Query 006010
Match_columns 664
No_of_seqs 771 out of 3640
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 13:33:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.8E-41 3E-45 357.1 44.5 488 81-586 82-590 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.2E-41 2.8E-45 357.4 41.5 506 93-662 63-577 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-27 7.6E-32 238.5 49.0 382 125-558 6-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-27 7.4E-32 238.6 48.7 372 201-586 8-380 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.7E-28 5.7E-33 249.8 25.0 202 213-414 11-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 2.2E-28 7.4E-33 249.0 23.6 185 195-379 29-222 (501)
7 2gw1_A Mitochondrial precursor 100.0 1.3E-24 4.5E-29 227.4 41.5 277 297-585 186-488 (514)
8 2gw1_A Mitochondrial precursor 100.0 1.1E-24 3.9E-29 227.8 40.6 450 155-641 7-489 (514)
9 3fp2_A TPR repeat-containing p 99.9 2.2E-23 7.6E-28 219.3 37.0 259 311-580 216-496 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1.8E-22 6.3E-27 207.1 41.6 397 212-655 12-445 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 2.6E-22 9E-27 206.0 40.4 329 137-501 11-358 (450)
12 3fp2_A TPR repeat-containing p 99.9 2E-22 6.9E-27 212.0 38.1 434 82-539 24-494 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 9.1E-19 3.1E-23 173.6 40.8 324 226-586 2-346 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 8.1E-19 2.8E-23 173.9 39.9 332 191-555 2-351 (359)
15 2xm6_A Protein corresponding t 99.9 1.4E-17 4.7E-22 172.2 49.1 351 191-573 38-432 (490)
16 2xm6_A Protein corresponding t 99.9 2.9E-17 9.9E-22 169.8 50.8 365 135-536 24-432 (490)
17 1xi4_A Clathrin heavy chain; a 99.9 2.5E-16 8.4E-21 169.6 55.9 419 82-568 984-1440(1630)
18 1xi4_A Clathrin heavy chain; a 99.9 3.7E-16 1.3E-20 168.3 55.4 397 59-521 997-1415(1630)
19 2ooe_A Cleavage stimulation fa 99.9 1.9E-17 6.5E-22 173.0 45.2 218 350-572 256-491 (530)
20 2ooe_A Cleavage stimulation fa 99.9 3E-17 1E-21 171.5 46.1 416 106-535 2-491 (530)
21 3hym_B Cell division cycle pro 99.8 2E-18 6.7E-23 169.0 31.8 295 329-652 19-322 (330)
22 3hym_B Cell division cycle pro 99.8 2.5E-18 8.6E-23 168.2 32.2 274 297-580 22-304 (330)
23 1fch_A Peroxisomal targeting s 99.8 5.6E-18 1.9E-22 168.6 26.0 309 237-571 35-357 (368)
24 1fch_A Peroxisomal targeting s 99.8 5.2E-18 1.8E-22 168.8 25.7 304 168-496 39-354 (368)
25 4g1t_A Interferon-induced prot 99.8 1.1E-16 3.7E-21 165.2 35.2 381 226-629 50-459 (472)
26 4eqf_A PEX5-related protein; a 99.8 5.8E-18 2E-22 168.2 24.6 264 370-662 68-354 (365)
27 4eqf_A PEX5-related protein; a 99.8 2.4E-17 8.2E-22 163.7 24.5 275 264-569 67-352 (365)
28 1b89_A Protein (clathrin heavy 99.8 1.4E-16 4.6E-21 154.1 27.8 240 95-380 15-254 (449)
29 3cv0_A Peroxisome targeting si 99.8 4.3E-17 1.5E-21 159.1 24.9 260 371-662 25-313 (327)
30 4g1t_A Interferon-induced prot 99.8 1.3E-15 4.4E-20 157.1 36.2 364 191-573 50-459 (472)
31 1b89_A Protein (clathrin heavy 99.8 2.4E-16 8.2E-21 152.4 27.7 283 204-530 15-305 (449)
32 3cv0_A Peroxisome targeting si 99.8 2E-16 6.9E-21 154.3 26.0 233 82-325 20-268 (327)
33 3mkr_A Coatomer subunit epsilo 99.7 8.9E-16 3E-20 145.8 28.2 255 90-362 6-265 (291)
34 3mkr_A Coatomer subunit epsilo 99.7 1.9E-15 6.5E-20 143.6 29.0 149 163-326 8-159 (291)
35 3e4b_A ALGK; tetratricopeptide 99.7 4.5E-15 1.6E-19 150.7 27.7 313 234-574 10-352 (452)
36 3spa_A Mtrpol, DNA-directed RN 99.7 5.9E-17 2E-21 169.0 11.9 151 191-346 126-286 (1134)
37 2pl2_A Hypothetical conserved 99.7 3.9E-15 1.3E-19 135.1 21.8 198 434-660 2-210 (217)
38 4e6h_A MRNA 3'-END-processing 99.7 4.8E-12 1.6E-16 132.6 46.7 233 352-589 329-584 (679)
39 3spa_A Mtrpol, DNA-directed RN 99.7 7.2E-17 2.5E-21 168.4 9.9 119 226-344 126-248 (1134)
40 3uq3_A Heat shock protein STI1 99.7 2.1E-14 7.2E-19 134.6 25.5 222 335-572 8-235 (258)
41 3e4b_A ALGK; tetratricopeptide 99.7 1.4E-14 4.7E-19 147.1 25.9 346 160-574 9-388 (452)
42 2pl2_A Hypothetical conserved 99.7 1E-14 3.5E-19 132.3 21.3 198 366-571 4-212 (217)
43 3uq3_A Heat shock protein STI1 99.7 3.1E-14 1.1E-18 133.4 25.4 225 299-537 7-237 (258)
44 4e6h_A MRNA 3'-END-processing 99.6 1.1E-11 3.6E-16 130.0 42.6 457 63-554 48-584 (679)
45 3u4t_A TPR repeat-containing p 99.6 2.3E-13 7.8E-18 128.7 26.7 239 82-327 2-251 (272)
46 3u4t_A TPR repeat-containing p 99.6 2.2E-13 7.5E-18 128.8 26.4 258 369-648 5-268 (272)
47 2h6f_A Protein farnesyltransfe 99.6 4.3E-13 1.5E-17 131.6 28.1 227 300-533 100-344 (382)
48 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.5E-14 1.5E-18 133.8 20.5 250 379-658 17-269 (275)
49 2h6f_A Protein farnesyltransfe 99.6 3.5E-13 1.2E-17 132.3 27.0 233 83-326 97-348 (382)
50 1ouv_A Conserved hypothetical 99.6 2.7E-12 9.2E-17 121.3 32.3 219 120-360 8-250 (273)
51 2ho1_A Type 4 fimbrial biogene 99.6 6.4E-13 2.2E-17 123.9 26.7 210 367-584 37-247 (252)
52 2ho1_A Type 4 fimbrial biogene 99.6 6.9E-13 2.4E-17 123.7 26.2 206 402-637 37-244 (252)
53 1ouv_A Conserved hypothetical 99.6 7.1E-12 2.4E-16 118.3 33.2 222 227-466 6-251 (273)
54 2q7f_A YRRB protein; TPR, prot 99.6 2.8E-13 9.6E-18 125.6 22.0 198 403-629 24-222 (243)
55 2vq2_A PILW, putative fimbrial 99.6 1.1E-12 3.7E-17 119.9 25.5 213 366-585 7-221 (225)
56 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.9E-13 6.4E-18 129.5 20.8 246 310-567 18-269 (275)
57 2vq2_A PILW, putative fimbrial 99.6 1.5E-12 5.1E-17 119.0 25.9 201 401-629 7-211 (225)
58 2q7f_A YRRB protein; TPR, prot 99.6 3E-13 1E-17 125.3 21.5 208 366-582 22-229 (243)
59 4a1s_A PINS, partner of inscut 99.5 2E-13 6.9E-18 137.8 17.4 95 335-430 51-154 (411)
60 4abn_A Tetratricopeptide repea 99.5 9.9E-13 3.4E-17 134.4 21.9 212 418-660 84-317 (474)
61 3vtx_A MAMA; tetratricopeptide 99.5 3.8E-12 1.3E-16 112.1 22.6 172 401-580 4-175 (184)
62 3sf4_A G-protein-signaling mod 99.5 6.1E-13 2.1E-17 133.9 19.1 245 81-325 7-295 (406)
63 4a1s_A PINS, partner of inscut 99.5 1.3E-12 4.5E-17 131.7 21.5 62 264-325 225-291 (411)
64 3sf4_A G-protein-signaling mod 99.5 7.1E-13 2.4E-17 133.4 19.1 284 330-629 7-336 (406)
65 3ro2_A PINS homolog, G-protein 99.5 5.6E-13 1.9E-17 130.3 16.9 271 374-662 12-330 (338)
66 3ulq_A Response regulator aspa 99.5 4.1E-12 1.4E-16 126.7 22.1 234 408-662 109-366 (383)
67 2ond_A Cleavage stimulation fa 99.5 2.2E-11 7.6E-16 117.0 26.5 218 100-326 33-270 (308)
68 3nf1_A KLC 1, kinesin light ch 99.5 1.4E-12 4.9E-17 125.8 17.2 244 404-662 29-305 (311)
69 2ond_A Cleavage stimulation fa 99.4 1.1E-10 3.9E-15 112.0 29.8 165 404-572 101-269 (308)
70 3ulq_A Response regulator aspa 99.4 1.5E-11 5.2E-16 122.5 24.3 230 338-572 109-367 (383)
71 3vtx_A MAMA; tetratricopeptide 99.4 2E-11 6.8E-16 107.4 22.1 166 366-535 4-169 (184)
72 3ro2_A PINS homolog, G-protein 99.4 3.1E-12 1.1E-16 124.9 18.6 241 84-324 6-290 (338)
73 4abn_A Tetratricopeptide repea 99.4 6.9E-12 2.3E-16 128.1 20.8 215 348-570 84-318 (474)
74 3nf1_A KLC 1, kinesin light ch 99.4 1E-12 3.5E-17 126.8 12.1 175 81-255 25-223 (311)
75 3q15_A PSP28, response regulat 99.4 1.4E-10 4.7E-15 115.2 25.5 233 372-628 106-364 (378)
76 3q15_A PSP28, response regulat 99.4 9E-11 3.1E-15 116.6 23.1 234 407-662 106-363 (378)
77 1hz4_A MALT regulatory protein 99.3 3.2E-10 1.1E-14 112.4 25.8 277 336-629 18-322 (373)
78 1hz4_A MALT regulatory protein 99.3 5.5E-10 1.9E-14 110.8 27.5 238 87-324 18-280 (373)
79 4gyw_A UDP-N-acetylglucosamine 99.3 1E-10 3.5E-15 124.1 20.9 165 402-572 9-173 (723)
80 4gyw_A UDP-N-acetylglucosamine 99.3 1.5E-10 5E-15 123.0 21.6 165 366-535 8-173 (723)
81 3as5_A MAMA; tetratricopeptide 99.3 3.2E-10 1.1E-14 99.7 20.0 163 404-572 10-172 (186)
82 4i17_A Hypothetical protein; T 99.3 6.5E-10 2.2E-14 101.5 22.7 207 400-643 5-222 (228)
83 4i17_A Hypothetical protein; T 99.3 7.8E-10 2.7E-14 101.0 22.6 207 366-588 6-222 (228)
84 3as5_A MAMA; tetratricopeptide 99.3 3.9E-10 1.3E-14 99.1 19.4 163 120-290 10-172 (186)
85 3edt_B KLC 2, kinesin light ch 99.2 4.5E-11 1.5E-15 113.4 12.6 206 437-663 43-280 (283)
86 3edt_B KLC 2, kinesin light ch 99.2 1.7E-10 6E-15 109.3 14.8 231 95-326 13-281 (283)
87 1qqe_A Vesicular transport pro 99.2 1.3E-09 4.3E-14 103.7 20.4 201 377-579 47-273 (292)
88 3mv2_B Coatomer subunit epsilo 99.2 1.9E-08 6.6E-13 93.2 26.6 187 386-581 85-288 (310)
89 2uy1_A Cleavage stimulation fa 99.2 6.4E-08 2.2E-12 98.5 32.5 358 168-572 28-412 (493)
90 2uy1_A Cleavage stimulation fa 99.2 6.8E-08 2.3E-12 98.4 32.3 124 403-534 287-411 (493)
91 3qky_A Outer membrane assembly 99.1 2.8E-09 9.5E-14 99.6 19.4 195 437-657 15-254 (261)
92 3qky_A Outer membrane assembly 99.1 2.1E-09 7.3E-14 100.4 18.3 193 366-580 14-229 (261)
93 3urz_A Uncharacterized protein 99.1 2.3E-09 7.9E-14 96.0 16.0 138 477-643 59-198 (208)
94 3mv2_B Coatomer subunit epsilo 99.1 1.5E-07 5.2E-12 87.2 26.8 180 281-467 85-283 (310)
95 1qqe_A Vesicular transport pro 99.0 6.3E-09 2.2E-13 98.8 17.7 97 86-182 40-146 (292)
96 3urz_A Uncharacterized protein 99.0 1.3E-08 4.6E-13 91.0 18.6 171 82-264 3-192 (208)
