--hhhcCCCCCCCHhHH
Q 006010 470 YNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNE--MLCLEPKSQPDVFTY 547 (664)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~ 547 (664)
.+..+|..+...+....+++.|...|...+... +.+...|..........|+.-++..+|.. .++...+..++...|
T Consensus 848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred cchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 667788888888999999999999999988753 33456777776667788998899998876 444555666676666
Q ss_pred HHHHHHHHHcCChhHHHHHHHH
Q 006010 548 NILLNALCKQSNISHSIDLLNS 569 (664)
Q Consensus 548 ~~l~~~~~~~g~~~~A~~~~~~ 569 (664)
-.........|+.++-+...++
T Consensus 927 ~c~te~h~~Ng~~e~~I~t~~k 948 (1238)
T KOG1127|consen 927 LCATEIHLQNGNIEESINTARK 948 (1238)
T ss_pred HHHHHHHHhccchHHHHHHhhh
Confidence 6666666677776665544443
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=8.2e-10 Score=102.63 Aligned_cols=166 Identities=17% Similarity=0.165 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006010 403 VVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGL 482 (664)
Q Consensus 403 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 482 (664)
..+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 334444555555555555555555555442 3344455555555566666666666666555543 33444555555566
Q ss_pred HcCCChHHHHHHHHHHHhCCCCc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChh
Q 006010 483 CEDGKLREARMVWTQMLSRGCKP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNIS 561 (664)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 561 (664)
...|++++|.+.++++......+ ....+..+...+...|++++|...+++++...+. +...+..+...+...|+++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ---RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---ChHHHHHHHHHHHHcCCHH
Confidence 66666666666666665432111 2334555566666667777777777666543222 3445556666666667777
Q ss_pred HHHHHHHHHHHC
Q 006010 562 HSIDLLNSMMDR 573 (664)
Q Consensus 562 ~A~~~~~~~~~~ 573 (664)
+|...++++.+.
T Consensus 187 ~A~~~~~~~~~~ 198 (234)
T TIGR02521 187 DARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHh
Confidence 777776666653
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=2.3e-10 Score=101.75 Aligned_cols=236 Identities=11% Similarity=0.080 Sum_probs=197.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010 366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMK 445 (664)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 445 (664)
|-.--+.+..+|.+.|.+.+|.+.++...++ .|-+.||..+-.+|.+..+++.|+.++.+-++. ++-++.....+.+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 4445578899999999999999999998887 466778888999999999999999999999887 3667777778888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHH
Q 006010 446 GFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEE 525 (664)
Q Consensus 446 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 525 (664)
.+...++.++|.++++...+.. +.++....++...|.-.++++-|+..+.++++.|+. +...|+.+.-+|.-.+++|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 9999999999999999999876 667778888888999999999999999999999964 77899999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHhhhhhccCCCCchhhhH
Q 006010 526 ALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL-VTCNIFLTALKEKLEAPQDGTDFLN 604 (664)
Q Consensus 526 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~ 604 (664)
++.-|+++++.......-...|..+.......|++.-|.+.|+-.+.. .|+. ..++.+.
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLa------------------ 436 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLA------------------ 436 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHH------------------
Confidence 999999996544332334557888888888999999999999988863 3333 3344333
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 605 ELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
..-.+.|+.++|..++..+...
T Consensus 437 ---vL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 437 ---VLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred ---HHHhhcCchHHHHHHHHHhhhh
Confidence 3378899999999999998764
No 79
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.3e-06 Score=88.08 Aligned_cols=339 Identities=15% Similarity=0.153 Sum_probs=202.8
Q ss_pred HHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 006010 281 AAKLVDNMFLKGCL--PNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASK--CMPNEVTYGTIINGLVKLGRAVDGARVLM 356 (664)
Q Consensus 281 a~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 356 (664)
-.+++++....+++ .|+......+.++...+-..+-+++++++.-.. +.-+...-+.++-...+ -+.....+..+
T Consensus 966 rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~ 1044 (1666)
T KOG0985|consen 966 RRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYIN 1044 (1666)
T ss_pred HHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHH
Confidence 45566666554332 355566677888888888889899998886431 11112222223222222 22333334444
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----------------------CCCCCHHHHHHHHHHHHh
Q 006010 357 SMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEK----------------------GCKPNTVVYSALIDGLCR 414 (664)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------~~~~~~~~~~~li~~~~~ 414 (664)
++..-+.+ .+...+...+-+++|..+|++.... .+ ..+..|+.+..+-.+
T Consensus 1045 rLdnyDa~-------~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~-n~p~vWsqlakAQL~ 1116 (1666)
T KOG0985|consen 1045 RLDNYDAP-------DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERC-NEPAVWSQLAKAQLQ 1116 (1666)
T ss_pred HhccCCch-------hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhh-CChHHHHHHHHHHHh
Confidence 43322111 1112222233334444433332100 01 145567777777777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 006010 415 VGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMV 494 (664)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 494 (664)
.|...+|++-|-++ .|+..|..+++...+.|.+++-.+++....+..-.|.. -+.|+-+|++.++..+..++
T Consensus 1117 ~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred cCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHH
Confidence 77777777655432 36677777778878888888877777766665433333 34577777777776665444
Q ss_pred HHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006010 495 WTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRG 574 (664)
Q Consensus 495 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 574 (664)
. .-|+......+.+-|...|.++.|.-+|... ..|..+...+...|++..|.+.-+++-
T Consensus 1189 i-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-----------SN~a~La~TLV~LgeyQ~AVD~aRKAn--- 1247 (1666)
T KOG0985|consen 1189 I-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV-----------SNFAKLASTLVYLGEYQGAVDAARKAN--- 1247 (1666)
T ss_pred h-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHhhhcc---
Confidence 3 2467666777777777777787777777644 347777777888888888877666554
Q ss_pred CCCCHHHHHHHHHhhhhhccCC--C-------CchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCC-CChHHHHHHHHH
Q 006010 575 CDPDLVTCNIFLTALKEKLEAP--Q-------DGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLS-PQTSTWERVVQE 644 (664)
Q Consensus 575 ~~p~~~~~~~ll~~~~~~~~~~--~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~ 644 (664)
+..||..+-.+|.+..+.. + --.+-+++|..-|-..|.+++-+.+++.... +. .-...+..|+..
T Consensus 1248 ---s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG--LERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1248 ---STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG--LERAHMGMFTELAIL 1322 (1666)
T ss_pred ---chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc--hhHHHHHHHHHHHHH
Confidence 4457777777775443210 0 0012256788889999999999998888763 33 344777777777
Q ss_pred hc--ccchHHHHHHHHHhhh
Q 006010 645 LC--RPKRIQAAINKCWSNL 662 (664)
Q Consensus 645 ~~--~~g~~~~A~~~~~~~l 662 (664)
|. +..+.-|=++.||..+
T Consensus 1323 Yskykp~km~EHl~LFwsRv 1342 (1666)
T KOG0985|consen 1323 YSKYKPEKMMEHLKLFWSRV 1342 (1666)
T ss_pred HHhcCHHHHHHHHHHHHHhc
Confidence 75 4567888888888754
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=7.1e-09 Score=88.23 Aligned_cols=206 Identities=13% Similarity=0.088 Sum_probs=153.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 006010 405 YSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCE 484 (664)
Q Consensus 405 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 484 (664)
...+.-.|...|+...|..-++++++.. +.+..++..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4446667888888888888888888875 5667788888888888888888888888888876 5566778888888888
Q ss_pred CCChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHH
Q 006010 485 DGKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHS 563 (664)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 563 (664)
.|++++|...|++....-.-|. ..+|..+..+..+.|+.+.|..+|++.+..++.. ......+.....+.|++..|
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~---~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF---PPALLELARLHYKAGDYAPA 192 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC---ChHHHHHHHHHHhcccchHH
Confidence 8899999998888886422222 3578888888888899999999999887666653 33455677777888899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHH
Q 006010 564 IDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWE 639 (664)
Q Consensus 564 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 639 (664)
..++++....+. ++..+....+.. -...|+-+.+.++=.++.+. .|.+.-+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iri---------------------ak~~gd~~~a~~Y~~qL~r~--fP~s~e~q 244 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRI---------------------AKRLGDRAAAQRYQAQLQRL--FPYSEEYQ 244 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHH---------------------HHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 888888887644 666665555554 55678877777777777663 44444433
No 81
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=4.4e-06 Score=86.03 Aligned_cols=534 Identities=11% Similarity=0.160 Sum_probs=277.7
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHH
Q 006010 87 YSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQ 166 (664)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (664)
..++..++..|+++.+.-.. .+.|..|+ |..+++...+ -..+++.++...+....+ .....+.+...+..
T Consensus 485 ~KVi~cfAE~Gqf~KiilY~---kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~---~~~die~I~DlFme 554 (1666)
T KOG0985|consen 485 AKVIQCFAETGQFKKIILYA---KKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEE---PLADIEQIVDLFME 554 (1666)
T ss_pred HHHHHHHHHhcchhHHHHHH---HHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCC---CcccHHHHHHHHHH
Confidence 34567777777777665433 33444433 4455555545 568888888877765432 22234555566666
Q ss_pred cCCHhHHHHHHHHHHhcccCCCCcCHH------------------------------HHHHHHHHHHhcCChhHHHHHHh
Q 006010 167 EGLYHRALEFYNHIVNAKHMNILPNTL------------------------------TFNLVIKTVCRLGLVDNAIQLFR 216 (664)
Q Consensus 167 ~~~~~~A~~~~~~~~~~~~~~~~~~~~------------------------------~~~~ll~~~~~~g~~~~A~~~~~ 216 (664)
.+..+.+..+.-.+++ +..|+.. -+..+...|.+.|-..+|++.+.
T Consensus 555 ~N~iQq~TSFLLdaLK----~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehyt 630 (1666)
T KOG0985|consen 555 LNLIQQCTSFLLDALK----LNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYT 630 (1666)
T ss_pred HHhhhhhHHHHHHHhc----CCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcc
Confidence 6666666666655554 1223222 12344455666666666666666
Q ss_pred hcccCCCCCCHHHHHH-----HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010 217 EMPVRNCEPDIYTYCT-----LMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK 291 (664)
Q Consensus 217 ~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (664)
.+... +. ....+. .+-.|.-.-.++++.+.++.|...++..+..+.-.+..-|...=-.+..+++|+....-
T Consensus 631 Dl~DI--KR-~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~ 707 (1666)
T KOG0985|consen 631 DLYDI--KR-VVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSY 707 (1666)
T ss_pred cHHHH--HH-HHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccc
Confidence 55322 11 111111 12334444456677777777777666666666666666666666666777777765432
Q ss_pred -----------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH------------HHC---------------CCCCChh
Q 006010 292 -----------GCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRM------------VAS---------------KCMPNEV 333 (664)
Q Consensus 292 -----------g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~------------~~~---------------~~~~~~~ 333 (664)
+..-|+...-..|.+.|+.|++.+..++.++- .+. ++.+|..
T Consensus 708 eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlv 787 (1666)
T KOG0985|consen 708 EGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLV 787 (1666)
T ss_pred hhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHH
Confidence 12335555556677777788877777766542 111 1111211
Q ss_pred hHH------HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-------------HHHHHHHHhcCChHHHHHHHHHHH
Q 006010 334 TYG------TIINGLVKLGRAVDGARVLMSMEERKFHVNEYIY-------------STLISGLFKEGKAEDAMKLWKQMM 394 (664)
Q Consensus 334 ~~~------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~a~~~~~~~~ 394 (664)
.|. ..|..|...-+....-.+...+.+-+ -+.... ..+..-.-+.++..--...++...
T Consensus 788 lYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~d--C~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i 865 (1666)
T KOG0985|consen 788 LYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVD--CSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLI 865 (1666)
T ss_pred HHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCC--CcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 110 11222221111000000000000000 000000 011111112233333333444444
Q ss_pred HcCCCCCHHHHHHHHHHHHh------------------------------------------------------------
Q 006010 395 EKGCKPNTVVYSALIDGLCR------------------------------------------------------------ 414 (664)
Q Consensus 395 ~~~~~~~~~~~~~li~~~~~------------------------------------------------------------ 414 (664)
..|.. |..+++++...|..
T Consensus 866 ~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aR 944 (1666)
T KOG0985|consen 866 QEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQAR 944 (1666)
T ss_pred hccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHH
Confidence 44433 44444444333322
Q ss_pred ----cCChhHHHH-----------HHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHH
Q 006010 415 ----VGKPDEAEE-----------ILFEMINNGC--AANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYN--EVCY 475 (664)
Q Consensus 415 ----~~~~~~a~~-----------~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 475 (664)
..+.+.=.+ +.++..+.++ ..|+...+..+.++...+-+.+-+++++++.-.....+ ...-
T Consensus 945 Ylv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQ 1024 (1666)
T KOG0985|consen 945 YLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQ 1024 (1666)
T ss_pred HHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhh
Confidence 222111111 1122222221 23556666777778888888888888887754322111 0011
Q ss_pred HH---------------------------HHHHHHcCCChHHHHHHHHHHHhCC---------------------CCcCH
Q 006010 476 SV---------------------------LIHGLCEDGKLREARMVWTQMLSRG---------------------CKPDV 507 (664)
Q Consensus 476 ~~---------------------------l~~~~~~~g~~~~A~~~~~~~~~~~---------------------~~p~~ 507 (664)
+. +.......+-+++|..+|++.-..+ ---.+
T Consensus 1025 nLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p 1104 (1666)
T KOG0985|consen 1025 NLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEP 1104 (1666)
T ss_pred hhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCCh
Confidence 11 2222334455667777766432110 01234
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010 508 VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLT 587 (664)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 587 (664)
..|..+..+-.+.|.+.+|++-|-++ + |+..|..+++...+.|+|++-++++..+++....|...+-.. -
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika-----d---Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi--~ 1174 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-----D---DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELI--F 1174 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc-----C---CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHH--H
Confidence 57888888988999999999888665 2 667899999999999999999999998888766776554332 2
Q ss_pred hhhhhc--cC-----CCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHH
Q 006010 588 ALKEKL--EA-----PQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCW 659 (664)
Q Consensus 588 ~~~~~~--~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 659 (664)
++++.. .. ......-+..+|+.|...|.++.|.-++... ..|..|...+...|.++.|.+.-+
T Consensus 1175 AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 222211 00 0011122457788888888888887666554 245566666666666666665433
No 82
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.8e-07 Score=87.57 Aligned_cols=441 Identities=16% Similarity=0.098 Sum_probs=247.6
Q ss_pred HHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcC
Q 006010 89 LIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEG 168 (664)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (664)
-.++....|+++.|...|...+...+. +...|..-..+|+..|++++|++--.+-.+. .|.-+..|+-.+.++.-.|
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence 456677788888888888888877754 6667778888888888888888876665443 2333567888888888888
Q ss_pred CHhHHHHHHHHHHhcccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCh-hHH
Q 006010 169 LYHRALEFYNHIVNAKHMNILP-NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRL-DEA 246 (664)
Q Consensus 169 ~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a 246 (664)
+|++|+.-|.+-++ ..| +...+.-+..++ ..+.+. +.. ..++..|..+..--....-. +.+
T Consensus 85 ~~~eA~~ay~~GL~-----~d~~n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~ 147 (539)
T KOG0548|consen 85 DYEEAILAYSEGLE-----KDPSNKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPA 147 (539)
T ss_pred cHHHHHHHHHHHhh-----cCCchHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHH
Confidence 88888888888776 233 344555555554 111111 111 11233333332211111110 111
Q ss_pred -HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH-----HHHcC-------CCCCHHHHHHHHHHHHhcCCh
Q 006010 247 -VLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDN-----MFLKG-------CLPNEVTYNTLIHGLCLKGNL 313 (664)
Q Consensus 247 -~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~g-------~~p~~~~~~~l~~~~~~~g~~ 313 (664)
..+++.+... |+. +..|.....+..+.-.+.. +...| ..|.. ......-..++.
T Consensus 148 ~~~~l~~~~~~---p~~------l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~d~ 214 (539)
T KOG0548|consen 148 YVKILEIIQKN---PTS------LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCK----QEHNGFPIIEDN 214 (539)
T ss_pred HHHHHHHhhcC---cHh------hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCccc----ccCCCCCccchh
Confidence 1222222221 111 1111111111111111110 00111 11110 000000000000
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006010 314 DKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQM 393 (664)
Q Consensus 314 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 393 (664)
.+-.+ . ..-..-...+.+...+..++..+.+.+....+.. -+..-++....+|...|.+..++....+.
T Consensus 215 ~ee~~-----~----k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a 283 (539)
T KOG0548|consen 215 TEERR-----V----KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKA 283 (539)
T ss_pred HHHHH-----H----HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHH
Confidence 00000 0 0011223455666667777788887777777664 25555666677788888877777777776
Q ss_pred HHcCCCCCHHHH-------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006010 394 MEKGCKPNTVVY-------SALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKN 466 (664)
Q Consensus 394 ~~~~~~~~~~~~-------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 466 (664)
.+.|-. ...-| ..+..+|.+.++++.+..+|.+.+.....|+. ..+....+++.+..+...-.
T Consensus 284 ~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~ 353 (539)
T KOG0548|consen 284 VEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI 353 (539)
T ss_pred HHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh
Confidence 665432 11122 22334566677888888888887665323221 22334445555555544433
Q ss_pred CCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHh
Q 006010 467 NCVYNE-VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVF 545 (664)
Q Consensus 467 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 545 (664)
+ |.. .-...-...+.+.|++..|+..|.+++... +-|...|.....+|.+.|.+..|++-.+..+++++. ...
T Consensus 354 ~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~---~~k 427 (539)
T KOG0548|consen 354 N--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN---FIK 427 (539)
T ss_pred C--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch---HHH
Confidence 3 222 122233667888999999999999999874 446788999999999999999999998888654332 334
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhh
Q 006010 546 TYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKE 591 (664)
Q Consensus 546 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 591 (664)
.|..-..++....+|++|.+.|++.++ ..|+..-+..-+.-|..
T Consensus 428 gy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 428 AYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHH
Confidence 455555566667789999999999988 56777766666666543
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.23 E-value=5.5e-09 Score=88.86 Aligned_cols=192 Identities=17% Similarity=0.090 Sum_probs=161.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHH
Q 006010 439 TYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLC 518 (664)
Q Consensus 439 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 518 (664)
+...|.-.|...|+...|..-+++.++.+ |.+..+|..+...|.+.|..+.|.+-|++.+... +-+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45567788999999999999999999987 5567789999999999999999999999999863 234578999999999
Q ss_pred HcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHhhhhhccCCC
Q 006010 519 NAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL-VTCNIFLTALKEKLEAPQ 597 (664)
Q Consensus 519 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~ 597 (664)
..|++++|...|++++ .+|...-...+|..+.-+..+.|+.+.|...|++.++ ..|+. .+...+...
T Consensus 115 ~qg~~~eA~q~F~~Al-~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~--------- 182 (250)
T COG3063 115 AQGRPEEAMQQFERAL-ADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARL--------- 182 (250)
T ss_pred hCCChHHHHHHHHHHH-hCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHH---------
Confidence 9999999999999996 4554444566888999999999999999999999998 45543 344444444
Q ss_pred CchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHH
Q 006010 598 DGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINK 657 (664)
Q Consensus 598 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 657 (664)
..+.|++-.|..+++.....+. ++.......++.-.+.|+.+.|-++
T Consensus 183 ------------~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 183 ------------HYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred ------------HHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 8999999999999999988754 8888888888888899998888764
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=3.6e-08 Score=86.90 Aligned_cols=314 Identities=12% Similarity=0.076 Sum_probs=159.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHH-HH
Q 006010 121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNL-VI 199 (664)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-ll 199 (664)
+..++..+.+..++++|++++....+. .+.+....+.+..+|....++..|.++|+++.. ..|...-|.. -.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q-----l~P~~~qYrlY~A 85 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ-----LHPELEQYRLYQA 85 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hChHHHHHHHHHH
Confidence 344444455666677777776665443 233555666666777777777777777777644 3455444432 23
Q ss_pred HHHHhcCChhHHHHHHhhcccCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006010 200 KTVCRLGLVDNAIQLFREMPVRNCEPDIYT--YCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGE 277 (664)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 277 (664)
..+.+.+.+..|+.+...|... +.... ...-.......+++..+..++++....| +..+.+...-...+.|+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc
Confidence 3445566677777776666532 11111 1111122234566666777766665432 33344444444556677
Q ss_pred hhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH----HHHHHHHhcCChhHHH
Q 006010 278 LGRAAKLVDNMFLK-GCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYG----TIINGLVKLGRAVDGA 352 (664)
Q Consensus 278 ~~~a~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~ 352 (664)
++.|.+-|+...+- |.. ....|+..+.. .+.|+++.|+++..+++++|++..+..-- ..++ .+.+..-.
T Consensus 160 yEaAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD----vrsvgNt~ 233 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID----VRSVGNTL 233 (459)
T ss_pred HHHHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc----hhcccchH
Confidence 77777777776554 333 34456554443 34567777777777777766543221100 0000 00000000
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006010 353 RVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEK-GCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINN 431 (664)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 431 (664)
.+.... -...+|.-...+.+.|+++.|.+.+-+|.-. ....|++|...+.-. -..+++.+..+-+.-++..
T Consensus 234 ~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 234 VLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred HHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhc
Confidence 000000 0113333344455666777776666666432 123355555443322 1233444444444444444
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006010 432 GCAANAFTYSSLMKGFFESGKGHKAVEIWKD 462 (664)
Q Consensus 432 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 462 (664)
+ |-...||..++-.|++..-++-|-.++.+
T Consensus 306 n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 306 N-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred C-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 3 34456666666677776666666665543
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=3e-09 Score=105.25 Aligned_cols=243 Identities=15% Similarity=0.057 Sum_probs=121.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc----CC-CCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhccc---CC
Q 006010 117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE----FH-CKRTVK-SFNSVLNVIIQEGLYHRALEFYNHIVNAKH---MN 187 (664)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~ 187 (664)
...+...+...|...|+++.|..++...++. .| ..|.+. ..+.+...|...+++.+|..+|+.++.... ..
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3334444555555555555555555554432 11 012222 233355555555666555555555543210 01
Q ss_pred CCcC-HHHHHHHHHHHHhcCChhHHHHHHhhcccC-----C-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 006010 188 ILPN-TLTFNLVIKTVCRLGLVDNAIQLFREMPVR-----N-CEPDIY-TYCTLMDGLCKENRLDEAVLLLDEMQVD--- 256 (664)
Q Consensus 188 ~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 256 (664)
..|. ..+++.|..+|.+.|++++|...++...+. | ..|.+. .++.+...++..+++++|..++....+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1222 235555555666666655555555443210 1 012222 2455555666666666666666544321
Q ss_pred CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010 257 GCFP----TPVTFNVLINGLCKNGELGRAAKLVDNMFLK----GC--LPN-EVTYNTLIHGLCLKGNLDKAVSLLDRMVA 325 (664)
Q Consensus 257 ~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (664)
-..+ -..+++.|...|.+.|++++|.+++++++.. +- .+. ...++.+...|.+.+++.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 0111 1345666666666667776666666665433 11 111 23455566666666666666666655433
Q ss_pred C----C--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010 326 S----K--CMPNEVTYGTIINGLVKLGRAVDGARVLMSME 359 (664)
Q Consensus 326 ~----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 359 (664)
. | .+-...+|..|...|...|+++.|.++.+.+.
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 2 11223456666677777777777776666554
No 86
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.20 E-value=9.2e-07 Score=87.74 Aligned_cols=313 Identities=17% Similarity=0.122 Sum_probs=151.3
Q ss_pred HHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006010 197 LVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNG 276 (664)
Q Consensus 197 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 276 (664)
..|.+|....++++|+.+-+.. |.+.-...-.+.++++...|+-++|-++-+ ..| | + .+.|..|.+.|
T Consensus 562 ~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~elk~---sdg---d--~-laaiqlyika~ 629 (1636)
T KOG3616|consen 562 EAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAELKE---SDG---D--G-LAAIQLYIKAG 629 (1636)
T ss_pred HHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhhcc---ccC---c--c-HHHHHHHHHcC
Confidence 3456666777777777665432 222222334455566666666666554321 111 1 1 23466777777
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 006010 277 ELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLM 356 (664)
Q Consensus 277 ~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 356 (664)
.+..|.+....-. .+..|......+..++.+..-+++|-++|+++.. +...+.+|-+..-+.+|.++-.
T Consensus 630 ~p~~a~~~a~n~~--~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielar 698 (1636)
T KOG3616|consen 630 KPAKAARAALNDE--ELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELAR 698 (1636)
T ss_pred CchHHHHhhcCHH--HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHH
Confidence 7776665443211 1223555555555555555556666666666542 1122333333333444444322
Q ss_pred HHHHcCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 006010 357 SMEERKFHVNEYI-YSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAA 435 (664)
Q Consensus 357 ~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 435 (664)
-.- +...+. -.....-+...|+++.|+..|-+... ....+.+......|.+|+.+++.+.... .
T Consensus 699 faf----p~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~ 763 (1636)
T KOG3616|consen 699 FAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--T 763 (1636)
T ss_pred hhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--c
Confidence 211 101111 11122233345555555554433221 1123344445556666666666555442 2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHH
Q 006010 436 NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIH 515 (664)
Q Consensus 436 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 515 (664)
...-|..+.+-|...|+++.|.++|.+.- .++-.|..|.+.|+|++|.++-.+.. |.......|..-..
T Consensus 764 ~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakae 832 (1636)
T KOG3616|consen 764 ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAE 832 (1636)
T ss_pred ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHH
Confidence 22334555566666666666666654322 23345556666666666666554443 22222334444444
Q ss_pred HHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 006010 516 GLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNS 569 (664)
Q Consensus 516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 569 (664)
-+-..|++.+|+++|-.+ ..|+. .+..|-+.|..++.+++..+
T Consensus 833 dldehgkf~eaeqlyiti------~~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 833 DLDEHGKFAEAEQLYITI------GEPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred hHHhhcchhhhhheeEEc------cCchH-----HHHHHHhhCcchHHHHHHHH
Confidence 455666666666666444 22332 24455566666666555554
No 87
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.20 E-value=7e-09 Score=102.75 Aligned_cols=198 Identities=18% Similarity=0.098 Sum_probs=132.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC-----C-CCcCH-
Q 006010 442 SLMKGFFESGKGHKAVEIWKDMAKN-----N--CVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSR-----G-CKPDV- 507 (664)
Q Consensus 442 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~- 507 (664)
.+...|...+++++|..+|+++... | .+.-..+++.|...|.+.|++++|...++.+.+- | ..|..
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 3555666677777777777666541 1 1111235666666777888877777666655431 2 12333
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC-CCCCC----HhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CC--C
Q 006010 508 VAYSSMIHGLCNAGSVEEALKLFNEMLCLEP-KSQPD----VFTYNILLNALCKQSNISHSIDLLNSMMDR----GC--D 576 (664)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~ 576 (664)
..++.++..|...+++++|..++.+.+++-. ...++ ..+++.|...|.+.|++++|.+++++++.. +- .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 3456777888999999999999988765432 11112 347889999999999999999999999852 11 1
Q ss_pred CC-HHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc----C-CCCC-hHHHHHHHHHhcccc
Q 006010 577 PD-LVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK----F-LSPQ-TSTWERVVQELCRPK 649 (664)
Q Consensus 577 p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~-~~~~~~l~~~~~~~g 649 (664)
+. ...++.+... |.+.+.+.+|.++|.+...- | ..|+ ..+|..|+..|.+.|
T Consensus 406 ~~~~~~l~~la~~---------------------~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g 464 (508)
T KOG1840|consen 406 YGVGKPLNQLAEA---------------------YEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG 464 (508)
T ss_pred hhhhHHHHHHHHH---------------------HHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc
Confidence 11 2233444444 88888889898888875432 2 2233 478999999999999
Q ss_pred hHHHHHHHHHh
Q 006010 650 RIQAAINKCWS 660 (664)
Q Consensus 650 ~~~~A~~~~~~ 660 (664)
++++|+++...
T Consensus 465 ~~e~a~~~~~~ 475 (508)
T KOG1840|consen 465 NYEAAEELEEK 475 (508)
T ss_pred cHHHHHHHHHH
Confidence 99999987544
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.19 E-value=1.8e-07 Score=92.91 Aligned_cols=200 Identities=11% Similarity=0.009 Sum_probs=121.5
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 006010 83 DSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVV--LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSV 160 (664)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 160 (664)
+..|..+...+...|+.+.+...+....+..... ...........+...|++++|.+.+++.++. .|.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-
Confidence 4456666666777777777776666665543211 2223334445566778888888888887665 3344444442
Q ss_pred HHHHHHc----CCHhHHHHHHHHHHhcccCCCCcCH-HHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHH
Q 006010 161 LNVIIQE----GLYHRALEFYNHIVNAKHMNILPNT-LTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMD 235 (664)
Q Consensus 161 ~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 235 (664)
...+... +....+.+.++.. ....|+. .....+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~ 156 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLW-----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAH 156 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhcc-----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 2233333 3333444433331 1222332 344455566777888888888888887765 455667777788
Q ss_pred HHHhcCChhHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010 236 GLCKENRLDEAVLLLDEMQVDGC-FPTP--VTFNVLINGLCKNGELGRAAKLVDNMFLK 291 (664)
Q Consensus 236 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (664)
++...|++++|...+++...... .++. ..|..+...+...|++++|..++++....
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88888888888888887665421 1222 23446677777888888888888876533
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4.1e-07 Score=87.39 Aligned_cols=422 Identities=14% Similarity=0.091 Sum_probs=254.2
Q ss_pred ccCCChhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 006010 58 NAKSEQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEA 137 (664)
Q Consensus 58 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 137 (664)
....+.+.|+..|..+.... ++|...|..-..+|+..|+++.|.+--...++..+. ....|.....++.-.|++++|
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred cccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccHHHH
Confidence 34567889999998776654 357888888999999999999999888888877744 666899999999999999999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcC-ChhHHHHHHh
Q 006010 138 IRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLG-LVDNAIQLFR 216 (664)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~ 216 (664)
+.-|.+-++. .+.+...++.+..++. .+.+. .... -+...|..+..-=...+ ..+.+....-
T Consensus 90 ~~ay~~GL~~--d~~n~~L~~gl~~a~~----~~~~~---~~~~--------~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 90 ILAYSEGLEK--DPSNKQLKTGLAQAYL----EDYAA---DQLF--------TKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHhhc--CCchHHHHHhHHHhhh----HHHHh---hhhc--------cCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 9999998775 4455666777777661 11111 1111 12222222211100000 0111221111
Q ss_pred hcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----hCC-------CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006010 217 EMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQ-----VDG-------CFPTPVTFNVLINGLCKNGELGRAAKL 284 (664)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~ 284 (664)
+....+ +-+. ..|..-.++..+...+.... ..| ..|. .+..+ ....
T Consensus 153 ~~~~~~-p~~l-------~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-----------~~~~~---~~~~ 210 (539)
T KOG0548|consen 153 EIIQKN-PTSL-------KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-----------KQEHN---GFPI 210 (539)
T ss_pred HHhhcC-cHhh-------hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-----------cccCC---CCCc
Confidence 112221 1111 11221111112221111110 001 1111 00000 0000
Q ss_pred HHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006010 285 VDNMFLK-GCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKF 363 (664)
Q Consensus 285 ~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 363 (664)
..++.+. ...--..-...+.++..+..+++.|.+-+...++.. .+..-++....+|...|.+.+.....+...+.|.
T Consensus 211 ~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr 288 (539)
T KOG0548|consen 211 IEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR 288 (539)
T ss_pred cchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH
Confidence 0000000 000012234567777788888999999999888764 4555667777788888888888777777666554
Q ss_pred CCCHHHHHH-------HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 006010 364 HVNEYIYST-------LISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAAN 436 (664)
Q Consensus 364 ~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 436 (664)
. ....|+. +..+|.+.++++.++..|.+.......|+. ..+....+++....+...-.+...
T Consensus 289 e-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~- 357 (539)
T KOG0548|consen 289 E-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK- 357 (539)
T ss_pred H-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-
Confidence 3 2222332 334666778899999999987765444332 222334444544444433332111
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHHHHHH
Q 006010 437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD-VVAYSSMIH 515 (664)
Q Consensus 437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 515 (664)
..-...-...+.+.|++..|+..|.++++.. |.|...|.....+|.+.|.+..|+.-.+..++. .|+ ...|..=+.
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGA 434 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHH
Confidence 2222233667889999999999999999987 778889999999999999999999998888875 444 455666666
Q ss_pred HHHHcCCHHHHHHHHHHhhhcC
Q 006010 516 GLCNAGSVEEALKLFNEMLCLE 537 (664)
Q Consensus 516 ~~~~~g~~~~A~~~~~~~~~~~ 537 (664)
++....+++.|.+.|++.+..+
T Consensus 435 al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 7777789999999999996543
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.8e-07 Score=82.55 Aligned_cols=291 Identities=12% Similarity=0.092 Sum_probs=190.6
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHH-HHHHHH
Q 006010 85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSF-NSVLNV 163 (664)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~~ 163 (664)
-+.+++..+.+..++..|++++....+.++ .+...+..+..+|....++..|-..|+++.. ..|...-| ..-.+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHH
Confidence 367778888999999999999988887664 3667788999999999999999999999854 33443333 334677
Q ss_pred HHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHH--HHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcC
Q 006010 164 IIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIK--TVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKEN 241 (664)
Q Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 241 (664)
+.+.+.+..|+.+...|.. . |+...-..-+. .....+++..+..+.++....| +..+.+.......+.|
T Consensus 88 LY~A~i~ADALrV~~~~~D---~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLD---N---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG 158 (459)
T ss_pred HHHhcccHHHHHHHHHhcC---C---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc
Confidence 8889999999999988854 1 22222112222 2335689999999999988654 4556666667778999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-------------CH-----------
Q 006010 242 RLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLP-------------NE----------- 297 (664)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p-------------~~----------- 297 (664)
+++.|.+-|+...+-+.-.....|+..+ +..+.|+++.|++...+++++|++. |+
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 9999999999988866555667787655 4556799999999999999887652 11
Q ss_pred ----HHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006010 298 ----VTYNTLIHGLCLKGNLDKAVSLLDRMVAS-KCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYST 372 (664)
Q Consensus 298 ----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 372 (664)
..+|.-...+.+.|+++.|.+.+-.|.-+ .-..|++|...+.-. -..+++.+..+-+.-+.+.++- ...+|..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHH
Confidence 11222233344556666666655555322 123344444333211 1123444444444444444332 3445555
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 006010 373 LISGLFKEGKAEDAMKLWK 391 (664)
Q Consensus 373 l~~~~~~~~~~~~a~~~~~ 391 (664)
++-.||++.-++.|-.++-
T Consensus 316 lLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHHhhhHHHhHHHHHHh
Confidence 5566666665555555543
No 91
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=8.2e-11 Score=77.55 Aligned_cols=47 Identities=47% Similarity=0.776 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006010 261 TPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGL 307 (664)
Q Consensus 261 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 307 (664)
|..+||.+|++|++.|++++|.++|++|.+.|+.||..||+.+++++
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444443
No 92
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=1.6e-08 Score=96.23 Aligned_cols=218 Identities=11% Similarity=0.008 Sum_probs=141.8
Q ss_pred ChhHHHHHHhhCCCCCCCCCC--hhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006010 62 EQPFSDEIFNSTPKLGSYQLG--DSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIR 139 (664)
Q Consensus 62 ~~~~a~~~f~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (664)
..+.++.-+..+....+..|+ ...|..+...+...|+++.|...|+++.+.++ .+..+|+.+...+...|++++|+.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345566666555543332222 45677788888888999999998988888764 367788888888889999999999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcc
Q 006010 140 LFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMP 219 (664)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 219 (664)
.|++.++. .+.+..+|..++..+...|++++|.+.|+...+ ..|+..............++.++|.+.|.+..
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~-----~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ-----DDPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 88888764 344567788888888888999999999988877 33443322222223345677888888886654
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC---CC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006010 220 VRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVD---GC---FPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKG 292 (664)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 292 (664)
... .++...+ .+ .....|+...+ +.++.+.+. .+ +.....|..+...+.+.|++++|...|++....+
T Consensus 193 ~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 332 2332221 22 22334555443 344444321 11 1123467777788888888888888888877654
No 93
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=8.7e-11 Score=77.42 Aligned_cols=49 Identities=49% Similarity=0.941 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006010 225 PDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLC 273 (664)
Q Consensus 225 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 273 (664)
||..+|++++++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666654
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.13 E-value=1.2e-06 Score=79.21 Aligned_cols=316 Identities=13% Similarity=0.096 Sum_probs=165.5
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCH-HHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHH-
Q 006010 152 RTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNT-LTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYT- 229 (664)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~- 229 (664)
.++.-..-+...+...|++..|+.-|..+++ ..|+. .++-.-...|...|+...|+.-+...++. +||-..
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve-----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~A 108 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVE-----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAA 108 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc-----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHH
Confidence 3455556667777777788888888877766 22332 23334455666777777777777777665 566432
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010 230 YCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL 309 (664)
Q Consensus 230 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 309 (664)
-..-...+.+.|.+++|..-|+.+.+.. |+..+ ...++.+.-..++-.. ....+..+..
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~ 167 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWV----------------LVQQLKSASG 167 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHH----------------HHHHHHHHhc
Confidence 2233456677788888888887777653 32211 1111111111111111 1122233345
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010 310 KGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKL 389 (664)
Q Consensus 310 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 389 (664)
.|+...|+.....+++.. +-|...+..-..+|...|++..|+.-+....+..-. +...+..+-..+...|+.+.++..
T Consensus 168 ~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred CCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHH
Confidence 666677777777666652 446666666666777777777666665555544322 444555556666667777777766
Q ss_pred HHHHHHcCCCCCHHHH----HHH---------HHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCh
Q 006010 390 WKQMMEKGCKPNTVVY----SAL---------IDGLCRVGKPDEAEEILFEMINNGCAAN---AFTYSSLMKGFFESGKG 453 (664)
Q Consensus 390 ~~~~~~~~~~~~~~~~----~~l---------i~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 453 (664)
.++.++. .||.... ..+ +......++|.++.+..+..++...... ...+..+-.++...+++
T Consensus 246 iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 246 IRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 6666654 2332211 000 1112334445555555555544421101 11222333344444555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 006010 454 HKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLS 500 (664)
Q Consensus 454 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (664)
-+|++...++.... +.|..++.--..+|.-...++.|+.-|+...+
T Consensus 324 ~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 324 GEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 55555555555433 22344454455555555555555555555554
No 95
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.12 E-value=4e-07 Score=90.20 Aligned_cols=308 Identities=13% Similarity=0.098 Sum_probs=174.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 006010 268 LINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGR 347 (664)
Q Consensus 268 li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 347 (664)
.+.+......|.+|+.+++.+..... -..-|..+...|+..|+++.|.++|-+.- .++..|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 34555667788888888888776532 23456777788888999999988886542 35566788889999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006010 348 AVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFE 427 (664)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 427 (664)
+++|.++-.+.. |+......|-+-..-+-+.|++.+|.++|-.+. .|+. .|.+|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 998888776654 334455556665666677888888877765443 2332 46677777877777777665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH---------
Q 006010 428 MINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQM--------- 498 (664)
Q Consensus 428 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------- 498 (664)
-.-.. -..+...+..-|...|+...|...|-+..+ |...++.|-..+-|++|.++-+.-
T Consensus 876 ~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v 943 (1636)
T KOG3616|consen 876 HHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHV 943 (1636)
T ss_pred hChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHH
Confidence 43221 123444555566667777777766644332 334444555555555554443210
Q ss_pred -----HhCCCCcCHH------hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 006010 499 -----LSRGCKPDVV------AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLL 567 (664)
Q Consensus 499 -----~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 567 (664)
...|-..-+. ....-+..-+..+.++-|..+-+-..+ . ..|. ..-.+...+...|++++|-+.+
T Consensus 944 ~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~-k~~~--vhlk~a~~ledegk~edaskhy 1018 (1636)
T KOG3616|consen 944 AFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--D-KMGE--VHLKLAMFLEDEGKFEDASKHY 1018 (1636)
T ss_pred HHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--c-cCcc--chhHHhhhhhhccchhhhhHhh
Confidence 0001000000 111122233444556666665554421 1 1111 1223444566789999998888
Q ss_pred HHHHHCCCCCCHHHHHHHHH-----hhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHH
Q 006010 568 NSMMDRGCDPDLVTCNIFLT-----ALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIV 623 (664)
Q Consensus 568 ~~~~~~~~~p~~~~~~~ll~-----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 623 (664)
-+.++. ..-..||...+- ..-+.++.|..+.++ +.+.++|..|.++-
T Consensus 1019 veaikl--ntynitwcqavpsrfd~e~ir~gnkpe~av~m-------fi~dndwa~aerva 1070 (1636)
T KOG3616|consen 1019 VEAIKL--NTYNITWCQAVPSRFDAEFIRAGNKPEEAVEM-------FIHDNDWAAAERVA 1070 (1636)
T ss_pred HHHhhc--ccccchhhhcccchhhHHHHHcCCChHHHHHH-------hhhcccHHHHHHHH
Confidence 877763 222333322211 111234556666665 45556665555543
No 96
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.12 E-value=1.2e-07 Score=90.30 Aligned_cols=119 Identities=13% Similarity=0.009 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHhhhcCCCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChh
Q 006010 132 HLVEEAIRLFHTMVDEFHCKRT--VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVD 209 (664)
Q Consensus 132 g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 209 (664)
+..+.++.-+.+++......|+ ...|..++..+...|++++|...|++.++.. +.+...|+.+...+...|+++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~----P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR----PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHCCCHH
Confidence 4444455544444432211111 2334444444555555555555555544411 112334444444445555555
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006010 210 NAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQV 255 (664)
Q Consensus 210 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 255 (664)
+|.+.|+...+.. +.+..+|..+..++...|++++|.+.|+...+
T Consensus 116 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 116 AAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555554444432 22334444444444444555555544444444
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.10 E-value=1.3e-06 Score=86.89 Aligned_cols=204 Identities=11% Similarity=0.004 Sum_probs=133.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHH
Q 006010 117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTV-KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTF 195 (664)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 195 (664)
....+..+...+...|+.+++.+.+...........+. .........+...|++++|...++++.+.. +.+...+
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----P~~~~a~ 80 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY----PRDLLAL 80 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHH
Confidence 34466677777777888888877777765543333332 233334556677899999999999988721 2233333
Q ss_pred HH---HHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006010 196 NL---VIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGL 272 (664)
Q Consensus 196 ~~---ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 272 (664)
.. ........|..+.+.+.+...... .+........+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 81 KLHLGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred HHhHHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 32 111112245556666666552222 12334455566678888999999999999988764 34566778888888
Q ss_pred HhcCChhHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006010 273 CKNGELGRAAKLVDNMFLKGC-LPNE--VTYNTLIHGLCLKGNLDKAVSLLDRMVAS 326 (664)
Q Consensus 273 ~~~g~~~~a~~~~~~~~~~g~-~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 326 (664)
...|++++|...+++...... .|+. ..|..+...+...|++++|..++++....
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 899999999999988776532 1222 24556777888899999999999887543
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=6.1e-06 Score=83.21 Aligned_cols=140 Identities=13% Similarity=0.097 Sum_probs=71.1
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhccc------CCCCcCHHHHHHHHHH
Q 006010 128 YGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKH------MNILPNTLTFNLVIKT 201 (664)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~ll~~ 201 (664)
|...|+.+.|.+-.+.+.. -..|..+..+|++.++.+-|.-++-.|....+ ....|+ ..-..+...
T Consensus 738 yvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 4456666666666655521 23566666666666666655555444432110 001121 122222333
Q ss_pred HHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006010 202 VCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRA 281 (664)
Q Consensus 202 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 281 (664)
..+.|.+++|..+|++-.+. ..|=..|-..|.+++|.++-+.--.. . =..||......+-..+|.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHH
Confidence 44566677777776665432 22334455566666666665432221 1 223555555555556666666
Q ss_pred HHHHHH
Q 006010 282 AKLVDN 287 (664)
Q Consensus 282 ~~~~~~ 287 (664)
++.|++
T Consensus 878 leyyEK 883 (1416)
T KOG3617|consen 878 LEYYEK 883 (1416)
T ss_pred HHHHHh
Confidence 666654
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.09 E-value=5.4e-06 Score=75.05 Aligned_cols=253 Identities=14% Similarity=0.107 Sum_probs=120.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006010 343 VKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAE 422 (664)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 422 (664)
...|+...++.....+.+..+ .|...+..-..+|...|++..|+.=++...+... .+..++--+-..+...|+.+.++
T Consensus 166 ~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred hcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHH
Confidence 334555555555555554432 2445555555555555555555554444443321 13333334444445555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 006010 423 EILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG 502 (664)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (664)
...++.++. .||....... | ....+..+.++. +......++|.++++-.+...+..
T Consensus 244 ~~iRECLKl--dpdHK~Cf~~---Y---KklkKv~K~les----------------~e~~ie~~~~t~cle~ge~vlk~e 299 (504)
T KOG0624|consen 244 KEIRECLKL--DPDHKLCFPF---Y---KKLKKVVKSLES----------------AEQAIEEKHWTECLEAGEKVLKNE 299 (504)
T ss_pred HHHHHHHcc--CcchhhHHHH---H---HHHHHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcC
Confidence 555555543 2222111000 0 001111111111 112344566666666666666543
Q ss_pred CCcCHH---hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006010 503 CKPDVV---AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL 579 (664)
Q Consensus 503 ~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 579 (664)
...... .+..+-.++...|++.+|++...+++..++. |..++-.-..+|.-...+++|+.-|+++.+ +.++.
T Consensus 300 p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~---dv~~l~dRAeA~l~dE~YD~AI~dye~A~e--~n~sn 374 (504)
T KOG0624|consen 300 PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD---DVQVLCDRAEAYLGDEMYDDAIHDYEKALE--LNESN 374 (504)
T ss_pred CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCccc
Confidence 221122 2233444555667777777777777543222 456666666777777777777777777776 44544
Q ss_pred HHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 580 VTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 580 ~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
.....-+....+. .....-+.|+..|+ --+.-.-.+..+.+++|-.+
T Consensus 375 ~~~reGle~Akrl-kkqs~kRDYYKILG--VkRnAsKqEI~KAYRKlAqk 421 (504)
T KOG0624|consen 375 TRAREGLERAKRL-KKQSGKRDYYKILG--VKRNASKQEITKAYRKLAQK 421 (504)
T ss_pred HHHHHHHHHHHHH-HHHhccchHHHHhh--hcccccHHHHHHHHHHHHHh
Confidence 4333333221111 11122234444444 22333445666777777665
No 100
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.07 E-value=1.8e-05 Score=76.33 Aligned_cols=178 Identities=15% Similarity=0.142 Sum_probs=125.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 006010 382 KAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAA-NAFTYSSLMKGFFESGKGHKAVEIW 460 (664)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 460 (664)
..+.....++++...-...-.-+|..+|+...+..-++.|..+|.++.+.+..+ ++.+.++++..|+ .++..-|.++|
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 356666777776654322234567778888888888999999999999887555 7778888888765 57888999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCH--HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC
Q 006010 461 KDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDV--VAYSSMIHGLCNAGSVEEALKLFNEMLCLEP 538 (664)
Q Consensus 461 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (664)
+.-.+.- ..+..--...+..+...++-..|..+|++.+..++.|+. ..|..++.--..-|+...+.++-+++...-+
T Consensus 425 eLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 425 ELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 8866654 244444556777888889999999999999988666663 6899999988999999999888877643222
Q ss_pred -CCCCCHhHHHHHHHHHHHcCChh
Q 006010 539 -KSQPDVFTYNILLNALCKQSNIS 561 (664)
Q Consensus 539 -~~~~~~~~~~~l~~~~~~~g~~~ 561 (664)
...+....-..+++.|.-.+.+.