97 4ga2_A E3 SUMO-protein ligase 99.0 1.6E-09 5.4E-14 91.1 11.4 144 478-650 3-149 (150)
98 2pzi_A Probable serine/threoni 99.0 3E-09 1E-13 113.7 15.5 174 378-559 402-583 (681)
99 2fo7_A Synthetic consensus TPR 99.0 1.4E-08 4.9E-13 83.4 16.5 127 441-572 5-131 (136)
100 3dra_A Protein farnesyltransfe 99.0 2.5E-07 8.4E-12 86.9 26.4 234 383-644 49-302 (306)
101 2pzi_A Probable serine/threoni 99.0 3.9E-09 1.3E-13 112.8 16.0 160 413-581 402-569 (681)
102 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.9E-08 1E-12 90.1 19.2 186 82-292 3-214 (225)
103 2fo7_A Synthetic consensus TPR 99.0 2.9E-08 1E-12 81.5 17.5 128 405-535 4-131 (136)
104 3dra_A Protein farnesyltransfe 99.0 5E-07 1.7E-11 84.8 27.5 227 349-581 50-294 (306)
105 3rjv_A Putative SEL1 repeat pr 99.0 9.1E-08 3.1E-12 85.8 21.1 177 385-575 4-199 (212)
106 4ga2_A E3 SUMO-protein ligase 99.0 3E-09 1E-13 89.5 10.4 132 444-582 4-136 (150)
107 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.8E-08 1.6E-12 88.7 19.3 190 117-327 3-214 (225)
108 2r5s_A Uncharacterized protein 99.0 1.2E-08 4.1E-13 88.6 14.6 53 126-180 14-66 (176)
109 3qou_A Protein YBBN; thioredox 98.9 2.6E-08 8.9E-13 94.2 17.3 162 155-323 118-281 (287)
110 3qou_A Protein YBBN; thioredox 98.9 3.1E-08 1E-12 93.7 17.2 167 401-572 116-283 (287)
111 3rjv_A Putative SEL1 repeat pr 98.9 2.4E-07 8.3E-12 83.0 21.0 163 331-502 17-198 (212)
112 2r5s_A Uncharacterized protein 98.9 5.7E-08 1.9E-12 84.3 16.0 162 156-324 8-171 (176)
113 2ifu_A Gamma-SNAP; membrane fu 98.9 9.5E-08 3.2E-12 91.4 18.9 187 376-565 45-253 (307)
114 2vsy_A XCC0866; transferase, g 98.9 4.1E-08 1.4E-12 103.1 17.5 156 380-539 2-160 (568)
115 2vsy_A XCC0866; transferase, g 98.8 1.3E-07 4.5E-12 99.3 18.6 154 345-502 2-158 (568)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.6E-07 1.2E-11 82.1 18.0 145 475-635 9-154 (213)
117 3gyz_A Chaperone protein IPGC; 98.7 8.4E-08 2.9E-12 80.0 11.7 104 471-580 35-138 (151)
118 4gco_A Protein STI-1; structur 98.7 3E-07 1E-11 74.3 14.6 104 473-582 14-117 (126)
119 3q7a_A Farnesyltransferase alp 98.7 5.7E-06 2E-10 78.4 25.4 256 379-645 66-347 (349)
120 4f3v_A ESX-1 secretion system 98.7 6.5E-07 2.2E-11 81.9 18.1 192 130-326 18-237 (282)
121 2ifu_A Gamma-SNAP; membrane fu 98.7 3.5E-07 1.2E-11 87.4 17.3 58 125-182 43-104 (307)
122 3u3w_A Transcriptional activat 98.7 4E-06 1.4E-10 79.5 24.0 165 408-572 81-265 (293)
123 4gco_A Protein STI-1; structur 98.7 4.4E-07 1.5E-11 73.3 14.8 109 438-551 14-122 (126)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.3E-06 4.5E-11 78.3 18.2 127 121-256 9-150 (213)
125 2vgx_A Chaperone SYCD; alterna 98.7 7.5E-08 2.6E-12 80.5 9.2 98 471-572 20-117 (148)
126 3q7a_A Farnesyltransferase alp 98.7 2E-05 6.7E-10 74.7 26.6 144 91-242 62-216 (349)
127 2qfc_A PLCR protein; TPR, HTH, 98.7 8.2E-07 2.8E-11 84.3 17.2 171 119-289 76-264 (293)
128 1a17_A Serine/threonine protei 98.7 1.1E-06 3.9E-11 75.0 16.6 130 438-572 14-145 (166)
129 4f3v_A ESX-1 secretion system 98.6 4.8E-07 1.6E-11 82.7 14.4 191 95-292 18-238 (282)
130 1a17_A Serine/threonine protei 98.6 7.7E-07 2.6E-11 76.1 15.2 95 474-572 15-109 (166)
131 2qfc_A PLCR protein; TPR, HTH, 98.6 2E-06 6.7E-11 81.6 19.5 172 154-325 75-265 (293)
132 2c2l_A CHIP, carboxy terminus 98.6 2.5E-07 8.7E-12 87.0 13.1 98 401-500 3-100 (281)
133 3u3w_A Transcriptional activat 98.6 7E-07 2.4E-11 84.7 16.3 169 121-289 78-264 (293)
134 4gcn_A Protein STI-1; structur 98.6 3.4E-07 1.2E-11 74.1 11.6 115 507-642 8-123 (127)
135 3gyz_A Chaperone protein IPGC; 98.6 4E-07 1.4E-11 75.9 12.1 97 119-221 37-133 (151)
136 2e2e_A Formate-dependent nitri 98.6 3.2E-07 1.1E-11 79.6 12.0 119 449-572 22-143 (177)
137 2c2l_A CHIP, carboxy terminus 98.6 5E-07 1.7E-11 85.0 14.2 195 366-572 3-198 (281)
138 2lni_A Stress-induced-phosphop 98.6 1.8E-06 6.1E-11 70.4 14.9 118 436-558 15-132 (133)
139 3upv_A Heat shock protein STI1 98.6 1.4E-06 4.9E-11 70.4 13.9 110 473-588 5-120 (126)
140 3dss_A Geranylgeranyl transfer 98.6 5.5E-05 1.9E-09 71.3 26.3 231 385-643 48-317 (331)
141 2vyi_A SGTA protein; chaperone 98.6 2.4E-06 8.2E-11 69.3 15.3 119 437-560 12-130 (131)
142 1na0_A Designed protein CTPR3; 98.6 3.6E-06 1.2E-10 67.6 16.0 94 439-534 11-104 (125)
143 3gw4_A Uncharacterized protein 98.5 1.4E-06 4.6E-11 77.5 14.6 163 449-629 4-176 (203)
144 2e2e_A Formate-dependent nitri 98.5 4E-07 1.4E-11 79.0 10.7 121 482-629 20-144 (177)
145 3gw4_A Uncharacterized protein 98.5 1.2E-06 4E-11 77.9 13.8 157 415-572 5-175 (203)
146 4gcn_A Protein STI-1; structur 98.5 1.3E-06 4.4E-11 70.7 12.7 107 473-582 9-119 (127)
147 1na0_A Designed protein CTPR3; 98.5 2.3E-06 7.9E-11 68.7 14.4 57 122-180 13-69 (125)
148 2vgx_A Chaperone SYCD; alterna 98.5 7.2E-07 2.5E-11 74.4 11.4 112 424-538 9-120 (148)
149 2lni_A Stress-induced-phosphop 98.5 2.9E-06 1E-10 69.1 15.0 119 80-206 13-132 (133)
150 3dss_A Geranylgeranyl transfer 98.5 2.8E-05 9.7E-10 73.3 22.9 241 308-581 40-310 (331)
151 2vyi_A SGTA protein; chaperone 98.5 3.2E-06 1.1E-10 68.6 14.6 94 85-181 14-107 (131)
152 1p5q_A FKBP52, FK506-binding p 98.5 2.6E-06 8.8E-11 82.4 16.1 132 437-572 147-293 (336)
153 1p5q_A FKBP52, FK506-binding p 98.5 1.8E-06 6.2E-11 83.5 14.7 153 451-629 127-294 (336)
154 2xcb_A PCRH, regulatory protei 98.5 5.5E-07 1.9E-11 74.7 9.6 97 472-572 18-114 (142)
155 3upv_A Heat shock protein STI1 98.4 4.6E-06 1.6E-10 67.3 13.8 97 83-182 4-100 (126)
156 2xcb_A PCRH, regulatory protei 98.4 2.3E-06 7.8E-11 70.9 12.0 101 504-629 14-115 (142)
157 2fbn_A 70 kDa peptidylprolyl i 98.4 3.8E-07 1.3E-11 80.8 7.2 123 509-655 40-176 (198)
158 3sz7_A HSC70 cochaperone (SGT) 98.4 4.7E-06 1.6E-10 71.0 13.8 103 471-579 10-112 (164)
159 3q49_B STIP1 homology and U bo 98.4 7.1E-06 2.4E-10 67.3 14.1 96 472-571 9-104 (137)
160 1elw_A TPR1-domain of HOP; HOP 98.4 1.4E-05 4.7E-10 63.3 14.6 101 473-579 5-105 (118)
161 2fbn_A 70 kDa peptidylprolyl i 98.4 7.7E-06 2.6E-10 72.2 14.3 96 473-572 89-185 (198)
162 1hxi_A PEX5, peroxisome target 98.3 4.1E-06 1.4E-10 66.9 11.1 98 475-578 20-117 (121)
163 3q49_B STIP1 homology and U bo 98.3 7.9E-06 2.7E-10 67.0 13.3 103 434-538 6-108 (137)
164 1elr_A TPR2A-domain of HOP; HO 98.3 3.9E-06 1.3E-10 68.1 11.3 117 507-649 4-126 (131)
165 1elw_A TPR1-domain of HOP; HOP 98.3 2.2E-05 7.5E-10 62.1 15.2 94 121-220 7-100 (118)
166 3sz7_A HSC70 cochaperone (SGT) 98.3 1.2E-05 3.9E-10 68.5 14.2 99 82-183 10-108 (164)
167 2dba_A Smooth muscle cell asso 98.3 2.4E-05 8.1E-10 65.0 15.2 106 470-582 26-135 (148)
168 1hxi_A PEX5, peroxisome target 98.3 6.2E-06 2.1E-10 65.9 10.8 95 85-182 19-113 (121)
169 1elr_A TPR2A-domain of HOP; HO 98.3 7.8E-06 2.7E-10 66.2 11.7 98 84-182 5-107 (131)
170 4b4t_Q 26S proteasome regulato 98.3 2.8E-05 9.6E-10 78.4 17.9 98 474-571 137-243 (434)
171 2kck_A TPR repeat; tetratricop 98.3 9.1E-06 3.1E-10 63.7 11.2 98 473-572 7-105 (112)
172 2kck_A TPR repeat; tetratricop 98.2 1.2E-05 4E-10 63.0 11.5 98 82-182 5-105 (112)
173 4b4t_Q 26S proteasome regulato 98.2 4.5E-05 1.5E-09 76.9 18.7 167 87-253 8-201 (434)
174 2xev_A YBGF; tetratricopeptide 98.2 2.3E-05 7.8E-10 63.4 13.5 98 85-182 4-104 (129)
175 2dba_A Smooth muscle cell asso 98.2 4E-05 1.4E-09 63.6 15.1 101 435-538 26-130 (148)
176 3rkv_A Putative peptidylprolyl 98.2 1.8E-05 6.3E-10 67.1 13.0 110 475-589 14-141 (162)
177 3k9i_A BH0479 protein; putativ 98.2 3.8E-06 1.3E-10 66.8 7.9 85 485-572 3-89 (117)
178 2xev_A YBGF; tetratricopeptide 98.2 2.6E-05 9E-10 63.0 13.1 92 479-572 9-104 (129)
179 1ihg_A Cyclophilin 40; ppiase 98.2 8.6E-06 2.9E-10 79.6 11.8 96 543-662 272-368 (370)
180 3ro3_A PINS homolog, G-protein 98.2 4.6E-06 1.6E-10 70.7 8.8 137 509-662 11-156 (164)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.7E-05 5.7E-10 80.3 13.5 150 452-629 249-415 (457)
182 3ro3_A PINS homolog, G-protein 98.1 2.1E-05 7.3E-10 66.4 11.5 134 439-572 11-157 (164)
183 1wao_1 Serine/threonine protei 98.1 6.2E-06 2.1E-10 83.8 9.3 89 480-572 14-102 (477)
184 1wao_1 Serine/threonine protei 98.1 7.9E-06 2.7E-10 83.0 9.9 120 410-532 14-135 (477)
185 3k9i_A BH0479 protein; putativ 98.1 1E-05 3.5E-10 64.2 8.6 86 95-182 2-89 (117)
186 2hr2_A Hypothetical protein; a 98.1 1.8E-05 6.2E-10 65.0 9.7 91 477-572 16-130 (159)
187 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 4.1E-05 1.4E-09 77.4 14.5 125 118-247 268-405 (457)
188 3rkv_A Putative peptidylprolyl 98.1 4.5E-05 1.5E-09 64.6 12.7 98 83-182 11-125 (162)
189 1dce_A Protein (RAB geranylger 98.0 0.00032 1.1E-08 72.6 20.4 163 418-588 45-234 (567)
190 1ihg_A Cyclophilin 40; ppiase 98.0 5.7E-05 2E-09 73.7 13.9 140 402-565 223-362 (370)
191 2if4_A ATFKBP42; FKBP-like, al 98.0 2.2E-05 7.5E-10 75.8 10.5 148 402-572 179-327 (338)
192 2if4_A ATFKBP42; FKBP-like, al 98.0 1.5E-05 5.2E-10 77.0 9.2 150 437-629 179-328 (338)
193 1dce_A Protein (RAB geranylger 98.0 0.00036 1.2E-08 72.2 19.4 174 382-562 44-244 (567)
194 2hr2_A Hypothetical protein; a 98.0 7.4E-05 2.5E-09 61.4 11.3 29 155-183 12-40 (159)
195 1zu2_A Mitochondrial import re 97.9 4.6E-05 1.6E-09 62.5 9.1 99 485-589 15-134 (158)
196 2l6j_A TPR repeat-containing p 97.9 3.2E-05 1.1E-09 60.4 7.3 94 118-218 4-104 (111)
197 2l6j_A TPR repeat-containing p 97.8 3.5E-05 1.2E-09 60.2 6.2 69 506-579 3-71 (111)
198 1klx_A Cysteine rich protein B 97.8 0.00066 2.3E-08 55.3 13.7 111 451-574 9-127 (138)
199 3n71_A Histone lysine methyltr 97.7 0.00028 9.5E-09 71.1 13.5 127 446-572 318-463 (490)
200 3n71_A Histone lysine methyltr 97.7 0.0003 1E-08 70.9 12.7 97 229-325 353-463 (490)
201 2kat_A Uncharacterized protein 97.7 0.0005 1.7E-08 53.9 11.5 80 100-182 2-81 (115)
202 1zu2_A Mitochondrial import re 97.7 0.00011 3.9E-09 60.2 7.4 99 95-201 14-133 (158)
203 1klx_A Cysteine rich protein B 97.7 0.00095 3.2E-08 54.4 13.0 12 170-181 11-22 (138)
204 2kat_A Uncharacterized protein 97.6 0.00032 1.1E-08 55.1 9.5 79 490-572 3-81 (115)
205 1na3_A Designed protein CTPR2; 97.5 0.00083 2.8E-08 49.8 10.6 78 474-555 11-88 (91)
206 3ma5_A Tetratricopeptide repea 97.5 0.00032 1.1E-08 53.4 7.7 64 82-146 6-69 (100)
207 1na3_A Designed protein CTPR2; 97.5 0.0013 4.5E-08 48.7 10.8 61 85-146 11-71 (91)
208 3ma5_A Tetratricopeptide repea 97.4 0.00072 2.5E-08 51.4 8.6 66 115-182 4-69 (100)
209 3ly7_A Transcriptional activat 97.0 0.011 3.8E-07 56.0 13.2 74 189-266 274-347 (372)
210 3ly7_A Transcriptional activat 96.9 0.014 4.7E-07 55.3 13.3 74 504-583 274-347 (372)
211 2kc7_A BFR218_protein; tetratr 96.9 0.0048 1.6E-07 46.5 8.6 57 124-182 6-63 (99)
212 2kc7_A BFR218_protein; tetratr 96.8 0.0059 2E-07 46.0 8.8 56 514-572 7-63 (99)
213 3qwp_A SET and MYND domain-con 96.8 0.0096 3.3E-07 59.0 12.5 99 514-629 294-400 (429)
214 3qww_A SET and MYND domain-con 96.8 0.0041 1.4E-07 61.5 9.8 93 520-629 311-411 (433)
215 3bee_A Putative YFRE protein; 96.8 0.024 8.4E-07 41.9 11.4 67 80-147 3-72 (93)
216 3bee_A Putative YFRE protein; 96.7 0.024 8.2E-07 41.9 11.1 65 470-535 4-71 (93)
217 3u64_A Protein TP_0956; tetrat 96.7 0.28 9.4E-06 44.5 19.3 127 205-335 134-280 (301)
218 3qwp_A SET and MYND domain-con 96.7 0.0097 3.3E-07 58.9 11.0 92 128-219 297-398 (429)
219 3mkq_B Coatomer subunit alpha; 96.6 0.15 5E-06 42.4 15.9 99 129-252 16-114 (177)
220 3u64_A Protein TP_0956; tetrat 96.6 0.39 1.3E-05 43.5 19.5 87 454-544 180-277 (301)
221 3qww_A SET and MYND domain-con 96.5 0.007 2.4E-07 59.8 9.0 86 168-253 312-408 (433)
222 1pc2_A Mitochondria fission pr 96.4 0.031 1.1E-06 45.2 10.5 93 489-587 15-112 (152)
223 3mkq_A Coatomer beta'-subunit; 96.4 0.073 2.5E-06 58.3 17.3 152 128-322 609-761 (814)
224 3lvg_A Clathrin heavy chain 1; 96.3 7.3E-07 2.5E-11 85.3 -19.6 265 82-387 53-324 (624)
225 2v5f_A Prolyl 4-hydroxylase su 96.2 0.053 1.8E-06 41.1 10.3 63 120-182 7-74 (104)
226 1pc2_A Mitochondria fission pr 96.1 0.049 1.7E-06 44.0 10.1 80 102-182 17-99 (152)
227 2v5f_A Prolyl 4-hydroxylase su 96.1 0.045 1.5E-06 41.6 9.6 67 81-147 3-75 (104)
228 3mkq_A Coatomer beta'-subunit; 96.0 0.14 4.8E-06 56.0 16.8 156 90-288 606-762 (814)
229 4h7y_A Dual specificity protei 95.7 0.07 2.4E-06 42.4 9.1 100 81-182 11-122 (161)
230 4h7y_A Dual specificity protei 95.5 0.16 5.4E-06 40.5 10.4 103 150-257 9-124 (161)
231 3mkq_B Coatomer subunit alpha; 95.4 0.99 3.4E-05 37.5 16.4 100 413-533 16-115 (177)
232 3ffl_A Anaphase-promoting comp 95.3 0.26 8.8E-06 40.2 11.1 62 85-146 22-91 (167)
233 1wy6_A Hypothetical protein ST 95.1 0.89 3E-05 35.4 15.5 140 129-294 18-157 (172)
234 3lvg_A Clathrin heavy chain 1; 95.1 3.3E-06 1.1E-10 80.9 -20.5 235 367-660 54-290 (624)
235 1wy6_A Hypothetical protein ST 94.8 1.1 3.8E-05 34.9 16.4 147 406-576 9-157 (172)
236 1nzn_A CGI-135 protein, fissio 94.7 0.26 8.8E-06 38.3 9.3 23 513-535 80-102 (126)
237 4b4t_P 26S proteasome regulato 94.6 3.8 0.00013 40.5 21.2 97 476-572 141-246 (445)
238 1nzn_A CGI-135 protein, fissio 94.1 0.17 5.8E-06 39.3 7.1 67 81-147 33-103 (126)
239 4ady_A RPN2, 26S proteasome re 94.0 8.3 0.00028 41.6 41.1 269 306-588 383-670 (963)
240 4b4t_P 26S proteasome regulato 93.8 5.2 0.00018 39.5 19.3 97 229-325 139-246 (445)
241 4fhn_B Nucleoporin NUP120; pro 92.8 2.6 9E-05 47.7 17.1 52 88-144 817-868 (1139)
242 3txn_A 26S proteasome regulato 92.6 1.3 4.4E-05 42.7 12.3 98 549-662 104-208 (394)
243 1y8m_A FIS1; mitochondria, unk 92.3 1.1 3.8E-05 35.4 9.3 68 80-147 36-106 (144)
244 2wpv_A GET4, UPF0363 protein Y 92.3 7 0.00024 36.1 17.1 26 261-286 133-158 (312)
245 3lpz_A GET4 (YOR164C homolog); 92.2 7.3 0.00025 36.3 20.7 81 543-628 135-215 (336)
246 2wpv_A GET4, UPF0363 protein Y 92.2 7.2 0.00024 36.0 18.8 66 404-484 35-104 (312)
247 3o48_A Mitochondria fission 1 92.2 0.86 2.9E-05 35.5 8.4 68 80-147 37-107 (134)
248 4gns_B Protein CSD3, chitin bi 91.7 1.2 4.1E-05 46.9 11.7 126 406-533 252-397 (754)
249 3ffl_A Anaphase-promoting comp 91.7 0.67 2.3E-05 37.8 7.6 118 117-236 19-164 (167)
250 2ff4_A Probable regulatory pro 91.5 4.2 0.00014 39.4 14.7 71 549-642 176-252 (388)
251 4fhn_B Nucleoporin NUP120; pro 91.3 8.9 0.0003 43.4 19.2 144 159-313 817-987 (1139)
252 4gns_B Protein CSD3, chitin bi 90.7 1.4 4.9E-05 46.4 11.1 128 87-219 252-398 (754)
253 2ff4_A Probable regulatory pro 90.4 1.1 3.9E-05 43.4 9.6 72 509-583 173-249 (388)
254 3o48_A Mitochondria fission 1 90.2 3.6 0.00012 32.0 10.1 81 504-588 37-120 (134)
255 1y8m_A FIS1; mitochondria, unk 88.4 8.1 0.00028 30.6 12.1 81 504-588 36-119 (144)
256 2p58_C Putative type III secre 86.2 7.9 0.00027 28.2 8.9 78 96-182 20-97 (116)
257 3txn_A 26S proteasome regulato 85.4 27 0.00092 33.6 21.4 27 368-394 20-46 (394)
258 2uwj_G Type III export protein 84.8 7.7 0.00026 28.2 8.2 78 96-182 19-96 (115)
259 4ady_A RPN2, 26S proteasome re 83.8 53 0.0018 35.6 45.0 26 265-290 233-258 (963)
260 1zbp_A Hypothetical protein VP 83.8 3.1 0.00011 37.1 7.3 52 448-500 8-59 (273)
261 3lpz_A GET4 (YOR164C homolog); 83.4 29 0.00099 32.3 21.0 25 261-285 135-159 (336)
262 4b4t_R RPN7, 26S proteasome re 82.8 5.6 0.00019 39.1 9.8 60 474-533 133-194 (429)
263 4b4t_R RPN7, 26S proteasome re 82.3 8 0.00027 38.0 10.7 125 488-629 110-237 (429)
264 1v54_E Cytochrome C oxidase po 81.6 13 0.00046 27.2 9.1 47 245-291 28-74 (109)
265 1v54_E Cytochrome C oxidase po 81.3 14 0.00047 27.1 9.3 46 525-572 28-73 (109)
266 1qsa_A Protein (soluble lytic 81.2 53 0.0018 33.9 37.8 399 203-657 17-435 (618)
267 2y69_E Cytochrome C oxidase su 78.4 15 0.00053 28.5 8.4 47 487-533 68-114 (152)
268 2y69_E Cytochrome C oxidase su 77.6 22 0.00076 27.6 9.1 47 245-291 71-117 (152)
269 1zbp_A Hypothetical protein VP 76.4 39 0.0013 30.2 11.8 119 127-255 6-128 (273)
270 3esl_A Checkpoint serine/threo 76.1 35 0.0012 28.9 11.5 57 240-296 92-149 (202)
271 3esl_A Checkpoint serine/threo 68.0 18 0.0006 30.7 7.3 53 170-225 95-148 (202)
272 2uwj_G Type III export protein 65.6 37 0.0012 24.8 9.1 86 486-582 20-105 (115)
273 2p58_C Putative type III secre 64.7 38 0.0013 24.7 10.1 79 486-574 21-99 (116)
274 3eiq_C Programmed cell death p 56.9 1.3E+02 0.0045 28.3 12.7 63 336-399 221-285 (358)
275 4a1g_A Mitotic checkpoint seri 56.9 75 0.0026 25.5 10.9 53 244-296 82-135 (152)
276 2wvi_A Mitotic checkpoint seri 53.2 28 0.00095 28.4 5.8 31 195-225 99-129 (164)
277 4a1g_A Mitotic checkpoint seri 50.6 96 0.0033 24.9 9.5 54 561-634 82-135 (152)
278 2wvi_A Mitotic checkpoint seri 50.1 1E+02 0.0035 25.1 11.2 53 245-297 78-131 (164)
279 4aez_C MAD3, mitotic spindle c 49.5 1.2E+02 0.0043 26.1 9.5 53 244-296 131-184 (223)
280 1qsa_A Protein (soluble lytic 45.4 2.7E+02 0.0093 28.6 43.7 52 479-533 388-439 (618)
281 3ltm_A Alpha-REP4; protein eng 45.1 1.4E+02 0.0047 25.1 20.3 17 82-98 32-48 (211)
282 2ion_A PDCD4, programmed cell 44.5 1.1E+02 0.0038 24.5 8.1 24 510-533 12-35 (152)
283 2zu6_B Programmed cell death p 44.3 1.5E+02 0.005 27.3 10.0 66 510-578 169-236 (307)
284 4b4t_S RPN3, 26S proteasome re 43.7 2.4E+02 0.0081 28.2 11.7 66 154-220 231-298 (523)
285 3eiq_C Programmed cell death p 41.8 2.3E+02 0.0078 26.7 14.2 68 509-579 219-288 (358)
286 2qx5_A Nucleoporin NIC96; mRNA 41.7 3.2E+02 0.011 28.4 19.7 18 610-627 548-565 (661)
287 1wdy_A 2-5A-dependent ribonucl 40.8 89 0.003 27.8 8.3 16 201-216 11-26 (285)
288 2d2s_A Exocyst complex compone 39.3 1.7E+02 0.0059 25.5 9.2 28 331-358 90-117 (235)
289 4gq2_M Nucleoporin NUP120; bet 37.3 2.3E+02 0.0077 31.2 11.8 132 123-276 815-950 (950)
290 2nsz_A Programmed cell death p 37.3 1.4E+02 0.0049 23.0 9.4 64 510-576 10-75 (129)
291 2r9g_A AAA ATPase, central reg 37.2 1.9E+02 0.0064 24.4 9.6 92 408-500 17-116 (204)
292 3bge_A Predicted ATPase; struc 37.2 1.9E+02 0.0064 24.4 8.5 34 414-447 19-52 (201)
293 4aez_C MAD3, mitotic spindle c 37.2 34 0.0012 29.5 4.2 51 210-260 132-183 (223)
294 4b4t_S RPN3, 26S proteasome re 34.9 3.6E+02 0.012 26.9 11.5 124 191-322 230-366 (523)
295 2d2s_A Exocyst complex compone 32.6 2.5E+02 0.0086 24.5 9.5 28 401-428 90-117 (235)