T Consensus 504 ~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhhcCCCChHHHHHHHHhhccccc
Confidence 12222223334555555555443
No 101
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=7.9e-06 Score=82.46 Aligned_cols=212 Identities=15% Similarity=0.180 Sum_probs=113.5
Q ss_pred ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCC--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC
Q 006010 82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREK--------RVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT 153 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 153 (664)
+...|..+...|.+.++++-|.-.+..|.... ...+.+.=..++......|+.++|..+|++-.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ck-------- 827 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCK-------- 827 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHH--------
Confidence 45678888888888888887776665554321 00011122233333457788888888887652
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCC---------C
Q 006010 154 VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNC---------E 224 (664)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---------~ 224 (664)
-|..+-..|...|.+++|.++-+.--+ +. =..||......+...++.+.|++.|++.-...+ +
T Consensus 828 --R~DLlNKlyQs~g~w~eA~eiAE~~DR-----iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p 899 (1416)
T KOG3617|consen 828 --RYDLLNKLYQSQGMWSEAFEIAETKDR-----IH-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP 899 (1416)
T ss_pred --HHHHHHHHHHhcccHHHHHHHHhhccc-----ee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence 234455566677888888887765322 11 122555555666667777777777765421100 1
Q ss_pred ----------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 006010 225 ----------PDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCL 294 (664)
Q Consensus 225 ----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~ 294 (664)
.|...|.-....+-..|+.+.|+.+|..... |-.+++..|-.|+.++|-++-++-
T Consensus 900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------ 964 (1416)
T KOG3617|consen 900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------ 964 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------
Confidence 1222233333333344555555555544432 334444445555555555554432
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006010 295 PNEVTYNTLIHGLCLKGNLDKAVSLLDRMV 324 (664)
Q Consensus 295 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 324 (664)
-|......+.+.|-..|++.+|...|.+..
T Consensus 965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 965 GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 134444455556666666666666655543
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.01 E-value=3.3e-05 Score=74.60 Aligned_cols=181 Identities=15% Similarity=0.204 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC---ChHHHHHHHHHHHhCC-CCcCHHhHHHHHHHHHHcCCHHHHHH
Q 006010 453 GHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDG---KLREARMVWTQMLSRG-CKPDVVAYSSMIHGLCNAGSVEEALK 528 (664)
Q Consensus 453 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~ 528 (664)
.+++..++++....-...+..+|..+...--..- ..+.....+++++..- ..|+ .+|..+++.-.+..-++.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 3455666666555332334444444433221111 2555566666665432 2333 467777777777778888888
Q ss_pred HHHHhhhcCCCCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHhhhhhccCCCCchhhhHHH
Q 006010 529 LFNEMLCLEPKSQP-DVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT-CNIFLTALKEKLEAPQDGTDFLNEL 606 (664)
Q Consensus 529 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~l 606 (664)
+|.++ .+.+..+ ++...++++.-|| .++.+-|.++|+--++. -+|... ....+.-
T Consensus 388 iF~ka--R~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~Yldf------------------ 444 (656)
T KOG1914|consen 388 IFKKA--REDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDF------------------ 444 (656)
T ss_pred HHHHH--hhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHH------------------
Confidence 88888 4444444 5666777776665 46778888888776652 333332 2333333
Q ss_pred HHHhhhcCCcchHHHHHHHHHHcCCCCCh--HHHHHHHHHhcccchHHHHHHHHHh
Q 006010 607 AIRLFKRQRTSGGFKIVEVMLQKFLSPQT--STWERVVQELCRPKRIQAAINKCWS 660 (664)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 660 (664)
+...++-..|..+|++....+++++. .+|..+++--..-|++.-++++-++
T Consensus 445 ---L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 445 ---LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred ---HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 66777778888888888877555543 7888888888888888888776544
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.97 E-value=6.6e-06 Score=92.93 Aligned_cols=339 Identities=12% Similarity=-0.004 Sum_probs=211.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC------CCC--HHHHHHHHHH
Q 006010 235 DGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGC------LPN--EVTYNTLIHG 306 (664)
Q Consensus 235 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~------~p~--~~~~~~l~~~ 306 (664)
......|+++.+...++.+.......++.........+...|+++++..++......-. .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777766553211112222333445556678999999999987754311 111 1122233445
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHHHHHHHHHH
Q 006010 307 LCLKGNLDKAVSLLDRMVASKCMPNE----VTYGTIINGLVKLGRAVDGARVLMSMEER----KFH-VNEYIYSTLISGL 377 (664)
Q Consensus 307 ~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~ 377 (664)
+...|++++|...+++....-...+. .....+...+...|++++|...+.+.... +.. ........+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 66799999999999988763111121 23445566677899999999998887643 111 1123445566778
Q ss_pred HhcCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCC--CHHHHHHHHHH
Q 006010 378 FKEGKAEDAMKLWKQMMEK----GCK--P-NTVVYSALIDGLCRVGKPDEAEEILFEMINNG--CAA--NAFTYSSLMKG 446 (664)
Q Consensus 378 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~ 446 (664)
...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998886652 211 1 12334455566777899999999998876531 111 23344456667
Q ss_pred HHhcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHcCCChHHHHHHHHHHHhCCCCcCH---HhHHHHHHHH
Q 006010 447 FFESGKGHKAVEIWKDMAKNN--CVYNEV--CY--SVLIHGLCEDGKLREARMVWTQMLSRGCKPDV---VAYSSMIHGL 517 (664)
Q Consensus 447 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~ 517 (664)
+...|+.+.|.+.++...... ...... .. ...+..+...|+.+.|...+............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 888999999999988875421 111111 00 11224445688999999998776542211111 1234667778
Q ss_pred HHcCCHHHHHHHHHHhhhcCC--CCCCC-HhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006010 518 CNAGSVEEALKLFNEMLCLEP--KSQPD-VFTYNILLNALCKQSNISHSIDLLNSMMDR 573 (664)
Q Consensus 518 ~~~g~~~~A~~~~~~~~~~~~--~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 573 (664)
...|++++|..++++++.... +..++ ..++..+..++.+.|+.++|...+.++.+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 899999999999998864321 22221 234556667888999999999999999874
No 104
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=5.5e-08 Score=91.03 Aligned_cols=252 Identities=13% Similarity=0.106 Sum_probs=126.3
Q ss_pred HHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCC
Q 006010 90 IQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGL 169 (664)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (664)
++-+.-.|++..+..-.+ ....+..........+.+++...|+++.++.-... . .+|.......+...+...++
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~--~~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---S--SSPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---T--SSCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---C--CChhHHHHHHHHHHHhCccc
Confidence 344555677776665555 33333333444555666777777776655443221 1 24444444444443333234
Q ss_pred HhHHHHHHHHHHhcccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006010 170 YHRALEFYNHIVNAKHMNILP-NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVL 248 (664)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 248 (664)
-+.++.-++.... ....+ +..........+...|++++|++++... .+.+.....+.+|.+.++++.|.+
T Consensus 82 ~e~~l~~l~~~~~---~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k 152 (290)
T PF04733_consen 82 KESALEELKELLA---DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEK 152 (290)
T ss_dssp HHCHHHHHHHCCC---TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHH
T ss_pred hHHHHHHHHHHHH---hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444332 11111 2222222223444557777776666543 245566666677777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006010 249 LLDEMQVDGCFPTPVTFNVLINGLCK----NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMV 324 (664)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 324 (664)
.++.|.+.+ .| .+...++.++.. .+.+.+|..+|+++... ..+++.+.+.+..++...|++++|.+++.+..
T Consensus 153 ~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 153 ELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 777776542 22 333333333322 23566777777776443 34566666666666666777777777766665
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHHc
Q 006010 325 ASKCMPNEVTYGTIINGLVKLGRA-VDGARVLMSMEER 361 (664)
Q Consensus 325 ~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~ 361 (664)
..+ +-++.+...++.+....|+. +.+.+.+.++...
T Consensus 229 ~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 229 EKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred Hhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 543 23444555555555555555 4455555555543
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=7.2e-08 Score=93.26 Aligned_cols=259 Identities=16% Similarity=0.138 Sum_probs=152.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 006010 342 LVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEA 421 (664)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 421 (664)
+.+.|++.+|.-.|+...+.++. +...|..|.......++-..|+..+++..+.... +......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 45566666666666666665444 5566666666666666666666666666655322 455555555566666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH-Hh
Q 006010 422 EEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQM-LS 500 (664)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 500 (664)
.+.++..+....+. . + +..+ ...++...- +..++.. ......++|-++ ..
T Consensus 373 l~~L~~Wi~~~p~y-~--~--l~~a-~~~~~~~~~----------~s~~~~~-------------~l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKY-V--H--LVSA-GENEDFENT----------KSFLDSS-------------HLAHIQELFLEAARQ 423 (579)
T ss_pred HHHHHHHHHhCccc-h--h--cccc-CccccccCC----------cCCCCHH-------------HHHHHHHHHHHHHHh
Confidence 66666665542110 0 0 0000 000000000 0011111 122333344333 34
Q ss_pred CCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006010 501 RGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV 580 (664)
Q Consensus 501 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 580 (664)
.+..+|..+...|.-.|--.|++++|+..|+.++..+|. |..+||.|...+....+.++|+..|+++++ +.|..+
T Consensus 424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn---d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yV 498 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN---DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYV 498 (579)
T ss_pred CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc---hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCee
Confidence 444467777778888888888888888888888765554 677888888888888888888888888887 677754
Q ss_pred HHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc---C------CCCChHHHHHHHHHhcccchH
Q 006010 581 TCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK---F------LSPQTSTWERVVQELCRPKRI 651 (664)
Q Consensus 581 ~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~------~~~~~~~~~~l~~~~~~~g~~ 651 (664)
-...-+. ..|...|.+++|.++|-.++.. + ..++..+|..|=.++...++.
T Consensus 499 R~RyNlg--------------------IS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 499 RVRYNLG--------------------ISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred eeehhhh--------------------hhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 3222222 2378888888888888766543 1 111345787777777777776
Q ss_pred HHHHH
Q 006010 652 QAAIN 656 (664)
Q Consensus 652 ~~A~~ 656 (664)
|-+..
T Consensus 559 D~l~~ 563 (579)
T KOG1125|consen 559 DLLQE 563 (579)
T ss_pred hHHHH
Confidence 64443
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=1.5e-07 Score=91.05 Aligned_cols=248 Identities=17% Similarity=0.138 Sum_probs=168.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 006010 307 LCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDA 386 (664)
Q Consensus 307 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 386 (664)
+.+.|++.+|.-.|+..+... +-+...|.-|.......++-..|+..+.++.+..+. +....-.|...|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 345666777777777666653 335566666666666677777777777777766544 566666677777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH-----------HHHHhcCChhHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCChH
Q 006010 387 MKLWKQMMEKGCKPNTVVYSALI-----------DGLCRVGKPDEAEEILFE-MINNGCAANAFTYSSLMKGFFESGKGH 454 (664)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~li-----------~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~ 454 (664)
+..+++-+...++ |..+. ..+..........++|-+ ....+...|+.+...|.-.|--.|+++
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 7777766543211 00000 011111122333444444 444554578888888988999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCH-HhHHHHHHHHHHcCCHHHHHHHHHHh
Q 006010 455 KAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDV-VAYSSMIHGLCNAGSVEEALKLFNEM 533 (664)
Q Consensus 455 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (664)
+|+..|+.++... |.|..+||.|...++...+.++|+..|.++++. +|.- .+...|.-.|...|.+++|.+.|-.+
T Consensus 448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999876 667889999999999999999999999999984 7774 56667788899999999999999888
Q ss_pred hhcCCC-------CCCCHhHHHHHHHHHHHcCChhHHH
Q 006010 534 LCLEPK-------SQPDVFTYNILLNALCKQSNISHSI 564 (664)
Q Consensus 534 ~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~ 564 (664)
+....+ ..++..+|..|=.++.-.++.+-+.
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 654432 1122346666666666666655443
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.93 E-value=9.3e-06 Score=91.72 Aligned_cols=374 Identities=12% Similarity=0.013 Sum_probs=199.5
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHH
Q 006010 158 NSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGL 237 (664)
Q Consensus 158 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (664)
......+...|++.+|...+..... . ..-..............|+++.+..+++.+.......+..........+
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d---~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGD---A--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCC---H--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 3344445566666666654444321 0 0000111122233445677777777766653221111222233344445
Q ss_pred HhcCChhHHHHHHHHHHhCC--C----CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHH
Q 006010 238 CKENRLDEAVLLLDEMQVDG--C----FPT--PVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNE----VTYNTLIH 305 (664)
Q Consensus 238 ~~~g~~~~a~~~~~~~~~~~--~----~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~----~~~~~l~~ 305 (664)
...|+++++...+......- . .+. ......+...+...|++++|...+++....-...+. ...+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 56677777777776654320 0 111 111222334455677788887777776553111121 23445555
Q ss_pred HHHhcCChHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHH
Q 006010 306 GLCLKGNLDKAVSLLDRMVAS----KC-MPNEVTYGTIINGLVKLGRAVDGARVLMSMEER----KFH--V-NEYIYSTL 373 (664)
Q Consensus 306 ~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l 373 (664)
.+...|++++|...+++.... |. ......+..+...+...|++++|...+++.... +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 666778888877777776542 10 111233445556667778888877777665432 211 1 22334455
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHH--H--HHHH
Q 006010 374 ISGLFKEGKAEDAMKLWKQMMEKG--CKP--NTVVYSALIDGLCRVGKPDEAEEILFEMINNG--CAANAF--T--YSSL 443 (664)
Q Consensus 374 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~--~~~l 443 (664)
...+...|++++|...+++..... ..+ ....+..+...+...|+++.|...+..+.... ...... . ....
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 556666788888877777765421 111 12334445556677788888887777764421 011111 1 1112
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCcC-HHhHHHHHH
Q 006010 444 MKGFFESGKGHKAVEIWKDMAKNNCVYNE---VCYSVLIHGLCEDGKLREARMVWTQMLSR----GCKPD-VVAYSSMIH 515 (664)
Q Consensus 444 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~ 515 (664)
+..+...|+.+.|.+.+............ ..+..+..++...|+.++|...+++.... |..++ ..+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 24445577888887777665432211111 11345666777888888888888776643 22222 245666777
Q ss_pred HHHHcCCHHHHHHHHHHhhhc
Q 006010 516 GLCNAGSVEEALKLFNEMLCL 536 (664)
Q Consensus 516 ~~~~~g~~~~A~~~~~~~~~~ 536 (664)
++.+.|+.++|...+.+++..
T Consensus 740 a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 788888888888888888643
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.92 E-value=1e-07 Score=89.27 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=96.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHcCCC
Q 006010 411 GLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYS---VLIHGLCEDGK 487 (664)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~ 487 (664)
.+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .|..... +.+......+.
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchh
Confidence 445567777777666432 355666667777777777777777777776643 3333221 22222223346
Q ss_pred hHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCCh-hHHHHH
Q 006010 488 LREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNI-SHSIDL 566 (664)
Q Consensus 488 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~ 566 (664)
+.+|..+|+++.+. ..++..+.+.++.++...|++++|.+++++++..+++ +..+...++.+....|+. +.+.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~---~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN---DPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC---HHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhCCChhHHHHH
Confidence 78888888887654 4567777888888888888888888888888543333 555666677776777776 556667
Q ss_pred HHHHHHCCCCCCH
Q 006010 567 LNSMMDRGCDPDL 579 (664)
Q Consensus 567 ~~~~~~~~~~p~~ 579 (664)
+.++.. ..|+.
T Consensus 259 l~qL~~--~~p~h 269 (290)
T PF04733_consen 259 LSQLKQ--SNPNH 269 (290)
T ss_dssp HHHCHH--HTTTS
T ss_pred HHHHHH--hCCCC
Confidence 777765 45554
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.87 E-value=1.2e-06 Score=87.28 Aligned_cols=232 Identities=14% Similarity=0.125 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006010 368 YIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGF 447 (664)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 447 (664)
..-..+...+...|-...|+.+++++. .|..++.+|+..|+..+|..+..+.+++ +|++..|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 334556677778888888888887653 4566788888888888888888888774 78888888888877
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHH
Q 006010 448 FESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEAL 527 (664)
Q Consensus 448 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 527 (664)
....-+++|.++.+..... +-..+.......+++.++.+.|+.-.+.. +.-..+|-.+..+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 7766777777777664432 11112222334678888888888776642 223467878888888888888888
Q ss_pred HHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHH
Q 006010 528 KLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELA 607 (664)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~ 607 (664)
+.|...+..+|+ +...||.+-.+|.+.|+-.+|...+++..+.+..+- ..|...+-.
T Consensus 540 ~aF~rcvtL~Pd---~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w-~iWENymlv------------------- 596 (777)
T KOG1128|consen 540 KAFHRCVTLEPD---NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW-QIWENYMLV------------------- 596 (777)
T ss_pred HHHHHHhhcCCC---chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC-eeeechhhh-------------------
Confidence 888888776665 667888888888888888888888888887553322 222222222
Q ss_pred HHhhhcCCcchHHHHHHHHHHc-CCCCChHHHHHHHH
Q 006010 608 IRLFKRQRTSGGFKIVEVMLQK-FLSPQTSTWERVVQ 643 (664)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~ 643 (664)
..+.|.+++|++.+.++... ....|..+...++.
T Consensus 597 --svdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~ 631 (777)
T KOG1128|consen 597 --SVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVR 631 (777)
T ss_pred --hhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHH
Confidence 56788888888888887764 11224444444433
No 110
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.85 E-value=0.00021 Score=73.52 Aligned_cols=223 Identities=14% Similarity=0.126 Sum_probs=124.1
Q ss_pred HHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHh
Q 006010 92 HYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYH 171 (664)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 171 (664)
-....+++..|.+....+.+..+. ...+...-+-.+.+.|+.++|..+++..-.. ...|..+...+-.+|...++.+
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~--~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGL--KGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccC--CCCchHHHHHHHHHHHHHhhhh
Confidence 345667788888888887776543 2222222233456788888888777765222 2336677788888888888888
Q ss_pred HHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhH----HHHHHhhcccCCCCCCHHHHHHHHHHHHhcC-C----
Q 006010 172 RALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDN----AIQLFREMPVRNCEPDIYTYCTLMDGLCKEN-R---- 242 (664)
Q Consensus 172 ~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---- 242 (664)
+|..+|+++.. ..|+......+..+|.+.+++.+ |.+++.... -..+.+=++++.+...- .
T Consensus 95 ~~~~~Ye~~~~-----~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p-----k~~yyfWsV~Slilqs~~~~~~~ 164 (932)
T KOG2053|consen 95 EAVHLYERANQ-----KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP-----KRAYYFWSVISLILQSIFSENEL 164 (932)
T ss_pred HHHHHHHHHHh-----hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----cccchHHHHHHHHHHhccCCccc
Confidence 88888888865 44665555566667777766654 444444332 23333333444443311 1
Q ss_pred -----hhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 006010 243 -----LDEAVLLLDEMQVDG-CFPTPVTFNVLINGLCKNGELGRAAKLVDN-MFLKGCLPNEVTYNTLIHGLCLKGNLDK 315 (664)
Q Consensus 243 -----~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 315 (664)
..-|.+.++.+.+.+ -.-+..-...-...+-..|++++|.+++.. ..+.-..-+...-+.-+..+...+++.+
T Consensus 165 ~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 165 LDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred ccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence 123444555554443 111112222223344456667777777633 2222222233333445556666777777
Q ss_pred HHHHHHHHHHCC
Q 006010 316 AVSLLDRMVASK 327 (664)
Q Consensus 316 a~~~~~~~~~~~ 327 (664)
..++-.++...|
T Consensus 245 l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 245 LFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHhC
Confidence 777777776664
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.81 E-value=3.4e-06 Score=89.92 Aligned_cols=201 Identities=13% Similarity=0.102 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHH
Q 006010 118 EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT---VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLT 194 (664)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 194 (664)
...|...+......++.+.|++++++++..-++... ...|.++++....-|.-+...++|+++.+ +-.....
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq-----ycd~~~V 1532 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ-----YCDAYTV 1532 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH-----hcchHHH
Confidence 334445555555555555555555554443222111 12344444444444444444445554443 1111223
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHH
Q 006010 195 FNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPT---PVTFNVLING 271 (664)
Q Consensus 195 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~ 271 (664)
|..|...|.+.+.+++|.++++.|.+.= ......|..++..+.+.++-+.|..++.+..+. -|. .......+..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 4444444445555555555555544331 123344444444444444444444444444432 111 1222223333
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006010 272 LCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASK 327 (664)
Q Consensus 272 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (664)
-.+.|+.+++..+|+.....-++ -...|+..++.-.+.|+.+.+..+|+++...+
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 34444444444444444433211 23344444444444444444444444444443
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=1.4e-06 Score=86.92 Aligned_cols=219 Identities=17% Similarity=0.142 Sum_probs=178.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010 400 PNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLI 479 (664)
Q Consensus 400 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 479 (664)
|--..-..+...+...|-...|..++++.. .|..++.+|...|+..+|..+..+..+. +|+...|..++
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333444556777888999999999998754 5677888999999999999999888873 58999999888
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC
Q 006010 480 HGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN 559 (664)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 559 (664)
+......-+++|.++.+..-.. +-..+.....+.++++++.+.|+..+++++. -..+|-.+..+..+.++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl---q~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL---QLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc---chhHHHhccHHHHHHhh
Confidence 8887777788888888765432 2222233334579999999999999776665 56789889999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHH-HHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHH
Q 006010 560 ISHSIDLLNSMMDRGCDPDLV-TCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTW 638 (664)
Q Consensus 560 ~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 638 (664)
++.|.+.|...+. ..||.. .|+.+-.+ |.+.|.-.+|...++++.+-. ..+..+|
T Consensus 535 ~q~av~aF~rcvt--L~Pd~~eaWnNls~a---------------------yi~~~~k~ra~~~l~EAlKcn-~~~w~iW 590 (777)
T KOG1128|consen 535 EQAAVKAFHRCVT--LEPDNAEAWNNLSTA---------------------YIRLKKKKRAFRKLKEALKCN-YQHWQIW 590 (777)
T ss_pred hHHHHHHHHHHhh--cCCCchhhhhhhhHH---------------------HHHHhhhHHHHHHHHHHhhcC-CCCCeee
Confidence 9999999999998 678765 47777777 999999999999999999865 6677999
Q ss_pred HHHHHHhcccchHHHHHHHHHhhhc
Q 006010 639 ERVVQELCRPKRIQAAINKCWSNLY 663 (664)
Q Consensus 639 ~~l~~~~~~~g~~~~A~~~~~~~l~ 663 (664)
....-...+.|.+++|++.|++.+.
T Consensus 591 ENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 591 ENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred echhhhhhhcccHHHHHHHHHHHHH
Confidence 9999999999999999999998653
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.76 E-value=5.9e-07 Score=83.16 Aligned_cols=182 Identities=12% Similarity=0.075 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC----HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHH
Q 006010 472 EVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD----VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTY 547 (664)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 547 (664)
...+..++..+...|++++|...+++++.. .|+ ..++..+..++...|++++|...++++++..|+...-...+
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 334444555555666666666666665543 222 13445555666666666666666666654333321111233
Q ss_pred HHHHHHHHHc--------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchH
Q 006010 548 NILLNALCKQ--------SNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGG 619 (664)
Q Consensus 548 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 619 (664)
..+..++... |++++|.+.++++.+ ..|+.......+..+...... -......++..+.+.|++++|
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~~~~~---~~~~~~~~a~~~~~~g~~~~A 185 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDYLRNR---LAGKELYVARFYLKRGAYVAA 185 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCChHHH
Confidence 3344444433 566667777776665 344432211111110000000 000012456669999999999
Q ss_pred HHHHHHHHHcC--CCCChHHHHHHHHHhcccchHHHHHHHHHh
Q 006010 620 FKIVEVMLQKF--LSPQTSTWERVVQELCRPKRIQAAINKCWS 660 (664)
Q Consensus 620 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 660 (664)
...++++.+.. .+..+..+..++.++.+.|++++|.+.+..
T Consensus 186 ~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 186 INRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred HHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999861 122458899999999999999999997654
No 114
>PLN02789 farnesyltranstransferase
Probab=98.73 E-value=1.4e-05 Score=76.03 Aligned_cols=206 Identities=12% Similarity=0.059 Sum_probs=134.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh--
Q 006010 412 LCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESG-KGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKL-- 488 (664)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-- 488 (664)
+...+..++|+....++++.. +.+..+|+.-...+...| ++++++..++.+.+.+ +.+..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 344566777777777777764 444555655555555666 5678888888877765 45556666555555555553
Q ss_pred HHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc---CCh----h
Q 006010 489 REARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ---SNI----S 561 (664)
Q Consensus 489 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~ 561 (664)
++++.+++++++.. +-+..+|.....++.+.|+++++++.++++++.++. |...|+.....+.+. |.. +
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~---N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR---NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC---chhHHHHHHHHHHhccccccccccHH
Confidence 67788888888754 335678888888888888899999999998765554 666777766665544 222 4
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHhhhhhccCCCCchhhhHHHHHHhhh----cCCcchHHHHHHHHHHcCCCCChH
Q 006010 562 HSIDLLNSMMDRGCDPDLV-TCNIFLTALKEKLEAPQDGTDFLNELAIRLFK----RQRTSGGFKIVEVMLQKFLSPQTS 636 (664)
Q Consensus 562 ~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 636 (664)
+++...++++. ..|+.. .|+.+... +.. .++..+|.+.+.+..+.+ +.++.
T Consensus 201 ~el~y~~~aI~--~~P~N~SaW~Yl~~l---------------------l~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~ 256 (320)
T PLN02789 201 SELKYTIDAIL--ANPRNESPWRYLRGL---------------------FKDDKEALVSDPEVSSVCLEVLSKD-SNHVF 256 (320)
T ss_pred HHHHHHHHHHH--hCCCCcCHHHHHHHH---------------------HhcCCcccccchhHHHHHHHhhccc-CCcHH
Confidence 67777777776 456544 45555444 333 244456777777766532 33556
Q ss_pred HHHHHHHHhcc
Q 006010 637 TWERVVQELCR 647 (664)
Q Consensus 637 ~~~~l~~~~~~ 647 (664)
...-|++.++.
T Consensus 257 al~~l~d~~~~ 267 (320)
T PLN02789 257 ALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHh
Confidence 67777777765
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.72 E-value=1.1e-05 Score=86.20 Aligned_cols=207 Identities=14% Similarity=0.155 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006010 366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEK-GCK---PNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYS 441 (664)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 441 (664)
+...|-..|....+.++.++|.++.++++.. ++. --...|.++++.-...|.-+...++|+++.+.. .....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 5566777777788888888888888887753 111 123467777777777788888889999988763 3456778
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC---HHhHHHHHHHHH
Q 006010 442 SLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD---VVAYSSMIHGLC 518 (664)
Q Consensus 442 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 518 (664)
.|...|.+.+..++|.++++.|.+.- ......|...+..+.++++-++|..++.+++.. .|. .....-.+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 88899999999999999999998864 356778999999999999999999999988875 444 233445566667
Q ss_pred HcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006010 519 NAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV 580 (664)
Q Consensus 519 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 580 (664)
+.|+.+++..+|+..+...|. -...|+.+++.-.++|+.+.+..+|++.+..++.|-..
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK---RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK---RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc---chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 889999999999998754443 55689999999999999999999999999887777654
No 116
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=3.6e-05 Score=73.27 Aligned_cols=204 Identities=12% Similarity=0.075 Sum_probs=131.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-
Q 006010 376 GLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVG-KPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKG- 453 (664)
Q Consensus 376 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 453 (664)
.+...+..++|+.+..++++.... +..+|+....++...| ++++++..++++++.+ +.+..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 344456777777777777765322 3345555555555556 5678888888877764 44555665554444555542
Q ss_pred -HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc---CC----HHH
Q 006010 454 -HKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA---GS----VEE 525 (664)
Q Consensus 454 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~ 525 (664)
++++.+++.+.+.+ +.+..+|+.....+...|+++++++.++++++.+. -+..+|+....++.+. |. .++
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHH
Confidence 56777887777766 56777888888888888888888888888887653 3556777666665544 22 246
Q ss_pred HHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc----CChhHHHHHHHHHHHCCCCCCH-HHHHHHHHh
Q 006010 526 ALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ----SNISHSIDLLNSMMDRGCDPDL-VTCNIFLTA 588 (664)
Q Consensus 526 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~ 588 (664)
++.+..+++...|. |...|+.+...+... ++..+|.+++.+..+ ..|+. .....++..
T Consensus 202 el~y~~~aI~~~P~---N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~ 264 (320)
T PLN02789 202 ELKYTIDAILANPR---NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDL 264 (320)
T ss_pred HHHHHHHHHHhCCC---CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHH
Confidence 77777777665555 677888777777663 344668788777665 34433 334444444
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.69 E-value=3.2e-06 Score=78.23 Aligned_cols=187 Identities=13% Similarity=0.055 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHH
Q 006010 366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCK-PN-TVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANA---FTY 440 (664)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 440 (664)
....+..++..+.+.|++++|...++++...... |. ..++..+..++...|++++|...++++++.. +.+. ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHH
Confidence 5566777778888888899998888888775321 11 1356667778888888888888888888763 2122 234
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHH
Q 006010 441 SSLMKGFFES--------GKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSS 512 (664)
Q Consensus 441 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 512 (664)
..+...+... |+.++|.+.++.+.... +.+...+..+..... .. ... ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~-------~~~-------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LR-------NRL-------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HH-------HHH-------HHHHHH
Confidence 4455555544 66777888888777654 222222222111100 00 000 011225
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 513 MIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
+...+.+.|++++|...+++++...++.......+..+..++.+.|++++|...++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 667788999999999999999765554434566888999999999999999999998875
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.64 E-value=4.4e-06 Score=87.73 Aligned_cols=143 Identities=12% Similarity=0.112 Sum_probs=107.4
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCH-HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHH
Q 006010 469 VYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDV-VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTY 547 (664)
Q Consensus 469 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 547 (664)
+.+...+-.|.....+.|+.++|..+|+...+. .|+. .....++.++.+.+++++|...+++.+..++. +....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~---~~~~~ 157 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS---SAREI 157 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC---CHHHH
Confidence 456778888888888999999999999988875 5664 56777888888999999999999988654444 56677
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHH
Q 006010 548 NILLNALCKQSNISHSIDLLNSMMDRGCDPD-LVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVM 626 (664)
Q Consensus 548 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (664)
..+..++.+.|++++|..+|+++.. ..|+ ...+..+... +...|+.++|...|+++
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~---------------------l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQS---------------------LTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHH---------------------HHHcCCHHHHHHHHHHH
Confidence 7788888899999999999999887 3444 3334333333 88889999999999998
Q ss_pred HHcCCCCChHHHHH
Q 006010 627 LQKFLSPQTSTWER 640 (664)
Q Consensus 627 ~~~~~~~~~~~~~~ 640 (664)
.+. ..+...-|..
T Consensus 215 ~~~-~~~~~~~~~~ 227 (694)
T PRK15179 215 LDA-IGDGARKLTR 227 (694)
T ss_pred HHh-hCcchHHHHH
Confidence 875 3334444333
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=8.7e-06 Score=71.99 Aligned_cols=119 Identities=16% Similarity=0.239 Sum_probs=82.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHH-HHcCC--HHHH
Q 006010 450 SGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGL-CNAGS--VEEA 526 (664)
Q Consensus 450 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 526 (664)
.++.+++...++...+.+ +.+...|..+...|...|++++|...|++..... +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666666655 5667777777777777778888877777777653 22456666666653 55566 4778
Q ss_pred HHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006010 527 LKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDR 573 (664)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 573 (664)
.++++++++.++. +...+..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~---~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN---EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888877665554 5566777777777788888888888887763
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.61 E-value=7.6e-06 Score=72.36 Aligned_cols=153 Identities=12% Similarity=0.168 Sum_probs=114.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCH
Q 006010 444 MKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSV 523 (664)
Q Consensus 444 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 523 (664)
+..|...|+++.+....+.+.. +. ..+...++.+++...++..+... +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4567888888876544433221 11 01223677788888888888764 45678999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCHhHHHHHHHHH-HHcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCch
Q 006010 524 EEALKLFNEMLCLEPKSQPDVFTYNILLNAL-CKQSN--ISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGT 600 (664)
Q Consensus 524 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~ 600 (664)
++|...|++++...++ +...+..+..++ ...|+ .++|.+++++..+ ..|+......++...
T Consensus 90 ~~A~~a~~~Al~l~P~---~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~----------- 153 (198)
T PRK10370 90 DNALLAYRQALQLRGE---NAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASD----------- 153 (198)
T ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHH-----------
Confidence 9999999999876655 777888888864 67777 5999999999998 677665544444432
Q ss_pred hhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCCh
Q 006010 601 DFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQT 635 (664)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 635 (664)
+.+.|++++|...|+++.+. .+|+.
T Consensus 154 ---------~~~~g~~~~Ai~~~~~aL~l-~~~~~ 178 (198)
T PRK10370 154 ---------AFMQADYAQAIELWQKVLDL-NSPRV 178 (198)
T ss_pred ---------HHHcCCHHHHHHHHHHHHhh-CCCCc
Confidence 89999999999999999986 44444
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=9e-05 Score=65.16 Aligned_cols=50 Identities=18% Similarity=0.030 Sum_probs=21.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010 270 NGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVA 325 (664)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (664)
..|+..|++++|++...... +......=+..+.+..+++-|.+.+++|.+
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455555555555444311 222222223333444445555555555544
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=2.2e-05 Score=75.20 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=97.3
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHH
Q 006010 447 FFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEE 525 (664)
Q Consensus 447 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 525 (664)
+...|++++|+..++.+.... |.|...+......+.+.++.++|.+.+++++.. .|+ ......+..++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 445677777777777766654 455666666667777777777777777777764 455 4455667777777777777
Q ss_pred HHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHH
Q 006010 526 ALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNE 605 (664)
Q Consensus 526 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 605 (664)
|+.+++..+..++. |+..|..|..+|...|+..++.....++
T Consensus 393 ai~~L~~~~~~~p~---dp~~w~~LAqay~~~g~~~~a~~A~AE~----------------------------------- 434 (484)
T COG4783 393 AIRILNRYLFNDPE---DPNGWDLLAQAYAELGNRAEALLARAEG----------------------------------- 434 (484)
T ss_pred HHHHHHHHhhcCCC---CchHHHHHHHHHHHhCchHHHHHHHHHH-----------------------------------
Confidence 77777777543333 6677777777777777776666544443
Q ss_pred HHHHhhhcCCcchHHHHHHHHHHcCCCCChHHH
Q 006010 606 LAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTW 638 (664)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 638 (664)
|.-.|++++|...+....++ +..+...|
T Consensus 435 ----~~~~G~~~~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 435 ----YALAGRLEQAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred ----HHhCCCHHHHHHHHHHHHHh-ccCCcHHH
Confidence 55567777777777777665 34444444
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.60 E-value=1.3e-05 Score=70.44 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=84.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc
Q 006010 441 SSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA 520 (664)
Q Consensus 441 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 520 (664)
..+...+...|+-+....+........ +.+.......+....+.|++.+|...+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 445555666666666666665544332 3455555566777777777777777777776643 55667777777777777
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 521 GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 521 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
|++++|..-|.+++++.++ +...++.+...+.-.|+++.|..++.....
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~---~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 148 GRFDEARRAYRQALELAPN---EPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred cChhHHHHHHHHHHHhccC---CchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777777777655444 455566666667777777777777777765
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=5.9e-05 Score=66.30 Aligned_cols=121 Identities=14% Similarity=0.122 Sum_probs=58.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----
Q 006010 234 MDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL---- 309 (664)
Q Consensus 234 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~---- 309 (664)
...|++.|++++|++...... +......=...+.+..+++.|.+.+++|.+.. +..+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 344555555555555554411 11111111223344455555555555555431 33344444444433
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 006010 310 KGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFH 364 (664)
Q Consensus 310 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 364 (664)
.+.+..|.-+|++|-+. ..|++.+.+-.+.++...|++++|..+++........
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 23455555555555442 3455555555555555555666666555555554433
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.57 E-value=1e-05 Score=71.00 Aligned_cols=159 Identities=13% Similarity=0.052 Sum_probs=102.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHH
Q 006010 122 IFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKT 201 (664)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 201 (664)
..+...+...|+-+.+..+....... .+.+.......+....+.|++..|+..+.+... .-++|...|+.+.-+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~----l~p~d~~~~~~lgaa 143 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR----LAPTDWEAWNLLGAA 143 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc----cCCCChhhhhHHHHH
Confidence 55556666666666666666664332 344555566677777777777777777777765 233456677777777
Q ss_pred HHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006010 202 VCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRA 281 (664)
Q Consensus 202 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 281 (664)
|-+.|+++.|..-|.+..+.. +-+....+.+.-.+.-.|+.+.|..++......+ .-|..+-..+.......|++++|
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHH
Confidence 777777777777777766553 3345566777777777777777777777766553 22555666666667777777777
Q ss_pred HHHHHHH
Q 006010 282 AKLVDNM 288 (664)
Q Consensus 282 ~~~~~~~ 288 (664)
.++...-
T Consensus 222 ~~i~~~e 228 (257)
T COG5010 222 EDIAVQE 228 (257)
T ss_pred Hhhcccc
Confidence 7666543
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.55 E-value=5.2e-06 Score=69.29 Aligned_cols=118 Identities=8% Similarity=-0.015 Sum_probs=83.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcC
Q 006010 458 EIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLE 537 (664)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (664)
.++++..+.+ |+ .+..+...+...|++++|...|+..+... +.+...|..+..++...|++++|...|++++...
T Consensus 14 ~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4455555433 33 24445667778888888888888887753 3356777888888888888888888888886655
Q ss_pred CCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006010 538 PKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIF 585 (664)
Q Consensus 538 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 585 (664)
++ +...+..+..++...|++++|+..|++.++ ..|+...+...
T Consensus 89 p~---~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~~~ 131 (144)
T PRK15359 89 AS---HPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWSEI 131 (144)
T ss_pred CC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHH
Confidence 44 667777888888888888888888888887 56665554433
No 127
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=1.2e-07 Score=55.67 Aligned_cols=31 Identities=48% Similarity=0.903 Sum_probs=13.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010 258 CFPTPVTFNVLINGLCKNGELGRAAKLVDNM 288 (664)
Q Consensus 258 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (664)
+.||..+|+.||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444433
No 128
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1.5e-07 Score=55.31 Aligned_cols=32 Identities=63% Similarity=1.111 Sum_probs=15.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010 222 NCEPDIYTYCTLMDGLCKENRLDEAVLLLDEM 253 (664)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 253 (664)
|+.||..+|++|+++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34445555555555555555555555554444
No 129
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.52 E-value=0.0022 Score=66.50 Aligned_cols=218 Identities=11% Similarity=0.059 Sum_probs=126.9
Q ss_pred hHHHHHHhhCCCCCCCCCChhHHHHHHH--HHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006010 64 PFSDEIFNSTPKLGSYQLGDSTFYSLIQ--HYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLF 141 (664)
Q Consensus 64 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 141 (664)
..|++-.....++.+ +. .|..++. .+.+.|..++|..+++.....+.. +..++-.+-.+|.+.|..++|..+|
T Consensus 26 kkal~~~~kllkk~P---n~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHP---NA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHCC---Cc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 345555555555432 22 2333333 346778888888777666654433 6667777778888888888888888
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCC----------hhHH
Q 006010 142 HTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGL----------VDNA 211 (664)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~A 211 (664)
+..... .|+......+..+|++-+++.+-.+.--++.+ .++-+...|=+++....+.-. ..-|
T Consensus 101 e~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK----~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 101 ERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYK----NFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 887654 45566666777777777766553333333332 122244555556665554321 1235
Q ss_pred HHHHhhcccCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010 212 IQLFREMPVRN-CEPDIYTYCTLMDGLCKENRLDEAVLLLD-EMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMF 289 (664)
Q Consensus 212 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 289 (664)
...++.+.+.+ .-.+..-.......+...|++++|.+++. ...+.-..-+...-+.-+..+...++|.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55556655443 11122223333445556778888888873 33333233344444566677777888888888888877
Q ss_pred HcCC
Q 006010 290 LKGC 293 (664)
Q Consensus 290 ~~g~ 293 (664)
..|.
T Consensus 254 ~k~~ 257 (932)
T KOG2053|consen 254 EKGN 257 (932)
T ss_pred HhCC
Confidence 7753
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.52 E-value=3.2e-05 Score=82.19 Aligned_cols=247 Identities=9% Similarity=0.072 Sum_probs=169.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010 366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNT-VVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLM 444 (664)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 444 (664)
+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++..++..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 5667888899998999999999999977765 3333 3333333356666665544443 233
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHH
Q 006010 445 KGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVE 524 (664)
Q Consensus 445 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 524 (664)
.......++.-+..+...+... ..+..++..+..+|-+.|+.++|..+|+++++.. +-|..+.+.++..|... +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 3333344444444444455543 2555678889999999999999999999999976 44678899999999988 999
Q ss_pred HHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHhhhhhccCCCCchhhh
Q 006010 525 EALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT-CNIFLTALKEKLEAPQDGTDFL 603 (664)
Q Consensus 525 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~ 603 (664)
+|++++.+++. .+...+++..+.++|.++.. ..|+... +..++........ -.....++
T Consensus 167 KA~~m~~KAV~-----------------~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~-~~~~~~~~ 226 (906)
T PRK14720 167 KAITYLKKAIY-----------------RFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHRE-FTRLVGLL 226 (906)
T ss_pred HHHHHHHHHHH-----------------HHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhc-cchhHHHH
Confidence 99999998843 16667799999999999998 4565444 3334444332222 23334556
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhc----ccchHHHHHH
Q 006010 604 NELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELC----RPKRIQAAIN 656 (664)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~ 656 (664)
.-|...|.+..+|+++..+++.+.+. -+.|......++++|. .+.+++++++
T Consensus 227 ~~l~~~y~~~~~~~~~i~iLK~iL~~-~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~ 282 (906)
T PRK14720 227 EDLYEPYKALEDWDEVIYILKKILEH-DNKNNKAREELIRFYKEKYKDHSLLEDYLK 282 (906)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhc-CCcchhhHHHHHHHHHHHccCcchHHHHHH
Confidence 66777788999999999999999985 2335566666666654 3344555544
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.50 E-value=0.0001 Score=78.48 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010 229 TYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMF 289 (664)
Q Consensus 229 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 289 (664)
++..+..+|-+.|+.+++..+++++.+.. +-++.+.|.+...|... ++++|++++.+..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 44445555555555555555555555443 23444555555555544 5555555544443
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.48 E-value=1.5e-05 Score=66.52 Aligned_cols=97 Identities=10% Similarity=-0.069 Sum_probs=66.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHH
Q 006010 440 YSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCN 519 (664)
Q Consensus 440 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 519 (664)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...... +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445566667777777777777776655 4566677777777777777777777777777643 3345667777777777
Q ss_pred cCCHHHHHHHHHHhhhcCC
Q 006010 520 AGSVEEALKLFNEMLCLEP 538 (664)
Q Consensus 520 ~g~~~~A~~~~~~~~~~~~ 538 (664)
.|++++|+..|+.++...+
T Consensus 105 ~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred cCCHHHHHHHHHHHHHhCC
Confidence 7777777777777765433
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.48 E-value=7.5e-05 Score=78.69 Aligned_cols=183 Identities=8% Similarity=0.026 Sum_probs=139.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006010 398 CKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSV 477 (664)
Q Consensus 398 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 477 (664)
...+...+..|.....+.|.+++|..+++.+.+.. |.+......+...+.+.+++++|+...++..... +.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 34568888889999999999999999999999874 5567788888999999999999999999999877 566777888
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc
Q 006010 478 LIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ 557 (664)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 557 (664)
+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++++.... +....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~---~~~~~~~~~~------ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG---DGARKLTRRL------ 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC---cchHHHHHHH------
Confidence 8889999999999999999999842 23468899999999999999999999999964322 2334444433
Q ss_pred CChhHHHHHHHHHHHC----CCCCCHHHHHHHHHhhhhh
Q 006010 558 SNISHSIDLLNSMMDR----GCDPDLVTCNIFLTALKEK 592 (664)
Q Consensus 558 g~~~~A~~~~~~~~~~----~~~p~~~~~~~ll~~~~~~ 592 (664)
+++..-..+++++.-. |.......+..++..+++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 230 VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 3444556667766533 2333334455566555543
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.43 E-value=8.1e-06 Score=68.56 Aligned_cols=132 Identities=14% Similarity=0.095 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010 509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA 588 (664)
Q Consensus 509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 588 (664)
.|..++..+ ..++...+...++.+....++........-.+...+...|++++|...|+...+.. |+.. +..+...
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~-l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPE-LKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHH-HHHHHHH
Confidence 344444444 47788888888888764433322223333445567788888888888888888743 4442 2222222
Q ss_pred hhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 589 LKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 589 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
.|+.++...|++++|...++.... -...+..+...++++.+.|++++|++.|++.|
T Consensus 90 ----------------~LA~~~~~~~~~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 ----------------RLARILLQQGQYDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ----------------HHHHHHHHcCCHHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 345568888888888888876432 24456677788888999999999988887754
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=0.00033 Score=61.26 Aligned_cols=186 Identities=16% Similarity=0.197 Sum_probs=108.8
Q ss_pred CChHHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006010 381 GKAEDAMKLWKQMME---KG-CKPNTV-VYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHK 455 (664)
Q Consensus 381 ~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 455 (664)
.+.++..+++..+.. .| ..++.. .|..++-+....|+.+.|...++.+...- +.+..+-..-...+...|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 345555555555543 12 233332 23334444555666677777766665542 3343333333334455677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 006010 456 AVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLC 535 (664)
Q Consensus 456 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (664)
|+++++.+.+.+ |.|..++-.-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777777665 555566666566666666666776666666654 455677777777777777777777777777764
Q ss_pred cCCCCCCCHhHHHHHHHHHHHcC---ChhHHHHHHHHHHH
Q 006010 536 LEPKSQPDVFTYNILLNALCKQS---NISHSIDLLNSMMD 572 (664)
Q Consensus 536 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 572 (664)
..|- ++..+..+...+.-.| +.+-|.+.|.+.++
T Consensus 183 ~~P~---n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 183 IQPF---NPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred cCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3332 4445555555544333 45566777777766
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.40 E-value=1.5e-05 Score=66.33 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=84.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCC
Q 006010 460 WKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPK 539 (664)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 539 (664)
++...... +.+......+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|..++++++...+
T Consensus 6 ~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p- 82 (135)
T TIGR02552 6 LKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP- 82 (135)
T ss_pred HHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 44444433 2344455666777778888888888888887753 33567777888888888888888888888754332
Q ss_pred CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010 540 SQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA 588 (664)
Q Consensus 540 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 588 (664)
.+...+..+...+...|++++|...+++..+ ..|+...+..+...