296 4gq2_M Nucleoporin NUP120; bet 32.4 2.9E+02 0.01 30.3 11.7 132 88-241 815-950 (950)
297 3ctd_A Putative ATPase, AAA fa 32.0 2.4E+02 0.0081 24.0 9.0 92 408-500 38-137 (213)
298 3ltj_A Alpharep-4; protein eng 30.6 2.3E+02 0.0079 23.4 21.3 175 80-278 25-199 (201)
299 2ion_A PDCD4, programmed cell 30.6 1.7E+02 0.0059 23.4 7.2 23 301-323 13-35 (152)
300 3pvs_A Replication-associated 29.4 4.1E+02 0.014 25.9 13.8 22 415-436 268-289 (447)
301 3eu9_A Huntingtin-interacting 29.1 1.6E+02 0.0055 25.1 7.8 15 202-216 16-30 (240)
302 3eu9_A Huntingtin-interacting 28.5 99 0.0034 26.5 6.2 21 198-218 45-65 (240)
303 2o03_A Probable zinc uptake re 28.4 1.3E+02 0.0043 23.3 6.0 48 87-134 14-61 (131)
304 3eyy_A Putative iron uptake re 28.2 1.1E+02 0.0036 24.3 5.6 55 77-133 13-67 (145)
305 2xig_A Ferric uptake regulatio 28.0 2.3E+02 0.0077 22.5 8.1 32 382-413 41-72 (150)
306 3jxi_A Vanilloid receptor-rela 27.6 49 0.0017 29.3 4.0 23 236-258 11-33 (260)
307 2nsz_A Programmed cell death p 27.5 2.1E+02 0.0072 22.0 8.5 22 302-323 12-33 (129)
308 3kea_A K1L; tropism, ANK repea 27.4 2E+02 0.0067 25.8 8.2 18 200-217 36-53 (285)
309 3e3v_A Regulatory protein RECX 26.9 2.6E+02 0.0089 23.0 7.9 25 547-571 139-164 (177)
310 4ets_A Ferric uptake regulatio 26.7 81 0.0028 25.6 4.7 65 68-133 18-84 (162)
311 2fe3_A Peroxide operon regulat 26.7 2.3E+02 0.0079 22.3 7.4 9 386-394 40-48 (145)
312 1wdy_A 2-5A-dependent ribonucl 25.4 1.6E+02 0.0056 25.9 7.3 15 517-531 226-240 (285)
313 3mwm_A ZUR, putative metal upt 25.2 1.3E+02 0.0043 23.7 5.5 48 87-134 17-64 (139)
314 2ijq_A Hypothetical protein; s 25.0 2.7E+02 0.0094 22.5 8.4 59 555-629 43-104 (161)
315 1ug3_A EIF4GI, eukaryotic prot 25.0 1.8E+02 0.0061 27.2 7.4 25 475-499 14-38 (339)
316 1bpo_A Protein (clathrin); cla 24.8 4.6E+02 0.016 25.7 9.9 82 206-291 343-424 (494)
317 1bpo_A Protein (clathrin); cla 24.3 4E+02 0.014 26.1 9.4 30 114-143 357-386 (494)
318 3kae_A CDC27, possible protein 24.2 3E+02 0.01 22.6 13.9 129 92-255 11-142 (242)
319 3t8k_A Uncharacterized protein 23.1 3.1E+02 0.011 22.5 8.1 29 233-261 41-69 (186)
320 2crb_A Nuclear receptor bindin 23.1 73 0.0025 22.7 3.1 19 640-658 20-38 (97)
321 3mv2_A Coatomer subunit alpha; 22.9 4.5E+02 0.015 24.2 12.5 51 207-257 185-237 (325)
322 1mzb_A Ferric uptake regulatio 22.9 1.7E+02 0.0059 22.7 5.9 55 79-134 14-69 (136)
323 1k1a_A B-cell lymphoma 3-encod 22.7 1.5E+02 0.0053 25.3 6.3 22 236-257 15-36 (241)
324 1mzb_A Ferric uptake regulatio 22.3 2.3E+02 0.0077 22.0 6.5 13 419-431 35-47 (136)
325 3pvs_A Replication-associated 22.1 5.5E+02 0.019 25.0 14.3 21 381-401 269-289 (447)
326 3bqo_A Telomeric repeat-bindin 21.9 72 0.0025 26.7 3.3 77 99-177 94-174 (211)
327 2fe3_A Peroxide operon regulat 21.8 1.8E+02 0.006 23.0 5.8 47 87-133 25-71 (145)
328 2qx5_A Nucleoporin NIC96; mRNA 21.8 6.8E+02 0.023 25.9 21.8 17 644-660 547-563 (661)
329 3bge_A Predicted ATPase; struc 21.7 3.6E+02 0.012 22.7 9.6 27 557-583 20-46 (201)
330 2ijq_A Hypothetical protein; s 21.6 3.2E+02 0.011 22.1 8.2 51 240-290 45-103 (161)
331 1ug3_A EIF4GI, eukaryotic prot 21.4 70 0.0024 30.0 3.8 64 439-504 13-78 (339)
332 2xig_A Ferric uptake regulatio 20.8 1.7E+02 0.0057 23.3 5.5 47 87-133 30-76 (150)
333 3hra_A Ankyrin repeat family p 20.4 2.3E+02 0.008 23.2 6.9 16 202-217 12-27 (201)
334 3hra_A Ankyrin repeat family p 20.2 1.6E+02 0.0056 24.2 5.8 16 236-251 11-26 (201)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.8e-41 Score=357.13 Aligned_cols=488 Identities=10% Similarity=0.028 Sum_probs=415.0
Q ss_pred CChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 006010 81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSV 160 (664)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 160 (664)
++...|..++..+.+.|++++|..+|+++.... ++...+..++.+|.+.|++++|+.+|+.+.. .++++.+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHH
Confidence 467789999999999999999999999998654 3557888999999999999999999998854 36789999999
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcc------------cCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHH
Q 006010 161 LNVIIQEGLYHRALEFYNHIVNAK------------HMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIY 228 (664)
Q Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~------------~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 228 (664)
+.+|.+.|++++|.++|+++.... ..+.+++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 235 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYE 235 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhH
Confidence 999999999999999998543211 01234467899999999999999999999999998875 44566
Q ss_pred HHHHHHHHHHhcCChhHHH--HH-HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006010 229 TYCTLMDGLCKENRLDEAV--LL-LDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIH 305 (664)
Q Consensus 229 ~~~~l~~~~~~~g~~~~a~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 305 (664)
.+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++... +++..+++.++.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 6777766554443322221 11 455555444455667778888999999999999999998765 578999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 006010 306 GLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAED 385 (664)
Q Consensus 306 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (664)
.|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+..+ .+..+++.++..|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999999875 44788999999999999999999999999987654 378899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010 386 AMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAK 465 (664)
Q Consensus 386 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 465 (664)
|.++|+++.+... .+..+|..++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+.+.+
T Consensus 392 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999988643 368899999999999999999999999999875 66889999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCcC--HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCC
Q 006010 466 NNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSR----GCKPD--VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPK 539 (664)
Q Consensus 466 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 539 (664)
.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|++++...+.
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 76 567899999999999999999999999999876 56777 789999999999999999999999999765443
Q ss_pred CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010 540 SQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFL 586 (664)
Q Consensus 540 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 586 (664)
+..+|..+..+|.+.|++++|.+.++++.+ +.|+.......+
T Consensus 549 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l 590 (597)
T 2xpi_A 549 ---DANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLL 590 (597)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred ---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHH
Confidence 788999999999999999999999999998 567655444333
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-41 Score=357.37 Aligned_cols=506 Identities=12% Similarity=0.028 Sum_probs=377.1
Q ss_pred HHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhH
Q 006010 93 YANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHR 172 (664)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 172 (664)
+...|.+..+...+... +.++...|+.++..|.+.|++++|+.+|+++.. ..|+..++..++.+|.+.|++++
T Consensus 63 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~ 135 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYAR 135 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHH
Confidence 33444444444443322 223455677777777777777777777777754 34566677777777777777777
Q ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006010 173 ALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDE 252 (664)
Q Consensus 173 A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 252 (664)
|..+|+.+.. .+++..+++.++.+|.+.|++++|+++|+++.... .. ...+.+.++
T Consensus 136 A~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~-----~~~~~~~~~---------- 191 (597)
T 2xpi_A 136 AKCLLTKEDL-----YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR----KD-----EKNANKLLM---------- 191 (597)
T ss_dssp HHHHHHHTCG-----GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-------------------C----------
T ss_pred HHHHHHHHhc-----cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcc----cc-----ccccccccc----------
Confidence 7777777643 34566777777777777777777777777533221 00 001111111
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH--HH-HHHHHHCCCC
Q 006010 253 MQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAV--SL-LDRMVASKCM 329 (664)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~--~~-~~~~~~~~~~ 329 (664)
...+.+++..+|+.++.+|.+.|++++|+++|++|...++. +...+..+...+...+..+.+. .+ +..+...+..
T Consensus 192 -~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 192 -QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp -CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred -cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 11234556788888888888888888888888888876432 4555555555443332222211 11 3444444334
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006010 330 PNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALI 409 (664)
Q Consensus 330 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 409 (664)
+...+|+.++..|.+.|++++|.++++++.+. +++..+++.++.+|.+.|++++|+.+|+++.+.+.. +..++..++
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 346 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHL 346 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHH
Confidence 44556677788888899999999999988775 468899999999999999999999999999987643 778899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChH
Q 006010 410 DGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLR 489 (664)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 489 (664)
.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|+++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998764 6688999999999999999999999999998865 567889999999999999999
Q ss_pred HHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 006010 490 EARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNS 569 (664)
Q Consensus 490 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 569 (664)
+|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|++++...+. +..+|+.++..|.+.|++++|.++|++
T Consensus 425 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 425 QAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY---DPLLLNELGVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp HHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999864 447789999999999999999999999999765444 788999999999999999999999999
Q ss_pred HHHC----CCCCC--HHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHH
Q 006010 570 MMDR----GCDPD--LVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQ 643 (664)
Q Consensus 570 ~~~~----~~~p~--~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 643 (664)
+.+. +..|+ ..++..+... |.+.|++++|.++++++.+.+ +.++..|..++.
T Consensus 501 ~~~~~~~~~~~p~~~~~~~~~l~~~---------------------~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~ 558 (597)
T 2xpi_A 501 ALLLVKKTQSNEKPWAATWANLGHA---------------------YRKLKMYDAAIDALNQGLLLS-TNDANVHTAIAL 558 (597)
T ss_dssp HHHHHHHSCCCSGGGHHHHHHHHHH---------------------HHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHH
T ss_pred HHHhhhccccchhhHHHHHHHHHHH---------------------HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 9875 66777 5667777666 999999999999999999863 558899999999
Q ss_pred HhcccchHHHHHHHHHhhh
Q 006010 644 ELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 644 ~~~~~g~~~~A~~~~~~~l 662 (664)
+|.+.|++++|.+.+++.+
T Consensus 559 ~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 559 VYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 9999999999999998765
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.2e-27 Score=238.51 Aligned_cols=382 Identities=16% Similarity=0.048 Sum_probs=188.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHh
Q 006010 125 FKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCR 204 (664)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 204 (664)
+..+.+.|++++|++.+..+.+. .+.+...+..+...+.+.|++++|...++...+. .+.+..+|..+...+.+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~----~p~~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHH
Confidence 34445556666666666555443 3334455555555556666666666666555541 12244455555555556
Q ss_pred cCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006010 205 LGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKL 284 (664)
Q Consensus 205 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 284 (664)
.|++++|++.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.
T Consensus 80 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 666666666665555442 3334455555555566666666666655555432 11233444455555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 006010 285 VDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFH 364 (664)
Q Consensus 285 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 364 (664)
|+++....+ .+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+.+.....+.
T Consensus 158 ~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 158 YLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 555554421 134455555555555555555555555555432 222333444444444444444444444444333221
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010 365 VNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLM 444 (664)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 444 (664)
+ ..++..+...+...|++++|...++++++.. +.+..++..+.
T Consensus 236 -~-----------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 278 (388)
T 1w3b_A 236 -H-----------------------------------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLA 278 (388)
T ss_dssp -C-----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHH
T ss_pred -C-----------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 2 3344444444444444444444444444432 22344444445
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHH
Q 006010 445 KGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVE 524 (664)
Q Consensus 445 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 524 (664)
..+.+.|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++++.. +.+..++..++.++.+.|+++
T Consensus 279 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 356 (388)
T 1w3b_A 279 NALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHH
Confidence 55555555555555555544433 3444455555555555555555555555555431 223445555555555555555
Q ss_pred HHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC
Q 006010 525 EALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS 558 (664)
Q Consensus 525 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 558 (664)
+|...|++++...|. +...|..+...+...|
T Consensus 357 ~A~~~~~~a~~~~p~---~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 357 EALMHYKEAIRISPT---FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhCCC---CHHHHHhHHHHHHHcc
Confidence 555555555433222 3444555555444433
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.2e-27 Score=238.60 Aligned_cols=372 Identities=15% Similarity=0.101 Sum_probs=274.1
Q ss_pred HHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 006010 201 TVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGR 280 (664)
Q Consensus 201 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 280 (664)
.+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...... +.+..+|..+...|.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 3445555555555555554442 3344455555555556666666666665555432 3345566666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006010 281 AAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEE 360 (664)
Q Consensus 281 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 360 (664)
|+..|+++.... +.+..+|..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.+.++.+
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666665542 1234456666666666666666666666666542 22344555566666667777777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010 361 RKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTY 440 (664)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 440 (664)
..+. +..++..+...+.+.|++++|+..|+++.+.+.. +...+..+...+...|++++|...++++.+.. +.+..++
T Consensus 164 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 164 TQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 5433 5677788888888888888888888888876433 56778888889999999999999999998864 5578899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc
Q 006010 441 SSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA 520 (664)
Q Consensus 441 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 520 (664)
..+...|...|++++|.+.++++.+.. +.+..+|..++..+...|++++|.+.++++++.. +.+..++..++..+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc
Confidence 999999999999999999999999876 5567889999999999999999999999999863 55778999999999999
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 006010 521 GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV-TCNIFL 586 (664)
Q Consensus 521 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll 586 (664)
|++++|...+++++...+. +...+..+..++.+.|++++|...++++.+ ..|+.. .+..+.
T Consensus 319 g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg 380 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 380 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTT---CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHH
Confidence 9999999999999654333 677899999999999999999999999997 677644 344433
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.7e-28 Score=249.79 Aligned_cols=202 Identities=18% Similarity=0.205 Sum_probs=120.2
Q ss_pred HHHhhcccCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------hhHHH
Q 006010 213 QLFREMPVRNCEPDIY-TYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGE---------LGRAA 282 (664)
Q Consensus 213 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~a~ 282 (664)
.+.+.+.+.+..+.+. .++.+|++|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+. +++|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 3444444444333332 3555566666666666666666666666666666666666666654433 45566
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006010 283 KLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERK 362 (664)
Q Consensus 283 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 362 (664)
++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010 363 FHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCR 414 (664)
Q Consensus 363 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 414 (664)
+.||..+|+.|+.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666666554
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.2e-28 Score=248.96 Aligned_cols=185 Identities=19% Similarity=0.253 Sum_probs=100.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHHHhCCCCCCHHHH
Q 006010 195 FNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENR---------LDEAVLLLDEMQVDGCFPTPVTF 265 (664)
Q Consensus 195 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~~~ 265 (664)
++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. +++|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444445555555555555555555555555555555555555444332 34455555555555555555555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 006010 266 NVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKL 345 (664)
Q Consensus 266 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 345 (664)
+.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010 346 GRAVDGARVLMSMEERKFHVNEYIYSTLISGLFK 379 (664)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (664)
|+.++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555543
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-24 Score=227.39 Aligned_cols=277 Identities=10% Similarity=-0.001 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----CCC--------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006010 297 EVTYNTLIHGLCL---KGNLDKAVSLLDRMVA-----SKC--------MPNEVTYGTIINGLVKLGRAVDGARVLMSMEE 360 (664)
Q Consensus 297 ~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 360 (664)
...+......+.. .|++++|..+++++.+ ..- +.+...+..+...+...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344444444443 6778888888887776 311 12345667777788888888888888888877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010 361 RKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTY 440 (664)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 440 (664)
..+. ...+..+..++...|++++|+..++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+
T Consensus 266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 341 (514)
T 2gw1_A 266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPY 341 (514)
T ss_dssp HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHH
T ss_pred hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHH
Confidence 6544 77778888888888888888888888887643 356678888888888899999999998888864 4567788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC-------HHhHHHH
Q 006010 441 SSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD-------VVAYSSM 513 (664)
Q Consensus 441 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l 513 (664)
..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++... .|+ ..++..+
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~l 418 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENKLDGIYVGIAPLVGK 418 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTSSSCSSCSHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhccchHHHHHHHHHHH
Confidence 888888889999999999998888765 456678888888899999999999999888764 222 2378888
Q ss_pred HHHHHH---cCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006010 514 IHGLCN---AGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIF 585 (664)
Q Consensus 514 ~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 585 (664)
+..+.. .|++++|...+++++...+. +...+..+...|.+.|++++|...++++.+ ..|+.......
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~ 488 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLDPR---SEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEEKLQA 488 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHHHHHH
Confidence 888988 89999999999998765543 567788888999999999999999999988 56766544333
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-24 Score=227.83 Aligned_cols=450 Identities=10% Similarity=0.017 Sum_probs=296.3
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHH
Q 006010 155 KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLM 234 (664)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 234 (664)
..+...+..+.+.|++++|+..|+++++ ..|+..++..+..++.+.|++++|++.++++.+.+ +.+..++..+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 80 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALE-----LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh-----cCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence 4455555666666666666666666655 22455566666666666666666666666665543 34455666666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006010 235 DGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLD 314 (664)
Q Consensus 235 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 314 (664)
.++.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+...+..-...........
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 66666666666666666666543 22333333333333332222233222222221111111111111111111111111
Q ss_pred HHHHHHHHHHHCCC---------CCChhhHHHHHHHHHh---cCChhHHHHHHHHHHH-----c--CC------CCCHHH
Q 006010 315 KAVSLLDRMVASKC---------MPNEVTYGTIINGLVK---LGRAVDGARVLMSMEE-----R--KF------HVNEYI 369 (664)
Q Consensus 315 ~a~~~~~~~~~~~~---------~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~--~~------~~~~~~ 369 (664)
....+...+..... +.+...+......+.. .|++++|...++++.+ . .+ +.+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 11111111111110 1224444455555554 8999999999999887 3 11 224567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006010 370 YSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFE 449 (664)
Q Consensus 370 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 449 (664)
+..+...+...|++++|+..++++.+.... ...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 888889999999999999999999987543 8888889999999999999999999999875 5577889999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHH
Q 006010 450 SGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKL 529 (664)
Q Consensus 450 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 529 (664)
.|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999876 4567788999999999999999999999998753 33567888999999999999999999
Q ss_pred HHHhhhcCCCCCCC---HhHHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHhhhhhccCCCCchhh
Q 006010 530 FNEMLCLEPKSQPD---VFTYNILLNALCK---QSNISHSIDLLNSMMDRGCDPDLV-TCNIFLTALKEKLEAPQDGTDF 602 (664)
Q Consensus 530 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~ 602 (664)
+++++...+..... ...|..+...+.. .|++++|...++++.+ ..|+.. .+..+..
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~--------------- 457 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--LDPRSEQAKIGLAQ--------------- 457 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH--HCTTCHHHHHHHHH---------------
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH--hCcccHHHHHHHHH---------------
Confidence 99997654432111 3378889999999 9999999999999997 345543 3333333
Q ss_pred hHHHHHHhhhcCCcchHHHHHHHHHHcCCCCC-hHHHHHH
Q 006010 603 LNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQ-TSTWERV 641 (664)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l 641 (664)
++.+.|++++|.+.++++.+. .|+ +..+..+
T Consensus 458 ------~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~ 489 (514)
T 2gw1_A 458 ------MKLQQEDIDEAITLFEESADL--ARTMEEKLQAI 489 (514)
T ss_dssp ------HHHHTTCHHHHHHHHHHHHHH--CSSHHHHHHHH
T ss_pred ------HHHHhcCHHHHHHHHHHHHHh--ccccHHHHHHH
Confidence 399999999999999999985 444 4444433
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=2.2e-23 Score=219.31 Aligned_cols=259 Identities=11% Similarity=0.064 Sum_probs=178.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006010 311 GNLDKAVSLLDRMVASKCMPNE-------VTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKA 383 (664)
Q Consensus 311 g~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (664)
|++++|..+++++.+.. +.+. .++..+...+...|++++|...+.++.+..+ +...+..+...+...|++
T Consensus 216 ~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCH
Confidence 35666666666666542 1121 2344555666667777777777777776543 356666777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006010 384 EDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDM 463 (664)
Q Consensus 384 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 463 (664)
++|+..++++.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+
T Consensus 293 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777776543 256677777777777888888888888777754 445667777778888888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC-----CcCHHhHHHHHHHHHHc----------CCHHHHHH
Q 006010 464 AKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGC-----KPDVVAYSSMIHGLCNA----------GSVEEALK 528 (664)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~----------g~~~~A~~ 528 (664)
.+.. +.+...+..+...+...|++++|...++++++... ......+......+... |++++|..