T Consensus 83 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~ 127 (135)
T TIGR02552 83 --DDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEYSELKER 127 (135)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchHHHHHHH
Confidence 2556677777788888888888888888887 56666665544444
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=0.00012 Score=70.21 Aligned_cols=149 Identities=15% Similarity=0.114 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC-HHHH
Q 006010 117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN-TLTF 195 (664)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~ 195 (664)
....+......+...|.+++|+..++.++.. .|.|+..+......+.+.|+..+|.+.+++++. ..|+ ....
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~-----l~P~~~~l~ 377 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA-----LDPNSPLLQ 377 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCccHHH
Confidence 3446666667777889999999999888765 566777788888889999999999999999877 4455 4566
Q ss_pred HHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006010 196 NLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKN 275 (664)
Q Consensus 196 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 275 (664)
..+..++.+.|++.+|+..++...... +.|+..|..|..+|...|+..++.....+ .|...
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~ 438 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALA 438 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhC
Confidence 677888889999999999988887765 67888899999999999888777665444 34556
Q ss_pred CChhHHHHHHHHHHHc
Q 006010 276 GELGRAAKLVDNMFLK 291 (664)
Q Consensus 276 g~~~~a~~~~~~~~~~ 291 (664)
|+++.|...+....+.
T Consensus 439 G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 439 GRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8888888887777665
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.00078 Score=59.02 Aligned_cols=189 Identities=13% Similarity=0.059 Sum_probs=87.5
Q ss_pred CHhHHHHHHHHHHhcccCC-CCcCHH-HHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006010 169 LYHRALEFYNHIVNAKHMN-ILPNTL-TFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEA 246 (664)
Q Consensus 169 ~~~~A~~~~~~~~~~~~~~-~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 246 (664)
+.++.++++..+......+ ..++.. .|..++-+....|+.+.|...++++...- +-+...-..-.-.+-..|.+++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 4445555555544433233 333433 33334444445556666666665554431 11111111111223345556666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006010 247 VLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVAS 326 (664)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 326 (664)
+++++.+.+.+ +.|.+++-.=+...-..|+--+|++-+.+..+. ...|...|.-+...|...|++++|.-.+++++-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 66666655554 334444444444444455555555555555444 2335556666666666666666666666655543
Q ss_pred CCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHc
Q 006010 327 KCMPNEVTYGTIINGLVKLG---RAVDGARVLMSMEER 361 (664)
Q Consensus 327 ~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~ 361 (664)
. +.++..|..+.+.+.-.| +.+-+.+.+.+..+.
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 2 223333444444333322 233444444444443
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=5.1e-05 Score=63.08 Aligned_cols=96 Identities=10% Similarity=0.105 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 006010 84 STFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNV 163 (664)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (664)
.....+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...|+..... .+.+...+..+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 334444555555555555555555555443 224445555555555555555555555554332 23344445555555
Q ss_pred HHHcCCHhHHHHHHHHHHh
Q 006010 164 IIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 164 ~~~~~~~~~A~~~~~~~~~ 182 (664)
+...|++++|...|+...+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555544
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.10 E-value=0.00014 Score=70.73 Aligned_cols=122 Identities=13% Similarity=0.144 Sum_probs=63.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH
Q 006010 123 FIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTV 202 (664)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 202 (664)
.++..+...++++.|+++|+++.+. .|+ ....+++.+...++-.+|.+++++.++. .+.+..........+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~----~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE----NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh----CCCCHHHHHHHHHHH
Confidence 4444444555566666666665432 233 2333555555555555666665555541 112344444445555
Q ss_pred HhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010 203 CRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQ 254 (664)
Q Consensus 203 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 254 (664)
.+.++++.|+++.+++.... +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 55666666666666655542 2334456666666666666666665555544
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.07 E-value=0.00029 Score=59.16 Aligned_cols=117 Identities=14% Similarity=0.102 Sum_probs=49.7
Q ss_pred cCCHHHHHHHHHHhhhcCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC--HHHHHHHHHHHHhcCC
Q 006010 131 AHLVEEAIRLFHTMVDEFHCKR-TVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN--TLTFNLVIKTVCRLGL 207 (664)
Q Consensus 131 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~ 207 (664)
.++...+...++.+...++..+ .......+...+...|++++|...|+.+.. ....|+ ......+...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~---~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA---NAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4444555444555444322111 122333344445555555555555555544 111111 1122233444445555
Q ss_pred hhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006010 208 VDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDE 252 (664)
Q Consensus 208 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 252 (664)
+++|+..++...... .....+.....+|.+.|+.++|...|+.
T Consensus 101 ~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 101 YDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555554433221 2233344444555555555555555543
No 142
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00091 Score=62.82 Aligned_cols=246 Identities=15% Similarity=0.039 Sum_probs=109.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006010 302 TLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEG 381 (664)
Q Consensus 302 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (664)
.....+.+..++..|+..+....+.. +-+..-|.--+..+...++++++.--.+.-.+.... ..........++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhH
Confidence 34456666777777777777777664 223444544555556666666665444433332111 1112333334444444
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHHhcCChHHHHHH
Q 006010 382 KAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGC-AANAFTYSSL-MKGFFESGKGHKAVEI 459 (664)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~ 459 (664)
+..+|.+.++.-. .+ ....++..++....... +|....+..+ ..++.-.|++++|.+.
T Consensus 132 ~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 4444444444111 00 01111111111111111 1222222222 1233445555655555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhH-------------HHHHHHHHHcCCHHHH
Q 006010 460 WKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAY-------------SSMIHGLCNAGSVEEA 526 (664)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-------------~~l~~~~~~~g~~~~A 526 (664)
--.+.+.+ ..+....-.-..++--.++.+.|...|++.+.. .|+...- ..-.+-..+.|++..|
T Consensus 192 a~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 192 AIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 55555433 112221111112233445555666666555543 2332111 1111223355666666
Q ss_pred HHHHHHhhhcCCC-CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 527 LKLFNEMLCLEPK-SQPDVFTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 527 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
.+.|.+++.++|. ..|+...|........+.|+..+|+.--+...+
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 6666666555442 334444455555555566666666666665553
No 143
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=8.8e-05 Score=66.70 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=88.9
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC
Q 006010 480 HGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN 559 (664)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 559 (664)
.-+.+.+++.+|+..|.+++... +-|.+-|..-..+|.+.|.++.|++-.+.+++.++. -...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~---yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH---YSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH---HHHHHHHHHHHHHccCc
Confidence 34667888999999999998852 335566777888899999999999998888765443 45578888889999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCC
Q 006010 560 ISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQ 597 (664)
Q Consensus 560 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 597 (664)
+++|++.|++.++ +.|+..+|-.-+.........+.
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999887 88998888888888776665544
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=0.00026 Score=68.86 Aligned_cols=121 Identities=17% Similarity=0.144 Sum_probs=59.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006010 372 TLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESG 451 (664)
Q Consensus 372 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 451 (664)
.++..+...++++.|+.+++++.+.. |+ ....++..+...++-.+|.+++.+.++.. +.+...+..-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444444555666666666655542 22 22334445555555555555555555432 334444444444455555
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 006010 452 KGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQM 498 (664)
Q Consensus 452 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (664)
+++.|+++.+++.... |.+..+|..|..+|...|+++.|+..++.+
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 5555555555555433 223335555555555555555555554443
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.97 E-value=0.00029 Score=56.94 Aligned_cols=102 Identities=18% Similarity=0.125 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC----HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHH
Q 006010 474 CYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD----VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNI 549 (664)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 549 (664)
++..++..+...|++++|.+.|..++... |+ ...+..++.++.+.|++++|...|+.++...++.......+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 34456666777888888888888887642 22 3456667788888888888888888886555544334456777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006010 550 LLNALCKQSNISHSIDLLNSMMDRGCDPDL 579 (664)
Q Consensus 550 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 579 (664)
+..++.+.|++++|...++++.+. .|+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 109 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR--YPGS 109 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH--CcCC
Confidence 777888888888888888888873 4443
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.94 E-value=0.0003 Score=56.84 Aligned_cols=99 Identities=15% Similarity=0.135 Sum_probs=76.7
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHH
Q 006010 508 VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL----VTCN 583 (664)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~ 583 (664)
.++..++..+.+.|++++|...|++++...++.......+..+..++.+.|++++|...++++... .|+. ..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHH
Confidence 356677888899999999999999997555443333456677889999999999999999999873 3442 2222
Q ss_pred HHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 584 IFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 584 ~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
.+ +.++.+.|++++|.+.++++.+.
T Consensus 81 ~~---------------------~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 81 KL---------------------GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HH---------------------HHHHHHhCChHHHHHHHHHHHHH
Confidence 22 23388999999999999999986
No 147
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.89 E-value=2.4e-05 Score=46.83 Aligned_cols=33 Identities=39% Similarity=0.954 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006010 546 TYNILLNALCKQSNISHSIDLLNSMMDRGCDPD 578 (664)
Q Consensus 546 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 578 (664)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688899999999999999999999998888887
No 148
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.86 E-value=0.00066 Score=58.97 Aligned_cols=105 Identities=7% Similarity=0.004 Sum_probs=76.3
Q ss_pred HhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010 70 FNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVL--EKSFIFIFKAYGKAHLVEEAIRLFHTMVDE 147 (664)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 147 (664)
+..+...+.-......+..+...+...|++++|...|+++.+..+.+. ...+..++.++.+.|++++|+..+.+.+..
T Consensus 22 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 22 ILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333333333334556788888899999999999999999987644322 457888899999999999999999998765
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 006010 148 FHCKRTVKSFNSVLNVIIQEGLYHRALEF 176 (664)
Q Consensus 148 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 176 (664)
.+.+...+..++..+...|+...+..-
T Consensus 102 --~p~~~~~~~~lg~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 102 --NPKQPSALNNIAVIYHKRGEKAEEAGD 128 (172)
T ss_pred --CcccHHHHHHHHHHHHHcCChHhHhhC
Confidence 344567777888888887775444433
No 149
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.86 E-value=0.042 Score=55.57 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=23.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhC-CCCcCHHhHHHHHHHHHHcCCHHHHHHHH
Q 006010 477 VLIHGLCEDGKLREARMVWTQMLSR-GCKPDVVAYSSMIHGLCNAGSVEEALKLF 530 (664)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 530 (664)
.|.+-....|.++.|++.--.+.+. .+-|....|+.+.-+-+....+..+-+.|
T Consensus 1026 ilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred HHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 3334444455555555443322221 13344555555544444444443333333
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.86 E-value=0.00042 Score=67.84 Aligned_cols=89 Identities=13% Similarity=0.031 Sum_probs=49.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHH
Q 006010 445 KGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVE 524 (664)
Q Consensus 445 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 524 (664)
..+...|++++|++.|+++++.. +.+...|..+..+|...|++++|+..+++++... +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34445556666666666665544 3344455555555556666666666666655532 123445555555556666666
Q ss_pred HHHHHHHHhhh
Q 006010 525 EALKLFNEMLC 535 (664)
Q Consensus 525 ~A~~~~~~~~~ 535 (664)
+|+..|++++.
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 66666666544
No 151
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.84 E-value=0.00097 Score=55.33 Aligned_cols=122 Identities=14% Similarity=0.078 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHH
Q 006010 120 SFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVI 199 (664)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll 199 (664)
-...+.....+.|++.+|...|++.. ......|......+.++....+++..|...++.+-+..+.+-.||. .-.+.
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~Ll~a 167 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HLLFA 167 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hHHHH
Confidence 34445555555556666665555543 2223445555555555555555555565555555554433333432 22344
Q ss_pred HHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006010 200 KTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEA 246 (664)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 246 (664)
..+...|.+.+|+..|+..... -|+...-......+.+.|+.+++
T Consensus 168 R~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHH
Confidence 4555555555555555555544 44444444444444555544443
No 152
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.84 E-value=3.1e-05 Score=46.35 Aligned_cols=33 Identities=42% Similarity=0.824 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 006010 264 TFNVLINGLCKNGELGRAAKLVDNMFLKGCLPN 296 (664)
Q Consensus 264 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~ 296 (664)
+|+.++.+|++.|++++|.++|++|...|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555554444
No 153
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.84 E-value=0.0011 Score=52.44 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CHHHHHHHH
Q 006010 85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRVVL--EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKR-TVKSFNSVL 161 (664)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~ 161 (664)
+.+.....+-..|+.++|..+|++....|.... ..++..+...+...|++++|+.+++.....++..+ +......+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 456677788889999999999999998765433 44677888889999999999999998876533211 223333344
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHH
Q 006010 162 NVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVC 203 (664)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 203 (664)
-++...|+.++|+..+-..+. ++...|..-|..|.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la-------~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA-------ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 567788999999998877655 34445655555554
No 154
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=0.05 Score=55.07 Aligned_cols=151 Identities=13% Similarity=0.138 Sum_probs=70.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 006010 409 IDGLCRVGKPDEAEEILFEMINN----GCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCE 484 (664)
Q Consensus 409 i~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 484 (664)
|..+.+.|.+-.|.+++.+|.+. +.++-..--..++.+. -..+..++++-.+.....|...+... +..
T Consensus 930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~Al-LvE~h~~~ik~~~~~~~~g~~~dat~-------lle 1001 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGAL-LVENHRQTIKELRKIDKHGFLEDATD-------LLE 1001 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhcCcchhhhh-------hhh
Confidence 44456666666666666666542 3222211111111111 12233344444444444442222111 223
Q ss_pred CCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHH
Q 006010 485 DGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSI 564 (664)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 564 (664)
.|-..++-++.+..-. -.....|..|.+--...|.++.|+..--... --..+-|...+|..+.-+-+....+.-.-
T Consensus 1002 s~~l~~~~ri~~n~Wr---gAEAyHFmilAQrql~eg~v~~Al~Tal~L~-DYEd~lpP~eiySllALaaca~raFGtCS 1077 (1189)
T KOG2041|consen 1002 SGLLAEQSRILENTWR---GAEAYHFMILAQRQLFEGRVKDALQTALILS-DYEDFLPPAEIYSLLALAACAVRAFGTCS 1077 (1189)
T ss_pred hhhhhhHHHHHHhhhh---hHHHHHHHHHHHHHHHhchHHHHHHHHhhhc-cHhhcCCHHHHHHHHHHHHhhhhhhhhhH
Confidence 3334444444443322 1234455566666667788888876543331 11245566777777665555555554444
Q ss_pred HHHHHHH
Q 006010 565 DLLNSMM 571 (664)
Q Consensus 565 ~~~~~~~ 571 (664)
+.|-++.
T Consensus 1078 KAfmkLe 1084 (1189)
T KOG2041|consen 1078 KAFMKLE 1084 (1189)
T ss_pred HHHHHHH
Confidence 4444443
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.81 E-value=3.1e-05 Score=57.79 Aligned_cols=49 Identities=27% Similarity=0.482 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 006010 520 AGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNS 569 (664)
Q Consensus 520 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 569 (664)
.|++++|+.+++++++..+. .++...+..+..+|.+.|++++|+.++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-NPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-THHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35566666666666443332 11333344455666666666666666655
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.81 E-value=0.00058 Score=64.36 Aligned_cols=146 Identities=11% Similarity=0.111 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHH
Q 006010 439 TYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHG-LCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGL 517 (664)
Q Consensus 439 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 517 (664)
+|..++....+.+..+.|..+|.++.+.+ ..+...|...... +...++.+.|..+|+..++. ...+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45666666666666777777777776432 2334444444444 22345566677777777664 344556677777777
Q ss_pred HHcCCHHHHHHHHHHhhhcCCCCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 006010 518 CNAGSVEEALKLFNEMLCLEPKSQP-DVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTAL 589 (664)
Q Consensus 518 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 589 (664)
.+.|+.+.|..+|++++.. ..... ....|..++..=.+.|+++.+..+.+++.+ .-|+...+..+...+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHh
Confidence 7777777777777777421 11111 224777777777777777777777777776 344444444444443
No 157
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.79 E-value=0.0068 Score=55.62 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=54.0
Q ss_pred ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHH
Q 006010 82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVL--EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVK 155 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 155 (664)
++..+......+...|+++.|...|+.+....+... ..+...++.++.+.+++++|+..|++.++.++..|++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 445566667777888899999999988887654322 22346778888888999999999988888766666553
No 158
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.77 E-value=0.00047 Score=59.65 Aligned_cols=95 Identities=11% Similarity=0.054 Sum_probs=57.8
Q ss_pred ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHH
Q 006010 82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVV--LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNS 159 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 159 (664)
....|..+...+...|++++|...|+++......+ ...++..+..++...|++++|+..++..+.. .+.....+..
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~ 111 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHH
Confidence 34566666777777777777777777776553222 2346667777777777777777777776553 2333445555
Q ss_pred HHHHHH-------HcCCHhHHHHHHH
Q 006010 160 VLNVII-------QEGLYHRALEFYN 178 (664)
Q Consensus 160 l~~~~~-------~~~~~~~A~~~~~ 178 (664)
+...+. +.|++++|+..++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 555555 5555554443333
No 159
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.77 E-value=4.6e-05 Score=45.19 Aligned_cols=33 Identities=33% Similarity=0.613 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 006010 545 FTYNILLNALCKQSNISHSIDLLNSMMDRGCDP 577 (664)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 577 (664)
.+|+.++.+|.+.|+++.|.++|+.|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
No 160
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.77 E-value=5.4e-05 Score=44.88 Aligned_cols=32 Identities=34% Similarity=0.539 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 006010 264 TFNVLINGLCKNGELGRAAKLVDNMFLKGCLP 295 (664)
Q Consensus 264 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p 295 (664)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44555555555555555555555555444443
No 161
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.011 Score=55.84 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=47.7
Q ss_pred HHcCCChHHHHHHHHHHHhC---CCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHh-HHHHH--HHHHH
Q 006010 482 LCEDGKLREARMVWTQMLSR---GCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVF-TYNIL--LNALC 555 (664)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l--~~~~~ 555 (664)
..+.|++..|.+.|.+.+.. .+.|+...|.....+..+.|+.++|+.--++++++ |.. ++..+ ..++.
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i------D~syikall~ra~c~l 332 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI------DSSYIKALLRRANCHL 332 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc------CHHHHHHHHHHHHHHH
Confidence 45566677777777666643 23344455555556666677777777776666332 222 12222 23344
Q ss_pred HcCChhHHHHHHHHHHH
Q 006010 556 KQSNISHSIDLLNSMMD 572 (664)
Q Consensus 556 ~~g~~~~A~~~~~~~~~ 572 (664)
..++|++|++-+++..+
T Consensus 333 ~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55667777777766665
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.75 E-value=0.0032 Score=51.82 Aligned_cols=93 Identities=9% Similarity=-0.037 Sum_probs=51.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHH
Q 006010 476 SVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALC 555 (664)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 555 (664)
-.+...+...|++++|..+|+-+.... +-+..-|..|..++-..|++++|+..|..+..++++ |+..+-.+..++.
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d---dp~~~~~ag~c~L 114 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID---APQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CchHHHHHHHHHH
Confidence 334444555666666666666555432 122344555555666666666666666666544433 4455555566666
Q ss_pred HcCChhHHHHHHHHHHH
Q 006010 556 KQSNISHSIDLLNSMMD 572 (664)
Q Consensus 556 ~~g~~~~A~~~~~~~~~ 572 (664)
..|+.+.|.+.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665554
No 163
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.74 E-value=0.0093 Score=49.74 Aligned_cols=145 Identities=14% Similarity=0.123 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC-CCCCCHhHH
Q 006010 469 VYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEP-KSQPDVFTY 547 (664)
Q Consensus 469 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 547 (664)
.|+...--.|..++.+.|+..+|...|++...--..-|......+.++....+++..|...+++..+..+ +..|| ..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 3666666667777888888888888888777644455666777777777788888888888887754333 12233 33
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHH
Q 006010 548 NILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVML 627 (664)
Q Consensus 548 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (664)
-.+.+.+...|++.+|...|+...+ .-|+...-...... +.++|+.++|..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~---------------------La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEM---------------------LAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHH---------------------HHHhcchhHHHHHHHHHH
Confidence 4566777788888888888888877 45555443333333 667777776665555554
Q ss_pred HcCCCCChHHHH
Q 006010 628 QKFLSPQTSTWE 639 (664)
Q Consensus 628 ~~~~~~~~~~~~ 639 (664)
+. +..+...|.
T Consensus 221 d~-~~r~~~H~r 231 (251)
T COG4700 221 DT-AKRSRPHYR 231 (251)
T ss_pred HH-HHhcchhHH
Confidence 43 233444443
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00058 Score=52.40 Aligned_cols=94 Identities=20% Similarity=0.234 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHH
Q 006010 475 YSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNAL 554 (664)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 554 (664)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++.+...+. +...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD---NAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---chhHHHHHHHHH
Confidence 3345555666677777777777766542 223355666666777777777777777776433222 334566666677
Q ss_pred HHcCChhHHHHHHHHHHH
Q 006010 555 CKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 555 ~~~g~~~~A~~~~~~~~~ 572 (664)
...|++++|...+.+..+
T Consensus 79 ~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 79 YKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHhHHHHHHHHHHHHc
Confidence 777777777777776654
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.72 E-value=0.00055 Score=52.54 Aligned_cols=93 Identities=18% Similarity=0.196 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Q 006010 86 FYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVII 165 (664)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (664)
+..+...+...|+++.|...++.+.+..+. +...+..++..+...|++++|.+.|...... .+.+...+..++..+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 334444445555555555555555443322 2234444555555555555555555544332 1222334444445555
Q ss_pred HcCCHhHHHHHHHHHH
Q 006010 166 QEGLYHRALEFYNHIV 181 (664)
Q Consensus 166 ~~~~~~~A~~~~~~~~ 181 (664)
..|++++|...++...
T Consensus 80 ~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 80 KLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 5555555555554443
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.71 E-value=0.00098 Score=65.30 Aligned_cols=92 Identities=10% Similarity=-0.075 Sum_probs=63.9
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHc
Q 006010 88 SLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQE 167 (664)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (664)
.....+...|+++.|...|++++..++. +..++..++.+|...|++++|+..++.++.. .+.+...|..++.+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 3455666777777777777777766533 5566777777777777777777777777654 334566677777777777
Q ss_pred CCHhHHHHHHHHHHh
Q 006010 168 GLYHRALEFYNHIVN 182 (664)
Q Consensus 168 ~~~~~A~~~~~~~~~ 182 (664)
|++++|...|+++++
T Consensus 84 g~~~eA~~~~~~al~ 98 (356)
T PLN03088 84 EEYQTAKAALEKGAS 98 (356)
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777777766
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.70 E-value=0.008 Score=56.99 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=73.1
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-----cCHH-hH
Q 006010 443 LMKGFFES-GKGHKAVEIWKDMAKN----NCV-YNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCK-----PDVV-AY 510 (664)
Q Consensus 443 l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~-~~ 510 (664)
+...|... |++++|++.|++..+. +.+ .-..++..+...+.+.|++++|.++|+++...... .+.. .+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 33445555 6777777777765542 200 01234556777788889999999999888764322 2222 23
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCH--hHHHHHHHHHHHcCC---hhHHHHHHHHHH
Q 006010 511 SSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDV--FTYNILLNALCKQSN---ISHSIDLLNSMM 571 (664)
Q Consensus 511 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~---~~~A~~~~~~~~ 571 (664)
...+-++...|+.-.|.+.+++.....++...+. .....|+.++- .|+ +++|+.-|+.+.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCCHHHHHHHHHHHcccC
Confidence 3445566778899999999998865555554442 34555666654 344 445555555543
No 168
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.69 E-value=0.00099 Score=54.71 Aligned_cols=94 Identities=10% Similarity=-0.012 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q 006010 121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIK 200 (664)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~ 200 (664)
...+...+...|++++|.++|+.+... .+.+..-|..|..++-..|++++|+..|...... . +.|...+-.+..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L---~-~ddp~~~~~ag~ 111 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI---K-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---C-CCCchHHHHHHH
Confidence 334444444555555555555544332 2333444555555555555555555555555442 1 123334444444
Q ss_pred HHHhcCChhHHHHHHhhccc
Q 006010 201 TVCRLGLVDNAIQLFREMPV 220 (664)
Q Consensus 201 ~~~~~g~~~~A~~~~~~~~~ 220 (664)
++...|+.+.|++.|+..+.
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555554443
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.68 E-value=0.011 Score=54.35 Aligned_cols=186 Identities=11% Similarity=0.038 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006010 366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVY---SALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSS 442 (664)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 442 (664)
+....-.....+.+.|++++|++.|+++...-..+ .... -.++.++.+.+++++|...+++.++.........+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 33334445555667788888888888887753322 2221 3455667778888888888888777632212222222
Q ss_pred HHHHHHh--cC---------------C---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 006010 443 LMKGFFE--SG---------------K---GHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG 502 (664)
Q Consensus 443 l~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (664)
.+.+.+. .+ + ..+|.+.|+.+++. |=...-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH-
Confidence 2222221 11 1 12233333333332 22222334444333333221
Q ss_pred CCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010 503 CKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMM 571 (664)
Q Consensus 503 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 571 (664)
.- ..-..+...|.+.|.+..|..-++.++..-|+..........++.+|...|..++|.++...+.
T Consensus 174 --la-~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --LA-KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --HH-HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 00 1112556778899999999999999987667776677778888899999999999988777654
No 170
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.67 E-value=0.001 Score=65.10 Aligned_cols=120 Identities=20% Similarity=0.209 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcccC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 006010 191 NTLTFNLVIKTVCRLGLVDNAIQLFREMPVR--NCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVL 268 (664)
Q Consensus 191 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 268 (664)
+......++..+....+.+.+..++-..... ....-..+..++++.|.+.|..++++.+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4445555566666666677777776666543 11122344567888888888888888888887778888888888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006010 269 INGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLK 310 (664)
Q Consensus 269 i~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 310 (664)
++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888777666555666666666655554
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.65 E-value=0.004 Score=59.04 Aligned_cols=113 Identities=13% Similarity=0.137 Sum_probs=54.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHc----CCCCC--HHHHHHHHH
Q 006010 233 LMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKN-GELGRAAKLVDNMFLK----GCLPN--EVTYNTLIH 305 (664)
Q Consensus 233 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~----g~~p~--~~~~~~l~~ 305 (664)
.+..|...|++..|-+++.++- ..|... |++++|.+.|++.... | .+. ..++..+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 3444555555555554444433 344444 6666666666665332 2 111 234455566
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-----hh-hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010 306 GLCLKGNLDKAVSLLDRMVASKCMPN-----EV-TYGTIINGLVKLGRAVDGARVLMSMEER 361 (664)
Q Consensus 306 ~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 361 (664)
.+.+.|++++|.++|+++.......+ .. .+...+-++...|+...|.+.+++....
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66777777777777777665422111 11 1222233445566666666666666544
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.65 E-value=0.0024 Score=55.41 Aligned_cols=85 Identities=13% Similarity=0.053 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHH
Q 006010 156 SFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILP-NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLM 234 (664)
Q Consensus 156 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 234 (664)
.+..++..+...|++++|...|+++.+..+. .+ ....+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEED--PNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 3444444444444555555544444431100 00 01234444444444555555555554444432 22333344444
Q ss_pred HHHHhcCCh
Q 006010 235 DGLCKENRL 243 (664)
Q Consensus 235 ~~~~~~g~~ 243 (664)
..+...|+.
T Consensus 114 ~~~~~~g~~ 122 (172)
T PRK02603 114 VIYHKRGEK 122 (172)
T ss_pred HHHHHcCCh
Confidence 444444443
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.64 E-value=0.00011 Score=54.76 Aligned_cols=79 Identities=13% Similarity=0.147 Sum_probs=32.4
Q ss_pred CCcchHHHHHHHHHhCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 006010 97 GDFKSLEMVLYRMRREKRV-VLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALE 175 (664)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 175 (664)
|+++.|..+++.+....+. ++...+..++.+|.+.|++++|+++++. .+. .+.+......++.++.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4444555555555444321 1222333345555555555555555544 111 01112233333444555555555555
Q ss_pred HHH
Q 006010 176 FYN 178 (664)
Q Consensus 176 ~~~ 178 (664)
.++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.64 E-value=0.00065 Score=58.78 Aligned_cols=104 Identities=11% Similarity=0.047 Sum_probs=65.6
Q ss_pred HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHH
Q 006010 507 VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT-CNIF 585 (664)
Q Consensus 507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l 585 (664)
...|..++..+...|++++|...|++++...++......+|..+...+...|++++|+..+++... +.|+... +..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHH
Confidence 345667777777888888888888888644332211234677888888888999999998888886 4454332 2222
Q ss_pred HHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHH
Q 006010 586 LTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVM 626 (664)
Q Consensus 586 l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (664)
... +..++..+...|++++|...+++.
T Consensus 113 a~i--------------~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVI--------------CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHH--------------HHHhhHHHHHcccHHHHHHHHHHH
Confidence 222 112233344778877665555543
No 175
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.62 E-value=0.0013 Score=49.89 Aligned_cols=76 Identities=16% Similarity=0.329 Sum_probs=41.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006010 232 TLMDGLCKENRLDEAVLLLDEMQVDGC-FPTPVTFNVLINGLCKNG--------ELGRAAKLVDNMFLKGCLPNEVTYNT 302 (664)
Q Consensus 232 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~g~~p~~~~~~~ 302 (664)
..|..+...+++.....+|+.++..|+ .|+..+|+.++...++.. +.-..+.+++.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555666666666666666666 566666666666554432 12234445555555555555555555
Q ss_pred HHHHH
Q 006010 303 LIHGL 307 (664)
Q Consensus 303 l~~~~ 307 (664)
++..+
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 55444
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0033 Score=57.29 Aligned_cols=121 Identities=13% Similarity=0.169 Sum_probs=83.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcC---CHHHHHHHHHHhhhcC
Q 006010 461 KDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAG---SVEEALKLFNEMLCLE 537 (664)
Q Consensus 461 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 537 (664)
+.-...+ |.|...|-.|...|...|+.+.|..-|....+.. .++...+..+..++.... ...++..+|++++..+
T Consensus 146 e~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 146 ETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred HHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence 3333334 5677788888888888888888888888877652 345566666666654332 3667888888887666
Q ss_pred CCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010 538 PKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA 588 (664)
Q Consensus 538 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 588 (664)
+. |......|...+...|++.+|...|+.|.+ ..|....+..++..
T Consensus 224 ~~---~iral~lLA~~afe~g~~~~A~~~Wq~lL~--~lp~~~~rr~~ie~ 269 (287)
T COG4235 224 PA---NIRALSLLAFAAFEQGDYAEAAAAWQMLLD--LLPADDPRRSLIER 269 (287)
T ss_pred Cc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCCCchHHHHHH
Confidence 55 666677777788888888888888888887 34444444444443
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.00079 Score=60.75 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=60.9
Q ss_pred HHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCH
Q 006010 91 QHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLY 170 (664)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (664)
.-+.+.++|.+|...|..++...+ .+...|..-+.+|.+.|.++.|++-.+..+.. .+....+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 345556666666666666666553 35555666666666677776666666665543 233455666666666666677
Q ss_pred hHHHHHHHHHHhcccCCCCcCHHHHHH
Q 006010 171 HRALEFYNHIVNAKHMNILPNTLTFNL 197 (664)
Q Consensus 171 ~~A~~~~~~~~~~~~~~~~~~~~~~~~ 197 (664)
++|++.|.+.++ +.|+..+|-.
T Consensus 166 ~~A~~aykKaLe-----ldP~Ne~~K~ 187 (304)
T KOG0553|consen 166 EEAIEAYKKALE-----LDPDNESYKS 187 (304)
T ss_pred HHHHHHHHhhhc-----cCCCcHHHHH
Confidence 776666666655 5555555543
No 178
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.60 E-value=0.076 Score=51.18 Aligned_cols=462 Identities=14% Similarity=0.136 Sum_probs=235.5
Q ss_pred HHHhCCCcchHHHHHHHHHhCCCC----cCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHH
Q 006010 92 HYANSGDFKSLEMVLYRMRREKRV----VLEKS-FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQ 166 (664)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (664)
.+-+.+++.++..+|.++.+.... ...+. -..++.+|.. ++.+.-........+..|..+-...+ ..-...+
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF--~~L~~Y~ 91 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLF--KALVAYK 91 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHH--HHHHHHH
Confidence 456788999999999988865322 11122 2355666643 34444444444443332322222222 2223457
Q ss_pred cCCHhHHHHHHHHHHhcccCCCC-----------cCHHHHHHHHHHHHhcCChhHHHHHHhhcccC----CCCCCHHHHH
Q 006010 167 EGLYHRALEFYNHIVNAKHMNIL-----------PNTLTFNLVIKTVCRLGLVDNAIQLFREMPVR----NCEPDIYTYC 231 (664)
Q Consensus 167 ~~~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~ 231 (664)
.+.+.+|.+.+....+.....-. +|-..=+..+..+...|++.+++.+++++..+ ...-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78899999888776542101000 11122245566777888888888888877543 2235677777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006010 232 TLMDGLCKENRLDEAVLLLDEMQV---DGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLC 308 (664)
Q Consensus 232 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~ 308 (664)
.++-.+.+. .|-++.+ ..+-|+ |..++..|.+.=. .++.-.-..+.|.......++....
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHH
Confidence 765555432 2333322 112222 3334444433211 1111000112333333333433332
Q ss_pred hc--CChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcC
Q 006010 309 LK--GNLDKAVSLLDRMVASKCMPNEVT-YGTIINGLVKLGRAVDGARVLMSMEERKFH----VNEYIYSTLISGLFKEG 381 (664)
Q Consensus 309 ~~--g~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~ 381 (664)
-. .+..--.++++.....-+.|+... ...+...+.. +.+++..+.+.+...... --..++..++....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 122223333333333334444322 2233333332 444444444443322111 02346777777788888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHh-c---CChhHHHHHHHHHHHCCCCCCHHHHHHHH---HHH
Q 006010 382 KAEDAMKLWKQMMEKGCKPNTVVYS-------ALIDGLCR-V---GKPDEAEEILFEMINNGCAANAFTYSSLM---KGF 447 (664)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~~~~-~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~ 447 (664)
+...|.+.+.-+.... |+...-. .+-+..+. . .+...-+.+++.....++. ......-|+ .-+
T Consensus 313 ~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 313 QTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHL 389 (549)
T ss_pred hHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHH
Confidence 8888888887766542 3322111 12222221 1 1222333344444443221 111222222 234
Q ss_pred HhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHc---CCChHHHHHHHHHHHhCCCCcC----HHhHHHHHH
Q 006010 448 FESGK-GHKAVEIWKDMAKNNCVYNEVCYSVLIH----GLCE---DGKLREARMVWTQMLSRGCKPD----VVAYSSMIH 515 (664)
Q Consensus 448 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~ 515 (664)
-+.|. -++|+++++.+.+-. +.|..+-|.+.. +|.. ...+.+-..+-+-+.+.|+.|- ...-|.+.+
T Consensus 390 W~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 45555 888999999888754 345544443322 2221 2234444444445556677663 334455554
Q ss_pred H--HHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010 516 G--LCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA 588 (664)
Q Consensus 516 ~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 588 (664)
+ +...|++.++.-.-.-.. .+.|++.+|..++-++....++++|..+++. ++|+..+++.-+..
T Consensus 469 AEyLysqgey~kc~~ys~WL~----~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~dskvqK 534 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLT----KIAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDSKVQK 534 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHH----HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHHHHHH
Confidence 4 457899999877655543 2678999999999999999999999999987 46777776655543
No 179
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.58 E-value=0.0013 Score=64.31 Aligned_cols=120 Identities=13% Similarity=0.184 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH
Q 006010 259 FPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK--GCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYG 336 (664)
Q Consensus 259 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 336 (664)
+.+......+++.+....+++.+..++.+.... ....-..|..++++.|.+.|..+.++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345555555555555555556666665555443 111112234456666666666666666666655566666666666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006010 337 TIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLF 378 (664)
Q Consensus 337 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (664)
.+++.+.+.|++..|.++...|..++...+..++..-+.+|.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 666666666666666666665555544444444443333333
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.58 E-value=0.0083 Score=61.55 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=47.5
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010 506 DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTC 582 (664)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 582 (664)
+...|..+.......|++++|...+++++.++ |+...|..+...+...|+.++|.+.++++.. +.|...||
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~----ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE----MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence 34556666555556677777777777775432 4556677777777777777777777777776 55655553
No 181
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.58 E-value=0.0012 Score=62.12 Aligned_cols=128 Identities=11% Similarity=0.083 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHH-cCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHH
Q 006010 121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQ-EGLYHRALEFYNHIVNAKHMNILPNTLTFNLVI 199 (664)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll 199 (664)
|..+++..-+.+..+.|..+|.+..+... .+...|...+..-.. .++.+.|.++|+..++. +..+...|...+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~----f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK----FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH----HTT-HHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----CCCCHHHHHHHH
Confidence 44444444444444444444444432211 122223222222222 23333345555444431 223334444444
Q ss_pred HHHHhcCChhHHHHHHhhcccCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006010 200 KTVCRLGLVDNAIQLFREMPVRNCEPD---IYTYCTLMDGLCKENRLDEAVLLLDEMQV 255 (664)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 255 (664)
..+.+.|+.+.|+.+|+..... +.++ ...|...+..=.+.|+.+.+.++.+++.+
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444445555555555544433 1111 12455555555555555555555555544
No 182
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.56 E-value=0.013 Score=52.42 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHhCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010 84 STFYSLIQHYANSGDFKSLEMVLYRMRREKR--VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE 147 (664)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 147 (664)
..+......+...|++..|...|+.+....+ +....+...++.++.+.|++++|+..|+.+++.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444444445555555555555555544321 222334444455555555555555555554444
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.55 E-value=0.00038 Score=48.83 Aligned_cols=57 Identities=18% Similarity=0.362 Sum_probs=34.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 513 MIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
+...+...|++++|+..|++++...|+ +...|..+..++...|++++|...|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666666666666543322 455666666666666666666666666665
No 184
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.52 E-value=0.099 Score=50.42 Aligned_cols=201 Identities=18% Similarity=0.201 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHc----CCChHHHHHHHHHHHhCCCCcC
Q 006010 438 FTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCY-------SVLIHGLCE----DGKLREARMVWTQMLSRGCKPD 506 (664)
Q Consensus 438 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~ 506 (664)
.++..++....+.++...|.+.+.-+...+ |+...- ..+-+..+. .-+...-+.+|+.....++.--
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH
Confidence 455666666677777777777776665543 332211 112222221 1133445666777666533211
Q ss_pred H-HhH-HHHHHHHHHcCC-HHHHHHHHHHhhhcCCCCCCCHhHHHHHH----HHHHH---cCChhHHHHHHHHHHHCCCC
Q 006010 507 V-VAY-SSMIHGLCNAGS-VEEALKLFNEMLCLEPKSQPDVFTYNILL----NALCK---QSNISHSIDLLNSMMDRGCD 576 (664)
Q Consensus 507 ~-~~~-~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~ 576 (664)
. +.| ..-+.-+.+.|. -++|+++++.++.-.+. |...-|.+. .+|.+ ...+.+-+.+-+-+.+.|+.
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~y---D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNY---DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 1 111 122233455565 88899999888542221 433333322 12221 22333444444444566777
Q ss_pred CCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHH
Q 006010 577 PDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAIN 656 (664)
Q Consensus 577 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 656 (664)
|-.+.=..+.+.+.+ .+| +..+|++.++.-+-.-+.+ +.|++.+++-++-++.-..+++||..
T Consensus 454 ~i~i~e~eian~LaD--------AEy-------Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~ 516 (549)
T PF07079_consen 454 PITISEEEIANFLAD--------AEY-------LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWE 516 (549)
T ss_pred cccccHHHHHHHHHH--------HHH-------HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 754332222222111 122 7789999998866666555 79999999999999999999999998
Q ss_pred HHHh
Q 006010 657 KCWS 660 (664)
Q Consensus 657 ~~~~ 660 (664)
++.+
T Consensus 517 ~l~~ 520 (549)
T PF07079_consen 517 YLQK 520 (549)
T ss_pred HHHh
Confidence 7764
No 185
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.52 E-value=0.0097 Score=53.15 Aligned_cols=182 Identities=15% Similarity=0.083 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHH
Q 006010 117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT-VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTF 195 (664)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 195 (664)
+...+...+..+...|++++|++.|+.+...++..+- ..+...++.++.+.|+++.|...++...+..|.+-.-+...|
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 4556777788888999999999999999887655443 457778899999999999999999999885444321122222
Q ss_pred HHHHHHHHhc----------CChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 006010 196 NLVIKTVCRL----------GLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTF 265 (664)
Q Consensus 196 ~~ll~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 265 (664)
..-+..+... +...+|...| ..++.-|=...-..+|...+..+... .-..-
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~---------------~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e- 144 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEF---------------EELIKRYPNSEYAEEAKKRLAELRNR---LAEHE- 144 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHH---------------HHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHH-
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHH---------------HHHHHHCcCchHHHHHHHHHHHHHHH---HHHHH-
Confidence 2222222111 1122333334 44444444445555665555554432 11111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHH
Q 006010 266 NVLINGLCKNGELGRAAKLVDNMFLKGC--LPNEVTYNTLIHGLCLKGNLDKAV 317 (664)
Q Consensus 266 ~~li~~~~~~g~~~~a~~~~~~~~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~ 317 (664)
-.+...|.+.|.+..|..-++.+.+.=. .........++.+|.+.|..+.+.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 2356778889999999988888887621 112245677788888888877544
No 186
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.52 E-value=0.00043 Score=49.29 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=37.0
Q ss_pred HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC-ChhHHHHHHHHHHH
Q 006010 507 VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS-NISHSIDLLNSMMD 572 (664)
Q Consensus 507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 572 (664)
..+|..++..+...|++++|+..|++++..++. +...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345555666666666666666666666554433 4455556666666666 46666666666554
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.49 E-value=0.00041 Score=49.25 Aligned_cols=61 Identities=23% Similarity=0.350 Sum_probs=34.3
Q ss_pred HcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006010 519 NAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNI 584 (664)
Q Consensus 519 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 584 (664)
..|++++|+++|++++...|+ +...+..+..+|.+.|++++|.++++++.. ..|+...+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD---NPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHH
Confidence 456666666666666554444 555555566666666666666666666665 3455444433
No 188
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.48 E-value=0.0018 Score=49.20 Aligned_cols=78 Identities=22% Similarity=0.403 Sum_probs=57.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCChhhHHH
Q 006010 267 VLINGLCKNGELGRAAKLVDNMFLKGC-LPNEVTYNTLIHGLCLKG--------NLDKAVSLLDRMVASKCMPNEVTYGT 337 (664)
Q Consensus 267 ~li~~~~~~g~~~~a~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 337 (664)
..|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555666888888888888888888 888888888888776533 23356677777777777888888877
Q ss_pred HHHHHHh
Q 006010 338 IINGLVK 344 (664)
Q Consensus 338 ll~~~~~ 344 (664)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7776654
No 189
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0056 Score=55.83 Aligned_cols=121 Identities=16% Similarity=0.178 Sum_probs=91.9
Q ss_pred HHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC---ChhHHHHHHHHHH
Q 006010 495 WTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS---NISHSIDLLNSMM 571 (664)
Q Consensus 495 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 571 (664)
++.-+..+ +-|...|..|..+|...|+++.|..-|.++.++.++ |...+..+..++..+. ...++..++++++
T Consensus 145 Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~---n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 145 LETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD---NPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 34334432 446789999999999999999999999999876554 7777888887765443 4668999999999
Q ss_pred HCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHH
Q 006010 572 DRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQ 643 (664)
Q Consensus 572 ~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 643 (664)
. ..|+..+-..++..- +...|++++|...|+.|.+. -|...-|..+++
T Consensus 221 ~--~D~~~iral~lLA~~--------------------afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 221 A--LDPANIRALSLLAFA--------------------AFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred h--cCCccHHHHHHHHHH--------------------HHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 8 688877766666552 89999999999999999985 333334444443
No 190
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.46 E-value=0.00016 Score=41.75 Aligned_cols=28 Identities=39% Similarity=0.705 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010 264 TFNVLINGLCKNGELGRAAKLVDNMFLK 291 (664)
Q Consensus 264 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (664)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444433
No 191
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.45 E-value=0.00017 Score=41.61 Aligned_cols=29 Identities=31% Similarity=0.762 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006010 546 TYNILLNALCKQSNISHSIDLLNSMMDRG 574 (664)
Q Consensus 546 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 574 (664)
+|+.++++|++.|++++|.+++++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777655
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.45 E-value=0.0048 Score=48.88 Aligned_cols=93 Identities=22% Similarity=0.190 Sum_probs=52.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCcC--HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHH
Q 006010 479 IHGLCEDGKLREARMVWTQMLSRGCKPD--VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCK 556 (664)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 556 (664)
..++-..|+.++|+.+|++.+..|+... ...+..+...+...|++++|..++++.+...|+..-+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 4455566677777777777766665443 23455566666677777777777776643222211122222223345566
Q ss_pred cCChhHHHHHHHHHH
Q 006010 557 QSNISHSIDLLNSMM 571 (664)
Q Consensus 557 ~g~~~~A~~~~~~~~ 571 (664)
.|+.++|++.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 677777776665544
No 193
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.42 E-value=0.0025 Score=58.86 Aligned_cols=103 Identities=14% Similarity=0.125 Sum_probs=76.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCH----HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHH
Q 006010 474 CYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDV----VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNI 549 (664)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 549 (664)
.|...+..+.+.|++++|...|+.++.. .|+. .++..++.+|...|++++|...|+.++...++.......+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4555555556678888888888888875 3442 467778888888999999999999887656655555666666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006010 550 LLNALCKQSNISHSIDLLNSMMDRGCDPDLV 580 (664)
Q Consensus 550 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 580 (664)
++..+...|+.++|...|++.++ ..|+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~--~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIK--KYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 77778888999999999998887 456554
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.41 E-value=0.00078 Score=47.22 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=34.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010 124 IFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 182 (664)
++..+...|++++|++.|+.+++. .+.+...+..++.++...|++++|...|+.+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666666666554 233556666666666666666666666666655
No 195
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.39 E-value=0.0061 Score=62.54 Aligned_cols=146 Identities=10% Similarity=-0.027 Sum_probs=95.2
Q ss_pred CCCCcCHHHHHHHHHHHHh--c---CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHc--------CCHhHHHHHHH
Q 006010 112 EKRVVLEKSFIFIFKAYGK--A---HLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQE--------GLYHRALEFYN 178 (664)
Q Consensus 112 ~~~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~ 178 (664)
...+.+..+|...+++... . +..+.|+.+|++.++. .|.....|..+..++... .+...+.+..+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3445567777766666433 2 3377888898888775 333445555444433322 12345555555
Q ss_pred HHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006010 179 HIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGC 258 (664)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 258 (664)
+..... ....+...|..+.......|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....+
T Consensus 409 ~a~al~--~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~- 483 (517)
T PRK10153 409 NIVALP--ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR- 483 (517)
T ss_pred Hhhhcc--cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 543310 122344567766666667899999999999988875 578889999999999999999999999887753
Q ss_pred CCCHHHH
Q 006010 259 FPTPVTF 265 (664)
Q Consensus 259 ~~~~~~~ 265 (664)
|...+|
T Consensus 484 -P~~pt~ 489 (517)
T PRK10153 484 -PGENTL 489 (517)
T ss_pred -CCCchH
Confidence 444444
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.37 E-value=0.00089 Score=47.48 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=23.2
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010 130 KAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 130 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 182 (664)
..|++++|++.|+.+... .+.+...+..++.+|.+.|++++|..+++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555444433 223444444444455555555555555544443
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.31 E-value=0.0087 Score=55.33 Aligned_cols=98 Identities=8% Similarity=0.117 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC-CCHHHHHHHH
Q 006010 85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRVV--LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCK-RTVKSFNSVL 161 (664)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~ 161 (664)
.|........+.|+++.|...|+.+++..+.. ...++..++..|...|++++|+..|..++..++.. ....++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 33333444456688888888888888765432 24677788888888888888888888887653332 2345666667
Q ss_pred HHHHHcCCHhHHHHHHHHHHh
Q 006010 162 NVIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~ 182 (664)
..+...|+.++|...|+.+.+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777778888888888888776
No 198
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.28 E-value=0.0056 Score=52.90 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=31.3
Q ss_pred cCHHHHHHHHHHHHh-----cCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHh
Q 006010 190 PNTLTFNLVIKTVCR-----LGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK 239 (664)
Q Consensus 190 ~~~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (664)
.+..+|..++..|.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 355566666666653 25555556666677777777777777777766543
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.20 E-value=0.0018 Score=46.04 Aligned_cols=62 Identities=16% Similarity=0.241 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHh
Q 006010 119 KSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEG-LYHRALEFYNHIVN 182 (664)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~ 182 (664)
..|..++..+...|++++|+..|.+.++. .+.++..|..+..++.+.| ++++|++.+++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34555555555666666666666655543 2334555555566666665 45666666655544
No 200
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.18 E-value=0.0073 Score=56.90 Aligned_cols=131 Identities=17% Similarity=0.034 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCC-CCCHH
Q 006010 404 VYSALIDGLCRVGKPDEAEEILFEMIN----NGCA-ANAFTYSSLMKGFFESGKGHKAVEIWKDMAK----NNC-VYNEV 473 (664)
Q Consensus 404 ~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~ 473 (664)
.|..|...|.-.|+++.|+...+.-+. -|-. .....+..+.+++.-.|+++.|.+.|+.... .+- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 444555556667788888766554322 2211 1234566777788888888888887776433 221 12233
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhC-----CCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhh
Q 006010 474 CYSVLIHGLCEDGKLREARMVWTQMLSR-----GCKPDVVAYSSMIHGLCNAGSVEEALKLFNEML 534 (664)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (664)
+.-+|...|.-..++++|+.++.+-+.. ...-...++.+|..+|...|..++|+.+.+..+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4455777777777788888777654321 112234677788888888888888888777664
No 201
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.18 E-value=0.01 Score=51.42 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 006010 224 EPDIYTYCTLMDGLCK-----ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEV 298 (664)
Q Consensus 224 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~ 298 (664)
..+-.+|..+++.|.+ .|..+=....+..|.+-|+..|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 3467788888888775 35566677778888889999999999999988654 3221 01111111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 006010 299 TYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLG 346 (664)
Q Consensus 299 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 346 (664)
...| -.+-+-|++++++|...|+.||..++..+++.+.+.+
T Consensus 112 -----F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 112 -----FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred -----hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 0001 1223445666666666666666666666666654443
No 202
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.15 E-value=0.35 Score=48.78 Aligned_cols=137 Identities=12% Similarity=0.063 Sum_probs=100.9
Q ss_pred CChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 006010 81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSV 160 (664)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 160 (664)
.+...|..++.---.....+.++.++..++..- |..-..|...+..-.+.|..+.+.++|++-+.. .+.++..|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHH
Confidence 344567666665555555677888888888644 445557778888888999999999999998765 66777888777
Q ss_pred HHHHH-HcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccC
Q 006010 161 LNVII-QEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVR 221 (664)
Q Consensus 161 ~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 221 (664)
...+. ..|+.+.....|+.+...-+..+ .....|...+..-...+++.....+++.+++.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF-~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDF-LSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccch-hccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 66555 45788888889999877433322 23456777888888889999999999998865
No 203
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.45 Score=49.82 Aligned_cols=184 Identities=11% Similarity=0.091 Sum_probs=103.3
Q ss_pred ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 006010 82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVL 161 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 161 (664)
........+..+.+...++-|..+-..-.. +...........+..+.+.|++++|...|-+-+.. ..| ..++
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~Vi 404 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----SEVI 404 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----HHHH
Confidence 334455566666666667666655433221 11222334555556666778888888777665432 222 2345
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcC
Q 006010 162 NVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKEN 241 (664)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 241 (664)
.-+....+..+-..+++.+.+ .|+. +...-..|+.+|.+.++.+.-.++.+... .|.. ..-....+..+.+.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~---~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHK---KGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHH---cccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 555555555666666666666 4442 23334567778888888877777776655 3311 112344556666666
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010 242 RLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM 288 (664)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (664)
-.++|.-+-..... .......++ -..|++++|++.+..+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 66666665554432 233333333 3457788888777765
No 204
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.12 E-value=0.17 Score=45.33 Aligned_cols=74 Identities=11% Similarity=0.089 Sum_probs=56.8
Q ss_pred ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHH
Q 006010 82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKR--VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVK 155 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 155 (664)
.+..+..-+....+.|++++|...|+.+.++.+ +....+...++-++.+.+++++|+..+++.+..++..|++.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 345666677777888889999888888887643 44566777888888888889988888888888777777753
No 205
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.44 Score=49.25 Aligned_cols=346 Identities=11% Similarity=0.114 Sum_probs=185.7
Q ss_pred CCCCcCHHHHH-----HHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCh--hHHHHHH-HHHHhCC
Q 006010 186 MNILPNTLTFN-----LVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRL--DEAVLLL-DEMQVDG 257 (664)
Q Consensus 186 ~~~~~~~~~~~-----~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~-~~~~~~~ 257 (664)
.|++.+..-|. .++.-+...+.+..|+++-..+...-..- ...|.....-+.+..+. +++++.. +++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 45555544443 35666667788888888887775332121 46677777777665332 2233333 333221
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 006010 258 CFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCL----PNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEV 333 (664)
Q Consensus 258 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 333 (664)
. .....|..+..-....|+.+-|..+++.=...+.. .+..-+...+.-+.+.|+.+-...++-.+..+ .+..