T Consensus 371 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~ 449 (537)
T 3fp2_A 371 KLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449 (537)
T ss_dssp HHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH
Confidence 7765 45566777788888888888888888888765421 01112234445666677 88888888
Q ss_pred HHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006010 529 LFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV 580 (664)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 580 (664)
.|++++...+. +...|..+..+|.+.|++++|...++++.+ +.|+..
T Consensus 450 ~~~~a~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~ 496 (537)
T 3fp2_A 450 LLTKACELDPR---SEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LARTMD 496 (537)
T ss_dssp HHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC--CH
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcH
Confidence 88888765544 567788888888888888899888888887 445443
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.8e-22 Score=207.14 Aligned_cols=397 Identities=12% Similarity=0.091 Sum_probs=264.6
Q ss_pred HHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010 212 IQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK 291 (664)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (664)
...+.++.... +.+...+..+...+.+.|++++|+.+|+++.... +.+..+|..+..++...|++++|...|+++...
T Consensus 12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33444444443 5567788888888999999999999999887653 346788888888899999999999999988877
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 006010 292 GCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNE---VTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEY 368 (664)
Q Consensus 292 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 368 (664)
+. .+..++..+...+...|++++|.+.|+++.+.. +.+. ..+..+...+.. .
T Consensus 90 ~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-----------------------~ 144 (450)
T 2y4t_A 90 KM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM-----------------------Q 144 (450)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-----------------------H
T ss_pred CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-----------------------H
Confidence 43 357788888888888999999999998888753 2223 445544433111 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006010 369 IYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFF 448 (664)
Q Consensus 369 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 448 (664)
.+..+...+.+.|++++|+..++++.+... .+..++..++.+|...|++++|...|+++.+.. +.+..++..+...|.
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYY 222 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 122334456667777777777777766532 256666777777777777777777777776653 445677777777777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHcCCChHHHHHHHHHHHhCCCCcC-----HHhHH
Q 006010 449 ESGKGHKAVEIWKDMAKNNCVYNEVCYSVL------------IHGLCEDGKLREARMVWTQMLSRGCKPD-----VVAYS 511 (664)
Q Consensus 449 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~ 511 (664)
..|++++|...++.+.... +.+...+..+ +..+...|++++|...|+++++. .|+ ...+.
T Consensus 223 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~ 299 (450)
T 2y4t_A 223 QLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKE 299 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHH
Confidence 7777777777777776654 3334444433 77888889999999999988874 344 34678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhh
Q 006010 512 SMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKE 591 (664)
Q Consensus 512 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 591 (664)
.++.++.+.|++++|+..+++++...+. +...|..+..+|...|++++|...++++.+ +.|+.......+..+..
T Consensus 300 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 300 RICHCFSKDEKPVEAIRVCSEVLQMEPD---NVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQR 374 (450)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHH
Confidence 8888889999999999999998655443 677888899999999999999999999987 66765544444432211
Q ss_pred hccCCCCchhhhHHHHHHhhhcC-----CcchHHHHHHH-HHHcCCCCC----h-------HHHHHHHHHhcccchHHHH
Q 006010 592 KLEAPQDGTDFLNELAIRLFKRQ-----RTSGGFKIVEV-MLQKFLSPQ----T-------STWERVVQELCRPKRIQAA 654 (664)
Q Consensus 592 ~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~-~~~~~~~~~----~-------~~~~~l~~~~~~~g~~~~A 654 (664)
..... ... ..|...| +.+++.+.+++ ..+. .|+ . ..+..+..+|-..|+.+++
T Consensus 375 ~~~~~-~~~-------~~y~~lg~~~~~~~~~~~~~y~~~~l~~--~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 375 LLKQS-QKR-------DYYKILGVKRNAKKQEIIKAYRKLALQW--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHH-HSC-------CSGGGSCSSTTCCTTHHHHHHHHHHHHS--CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred Hhhcc-cch-------hHHHHhCCCccCCHHHHHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 10000 000 0133344 55677888887 4443 232 2 2566677777777766554
Q ss_pred H
Q 006010 655 I 655 (664)
Q Consensus 655 ~ 655 (664)
.
T Consensus 445 ~ 445 (450)
T 2y4t_A 445 K 445 (450)
T ss_dssp -
T ss_pred H
Confidence 4
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.6e-22 Score=205.99 Aligned_cols=329 Identities=11% Similarity=0.053 Sum_probs=187.6
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHh
Q 006010 137 AIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFR 216 (664)
Q Consensus 137 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 216 (664)
+...+..++.. .+.++..+..++..+.+.|++++|..+|+++.+. .+.+..++..+..++...|++++|.+.|+
T Consensus 11 ~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 11 VDLGTENLYFQ--SMADVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccccccc--cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33344444332 4566778888888888888888898888888772 22356778888888888888888888888
Q ss_pred hcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006010 217 EMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTP---VTFNVLINGLCKNGELGRAAKLVDNMFLKGC 293 (664)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~ 293 (664)
++.+.+ +.+..++..+..+|.+.|++++|...|+++.... +.+. ..+..++..+...
T Consensus 85 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~------------------ 144 (450)
T 2y4t_A 85 KVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ------------------ 144 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH------------------
Confidence 887765 5567788888888888888888888888887753 2233 5555554431100
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006010 294 LPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTL 373 (664)
Q Consensus 294 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 373 (664)
.+..+...+...|++++|...++++.+.. +.+...+..+..+|...|++++|.+.++++.+.... +..++..+
T Consensus 145 -----~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l 217 (450)
T 2y4t_A 145 -----RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKI 217 (450)
T ss_dssp -----HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 11112223334444444444444444432 223444444444444555555555555444443221 34444455
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH------------HHHHHHhcCChhHHHHHHHHHHHCCCCCC----H
Q 006010 374 ISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSA------------LIDGLCRVGKPDEAEEILFEMINNGCAAN----A 437 (664)
Q Consensus 374 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~ 437 (664)
+.+|...|++++|+..|+++.+.... +...+.. +...+...|++++|...|+++++.. +.+ .
T Consensus 218 ~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~ 295 (450)
T 2y4t_A 218 STLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTV 295 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHH
Confidence 55555555555555555555443211 2222222 2555666666666666666666542 112 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 006010 438 FTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSR 501 (664)
Q Consensus 438 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (664)
..+..+...+.+.|++++|...++.+.+.. +.+...|..++.+|...|++++|...++++++.
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 355556666666666666666666665543 345566666666666666666666666666653
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=2e-22 Score=211.99 Aligned_cols=434 Identities=12% Similarity=0.012 Sum_probs=328.5
Q ss_pred ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 006010 82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVL 161 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 161 (664)
....+..+...+.+.|++++|...|+.+....+ .+..++..++.+|...|++++|++.|+++++. .+.+..++..++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHH
Confidence 346788899999999999999999999998774 47889999999999999999999999999876 456788999999
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC------CCCCHHHHHHHHH
Q 006010 162 NVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRN------CEPDIYTYCTLMD 235 (664)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~ 235 (664)
..+...|++++|...|+ ... ..|+. ....+..+...+....|...++.+.... ..|+.. .+.
T Consensus 101 ~~~~~~g~~~~A~~~~~-~~~-----~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~ 168 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLS-VLS-----LNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLA 168 (537)
T ss_dssp HHHHHHTCHHHHHHHHH-HHC------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHH
T ss_pred HHHHHcCCHHHHHHHHH-HHh-----cCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHH
Confidence 99999999999999997 433 22332 2223445556666788999998886541 123333 334
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHH--------hcCChhHHHHHHHHHHHcCCCCC-------HHH
Q 006010 236 GLCKENRLDEAVLLLDEMQVDGCFPTPV-TFNVLINGLC--------KNGELGRAAKLVDNMFLKGCLPN-------EVT 299 (664)
Q Consensus 236 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~--------~~g~~~~a~~~~~~~~~~g~~p~-------~~~ 299 (664)
.+....+.+.+...+...... .+... ....+...+. ..|++++|..+++++...... + ..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~ 245 (537)
T 3fp2_A 169 SFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALA 245 (537)
T ss_dssp HHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHH
Confidence 455556666555544333321 22222 2222322222 225789999999998876332 2 235
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006010 300 YNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFK 379 (664)
Q Consensus 300 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (664)
+..+...+...|++++|...++++.+. .|+...+..+...+...|++++|...+.++.+..+. +..++..+...+..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHh
Confidence 667777888899999999999999986 455788888999999999999999999999887654 67889999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010 380 EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEI 459 (664)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 459 (664)
.|++++|+..++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999987533 56788889999999999999999999999874 56778899999999999999999999
Q ss_pred HHHHHHCCC-----CCCHHHHHHHHHHHHcC----------CChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHH
Q 006010 460 WKDMAKNNC-----VYNEVCYSVLIHGLCED----------GKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVE 524 (664)
Q Consensus 460 ~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 524 (664)
++.+.+... ......+......+... |++++|...++++++.. +.+..++..++.+|...|+++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKID 479 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHH
Confidence 999876431 11222344455667777 99999999999999863 345788999999999999999
Q ss_pred HHHHHHHHhhhcCCC
Q 006010 525 EALKLFNEMLCLEPK 539 (664)
Q Consensus 525 ~A~~~~~~~~~~~~~ 539 (664)
+|...|++++...+.
T Consensus 480 ~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 480 EAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999765543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=9.1e-19 Score=173.56 Aligned_cols=324 Identities=13% Similarity=0.131 Sum_probs=234.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006010 226 DIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIH 305 (664)
Q Consensus 226 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 305 (664)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++..... .+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 35667777888888888888888888877653 33567777888888888888888888888777632 25677777888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006010 306 GLCLKGNLDKAVSLLDRMVASKCMP----NEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEG 381 (664)
Q Consensus 306 ~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (664)
.+...|++++|...++++.+.. | +...+..+...+. ...+..+...+...|
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 8888888888888888887653 3 2222222211100 112233456677788
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006010 382 KAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWK 461 (664)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 461 (664)
++++|+..++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++
T Consensus 135 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888777643 356677777778888888888888888887764 5567777888888888888888888888
Q ss_pred HHHHCCCCCCHHHHH------------HHHHHHHcCCChHHHHHHHHHHHhCCCCcC-H----HhHHHHHHHHHHcCCHH
Q 006010 462 DMAKNNCVYNEVCYS------------VLIHGLCEDGKLREARMVWTQMLSRGCKPD-V----VAYSSMIHGLCNAGSVE 524 (664)
Q Consensus 462 ~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~ 524 (664)
...+.. +.+...+. .+...+...|++++|...++++.+.. |+ . ..+..+..++...|+++
T Consensus 213 ~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 213 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHH
Confidence 877754 33333332 23666888999999999999988753 33 2 23556778899999999
Q ss_pred HHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010 525 EALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFL 586 (664)
Q Consensus 525 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 586 (664)
+|...+++++...+. +...|..+...+...|++++|...++++.+ +.|+.......+
T Consensus 290 ~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l 346 (359)
T 3ieg_A 290 EAIRICSEVLQMEPD---NVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHH
Confidence 999999999765443 677888999999999999999999999997 567755443333
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=8.1e-19 Score=173.94 Aligned_cols=332 Identities=12% Similarity=0.041 Sum_probs=222.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006010 191 NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLIN 270 (664)
Q Consensus 191 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 270 (664)
+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678888999999999999999999998875 5678899999999999999999999999998764 336788999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 006010 271 GLCKNGELGRAAKLVDNMFLKGCL--PNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRA 348 (664)
Q Consensus 271 ~~~~~g~~~~a~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 348 (664)
.+...|++++|...++++...... .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999999876320 13334433321100 00122233344445555
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010 349 VDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEM 428 (664)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 428 (664)
++|.+.++++.+..+. +...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+
T Consensus 137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555444322 34445555555555555555555555555442 224445555555555555555555555555
Q ss_pred HHCCCCCCHHHH------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHcCCChHHHH
Q 006010 429 INNGCAANAFTY------------SSLMKGFFESGKGHKAVEIWKDMAKNNCVYNE----VCYSVLIHGLCEDGKLREAR 492 (664)
Q Consensus 429 ~~~~~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~ 492 (664)
.+.. +.+...+ ..+...+...|++++|.+.++.+.+.. +.+. ..+..+...+...|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 5432 2222222 233566788888888888888888765 2233 23445777888899999999
Q ss_pred HHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHH
Q 006010 493 MVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALC 555 (664)
Q Consensus 493 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 555 (664)
..++++++.. +.+..++..++..+...|++++|...|+++++..|+ +...+..+..+..