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s 579 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRS 579 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHH
Confidence 2 23456777777777888888888877642111100 01112334444455566666666665555543 1111
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH--HHHHHc-CCCCCHHHHHHHHH
Q 006010 334 TYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLW--KQMMEK-GCKPNTVVYSALID 410 (664)
Q Consensus 334 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~--~~~~~~-~~~~~~~~~~~li~ 410 (664)
.+.. ...+...|..++.+..++. +.. .+-+.|....+. +++..| +..... -+.+-.........
T Consensus 580 ~l~~------~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~ 646 (829)
T KOG2280|consen 580 SLFM------TLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAAN 646 (829)
T ss_pred HHHH------HHHhchhhhHHHHHHHHhh---chh---hhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHH
Confidence 1111 1223444555555544321 111 111122222222 222111 111000 01112222333344
Q ss_pred HHHhcCChhHHHH----------HHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010 411 GLCRVGKPDEAEE----------ILFEMIN-NGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLI 479 (664)
Q Consensus 411 ~~~~~~~~~~a~~----------~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 479 (664)
++.+.....-..+ +.+.+.. .+......+.+--+..+...|+..+|.++-.+.. .||-..|-.-+
T Consensus 647 ~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~ 722 (829)
T KOG2280|consen 647 AFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKL 722 (829)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHH
Confidence 4444433221111 1112211 1222233344555666777899999998877765 48888888889
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC
Q 006010 480 HGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN 559 (664)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 559 (664)
.+++..+++++-.++-+... .+.-|.-...+|.+.|+.++|.+++.+. ++ +.-...+|.+.|+
T Consensus 723 ~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv----~~-------l~ekv~ay~~~~~ 785 (829)
T KOG2280|consen 723 TALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV----GG-------LQEKVKAYLRVGD 785 (829)
T ss_pred HHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc----CC-------hHHHHHHHHHhcc
Confidence 99999999998877665543 2446777888999999999999999876 11 1156788899999
Q ss_pred hhHHHHHHHHHH
Q 006010 560 ISHSIDLLNSMM 571 (664)
Q Consensus 560 ~~~A~~~~~~~~ 571 (664)
+.+|.++--+-.
T Consensus 786 ~~eAad~A~~~r 797 (829)
T KOG2280|consen 786 VKEAADLAAEHR 797 (829)
T ss_pred HHHHHHHHHHhc
Confidence 999988665543
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.06 E-value=0.006 Score=57.45 Aligned_cols=286 Identities=16% Similarity=0.100 Sum_probs=157.9
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHH--HC--CCC-CChhhHHHHHHH
Q 006010 271 GLCKNGELGRAAKLVDNMFLKGCLPNE----VTYNTLIHGLCLKGNLDKAVSLLDRMV--AS--KCM-PNEVTYGTIING 341 (664)
Q Consensus 271 ~~~~~g~~~~a~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~--~~~-~~~~~~~~ll~~ 341 (664)
-+|+.|+......+|+..++.|-. |. .+|..|..+|.-.+++++|+++...=+ .. |-+ -.......+.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 478889999999999998887743 33 346666777777788888887643211 10 100 012223334444
Q ss_pred HHhcCChhHHHHHHHH----HHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006010 342 LVKLGRAVDGARVLMS----MEERKFHV-NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVG 416 (664)
Q Consensus 342 ~~~~~~~~~a~~~~~~----~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 416 (664)
+-..|.+++|.-...+ ..+.|-.. ....+..+...|...|+.-.... -.+.|-.++.++ .
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~-----------~ 169 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT-----------S 169 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-----------H
Confidence 4445666666543332 22222111 12233334444443332110000 000011111110 0
Q ss_pred ChhHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHcCC
Q 006010 417 KPDEAEEILFEMIN----NGC-AANAFTYSSLMKGFFESGKGHKAVEIWKDMAK----NNCV-YNEVCYSVLIHGLCEDG 486 (664)
Q Consensus 417 ~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g 486 (664)
.++.|.++|.+-++ .|- -.--..|..|.+.|.-.|+++.|+...+.-.. .|-. .....+..+..++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 12334444433222 110 01123556666777778899999877654322 2211 12346777889999999
Q ss_pred ChHHHHHHHHHHHh----CCC-CcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC---CCCCCHhHHHHHHHHHHHcC
Q 006010 487 KLREARMVWTQMLS----RGC-KPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEP---KSQPDVFTYNILLNALCKQS 558 (664)
Q Consensus 487 ~~~~A~~~~~~~~~----~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g 558 (664)
+++.|.+.|+.... .|- .....+..+|.+.|.-..++++|+.++.+-+.+.. ...-....+-.|..+|...|
T Consensus 250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 99999998886543 221 22345667788888888899999999876543221 11113456778899999999
Q ss_pred ChhHHHHHHHHHHH
Q 006010 559 NISHSIDLLNSMMD 572 (664)
Q Consensus 559 ~~~~A~~~~~~~~~ 572 (664)
..++|+.+.+...+
T Consensus 330 ~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 330 EHRKALYFAELHLR 343 (639)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999888776653
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.05 E-value=0.069 Score=53.63 Aligned_cols=85 Identities=19% Similarity=0.156 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHH-
Q 006010 436 NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMI- 514 (664)
Q Consensus 436 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~- 514 (664)
+..+...+...+.+...+.-|-++|..|-+. ..+++.....++|++|..+-+...+. .||+ |....
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dV--y~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDV--YMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccc--cchHHH
Confidence 3344444444555556666666777665432 23556666777777777776665442 3332 22222
Q ss_pred ------------HHHHHcCCHHHHHHHHHHh
Q 006010 515 ------------HGLCNAGSVEEALKLFNEM 533 (664)
Q Consensus 515 ------------~~~~~~g~~~~A~~~~~~~ 533 (664)
.+|.++|+-.+|.+++++.
T Consensus 813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred HhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 3445556666666666555
No 208
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.05 E-value=0.3 Score=46.26 Aligned_cols=60 Identities=15% Similarity=0.026 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHH
Q 006010 404 VYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFE-SGKGHKAVEIWKDMAK 465 (664)
Q Consensus 404 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 465 (664)
....+..+-...|++..|..--+..... .|....|..|.+.-.. .|+-.++...+.+..+
T Consensus 331 s~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 331 SSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3333444444455555544444444332 3444444444443322 2555555555555444
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.04 E-value=0.0044 Score=44.60 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=38.8
Q ss_pred HHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 006010 515 HGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT 581 (664)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 581 (664)
..|.+.+++++|.++++.++...|. +...|.....++.+.|++++|.+.+++..+ ..|+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD---DPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHH
Confidence 4556666777777777776554443 555566666666777777777777777665 4455443
No 210
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.02 E-value=0.32 Score=46.11 Aligned_cols=312 Identities=15% Similarity=0.136 Sum_probs=189.0
Q ss_pred ChhHHHHHHhhCCCCCCCCCChhHHHHHHHHHH--hCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHH--HhcCCHHHH
Q 006010 62 EQPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYA--NSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAY--GKAHLVEEA 137 (664)
Q Consensus 62 ~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A 137 (664)
.|-.+...|....+.. .|..+...+. -.|+-..|++.-.+..+.- ..+...+..++.+. .-.|++++|
T Consensus 68 sP~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~ll-ssDqepLIhlLeAQaal~eG~~~~A 139 (531)
T COG3898 68 SPYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKLL-SSDQEPLIHLLEAQAALLEGDYEDA 139 (531)
T ss_pred CcHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhhh-hccchHHHHHHHHHHHHhcCchHHH
Confidence 3455667776554433 4555554443 4577778877766655321 12333455554443 457999999
Q ss_pred HHHHHHhhhcCCCCCCHH--HHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC-HHHHHHHHHHHHhcCChhHHHHH
Q 006010 138 IRLFHTMVDEFHCKRTVK--SFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN-TLTFNLVIKTVCRLGLVDNAIQL 214 (664)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~ 214 (664)
.+-|+.|+. .|... ....|.-.-.+.|..+.|..+-+.... ..|. ...+...+...|..|+++.|+++
T Consensus 140 r~kfeAMl~----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~-----~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 140 RKKFEAMLD----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAE-----KAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred HHHHHHHhc----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh-----hccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 999999964 23222 222333333466888888888888755 3344 45788899999999999999999
Q ss_pred HhhcccCC-CCCCHHH--HHHHHHH--HHh-cCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHH
Q 006010 215 FREMPVRN-CEPDIYT--YCTLMDG--LCK-ENRLDEAVLLLDEMQVDGCFPTPVTF-NVLINGLCKNGELGRAAKLVDN 287 (664)
Q Consensus 215 ~~~~~~~~-~~~~~~~--~~~l~~~--~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~ 287 (664)
.+.-.... +.+++.- -..|+.+ ... .-+...|...-.+..+ +.||.+-- -.-..++.+.|+..++-.+++.
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILET 288 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence 98765442 2333321 1222221 111 2345566665555544 34554322 2335678899999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 006010 288 MFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVAS-KCMP-NEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHV 365 (664)
Q Consensus 288 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 365 (664)
+-+..+.|+. +. +..+.+.|+. ++.-++..... .++| +......+...-...|++..|..--+..... .|
T Consensus 289 aWK~ePHP~i--a~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~p 360 (531)
T COG3898 289 AWKAEPHPDI--AL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--AP 360 (531)
T ss_pred HHhcCCChHH--HH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--Cc
Confidence 9887544443 22 2334455553 33333333221 1233 4556667777778889988887766665544 56
Q ss_pred CHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCC
Q 006010 366 NEYIYSTLISGLF-KEGKAEDAMKLWKQMMEKGCKP 400 (664)
Q Consensus 366 ~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~ 400 (664)
....|..|.+.-- ..|+-.++...+-+..+..-.|
T Consensus 361 res~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 361 RESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 6777777776654 4599999999998887754333
No 211
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.013 Score=52.87 Aligned_cols=96 Identities=11% Similarity=0.153 Sum_probs=68.6
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHH
Q 006010 87 YSLIQHYANSGDFKSLEMVLYRMRREKR--VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT-VKSFNSVLNV 163 (664)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~ 163 (664)
+...-.+.+.|++..|...|...++..+ .....++.+|..++...|++++|..+|..+.+.++..|. ++++.-|..+
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 3344455666778888888888777643 344567778888888888888888888877776554443 4677777777
Q ss_pred HHHcCCHhHHHHHHHHHHh
Q 006010 164 IIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 164 ~~~~~~~~~A~~~~~~~~~ 182 (664)
..+.|+.++|...|+++.+
T Consensus 225 ~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 225 LGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 7888888888888888776
No 212
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.96 E-value=0.056 Score=50.36 Aligned_cols=138 Identities=9% Similarity=0.007 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCC---CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCHHH
Q 006010 509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKS---QPDVFTYNILLNALCKQSNISHSIDLLNSMMDR----GCDPDLVT 581 (664)
Q Consensus 509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~ 581 (664)
....+..++...+.++++++.|+.++...... ......+-.+...|.+..|+++|..+..++.+. ++..-...
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 33456777777888999999998886432211 112346778888899999999999888877652 22222222
Q ss_pred HHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc----CCCCC-hHHHHHHHHHhcccchHHHHHH
Q 006010 582 CNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK----FLSPQ-TSTWERVVQELCRPKRIQAAIN 656 (664)
Q Consensus 582 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 656 (664)
|..+... .++..+...|+.-+|.+.-++..+. |..+. ......+++.|...|+.+.|+.
T Consensus 204 yr~~~ly----------------hmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~ 267 (518)
T KOG1941|consen 204 YRAMSLY----------------HMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFR 267 (518)
T ss_pred HHHHHHH----------------HHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHH
Confidence 3333222 4566688999999999999888765 43332 2456778999999999999999
Q ss_pred HHHhhh
Q 006010 657 KCWSNL 662 (664)
Q Consensus 657 ~~~~~l 662 (664)
.|.+.+
T Consensus 268 rYe~Am 273 (518)
T KOG1941|consen 268 RYEQAM 273 (518)
T ss_pred HHHHHH
Confidence 888754
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.95 E-value=0.019 Score=48.24 Aligned_cols=72 Identities=29% Similarity=0.449 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 006010 509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD-----RGCDPDLVTCN 583 (664)
Q Consensus 509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 583 (664)
+...++..+...|++++|..+.+.++..+|- +...|..++.+|...|+..+|.+.|+++.+ .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~---~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY---DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4566777788999999999999999877665 888999999999999999999999998873 58999887643
No 214
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.94 E-value=0.46 Score=46.71 Aligned_cols=102 Identities=12% Similarity=0.090 Sum_probs=71.9
Q ss_pred CCCCHhHH-HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcch
Q 006010 540 SQPDVFTY-NILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSG 618 (664)
Q Consensus 540 ~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 618 (664)
..|+..++ +.+++-+.+.|-+++|...+.++... -+|....+..+++.=.+ .... +...
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~------------------~~sc-~l~~ 514 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKE------------------QESC-NLAN 514 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhh------------------Hhhc-CchH
Confidence 33455544 46777788888899999999998873 23344455555544111 1222 2677
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 619 GFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 619 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
+.++++.|... +-.|+..|......-...|..+.+-.++|+.+
T Consensus 515 ~r~~yd~a~~~-fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 515 IREYYDRALRE-FGADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHHHHHH-hCCChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 88899999876 22788999988888889999999999998865
No 215
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.93 E-value=0.43 Score=46.14 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhH-HHHH
Q 006010 437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKNN-CVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAY-SSMI 514 (664)
Q Consensus 437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~ 514 (664)
..+|..+++...+..-.+.|..+|-++.+.+ ..+++..+++++..++ .|+...|..+|+--... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4566777777777777888888888888777 4567777777777554 46777788888765543 3555444 3455
Q ss_pred HHHHHcCCHHHHHHHHHHhhhcCCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 006010 515 HGLCNAGSVEEALKLFNEMLCLEPKSQPD--VFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTAL 589 (664)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 589 (664)
..+...++-+.|..+|+..+.. +..+ ..+|..++..-..-|+...+..+=++|.+ .-|...+...+.+.+
T Consensus 474 ~fLi~inde~naraLFetsv~r---~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVER---LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH---HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 6667778888888888865321 1112 45788888877788888888888888876 455555544444443
No 216
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.87 E-value=0.63 Score=47.05 Aligned_cols=190 Identities=8% Similarity=-0.001 Sum_probs=108.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHH
Q 006010 436 NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIH 515 (664)
Q Consensus 436 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 515 (664)
+..+|...+..-...|+.+.+.-.+++..--- ..-...|-..+.-....|+.+-|..++....+-.++-.+.+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 45677777777778888888888887765311 12223454555555556888888877776655433323333222233
Q ss_pred HHHHcCCHHHHHHHHHHhhhcCCCCCCCHh-HHHHHHHHHHHcCChhHHH---HHHHHHHHCCCCCCHHHHHHHHHhhhh
Q 006010 516 GLCNAGSVEEALKLFNEMLCLEPKSQPDVF-TYNILLNALCKQSNISHSI---DLLNSMMDRGCDPDLVTCNIFLTALKE 591 (664)
Q Consensus 516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~ll~~~~~ 591 (664)
..-..|+++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+. .++....+... +......+.--...
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~----pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY----PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFAR 448 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC----CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHH
Confidence 3445689999999999885433 3322 1112233345677777777 33333332111 11111111111100
Q ss_pred hccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccc
Q 006010 592 KLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPK 649 (664)
Q Consensus 592 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 649 (664)
..+.-.++.+.|..++.++.+. ++++...|..+++.....+
T Consensus 449 ----------------~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 ----------------LRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred ----------------HHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 1145567788899999998875 6677788888877766555
No 217
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.76 E-value=0.6 Score=45.24 Aligned_cols=457 Identities=11% Similarity=0.047 Sum_probs=246.5
Q ss_pred HHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010 68 EIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE 147 (664)
Q Consensus 68 ~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 147 (664)
++-++.... +.+..+|..+++-+...|..++.++.++++.. ..+.-+.+|...+..-...+++.....+|.+-+..
T Consensus 30 rLRerIkdN---PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~-pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKDN---PTNILSYFQLIQYLETQESMDAEREMYEQLSS-PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhcC---chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC-CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 444444432 35778999999999999999999999999986 44556778888888877888999999999987653
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCH------hHHHHHHHHHHhcccCCCCcCHH-HHHHHHHHH---H------hcCChhHH
Q 006010 148 FHCKRTVKSFNSVLNVIIQEGLY------HRALEFYNHIVNAKHMNILPNTL-TFNLVIKTV---C------RLGLVDNA 211 (664)
Q Consensus 148 ~~~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~---~------~~g~~~~A 211 (664)
..+...|...+.-..+.+.. ....+.|+-.... .++.|... .|+..+..+ - ++.+++..
T Consensus 106 ---~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~--~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i 180 (660)
T COG5107 106 ---SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGC--AIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI 180 (660)
T ss_pred ---hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhc--ccccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence 55677787776654443311 1233344444331 34444332 344333322 2 23345566
Q ss_pred HHHHhhcccCCCCCCHHHHHHH------HHHHHh---cC----ChhHHHHHHHHHHh--CCCC----CCHHHHHH-----
Q 006010 212 IQLFREMPVRNCEPDIYTYCTL------MDGLCK---EN----RLDEAVLLLDEMQV--DGCF----PTPVTFNV----- 267 (664)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l------~~~~~~---~g----~~~~a~~~~~~~~~--~~~~----~~~~~~~~----- 267 (664)
+..+..++..-+..-...|+.. ++-... -| -+-.|.+.+++... .|.. .+..+++.
T Consensus 181 R~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s 260 (660)
T COG5107 181 RNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTS 260 (660)
T ss_pred HHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccc
Confidence 6777776654211111122111 111100 01 12345555555432 2211 11222222
Q ss_pred ------HHHHHHhcC-----Ch--hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh
Q 006010 268 ------LINGLCKNG-----EL--GRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVT 334 (664)
Q Consensus 268 ------li~~~~~~g-----~~--~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 334 (664)
.|..-...| +. .+.--++++.... +.-....|----..+...++-+.|++..+. |++..+..
T Consensus 261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~spsL 335 (660)
T COG5107 261 DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMSPSL 335 (660)
T ss_pred cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCCCch
Confidence 221111110 00 0111111111111 011222232222333345556666655443 32222222
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006010 335 YGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFK---EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDG 411 (664)
Q Consensus 335 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 411 (664)
...+...|--.++-+.....|+.+.+. ...-...+.+-.. .|+++...+++-+= ...-..+|...++.
T Consensus 336 ~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr----~~k~t~v~C~~~N~ 406 (660)
T COG5107 336 TMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKR----INKLTFVFCVHLNY 406 (660)
T ss_pred heeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHH----HhhhhhHHHHHHHH
Confidence 222333444445555555555554331 0000011111111 12232222221111 11235667778888
Q ss_pred HHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHcCCChH
Q 006010 412 LCRVGKPDEAEEILFEMINNG-CAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVC-YSVLIHGLCEDGKLR 489 (664)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~ 489 (664)
..+..-.+.|..+|-++.+.+ +.+++..+++++..++ .|+..-|.++|+.-.... ||... -+..+..+...++-.
T Consensus 407 v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~fLi~inde~ 483 (660)
T COG5107 407 VLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLLFLIRINDEE 483 (660)
T ss_pred HHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCcHH
Confidence 888888999999999999988 6778888898888764 678889999998866654 44433 345667778889999
Q ss_pred HHHHHHHHHHhCCCCcC--HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHH
Q 006010 490 EARMVWTQMLSRGCKPD--VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALC 555 (664)
Q Consensus 490 ~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 555 (664)
.|..+|+..+.. +..+ ...|..++.--..-|+...+..+=+++.. ..|-..+.......|.
T Consensus 484 naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e----~~pQen~~evF~Sry~ 546 (660)
T COG5107 484 NARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE----LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH----HcCcHhHHHHHHHHHh
Confidence 999999976653 2333 46888899888899999988888777743 3334444444444443
No 218
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.74 E-value=0.093 Score=53.55 Aligned_cols=164 Identities=15% Similarity=0.154 Sum_probs=103.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCcCHHhHH
Q 006010 442 SLMKGFFESGKGHKAVEIWKDMAKNNCVYNE------VCYSVLIHGLCE----DGKLREARMVWTQMLSRGCKPDVVAYS 511 (664)
Q Consensus 442 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~ 511 (664)
.++...+-.|+.+.+++.+....+.+....+ ..|...+..++. ..+.+.|.++++.+... -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 3444444455555555555554442211111 123333333332 45788899999999875 57776665
Q ss_pred HH-HHHHHHcCCHHHHHHHHHHhhhcCCC-CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 006010 512 SM-IHGLCNAGSVEEALKLFNEMLCLEPK-SQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTAL 589 (664)
Q Consensus 512 ~l-~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 589 (664)
.. .+.+...|++++|++.|++++..... .+.....+--+...+.-.++|++|.+.+.++.+.. .-...+|..+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 43 56677889999999999987421111 11223344456677888999999999999999742 22455666666665
Q ss_pred hhhccCCCCchhhhHHHHHHhhhcCCc-------chHHHHHHHHHH
Q 006010 590 KEKLEAPQDGTDFLNELAIRLFKRQRT-------SGGFKIVEVMLQ 628 (664)
Q Consensus 590 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~ 628 (664)
+...|+. ++|.++++++..
T Consensus 350 --------------------~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 --------------------LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred --------------------HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 7777777 778888877654
No 219
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.71 E-value=0.012 Score=42.39 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=28.0
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010 127 AYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 182 (664)
.|.+.+++++|++.++.++.. .|.++..|...+.++.+.|++++|...++.+.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344555555555555555443 233444555555555555555555555555554
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.42 Score=42.76 Aligned_cols=131 Identities=13% Similarity=0.035 Sum_probs=63.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH-----HH
Q 006010 231 CTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTL-----IH 305 (664)
Q Consensus 231 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l-----~~ 305 (664)
+.++.++.-.|.+.-...++.++.+...+.++.....|.+.-.+.||.+.|...|++..+..-..|..+.+.+ ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 3344444445555555555555555444445555555555555556666655555544433222222222222 22
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006010 306 GLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERK 362 (664)
Q Consensus 306 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 362 (664)
.|.-.+++..|...+.++...+ +.|+..-|.-.-+..-.|+..+|.+.++.|.+..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3334555556666665555543 2233333322223333466666666666666653
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.70 E-value=0.15 Score=42.85 Aligned_cols=57 Identities=18% Similarity=0.249 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010 231 CTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM 288 (664)
Q Consensus 231 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (664)
..++..+...|++++|..+.+.+.... +-+...|..+|.+|...|+...|.+.|+.+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444444555555555555544432 223445555555555555555555555444
No 222
>PRK11906 transcriptional regulator; Provisional
Probab=96.69 E-value=0.1 Score=51.18 Aligned_cols=122 Identities=11% Similarity=0.051 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHc---------CCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc
Q 006010 452 KGHKAVEIWKDMAKN-NCVYN-EVCYSVLIHGLCE---------DGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA 520 (664)
Q Consensus 452 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 520 (664)
..+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.++-+..++.+ .-|..+...+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 345667777777621 11232 3344444433321 123445666666666654 34566666666666666
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006010 521 GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL 579 (664)
Q Consensus 521 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 579 (664)
|+++.|..+|+++..++|+ ....|......+.-.|+.++|.+.+++..+ ..|..
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn---~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~ 405 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD---IASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRR 405 (458)
T ss_pred cchhhHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchh
Confidence 7777777777777554443 334555555555667777777777777665 45543
No 223
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.43 Score=42.65 Aligned_cols=140 Identities=15% Similarity=0.128 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHH-----hHHHHHH
Q 006010 441 SSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVV-----AYSSMIH 515 (664)
Q Consensus 441 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~l~~ 515 (664)
..++....-.|.+.-....+...++...+.++.....+++.-.+.||.+.|...|++..+..-..|.. .......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34444444455555555555555555544555555556666666666666666666544321122222 2223333
Q ss_pred HHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006010 516 GLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIF 585 (664)
Q Consensus 516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 585 (664)
.|.-.+++.+|...+.+++..++. |+..-|.-.-+..-.|+..+|++.++.|.+ ..|...+-+.+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~---~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR---NAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred heecccchHHHHHHHhhccccCCC---chhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence 455566777777777777543332 344444433344456777888888888876 45555544433
No 224
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.66 E-value=0.063 Score=43.51 Aligned_cols=74 Identities=18% Similarity=0.150 Sum_probs=61.4
Q ss_pred CChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 006010 81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKR--VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTV 154 (664)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 154 (664)
.++..+..-.....+.|++++|.+.|+.+...-+ +....+...++.+|.+.|++++|+..+++.++.++..|++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 3556777788888999999999999999998733 4566788899999999999999999999998876666664
No 225
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.65 E-value=0.043 Score=42.88 Aligned_cols=95 Identities=17% Similarity=0.074 Sum_probs=61.9
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhc
Q 006010 126 KAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRL 205 (664)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 205 (664)
.+.+..|+.+.|++.|.+.+.. .+..+..||.-.+++.-+|+.++|++-+++.++..+..-..-...|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3456777888888888777654 55667778888888888888888888777776632111111112344444556667
Q ss_pred CChhHHHHHHhhcccCC
Q 006010 206 GLVDNAIQLFREMPVRN 222 (664)
Q Consensus 206 g~~~~A~~~~~~~~~~~ 222 (664)
|+.+.|+.-|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 77777777777766655
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.59 E-value=0.0069 Score=44.26 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHH
Q 006010 545 FTYNILLNALCKQSNISHSIDLLNSMMDR--GCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKI 622 (664)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 622 (664)
.+|+.+...|...|++++|++.+++.++. ...++.. .++.. +..++.++...|++++|.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---~~a~~--------------~~~lg~~~~~~g~~~~A~~~ 68 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHP---DTANT--------------LNNLGECYYRLGDYEEALEY 68 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHH---HHHHH--------------HHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCH---HHHHH--------------HHHHHHHHHHcCCHHHHHHH
Confidence 46788888999999999999999988853 1222211 11111 23567779999999999999
Q ss_pred HHHHHH
Q 006010 623 VEVMLQ 628 (664)
Q Consensus 623 ~~~~~~ 628 (664)
+++..+
T Consensus 69 ~~~al~ 74 (78)
T PF13424_consen 69 YQKALD 74 (78)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998865
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=96.58 E-value=0.03 Score=46.42 Aligned_cols=95 Identities=11% Similarity=-0.002 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q 006010 121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIK 200 (664)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~ 200 (664)
....+.-+...|++++|..+|+-+... .+-+..-|..|..++-..+++++|+..|........ -|...+--...
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~----~dp~p~f~agq 113 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK----NDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----CCCCccchHHH
Confidence 334444455666677776666665433 233445566666666666666777666666544221 12222334455
Q ss_pred HHHhcCChhHHHHHHhhcccC
Q 006010 201 TVCRLGLVDNAIQLFREMPVR 221 (664)
Q Consensus 201 ~~~~~g~~~~A~~~~~~~~~~ 221 (664)
++...|+.+.|+..|+.....
T Consensus 114 C~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHhC
Confidence 666666666676666666554
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.54 E-value=0.0079 Score=43.97 Aligned_cols=65 Identities=22% Similarity=0.360 Sum_probs=40.6
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCC---CCC-HhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 508 VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKS---QPD-VFTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
.+++.+...|...|++++|+..|++++...... .|+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456667777777777777777777775431111 122 34566677777777777777777777654
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.036 Score=50.02 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010 509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA 588 (664)
Q Consensus 509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 588 (664)
.|+.-+.. .+.|++..|...|...++.-|+..-....+..|..++...|++++|...|..+.+. .|+..
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~-------- 212 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSP-------- 212 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCC--------
Confidence 45554443 45677888888888887666665555666777888888888888888888888762 22221
Q ss_pred hhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 589 LKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 589 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
++-+.+-.|+.+..+.|+.++|...|+++.++
T Consensus 213 ---------KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 213 ---------KAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred ---------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 11122223455588888888888888888886
No 230
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.45 E-value=0.46 Score=48.10 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=57.9
Q ss_pred HHHHHcCCChHHHHHHHH------HHHhCCCC---cCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHH
Q 006010 479 IHGLCEDGKLREARMVWT------QMLSRGCK---PDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNI 549 (664)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~------~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 549 (664)
...+...|+.++|..+.- -+.+-+.+ .+..+...+..-+.+...+.-|-++|.++ + | ...
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~-----g---D---~ks 778 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM-----G---D---LKS 778 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh-----c---c---HHH
Confidence 445566777777765531 11111111 12334444444444555566666666665 1 1 224
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHH
Q 006010 550 LLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVM 626 (664)
Q Consensus 550 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (664)
++......++|.+|..+-++..+ ..||. |....+. +....++++|.+.|-++
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe--~~~dV--y~pyaqw---------------------LAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPE--FKDDV--YMPYAQW---------------------LAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HhhheeecccchHhHhhhhhCcc--ccccc--cchHHHH---------------------hhhhhhHHHHHHHHHHh
Confidence 55556666777777777666554 33332 2222333 55566666666666655
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.43 E-value=0.98 Score=43.79 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=24.0
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006010 543 DVFTYNILLNALCKQSNISHSIDLLNSMMDR 573 (664)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 573 (664)
+--.+..++.++.-.|++++|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3444557778888889999999999998874
No 232
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.045 Score=52.13 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=61.7
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010 508 VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLT 587 (664)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 587 (664)
.+++.+..++.+.+++.+|+..-++.+..+++ |.-....-..+|...|+++.|...|+++++ +.|+......=+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~---N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN---NVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELI 332 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence 36677788888889999999999888765554 666666677888888999999999999988 7888877777776
Q ss_pred hhh
Q 006010 588 ALK 590 (664)
Q Consensus 588 ~~~ 590 (664)
.|.
T Consensus 333 ~l~ 335 (397)
T KOG0543|consen 333 KLK 335 (397)
T ss_pred HHH
Confidence 654
No 233
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.35 E-value=0.22 Score=50.02 Aligned_cols=131 Identities=20% Similarity=0.228 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHH
Q 006010 155 KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLM 234 (664)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 234 (664)
...+.++..+-+.|..+.|+++...-. .-.....+.|+++.|.++.++.. +...|..|.
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~---------------~rFeLAl~lg~L~~A~~~a~~~~------~~~~W~~Lg 354 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD---------------HRFELALQLGNLDIALEIAKELD------DPEKWKQLG 354 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH---------------HHHHHHHHCT-HHHHHHHCCCCS------THHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH---------------HHhHHHHhcCCHHHHHHHHHhcC------cHHHHHHHH
Confidence 345555666666666666655432211 11233445566666665554433 445666666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006010 235 DGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLD 314 (664)
Q Consensus 235 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 314 (664)
....+.|+++-|++.|.+... |..|+-.|...|+.+...++.+.....|. ++....++.-.|+.+
T Consensus 355 ~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~ 419 (443)
T PF04053_consen 355 DEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVE 419 (443)
T ss_dssp HHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HH
T ss_pred HHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHH
Confidence 666666666666666655442 44455555556666555555555544431 233334444455555
Q ss_pred HHHHHHH
Q 006010 315 KAVSLLD 321 (664)
Q Consensus 315 ~a~~~~~ 321 (664)
+..+++.
T Consensus 420 ~cv~lL~ 426 (443)
T PF04053_consen 420 ECVDLLI 426 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 234
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=1.7 Score=45.76 Aligned_cols=178 Identities=15% Similarity=0.160 Sum_probs=118.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHH
Q 006010 121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT--VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLV 198 (664)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 198 (664)
.-.-+..+.+...++.|+.+...- +..++ .......+.-+.+.|++++|...|-+... -+.|. .+
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~----~le~s-----~V 403 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG----FLEPS-----EV 403 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc----cCChH-----HH
Confidence 445566677888899999887654 12222 22344455566688999999999988765 23343 34
Q ss_pred HHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 006010 199 IKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGEL 278 (664)
Q Consensus 199 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 278 (664)
+.-|....++.+-...++.+.+.|+ .+...-..|+.+|.+.++.+.-.+..+... .|.. ..-....+..+.+.+-.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 5666677777777888888888884 355566788999999999988777766654 3321 11234556667777777
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006010 279 GRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRM 323 (664)
Q Consensus 279 ~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 323 (664)
++|..+-..... +......++ -..|++++|++++..+
T Consensus 480 ~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 777766655422 333444443 3568899999988765
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.41 Score=43.88 Aligned_cols=158 Identities=17% Similarity=0.151 Sum_probs=96.8
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC
Q 006010 480 HGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN 559 (664)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 559 (664)
......|++.+|..+|....... +-+...-..++.+|...|+.+.|..++..+- .............-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP--~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP--LQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc--ccchhhHHHHHHHHHHHHHHHhc
Confidence 34567788888888888877652 2234566677888888888888888887761 11111111112223444555555
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcC-CCCChHHH
Q 006010 560 ISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKF-LSPQTSTW 638 (664)
Q Consensus 560 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 638 (664)
..+...+-.+.-. .|+..-...- ++..+...|+.++|.+.+-.+.++. -.-|...-
T Consensus 219 ~~~~~~l~~~~aa---dPdd~~aa~~--------------------lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~R 275 (304)
T COG3118 219 TPEIQDLQRRLAA---DPDDVEAALA--------------------LADQLHLVGRNEAALEHLLALLRRDRGFEDGEAR 275 (304)
T ss_pred CCCHHHHHHHHHh---CCCCHHHHHH--------------------HHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHH
Confidence 5555555555542 4433322222 2333888888888888887777662 23366777
Q ss_pred HHHHHHhcccchHHHHHHHHHhhhc
Q 006010 639 ERVVQELCRPKRIQAAINKCWSNLY 663 (664)
Q Consensus 639 ~~l~~~~~~~g~~~~A~~~~~~~l~ 663 (664)
..+++.+..-|..+.+...+++.|+
T Consensus 276 k~lle~f~~~g~~Dp~~~~~RRkL~ 300 (304)
T COG3118 276 KTLLELFEAFGPADPLVLAYRRKLY 300 (304)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 7888888888877777666777664
No 236
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.30 E-value=1.1 Score=42.97 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHH
Q 006010 476 SVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALC 555 (664)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 555 (664)
+.-+.-+...|+...|.++-.+.. .|+..-|...+.+++..|++++-.++... +-++.-|.-++.+|.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--------KKSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--------CCCCCChHHHHHHHH
Confidence 333444555666666666554442 35666666666666666666655554321 112344666666666
Q ss_pred HcCChhHHHHHHHH
Q 006010 556 KQSNISHSIDLLNS 569 (664)
Q Consensus 556 ~~g~~~~A~~~~~~ 569 (664)
+.|+..+|..++.+
T Consensus 249 ~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 249 KYGNKKEASKYIPK 262 (319)
T ss_pred HCCCHHHHHHHHHh
Confidence 66666666666555
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.29 E-value=0.046 Score=53.38 Aligned_cols=66 Identities=9% Similarity=-0.113 Sum_probs=58.5
Q ss_pred CChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006010 81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLE--KSFIFIFKAYGKAHLVEEAIRLFHTMVD 146 (664)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 146 (664)
.++.+++.+..+|...|++++|...|++.+..++.... .+|+.+..+|...|+.++|+..+++.++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999988765332 4699999999999999999999999875
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.26 E-value=0.22 Score=50.90 Aligned_cols=163 Identities=15% Similarity=0.104 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHH------HHHHHHHHHHH----cCCHhHHHHHHHHHHhcccCCCC
Q 006010 120 SFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVK------SFNSVLNVIIQ----EGLYHRALEFYNHIVNAKHMNIL 189 (664)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~ 189 (664)
.+..++...+-.|+-+.+++.+....+..+. ..+. .|..++..++- ....+.|.++++.+.+ --
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i-~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~-----~y 263 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENI-RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK-----RY 263 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCc-chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH-----hC
Confidence 4556666666677777777777665442222 2221 22333332222 3456677777777765 23
Q ss_pred cCHHHHHH-HHHHHHhcCChhHHHHHHhhcccC--CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 006010 190 PNTLTFNL-VIKTVCRLGLVDNAIQLFREMPVR--NC-EPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTF 265 (664)
Q Consensus 190 ~~~~~~~~-ll~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 265 (664)
|+...|.. -.+.+...|++++|++.|+..... .. +.....+--+.-.+.-.+++++|.+.|..+.+.+ ..+..+|
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y 342 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFY 342 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHH
Confidence 55444443 344455567777777777765431 11 1123344455666777778888888888877653 2233334
Q ss_pred HHHH-HHHHhcCCh-------hHHHHHHHHHH
Q 006010 266 NVLI-NGLCKNGEL-------GRAAKLVDNMF 289 (664)
Q Consensus 266 ~~li-~~~~~~g~~-------~~a~~~~~~~~ 289 (664)
.-+. .++...|+. ++|.++|.+..
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3332 234455666 77777777764
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.093 Score=50.10 Aligned_cols=96 Identities=19% Similarity=0.145 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHH
Q 006010 473 VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLN 552 (664)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 552 (664)
.++..+..++.+.+++.+|++.-...+..+ ++|....-.-..+|...|+++.|+..|+++++.+|. |..+-+.++.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~---Nka~~~el~~ 333 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS---NKAARAELIK 333 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC---cHHHHHHHHH
Confidence 356667888899999999999999998875 567788888889999999999999999999876665 5555566665
Q ss_pred HHHHcCChh-HHHHHHHHHHH
Q 006010 553 ALCKQSNIS-HSIDLLNSMMD 572 (664)
Q Consensus 553 ~~~~~g~~~-~A~~~~~~~~~ 572 (664)
+-.+...+. ...++|..|..
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 555544443 44778888885
No 240
>PRK15331 chaperone protein SicA; Provisional
Probab=96.16 E-value=0.079 Score=44.03 Aligned_cols=90 Identities=9% Similarity=-0.015 Sum_probs=65.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC
Q 006010 479 IHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS 558 (664)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 558 (664)
...+...|++++|..+|.-+...+ .-+..-|..|..++-..+++++|+..|..+.....+ |+..+-....++...|
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~---dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN---DYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC---CCCccchHHHHHHHhC
Confidence 344567888888888888777654 234556777788888888888888888877544432 3444455677888888
Q ss_pred ChhHHHHHHHHHHH
Q 006010 559 NISHSIDLLNSMMD 572 (664)
Q Consensus 559 ~~~~A~~~~~~~~~ 572 (664)
+.+.|...|+...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 88888888888886
No 241
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.11 E-value=0.099 Score=51.19 Aligned_cols=65 Identities=9% Similarity=0.015 Sum_probs=56.4
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-H---HHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010 115 VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT-V---KSFNSVLNVIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 182 (664)
+.....++.+..+|...|++++|+..|++.++. .|+ . .+|..+..+|...|++++|+..++++++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456778999999999999999999999998774 343 3 4599999999999999999999999987
No 242
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.10 E-value=0.13 Score=40.37 Aligned_cols=53 Identities=36% Similarity=0.580 Sum_probs=30.5
Q ss_pred HHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 517 LCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 517 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
....|+.+.|++.|.+.++.-|. +...||.-..++.-+|+.++|++-+++.++
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 44556666666666666544332 445566666666666666666666666655
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=1.1 Score=41.23 Aligned_cols=28 Identities=14% Similarity=-0.022 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010 261 TPVTFNVLINGLCKNGELGRAAKLVDNM 288 (664)
Q Consensus 261 ~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (664)
|...-..+...+...|+.+.|.+.+-.+
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333344444445555555554444433
No 244
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.93 E-value=1.7 Score=41.74 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=36.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 006010 408 LIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGK 487 (664)
Q Consensus 408 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 487 (664)
.+.-+...|+...|.++-.+.. -|+...|...+.+++..+++++-.++... .-++.-|...+.+|...|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344444555544444433331 24445555555555555555544443221 1223444455555555555
Q ss_pred hHHHHHHHHH
Q 006010 488 LREARMVWTQ 497 (664)
Q Consensus 488 ~~~A~~~~~~ 497 (664)
..+|..+...
T Consensus 253 ~~eA~~yI~k 262 (319)
T PF04840_consen 253 KKEASKYIPK 262 (319)
T ss_pred HHHHHHHHHh
Confidence 5555544433
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.86 E-value=0.39 Score=39.05 Aligned_cols=88 Identities=10% Similarity=0.136 Sum_probs=63.9
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHH
Q 006010 115 VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKR-TVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTL 193 (664)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 193 (664)
..+...+..-+....+.|++++|++.|+.+...++..+ ...+-..++.++.+.+++++|...+++.++..|..- + .
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp--~-v 83 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP--N-V 83 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC--C-c
Confidence 33455666667777899999999999999977765544 345677899999999999999999999998544332 2 2
Q ss_pred HHHHHHHHHHhc
Q 006010 194 TFNLVIKTVCRL 205 (664)
Q Consensus 194 ~~~~ll~~~~~~ 205 (664)
-|...+.+++..
T Consensus 84 dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 84 DYAYYMRGLSYY 95 (142)
T ss_pred cHHHHHHHHHHH
Confidence 344445554443
No 246
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=2.8 Score=43.69 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=83.1
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010 508 VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLT 587 (664)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 587 (664)
-+.+--+.-+...|+..+|.++-.+. .-||...|-.-+.++...+++++-+++-+.+.. +..|.-++.