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN---DQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHH
Confidence 9999888753 336778888899999999999999999999754443 4555655555543
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=1.4e-17 Score=172.21 Aligned_cols=351 Identities=11% Similarity=0.013 Sum_probs=197.1
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCH
Q 006010 191 NTLTFNLVIKTVCR----LGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK----ENRLDEAVLLLDEMQVDGCFPTP 262 (664)
Q Consensus 191 ~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 262 (664)
+...+..+...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|.+.|++..+.| ++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44555555555655 566666666666665544 45556666666666 666666666666666543 44
Q ss_pred HHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhh
Q 006010 263 VTFNVLINGLCK----NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL----KGNLDKAVSLLDRMVASKCMPNEVT 334 (664)
Q Consensus 263 ~~~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 334 (664)
..+..|...|.. .+++++|...|++....| +...+..+...|.. .++.++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 555556666655 556666666666665554 44455555555554 556666666666666553 4555
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 006010 335 YGTIINGLVK----LGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFK----EGKAEDAMKLWKQMMEKGCKPNTVVYS 406 (664)
Q Consensus 335 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 406 (664)
+..+...|.. .++.++|.+++.+..+.+ +...+..+...|.. .+++++|+..|++..+.| +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5555555555 566666666666655543 34455555555554 556666666666655543 334444
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006010 407 ALIDGLCR----VGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFES-----GKGHKAVEIWKDMAKNNCVYNEVCYSV 477 (664)
Q Consensus 407 ~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 477 (664)
.+...+.. .+++++|...|++..+.+ +...+..+...|... ++.++|...+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 45555554 556666666666665543 344445555555554 55666666666555543 3344444
Q ss_pred HHHHHHcCC---ChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHH----cCCHHHHHHHHHHhhhcCCCCCCCHhHHHHH
Q 006010 478 LIHGLCEDG---KLREARMVWTQMLSRGCKPDVVAYSSMIHGLCN----AGSVEEALKLFNEMLCLEPKSQPDVFTYNIL 550 (664)
Q Consensus 478 l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 550 (664)
+...|...| +.++|.+.|++..+.| +...+..+...|.. .+++++|..+|+++.. .+ +...+..+
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~~---~~~a~~~L 405 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE--QG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TT---CHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh--CC---CHHHHHHH
Confidence 555554444 4555666666555542 34455555555555 5556666666665532 22 34455555
Q ss_pred HHHHHH----cCChhHHHHHHHHHHHC
Q 006010 551 LNALCK----QSNISHSIDLLNSMMDR 573 (664)
Q Consensus 551 ~~~~~~----~g~~~~A~~~~~~~~~~ 573 (664)
...|.. .+++++|..+|++..+.
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 555555 55666666666665553
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=2.9e-17 Score=169.80 Aligned_cols=365 Identities=12% Similarity=0.032 Sum_probs=311.8
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHh----cC
Q 006010 135 EEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQ----EGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCR----LG 206 (664)
Q Consensus 135 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g 206 (664)
..+++.+....+ ..++.++..+...|.. .+++++|...|++..+ .+ +...+..+...|.. .+
T Consensus 24 ~~~~~~~~~~a~----~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~---~~---~~~a~~~Lg~~y~~g~g~~~ 93 (490)
T 2xm6_A 24 NVNLEQLKQKAE----SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE---QG---YTPAEYVLGLRYMNGEGVPQ 93 (490)
T ss_dssp -CCHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---TT---CHHHHHHHHHHHHHTSSSCC
T ss_pred hHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH---CC---CHHHHHHHHHHHHcCCCCCC
Confidence 334566666533 5688999999999998 8999999999999987 32 56778888889988 89
Q ss_pred ChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCh
Q 006010 207 LVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK----ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCK----NGEL 278 (664)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 278 (664)
++++|.+.|++..+.| +...+..|...|.. .+++++|...|++..+.| ++..+..|...|.. .+++
T Consensus 94 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 94 DYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 9999999999998876 67888889999988 889999999999998875 67788888888887 7899
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCChhH
Q 006010 279 GRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL----KGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVK----LGRAVD 350 (664)
Q Consensus 279 ~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~ 350 (664)
++|.+.|++..+.| +...+..+...|.. .++.++|.++|++..+.| +...+..+...|.. .++.++
T Consensus 168 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 168 VMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999998875 67888888888887 899999999999999875 67788888888886 789999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CChhHH
Q 006010 351 GARVLMSMEERKFHVNEYIYSTLISGLFK----EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRV-----GKPDEA 421 (664)
Q Consensus 351 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a 421 (664)
|.+++++..+.+ +...+..+...|.. .++.++|+..|++..+.| +...+..+...|... +++++|
T Consensus 242 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 242 SRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 999999998864 55677778888887 899999999999998765 566777788888877 899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCChHHHHHH
Q 006010 422 EEILFEMINNGCAANAFTYSSLMKGFFESG---KGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCE----DGKLREARMV 494 (664)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 494 (664)
...|++..+.+ +...+..+...|...| +.++|.+.+++..+.+ +...+..+...|.. .+++++|...
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 99999999876 5677788888887766 7899999999999864 67788888988988 8999999999
Q ss_pred HHHHHhCCCCcCHHhHHHHHHHHHH----cCCHHHHHHHHHHhhhc
Q 006010 495 WTQMLSRGCKPDVVAYSSMIHGLCN----AGSVEEALKLFNEMLCL 536 (664)
Q Consensus 495 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 536 (664)
|++..+.+ +...+..+...|.. .+++++|...|++++..
T Consensus 390 ~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 390 MRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 99999865 56788889999988 89999999999999653
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=2.5e-16 Score=169.64 Aligned_cols=419 Identities=11% Similarity=0.105 Sum_probs=274.7
Q ss_pred ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHH
Q 006010 82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRV--VLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNS 159 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 159 (664)
+|+--...++.|...|++.+|..+++.+.-.+.+ .+...-+.++.+..+. +..+..+...+.- .-+ ...
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-----~~d---~~e 1054 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-----NYD---APD 1054 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-----hcc---HHH
Confidence 3333344455666666666666666666633211 2223333344444443 2233333333321 011 233
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHh
Q 006010 160 VLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK 239 (664)
Q Consensus 160 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (664)
++..+...|.+++|..+|++... .....+.++ -..|++++|.++.++.. +..+|..+..++..
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~--------~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV--------NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC--------HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHh
Confidence 56667777888888888887522 122222222 26677888888877553 46678888888888
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010 240 ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSL 319 (664)
Q Consensus 240 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 319 (664)
.|++++|++.|.+. .|...|..++..+.+.|++++|.+.+...++.. ++....+.++.+|++.+++++...+
T Consensus 1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH
Confidence 88888888888654 366777788888888888888888888776653 2333334577788888777753333
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006010 320 LDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCK 399 (664)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 399 (664)
++ .++...|..+...|...|++++|...|..+ ..|..++.++++.|++++|++.+++..
T Consensus 1190 ----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~----- 1248 (1630)
T 1xi4_A 1190 ----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN----- 1248 (1630)
T ss_pred ----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----
Confidence 22 345566777888888888888888888774 367888888888888888888887762
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010 400 PNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLI 479 (664)
Q Consensus 400 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 479 (664)
+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +.+...|+.+.
T Consensus 1249 -n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELa 1321 (1630)
T 1xi4_A 1249 -STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 1321 (1630)
T ss_pred -CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHH
Confidence 5678888888888888888887766542 3356677788889999999999999998887665 45566777777
Q ss_pred HHHHcC--CChHHHHHHHHHHHhCCCCc------CHHhHHHHHHHHHHcCCHHHHHHH-------------HHHhhhcCC
Q 006010 480 HGLCED--GKLREARMVWTQMLSRGCKP------DVVAYSSMIHGLCNAGSVEEALKL-------------FNEMLCLEP 538 (664)
Q Consensus 480 ~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~~~ 538 (664)
..+++. ++..++.+.|..-.. ++| +...|..+...|.+.|+++.|... |...+
T Consensus 1322 iLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i---- 1395 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII---- 1395 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh----
Confidence 777654 355556666554332 222 456788888889999999988832 22221
Q ss_pred CCCCCHhHHHHHHHHHHHcC---------------ChhHHHHHHH
Q 006010 539 KSQPDVFTYNILLNALCKQS---------------NISHSIDLLN 568 (664)
Q Consensus 539 ~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 568 (664)
....|...|...+..|...+ +.+++.+++.
T Consensus 1396 ~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1396 TKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred cccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 12346777777777777666 6666666665
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=3.7e-16 Score=168.29 Aligned_cols=397 Identities=14% Similarity=0.110 Sum_probs=298.9
Q ss_pred cCCChhHHHHHHhhCCCCCC-CCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 006010 59 AKSEQPFSDEIFNSTPKLGS-YQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEA 137 (664)
Q Consensus 59 ~~~~~~~a~~~f~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 137 (664)
...++..++..++.+...++ |.-+....+.++....+. +........+++-+.. ...++..+...|.+++|
T Consensus 997 ~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAISNELFEEA 1068 (1630)
T ss_pred hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHHhCCCHHHH
Confidence 35667788888888765443 555666667677777666 5566666666555222 33477888899999999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhh
Q 006010 138 IRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFRE 217 (664)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 217 (664)
..+|++. .......+.++. ..+++++|.++++++. +..+|..+..++...|++++|+..|.+
T Consensus 1069 f~IYkKa------~~~~~A~~VLie---~i~nldrAiE~Aervn---------~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1069 FAIFRKF------DVNTSAVQVLIE---HIGNLDRAYEFAERCN---------EPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHc------CCHHHHHHHHHH---HHhhHHHHHHHHHhcC---------CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999986 122333344433 6789999999998762 456888999999999999999999966
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 006010 218 MPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNE 297 (664)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 297 (664)
. .|...|..++..+.+.|++++|.+.+....+.. +++...+.++.+|++.+++++..... . .++.
T Consensus 1131 A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A 1131 A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence 4 377889999999999999999999999887754 44444556899999999988644442 2 3466
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006010 298 VTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGL 377 (664)
Q Consensus 298 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (664)
..|..+...|...|++++|..+|..+ ..|..+..++++.|++++|.+.+.+.. +..+|..+..+|
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHH
Confidence 77778999999999999999999985 379999999999999999999998772 678999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChHH
Q 006010 378 FKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFES--GKGHK 455 (664)
Q Consensus 378 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ 455 (664)
...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+... +.....|+.+...|++. ++..+
T Consensus 1261 ve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred hhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHH
Confidence 9999999998876643 2366677789999999999999999999998765 45566777777777664 34445
Q ss_pred HHHHHHHHHHCCCC------CCHHHHHHHHHHHHcCCChHHHHHH-------------HHHHHhCCCCcCHHhHHHHHHH
Q 006010 456 AVEIWKDMAKNNCV------YNEVCYSVLIHGLCEDGKLREARMV-------------WTQMLSRGCKPDVVAYSSMIHG 516 (664)
Q Consensus 456 a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~~~~p~~~~~~~l~~~ 516 (664)
+.+.|..-.. ++ .+...|..++..|.+.|+++.|... |.+.+.. ..+...|...+..
T Consensus 1335 hlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~F 1410 (1630)
T 1xi4_A 1335 HLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQF 1410 (1630)
T ss_pred HHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHH
Confidence 5555543322 22 2566799999999999999999832 2222222 3466777777777
Q ss_pred HHHcC
Q 006010 517 LCNAG 521 (664)
Q Consensus 517 ~~~~g 521 (664)
|...+
T Consensus 1411 yl~~~ 1415 (1630)
T 1xi4_A 1411 YLEFK 1415 (1630)
T ss_pred HHhhC
Confidence 77444
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.9e-17 Score=173.02 Aligned_cols=218 Identities=12% Similarity=0.035 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006010 350 DGARVLMSMEERKFHVNEYIYSTLISGLFK-------EGKAE-------DAMKLWKQMMEKGCKPNTVVYSALIDGLCRV 415 (664)
Q Consensus 350 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 415 (664)
.+..+|+++....+. +...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 555667766665332 56667766666654 57766 7888888887521233567777788888888
Q ss_pred CChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHcCCChHHHHH
Q 006010 416 GKPDEAEEILFEMINNGCAANA-FTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHG-LCEDGKLREARM 493 (664)
Q Consensus 416 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~ 493 (664)
|++++|..+|+++++.. +.+. ..|..++..+.+.|+.++|.++|++..+.. +.+...|...+.. +...|+.++|..