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~F------kipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe 752 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDF------KIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVE 752 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhc------CCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHH
Confidence 34555566677789999999998887 557888888888899999999988887777652 344556677
Q ss_pred hhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHH
Q 006010 588 ALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCW 659 (664)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 659 (664)
+ +.+.|+.++|.+++-+... .+ ..+.+|.+.|++.+|.+.--
T Consensus 753 ~---------------------c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 753 A---------------------CLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred H---------------------HHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 7 7888999999988877532 11 57788888899988887543
No 247
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=1.2 Score=39.48 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHH
Q 006010 155 KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLM 234 (664)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 234 (664)
..|..-..+|....+|++|...+.+..+. ...+...|. ..+.++.|.-+.+++.+.. .-+..|+--.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~----yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs 98 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG----YENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKAS 98 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH----HHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHH
Confidence 34555566667777788777777776541 111222221 1123445555555554431 1233455556
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 006010 235 DGLCKENRLDEAVLLLDEMQ 254 (664)
Q Consensus 235 ~~~~~~g~~~~a~~~~~~~~ 254 (664)
..|..+|.++.|-..+++..
T Consensus 99 ~lY~E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAA 118 (308)
T ss_pred HHHHHhCCcchHHHHHHHHH
Confidence 66667777666666665543
No 248
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.81 E-value=0.19 Score=40.41 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 006010 259 FPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK-GCLPNEVTYNTLIH 305 (664)
Q Consensus 259 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~l~~ 305 (664)
.|+..+..+++.+|+.+|++..|.++++..... +++.+...|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 355555555555555555555555555554333 44444445555544
No 249
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.81 E-value=0.44 Score=38.32 Aligned_cols=53 Identities=8% Similarity=-0.019 Sum_probs=42.4
Q ss_pred CCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHhh
Q 006010 537 EPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD-RGCDPDLVTCNIFLTAL 589 (664)
Q Consensus 537 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~ll~~~ 589 (664)
.....|+..+..+++.+|+..|++..|+++++...+ .+++.+..+|..++..+
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 345678888888888888888899999988888875 46777788888888875
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.73 E-value=0.65 Score=43.62 Aligned_cols=193 Identities=13% Similarity=0.086 Sum_probs=92.3
Q ss_pred cCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CC---CCHHHHHHHHHHHHhcCC
Q 006010 380 EGKAEDAMKLWKQMMEK--GCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNG--CA---ANAFTYSSLMKGFFESGK 452 (664)
Q Consensus 380 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~~ 452 (664)
..+.++|+..|.+...+ +......++..+..+.++.|.+++++..--..++.- .. .-...|..+..++.+.-+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544432 001122344445555566666555544322111100 00 012334445555555555
Q ss_pred hHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC-----CcCHHhHHHHHHHHHHcCCH
Q 006010 453 GHKAVEIWKDMAKN-NCVY---NEVCYSVLIHGLCEDGKLREARMVWTQMLSRGC-----KPDVVAYSSMIHGLCNAGSV 523 (664)
Q Consensus 453 ~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~ 523 (664)
+.+++.+-+.-... |..+ ......++..++...+.++++++.|+...+.-. .....++..|...|.+..++
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 55555554443321 1111 112233355566666677777777776654211 11224666777777777777
Q ss_pred HHHHHHHHHhhhcCCCCCC-CH------hHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 524 EEALKLFNEMLCLEPKSQP-DV------FTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 524 ~~A~~~~~~~~~~~~~~~~-~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
++|.-+..++..+...... |. .....|.-++...|...+|.+.-++..+
T Consensus 179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 7777666655433222221 11 1222344456677777777777766553
No 251
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.57 E-value=1.7 Score=39.22 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=34.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006010 272 LCKNGELGRAAKLVDNMFLKGC--LPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVAS 326 (664)
Q Consensus 272 ~~~~g~~~~a~~~~~~~~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 326 (664)
-.+.|++++|.+.|+.+..+-+ +-...+...++.++.+.++++.|....++....
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3456777777777777765411 112345555666677777777777777776664
No 252
>PRK11906 transcriptional regulator; Provisional
Probab=95.54 E-value=1.3 Score=43.86 Aligned_cols=150 Identities=14% Similarity=0.125 Sum_probs=105.6
Q ss_pred ChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 006010 417 KPDEAEEILFEMINNG-CAA-NAFTYSSLMKGFFES---------GKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCED 485 (664)
Q Consensus 417 ~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 485 (664)
..+.|..+|.+..... ..| ....|..+..++... .+..+|.+.-++..+.+ +.|..+...+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4578888999998321 233 355565555544322 23456777788888877 67888888888888888
Q ss_pred CChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHH
Q 006010 486 GKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSI 564 (664)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 564 (664)
++++.|...|++.... .|| ..+|......+.-+|+.++|.+.++++++++|. +....+....++.|+.. ..++|+
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~-~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR-RRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch-hhHHHHHHHHHHHHcCC-chhhhH
Confidence 9999999999999985 566 456777777778899999999999998765542 22333444455566544 567888
Q ss_pred HHHHHHH
Q 006010 565 DLLNSMM 571 (664)
Q Consensus 565 ~~~~~~~ 571 (664)
.++-+-.
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 8776544
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.46 Score=44.10 Aligned_cols=113 Identities=12% Similarity=0.043 Sum_probs=49.6
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHH----HHHHHHHHhcC
Q 006010 131 AHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTF----NLVIKTVCRLG 206 (664)
Q Consensus 131 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~g 206 (664)
.|+..+|...++++++. .|.|..+++-.=.++.-.|+...-...++++.. . -.+|...| ....-++...|
T Consensus 116 ~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip---~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP---K-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred cccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc---c-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 34444444445554443 334444444444444455555554555544433 1 11222111 11222223445
Q ss_pred ChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006010 207 LVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLL 250 (664)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 250 (664)
-+++|.+.-++..+.+ +.|..+-.+..+.+--.|+..++.+..
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 5555555555544444 344444445555555555555554443
No 254
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.44 E-value=2.4 Score=40.08 Aligned_cols=172 Identities=16% Similarity=0.130 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHH
Q 006010 438 FTYSSLMKGFFESGKGH---KAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMI 514 (664)
Q Consensus 438 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 514 (664)
.++..++.+|...+..+ +|.++++.+.... +.....+..-+..+.+.++.+++.+++.+|+..- .-....+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 45667777887777654 4555555554433 3334555555666667888899999999988752 21223444444
Q ss_pred HHH---HHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHH-HH-HHHH--HcCC------hhHHHHHHHHHHHC-CCCCCHH
Q 006010 515 HGL---CNAGSVEEALKLFNEMLCLEPKSQPDVFTYNI-LL-NALC--KQSN------ISHSIDLLNSMMDR-GCDPDLV 580 (664)
Q Consensus 515 ~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-l~-~~~~--~~g~------~~~A~~~~~~~~~~-~~~p~~~ 580 (664)
..+ .. .....|...+..++.......+|. .... ++ ..+. +.++ .+....++....+. +.+.+..
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 443 33 334566666666653333333332 1111 11 1111 1111 33344444433321 2233333
Q ss_pred HHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHH
Q 006010 581 TCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVML 627 (664)
Q Consensus 581 ~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (664)
+...+...+-+ -+..+.+.++|++|.++++-..
T Consensus 241 ~~~a~~~LLW~--------------~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWN--------------KGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHH--------------HHHHHHhhcCHHHHHHHHHHHH
Confidence 32222222111 2233888999999999988654
No 255
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.42 E-value=2.2 Score=42.34 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 511 SSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 511 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
..+..++.+.|+.++|++.+.++++..+ ..-+......|+.++...+.+.++..++.+--+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p-~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFP-NLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCC-ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 4455666677777777777777753222 222344566677777777777777777777643
No 256
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.42 E-value=0.51 Score=40.34 Aligned_cols=133 Identities=10% Similarity=0.070 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHh--HHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHH
Q 006010 472 EVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVA--YSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNI 549 (664)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 549 (664)
...|..++.... .+.. +.....+++....-.....+ -..+...+..+|++++|+..++..+....+.......--.
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 345555555543 2223 44444455554311111111 1233455667777777777777764211110001111122
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 550 LLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 550 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
|.+.....|.+++|+..++...+.+ |..++.- .-|+++...|+-++|..-|++..+.
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~-------w~~~~~e----------------lrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEES-------WAAIVAE----------------LRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhcccccc-------HHHHHHH----------------HhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3345667777777777777665422 2222222 1234477777777777777777765
No 257
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.37 E-value=2.1 Score=39.08 Aligned_cols=222 Identities=21% Similarity=0.174 Sum_probs=138.2
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 006010 380 EGKAEDAMKLWKQMMEKGCKP-NTVVYSALIDGLCRVGKPDEAEEILFEMINN-GCAANAFTYSSLMKGFFESGKGHKAV 457 (664)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 457 (664)
.+....+...+.......... ....+......+...++...+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 355566666666665543221 2456666777777888888888888777652 22445566666777777777888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHcCCChHHHHHHHHHHHhCCCCc----CHHhHHHHHHHHHHcCCHHHHHHHHHH
Q 006010 458 EIWKDMAKNNCVYNEVCYSVLIH-GLCEDGKLREARMVWTQMLSRGCKP----DVVAYSSMIHGLCNAGSVEEALKLFNE 532 (664)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 532 (664)
+.+.........+ ......... .+...|+++.|...+.+.... .| ....+......+...++.+.|...+.+
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 8888777654222 122222233 677888888888888887552 33 233444444556677788888888888
Q ss_pred hhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHhhhhhccCCCCchhhhHHHHHHhh
Q 006010 533 MLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD-LVTCNIFLTALKEKLEAPQDGTDFLNELAIRLF 611 (664)
Q Consensus 533 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~ 611 (664)
++...+.. ....+..+...+...+++++|...+..... ..|+ ...+...... +.
T Consensus 193 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~---------------------~~ 247 (291)
T COG0457 193 ALKLNPDD--DAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALL---------------------LL 247 (291)
T ss_pred HHhhCccc--chHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHH---------------------HH
Confidence 75322211 345666777777777888888888888876 3444 2222222222 33
Q ss_pred hcCCcchHHHHHHHHHHc
Q 006010 612 KRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~ 629 (664)
..|.++++...+.+..+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 248 ELGRYEEALEALEKALEL 265 (291)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666777888777777763
No 258
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.37 E-value=2.9 Score=40.62 Aligned_cols=100 Identities=13% Similarity=0.019 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHh---cCChhHHHHHHhhcccCCCCCCHHHHHH
Q 006010 156 SFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCR---LGLVDNAIQLFREMPVRNCEPDIYTYCT 232 (664)
Q Consensus 156 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 232 (664)
+...++-+|....+++..+++++.+.......+.-...+-....-++.+ .|+.++|++++..+....-.+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3445555677777888888888887652111111122222234445555 7888888888877544444677777777
Q ss_pred HHHHHHh---------cCChhHHHHHHHHHHh
Q 006010 233 LMDGLCK---------ENRLDEAVLLLDEMQV 255 (664)
Q Consensus 233 l~~~~~~---------~g~~~~a~~~~~~~~~ 255 (664)
+.+.|-. ....++|...|.+.-.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 7766643 1124556666655544
No 259
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.33 E-value=0.77 Score=46.25 Aligned_cols=161 Identities=13% Similarity=0.129 Sum_probs=108.3
Q ss_pred HHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCC
Q 006010 90 IQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGL 169 (664)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (664)
.+...-.++++++.+....-.- -+..+......++..+.+.|..+.|+++-.. + ..-.....+.|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~l-l~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D----------~---~~rFeLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNL-LPNIPKDQGQSIARFLEKKGYPELALQFVTD----------P---DHRFELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHT-GGG--HHHHHHHHHHHHHTT-HHHHHHHSS-----------H---HHHHHHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhh-cccCChhHHHHHHHHHHHCCCHHHHHhhcCC----------h---HHHhHHHHhcCC
Confidence 4566777888887766641111 1233455678888889999999999886422 2 233455678899
Q ss_pred HhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006010 170 YHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLL 249 (664)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 249 (664)
++.|.++.+.. ++...|..|.....+.|+++-|.+.|++... +..|+-.|.-.|+.+.-.++
T Consensus 334 L~~A~~~a~~~---------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 334 LDIALEIAKEL---------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp HHHHHHHCCCC---------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHhc---------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHH
Confidence 99998876543 3667999999999999999999999988762 56677778889998888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010 250 LDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM 288 (664)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (664)
.+.....| -++....++.-.|+.++..+++.+.
T Consensus 396 ~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 396 AKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 87777664 2455556666778888888887653
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.13 E-value=0.072 Score=33.47 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHhhhcCC
Q 006010 509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEP 538 (664)
Q Consensus 509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (664)
++..+..+|...|++++|+++|+++++..|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 344455555555555555555555544333
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.04 E-value=0.083 Score=33.20 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 006010 120 SFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSV 160 (664)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 160 (664)
++..+...|.+.|++++|+++|+++++. .+.+...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHHh
Confidence 4555566666666666666666666554 33444444433
No 262
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.95 E-value=1.9 Score=36.11 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=19.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010 240 ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMF 289 (664)
Q Consensus 240 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 289 (664)
.|.+++.....+-+...+-+.-...-..|.-+-.+.|++..|.+.|..+.
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 44444444444443333322222223333333344444444444444443
No 263
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.91 E-value=0.74 Score=38.41 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=77.9
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCcCH-HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHh-HHHHHH--HHHHHc
Q 006010 482 LCEDGKLREARMVWTQMLSRGCKPDV-VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVF-TYNILL--NALCKQ 557 (664)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~--~~~~~~ 557 (664)
+++.+..++|+.-|.++.+.|...-+ -....+.......|+...|...|+++ -.....|-.. -...|= ..+...
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdei--a~dt~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEI--AADTSIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHH--hccCCCcchhhHHHHHHHHHHHhcc
Confidence 56778889999999999887643222 22333445567789999999999988 3322223222 111121 235677
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 558 SNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 558 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
|.+++...-.+-+...+ .++....+ +.|+..-.+.|++.+|.+.|.++...
T Consensus 146 gsy~dV~srvepLa~d~-----n~mR~sAr----------------EALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 146 GSYDDVSSRVEPLAGDG-----NPMRHSAR----------------EALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred ccHHHHHHHhhhccCCC-----ChhHHHHH----------------HHHhHHHHhccchHHHHHHHHHHHcc
Confidence 88887777666654322 12222211 23555588999999999999998765
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.85 E-value=2.6 Score=39.37 Aligned_cols=154 Identities=13% Similarity=0.033 Sum_probs=102.3
Q ss_pred HHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCH----HHHHHHHHHHHh
Q 006010 164 IIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDI----YTYCTLMDGLCK 239 (664)
Q Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 239 (664)
+.-.|++.+|...++++++ ..+-|...++..=.++.-+|+.+.-...++.+...- .+|. +....+.-++..
T Consensus 113 ~~~~g~~h~a~~~wdklL~----d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLD----DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhccccccHHHHHHHHHHH----hCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHH
Confidence 3456888888888888887 255577788888888888999888888888876541 2333 233334445567
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChHHH
Q 006010 240 ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK---GCLPNEVTYNTLIHGLCLKGNLDKA 316 (664)
Q Consensus 240 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~a 316 (664)
+|-+++|++.-++..+.+ +-|...-.++...+-.+|++.++.+.+.+-... +--.-...|-...-.+...+.++.|
T Consensus 188 ~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred hccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 899999999888887765 346666777788888889999988887654221 0000111222233344555777777
Q ss_pred HHHHHHH
Q 006010 317 VSLLDRM 323 (664)
Q Consensus 317 ~~~~~~~ 323 (664)
+++|+.-
T Consensus 267 leIyD~e 273 (491)
T KOG2610|consen 267 LEIYDRE 273 (491)
T ss_pred HHHHHHH
Confidence 7777643
No 265
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.69 E-value=2.1 Score=35.43 Aligned_cols=124 Identities=17% Similarity=0.204 Sum_probs=60.7
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHc
Q 006010 88 SLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQE 167 (664)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (664)
.++..+...+.+..+...++.+...+. .+....+.++..|++.+ .++.++.+.. ..+......+++.|.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHHc
Confidence 345555555566666666666665542 45556666666665542 2333333331 11122233455555666
Q ss_pred CCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhc-CChhHHHHHHhhcccCCCCCCHHHHHHHHHHHH
Q 006010 168 GLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRL-GLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLC 238 (664)
Q Consensus 168 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (664)
+.++++.-++.++.. +...+..+... ++++.|.+.+.+-. +...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~------------~~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN------------FKDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC------------HHHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHHH
Confidence 666666666655422 22233333333 55666666555421 3445555554443
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.51 E-value=4.4 Score=38.34 Aligned_cols=164 Identities=13% Similarity=0.102 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010 404 VYSALIDGLCRVGKPD---EAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIH 480 (664)
Q Consensus 404 ~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 480 (664)
++..++.+|...+..+ +|..+++.+... .+..+.++..-+..+.+.++.+.+.+.+.+|...- ......+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 4555666666665543 445555555443 23334555555666666777777777777777643 112333443333
Q ss_pred HH---HcCCChHHHHHHHHHHHhCCCCcCHHhHH--HHHH-HH--HHcC------CHHHHHHHHHHhhhcCCCCCCCHhH
Q 006010 481 GL---CEDGKLREARMVWTQMLSRGCKPDVVAYS--SMIH-GL--CNAG------SVEEALKLFNEMLCLEPKSQPDVFT 546 (664)
Q Consensus 481 ~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~-~~--~~~g------~~~~A~~~~~~~~~~~~~~~~~~~~ 546 (664)
.+ .. .....|...+..++...+.|....|. .++. .+ .+.+ .++....+++.+. ...+.+.+..+
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~-~~~~~~ls~~~ 241 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVE-HSLGKQLSAEA 241 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHH-HHhcCCCCHHH
Confidence 33 22 23445666666665544454443111 1111 11 1111 1444444555331 11222223322
Q ss_pred HH---HHH----HHHHHcCChhHHHHHHHHHH
Q 006010 547 YN---ILL----NALCKQSNISHSIDLLNSMM 571 (664)
Q Consensus 547 ~~---~l~----~~~~~~g~~~~A~~~~~~~~ 571 (664)
-. +++ ..+.+.++|++|.++|+-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 222 34567899999999998654
No 267
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.50 E-value=1.9 Score=37.57 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010 263 VTFNVLINGLCKNGELGRAAKLVDNMFLK 291 (664)
Q Consensus 263 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (664)
.||--|...+...|+.++|..+|+-....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 35555666666666666666666665544
No 268
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.45 E-value=2.4 Score=35.07 Aligned_cols=125 Identities=15% Similarity=0.118 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 006010 406 SALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCED 485 (664)
Q Consensus 406 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 485 (664)
..++..+...+.+.....+++.+...+ +.+....+.++..|++.+ ..+..+.++. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 345555555666677777777766665 355666666777666542 2333333331 12223334455666666
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc-CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHH
Q 006010 486 GKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA-GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALC 555 (664)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 555 (664)
+.++++.-++.++-. +...+..+... ++++.|.+++.+. + +...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~-----~---~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ-----N---NPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC-----C---CHHHHHHHHHHHH
Confidence 666666666655421 11122222223 6677777766543 1 4456666665544
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.20 E-value=6.7 Score=39.20 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006010 369 IYSTLISGLFKEGKAEDAMKLWKQMMEKGCK-PNTVVYSALIDGLCRVGKPDEAEEILFEMIN 430 (664)
Q Consensus 369 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 430 (664)
+-..+..++-+.|+.++|++.+++|.+.... ........|+.++...+.+.++..++.+.-+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3344555566677777777777777654221 2333555677777777777777777766544
No 270
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.17 E-value=2.3 Score=33.79 Aligned_cols=140 Identities=17% Similarity=0.154 Sum_probs=73.5
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCCh
Q 006010 129 GKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLV 208 (664)
Q Consensus 129 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 208 (664)
.-.|..++..++..+... +.+..-+|.++--....-+-+-..+.++.+-+. -|.. ..|+.
T Consensus 13 ildG~V~qGveii~k~v~----Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGki------FDis----------~C~Nl 72 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVN----SSNIKEYNWVICNIIDAADCDYVVETLDSIGKI------FDIS----------KCGNL 72 (161)
T ss_dssp HHTT-HHHHHHHHHHHHH----HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG------S-GG----------G-S-T
T ss_pred HHhchHHHHHHHHHHHcC----cCCccccceeeeecchhhchhHHHHHHHHHhhh------cCch----------hhcch
Confidence 345777777887777754 234445555555555554545555555554320 1111 22333
Q ss_pred hHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010 209 DNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM 288 (664)
Q Consensus 209 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (664)
......+-.+-. +.......+..+...|+-++-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.
T Consensus 73 KrVi~C~~~~n~-----~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 73 KRVIECYAKRNK-----LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp HHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 444333332221 2344555666777777777777777776642 2566777777777888888888888888877
Q ss_pred HHcCCC
Q 006010 289 FLKGCL 294 (664)
Q Consensus 289 ~~~g~~ 294 (664)
-+.|++
T Consensus 147 CekG~k 152 (161)
T PF09205_consen 147 CEKGLK 152 (161)
T ss_dssp HHTT-H
T ss_pred HHhchH
Confidence 777753
No 271
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.07 E-value=12 Score=41.65 Aligned_cols=134 Identities=25% Similarity=0.312 Sum_probs=79.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006010 372 TLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVV----YSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGF 447 (664)
Q Consensus 372 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 447 (664)
..++.--+.|.+.+|+.++ .|+... |.+..+.+...+.+++|.-.|+..-+. .-.+.+|
T Consensus 913 e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~ 975 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAY 975 (1265)
T ss_pred HHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHH
Confidence 3334444555566665554 344443 444445555667777777666654322 2345677
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHH
Q 006010 448 FESGKGHKAVEIWKDMAKNNCVYNEVC--YSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEE 525 (664)
Q Consensus 448 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 525 (664)
..+|++++|+.+..++.. ..+... -..|+.-+...+++-+|-++..+... .|. -.+..+++...+++
T Consensus 976 ~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~-----~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS---DPE-----EAVALLCKAKEWEE 1044 (1265)
T ss_pred HHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---CHH-----HHHHHHhhHhHHHH
Confidence 778888888887776643 222222 25677777888888888888777664 222 22344566666777
Q ss_pred HHHHHHHh
Q 006010 526 ALKLFNEM 533 (664)
Q Consensus 526 A~~~~~~~ 533 (664)
|.++....
T Consensus 1045 Alrva~~~ 1052 (1265)
T KOG1920|consen 1045 ALRVASKA 1052 (1265)
T ss_pred HHHHHHhc
Confidence 77766554
No 272
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.87 E-value=4.5 Score=38.42 Aligned_cols=128 Identities=10% Similarity=0.194 Sum_probs=56.5
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHH--cC----CHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCC---
Q 006010 137 AIRLFHTMVDEFHCKRTVKSFNSVLNVIIQ--EG----LYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGL--- 207 (664)
Q Consensus 137 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--- 207 (664)
.+.+++.+ ...|...+..++.+....... .. ...+|..+|+.|.+..+.--.++...+..++.. ..++
T Consensus 81 ~~~~y~~L-~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 81 VLDIYEKL-KEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHH-HHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 34455555 344455554444332222221 11 244577777777765443334455555555433 2222
Q ss_pred -hhHHHHHHhhcccCCCCCCHH--HHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHHHHHH
Q 006010 208 -VDNAIQLFREMPVRNCEPDIY--TYCTLMDGLCKENR--LDEAVLLLDEMQVDGCFPTPVTFNV 267 (664)
Q Consensus 208 -~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~ 267 (664)
.+.+..+|+.+...|+..+-. ....++........ ..++.++++.+.+.|+++....|..
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 234455555555544443221 22222222211111 2345555666666655555444443
No 273
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.61 E-value=0.73 Score=41.71 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 006010 225 PDIYTYCTLMDGLCK-----ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVT 299 (664)
Q Consensus 225 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 299 (664)
.|-.+|.+.+..+.. .+..+-....++.|.+.|+..|..+|+.|++.+-+..- .|. ..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HH
Confidence 355556555555543 23444455566777777777777788777766543211 111 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 006010 300 YNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGR 347 (664)
Q Consensus 300 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 347 (664)
+....-.|-+ +-+=+++++++|...|+.||..+-..+++++.+.+-
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111111 112355566666666666666666666666655443
No 274
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.28 E-value=5.8 Score=35.47 Aligned_cols=211 Identities=13% Similarity=0.118 Sum_probs=110.4
Q ss_pred CCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHH
Q 006010 79 YQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFN 158 (664)
Q Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 158 (664)
+.--...|..-..+|....+|+.|...+..+.+.. +-+. .+..... -++.|.-+.+++.+ .+.-+..++
T Consensus 27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~~y-Ennr-slfhAAK------ayEqaamLake~~k---lsEvvdl~e 95 (308)
T KOG1585|consen 27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNR-SLFHAAK------AYEQAAMLAKELSK---LSEVVDLYE 95 (308)
T ss_pred chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-Hhcc-cHHHHHH------HHHHHHHHHHHHHH---hHHHHHHHH
Confidence 33345567777778888888888888777666321 1111 2222222 24555555555532 233345666
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccC---C--CCCCHHHHHHH
Q 006010 159 SVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVR---N--CEPDIYTYCTL 233 (664)
Q Consensus 159 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~l 233 (664)
.-...|..+|..+.|-..+++.-+. .+..+++.|+++|++.... + ...-...+...
T Consensus 96 KAs~lY~E~GspdtAAmaleKAak~-------------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 96 KASELYVECGSPDTAAMALEKAAKA-------------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHH-------------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 7777788888888777777766441 1223333444444332210 0 00112234444
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCCHHHHHHHHH
Q 006010 234 MDGLCKENRLDEAVLLLDEMQVD----GCFPTP-VTFNVLINGLCKNGELGRAAKLVDNMFLKGC---LPNEVTYNTLIH 305 (664)
Q Consensus 234 ~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~---~p~~~~~~~l~~ 305 (664)
.+++.+..++++|-..+.+-... .--++. ..|-..|-.+.-..|+..|.+.++.--+.+- .-+..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 55666666666665544432211 001121 2344555556666788888888877443321 123455666666
Q ss_pred HHHhcCChHHHHHHH
Q 006010 306 GLCLKGNLDKAVSLL 320 (664)
Q Consensus 306 ~~~~~g~~~~a~~~~ 320 (664)
+| ..|+.+++.+++
T Consensus 237 ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVL 250 (308)
T ss_pred Hh-ccCCHHHHHHHH
Confidence 65 456666655543
No 275
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.21 E-value=0.58 Score=42.33 Aligned_cols=69 Identities=20% Similarity=0.307 Sum_probs=34.1
Q ss_pred hhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcC----------------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006010 208 VDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKEN----------------RLDEAVLLLDEMQVDGCFPTPVTFNVLING 271 (664)
Q Consensus 208 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 271 (664)
++-....++.|.+.|+..|..+|+.|++.+=+.. +-+=+++++++|...|+.||..+-..|+++
T Consensus 88 veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~ 167 (406)
T KOG3941|consen 88 VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNA 167 (406)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 3333344555666666666666666665543321 112244455555555555555555555555
Q ss_pred HHhcC
Q 006010 272 LCKNG 276 (664)
Q Consensus 272 ~~~~g 276 (664)
+.+.+
T Consensus 168 FGr~~ 172 (406)
T KOG3941|consen 168 FGRWN 172 (406)
T ss_pred hcccc
Confidence 44433
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.11 E-value=0.12 Score=30.65 Aligned_cols=25 Identities=12% Similarity=0.008 Sum_probs=17.1
Q ss_pred HHHHHHHhcccchHHHHHHHHHhhh
Q 006010 638 WERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
|..|+..|.+.|++++|+++|++.|
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667777777777777777777743
No 277
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.09 E-value=13 Score=39.91 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=23.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006010 233 LMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKN 275 (664)
Q Consensus 233 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 275 (664)
++-.|.++|++++|.++..+.... .......+-..+..|...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 344566778888887777444332 233445556666666654
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.02 E-value=1.2 Score=41.27 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 006010 509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD-----RGCDPDLVTCN 583 (664)
Q Consensus 509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 583 (664)
++..++..+...|+++.+...+++.+..++- +...|..++.+|.+.|+...|+..|+++.+ .|+.|......
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~---~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY---DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 5666777777788888888888887655544 667788888888888888888888877764 47777777665
Q ss_pred HHHHh
Q 006010 584 IFLTA 588 (664)
Q Consensus 584 ~ll~~ 588 (664)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55555
No 279
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.02 E-value=11 Score=37.76 Aligned_cols=91 Identities=12% Similarity=0.118 Sum_probs=65.8
Q ss_pred HHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHhh
Q 006010 67 DEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHL-VEEAIRLFHTMV 145 (664)
Q Consensus 67 ~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 145 (664)
..+|+.+.. .|+.++..|...+..+-+.+.+.+...+|..|+...+ .++..|..-+.....-+. ++.|..+|.+.+
T Consensus 91 v~lyr~at~--rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp-~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 91 VFLYRRATN--RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHP-NNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHH--hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 345555543 3567889999999999999999999999999998764 366777776666555444 899999999887
Q ss_pred hcCCCCCCHHHHHHHHH
Q 006010 146 DEFHCKRTVKSFNSVLN 162 (664)
Q Consensus 146 ~~~~~~~~~~~~~~l~~ 162 (664)
+. ++.++..|-...+
T Consensus 168 R~--npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 168 RF--NPDSPKLWKEYFR 182 (568)
T ss_pred hc--CCCChHHHHHHHH
Confidence 65 3444555554444
No 280
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.97 E-value=3.9 Score=32.60 Aligned_cols=140 Identities=16% Similarity=0.214 Sum_probs=78.4
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 006010 413 CRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREAR 492 (664)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 492 (664)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+. .|. ...|+.....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHH
Confidence 4467778888888777764 24555555555444444444455555544331 222 1233333333
Q ss_pred HHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 493 MVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 493 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
..+-.+ ..+.......+..+...|+-++-.+++.++. . ...+++...-.+..+|.+.|+..++-++++++-+
T Consensus 77 ~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~--k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 77 ECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELK--K-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHh--h-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 333221 1233445556677788888888888888873 2 3556777888888999999999999999999988
Q ss_pred CCCC
Q 006010 573 RGCD 576 (664)
Q Consensus 573 ~~~~ 576 (664)
.|++
T Consensus 149 kG~k 152 (161)
T PF09205_consen 149 KGLK 152 (161)
T ss_dssp TT-H
T ss_pred hchH
Confidence 7764
No 281
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=2.1 Score=38.01 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCCH-hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010 521 GSVEEALKLFNEMLCLEPKSQPDV-FTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA 588 (664)
Q Consensus 521 g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 588 (664)
..++.|+..|.+++. ..|+. ..|+.-+.++.+..+++.+..--.+.++ +.||.+.-..+++.
T Consensus 24 k~y~~ai~~y~raI~----~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~ 86 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAIC----INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQ 86 (284)
T ss_pred hhhchHHHHHHHHHh----cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHH
Confidence 344455555544443 22222 2333444444455555555554444444 45555444444444
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.73 E-value=1.3 Score=38.42 Aligned_cols=103 Identities=13% Similarity=0.080 Sum_probs=60.1
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006010 508 VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPD--VFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIF 585 (664)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 585 (664)
..+..++..|++.|+.++|.+.|.++ .+....+. ...+-.+++.....|++..+...+.++...-..+.......-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~--~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRA--RDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH--hhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 45667777788888888888888877 33332222 334556667777778888877777776643222222222222
Q ss_pred HHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHH
Q 006010 586 LTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQ 628 (664)
Q Consensus 586 l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (664)
+..+ -|..+...|++.+|-+.|-....
T Consensus 115 lk~~----------------~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 115 LKVY----------------EGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHH----------------HHHHHHHhchHHHHHHHHHccCc
Confidence 2221 11225667788888777766543
No 283
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.64 E-value=20 Score=40.02 Aligned_cols=110 Identities=16% Similarity=0.188 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHH
Q 006010 369 IYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAF--TYSSLMKG 446 (664)
Q Consensus 369 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~ 446 (664)
.|.+...-+.+...+++|.-.|+..-+. .-.+.+|...|+|.+|..+..++... .+.. +-..|+.-
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSR 1008 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHH
Confidence 3344444455667777777777654321 23466777788888888877766432 1222 22456666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 006010 447 FFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQM 498 (664)
Q Consensus 447 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (664)
+...++.-+|-++....... ....+..|++...+++|..+-...
T Consensus 1009 L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 67777777777776665431 122344556666667766655443
No 284
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.63 E-value=2.6 Score=35.82 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 006010 523 VEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS-----------NISHSIDLLNSMMDRGCDPDLVTCNIFLTAL 589 (664)
Q Consensus 523 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 589 (664)
+++|+.=|++++.++|. ...++..+..+|...+ .+++|.+.|+++.+ ..|+...|+.-+..+
T Consensus 51 iedAisK~eeAL~I~P~---~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPN---KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 34455555555544443 3344555555554322 25566677777776 688888888877764
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.53 E-value=0.15 Score=29.81 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=13.2
Q ss_pred CHhHHHHHHHHHHHcCChhHHH
Q 006010 543 DVFTYNILLNALCKQSNISHSI 564 (664)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~A~ 564 (664)
|...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5556666666666666666554
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.52 E-value=1.9 Score=37.34 Aligned_cols=101 Identities=14% Similarity=0.036 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHH
Q 006010 118 EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKR--TVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTF 195 (664)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 195 (664)
...+..++..|.+.|+.++|++.|.++.+. ...+ -...+..+++.....+++..+.....++......+-.++...-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 346778899999999999999999998543 2122 2456788888888999999988888887653222211111111
Q ss_pred HHHHH--HHHhcCChhHHHHHHhhcc
Q 006010 196 NLVIK--TVCRLGLVDNAIQLFREMP 219 (664)
Q Consensus 196 ~~ll~--~~~~~g~~~~A~~~~~~~~ 219 (664)
-.+.. .+...+++..|-+.|-+..
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccC
Confidence 11111 2234678888887776664
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.08 E-value=0.37 Score=28.55 Aligned_cols=26 Identities=27% Similarity=0.618 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHH
Q 006010 156 SFNSVLNVIIQEGLYHRALEFYNHIV 181 (664)
Q Consensus 156 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 181 (664)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777744
No 288
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.90 E-value=9.5 Score=34.59 Aligned_cols=199 Identities=22% Similarity=0.134 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 006010 333 VTYGTIINGLVKLGRAVDGARVLMSMEER-KFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALID- 410 (664)
Q Consensus 333 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~- 410 (664)
..+......+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444555555556666555555554431 122234444455555555556666666666665543222 111122222
Q ss_pred HHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCC
Q 006010 411 GLCRVGKPDEAEEILFEMINNGC--AANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVY-NEVCYSVLIHGLCEDGK 487 (664)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 487 (664)
.+...|+++.+...+........ ......+......+...++.+.+...+....... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 55666667777776666644211 0122333333333555666666666666666543 22 34555556666666666
Q ss_pred hHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 006010 488 LREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLC 535 (664)
Q Consensus 488 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (664)
+++|...+...... .|+ ...+..+...+...+..+++...+.+.+.
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67777766666653 232 33333444444455566777766666643
No 289
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.85 E-value=0.51 Score=27.38 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=11.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhh
Q 006010 510 YSSMIHGLCNAGSVEEALKLFNEML 534 (664)
Q Consensus 510 ~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (664)
|..++.+|...|++++|+..|++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 4444444444444444444444443
No 290
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.69 E-value=0.44 Score=27.64 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006010 545 FTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD 578 (664)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 578 (664)
..|..+..+|...|++++|+..++++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4688899999999999999999999998 5665
No 291
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.65 E-value=1.9 Score=37.38 Aligned_cols=76 Identities=13% Similarity=0.003 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCC-CCCHhHHHHHHHHHHHcCChhHHH
Q 006010 488 LREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKS-QPDVFTYNILLNALCKQSNISHSI 564 (664)
Q Consensus 488 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 564 (664)
-++|.+.|-.+...+.--++.....++..|. ..+.+++..++.++++..... .+|+..+..|+..+.+.|+++.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3567777777776665445555555555554 678888888888887766555 788888888888888888888774
No 292
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.63 E-value=2.2 Score=39.61 Aligned_cols=71 Identities=17% Similarity=0.311 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh-----CCCCcCHHhHH
Q 006010 440 YSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLS-----RGCKPDVVAYS 511 (664)
Q Consensus 440 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 511 (664)
+..++..+...|+.+.+.+.++++.... +.+...|..++.+|...|+...|+..|+.+.+ .|+.|...+..
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3444444555555555555555555444 34445555555555555555555555554433 34555544443
No 293
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.27 E-value=9.7 Score=33.44 Aligned_cols=183 Identities=16% Similarity=0.109 Sum_probs=102.3
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC-HHHHHHHHHHHHhcC
Q 006010 128 YGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN-TLTFNLVIKTVCRLG 206 (664)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g 206 (664)
|-..|-+.-|+.-|.+.+.- .|.-+..||.+.--+...|+++.|.+.|+...+ ..|. ..+...-.-++.--|
T Consensus 75 YDSlGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E-----LDp~y~Ya~lNRgi~~YY~g 147 (297)
T COG4785 75 YDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE-----LDPTYNYAHLNRGIALYYGG 147 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc-----cCCcchHHHhccceeeeecC
Confidence 33445555566666655443 233456788888888888888888888888877 3332 222222222333468
Q ss_pred ChhHHHHHHhhcccCCCCCCHH--HHHHHHHHHHhcCChhHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006010 207 LVDNAIQLFREMPVRNCEPDIY--TYCTLMDGLCKENRLDEAVLLL-DEMQVDGCFPTPVTFNVLINGLCKNGELGRAAK 283 (664)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 283 (664)
++.-|.+-|...-+.+ +.|+. .|.-+. -..-++.+|..-+ ++... .|..-|...|-.|.- |++. ...
T Consensus 148 R~~LAq~d~~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~ 217 (297)
T COG4785 148 RYKLAQDDLLAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EET 217 (297)
T ss_pred chHhhHHHHHHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHH
Confidence 8888877766655543 33332 222222 2334556665433 33333 355555544433322 2211 112
Q ss_pred HHHHHHHcCC------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006010 284 LVDNMFLKGC------LPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASK 327 (664)
Q Consensus 284 ~~~~~~~~g~------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (664)
+++++....- ..=..||--+...+...|+.++|..+|+-.....
T Consensus 218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2333222110 0124688899999999999999999999888763
No 294
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.67 E-value=20 Score=36.02 Aligned_cols=184 Identities=10% Similarity=0.112 Sum_probs=114.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHH
Q 006010 434 AANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSM 513 (664)
Q Consensus 434 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 513 (664)
+.|.....+++..+.......-...+..+|..-| .+-..|..++.+|... ..++-..+|+++.+..+. |.+.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4566677788888888888888888888888866 6777888899999888 667888899988886432 33333444
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhcCCCCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHhh
Q 006010 514 IHGLCNAGSVEEALKLFNEMLCLEPKSQPD---VFTYNILLNALCKQSNISHSIDLLNSMMDR-GCDPDLVTCNIFLTAL 589 (664)
Q Consensus 514 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~ 589 (664)
+..|.+ ++.+.+..+|.+++-.--..+-+ ...|..+... -..+.+....+.+++... |..--.+.+..+...
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~- 214 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK- 214 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH-
Confidence 444544 88888888888874211000001 1134443321 123455555555555532 222222333333333
Q ss_pred hhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhc
Q 006010 590 KEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELC 646 (664)
Q Consensus 590 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 646 (664)
|....+|++|++++..+.+. -..|...-..++..+.
T Consensus 215 --------------------Ys~~eN~~eai~Ilk~il~~-d~k~~~ar~~~i~~lR 250 (711)
T COG1747 215 --------------------YSENENWTEAIRILKHILEH-DEKDVWARKEIIENLR 250 (711)
T ss_pred --------------------hccccCHHHHHHHHHHHhhh-cchhhhHHHHHHHHHH
Confidence 88899999999999988875 2335444455555443
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.61 E-value=0.79 Score=26.46 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=11.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhh
Q 006010 510 YSSMIHGLCNAGSVEEALKLFNEML 534 (664)
Q Consensus 510 ~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (664)
|..+...+...|++++|++.|++++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444444445555555444443
No 296
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.34 E-value=27 Score=36.96 Aligned_cols=178 Identities=12% Similarity=0.022 Sum_probs=97.0
Q ss_pred hhHHHHHHhhcccCCCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhc
Q 006010 208 VDNAIQLFREMPVRNCEPDIYTYCTLMDG-----LCKENRLDEAVLLLDEMQV-------DGCFPTPVTFNVLINGLCKN 275 (664)
Q Consensus 208 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~ 275 (664)
...|.++++...+.| +......+..+ +....+.+.|+..|+.+.. .| .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 457888888887776 33333333322 3356788888888888766 44 233455566666653
Q ss_pred C-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----c
Q 006010 276 G-----ELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL-KGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVK----L 345 (664)
Q Consensus 276 g-----~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~ 345 (664)
. +.+.|..++.+....|. |+.......+..... ..+...|.++|...-..| ....+..+..+|.. .
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCcC
Confidence 3 55668888877776653 243332222222221 245677888888887776 22233333333322 2
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006010 346 GRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKG 397 (664)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 397 (664)
.+...|..++.+..+.|.. ....-...+..+.. +.++.+.-.+..+.+.|
T Consensus 378 r~~~~A~~~~k~aA~~g~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNP-SAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHccCh-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 3566777777777776622 22222222222333 55666655555555544
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.33 E-value=0.65 Score=26.83 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006010 545 FTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD 578 (664)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 578 (664)
..|..+...+...|++++|++.+++.++ +.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 3577888999999999999999999997 5554
No 298
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.98 E-value=29 Score=36.75 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc----CChhHHHHHHHHHHHCC
Q 006010 522 SVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ----SNISHSIDLLNSMMDRG 574 (664)
Q Consensus 522 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~ 574 (664)
+.+.+...+.+. ...+ +......+.+.|..- .+++.|...+......+
T Consensus 454 ~~~~~~~~~~~a--~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 454 TLERAFSLYSRA--AAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred chhHHHHHHHHH--Hhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 345555555555 2233 444444444444322 24666777666666543
No 299
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.57 E-value=12 Score=31.78 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=14.1
Q ss_pred hcccCCCCCCHHHHHHHHHHHHhcCChh
Q 006010 217 EMPVRNCEPDIYTYCTLMDGLCKENRLD 244 (664)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 244 (664)
.+.+.+++|+...+..+++.+.+.|++.
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3334444555555555555555555443
No 300
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.55 E-value=12 Score=31.77 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=13.7
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006010 287 NMFLKGCLPNEVTYNTLIHGLCLKGNLD 314 (664)
Q Consensus 287 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 314 (664)
.+...++.|+...+..++..+.+.|++.
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3334445555555555555555555433
No 301
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.50 E-value=4.5 Score=41.12 Aligned_cols=44 Identities=30% Similarity=0.221 Sum_probs=21.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010 239 KENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM 288 (664)
Q Consensus 239 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (664)
+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|...
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 4455555544443322 3344555555555555555555555443
No 302
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.47 E-value=34 Score=36.84 Aligned_cols=184 Identities=11% Similarity=0.147 Sum_probs=94.7
Q ss_pred HHHHHHHhhhcCCCCCC--HHHHHHHHHHHH-HcCCHhHHHHHHHHHHhcccCCCCcCHH-----HHHHHHHHHHhcCCh
Q 006010 137 AIRLFHTMVDEFHCKRT--VKSFNSVLNVII-QEGLYHRALEFYNHIVNAKHMNILPNTL-----TFNLVIKTVCRLGLV 208 (664)
Q Consensus 137 A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~g~~ 208 (664)
|++-++.+.+....+|. +.++.-++..+. ...+++.|...+++....... ++.. ....++..+.+.+..
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~---~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER---HRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHhcCHH
Confidence 55555555444444443 335556666666 556788888888776442111 2211 223445555555544
Q ss_pred hHHHHHHhhcccC----CCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hcCCh
Q 006010 209 DNAIQLFREMPVR----NCEPDIYTYCTL-MDGLCKENRLDEAVLLLDEMQVDG---CFPTPVTFNVLINGLC--KNGEL 278 (664)
Q Consensus 209 ~~A~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~g~~ 278 (664)
. |...+++..+. +..+-...|..+ +..+...++...|.+.++.+...- ..|-..++-.++.+.. ..+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 4 77777665432 111223333333 333333468888888877765432 2333444444444433 34555
Q ss_pred hHHHHHHHHHHHcC---------CCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHH
Q 006010 279 GRAAKLVDNMFLKG---------CLPNEVTYNTLIHGLC--LKGNLDKAVSLLDRMV 324 (664)
Q Consensus 279 ~~a~~~~~~~~~~g---------~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 324 (664)
+++.+.++++.... ..|-..+|..++..++ ..|+++.+.+.++++.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666653321 1234456666665443 4667666666665554
No 303
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.44 E-value=0.62 Score=27.16 Aligned_cols=24 Identities=21% Similarity=0.549 Sum_probs=12.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHH
Q 006010 151 KRTVKSFNSVLNVIIQEGLYHRAL 174 (664)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~A~ 174 (664)
|.++.+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344555555555555555555543
No 304
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.40 E-value=0.046 Score=45.73 Aligned_cols=83 Identities=10% Similarity=0.095 Sum_probs=43.7
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC
Q 006010 479 IHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS 558 (664)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 558 (664)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---------SSS-CTHHHHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---------cccCHHHHHHHHHhcc
Confidence 4445555666666666666665443444555666666666665555555555422 1112234455555666
Q ss_pred ChhHHHHHHHHH
Q 006010 559 NISHSIDLLNSM 570 (664)
Q Consensus 559 ~~~~A~~~~~~~ 570 (664)
.+++|.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 666666655554
No 305
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.40 E-value=4 Score=35.19 Aligned_cols=93 Identities=18% Similarity=0.148 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHH-----HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010 512 SMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILL-----NALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFL 586 (664)
Q Consensus 512 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 586 (664)
.=.+-+.+.|++++|..-|..++..-+. ...-...++ .++.+.+.++.|+.-..+.++ +.|...- .+.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~---~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~k--Al~ 172 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPS---TSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEK--ALE 172 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCcc---ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHH--HHH
Confidence 3466678889999999999999643222 111222222 245678889999888888887 5553221 122
Q ss_pred HhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 587 TALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
+ -+.+|.+...+++|++-|+++++.
T Consensus 173 R------------------RAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 173 R------------------RAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred H------------------HHHHHHhhhhHHHHHHHHHHHHHh
Confidence 2 122388899999999999999874
No 306
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.80 E-value=18 Score=32.88 Aligned_cols=173 Identities=13% Similarity=0.104 Sum_probs=90.2
Q ss_pred CCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C
Q 006010 362 KFHVNEYIYSTLISG-LFKEGKAEDAMKLWKQMMEKGCKPN---TVVYSALIDGLCRVGKPDEAEEILFEMINN-----G 432 (664)
Q Consensus 362 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~ 432 (664)
+..||+..-|..-.+ -.+...+++|+.-|++..+...... ..++..++....+.+++++..+.+.+++.- .
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345555544433222 1234467888888888776532222 334455667777888888888877776531 0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCc--
Q 006010 433 CAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNN-CVYNE----VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKP-- 505 (664)
Q Consensus 433 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-- 505 (664)
-..+..+.+.+++....+.+.+-..++++.-.+.- -..+. .+-..+...|...|.+.+..++++++....-..
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 12344556666666666666655555555433210 00111 122345556666666666666666665442111
Q ss_pred --C-------HHhHHHHHHHHHHcCCHHHHHHHHHHhh
Q 006010 506 --D-------VVAYSSMIHGLCNAGSVEEALKLFNEML 534 (664)
Q Consensus 506 --~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (664)
| ...|..-+..|....+-..-..+|++.+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 1 1233334444555555555555555554
No 307
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.66 E-value=15 Score=31.79 Aligned_cols=129 Identities=12% Similarity=0.106 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhH----
Q 006010 437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYS--VLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAY---- 510 (664)
Q Consensus 437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---- 510 (664)
...|..++.... .+.. +.....+.+...........+. .+...+...|++++|...++..+.. |....+
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 344555555443 2333 4444444454432111111222 2345667788888888888777653 222222
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006010 511 -SSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRG 574 (664)
Q Consensus 511 -~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 574 (664)
..|.......|.+|+|...++.. .+++. .......-.+.+...|+-++|..-|++.++.+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~--~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTI--KEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcc--ccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 33455667778888888888766 22221 11123334467778888888888888887653
No 308
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.64 E-value=4.6 Score=34.38 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=58.8
Q ss_pred cchHHHHHHHHHhCCCCcCHHHHHHHHHHHHh---c-------CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcC
Q 006010 99 FKSLEMVLYRMRREKRVVLEKSFIFIFKAYGK---A-------HLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEG 168 (664)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~-------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (664)
|+.|++.++.....++. +...++.-..++.. . ..+++|+.-|+..+.. .|....++..+..++...+
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 44555555555544533 44444433333222 2 3456666666666553 2333467777777776543
Q ss_pred -----------CHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccC
Q 006010 169 -----------LYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVR 221 (664)
Q Consensus 169 -----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 221 (664)
.|++|...|++... ..|+...|+.-+.... +|-+++.++.+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~-----~~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD-----EDPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH-----H-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 25667777777766 5688888888777653 355555555444
No 309
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.36 E-value=40 Score=36.28 Aligned_cols=194 Identities=14% Similarity=0.022 Sum_probs=92.9
Q ss_pred HhcCChHHHHHHHHHHHHCCC--CC----CHHHHHHHH--HHHHcCCChHHHHHHHH--------HHHhCCCCcCHHhHH
Q 006010 448 FESGKGHKAVEIWKDMAKNNC--VY----NEVCYSVLI--HGLCEDGKLREARMVWT--------QMLSRGCKPDVVAYS 511 (664)
Q Consensus 448 ~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~~l~--~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~ 511 (664)
+-.+++..|....+.+..... ++ ....+..++ -.+-..|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 446788888888888776321 11 112222222 23345789999999997 444444444433333
Q ss_pred H--HHHHHHHcC--CHHH--HHHHHHHhhhcCCCCCC--CHhHHHHHH-HHHHHcC--ChhHHHHHHHHHHHCC--CCCC
Q 006010 512 S--MIHGLCNAG--SVEE--ALKLFNEMLCLEPKSQP--DVFTYNILL-NALCKQS--NISHSIDLLNSMMDRG--CDPD 578 (664)
Q Consensus 512 ~--l~~~~~~~g--~~~~--A~~~~~~~~~~~~~~~~--~~~~~~~l~-~~~~~~g--~~~~A~~~~~~~~~~~--~~p~ 578 (664)
. ++..+...+ ..++ +..+++.+-.. ....| +..++..++ .++.... ...++...+.+..+.- ...+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n 530 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPL-CSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGN 530 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCcc-ccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhcc
Confidence 2 222222222 2333 77777766211 11222 233444443 3332211 2235555554443311 1111
Q ss_pred HHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCC---ChHHHHHH-----HHHhcccch
Q 006010 579 LVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSP---QTSTWERV-----VQELCRPKR 650 (664)
Q Consensus 579 ~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l-----~~~~~~~g~ 650 (664)
......++ .-++..+. .|+..+..+.........-+. ....|..+ .+.+-..|+
T Consensus 531 ~~l~~~~L-----------------~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~ 592 (608)
T PF10345_consen 531 SQLLAILL-----------------NLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGD 592 (608)
T ss_pred chHHHHHH-----------------HHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCc
Confidence 11111111 12333355 677777666665544331122 44667333 445777899
Q ss_pred HHHHHHHHHh
Q 006010 651 IQAAINKCWS 660 (664)
Q Consensus 651 ~~~A~~~~~~ 660 (664)
.++|.....+
T Consensus 593 ~~ka~~~~~~ 602 (608)
T PF10345_consen 593 RDKAEEARQQ 602 (608)
T ss_pred HHHHHHHHHH
Confidence 9999876554
No 310
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.31 E-value=14 Score=36.84 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=82.7
Q ss_pred HHHHHcCCHHHHHHHHHHhh-hcCCCCCCC-----HhHHHHHHHHHHHcCChhHHHHHHHHHHH-------CCCCCCHHH
Q 006010 515 HGLCNAGSVEEALKLFNEML-CLEPKSQPD-----VFTYNILLNALCKQSNISHSIDLLNSMMD-------RGCDPDLVT 581 (664)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~~~ 581 (664)
+.+.-.|++..|.+++...- ...++...+ -..||.|...+.+.|.+.-+..+|.++.+ .|++|....
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 34556799999999886541 112232222 12357777777888888888888888774 344433210
Q ss_pred HHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhccc
Q 006010 582 CNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRP 648 (664)
Q Consensus 582 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 648 (664)
++. ..+..+.+=..+..|...|+...|.+-|.+.... +..+|..|-.+.++|...
T Consensus 328 --tls---------~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 --TLS---------QNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred --ehh---------cccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 111 1233444556677799999999999999999886 778999999999998654
No 311
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.19 E-value=31 Score=34.78 Aligned_cols=60 Identities=8% Similarity=-0.042 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010 299 TYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEER 361 (664)
Q Consensus 299 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 361 (664)
...+++..+..+..+.-...+..+|+.-| .+...+..++.+|... ..++-..+++++.+.
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 33444444444444444444444444432 2333444444444444 333444444444443
No 312
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.06 E-value=0.017 Score=48.31 Aligned_cols=128 Identities=16% Similarity=0.239 Sum_probs=71.8
Q ss_pred HHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcC
Q 006010 89 LIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEG 168 (664)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (664)
+++.+.+.+.+..+...++.+...+...+....+.++..|++.++.+...++++.. .+ .-...++..|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~-yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NN-YDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SS-S-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cc-cCHHHHHHHHHhcc
Confidence 35556666777777777777776665566777778888888877666666665422 01 22245566666667
Q ss_pred CHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 006010 169 LYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENR 242 (664)
Q Consensus 169 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 242 (664)
.+++|.-+|.++-. +...+..+...++++.|.+.+.+. ++...|..++..+...++
T Consensus 85 l~~~a~~Ly~~~~~------------~~~al~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGN------------HDEALEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTT------------HTTCSSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHccc------------HHHHHHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCc
Confidence 77666666665422 111111123344555555333332 245667777776665544
No 313
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.04 E-value=25 Score=33.50 Aligned_cols=22 Identities=9% Similarity=0.234 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHCCCCCChhhHH
Q 006010 315 KAVSLLDRMVASKCMPNEVTYG 336 (664)
Q Consensus 315 ~a~~~~~~~~~~~~~~~~~~~~ 336 (664)
+...+++.+.+.|+.-+..+|.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~l 101 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYL 101 (297)
T ss_pred HHHHHHHHHHHhccCccChHHH
Confidence 3445555555555555554443
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.03 E-value=41 Score=35.94 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=35.7
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcccCCCCc---CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHH
Q 006010 162 NVIIQEGLYHRALEFYNHIVNAKHMNILP---NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLC 238 (664)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (664)
..+.+.+.+++|+...+.... ..| -.......+..+.-.|++++|-...-.|... +..-|...+..+.
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~-----~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIG-----NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFA 434 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccC-----CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhc
Confidence 344555566666655554422 222 1224445555555556666666555555533 3444444444444
Q ss_pred hcCCh
Q 006010 239 KENRL 243 (664)
Q Consensus 239 ~~g~~ 243 (664)
..+..
T Consensus 435 e~~~l 439 (846)
T KOG2066|consen 435 ELDQL 439 (846)
T ss_pred ccccc
Confidence 44443
No 315
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.97 E-value=15 Score=30.83 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=33.2
Q ss_pred HHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006010 89 LIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVD 146 (664)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 146 (664)
++..-.+.++.+.+..++..+.-..+. ....-..-...+...|+|.+|+.+|+.+..
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344445666777777777666655543 233333344445667777777777777643
No 316
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.91 E-value=7.8 Score=36.09 Aligned_cols=101 Identities=11% Similarity=0.144 Sum_probs=59.0
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006010 327 KCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERK---FHV--NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPN 401 (664)
Q Consensus 327 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 401 (664)
|.+....+...++..-....+++.+...+-++.... ..+ +..++- ..+ -.-+.++++.++..=...|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~i---rll-lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWI---RLL-LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHH---HHH-HccChHHHHHHHhCcchhccccc
Confidence 334444444444444444556666666665554421 111 222222 222 23356677777777777777788
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006010 402 TVVYSALIDGLCRVGKPDEAEEILFEMINN 431 (664)
Q Consensus 402 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 431 (664)
..+++.+|+.+.+.+++.+|..+...|+..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888887777777666554
No 317
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.85 E-value=15 Score=30.79 Aligned_cols=52 Identities=13% Similarity=0.014 Sum_probs=22.8
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010 129 GKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 129 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 182 (664)
.+.++.+++..+++.+.-..+..+...++ -...++..|++.+|..+++.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~--~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLF--DGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHH--HHHHHHHhCCHHHHHHHHHHHhc
Confidence 34455555555555543321112222222 22333455555555555555533
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.62 E-value=1.2 Score=25.45 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010 120 SFIFIFKAYGKAHLVEEAIRLFHTMVDE 147 (664)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 147 (664)
++..++.++.+.|++++|++.|+.+++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455666677777777777777777654
No 319
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.59 E-value=2.9 Score=39.14 Aligned_cols=91 Identities=20% Similarity=0.150 Sum_probs=49.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCH
Q 006010 444 MKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSV 523 (664)
Q Consensus 444 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 523 (664)
.+.|.++|.+++|+..|....... +.|.+++..-..+|.+...+..|..-....+..+ ..-...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 445666666777776666655543 3356666666666666666666655555544321 11123344444444445556
Q ss_pred HHHHHHHHHhhhc
Q 006010 524 EEALKLFNEMLCL 536 (664)
Q Consensus 524 ~~A~~~~~~~~~~ 536 (664)
.+|.+-++.++.+
T Consensus 182 ~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 182 MEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhHHHHHhh
Confidence 6666666665543
No 320
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=87.41 E-value=43 Score=35.61 Aligned_cols=93 Identities=12% Similarity=0.004 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006010 333 VTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGL 412 (664)
Q Consensus 333 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 412 (664)
..|..-+..+...++.. ...++.+..+-+-.+......++..|.+.|-.+.+..+.+.+-.+-. ...-|..-+..+
T Consensus 373 ~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~ 448 (566)
T PF07575_consen 373 SLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWF 448 (566)
T ss_dssp TTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHH
Confidence 34444444443333222 44455555443334555556666667777766666666665544311 122333444445
Q ss_pred HhcCChhHHHHHHHHHH
Q 006010 413 CRVGKPDEAEEILFEMI 429 (664)
Q Consensus 413 ~~~~~~~~a~~~~~~~~ 429 (664)
.+.|+...+..+...+.
T Consensus 449 ~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 449 IRAGDYSLVTRIADRLL 465 (566)
T ss_dssp H----------------
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55555544444444333
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.37 E-value=13 Score=38.13 Aligned_cols=152 Identities=11% Similarity=0.068 Sum_probs=93.7
Q ss_pred HHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhH
Q 006010 93 YANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHR 172 (664)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 172 (664)
+.-.|+++.|..++-.+. ......++..+.++|..++|+++- ..|+. -.....+.|+++.
T Consensus 596 ~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s--------~D~d~-----rFelal~lgrl~i 655 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS--------TDPDQ-----RFELALKLGRLDI 655 (794)
T ss_pred HhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC--------CChhh-----hhhhhhhcCcHHH
Confidence 334566666655443332 335566777777888888877652 11221 1233456788888
Q ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006010 173 ALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDE 252 (664)
Q Consensus 173 A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 252 (664)
|.++..+.. +..-|..|..+....|++..|.+.|..... |..|+-.+...|+-+....+-..
T Consensus 656 A~~la~e~~---------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 656 AFDLAVEAN---------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred HHHHHHhhc---------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 877766542 445688888888888888888888876553 34566666667776655555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010 253 MQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM 288 (664)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (664)
..+.|.. + ....+|...|+++++.+++..-
T Consensus 718 ~~~~g~~-N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKKQGKN-N-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHhhccc-c-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 5555521 2 2233566678888888777654
No 322
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.29 E-value=7.6 Score=33.87 Aligned_cols=78 Identities=13% Similarity=-0.034 Sum_probs=48.4
Q ss_pred HHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccC---CCCCCHHHHHHHHHHHHhcC
Q 006010 165 IQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVR---NCEPDIYTYCTLMDGLCKEN 241 (664)
Q Consensus 165 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g 241 (664)
.+.|+ +.|.+.|-.+.. .+.--+......+...| -..+.+++++++....+. +-.+|+..+.+|+..+.+.|
T Consensus 118 sr~~d-~~A~~~fL~~E~---~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEG---TPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred hccCc-HHHHHHHHHHcC---CCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 33344 567777777755 33333444444444444 456777888777766442 22567788888888888888
Q ss_pred ChhHHH
Q 006010 242 RLDEAV 247 (664)
Q Consensus 242 ~~~~a~ 247 (664)
+++.|.
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 887764
No 323
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.75 E-value=52 Score=35.83 Aligned_cols=227 Identities=13% Similarity=0.076 Sum_probs=122.1
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHH-HHHhcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 006010 343 VKLGRAVDGARVLMSMEERKFHVNE-------YIYSTLIS-GLFKEGKAEDAMKLWKQMMEK----GCKPNTVVYSALID 410 (664)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~ 410 (664)
....++.+|..++.++...-..|+. ..++.+-. .....|+++.|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567899999998887665333222 12333322 234578889999988887764 12345566777778
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHH---HHH--HHHHHhcCCh--HHHHHHHHHHHHCC---CC---CCHHHHHH
Q 006010 411 GLCRVGKPDEAEEILFEMINNGCAANAFTY---SSL--MKGFFESGKG--HKAVEIWKDMAKNN---CV---YNEVCYSV 477 (664)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~~~~--~~a~~~~~~~~~~~---~~---~~~~~~~~ 477 (664)
+..-.|++++|..+..+..+..-..+...+ ..+ ...+..+|+. .+....+....... .+ +-......
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888889999999888777654222233322 222 2234556632 23333343333221 01 12223444
Q ss_pred HHHHHHc-CCChHHHHHHHHHHHhCCCCcCHHh--HHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCC--HhHHHHHHH
Q 006010 478 LIHGLCE-DGKLREARMVWTQMLSRGCKPDVVA--YSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPD--VFTYNILLN 552 (664)
Q Consensus 478 l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~ 552 (664)
+..++.+ .+...++..-+.--......|-... +..|+......|+.++|...++++...-....+. ...-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 4444444 1222333333332222222222222 2367778888999999999998885433333222 222222222
Q ss_pred H--HHHcCChhHHHHHHHH
Q 006010 553 A--LCKQSNISHSIDLLNS 569 (664)
Q Consensus 553 ~--~~~~g~~~~A~~~~~~ 569 (664)
. ....|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 2357888888877766
No 324
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.16 E-value=36 Score=33.46 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006010 366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKP---NTVVYSALIDGLCRVGKPDEAEEILFEMIN 430 (664)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 430 (664)
...++..++..+.+.|.++.|...+..+...+... .+...-.-+...-..|+..+|...++..+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455666666666777777776666666533111 222333334445556666777776666665
No 325
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.43 E-value=2.9 Score=38.71 Aligned_cols=95 Identities=9% Similarity=0.149 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHH-----HHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC
Q 006010 117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVK-----SFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN 191 (664)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 191 (664)
........+.......+.++++..+.++.. .|+.. +-..+++.+.+ -++++++.+...-+. .|+-||
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRh----s~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIq---YGiF~d 134 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRH----SPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQ---YGIFPD 134 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhc----CcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcch---hccccc
Confidence 333344444444556667777777666632 22210 11122222222 244455555444444 455555
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhhcc
Q 006010 192 TLTFNLVIKTVCRLGLVDNAIQLFREMP 219 (664)
Q Consensus 192 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 219 (664)
..+++.+|..+.+.+++.+|.++.-.|.
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 5555555555555555555555544444
No 326
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.36 E-value=12 Score=32.34 Aligned_cols=88 Identities=11% Similarity=0.149 Sum_probs=45.2
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH
Q 006010 128 YGKAHLVEEAIRLFHTMVDEFHCKRT-----VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTV 202 (664)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 202 (664)
+...|++++|..-|...+.. +++. ...|..-..++++.+.++.|++-..+.++..+ ........-..+|
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p----ty~kAl~RRAeay 178 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP----TYEKALERRAEAY 178 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc----hhHHHHHHHHHHH
Confidence 34556666666666655543 2222 12344444555566666666665555555211 1222333445556
Q ss_pred HhcCChhHHHHHHhhcccC
Q 006010 203 CRLGLVDNAIQLFREMPVR 221 (664)
Q Consensus 203 ~~~g~~~~A~~~~~~~~~~ 221 (664)
.+...+++|++-|..+.+.
T Consensus 179 ek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILES 197 (271)
T ss_pred HhhhhHHHHHHHHHHHHHh
Confidence 6666666666666666555
No 327
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.66 E-value=66 Score=35.12 Aligned_cols=50 Identities=24% Similarity=0.149 Sum_probs=24.3
Q ss_pred cCChhHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010 240 ENRLDEAVLLLDEMQVD----GCFPTPVTFNVLINGLCKNGELGRAAKLVDNMF 289 (664)
Q Consensus 240 ~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 289 (664)
.|+++.|.++-+..... -..+....+..+..+..-.|++++|..+..+..
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 45555555555544332 112233444445555555566666655555443
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.62 E-value=1.5 Score=25.24 Aligned_cols=26 Identities=8% Similarity=0.220 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 547 YNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 547 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
|..+...|...|++++|...|++.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444555555555555555555544
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.25 E-value=0.92 Score=25.90 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=21.9
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 605 ELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
.+++++.+.|++++|.+.|++++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677799999999999999999875
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.20 E-value=2.7 Score=25.52 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010 155 KSFNSVLNVIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 182 (664)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777777655
No 331
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.97 E-value=36 Score=31.60 Aligned_cols=70 Identities=20% Similarity=0.240 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHH
Q 006010 509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD-----RGCDPDLVT 581 (664)
Q Consensus 509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 581 (664)
++......|..+|.+.+|.++.++.++.++- +...|-.++..+...|+--.|..-++++.+ .|+..+...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL---~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL---SEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh---hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 3455567889999999999999999765443 677788899999999998888888887763 466665543
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.87 E-value=66 Score=34.48 Aligned_cols=102 Identities=15% Similarity=0.075 Sum_probs=56.9
Q ss_pred HHHHHhcCChhHHHHHHhhcccCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006010 199 IKTVCRLGLVDNAIQLFREMPVRNCEP---DIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKN 275 (664)
Q Consensus 199 l~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 275 (664)
+..+.+.+.+++|+.+.+..... .| -......++..+...|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 55666777777777776655433 33 2334566667777777777777766666653 555565555555555
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010 276 GELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL 309 (664)
Q Consensus 276 g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 309 (664)
++....-.++ .......+...|..++..+..
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 5443332222 111112344566666666655
No 333
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.66 E-value=38 Score=31.60 Aligned_cols=117 Identities=9% Similarity=0.121 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHc-CC-HhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhH
Q 006010 133 LVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQE-GL-YHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDN 210 (664)
Q Consensus 133 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 210 (664)
.+.+|+++|+..-.+...-.|......+++.+... +. ...--++.+-+... .+-.++..+...++..+++.+++..
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t--~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVST--FSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhc--cccCCChhHHHHHHHHHHhcccHHH
Confidence 35556666653311111233455555556555542 11 11112222222221 1233444455556666666666666
Q ss_pred HHHHHhhcccC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006010 211 AIQLFREMPVR-NCEPDIYTYCTLMDGLCKENRLDEAVLLLD 251 (664)
Q Consensus 211 A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 251 (664)
-.++++..... +...|...|..+++...+.|+..-..++.+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 66666554433 334455556666666666666554444433
No 334
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.33 E-value=2.7 Score=24.19 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010 156 SFNSVLNVIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 156 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 182 (664)
+|..+...+.+.|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666666666666666666666655
No 335
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.68 E-value=3.1 Score=25.26 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 545 FTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566777777777777777777777664
No 336
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.30 E-value=8.6 Score=28.77 Aligned_cols=45 Identities=9% Similarity=0.165 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHh
Q 006010 489 REARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEM 533 (664)
Q Consensus 489 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (664)
-++.+-++.+....+.|++.+..+.+.+|.+.+++.-|+++|+.+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344444555555555555555555666666666666666665544
No 337
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=82.29 E-value=51 Score=32.01 Aligned_cols=122 Identities=11% Similarity=0.144 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHH---cCCHHHHHHHHH
Q 006010 455 KAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCN---AGSVEEALKLFN 531 (664)
Q Consensus 455 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~ 531 (664)
.-+.+++++.+.+ +.+...+..++..+.+..+.++..+-|++++... +-+...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3445555555553 3455555556666666666666666666666542 1134455555544332 123444444444
Q ss_pred HhhhcC----CCC------CCC--Hh---HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC
Q 006010 532 EMLCLE----PKS------QPD--VF---TYNILLNALCKQSNISHSIDLLNSMMDRGC-DPD 578 (664)
Q Consensus 532 ~~~~~~----~~~------~~~--~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~ 578 (664)
+.+..- .+. .++ .. .+..+...+.+.|..+.|+.+++-+++.++ .|.
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 443110 010 011 11 122223334678999999999999998644 343
No 338
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.18 E-value=7.8 Score=36.46 Aligned_cols=89 Identities=13% Similarity=-0.002 Sum_probs=39.4
Q ss_pred HHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCH
Q 006010 91 QHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLY 170 (664)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (664)
+.|.+.|.+++|+.+|.......+ .+...+...+.+|.+..++..|..-....+.. ...-+.+|.--+.+--..|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHhhH
Confidence 445555555555555555554332 23334444444555555555444444333221 111223333333333334444
Q ss_pred hHHHHHHHHHHh
Q 006010 171 HRALEFYNHIVN 182 (664)
Q Consensus 171 ~~A~~~~~~~~~ 182 (664)
.+|.+-++..++
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 555555554444
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.17 E-value=2.2 Score=26.62 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=22.3
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHcC
Q 006010 605 ELAIRLFKRQRTSGGFKIVEVMLQKF 630 (664)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (664)
.|+.+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35677999999999999999998654
No 340
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.02 E-value=66 Score=35.60 Aligned_cols=61 Identities=16% Similarity=0.050 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHH-HHH-H--HHHHHhcCCHHHHHHHHHHhhh
Q 006010 86 FYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKS-FIF-I--FKAYGKAHLVEEAIRLFHTMVD 146 (664)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~-l--~~~~~~~g~~~~A~~~~~~~~~ 146 (664)
+..-+..+.+..++++|..+.+.....++.....+ ... + +--+..+|++++|.+.|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 56667777777778888777666554332211111 111 1 2234578899999999988743
No 341
>PRK09687 putative lyase; Provisional
Probab=81.80 E-value=48 Score=31.38 Aligned_cols=201 Identities=12% Similarity=0.055 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-----hHHHHHHHHHHHCCCCCC
Q 006010 366 NEYIYSTLISGLFKEGKA----EDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKP-----DEAEEILFEMINNGCAAN 436 (664)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-----~~a~~~~~~~~~~~~~~~ 436 (664)
+...-...+.++.+.|+. +++...+..+... .++..+-...+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 344444445555555542 3455556555333 24444444455554443321 223333333333 235
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhCCCCcCHHhHHHHHH
Q 006010 437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDG-KLREARMVWTQMLSRGCKPDVVAYSSMIH 515 (664)
Q Consensus 437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 515 (664)
..+-...+.++.+.++ .+++..+-.+.+ .++...-...+.++...+ +...+...+..+.. .++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 5566666677777665 455565555554 244455555556666543 24466666666664 456667777788
Q ss_pred HHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 006010 516 GLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTAL 589 (664)
Q Consensus 516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 589 (664)
++.+.|+ ..|+..+-+.+ +.+ + .....+.++...|.. +|+..+.++.+ -.||.......+.+|
T Consensus 215 aLg~~~~-~~av~~Li~~L--~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 215 GLALRKD-KRVLSVLIKEL--KKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKL 277 (280)
T ss_pred HHHccCC-hhHHHHHHHHH--cCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHH
Confidence 8888887 45666555553 222 2 234566777778874 68888888886 355766665555553
No 342
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.75 E-value=12 Score=28.07 Aligned_cols=65 Identities=14% Similarity=0.214 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 006010 522 SVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTAL 589 (664)
Q Consensus 522 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 589 (664)
+.=++.+-++.+ ...+..|++....+.+++|.+.+++.-|+++++..... +..+...|..+++.+
T Consensus 22 D~we~rr~mN~l--~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNL--FGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHH--hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 344566666666 45578899999999999999999999999999988743 333555677777663
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.74 E-value=11 Score=33.21 Aligned_cols=75 Identities=13% Similarity=0.163 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC--CCcCHHhHHHHHH
Q 006010 440 YSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG--CKPDVVAYSSMIH 515 (664)
Q Consensus 440 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~ 515 (664)
.+..+..+.+.+..++++...+.-.+.. |.+..+-..+++.+|-.|++++|..-++-.-... ..+....|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445566777788888888888777766 5566677778888888888888887776655431 1222344555544
No 344
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.00 E-value=85 Score=33.78 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCh-------hHHHHHHHHHHhC
Q 006010 194 TFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRL-------DEAVLLLDEMQVD 256 (664)
Q Consensus 194 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~a~~~~~~~~~~ 256 (664)
.| .++-.+.|.|++++|.++..+.... .......+...+..|....+- ++...-|++....
T Consensus 114 ~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 114 IW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 44 5667888999999999999555443 234456677788888764322 3445555555544
No 345
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=80.26 E-value=87 Score=33.40 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010 555 CKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA 588 (664)
Q Consensus 555 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 588 (664)
.+.|++.+|.+.+-.+.+.+..|...-...+.++
T Consensus 506 ~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 506 YDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ----------------------------------
T ss_pred HhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 3458888888888888876677766554444443
No 346
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.24 E-value=2.4 Score=22.81 Aligned_cols=21 Identities=10% Similarity=-0.102 Sum_probs=11.8
Q ss_pred HHHHHHhcccchHHHHHHHHH
Q 006010 639 ERVVQELCRPKRIQAAINKCW 659 (664)
Q Consensus 639 ~~l~~~~~~~g~~~~A~~~~~ 659 (664)
..++..+...|+.++|...++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 445555566666666655543
No 347
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.10 E-value=9.1 Score=33.66 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006010 509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL 579 (664)
Q Consensus 509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 579 (664)
|...-++.+.+.+..++|+...++-++.+|. |...-..++..++-.|+|++|..-++-.-+ +.|+.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt---da~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~ 68 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT---DAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQD 68 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc---cccchhHHHHHHhhcchHHHHHHHHHHHhh--cCccc
Confidence 4556678889999999999999887654333 455566788999999999999988887776 45543
No 348
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.09 E-value=23 Score=26.74 Aligned_cols=77 Identities=9% Similarity=0.073 Sum_probs=49.3
Q ss_pred CcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 006010 98 DFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFY 177 (664)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 177 (664)
..++|..+-+.+...+.. .+.+-...+..+...|+|++|..+.+.. +.||...|.++.. .+.|..+++...+
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL-----CYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC-----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 466777777766655422 3333334445567888888888877655 5788887766644 5667777666666
Q ss_pred HHHHh
Q 006010 178 NHIVN 182 (664)
Q Consensus 178 ~~~~~ 182 (664)
..+..
T Consensus 92 ~rla~ 96 (115)
T TIGR02508 92 NRLAA 96 (115)
T ss_pred HHHHh
Confidence 66654
No 349
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.95 E-value=24 Score=26.82 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010 525 EALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA 588 (664)
Q Consensus 525 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 588 (664)
+..+-++.+ ......|++.+..+.+++|.+.+++.-|+++++..... +.+....|..+++-
T Consensus 28 e~rrglN~l--~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNL--FGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHH--TTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHH
T ss_pred HHHHHHHHH--hccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHH
Confidence 344444444 33445566666666666666666666666666665542 22222245555544
No 350
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.85 E-value=33 Score=28.35 Aligned_cols=54 Identities=17% Similarity=0.055 Sum_probs=32.0
Q ss_pred HHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006010 92 HYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVD 146 (664)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 146 (664)
.-...++++.+..+++.+.-..+. ....-..-...+...|+|.+|+++|+.+.+
T Consensus 19 ~aL~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 334567777777777777655433 222333333445667777777777777643
No 351
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.72 E-value=46 Score=29.91 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=10.1
Q ss_pred HhcCCHHHHHHHHHHh
Q 006010 129 GKAHLVEEAIRLFHTM 144 (664)
Q Consensus 129 ~~~g~~~~A~~~~~~~ 144 (664)
+-.+.+++|.++|.+.
T Consensus 25 gg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERA 40 (288)
T ss_pred CCCcchHHHHHHHHHH
Confidence 4445677777776654
No 352
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=79.05 E-value=19 Score=29.00 Aligned_cols=68 Identities=7% Similarity=0.135 Sum_probs=52.0
Q ss_pred CCChhHHHHHHHHHHhCCCcc---hHHHHHHHHHh-CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010 80 QLGDSTFYSLIQHYANSGDFK---SLEMVLYRMRR-EKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE 147 (664)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 147 (664)
.++.++-..+..++.++.+.+ +...+++.+.+ ..+.........++-.+.+.++++.++++.+.+++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 466777888888888887654 55667888886 444445566777888899999999999999988764
No 353
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=78.89 E-value=60 Score=30.77 Aligned_cols=98 Identities=9% Similarity=0.069 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHH
Q 006010 546 TYNILLNALCKQSNISHSIDLLNSMMD----RGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFK 621 (664)
Q Consensus 546 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 621 (664)
.+-.....|++.|+.+.|++.+.+..+ .|.+.|...+..-++. .|..+.-..+-++
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlgl--------------------fy~D~~lV~~~ie 165 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGL--------------------FYLDHDLVTESIE 165 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH--------------------hhccHHHHHHHHH
Confidence 455556667778887777777765553 3555555444333333 2555555555555
Q ss_pred HHHHHHHcCCCCChHHHHHH--HHHhcccchHHHHHHHHHhhhc
Q 006010 622 IVEVMLQKFLSPQTSTWERV--VQELCRPKRIQAAINKCWSNLY 663 (664)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~l~ 663 (664)
..+.+.++|..-+...-... +--+....++++|-++|-..++
T Consensus 166 kak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 166 KAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 55666666544333221111 1112334567777777666543
No 354
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=78.82 E-value=72 Score=31.67 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=26.9
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHh
Q 006010 478 LIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEM 533 (664)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (664)
|+.-|...|+..+|....+++--- .--....+.+++.+..+.|+-..-..+++..
T Consensus 515 LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~c 569 (645)
T KOG0403|consen 515 LLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKEC 569 (645)
T ss_pred HHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 445555556666665555544211 0112344555555555555555555555444
No 355
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.73 E-value=56 Score=30.30 Aligned_cols=124 Identities=11% Similarity=-0.017 Sum_probs=77.0
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhCC-----CCcC--------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 006010 88 SLIQHYANSGDFKSLEMVLYRMRREK-----RVVL--------EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTV 154 (664)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 154 (664)
.-...+.-+.||..|....++..+.= ...+ ...-..-|.+++..|+|.+++.+.-+.-+. ..+-.+
T Consensus 40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~-pEklPp 118 (309)
T PF07163_consen 40 EAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV-PEKLPP 118 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC-cccCCH
Confidence 33455566677777777776655321 0000 111224578888999999988765443221 112234
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHh-----cCChhHHHHHH
Q 006010 155 KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCR-----LGLVDNAIQLF 215 (664)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~g~~~~A~~~~ 215 (664)
.....-|-.|.+.+++..+.++-...+...... +...|..++..|.. .|.+++|+++.
T Consensus 119 kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq---~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 119 KILELCILLYSKVQEPAAMLEVASAWLQDPSNQ---SLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccC---CchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 455666778889999999999888887743222 33347776666654 58888888887
No 356
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.68 E-value=36 Score=28.13 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=25.6
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010 130 KAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 130 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 182 (664)
..++.+++..+++.+.-..+..+...++. ...++..|++.+|..+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhc
Confidence 45566666666655533322222333332 2233556666666666666654
No 357
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=78.00 E-value=73 Score=31.28 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010 401 NTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAA---NAFTYSSLMKGFFESGKGHKAVEIWKDMAK 465 (664)
Q Consensus 401 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 465 (664)
...++..+...+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677778888888999999998888887753211 344555556667778888888888887776
No 358
>PRK11619 lytic murein transglycosylase; Provisional
Probab=77.44 E-value=1.1e+02 Score=33.07 Aligned_cols=47 Identities=2% Similarity=-0.041 Sum_probs=33.3
Q ss_pred HHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHH
Q 006010 608 IRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINK 657 (664)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 657 (664)
..+...|+...|...+..+... .++.....+.......|..+-|+..
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~ 461 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQA 461 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3477789999999888888763 3555566666666777777776644
No 359
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=77.05 E-value=20 Score=32.02 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=13.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHH
Q 006010 550 LLNALCKQSNISHSIDLLNSMM 571 (664)
Q Consensus 550 l~~~~~~~g~~~~A~~~~~~~~ 571 (664)
-+......|+.++|++.+.+..
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhC
Confidence 3445566677777776666654
No 360
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=76.79 E-value=76 Score=30.81 Aligned_cols=126 Identities=12% Similarity=0.045 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHH---cCChhHHH
Q 006010 488 LREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCK---QSNISHSI 564 (664)
Q Consensus 488 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~ 564 (664)
.+.-+.+++++++.+ +.+...+..++..+.+..+.++..+-+++++...++ +...|..++..... .-.+++..
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~---~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG---SPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHhccCcHHHHH
Confidence 455677888888873 345667788889999999999999999999765555 77889888876544 22466777
Q ss_pred HHHHHHHHC------CC---C-CCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCC
Q 006010 565 DLLNSMMDR------GC---D-PDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFL 631 (664)
Q Consensus 565 ~~~~~~~~~------~~---~-p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (664)
.+|.+.++. +. . +-..+...++.. +-.+...+.++|..+.|..+++-+.+.++
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v--------------~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYV--------------FLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHH--------------HHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 766665531 11 0 001111111111 22344458899999999999999998743
No 361
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.12 E-value=34 Score=31.61 Aligned_cols=90 Identities=11% Similarity=0.150 Sum_probs=67.9
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHH
Q 006010 87 YSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQ 166 (664)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (664)
..-|++++..+++.++....-+--+..-..+..+.-.=|-.|.+.|......++-...+...+ +.+...|..++..|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHH
Confidence 334789999999999887766665554455666777778889999999999998888765432 3444558777777766
Q ss_pred -----cCCHhHHHHHH
Q 006010 167 -----EGLYHRALEFY 177 (664)
Q Consensus 167 -----~~~~~~A~~~~ 177 (664)
.|.+++|.++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 49999999987
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.75 E-value=8.7 Score=27.52 Aligned_cols=51 Identities=10% Similarity=0.105 Sum_probs=39.7
Q ss_pred hhhcCCcchHHHHHHHHHHcCCCC-C-hHHHHHHHHHhcccchHHHHHHHHHh
Q 006010 610 LFKRQRTSGGFKIVEVMLQKFLSP-Q-TSTWERVVQELCRPKRIQAAINKCWS 660 (664)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 660 (664)
++.....++|+..|++++++-..+ + -.++..++.+++..|++.+++++--+
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999872222 2 15567788899999999999887544
No 363
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=75.48 E-value=88 Score=30.91 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=33.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHH
Q 006010 552 NALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQ 628 (664)
Q Consensus 552 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (664)
..+.+.|-+..|.++.+-+......-|+......++.+ ..+.+.++--+++.+....
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~--------------------ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYY--------------------ALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHH--------------------HHhcCCHHHHHHHHHhHhh
Confidence 44566777777777777777643333455555555554 4455666655666555443
No 364
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.41 E-value=34 Score=26.08 Aligned_cols=47 Identities=13% Similarity=0.161 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010 245 EAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK 291 (664)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (664)
+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555556666666666666666666666666666665544
No 365
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.24 E-value=9.1 Score=34.19 Aligned_cols=102 Identities=8% Similarity=0.008 Sum_probs=50.0
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccC-------CCCchhh-------hHHHHHHhhhcCCcchH
Q 006010 554 LCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEA-------PQDGTDF-------LNELAIRLFKRQRTSGG 619 (664)
Q Consensus 554 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~-------~~~~~~~-------~~~l~~~~~~~g~~~~A 619 (664)
|....+++.|+..|-+.+. +.|+..+|..--..|--..+. +..+.++ .--++.++.....+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 4455678888888877776 788876664433333111110 0000111 01233444455555556
Q ss_pred HHHHHHHHHc----CCCCChHHHHHHHHHhcccchHHHHHHH
Q 006010 620 FKIVEVMLQK----FLSPQTSTWERVVQELCRPKRIQAAINK 657 (664)
Q Consensus 620 ~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 657 (664)
+..+.++... .+.+...++..|..+--+.=+..++.++
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri 139 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRI 139 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHH
Confidence 5555555332 3344445555555554444444444443
No 366
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.59 E-value=94 Score=31.39 Aligned_cols=39 Identities=13% Similarity=0.080 Sum_probs=25.0
Q ss_pred cCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 006010 205 LGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRL 243 (664)
Q Consensus 205 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 243 (664)
.+.++...++++.+...|.......++.-...|.+.|..
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence 466777777777776666554455566666666666654
No 367
>PRK10941 hypothetical protein; Provisional
Probab=74.34 E-value=35 Score=31.94 Aligned_cols=66 Identities=6% Similarity=-0.135 Sum_probs=38.1
Q ss_pred HHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHH
Q 006010 89 LIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVK 155 (664)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 155 (664)
+-..|.+.++++.|..+.+.+....+. ++.-+...+-.|.+.|.+..|..-++..++..+..|++.
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 344556666666666666666665533 444555555556666666666666666655533333333
No 368
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.58 E-value=1.7e+02 Score=33.31 Aligned_cols=119 Identities=13% Similarity=0.058 Sum_probs=60.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCC----------------------CCCC-----HHHHHHHHHHHHHcCCHhHHHH
Q 006010 123 FIFKAYGKAHLVEEAIRLFHTMVDEFH----------------------CKRT-----VKSFNSVLNVIIQEGLYHRALE 175 (664)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~~~~~----------------------~~~~-----~~~~~~l~~~~~~~~~~~~A~~ 175 (664)
.+..+|...|...+|++.|.......+ ..++ ..-|..+++.+-+.+-.+.+.+
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQ 1004 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQ 1004 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 445557777888888887777644222 1111 2234555666666666666666
Q ss_pred HHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 006010 176 FYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRL 243 (664)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 243 (664)
+-..+++.-+...+.-..+++.+.+.....|.+-+|...+-.-... .........++-.++.+|.+
T Consensus 1005 lA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg~l 1070 (1480)
T KOG4521|consen 1005 LAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECGEL 1070 (1480)
T ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhccch
Confidence 6555554211111111224555666666666666665555333221 11122445555556666554
No 369
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=73.35 E-value=48 Score=26.89 Aligned_cols=76 Identities=11% Similarity=0.198 Sum_probs=42.1
Q ss_pred CcCHHhHHHHHHHHHHcCC---HHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006010 504 KPDVVAYSSMIHGLCNAGS---VEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV 580 (664)
Q Consensus 504 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 580 (664)
.++..+-..+..++.+..+ .++.+.+++..++ .....-.......|.-++.+.|+++++.++++.+++ ..||..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcH
Confidence 3444555556666665543 5566777777743 111111222333444566777777777777777776 456554
Q ss_pred HH
Q 006010 581 TC 582 (664)
Q Consensus 581 ~~ 582 (664)
-.
T Consensus 106 Qa 107 (149)
T KOG3364|consen 106 QA 107 (149)
T ss_pred HH
Confidence 33
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.23 E-value=14 Score=26.50 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=23.1
Q ss_pred cCCChHHHHHHHHHHHhCCCCcC--HHhHHHHHHHHHHcCCHHHHHHH
Q 006010 484 EDGKLREARMVWTQMLSRGCKPD--VVAYSSMIHGLCNAGSVEEALKL 529 (664)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 529 (664)
...+.++|+..|...++.-..+. -.++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666655554422221 13444555556666665555544
No 371
>PRK09687 putative lyase; Provisional
Probab=73.21 E-value=85 Score=29.70 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=9.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHHh
Q 006010 478 LIHGLCEDGKLREARMVWTQMLS 500 (664)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~ 500 (664)
.+.++...|+. +|...+..+.+
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHh
Confidence 33444444442 34444444443
No 372
>PRK11619 lytic murein transglycosylase; Provisional
Probab=72.77 E-value=1.5e+02 Score=32.21 Aligned_cols=409 Identities=10% Similarity=0.014 Sum_probs=189.3
Q ss_pred HHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcC
Q 006010 89 LIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEG 168 (664)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (664)
-.....+.|++..+.++...+. +.+.....-...+..-......++....++... +.+.....-...+..+.+.+
T Consensus 39 ~A~~a~~~g~~~~~~~~~~~l~--d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~---~~P~~~~Lr~~~l~~La~~~ 113 (644)
T PRK11619 39 QIKQAWDNRQMDVVEQLMPTLK--DYPLYPYLEYRQLTQDLMNQPAVQVTNFIRANP---TLPPARSLQSRFVNELARRE 113 (644)
T ss_pred HHHHHHHCCCHHHHHHHHHhcc--CCCcHhHHHHHHHHhccccCCHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHcc
Confidence 3455667788888777766654 222222111111111122334555554444331 12333333344455566677
Q ss_pred CHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHH-
Q 006010 169 LYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAV- 247 (664)
Q Consensus 169 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~- 247 (664)
++...+.++.. .+.+...-.....+....|+.++|.+....+=..| ...+..+..++..+.+.|.+....
T Consensus 114 ~w~~~~~~~~~--------~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~ 184 (644)
T PRK11619 114 DWRGLLAFSPE--------KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAY 184 (644)
T ss_pred CHHHHHHhcCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHH
Confidence 77766663321 12344444556677778888877777776664444 334566777887777766654332
Q ss_pred -HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH---------cCCCCCHHHHHHHHHHH--HhcCChHH
Q 006010 248 -LLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFL---------KGCLPNEVTYNTLIHGL--CLKGNLDK 315 (664)
Q Consensus 248 -~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~g~~p~~~~~~~l~~~~--~~~g~~~~ 315 (664)
+=++.+...| +...-..+...+. .+.....+.+..+.. ..+.|+...-..++.++ ....+.+.
T Consensus 185 w~R~~~al~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~ 259 (644)
T PRK11619 185 LERIRLAMKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAEN 259 (644)
T ss_pred HHHHHHHHHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHH
Confidence 2223333332 3333333333221 111111111111111 11112221111111111 12345566
Q ss_pred HHHHHHHHHHCC-CCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006010 316 AVSLLDRMVASK-CMPNE--VTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQ 392 (664)
Q Consensus 316 a~~~~~~~~~~~-~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 392 (664)
|..++....... +.+.. .++..+.......+...++...++...... .+......-+....+.++++.+...+..
T Consensus 260 A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~ 337 (644)
T PRK11619 260 ARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLAR 337 (644)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHh
Confidence 777777654332 21111 122333322233322455555555543322 1333344444455577777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHHCCCCCC
Q 006010 393 MMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKA-VEIWKDMAKNNCVYN 471 (664)
Q Consensus 393 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~ 471 (664)
|.... .-...-.--+..++...|+.++|..+|+.+... .+ .|..|... +.|..-.- ...... ....+..+
T Consensus 338 L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~--fYG~LAa~--~Lg~~~~~~~~~~~~-~~~~~~~~ 408 (644)
T PRK11619 338 LPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG--FYPMVAAQ--RLGEEYPLKIDKAPK-PDSALTQG 408 (644)
T ss_pred cCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--cHHHHHHH--HcCCCCCCCCCCCCc-hhhhhccC
Confidence 65432 113333334555656677778887777776431 11 22222211 12211000 000000 00000000
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHH
Q 006010 472 EVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNE 532 (664)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 532 (664)
.-..-+..+...|....|...|..+... .+......+.......|..+.++.....
T Consensus 409 --~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 409 --PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred --hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 0112344566778888888888887763 3444555555666677887777766544
No 373
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=72.77 E-value=72 Score=28.69 Aligned_cols=67 Identities=10% Similarity=0.066 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHcCC-------HHHHHHHHHHhhhcCCC--CCCC-HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 006010 509 AYSSMIHGLCNAGS-------VEEALKLFNEMLCLEPK--SQPD-VFTYNILLNALCKQSNISHSIDLLNSMMDRGC 575 (664)
Q Consensus 509 ~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 575 (664)
.+..+...|...|+ ...|.+.|.++...+.. ...+ ......+.....+.|+.++|.++|.+++..+-
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 34445555655565 34566666666433221 1112 22333455667788888888888888886543
No 374
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.82 E-value=10 Score=23.75 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=11.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHh
Q 006010 513 MIHGLCNAGSVEEALKLFNEM 533 (664)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~ 533 (664)
+..+|...|+.+.|..++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~ev 25 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEV 25 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHH
Confidence 445555555555555555555
No 375
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.59 E-value=1.2e+02 Score=30.59 Aligned_cols=26 Identities=0% Similarity=-0.079 Sum_probs=19.0
Q ss_pred hhhcCCcchHHHHHHHHHHcCCCCCh
Q 006010 610 LFKRQRTSGGFKIVEVMLQKFLSPQT 635 (664)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 635 (664)
.....++..|.++|+++.+-+.+..|
T Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (831)
T PRK15180 786 AMHLRDYTQALQYWQRLEKVNGPTEP 811 (831)
T ss_pred HhHHHHHHHHHHHHHHHHhccCCCcc
Confidence 34567889999999999887434344
No 376
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=71.01 E-value=93 Score=29.19 Aligned_cols=115 Identities=11% Similarity=0.139 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-ChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 006010 243 LDEAVLLLDEMQV-DGCFPTPVTFNVLINGLCK-NG-ELGRAAKLVDNMFLK-GCLPNEVTYNTLIHGLCLKGNLDKAVS 318 (664)
Q Consensus 243 ~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~ 318 (664)
..+|+++|+.... ..+-.|..+...+++.... .+ ....-.++.+-+... |..++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4556666653221 2234466666666666554 22 222222333333222 345566667777777777888887777
Q ss_pred HHHHHHHC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 006010 319 LLDRMVAS-KCMPNEVTYGTIINGLVKLGRAVDGARVLMS 357 (664)
Q Consensus 319 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 357 (664)
+++..... +...|...|..+++.....|+..-..++.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 77766654 4555777777777777777776655555543
No 377
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.69 E-value=25 Score=23.05 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=20.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010 550 LLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA 588 (664)
Q Consensus 550 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 588 (664)
+.-++.+.|++++|.+..+.+++ +.|+......+-..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 34455666666666666666666 56665555444443
No 378
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=70.69 E-value=41 Score=25.88 Aligned_cols=80 Identities=11% Similarity=0.128 Sum_probs=46.8
Q ss_pred hCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 006010 95 NSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRAL 174 (664)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 174 (664)
-....++|..+.+.+...+. ..+.+....+..+.+.|+|++|+.. ......||...|.++. -.+.|..+++.
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~-----~~~~~~pdL~p~~AL~--a~klGL~~~~e 89 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLL-----PQCHCYPDLEPWAALC--AWKLGLASALE 89 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHH-----HTTS--GGGHHHHHHH--HHHCT-HHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHh-----cccCCCccHHHHHHHH--HHhhccHHHHH
Confidence 34567788888888877664 2333444445556788888888222 1223567776665553 36778888888
Q ss_pred HHHHHHHh
Q 006010 175 EFYNHIVN 182 (664)
Q Consensus 175 ~~~~~~~~ 182 (664)
..+.++-.
T Consensus 90 ~~l~rla~ 97 (116)
T PF09477_consen 90 SRLTRLAS 97 (116)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHHh
Confidence 87776644
No 379
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=70.54 E-value=1.7e+02 Score=31.94 Aligned_cols=203 Identities=14% Similarity=0.125 Sum_probs=109.7
Q ss_pred ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHH---HhcCCHHHHHHHHHHhhhcCCCCCCHHHHH
Q 006010 82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAY---GKAHLVEEAIRLFHTMVDEFHCKRTVKSFN 158 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 158 (664)
+...+..++..+.+.|+++....--..|...- +.++..|...+... ...+...++..+|++.+..+ .++..|.
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy---~~v~iw~ 187 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY---NSVPIWE 187 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc---ccchHHH
Confidence 34456778888899999888777766666554 44555666444332 34578888888998887643 3444555
Q ss_pred HHHHHHHH-------cCCHhHHHHHHHHHHhcccCCCCcCHHHHHHH---HHHHHhcCChhHHHHHHhhcccCCCCCCHH
Q 006010 159 SVLNVIIQ-------EGLYHRALEFYNHIVNAKHMNILPNTLTFNLV---IKTVCRLGLVDNAIQLFREMPVRNCEPDIY 228 (664)
Q Consensus 159 ~l~~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 228 (664)
-.+..+.. .++++....+|+++++.-+..+.-....|... =..|...-..+....+|..-+..+ -|..
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~--~D~~ 265 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP--LDED 265 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--chhh
Confidence 55544433 35677888888888774333332222223222 223333344455555655544443 2222
Q ss_pred HHHHHHHHHH-------hcCChhHHHHHH-------HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010 229 TYCTLMDGLC-------KENRLDEAVLLL-------DEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK 291 (664)
Q Consensus 229 ~~~~l~~~~~-------~~g~~~~a~~~~-------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (664)
+-..-..--. ...+++.+.+-+ ++..+. ..+-...|-.+|+...+.|+.-....+++++...
T Consensus 266 ~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 266 TRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred hhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 2111111111 122333333322 222221 1233446677777788888887777777776544
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.97 E-value=18 Score=37.02 Aligned_cols=97 Identities=9% Similarity=0.027 Sum_probs=49.5
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHH
Q 006010 121 FIFIFKAYGK-AHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVI 199 (664)
Q Consensus 121 ~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll 199 (664)
+..+...|-+ .|+..+|+..+...+--.+....-....+++..+.+.|...+|--++..+.... ..+.-+ +-.+.
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA-~~~t~n---~y~l~ 290 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA-DFFTSN---YYTLG 290 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC-cccccc---ceeHH
Confidence 3344444443 567777777666553321111111234556666667777666666665554421 111111 33445
Q ss_pred HHHHhcCChhHHHHHHhhcccC
Q 006010 200 KTVCRLGLVDNAIQLFREMPVR 221 (664)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~~~~~ 221 (664)
.+++..|++.....-|+...+.
T Consensus 291 ~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 291 NIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred HHHHHHhhhhhhhhhhhhhhcc
Confidence 5566666666666666655544
No 381
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=69.66 E-value=9.2 Score=38.01 Aligned_cols=102 Identities=12% Similarity=0.098 Sum_probs=49.3
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCcCHHh-HHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCCh
Q 006010 482 LCEDGKLREARMVWTQMLSRGCKPDVVA-YSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNI 560 (664)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 560 (664)
+...+.++.|..++.++++. .||... |..-..++.+.+++..|+.=+.++++.++. -...|-.-..++.+.+.+
T Consensus 14 ~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~---~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT---YIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch---hhheeeeccHHHHhHHHH
Confidence 34455566666666666653 444332 222335555666666666655555432211 111222222334444555
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHhhh
Q 006010 561 SHSIDLLNSMMDRGCDPDLVTCNIFLTALK 590 (664)
Q Consensus 561 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 590 (664)
.+|+..|+.... +.|+..-+...+..|.
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 555555555554 5565555555555543
No 382
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=69.44 E-value=9.1 Score=20.77 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=12.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 006010 547 YNILLNALCKQSNISHSIDLLNSMM 571 (664)
Q Consensus 547 ~~~l~~~~~~~g~~~~A~~~~~~~~ 571 (664)
|..+...+...|++++|...+++.+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444555555555555555544
No 383
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.10 E-value=1.2e+02 Score=29.84 Aligned_cols=94 Identities=11% Similarity=0.066 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccC---------CCCC
Q 006010 155 KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVR---------NCEP 225 (664)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---------~~~~ 225 (664)
..+.-+..-|..+|+++.|++.|-++..-. .........|..+|..-...|+|........+..+. .+++
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYC-Ts~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYC-TSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhh-cchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 356667777777778777777777754310 001112234555555556666666655555544332 1223
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHH
Q 006010 226 DIYTYCTLMDGLCKENRLDEAVLLLD 251 (664)
Q Consensus 226 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 251 (664)
....+..+.....+ ++..|.+.|-
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL 253 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFL 253 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHH
Confidence 33344444444333 5555555443
No 384
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=68.80 E-value=26 Score=31.42 Aligned_cols=59 Identities=10% Similarity=-0.103 Sum_probs=42.0
Q ss_pred HHHHHhhhcCCcc-------hHHHHHHHHHHcCCCC-----ChHHHHHHHHHhcccchHHHHHHHHHhhhc
Q 006010 605 ELAIRLFKRQRTS-------GGFKIVEVMLQKFLSP-----QTSTWERVVQELCRPKRIQAAINKCWSNLY 663 (664)
Q Consensus 605 ~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 663 (664)
.++|.|...|+.+ .|.+.|++..+..-.| +..+...++....+.|+.++|.++|.+.+.
T Consensus 123 rlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 123 RLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 4678888888844 4666666666552221 235666788888999999999999988653
No 385
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.21 E-value=1.1e+02 Score=28.77 Aligned_cols=61 Identities=18% Similarity=0.056 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHH
Q 006010 547 YNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVM 626 (664)
Q Consensus 547 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (664)
++.....|...|.+.+|.++.++... +.|=..+.+-.+... |...|+--.|.+.++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~--------------------la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMAS--------------------LATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHH--------------------HHHhccchhhhhHHHHH
Confidence 44555778999999999999999997 566555544444432 88889888888887777
Q ss_pred HHc
Q 006010 627 LQK 629 (664)
Q Consensus 627 ~~~ 629 (664)
.+.
T Consensus 340 a~v 342 (361)
T COG3947 340 AEV 342 (361)
T ss_pred HHH
Confidence 543
No 386
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=67.59 E-value=1.1e+02 Score=28.60 Aligned_cols=69 Identities=13% Similarity=0.249 Sum_probs=30.9
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHhhhc--CCCCCCCHhHHH-HHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 006010 508 VAYSSMIHGLCNAGSVEEALKLFNEMLCL--EPKSQPDVFTYN-ILLNALCKQSNISHSIDLLNSMMDRGCD 576 (664)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 576 (664)
.++..+...|++.++.+.+.++..+.++. ..|.+.|...-. .|.-.|....-.++-++..+.|.+.|..
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 44555555666666666555555444321 123333322111 1112233333445555555555555543
No 387
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=67.35 E-value=50 Score=24.69 Aligned_cols=53 Identities=15% Similarity=-0.025 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCC
Q 006010 117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGL 169 (664)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (664)
+..+...+...+...|++++|++.+-.+++......+...-..++..+...|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 55666777777777777777777776665543322233333444444443333
No 388
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=67.31 E-value=35 Score=25.70 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=28.9
Q ss_pred HHhCCCcchHHHHHHHHH----hCCCCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010 93 YANSGDFKSLEMVLYRMR----REKRVV----LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE 147 (664)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~----~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 147 (664)
..+.|++..|.+.+.+.. ..+... -..+...++......|.+++|++.+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345666666654444433 222221 1223444555566667777777777666543
No 389
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.52 E-value=1.4e+02 Score=29.50 Aligned_cols=163 Identities=13% Similarity=0.145 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcc------cCCCCcC
Q 006010 119 KSFIFIFKAYGKAHLVEEAIRLFHTMVDEFH-CKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAK------HMNILPN 191 (664)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~ 191 (664)
..+..+...|..+|+++.|++.|.+..+.-. .+..+..|..++..-+-.|+|.....+..+..+.. ...+.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 3567889999999999999999998643310 12235567778888888899988888877776521 0112333
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhhcccCCC-------CCCHHHHHHHHHHHHhcCChhHHH-----HHHHHHHhCCCC
Q 006010 192 TLTFNLVIKTVCRLGLVDNAIQLFREMPVRNC-------EPDIYTYCTLMDGLCKENRLDEAV-----LLLDEMQVDGCF 259 (664)
Q Consensus 192 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~-----~~~~~~~~~~~~ 259 (664)
...+..+.... .++++.|.+.|-......+ +.|..+|..+ .++.--++-+--+ ..|+...+
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggL-cALAtfdr~~Lk~~vi~n~~Fk~fle---- 303 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGL-CALATFDRQDLKLNVIKNESFKLFLE---- 303 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhh-HhhccCCHHHHHHHHHcchhhhhHHh----
Confidence 34444444333 4477777766654432211 1234444433 2222222221111 12222332
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006010 260 PTPVTFNVLINGLCKNGELGRAAKLVDNMFL 290 (664)
Q Consensus 260 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 290 (664)
..+..+..+...| .+++...+++++++..
T Consensus 304 l~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 304 LEPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred cChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 2444555555544 3568888888887754
No 390
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.78 E-value=1.2e+02 Score=28.33 Aligned_cols=19 Identities=5% Similarity=-0.113 Sum_probs=12.5
Q ss_pred hhhcCCcchHHHHHHHHHH
Q 006010 610 LFKRQRTSGGFKIVEVMLQ 628 (664)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~ 628 (664)
.|...++.-|..+|-+..+
T Consensus 216 hcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 216 HCDDRDYKTASSYFIEALE 234 (421)
T ss_pred eeccccchhHHHHHHHHHh
Confidence 4556667777777777665
No 391
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=65.49 E-value=1.3e+02 Score=28.68 Aligned_cols=123 Identities=12% Similarity=0.062 Sum_probs=62.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC-------CChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHH----c
Q 006010 452 KGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCED-------GKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCN----A 520 (664)
Q Consensus 452 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 520 (664)
+..+|...++...+.|..+...+...+...|... -+...|...+.++-..+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5556666666665555332212222233333222 12246777777776655 33344444444432 3
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC---------------ChhHHHHHHHHHHHCCCCCCHHHHH
Q 006010 521 GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS---------------NISHSIDLLNSMMDRGCDPDLVTCN 583 (664)
Q Consensus 521 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~p~~~~~~ 583 (664)
.+.++|..+|.++ .+.+. ......+. .+...| +...|...+......+.........
T Consensus 205 ~d~~~A~~wy~~A--a~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 205 RDLKKAFRWYKKA--AEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cCHHHHHHHHHHH--HHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 3677888888777 33342 22222222 344444 6667777777777665554444443
No 392
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=64.75 E-value=1.3e+02 Score=28.58 Aligned_cols=45 Identities=16% Similarity=-0.039 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 006010 315 KAVSLLDRMVASKCMPNEVTYGTIINGLVK----LGRAVDGARVLMSMEERK 362 (664)
Q Consensus 315 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 362 (664)
.|...|.++...+ +......+...|.. ..+..+|..+|....+.|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 4555555555544 33333333333322 224555555555555554
No 393
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=64.44 E-value=56 Score=29.30 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=21.5
Q ss_pred cCCChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhh
Q 006010 484 EDGKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEML 534 (664)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (664)
+.++.+.|.+++.+.... .|+ ...|-.+...-.+.|+++.|.+.|++.+
T Consensus 7 ~~~D~~aaaely~qal~l--ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L 56 (287)
T COG4976 7 ESGDAEAAAELYNQALEL--APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL 56 (287)
T ss_pred ccCChHHHHHHHHHHhhc--CchhhhhhhhcchhhhhcccHHHHHHHHHHHH
Confidence 344444444444444432 222 2344444444444444444444444443
No 394
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.67 E-value=2.2e+02 Score=30.73 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=22.9
Q ss_pred HHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010 422 EEILFEMINNGCAAN---AFTYSSLMKGFFESGKGHKAVEIWKDMAK 465 (664)
Q Consensus 422 ~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 465 (664)
..++.+|.+.-..|+ ..+...++-.|....+++..+++.+.+..
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh
Confidence 344555554322222 34445555556566666666666666655
No 395
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=63.54 E-value=22 Score=26.62 Aligned_cols=58 Identities=9% Similarity=0.020 Sum_probs=40.2
Q ss_pred HHHHhhhcCCcchHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccchHHHHHHHHHhhhc
Q 006010 606 LAIRLFKRQRTSGGFKIVEVMLQKFLSP-QTSTWERVVQELCRPKRIQAAINKCWSNLY 663 (664)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 663 (664)
++..+...|++++|++.+-.+++..-.. +-..-..++..+...|.-+.....+++.|+
T Consensus 28 lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 28 LADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4445999999999999999998873222 456667888888888887766666676653
No 396
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.41 E-value=17 Score=23.86 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=25.4
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHH
Q 006010 605 ELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERV 641 (664)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 641 (664)
.++..+.+.|++++|.++.+.+++ +.|+..-...|
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 355569999999999999999998 57766444443
No 397
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=61.59 E-value=80 Score=28.60 Aligned_cols=103 Identities=13% Similarity=0.123 Sum_probs=51.2
Q ss_pred HHHcCCHHHHHHHHHHhhhcCCCCCCCHh--HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhcc
Q 006010 517 LCNAGSVEEALKLFNEMLCLEPKSQPDVF--TYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLE 594 (664)
Q Consensus 517 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 594 (664)
+...|+++.|+++.+-++.... ..|+.. ++-+++. ++..+......+.|-..+.... ..+..+...-+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l-~~Pd~f~R~~~t~va--------eev~~~A~~~~~ag~~~e~~~~-~~~~~l~~~~d 162 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGL-TMPDQFRRTLANFVA--------EEVANAALKAASAGESVEPYFL-RVFLDLTTEWD 162 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCC-CCCccccCCchHHHH--------HHHHHHHHHHHHcCCCCChHHH-HHHHHHHhcCC
Confidence 4567788888888777753322 223221 1222211 2333333344444433333322 22222233334
Q ss_pred CCCCch-hhhHHHHHHh---------hhcCCcchHHHHHHHHHHc
Q 006010 595 APQDGT-DFLNELAIRL---------FKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 595 ~~~~~~-~~~~~l~~~~---------~~~g~~~~A~~~~~~~~~~ 629 (664)
.|+..+ .++...|..+ ...++...|..+++++.+.
T Consensus 163 mpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 163 MPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL 207 (230)
T ss_pred CChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh
Confidence 444443 3344555556 3456777899999999875
No 398
>PRK12798 chemotaxis protein; Reviewed
Probab=61.55 E-value=1.8e+02 Score=29.03 Aligned_cols=151 Identities=11% Similarity=0.086 Sum_probs=75.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHcCCChH
Q 006010 415 VGKPDEAEEILFEMINNGCAANAFTYSSLMKGFF-ESGKGHKAVEIWKDMAKNNCVYNEV----CYSVLIHGLCEDGKLR 489 (664)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~ 489 (664)
.|+.+++.+.+..+.....++....+..|+.+-. ...+..+|+++|+...-.- |... ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLla--PGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLA--PGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhC--CchHHHHHHHHHhhHHHHhcCcHH
Confidence 5677777777777666555666666666665433 3456677777777665432 3222 2333344455666766
Q ss_pred HHHHHHHHHHhC-CCCcCHHh-HHHHHHHHHHcCC---HHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHH
Q 006010 490 EARMVWTQMLSR-GCKPDVVA-YSSMIHGLCNAGS---VEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSI 564 (664)
Q Consensus 490 ~A~~~~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 564 (664)
++..+-...... ...|=..- +..+..++.+.++ .+.-..++..| ++.. -...|-.+.+.-...|+.+-|.
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~---d~~~--q~~lYL~iAR~Ali~Gk~~lA~ 277 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFM---DPER--QRELYLRIARAALIDGKTELAR 277 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhc---Cchh--HHHHHHHHHHHHHHcCcHHHHH
Confidence 665554444332 11121111 1222333333332 22222233322 1111 2335555666666667777666
Q ss_pred HHHHHHHH
Q 006010 565 DLLNSMMD 572 (664)
Q Consensus 565 ~~~~~~~~ 572 (664)
..-++...
T Consensus 278 ~As~~A~~ 285 (421)
T PRK12798 278 FASERALK 285 (421)
T ss_pred HHHHHHHH
Confidence 66666664
No 399
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=61.45 E-value=1.3e+02 Score=27.28 Aligned_cols=47 Identities=17% Similarity=0.384 Sum_probs=29.0
Q ss_pred CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010 540 SQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA 588 (664)
Q Consensus 540 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 588 (664)
..|.+.....++..|. .+++++|.+.+.++-+.|..|.... +.+.+.
T Consensus 235 d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv 281 (333)
T KOG0991|consen 235 DEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDII-TTLFRV 281 (333)
T ss_pred CCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHH-HHHHHH
Confidence 3455555566665544 4677888888888777777775532 334444
No 400
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.62 E-value=1.4e+02 Score=27.10 Aligned_cols=25 Identities=4% Similarity=0.016 Sum_probs=15.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC
Q 006010 269 INGLCKNGELGRAAKLVDNMFLKGC 293 (664)
Q Consensus 269 i~~~~~~g~~~~a~~~~~~~~~~g~ 293 (664)
...-...+++.+|+++|++.....+
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344456777777777777655533
No 401
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=59.56 E-value=54 Score=34.30 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=40.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCC--CCcCHHhHHHHHHHHHHcCCHH------HHHHHHHHhhhcCCCCCCCHhHHH
Q 006010 477 VLIHGLCEDGKLREARMVWTQMLSRG--CKPDVVAYSSMIHGLCNAGSVE------EALKLFNEMLCLEPKSQPDVFTYN 548 (664)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~~ 548 (664)
+++.+|...|++..+.++++.+.... -+.=...++..++.+.+.|.++ .|.+++++. . ..-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a--~---ln~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA--R---LNGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh--h---cCCcchHHH
Confidence 56677777777777777777766542 1112345566666666666543 345555544 1 333555665
Q ss_pred HHHHH
Q 006010 549 ILLNA 553 (664)
Q Consensus 549 ~l~~~ 553 (664)
.|..+
T Consensus 108 ll~~~ 112 (1117)
T COG5108 108 LLCQA 112 (1117)
T ss_pred HHHHh
Confidence 55544
No 402
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.08 E-value=2.8e+02 Score=30.59 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=40.4
Q ss_pred HHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcC
Q 006010 89 LIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEG 168 (664)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (664)
+-..|...|+|+.|.++-..- +..-..++..-+..|.+.+++..|-++|.++. ..+..+.--+....
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~---------~~FEEVaLKFl~~~ 430 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAETL---------SSFEEVALKFLEIN 430 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---------hhHHHHHHHHHhcC
Confidence 445667777777776543322 11123345556666777788888888887662 23444444555555
Q ss_pred CHh
Q 006010 169 LYH 171 (664)
Q Consensus 169 ~~~ 171 (664)
+.+
T Consensus 431 ~~~ 433 (911)
T KOG2034|consen 431 QER 433 (911)
T ss_pred CHH
Confidence 555
No 403
>PRK10941 hypothetical protein; Provisional
Probab=58.52 E-value=1.5e+02 Score=27.84 Aligned_cols=75 Identities=13% Similarity=0.130 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHh
Q 006010 511 SSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDR-GCDPDLVTCNIFLTA 588 (664)
Q Consensus 511 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~ 588 (664)
+.+-.+|.+.++++.|.++.+.++...|+ ++.-+..-.-.|.+.|.+..|..-++..++. .-.|+.......+..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~---dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPE---DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 44555667777777777777777655444 4455555666677777777777777777653 233444444444444
No 404
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=57.80 E-value=2.4e+02 Score=29.29 Aligned_cols=249 Identities=15% Similarity=0.138 Sum_probs=122.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHH
Q 006010 369 IYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCA--ANAFTYSSLMKG 446 (664)
Q Consensus 369 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 446 (664)
.+.-.+..+...+...+++.+.++.... ...|..+...+...|...+|...+-+-.+.+-+ ........++..
T Consensus 305 ~~~r~v~~l~~a~~~~e~i~~~~~ea~~-----~~~yl~~v~llle~~~~~~a~~wl~~~~r~a~~q~~t~q~~q~l~el 379 (587)
T COG4715 305 VVDREVPALASAGLQHEAIRLCEREAEG-----PGSYLDLVELLLESGEPSKAELWLARGIRTAREQLQTTQLPQTLAEL 379 (587)
T ss_pred HHHHhhhhhccchhhHHHHHHHHHHhcC-----cccHHHHHHHHHhcCChhHHHHHHHHHHhhhhHhhhhhhhHHHHHHH
Confidence 4455566777788888888887776543 345666777788888888877766555544322 233344567777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCC--
Q 006010 447 FFESGKGHKAVEIWKDMAKNNCVYNEVCYSVL--IHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGS-- 522 (664)
Q Consensus 447 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-- 522 (664)
+...|+.-.|.++-+..-... |+...|-.| ...+...|+.+....+... +.|..| +..+..++-..|-
T Consensus 380 ~~~~g~~~~a~~Laq~~F~r~--p~~~sy~~lw~~~~~~gi~~~e~~~a~~~~--~~~~~p----~~~~~~~l~~~g~~~ 451 (587)
T COG4715 380 KEEEGRLGFAAELAQEAFFRT--PNGRSYLGLWLAAVYAGIGREEREAALAYL--EVGESP----FAIWPGALPLTGLLW 451 (587)
T ss_pred HHhhcchHHHHHHHHHHccCC--CCccchhhHHHHHHHhhhchHHHHHHHHHH--HhccCc----hhhhhhhhhhcccCC
Confidence 777888887777766655543 555444433 2333444444433333222 222333 1111111111111
Q ss_pred HHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhc--cCCCCch
Q 006010 523 VEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKL--EAPQDGT 600 (664)
Q Consensus 523 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~~~~ 600 (664)
......+... ....++.++.......++.+.+.+....+..--..++..+.....+.. ..|+.+.
T Consensus 452 p~d~~~li~~-------------~~~~~~~~aiq~~~~~~l~ewl~e~a~~~~s~~~~~~~i~~n~i~~A~~~~~peia~ 518 (587)
T COG4715 452 PADRRTLITR-------------LLSLLIEGAIQEKADLELAEWLAELAKEGVSALRYALHIVENKIVNAVPEKYPEIAL 518 (587)
T ss_pred cchhhhHhhh-------------hHHHHHHHHHHhhchHHHHHHHHHHHhhhHHHhhhHHhHHHHHHHhhhhccCchHHH
Confidence 1111111111 122334445555555555555544443333322223333332222211 2244444
Q ss_pred hhhHHHHHHhhh---cCCcchHHHHHHHHHHc-CCCCChHHHHHHHH
Q 006010 601 DFLNELAIRLFK---RQRTSGGFKIVEVMLQK-FLSPQTSTWERVVQ 643 (664)
Q Consensus 601 ~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~ 643 (664)
.+...++..+.. ..-|.+|...++++... +-.++...|..+..
T Consensus 519 ~~~~r~Ae~li~~t~~~~Y~EA~~~Lqki~~~l~q~g~~~~w~~y~~ 565 (587)
T COG4715 519 LIWKRVAERLISETKVRAYAEAATHLQKIKETLEQRGTKQAWEAYLP 565 (587)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 444444444444 33566787777777655 34555555555443
No 405
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=57.16 E-value=52 Score=33.91 Aligned_cols=117 Identities=12% Similarity=0.132 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHh-CCCcchHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 006010 84 STFYSLIQHYAN-SGDFKSLEMVLYRMRREKRVVL-EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVL 161 (664)
Q Consensus 84 ~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 161 (664)
-.+..+...|.+ .|+..+|...+........+.. ......++..+.+.|...+|--++.........-. .-+..+.
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t--~n~y~l~ 290 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFT--SNYYTLG 290 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcccc--ccceeHH
Confidence 344555666654 5889999998888776543332 33567888888999999888888776654322211 1256677
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHH
Q 006010 162 NVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVC 203 (664)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 203 (664)
+.++..+++......|....+.+ .++.|....-..+|.+..
T Consensus 291 ~i~aml~~~N~S~~~ydha~k~~-p~f~q~~~q~~~~ISC~~ 331 (886)
T KOG4507|consen 291 NIYAMLGEYNHSVLCYDHALQAR-PGFEQAIKQRKHAISCQQ 331 (886)
T ss_pred HHHHHHhhhhhhhhhhhhhhccC-cchhHHHHHHHHHHHHHH
Confidence 78888888888888888877643 234444444444444443
No 406
>PF13934 ELYS: Nuclear pore complex assembly
Probab=56.13 E-value=1.6e+02 Score=26.79 Aligned_cols=92 Identities=14% Similarity=0.156 Sum_probs=45.5
Q ss_pred cCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHH
Q 006010 484 EDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHS 563 (664)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 563 (664)
..+++++|.+.+..- .+.|+ --..++.++...|+.+.|..+++.+ .-+. .+......++.. ...+.+.+|
T Consensus 90 D~~~~~~A~~~L~~p---s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~--~p~l--~s~~~~~~~~~~-La~~~v~EA 159 (226)
T PF13934_consen 90 DHGDFEEALELLSHP---SLIPW--FPDKILQALLRRGDPKLALRYLRAV--GPPL--SSPEALTLYFVA-LANGLVTEA 159 (226)
T ss_pred ChHhHHHHHHHhCCC---CCCcc--cHHHHHHHHHHCCChhHHHHHHHhc--CCCC--CCHHHHHHHHHH-HHcCCHHHH
Confidence 456666666665222 11222 1123566666677777777777654 1111 122222233333 555777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010 564 IDLLNSMMDRGCDPDLVTCNIFLTA 588 (664)
Q Consensus 564 ~~~~~~~~~~~~~p~~~~~~~ll~~ 588 (664)
+.+.+...+. -....+..++..
T Consensus 160 f~~~R~~~~~---~~~~l~e~l~~~ 181 (226)
T PF13934_consen 160 FSFQRSYPDE---LRRRLFEQLLEH 181 (226)
T ss_pred HHHHHhCchh---hhHHHHHHHHHH
Confidence 7766665431 113345555555
No 407
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=55.84 E-value=22 Score=19.65 Aligned_cols=30 Identities=20% Similarity=0.249 Sum_probs=23.4
Q ss_pred CCcchHHHHHHHHHHcCCCCChHHHHHHHHH
Q 006010 614 QRTSGGFKIVEVMLQKFLSPQTSTWERVVQE 644 (664)
Q Consensus 614 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 644 (664)
|+.+.|..+|+++.+. .+-++.+|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~-~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEK-FPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHH-CCCChHHHHHHHHH
Confidence 4678899999999986 45678888887754
No 408
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=55.29 E-value=3.3e+02 Score=30.11 Aligned_cols=122 Identities=11% Similarity=0.144 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCC--cCHHhHHHHHHHHHHcCC
Q 006010 453 GHKAVEIWKDMAK--------NNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCK--PDVVAYSSMIHGLCNAGS 522 (664)
Q Consensus 453 ~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~ 522 (664)
.++...+++.+.. .++..+......++... .|+..+++.+++.+...... .+... =.
T Consensus 170 ~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------It 236 (725)
T PRK13341 170 DEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------IT 236 (725)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------cc
Confidence 4555666666554 23344555555555432 78888888888776532100 00000 01
Q ss_pred HHHHHHHHHHh-hhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010 523 VEEALKLFNEM-LCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA 588 (664)
Q Consensus 523 ~~~A~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 588 (664)
.+.+.+.+.+. ...+....+.......++.. ++.++++.|+.++.+|++.|..|....-..+..+
T Consensus 237 ~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~a 302 (725)
T PRK13341 237 LAIAEESIQQRAVLYDKEGDAHFDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAA 302 (725)
T ss_pred HHHHHHHHHHhhhhcccCCCCCHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22233333321 00111112333333444443 3568999999999999999988876554444444
No 409
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.25 E-value=46 Score=25.10 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=8.4
Q ss_pred HHhcCChhHHHHHHhhc
Q 006010 202 VCRLGLVDNAIQLFREM 218 (664)
Q Consensus 202 ~~~~g~~~~A~~~~~~~ 218 (664)
....|++++|.+.+++.
T Consensus 51 ~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 33445555555555544
No 410
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.12 E-value=1.7e+02 Score=26.74 Aligned_cols=27 Identities=7% Similarity=-0.034 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHH
Q 006010 84 STFYSLIQHYANSGDFKSLEMVLYRMR 110 (664)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 110 (664)
++...-.+.+.+.|++.+|...|..++
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi 205 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAI 205 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHH
Confidence 344445566667777777766666544
No 411
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=55.09 E-value=84 Score=23.24 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=18.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 006010 379 KEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEA 421 (664)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 421 (664)
..|+.+.|.++++.+. .| +..|..++.++...|..+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 3455555555555555 32 22444555555555544433
No 412
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.71 E-value=32 Score=32.29 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=26.5
Q ss_pred CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 006010 224 EPDIYT-YCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTF 265 (664)
Q Consensus 224 ~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 265 (664)
.||.++ |+..|....+.||+++|+.++++....|+.--..+|
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 344443 556777777777777777777777777655333333
No 413
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.88 E-value=3.6e+02 Score=30.23 Aligned_cols=39 Identities=3% Similarity=0.125 Sum_probs=26.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 006010 306 GLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVK 344 (664)
Q Consensus 306 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 344 (664)
.|......+-+..+++.+....-.++....+.++..|++
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 345566677778888887765545566677777777664
No 414
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=53.59 E-value=1.9e+02 Score=26.98 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=14.0
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHH
Q 006010 506 DVVAYSSMIHGLCNAGSVEEALKLF 530 (664)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~A~~~~ 530 (664)
++.....++..|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3445555566666666666666665
No 415
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.14 E-value=1e+02 Score=24.66 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=18.1
Q ss_pred CCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 539 KSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 539 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
+..|++.....-+++|.+.+++.-|+++|+-+..
T Consensus 79 DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 79 DLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555543
No 416
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=52.95 E-value=43 Score=22.87 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=8.4
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 006010 303 LIHGLCLKGNLDKAVSLLDRM 323 (664)
Q Consensus 303 l~~~~~~~g~~~~a~~~~~~~ 323 (664)
++.++...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444433
No 417
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.34 E-value=11 Score=35.67 Aligned_cols=83 Identities=17% Similarity=0.045 Sum_probs=45.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCH-HhHHHHHHHHHHcCCHHHHH
Q 006010 449 ESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDV-VAYSSMIHGLCNAGSVEEAL 527 (664)
Q Consensus 449 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~ 527 (664)
..|.++.|++.+...+... ++....|..-.+++.+.+++..|++=+...+.. .||. .-|-.-..+....|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 4556666666666666554 444455555555566666666666655555542 3442 22333333444456666666
Q ss_pred HHHHHhh
Q 006010 528 KLFNEML 534 (664)
Q Consensus 528 ~~~~~~~ 534 (664)
+.+..+.
T Consensus 203 ~dl~~a~ 209 (377)
T KOG1308|consen 203 HDLALAC 209 (377)
T ss_pred HHHHHHH
Confidence 6666653
No 418
>PHA02875 ankyrin repeat protein; Provisional
Probab=52.29 E-value=2.2e+02 Score=28.88 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=7.5
Q ss_pred HHHHhcCChhHHHHHH
Q 006010 270 NGLCKNGELGRAAKLV 285 (664)
Q Consensus 270 ~~~~~~g~~~~a~~~~ 285 (664)
...+..|+.+.+..++
T Consensus 73 ~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 73 HDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHCCCHHHHHHHH
Confidence 3344555555444443
No 419
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=51.37 E-value=26 Score=20.71 Aligned_cols=24 Identities=8% Similarity=0.003 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcccchHHHHHHHHH
Q 006010 636 STWERVVQELCRPKRIQAAINKCW 659 (664)
Q Consensus 636 ~~~~~l~~~~~~~g~~~~A~~~~~ 659 (664)
+.|..++-.+...|++++|+++++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456677778888899999988844
No 420
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.15 E-value=1.2e+02 Score=24.37 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010 246 AVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK 291 (664)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (664)
..+-++.+...++.|++......++++.+.+|+..|.++|+-.+.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344445555556666666666666666666666666666665443
No 421
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.04 E-value=22 Score=32.85 Aligned_cols=59 Identities=17% Similarity=0.111 Sum_probs=46.8
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHc----C-CCCChHHHHHHHHHhcccchHHHHHHHHHhhhc
Q 006010 605 ELAIRLFKRQRTSGGFKIVEVMLQK----F-LSPQTSTWERVVQELCRPKRIQAAINKCWSNLY 663 (664)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 663 (664)
.++..|.+.|++++|.++++.+... | ..+...+...+..+..+.|+.++.+.++++-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls 246 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS 246 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 4555699999999999999999643 1 123456777888999999999999999887653
No 422
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=50.99 E-value=1.1e+02 Score=28.04 Aligned_cols=46 Identities=15% Similarity=0.021 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHc---CCCCChHHHHHH-----HHHhcccchHHHHHHHHHhhh
Q 006010 617 SGGFKIVEVMLQK---FLSPQTSTWERV-----VQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 617 ~~A~~~~~~~~~~---~~~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~l 662 (664)
+.|.+.|+++.+. .++|+..++-.+ +-.|-..|+.++|.++.++.+
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4566666665443 256655544333 334566899999998877654
No 423
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=50.22 E-value=41 Score=33.69 Aligned_cols=105 Identities=11% Similarity=0.006 Sum_probs=57.3
Q ss_pred HHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCC
Q 006010 90 IQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGL 169 (664)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (664)
+......+.|+.|..++..+++..+. ....+..-..++.+.+++..|+.-+.+.++. .+.....|.--+.++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHHH
Confidence 44455566677777777777765532 3333444445666677777777666666543 12223344444445555566
Q ss_pred HhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH
Q 006010 170 YHRALEFYNHIVNAKHMNILPNTLTFNLVIKTV 202 (664)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 202 (664)
+.+|+..|+.... +.|+..-....+.-|
T Consensus 88 ~~~A~~~l~~~~~-----l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKK-----LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhh-----cCcCcHHHHHHHHHH
Confidence 6666666666654 455555444444433
No 424
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.79 E-value=3e+02 Score=28.07 Aligned_cols=125 Identities=12% Similarity=0.110 Sum_probs=70.0
Q ss_pred HcCCChHHHHHHHHHHHhCCCCcCHHhH--HHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHH------H--HHH
Q 006010 483 CEDGKLREARMVWTQMLSRGCKPDVVAY--SSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYN------I--LLN 552 (664)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~------~--l~~ 552 (664)
+..+.++.|..-|....+.--..|...+ ..+.-.|.+.|+.+.-.++++.+ ..+|..++. . ++.
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i------~p~nt~s~ssq~l~a~~~~v~ 451 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI------GPLNTNSLSSQRLEASILYVY 451 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc------CCCCCCcchHHHHHHHHHHHH
Confidence 3456677777777666554222332222 34555677778777777777765 222221111 1 112
Q ss_pred H--HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 553 A--LCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 553 ~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
+ ...++++.+|..++.+-.+.. +...++.+... .+--|+.+....|+..++.+..+-..+.
T Consensus 452 glfaf~qn~lnEaK~~l~e~Lkma---naed~~rL~a~-------------~LvLLs~v~lslgn~~es~nmvrpamql 514 (629)
T KOG2300|consen 452 GLFAFKQNDLNEAKRFLRETLKMA---NAEDLNRLTAC-------------SLVLLSHVFLSLGNTVESRNMVRPAMQL 514 (629)
T ss_pred HHHHHHhccHHHHHHHHHHHHhhc---chhhHHHHHHH-------------HHHHHHHHHHHhcchHHHHhccchHHHH
Confidence 2 246889999999998887632 44444333322 1223445567778888887777655443
No 425
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.88 E-value=2.1e+02 Score=26.12 Aligned_cols=64 Identities=20% Similarity=0.179 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006010 510 YSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD 578 (664)
Q Consensus 510 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 578 (664)
+..+.+++...|++-++++.-.+++...++ |...|-.-..+....-+.++|..-|...++ ..|.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~---nvKA~frRakAhaa~Wn~~eA~~D~~~vL~--ldps 296 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPG---NVKAYFRRAKAHAAVWNEAEAKADLQKVLE--LDPS 296 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--cChh
Confidence 344455666778888999988888765555 666666666666667788888888888887 4554
No 426
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=48.00 E-value=2.9e+02 Score=27.41 Aligned_cols=160 Identities=15% Similarity=0.093 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHhCCCCcCHHhHHHHHH--------HHHHcCCHHHHHHHHHHhh---
Q 006010 468 CVYNEVCYSVLIHGLCED--GKLREARMVWTQMLSRGCKPDVVAYSSMIH--------GLCNAGSVEEALKLFNEML--- 534 (664)
Q Consensus 468 ~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~--------~~~~~g~~~~A~~~~~~~~--- 534 (664)
+++...+|-.++-.+.-. +++++|.++-+..+..-..-+..++..+.. +|...|+...-...+...+
T Consensus 120 ~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA 199 (493)
T KOG2581|consen 120 LPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA 199 (493)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh
Q ss_pred hcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcC
Q 006010 535 CLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQ 614 (664)
Q Consensus 535 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g 614 (664)
.+.....--.+..|.+++.|...+.++.|..+..+. ..|+...-+...+- +-.+|.+-.-++
T Consensus 200 tLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~----~~pe~~snne~ARY--------------~yY~GrIkaiql 261 (493)
T KOG2581|consen 200 TLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKS----VYPEAASNNEWARY--------------LYYLGRIKAIQL 261 (493)
T ss_pred hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcc----cCccccccHHHHHH--------------HHHHhhHHHhhc
Q ss_pred CcchHHHHHHHHHHc-------CCCCChHHHHHHHHHh
Q 006010 615 RTSGGFKIVEVMLQK-------FLSPQTSTWERVVQEL 645 (664)
Q Consensus 615 ~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~ 645 (664)
++..|.+.+-++..+ |+.....-|-.++..+
T Consensus 262 dYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll 299 (493)
T KOG2581|consen 262 DYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELL 299 (493)
T ss_pred chhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHH
No 427
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.48 E-value=2.1e+02 Score=26.22 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=33.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHH
Q 006010 372 TLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCR-VGKPDEAEEILFEMIN 430 (664)
Q Consensus 372 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~ 430 (664)
.++..+-+.++++++...++++...+...+..-.+.+-.+|-. .|....+.+++....+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3455566777777777777777777666666666655555522 3444455555544443
No 428
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.45 E-value=3e+02 Score=27.47 Aligned_cols=18 Identities=22% Similarity=0.159 Sum_probs=9.8
Q ss_pred hcCChhHHHHHHHHHHHC
Q 006010 414 RVGKPDEAEEILFEMINN 431 (664)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~ 431 (664)
..+++..|.++++.+...
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 455555555555555544
No 429
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.25 E-value=1.5e+02 Score=23.90 Aligned_cols=57 Identities=12% Similarity=0.247 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 006010 121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNH 179 (664)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 179 (664)
+..+--.|++.-+ ++.++|..|....-....+..|...+..+-..|++++|.++|+.
T Consensus 68 ylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 68 YLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3333333444333 67777777755444445566777777777777777777777764
No 430
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.95 E-value=40 Score=25.36 Aligned_cols=43 Identities=9% Similarity=-0.097 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHh
Q 006010 618 GGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWS 660 (664)
Q Consensus 618 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 660 (664)
+-.+.++++..++...-|....+|+-.|.+.|+-+.|++.|+.
T Consensus 55 ~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 55 ALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 3456677777776666778888888889999999888887764
No 431
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.83 E-value=1.3e+02 Score=26.08 Aligned_cols=22 Identities=0% Similarity=0.033 Sum_probs=19.5
Q ss_pred HHHhhhcCCcchHHHHHHHHHH
Q 006010 607 AIRLFKRQRTSGGFKIVEVMLQ 628 (664)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~ 628 (664)
+.+|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3459999999999999999986
No 432
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=46.81 E-value=1.3e+02 Score=24.22 Aligned_cols=20 Identities=10% Similarity=0.064 Sum_probs=9.0
Q ss_pred HHHHHHHHhcCChhHHHHHH
Q 006010 196 NLVIKTVCRLGLVDNAIQLF 215 (664)
Q Consensus 196 ~~ll~~~~~~g~~~~A~~~~ 215 (664)
......+-..|++.+|.++|
T Consensus 103 e~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 103 EEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 33333444445555554444
No 433
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.71 E-value=62 Score=22.09 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=11.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 006010 407 ALIDGLCRVGKPDEAEEILFEMI 429 (664)
Q Consensus 407 ~li~~~~~~~~~~~a~~~~~~~~ 429 (664)
.+|.++...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555555443
No 434
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.18 E-value=2.8e+02 Score=27.73 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=27.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--hcCChhHHHHHHHHHHHC
Q 006010 378 FKEGKAEDAMKLWKQMMEKGCKPNTV--VYSALIDGLC--RVGKPDEAEEILFEMINN 431 (664)
Q Consensus 378 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~~~~~~a~~~~~~~~~~ 431 (664)
.+.+++..|.++++.+... +.++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3556666666666666654 332222 2333333333 244566666666665543
No 435
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.17 E-value=23 Score=28.52 Aligned_cols=30 Identities=30% Similarity=0.589 Sum_probs=20.2
Q ss_pred CCChHHHHHHHHHHHhCCCCcCHHhHHHHHHH
Q 006010 485 DGKLREARMVWTQMLSRGCKPDVVAYSSMIHG 516 (664)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 516 (664)
.|.-..|..+|.+|++.|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3555667777888887777777 56666554
No 436
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.17 E-value=95 Score=30.99 Aligned_cols=57 Identities=18% Similarity=-0.000 Sum_probs=45.0
Q ss_pred HHHHhhhcCCcchHHHHHHHHHHc--C----CCC-ChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 606 LAIRLFKRQRTSGGFKIVEVMLQK--F----LSP-QTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~--~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
|.++++-.|++..|.++++.+.=. + +++ ...++.+++-+|...+++.+|++.|.++|
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446689999999999998875311 1 222 34778999999999999999999998876
No 437
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=45.59 E-value=2.9e+02 Score=26.68 Aligned_cols=118 Identities=12% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHhhhhhccCCCCchhhh
Q 006010 527 LKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDR---GCDPDLVTCNIFLTALKEKLEAPQDGTDFL 603 (664)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 603 (664)
.++|...+..-.+..........++....+.++.++|+++++++.+. --.|+.+.+.....+
T Consensus 58 l~lY~NFvsefe~kINplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~--------------- 122 (380)
T KOG2908|consen 58 LQLYLNFVSEFETKINPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIA--------------- 122 (380)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH---------------
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHH-----cCCCCCh-HHHHHHHHHhccc-chHHHHHHHHHhhhc
Q 006010 604 NELAIRLFKRQRTSGGFKIVEVMLQ-----KFLSPQT-STWERVVQELCRP-KRIQAAINKCWSNLY 663 (664)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~l~ 663 (664)
.++...|+.+++.+.++...+ .|++|+. ..|+.+..-|.+. |++..+.+-+-+=|.
T Consensus 123 ----r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL~ 185 (380)
T KOG2908|consen 123 ----RLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYRHALLYLG 185 (380)
T ss_pred ----HHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhc
No 438
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.26 E-value=34 Score=27.60 Aligned_cols=33 Identities=18% Similarity=0.451 Sum_probs=27.0
Q ss_pred hhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHH
Q 006010 610 LFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQE 644 (664)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 644 (664)
+.+.|.-.+|.++|++|++.|-+||. |..|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 66778889999999999999888764 6666654
No 439
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=44.99 E-value=1.4e+02 Score=22.85 Aligned_cols=85 Identities=25% Similarity=0.257 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 006010 488 LREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLL 567 (664)
Q Consensus 488 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 567 (664)
.++|..+-+-+...+-. ...+-..-+..+.+.|+|++|..+.+.. ..||...|-++-. .+.|--+++...+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~------~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL------CYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC------CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 45555555544443211 1222222344566778888888776554 4677777755543 4667667777777
Q ss_pred HHHHHCCCCCCHHHH
Q 006010 568 NSMMDRGCDPDLVTC 582 (664)
Q Consensus 568 ~~~~~~~~~p~~~~~ 582 (664)
.+|...| .|....|
T Consensus 92 ~rla~sg-~p~lq~F 105 (115)
T TIGR02508 92 NRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHhCC-CHHHHHH
Confidence 7776554 4444433
No 440
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=44.69 E-value=7.6e+02 Score=31.27 Aligned_cols=321 Identities=12% Similarity=0.076 Sum_probs=160.8
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhCC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Q 006010 88 SLIQHYANSGDFKSLEMVLYRMRREK--RVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVII 165 (664)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (664)
.+..+-.+.+.+..|...+++..... .......+..+...|+..++++....+...-. ..|+. ..-+....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~----a~~sl---~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF----ADPSL---YQQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh----cCccH---HHHHHHHH
Confidence 34556667788888888888752111 11122233344448888888888877776321 12332 23344455
Q ss_pred HcCCHhHHHHHHHHHHhcccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHH-HHHHHhcCCh
Q 006010 166 QEGLYHRALEFYNHIVNAKHMNILPN-TLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTL-MDGLCKENRL 243 (664)
Q Consensus 166 ~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~ 243 (664)
..|++..|...|+.+.+ ..|+ ...++-++......|.++..+-..+-....- .+....++++ +.+..+.+++
T Consensus 1461 ~~g~~~da~~Cye~~~q-----~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQ-----KDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred hhccHHHHHHHHHHhhc-----CCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcch
Confidence 67899999999999976 3344 5577777777777888888777666554432 2333333333 3444667777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHh--cCChhHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHhc
Q 006010 244 DEAVLLLDEMQVDGCFPTPVTFNVL--INGLCK--NGELGRAAKLVDNMFLKGCLP---------NEVTYNTLIHGLCLK 310 (664)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~--~g~~~~a~~~~~~~~~~g~~p---------~~~~~~~l~~~~~~~ 310 (664)
+.....+. .. +..+|... .....+ ..|.-.-.+.++.+++.-+.| -...|..++..+.-.
T Consensus 1535 D~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1535 DLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred hhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH
Confidence 77666655 11 22223222 222222 222222223333333221110 012333333332211
Q ss_pred CChHHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH-HHHc----CCC-CCHHHHHHHHHHHHhcCCh
Q 006010 311 GNLDKAVSLLDRMV-ASKCMPNEVTYGTIINGLVKLGRAVDGARVLMS-MEER----KFH-VNEYIYSTLISGLFKEGKA 383 (664)
Q Consensus 311 g~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~----~~~-~~~~~~~~l~~~~~~~~~~ 383 (664)
. .+...+.+.... .....-+...|..-+..-....+..+-+-.+.+ +... +.. --..+|....+...++|++
T Consensus 1608 e-l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1608 E-LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred H-HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 1 111111111100 000111112222222211111111111111111 1111 111 1345677777778889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006010 384 EDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNG 432 (664)
Q Consensus 384 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 432 (664)
+.|...+-...+.+ . +..+--.....-..|+...|..++++.++..
T Consensus 1687 q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 99988777766654 2 2344455666778899999999999888654
No 441
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.44 E-value=1.7e+02 Score=23.63 Aligned_cols=47 Identities=13% Similarity=0.055 Sum_probs=38.9
Q ss_pred cchHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 616 TSGGFKIVEVMLQKFLSP-QTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 616 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
.+++.++|+.|..+|+-- -+..|...+..+...|++++|.++++..+
T Consensus 79 ~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 79 SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 349999999999987644 55788899999999999999999998754
No 442
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.21 E-value=4e+02 Score=27.92 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=63.8
Q ss_pred hcCChHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh---C----CC-------
Q 006010 449 ESGKGHKAVEIWKDMAKNN-----------CVYNEVCYSVLIHGLCEDGKLREARMVWTQMLS---R----GC------- 503 (664)
Q Consensus 449 ~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~----~~------- 503 (664)
....++++...|....... .|..+.+.-.+...+...|+.+.|..+.++.+= . .+
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 3455677777776655432 122233444555666777777777777665431 1 01
Q ss_pred -----CcCH-HhHHHH---HHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHH-HHcCChhHHHHHHHHHH
Q 006010 504 -----KPDV-VAYSSM---IHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNAL-CKQSNISHSIDLLNSMM 571 (664)
Q Consensus 504 -----~p~~-~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~ 571 (664)
.|.. .-|.++ +..+.+.|-+..|.++-+-++++++. -|+...-.+|+.| .+..+|+-.+++++...
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~--eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPS--EDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc--CCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1111 122222 33445667777777777776554433 2334444455554 35566666666666664
No 443
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.02 E-value=3e+02 Score=26.43 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHcCCCCCHH----HH
Q 006010 335 YGTIINGLVKLGRAVDGARVLMSMEE----RKFHVNEYIYSTLI-SGLFKEGKAEDAMKLWKQMMEKGCKPNTV----VY 405 (664)
Q Consensus 335 ~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~ 405 (664)
+......||+.|+.+.|.+.+....+ .|.+.|...+..-+ -.|....-+.+-++..+.+.+.|...+.. +|
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY 186 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVY 186 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHH
Confidence 44445566667777666666655433 24444444333222 22333333445555555555555443322 22
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 006010 406 SALIDGLCRVGKPDEAEEILFEMIN 430 (664)
Q Consensus 406 ~~li~~~~~~~~~~~a~~~~~~~~~ 430 (664)
..+ .+....++.+|-.+|-+...
T Consensus 187 ~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 187 QGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHH--HHHHHHhHHHHHHHHHHHcc
Confidence 221 12234556666666655543
No 444
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=43.41 E-value=1.6e+02 Score=23.06 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCCCCh-HHHHHHHHHhcccchHHHHHHHHHhhhc
Q 006010 620 FKIVEVMLQKFLSPQT-STWERVVQELCRPKRIQAAINKCWSNLY 663 (664)
Q Consensus 620 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 663 (664)
.+-+.+... +.|+. .....+++-+...--++++.+.+.+.|+
T Consensus 64 ve~~s~a~~--Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 64 VECFSRAVE--LSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHHHhc--cChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 334444433 34433 4444555555556667777777777654
No 445
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.28 E-value=1.5e+02 Score=22.58 Aligned_cols=60 Identities=8% Similarity=-0.076 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010 523 VEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFL 586 (664)
Q Consensus 523 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 586 (664)
.+.-++.++++ ...+....+-....|.-.|.+.|+.+.|.+-|+.=.. .-|.+.+|..++
T Consensus 53 ~~~le~~~ek~--~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fmDFL 112 (121)
T COG4259 53 TAALEKYLEKI--GAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFMDFL 112 (121)
T ss_pred HHHHHHHHHHH--hhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHHHHH
Confidence 33445556665 3333333333445566677788888888887776554 567666655444
No 446
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=43.25 E-value=1.8e+02 Score=27.80 Aligned_cols=113 Identities=11% Similarity=0.106 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 006010 84 STFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNV 163 (664)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (664)
.+....-..|.++.+...--...+.+.+++...-...-..++-+-.+.|+..+|.+.|+.+.++.+...-......++.+
T Consensus 241 ~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEa 320 (556)
T KOG3807|consen 241 QALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEA 320 (556)
T ss_pred HHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHH
Q ss_pred HHHcCCHhHHHHHHHHHHhcccCCCCcCHH-HHHHHH
Q 006010 164 IIQEGLYHRALEFYNHIVNAKHMNILPNTL-TFNLVI 199 (664)
Q Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~ll 199 (664)
+....-+.+...++-+.-+ ...+.+.. .|...+
T Consensus 321 lLE~QAYADvqavLakYDd---islPkSA~icYTaAL 354 (556)
T KOG3807|consen 321 LLELQAYADVQAVLAKYDD---ISLPKSAAICYTAAL 354 (556)
T ss_pred HHHHHHHHHHHHHHHhhcc---ccCcchHHHHHHHHH
No 447
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=43.07 E-value=4.7e+02 Score=28.41 Aligned_cols=164 Identities=13% Similarity=0.071 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCH-HHHHHH
Q 006010 120 SFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNT-LTFNLV 198 (664)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~l 198 (664)
+-..+-..|...|.+++|++.--..-..+...++...+..++.-|+.. -.+.+.+.++.-.. ...+.+.. ...+.+
T Consensus 61 AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~~~~~~--~~~iD~rL~~iv~rm 137 (929)
T KOG2062|consen 61 AALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETYKNPEQ--KSPIDQRLRDIVERM 137 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHhcCccc--cCCCCHHHHHHHHHH
Confidence 335566788899999999998766544555566665555555544432 11223333321110 01121111 123334
Q ss_pred HHHHHhcCChhHHHH---------HHhh-cccCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHh---CCCCCCHHH
Q 006010 199 IKTVCRLGLVDNAIQ---------LFRE-MPVRNCEPDIYTYCTLMDGLCKENR-LDEAVLLLDEMQV---DGCFPTPVT 264 (664)
Q Consensus 199 l~~~~~~g~~~~A~~---------~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~~ 264 (664)
+..|...+++..|+- ++++ +.+.. .+....+.++..+..... .+--.+++..+.+ ....||
T Consensus 138 i~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d--~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PD--- 212 (929)
T KOG2062|consen 138 IQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSD--SVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPD--- 212 (929)
T ss_pred HHHhhhhhHHHHHHhHHhhhhhHHHHHHHhcccc--ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCC---
Confidence 444444444333322 2222 12221 112233333333333222 1222233333322 222344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010 265 FNVLINGLCKNGELGRAAKLVDNMFLK 291 (664)
Q Consensus 265 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (664)
|..+..+|.-..+.+.+.++++++.+.
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 445677788888999999999998774
No 448
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=42.41 E-value=5.4e+02 Score=28.93 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006010 264 TFNVLINGLCKNGELGRAAKLVDNMFL 290 (664)
Q Consensus 264 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 290 (664)
++..-...+...|++..|.+++.++.+
T Consensus 1233 ~~~~a~~ha~~~~~yGr~lK~l~klie 1259 (1304)
T KOG1114|consen 1233 VWQIAKKHAKALGQYGRALKALLKLIE 1259 (1304)
T ss_pred heehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444555555555544443
No 449
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=41.84 E-value=1.9e+02 Score=23.38 Aligned_cols=45 Identities=13% Similarity=0.040 Sum_probs=37.3
Q ss_pred cchHHHHHHHHHHcCCCCC-hHHHHHHHHHhcccchHHHHHHHHHh
Q 006010 616 TSGGFKIVEVMLQKFLSPQ-TSTWERVVQELCRPKRIQAAINKCWS 660 (664)
Q Consensus 616 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 660 (664)
.+++.++|.-|..+|+-.. +..|......+-..|++.+|.++|+.
T Consensus 79 ~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 79 CDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3668899999999876544 46778889999999999999999874
No 450
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=41.84 E-value=3.8e+02 Score=27.00 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=11.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 006010 337 TIINGLVKLGRAVDGARVLMSM 358 (664)
Q Consensus 337 ~ll~~~~~~~~~~~a~~~~~~~ 358 (664)
-.+.-|...|+..+|.+...++
T Consensus 219 ~~l~eyv~~getrea~rciR~L 240 (645)
T KOG0403|consen 219 GNLIEYVEIGETREACRCIREL 240 (645)
T ss_pred HHHHHHHHcccHHHHHHHHHHh
Confidence 3444555556555555555444
No 451
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=41.17 E-value=1.3e+02 Score=26.48 Aligned_cols=33 Identities=6% Similarity=-0.006 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010 150 CKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 182 (664)
..|++..+..++..+...|+.++|....+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555555555543
No 452
>PF13934 ELYS: Nuclear pore complex assembly
Probab=41.04 E-value=2.8e+02 Score=25.23 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=53.1
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCC
Q 006010 128 YGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGL 207 (664)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 207 (664)
+...+++++|++.+..- ...|+ ....++.++...|+.+.|+.++..... . -.+......++.. ..++.
T Consensus 88 ~LD~~~~~~A~~~L~~p----s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p---~--l~s~~~~~~~~~~-La~~~ 155 (226)
T PF13934_consen 88 LLDHGDFEEALELLSHP----SLIPW--FPDKILQALLRRGDPKLALRYLRAVGP---P--LSSPEALTLYFVA-LANGL 155 (226)
T ss_pred HhChHhHHHHHHHhCCC----CCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCC---C--CCCHHHHHHHHHH-HHcCC
Confidence 34567777777776322 12222 223477777778888888888776532 1 1122222333333 55677
Q ss_pred hhHHHHHHhhcccCCCCCCHHHHHHHHHHHHh
Q 006010 208 VDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK 239 (664)
Q Consensus 208 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (664)
+.+|..+-+...... ....+..++..+..
T Consensus 156 v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 156 VTEAFSFQRSYPDEL---RRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHHHhCchhh---hHHHHHHHHHHHHH
Confidence 777777776665421 13355555555553
No 453
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=40.59 E-value=5.1e+02 Score=28.14 Aligned_cols=183 Identities=11% Similarity=0.146 Sum_probs=88.8
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 006010 136 EAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLF 215 (664)
Q Consensus 136 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 215 (664)
+.+...+.+.+...++....+-..+-..|.-.|++++|+++--..-. ...+.++...+..++.-|... -.+.+.+.+
T Consensus 41 d~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~--~F~Vd~~S~y~etivak~id~-yi~~~~~~~ 117 (929)
T KOG2062|consen 41 DSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGD--DFDVDENSDYVETIVAKCIDM-YIETASETY 117 (929)
T ss_pred hhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--cccccCccchhhHHHHHHHHH-HHHHHHHHh
Confidence 34444444444333332333334555678888999999987655421 244556666665555444322 123344444
Q ss_pred hhcc-cCCCCCCH-HHHHHHHHHHHhcCChhHHHH---------HHHHH-HhCCCCCCHHHHHHHHHHHHhcCC-hhHHH
Q 006010 216 REMP-VRNCEPDI-YTYCTLMDGLCKENRLDEAVL---------LLDEM-QVDGCFPTPVTFNVLINGLCKNGE-LGRAA 282 (664)
Q Consensus 216 ~~~~-~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~---------~~~~~-~~~~~~~~~~~~~~li~~~~~~g~-~~~a~ 282 (664)
+.-. ..++.+.. .....++..|...+++..|+. ++++. .+.. .+....+.++..+....+ -+--.
T Consensus 118 ~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d--~~~~~~~yll~l~~s~v~~~efR~ 195 (929)
T KOG2062|consen 118 KNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSD--SVIGNLTYLLELLISLVNNREFRN 195 (929)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhcccc--ccchHHHHHHHHHHHHHhhHHHHH
Confidence 4222 12222211 134445555555555444433 33331 1111 122233333433333222 22233
Q ss_pred HHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006010 283 KLVDNMFL---KGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVAS 326 (664)
Q Consensus 283 ~~~~~~~~---~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 326 (664)
++++.+.+ .+..|| |..+..+|....+.+.+.++++++.+.
T Consensus 196 ~vlr~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 196 KVLRLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 33443333 234555 345667777788888888888888874
No 454
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.97 E-value=99 Score=19.73 Aligned_cols=13 Identities=46% Similarity=0.593 Sum_probs=4.7
Q ss_pred HHHHHHHHHHhCC
Q 006010 245 EAVLLLDEMQVDG 257 (664)
Q Consensus 245 ~a~~~~~~~~~~~ 257 (664)
++..++++|.+.|
T Consensus 20 ~~~~~l~~l~~~g 32 (48)
T PF11848_consen 20 EVKPLLDRLQQAG 32 (48)
T ss_pred hHHHHHHHHHHcC
Confidence 3333333333333
No 455
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.38 E-value=1.1e+02 Score=28.21 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=25.8
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhcc--cCCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 006010 159 SVLNVIIQEGLYHRALEFYNHIVNAK--HMNILPNTLTFNLVIKTVCRLGLVDNAIQLF 215 (664)
Q Consensus 159 ~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 215 (664)
.++..|.+.|++++|.++|+.+...- ..-..+...+...+..++.+.|+.+....+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34444555555555555555543210 0112233344445555555555555555443
No 456
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=38.86 E-value=1.7e+02 Score=25.76 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010 259 FPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK 291 (664)
Q Consensus 259 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (664)
.|++.+|..++..+...|+.++|.++.+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355555555555555555555555555555443
No 457
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=38.47 E-value=2.7e+02 Score=26.82 Aligned_cols=122 Identities=19% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010 515 HGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS------NISHSIDLLNSMMDRGCDPDLVTCNIFLTA 588 (664)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 588 (664)
......+-++++..+++++ ...+. |.+......|.++-... +|.....+|+-+.. +.|+++.-..-.-+
T Consensus 264 r~lW~r~lI~eg~all~rA--~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVA 338 (415)
T COG4941 264 RSLWDRALIDEGLALLDRA--LASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVA 338 (415)
T ss_pred hhhhhHHHHHHHHHHHHHH--HHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHH
Q ss_pred hhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc-CCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 589 LKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK-FLSPQTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 589 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
..+..-.+.+..+.+-+.+. .+.--...+..-++.+.+.|+.+||...|.+.+
T Consensus 339 ---------------------la~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi 392 (415)
T COG4941 339 ---------------------LAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAI 392 (415)
T ss_pred ---------------------HHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHH
No 458
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.34 E-value=24 Score=33.53 Aligned_cols=90 Identities=17% Similarity=0.025 Sum_probs=48.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCChHHHHH
Q 006010 415 VGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNE-VCYSVLIHGLCEDGKLREARM 493 (664)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 493 (664)
.|.++.|++.|...+..+ ++....+.--..++.+.++...|++=+......+ ||. .-|-.-..+-...|++++|..
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHHH
Confidence 455666666666666554 4444455555555666666666666555555533 222 223323333444566666666
Q ss_pred HHHHHHhCCCCcCH
Q 006010 494 VWTQMLSRGCKPDV 507 (664)
Q Consensus 494 ~~~~~~~~~~~p~~ 507 (664)
.+....+.+..+..
T Consensus 204 dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 204 DLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHhccccHHH
Confidence 66666665544443
No 459
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.84 E-value=74 Score=29.98 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=31.5
Q ss_pred CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 006010 258 CFPTPV-TFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTY 300 (664)
Q Consensus 258 ~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 300 (664)
+.|+.. .|+..|....+.||+++|+.++++..+.|..--..+|
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 345554 4568888889999999999999999888865434443
No 460
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=37.14 E-value=7e+02 Score=28.69 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcC--ChhHHHHHHHHHHHc
Q 006010 263 VTFNVLINGLCKNG--ELGRAAKLVDNMFLK 291 (664)
Q Consensus 263 ~~~~~li~~~~~~g--~~~~a~~~~~~~~~~ 291 (664)
.-+..++.+|++.+ ++++|+..+.++.+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 34456677777777 777787777777654
No 461
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=37.13 E-value=76 Score=18.27 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHhCCCCcCHHhHH
Q 006010 488 LREARMVWTQMLSRGCKPDVVAYS 511 (664)
Q Consensus 488 ~~~A~~~~~~~~~~~~~p~~~~~~ 511 (664)
++.|..+|+..+.. .|+..+|.
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHHH
Confidence 45555555555542 35554444
No 462
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=36.99 E-value=2.5e+02 Score=26.84 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=15.2
Q ss_pred CCChHHHHHHHHHhcccchHHHHHHH
Q 006010 632 SPQTSTWERVVQELCRPKRIQAAINK 657 (664)
Q Consensus 632 ~~~~~~~~~l~~~~~~~g~~~~A~~~ 657 (664)
..|+..|..+..+|...|+.+.+.+-
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34566666666666666665555543
No 463
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.32 E-value=5.3e+02 Score=27.09 Aligned_cols=94 Identities=16% Similarity=0.115 Sum_probs=58.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHH-HcCCHHHHHHHHHHhhhcC-CCCCCCHhHHHHHHHHHHH
Q 006010 479 IHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLC-NAGSVEEALKLFNEMLCLE-PKSQPDVFTYNILLNALCK 556 (664)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 556 (664)
+..+.+.|-+..|.++-+-+......-|+.....+|+.|+ ++.+++--+++++...... -..-||...-.++...|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4556788889999988888887654446666777777764 6677888888777662111 1234554433445555555
Q ss_pred cCC---hhHHHHHHHHHHH
Q 006010 557 QSN---ISHSIDLLNSMMD 572 (664)
Q Consensus 557 ~g~---~~~A~~~~~~~~~ 572 (664)
... -+.|...+.++..
T Consensus 429 ~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALK 447 (665)
T ss_pred cCChhhHHHHHHHHHHHHH
Confidence 443 3445555555554
No 464
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=36.24 E-value=3.1e+02 Score=26.45 Aligned_cols=61 Identities=18% Similarity=0.083 Sum_probs=26.6
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccC
Q 006010 161 LNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVR 221 (664)
Q Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 221 (664)
++-|.+..+|..|...|.+-++.+-..-..+.+.|+.-..+-...|++..|+.-....+..
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~ 148 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL 148 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555555555555444221111122334444444444445555555444444433
No 465
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.05 E-value=5.1e+02 Score=26.83 Aligned_cols=36 Identities=8% Similarity=0.174 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 006010 261 TPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPN 296 (664)
Q Consensus 261 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~ 296 (664)
+...+..++......+....|+.+++++...|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 444444455444444444566666666666665444
No 466
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=35.81 E-value=1.8e+02 Score=21.56 Aligned_cols=14 Identities=50% Similarity=0.636 Sum_probs=5.7
Q ss_pred CChHHHHHHHHHHH
Q 006010 311 GNLDKAVSLLDRMV 324 (664)
Q Consensus 311 g~~~~a~~~~~~~~ 324 (664)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33444444444433
No 467
>PRK13342 recombination factor protein RarA; Reviewed
Probab=35.67 E-value=4.9e+02 Score=26.43 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=14.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHH
Q 006010 380 EGKAEDAMKLWKQMMEKGCKPNTVV 404 (664)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~ 404 (664)
..+.+.|+.++..|.+.|..|....
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~ 267 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIA 267 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 3556666666666666665554333
No 468
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=35.30 E-value=3.1e+02 Score=24.06 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=27.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC--------------CCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006010 373 LISGLFKEGKAEDAMKLWKQMMEKGC--------------KPNTVVYSALIDGLCRVGKPDEAEEILF 426 (664)
Q Consensus 373 l~~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~~~~~~a~~~~~ 426 (664)
++..|.+..++.+..++++.|.+..+ .+.-...+.....+.+.|..|.|..+++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 44455556666666666666654321 1222334444445555555555555554
No 469
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=35.13 E-value=5e+02 Score=26.44 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=72.9
Q ss_pred HHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCC
Q 006010 90 IQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGL 169 (664)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (664)
+.-....|+...|.+-+...++..+..+ .............|.++.+...+...-.. ......+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p-~~i~l~~~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDP-VLIQLRSVIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCc-hhhHHHHHHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhh
Confidence 4455566777777655544444332211 12222333456778888888777665322 23344566777888888888
Q ss_pred HhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC
Q 006010 170 YHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRN 222 (664)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 222 (664)
+++|...-+-|+. ..++ +...........-..|-++++...++++...+
T Consensus 373 ~~~a~s~a~~~l~---~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLS---NEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhc---cccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 8888888888776 3332 22222233333345567777777777766554
No 470
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.00 E-value=1.1e+02 Score=25.36 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=38.3
Q ss_pred CCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006010 77 GSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHL 133 (664)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (664)
.+.++++. -..++..+.+.+..-.|..+|+.+.+.++..+..+.+..+..+...|-
T Consensus 15 ~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 15 AGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred cCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 33444443 445677777777778888888888887777766666666666666653
No 471
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.85 E-value=3.8e+02 Score=24.90 Aligned_cols=185 Identities=14% Similarity=0.142 Sum_probs=92.9
Q ss_pred CHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhccc-------CCCCCCHHHHHHHHHHHHhcC
Q 006010 169 LYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPV-------RNCEPDIYTYCTLMDGLCKEN 241 (664)
Q Consensus 169 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g 241 (664)
++++|+.-|++.++..+..-...-.....++....+.|++++..+.+.+++. ++ -+..+.|+++.......
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN--ySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN--YSEKSINSILDYISTSK 119 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHhhhh
Confidence 4455555555554421111111112333345555555555555555555432 11 12334555555444444
Q ss_pred ChhHHHHHHH-------HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCC------CCHHHHHHH
Q 006010 242 RLDEAVLLLD-------EMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK-----GCL------PNEVTYNTL 303 (664)
Q Consensus 242 ~~~~a~~~~~-------~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----g~~------p~~~~~~~l 303 (664)
+.+.....++ ......+. ..|-..|...|...|++.+..++++++... |-. .-...|..-
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLW--FKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLW--FKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceee--eeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 4433333333 22221110 112245666777777777777777776543 100 013467777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC-CCCCChhhHHHHHH----HHHhcCChhHHHHHHHH
Q 006010 304 IHGLCLKGNLDKAVSLLDRMVAS-KCMPNEVTYGTIIN----GLVKLGRAVDGARVLMS 357 (664)
Q Consensus 304 ~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~ 357 (664)
|..|....+-.+-..+|++.+.. .-.|.+.....+-. +..+.|++++|..-|-+
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHH
Confidence 88888888888888888877653 22445544443322 24456778777644433
No 472
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=34.66 E-value=3.6e+02 Score=24.60 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=28.9
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHH
Q 006010 189 LPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGL 237 (664)
Q Consensus 189 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (664)
.|.......++..+ ..+++++|.+++.++-+.|+.|. ...+++.+.+
T Consensus 236 ~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~-Dii~~~FRv~ 282 (333)
T KOG0991|consen 236 EPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPE-DIITTLFRVV 282 (333)
T ss_pred CCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 35666666666544 44678888888888877776653 2344444443
No 473
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=34.26 E-value=6.8e+02 Score=27.69 Aligned_cols=201 Identities=9% Similarity=-0.022 Sum_probs=104.5
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH---HcCCHhHHHHHHHHHHhcccCCCCcC
Q 006010 115 VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVII---QEGLYHRALEFYNHIVNAKHMNILPN 191 (664)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~ 191 (664)
..+......|+..+.+.|++++...--..|.+- .+.++..|...+.-.. ..+...++..+|++.+. .-. +
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~--~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~---dy~--~ 182 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEI--APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG---DYN--S 182 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHh--cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc---ccc--c
Confidence 335556778888888888887765555555443 3455566655555333 34677788888888876 222 2
Q ss_pred HHHHHHHHHHHH-------hcCChhHHHHHHhhcccC-CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006010 192 TLTFNLVIKTVC-------RLGLVDNAIQLFREMPVR-NCEP-----DIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGC 258 (664)
Q Consensus 192 ~~~~~~ll~~~~-------~~g~~~~A~~~~~~~~~~-~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 258 (664)
+..|.-.+..+. ..++++..+.+|.+.+.. |... ....|.-+-..|..+-..++...+|..-...+.
T Consensus 183 v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~ 262 (881)
T KOG0128|consen 183 VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPL 262 (881)
T ss_pred chHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 333333333332 346677788888776543 2111 122333333444445555667777776665542
Q ss_pred CCCHHHHHHHHHHHH-------hcCChhHHHHH-------HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006010 259 FPTPVTFNVLINGLC-------KNGELGRAAKL-------VDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMV 324 (664)
Q Consensus 259 ~~~~~~~~~li~~~~-------~~g~~~~a~~~-------~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 324 (664)
..+.. +.-..--. ...+.+.+.+- |++.... ..+-...|..++..+-+.|+.-.....++++.
T Consensus 263 D~~~~--~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~ 339 (881)
T KOG0128|consen 263 DEDTR--GWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAV 339 (881)
T ss_pred hhhhh--HHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 22211 11111111 11222333222 2222221 12223456667777777887777766676665
Q ss_pred H
Q 006010 325 A 325 (664)
Q Consensus 325 ~ 325 (664)
.
T Consensus 340 ~ 340 (881)
T KOG0128|consen 340 A 340 (881)
T ss_pred H
Confidence 4
No 474
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.94 E-value=2.8e+02 Score=29.48 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=60.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChh------HHHHHHHHHHHcCCCCCHHHHHHH
Q 006010 232 TLMDGLCKENRLDEAVLLLDEMQVDG--CFPTPVTFNVLINGLCKNGELG------RAAKLVDNMFLKGCLPNEVTYNTL 303 (664)
Q Consensus 232 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~------~a~~~~~~~~~~g~~p~~~~~~~l 303 (664)
+|+.+|...|++..+.++++.....+ -+.=...||..|+-..+.|.++ .|.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999887642 2223456788888888888764 4455555544 34477888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 006010 304 IHGLCLKGNLDKAVSLLDRMVA 325 (664)
Q Consensus 304 ~~~~~~~g~~~~a~~~~~~~~~ 325 (664)
+.+....-+.....-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7766553333334444444443
No 475
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.19 E-value=3.7e+02 Score=29.78 Aligned_cols=129 Identities=15% Similarity=0.141 Sum_probs=73.0
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCC
Q 006010 128 YGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGL 207 (664)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 207 (664)
...+|+.+.|++...++ .+...|..|+.....+|+.+-|...|++... |+.+--.|.-.|+
T Consensus 653 aLe~gnle~ale~akkl-------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn------------fekLsfLYliTgn 713 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL-------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN------------FEKLSFLYLITGN 713 (1202)
T ss_pred ehhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh------------hhheeEEEEEeCC
Confidence 35667777777766554 3456777787777778887777777777654 3344445556677
Q ss_pred hhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006010 208 VDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDN 287 (664)
Q Consensus 208 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 287 (664)
.++-.++..-...++ |..+ ......-.|+.++-.++++..-. -+..|.. ....|.-++|.++.++
T Consensus 714 ~eKL~Km~~iae~r~---D~~~---~~qnalYl~dv~ervkIl~n~g~-----~~laylt----a~~~G~~~~ae~l~ee 778 (1202)
T KOG0292|consen 714 LEKLSKMMKIAEIRN---DATG---QFQNALYLGDVKERVKILENGGQ-----LPLAYLT----AAAHGLEDQAEKLGEE 778 (1202)
T ss_pred HHHHHHHHHHHHhhh---hhHH---HHHHHHHhccHHHHHHHHHhcCc-----ccHHHHH----HhhcCcHHHHHHHHHh
Confidence 776666655544332 2221 11112234666666666554332 1112211 1235666777777777
Q ss_pred HHH
Q 006010 288 MFL 290 (664)
Q Consensus 288 ~~~ 290 (664)
...
T Consensus 779 ~~~ 781 (1202)
T KOG0292|consen 779 LEK 781 (1202)
T ss_pred hcc
Confidence 655
No 476
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=32.85 E-value=5e+02 Score=30.33 Aligned_cols=157 Identities=16% Similarity=0.137 Sum_probs=92.0
Q ss_pred HHHhcCChhHHHH------HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH-------HHCCCCCCHHHHHH
Q 006010 411 GLCRVGKPDEAEE------ILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDM-------AKNNCVYNEVCYSV 477 (664)
Q Consensus 411 ~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~ 477 (664)
.....|.+.++.+ ++......-.+.....|..+...+.+.|+.++|+..-... ...+.+.+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444566666666 5543332222455677888888899999999988765443 22222334445666
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhC-----C-CCcCH-HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCC-----CCCCHh
Q 006010 478 LIHGLCEDGKLREARMVWTQMLSR-----G-CKPDV-VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPK-----SQPDVF 545 (664)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~ 545 (664)
+.......++...|...+...... | ..|.. .+++.+-..+...++++.|.++.+.+.+.... .-++..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 665556666777777777665532 2 23443 44455555556668899999999888643221 122344
Q ss_pred HHHHHHHHHHHcCChhHHHHHH
Q 006010 546 TYNILLNALCKQSNISHSIDLL 567 (664)
Q Consensus 546 ~~~~l~~~~~~~g~~~~A~~~~ 567 (664)
++..+...+...+++..|....
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH
Confidence 5555555555555555544433
No 477
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.80 E-value=2.5e+02 Score=23.38 Aligned_cols=13 Identities=31% Similarity=0.271 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHHC
Q 006010 419 DEAEEILFEMINN 431 (664)
Q Consensus 419 ~~a~~~~~~~~~~ 431 (664)
-.|.++++.+.+.
T Consensus 37 ~sAeei~~~l~~~ 49 (145)
T COG0735 37 LSAEELYEELREE 49 (145)
T ss_pred CCHHHHHHHHHHh
Confidence 3333344333333
No 478
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=32.71 E-value=4.4e+02 Score=25.08 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=7.3
Q ss_pred HHHHHHHHHHcCChh
Q 006010 547 YNILLNALCKQSNIS 561 (664)
Q Consensus 547 ~~~l~~~~~~~g~~~ 561 (664)
|.-|+.+++.+|+.+
T Consensus 324 yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 324 YAPLLAAFCSQGQSE 338 (412)
T ss_pred hhHHHHHHhcCChHH
Confidence 444555555555443
No 479
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=32.60 E-value=6e+02 Score=29.72 Aligned_cols=93 Identities=12% Similarity=-0.045 Sum_probs=48.6
Q ss_pred HHHHHHhCCCcchHHH------HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc------CCCCCCHHH
Q 006010 89 LIQHYANSGDFKSLEM------VLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE------FHCKRTVKS 156 (664)
Q Consensus 89 l~~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~ 156 (664)
..+.....|.+.++.. ++.+.-..-.+.....|..+...+.+.|+.++|+..-.+..-. ...+.+...
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 3445555666666665 4443332222344556777888888888888888765443211 011222334
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHH
Q 006010 157 FNSVLNVIIQEGLYHRALEFYNHIV 181 (664)
Q Consensus 157 ~~~l~~~~~~~~~~~~A~~~~~~~~ 181 (664)
|..+.......++...|...+....
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~ 1042 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRAL 1042 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHH
Confidence 4444444444445555555554443
No 480
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=32.57 E-value=2.4e+02 Score=21.96 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=42.8
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChh
Q 006010 130 KAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVD 209 (664)
Q Consensus 130 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 209 (664)
-....++|..+.+++... +. -...+-.+-+..+...|+|++|+.. -. ....||...|..+ +-.+.|--+
T Consensus 18 G~HcH~EA~tIa~wL~~~-~~-~~E~v~lIr~~sLmNrG~Yq~ALl~--~~-----~~~~pdL~p~~AL--~a~klGL~~ 86 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQE-GE-MEEVVALIRLSSLMNRGDYQEALLL--PQ-----CHCYPDLEPWAAL--CAWKLGLAS 86 (116)
T ss_dssp TTT-HHHHHHHHHHHHHT-TT-THHHHHHHHHHHHHHTT-HHHHHHH--HT-----TS--GGGHHHHHH--HHHHCT-HH
T ss_pred hhHHHHHHHHHHHHHHhC-Cc-HHHHHHHHHHHHHHhhHHHHHHHHh--cc-----cCCCccHHHHHHH--HHHhhccHH
Confidence 345677787777776432 11 1122233345566677888887221 11 2344666666554 334677777
Q ss_pred HHHHHHhhcccCC
Q 006010 210 NAIQLFREMPVRN 222 (664)
Q Consensus 210 ~A~~~~~~~~~~~ 222 (664)
++...+..+...|
T Consensus 87 ~~e~~l~rla~~g 99 (116)
T PF09477_consen 87 ALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHHHCT-S
T ss_pred HHHHHHHHHHhCC
Confidence 7777777776665
No 481
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=32.12 E-value=4.5e+02 Score=25.01 Aligned_cols=69 Identities=19% Similarity=0.342 Sum_probs=34.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChhHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006010 379 KEGKAEDAMKLWKQMMEKGCKPNTV----VYSALIDGLCRVGKPDEAEEI-LFEMINNGCAANAFTYSSLMKGFFESGKG 453 (664)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 453 (664)
+...+++.....++-.+..--|+.. .|..+|++ ..|.+-.++ -+.+++ ....|..|+.+++..|+.
T Consensus 267 ~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsa----veWnKkeelva~qalr-----hlK~yaPLL~af~s~g~s 337 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSA----VEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQS 337 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHH----HhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChH
Confidence 3344555555554433333344554 45555544 333322222 222222 245677888888888877
Q ss_pred HHH
Q 006010 454 HKA 456 (664)
Q Consensus 454 ~~a 456 (664)
+-.
T Consensus 338 EL~ 340 (412)
T KOG2297|consen 338 ELE 340 (412)
T ss_pred HHH
Confidence 654
No 482
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.54 E-value=4.5e+02 Score=24.76 Aligned_cols=159 Identities=15% Similarity=0.034 Sum_probs=71.1
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHH-------HHHHHHHHHHhcCChhHHHHHHhhccc----CCCCCCHH
Q 006010 160 VLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTL-------TFNLVIKTVCRLGLVDNAIQLFREMPV----RNCEPDIY 228 (664)
Q Consensus 160 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ 228 (664)
+.+..++.+++++|...|.+++. .|+..+.. +...+...|...|+...-.+......+ ..-+..+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~---kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~K 85 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILG---KGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITK 85 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhc---CCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHH
Confidence 44455666677777777777766 44433332 334455566666665544444332211 11011222
Q ss_pred HHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHH----HHcCCCCCHH
Q 006010 229 TYCTLMDGLCK-ENRLDEAVLLLDEMQVDGCFPT-----PVTFNVLINGLCKNGELGRAAKLVDNM----FLKGCLPNEV 298 (664)
Q Consensus 229 ~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~g~~p~~~ 298 (664)
...+|+.-+-. ...++..+++.....+....-. ...-..++..+.+.|.+.+|+.+...+ .+..-+|+..
T Consensus 86 iirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 86 IIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 33334433322 2334444444443332211001 111234566777778777777665543 2333344443
Q ss_pred HHHHH-HHHHHhcCChHHHHHHHH
Q 006010 299 TYNTL-IHGLCLKGNLDKAVSLLD 321 (664)
Q Consensus 299 ~~~~l-~~~~~~~g~~~~a~~~~~ 321 (664)
+...+ -..|...+++.++..-+.
T Consensus 166 ~vhllESKvyh~irnv~KskaSLT 189 (421)
T COG5159 166 TVHLLESKVYHEIRNVSKSKASLT 189 (421)
T ss_pred ehhhhhHHHHHHHHhhhhhhhHHH
Confidence 32222 123444444444444433
No 483
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=31.43 E-value=4.9e+02 Score=25.21 Aligned_cols=95 Identities=17% Similarity=0.255 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCC-Cc--CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHH
Q 006010 474 CYSVLIHGLCEDGKLREARMVWTQMLSRGC-KP--DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNIL 550 (664)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 550 (664)
.|..=.+-|.+..++..|...|.+-+.... .| +.+.|+.-..+-...|++..|+.-...++..+|. ....|-.=
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~---h~Ka~~R~ 159 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT---HLKAYIRG 159 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc---hhhhhhhh
Confidence 455556666777777777777776665421 22 2355666666666667777777777776443222 12222222
Q ss_pred HHHHHHcCChhHHHHHHHHHH
Q 006010 551 LNALCKQSNISHSIDLLNSMM 571 (664)
Q Consensus 551 ~~~~~~~g~~~~A~~~~~~~~ 571 (664)
..++....++++|..+.++..
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhh
Confidence 334455556666666655553
No 484
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=30.97 E-value=3.7e+02 Score=23.64 Aligned_cols=108 Identities=14% Similarity=0.095 Sum_probs=53.5
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHH-HHHHcC--ChhHHHHHHHHHHHCCCCCCHH----HHHHHH
Q 006010 514 IHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLN-ALCKQS--NISHSIDLLNSMMDRGCDPDLV----TCNIFL 586 (664)
Q Consensus 514 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g--~~~~A~~~~~~~~~~~~~p~~~----~~~~ll 586 (664)
+-...+.|++++|..-++++-..-...+.-...|..+.. +++..+ .+-+|..++.-..+. ..|.+. .....+
T Consensus 36 aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~-~~ps~~EL~V~~~~Yi 114 (204)
T COG2178 36 AIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG-RLPSPEELGVPPIAYI 114 (204)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCCHHHcCCCHHHHH
Confidence 334456677777777777663211111112223444443 444444 355666666555543 333332 111222
Q ss_pred HhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 587 TALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
.++.. ...=+...+....+.|+++.|...++-|.+.
T Consensus 115 lGl~D-------~vGELrR~~le~l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 115 LGLAD-------AVGELRRHVLELLRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HHHHH-------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 22111 1111223344577899999999988888753
No 485
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=30.93 E-value=2.8e+02 Score=22.16 Aligned_cols=92 Identities=17% Similarity=0.115 Sum_probs=49.7
Q ss_pred HcCCHHHHHHHHHHhhhcCCCCCC---------CHhHHHHHHHHHHHcCChhHHHHHHHHHHH----CC-CCCCHH-HHH
Q 006010 519 NAGSVEEALKLFNEMLCLEPKSQP---------DVFTYNILLNALCKQSNISHSIDLLNSMMD----RG-CDPDLV-TCN 583 (664)
Q Consensus 519 ~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~p~~~-~~~ 583 (664)
..|.+++|..-+.+++.....++| |...+..|..++...|++++++.-.+..+. +| +.-|.- .|.
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 456677776666666543333333 233455666778888888887765555542 11 333322 222
Q ss_pred HHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHH
Q 006010 584 IFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVML 627 (664)
Q Consensus 584 ~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (664)
..+- +-+.++-..|+.++|.+.|+..-
T Consensus 101 aaVf-----------------sra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 101 AAVF-----------------SRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHH-----------------HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHH-----------------HHHHHHHhcCChHHHHHHHHHHH
Confidence 2221 12344778899999999888643
No 486
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.73 E-value=3.2e+02 Score=25.98 Aligned_cols=42 Identities=14% Similarity=0.399 Sum_probs=23.3
Q ss_pred HHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhh
Q 006010 493 MVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEML 534 (664)
Q Consensus 493 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (664)
++|+.+...++.|.-.++..+.-.+.+.=.+.+.+.+++.++
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 455555555566655555544444555555556666666553
No 487
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.31 E-value=5.1e+02 Score=24.75 Aligned_cols=72 Identities=17% Similarity=0.358 Sum_probs=40.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHH----------cCCHHHH
Q 006010 457 VEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCN----------AGSVEEA 526 (664)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~A 526 (664)
.++|+.+.+.++.|...++.-+.-.+.+.=.+.+.+.+|+.+.. |..-|..++..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 34555666666666666665555555566666666666666654 22224444444432 4666666
Q ss_pred HHHHHHh
Q 006010 527 LKLFNEM 533 (664)
Q Consensus 527 ~~~~~~~ 533 (664)
.++++.-
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 6666543
No 488
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=29.14 E-value=3.9e+02 Score=23.32 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=11.3
Q ss_pred HHHHhcCChhHHHHHHhhccc
Q 006010 200 KTVCRLGLVDNAIQLFREMPV 220 (664)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~~~~ 220 (664)
..|.+.|.+++|.++++....
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345555555555555555544
No 489
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.80 E-value=2.8e+02 Score=21.61 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010 440 YSSLMKGFFESGKGHKAVEIWKDMAK 465 (664)
Q Consensus 440 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 465 (664)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55566666666666666666666554
No 490
>PRK12798 chemotaxis protein; Reviewed
Probab=28.65 E-value=6.2e+02 Score=25.48 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=78.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChH
Q 006010 240 ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGL-CKNGELGRAAKLVDNMFLKGCLPNE----VTYNTLIHGLCLKGNLD 314 (664)
Q Consensus 240 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~ 314 (664)
.|+..++.+.+..+.....++....|-.|+.+- ....+...|+++|+...-. -|-. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 677777777777776665666666666666543 3345677777777776543 2222 22333334456677777
Q ss_pred HHHHHHHHHHHCCCCCChhh---HHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 006010 315 KAVSLLDRMVASKCMPNEVT---YGTIINGLVKLGRAVDGARVLMSMEE-RKFHVNEYIYSTLISGLFKEGKAEDAMKLW 390 (664)
Q Consensus 315 ~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 390 (664)
++..+-.+.... +..+++. +..+...+.+.++-..-.. +..+.. .....-...|..+...-.-.|+.+-|...-
T Consensus 203 rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 203 KFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVEILSFMDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccHHH-HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 766555554443 1112221 1222223333332211111 222222 122223456666666666777777776666
Q ss_pred HHHHHc
Q 006010 391 KQMMEK 396 (664)
Q Consensus 391 ~~~~~~ 396 (664)
++....
T Consensus 281 ~~A~~L 286 (421)
T PRK12798 281 ERALKL 286 (421)
T ss_pred HHHHHh
Confidence 666554
No 491
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.64 E-value=1.8e+02 Score=22.79 Aligned_cols=48 Identities=15% Similarity=0.195 Sum_probs=33.8
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006010 88 SLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVE 135 (664)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 135 (664)
.++..+...+..-.|.++++.+.+.++..+..+....+..+.+.|-..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 355666666777788888888887776667777777777777766443
No 492
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=28.56 E-value=3.5e+02 Score=22.54 Aligned_cols=80 Identities=9% Similarity=0.247 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCChhhHHHH
Q 006010 265 FNVLINGLCKNGELGRAAKLVDNMFLKGC-----LPNEVTYNTLIHGLCLKGN-LDKAVSLLDRMVASKCMPNEVTYGTI 338 (664)
Q Consensus 265 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~-----~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l 338 (664)
.|.++.-....+++...+.+++.+..... ..+...|..++.+.....- ---+..+|.-+.+.+.+.++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34455544555555555555554421100 1133345555555544333 23344555555555555555555555
Q ss_pred HHHHHh
Q 006010 339 INGLVK 344 (664)
Q Consensus 339 l~~~~~ 344 (664)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555443
No 493
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.39 E-value=88 Score=21.67 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=22.5
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHH
Q 006010 190 PNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLC 238 (664)
Q Consensus 190 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (664)
|....++.++...++..-.++++..+.+....| ..+..+|.--++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344445555555555555555555555555554 234444444444333
No 494
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.31 E-value=2.9e+02 Score=21.55 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006010 120 SFIFIFKAYGKAHLVEEAIRLFHTMVD 146 (664)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 146 (664)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 356667777777777777777776643
No 495
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=28.30 E-value=2.5e+02 Score=20.80 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=26.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010 248 LLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMF 289 (664)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 289 (664)
++|+-....|+..|+..|..+++...-+=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566666666666666666666666555555555556665554
No 496
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=28.17 E-value=2e+02 Score=20.40 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHc
Q 006010 133 LVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQE 167 (664)
Q Consensus 133 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (664)
+.+-|..++..+.. ..++++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~--dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRD--DEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcc--hhhcChHHHHHHHHHHHHc
Confidence 45667777776633 3567778888887777654
No 497
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=27.19 E-value=5.2e+02 Score=24.15 Aligned_cols=88 Identities=15% Similarity=0.056 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHH----hCCCCcCHHHHHHHHHHHHhcCC--------HHHHHHHHHHhhhcCCCCCCH
Q 006010 87 YSLIQHYANSGDFKSLEMVLYRMR----REKRVVLEKSFIFIFKAYGKAHL--------VEEAIRLFHTMVDEFHCKRTV 154 (664)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~ 154 (664)
..-...+.++|+...|..+...++ +.+.+.+......++..+...+. .+.|+++- .......-++
T Consensus 14 ~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS---~~~~~~~Gdp 90 (260)
T PF04190_consen 14 YSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS---KFGSYKFGDP 90 (260)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH---HTSS-TT--H
T ss_pred HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH---ccCCCCCCCH
Confidence 333445566666666555433333 23444455444444444433221 12222222 1111122345
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHH
Q 006010 155 KSFNSVLNVIIQEGLYHRALEFY 177 (664)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~A~~~~ 177 (664)
..+..++..+.+.|++.+|...|
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHH
Confidence 56666666666666666666554
No 498
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.71 E-value=6.7e+02 Score=25.27 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCC------CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010 120 SFIFIFKAYGKAHLVEEAIRLFHTMVDEFH------CKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 182 (664)
+...+++.++-.|++..|++.++.+--... ..-.+.++..++-+|...+++.+|.+.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678888889999999999887621100 112345677788888888999999999888754
No 499
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=26.65 E-value=1.4e+02 Score=20.65 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=31.6
Q ss_pred CChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 006010 81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKA 131 (664)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (664)
|..+.++.++...++..-.+.+...+.++.+.|. .+...|..-++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 3445666677777776667777777777777663 4566666666666553
No 500
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.51 E-value=1.1e+03 Score=27.57 Aligned_cols=58 Identities=16% Similarity=0.136 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHh-HHHHHHHHHHHcCChhHHHHH
Q 006010 509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVF-TYNILLNALCKQSNISHSIDL 566 (664)
Q Consensus 509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~ 566 (664)
-|...++.+...+-.+.+.++-..+++.-+.-.|... +++.+.+-....|.+.+|...
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a 1043 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKA 1043 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHH
Confidence 4566677777778888877777777543333333333 455555656666666555443
Done!