T Consensus 335 g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp TCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHH
Confidence 88888888888888753 2233 477888888888888888888888888754 2233333322222 335889999999
Q ss_pred HHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCC--CHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010 494 VWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQP--DVFTYNILLNALCKQSNISHSIDLLNSMM 571 (664)
Q Consensus 494 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 571 (664)
+|+..++.. +.+...|..++..+.+.|+.++|..+|++++...+. .| ....|...+......|+.+.+..+.+++.
T Consensus 413 ~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~-~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 413 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL-PPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS-CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999888752 234678888888888899999999999998754332 22 24478888888888899999999999888
Q ss_pred H
Q 006010 572 D 572 (664)
Q Consensus 572 ~ 572 (664)
+
T Consensus 491 ~ 491 (530)
T 2ooe_A 491 T 491 (530)
T ss_dssp H
T ss_pred H
Confidence 7
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=3e-17 Score=171.48 Aligned_cols=416 Identities=10% Similarity=0.079 Sum_probs=273.2
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhccc
Q 006010 106 LYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKH 185 (664)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 185 (664)
+++.++.+ |.+..+|..++.. .+.|++++|..+|+++++. .|.+...|...+..+.+.|++++|..+|++++.
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~--- 74 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM--- 74 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---
Confidence 45566555 4477889888884 7789999999999999775 566788999999999999999999999999987
Q ss_pred CCCCcCHHHHHHHHHHH-HhcCChhHHHH----HHhhcccC-CCC-CCHHHHHHHHHHHHh---------cCChhHHHHH
Q 006010 186 MNILPNTLTFNLVIKTV-CRLGLVDNAIQ----LFREMPVR-NCE-PDIYTYCTLMDGLCK---------ENRLDEAVLL 249 (664)
Q Consensus 186 ~~~~~~~~~~~~ll~~~-~~~g~~~~A~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~g~~~~a~~~ 249 (664)
..|+...|...+... ...|+.+.|.+ +|+..... |.. ++...|...+....+ .|+++.|..+
T Consensus 75 --~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (530)
T 2ooe_A 75 --KVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 152 (530)
T ss_dssp --TCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred --cCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence 346777777766533 34677777665 66665432 433 356778877776654 6788899999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHH-------------hcCChhHHHHHHHHHH------HcC---CCCC--------HHH
Q 006010 250 LDEMQVDGCFPTPVTFNVLINGLC-------------KNGELGRAAKLVDNMF------LKG---CLPN--------EVT 299 (664)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~li~~~~-------------~~g~~~~a~~~~~~~~------~~g---~~p~--------~~~ 299 (664)
|++............|........ ..+++..|..++.... +.. +.|+ ...
T Consensus 153 y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 153 YQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 998887311111234443333211 2345666666665521 111 2333 134
Q ss_pred HHHHHHHHHhc----CCh----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-------cCChh-------HHHHHHHH
Q 006010 300 YNTLIHGLCLK----GNL----DKAVSLLDRMVASKCMPNEVTYGTIINGLVK-------LGRAV-------DGARVLMS 357 (664)
Q Consensus 300 ~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~ 357 (664)
|...+...... ++. +.+..+|++++... +.++..|..++..+.+ .|+++ +|..++++
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 44444332221 122 35667777777652 4466677777776664 57766 77778877
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 006010 358 MEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPN--TVVYSALIDGLCRVGKPDEAEEILFEMINNGCAA 435 (664)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 435 (664)
..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|..+|+++++.. +.
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~ 388 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RT 388 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TC
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 775222335677777777777888888888888887775 333 2467777777777788888888888887753 22
Q ss_pred CHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC-CcC--HHhHH
Q 006010 436 NAFTYSSLMKG-FFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGC-KPD--VVAYS 511 (664)
Q Consensus 436 ~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~~ 511 (664)
+...+...+.. +...|+.++|..+|+...+.. +.+...|..++..+...|+.++|..+|++.+..+. .|+ ...|.
T Consensus 389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~ 467 (530)
T 2ooe_A 389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 467 (530)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHH
T ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHH
Confidence 23333222222 335778888888888777654 44567777777777788888888888888776531 222 34676
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhh
Q 006010 512 SMIHGLCNAGSVEEALKLFNEMLC 535 (664)
Q Consensus 512 ~l~~~~~~~g~~~~A~~~~~~~~~ 535 (664)
..+......|+.+.+..++.++++
T Consensus 468 ~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 468 RFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777888888888877754
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=2e-18 Score=168.96 Aligned_cols=295 Identities=12% Similarity=-0.039 Sum_probs=187.8
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006010 329 MPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSAL 408 (664)
Q Consensus 329 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 408 (664)
+.+...+..++..+...|++++|.++++++.+..+. +...+..++.++...|++++|...++++.+... .+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHH
Confidence 344555566666666666666666666666655433 344555556666666777777777777666532 245566666
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 006010 409 IDGLCRVG-KPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGK 487 (664)
Q Consensus 409 i~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 487 (664)
...+...| ++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 66677777 6777777777776654 4455666777777777777777777777776654 3345556667777777777
Q ss_pred hHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCC------CCCCHhHHHHHHHHHHHcCChh
Q 006010 488 LREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPK------SQPDVFTYNILLNALCKQSNIS 561 (664)
Q Consensus 488 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~ 561 (664)
+++|...++++.+.. +.+..++..++..+...|++++|...+++++...+. ...+...|..+..++...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 777777777777653 334566777777777777777777777777543211 0223456777777777778888
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHH
Q 006010 562 HSIDLLNSMMDRGCDPDL-VTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWER 640 (664)
Q Consensus 562 ~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 640 (664)
+|...++++.+. .|+. ..+..+. .++.+.|++++|.+.++++.+. .+.++..+..
T Consensus 254 ~A~~~~~~a~~~--~~~~~~~~~~la---------------------~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~ 309 (330)
T 3hym_B 254 EALDYHRQALVL--IPQNASTYSAIG---------------------YIHSLMGNFENAVDYFHTALGL-RRDDTFSVTM 309 (330)
T ss_dssp HHHHHHHHHHHH--STTCSHHHHHHH---------------------HHHHHHTCHHHHHHHHHTTTTT-CSCCHHHHHH
T ss_pred HHHHHHHHHHhh--CccchHHHHHHH---------------------HHHHHhccHHHHHHHHHHHHcc-CCCchHHHHH
Confidence 888888777763 3432 2232222 2377778888888888777663 2335667777
Q ss_pred HHHHh-cccchHH
Q 006010 641 VVQEL-CRPKRIQ 652 (664)
Q Consensus 641 l~~~~-~~~g~~~ 652 (664)
++.++ ...|+.+
T Consensus 310 l~~~~~~~~g~~~ 322 (330)
T 3hym_B 310 LGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHTTTTC--
T ss_pred HHHHHHHHhCchh
Confidence 77766 4555543
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.5e-18 Score=168.21 Aligned_cols=274 Identities=12% Similarity=0.041 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006010 297 EVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISG 376 (664)
Q Consensus 297 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (664)
...+..+...+...|++++|.++++++.+.. +.+...+..++..+...|++++|...+.++.+..+. +...+..+...
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 99 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGCY 99 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHH
Confidence 3344445555555555555555555555442 223344444555555555555555555555554322 34455555555
Q ss_pred HHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006010 377 LFKEG-KAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHK 455 (664)
Q Consensus 377 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 455 (664)
+...| ++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 56666 56666666666555432 234455556666666666666666666666543 3334455556666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC--------CCcCHHhHHHHHHHHHHcCCHHHHH
Q 006010 456 AVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRG--------CKPDVVAYSSMIHGLCNAGSVEEAL 527 (664)
Q Consensus 456 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~ 527 (664)
|.+.++.+.+.. +.+...+..+...+...|++++|...++++.+.. .+....++..++.++...|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 666666666554 3455566666666666677777776666665431 0222456667777777777777777
Q ss_pred HHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006010 528 KLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV 580 (664)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 580 (664)
..+++++...+. +...|..+..++.+.|++++|...++++.+ +.|+..
T Consensus 257 ~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~ 304 (330)
T 3hym_B 257 DYHRQALVLIPQ---NASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDT 304 (330)
T ss_dssp HHHHHHHHHSTT---CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCH
T ss_pred HHHHHHHhhCcc---chHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCch
Confidence 777777654433 455667777777777777777777777765 455443
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=5.6e-18 Score=168.55 Aligned_cols=309 Identities=14% Similarity=0.007 Sum_probs=187.0
Q ss_pred HHhcCChhHHHH-HHHHHHhCCCC-C--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006010 237 LCKENRLDEAVL-LLDEMQVDGCF-P--TPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGN 312 (664)
Q Consensus 237 ~~~~g~~~~a~~-~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 312 (664)
+.-.|++++|.. .+++....... | +...+..+...+...|++++|...|+++.... +.+..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334455555555 44443322100 0 12334445555555555555555555555442 1244455555555555555
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006010 313 LDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQ 392 (664)
Q Consensus 313 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 392 (664)
+++|...++++.+.. +.+..++..+...+...|++++|.+.++++....+. +...+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence 555555555555432 224444444555555555555555555554443221 11111000000 00
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 006010 393 MMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAA--NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVY 470 (664)
Q Consensus 393 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 470 (664)
. ..+ ...+.. +..+...|++++|...++++.+.. +. +..++..+...|...|++++|...++++.+.. +.
T Consensus 178 ~----~~~-~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 G----AGL-GPSKRI-LGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp -------------CT-THHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred h----hcc-cHHHHH-HHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 000 000112 223337889999999999998864 33 57888999999999999999999999988865 55
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCC--------CC
Q 006010 471 NEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKS--------QP 542 (664)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~ 542 (664)
+...+..+...+...|++++|...++++++.. +.+..++..++.+|.+.|++++|...|++++...+.. ..
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 67889999999999999999999999998753 3457789999999999999999999999997655442 11
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010 543 DVFTYNILLNALCKQSNISHSIDLLNSMM 571 (664)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 571 (664)
....|..+..+|...|++++|..++++.+
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 26789999999999999999999887544
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=5.2e-18 Score=168.79 Aligned_cols=304 Identities=11% Similarity=-0.016 Sum_probs=128.0
Q ss_pred CCHhHHHH-HHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006010 168 GLYHRALE-FYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEA 246 (664)
Q Consensus 168 ~~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 246 (664)
|++++|.. .|++.....+.....+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45555555 55544332111111122334455555555555555555555555443 33455555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006010 247 VLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVAS 326 (664)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 326 (664)
...++++.+.. +.+..++..+...+...|++++|...++++...... +...+..+.. ... ..
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~-------~~~-------~~-- 179 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEE-------GAG-------GA-- 179 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-------------------------
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH-------Hhh-------hh--
Confidence 55555555432 224455555555555555555555555555544211 1111110000 000 00
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 006010 327 KCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHV-NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVY 405 (664)
Q Consensus 327 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 405 (664)
.+ ...+..+. .+...|++++|...++++.+..+.. +..++..+...+.+.|++++|+..++++.+... .+..++
T Consensus 180 --~~-~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~ 254 (368)
T 1fch_A 180 --GL-GPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLW 254 (368)
T ss_dssp ---------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred --cc-cHHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHH
Confidence 00 00000111 1113444444444444444332211 234444444444444444444444444444321 133444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----------CCHHHH
Q 006010 406 SALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCV----------YNEVCY 475 (664)
Q Consensus 406 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~ 475 (664)
..+...+...|++++|...++++++.. +.+...+..+...|.+.|++++|...++.+.+.... ....+|
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 444444445555555555555444432 333444445555555555555555555444432200 013455
Q ss_pred HHHHHHHHcCCChHHHHHHHH
Q 006010 476 SVLIHGLCEDGKLREARMVWT 496 (664)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~ 496 (664)
..+..++...|++++|..++.
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHhCChHhHHHhHH
Confidence 555555555555555555544
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.1e-16 Score=165.16 Aligned_cols=381 Identities=13% Similarity=-0.019 Sum_probs=213.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----C
Q 006010 226 DIYTYCTLMDGLCKENRLDEAVLLLDEMQVD--------GCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK-----G 292 (664)
Q Consensus 226 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----g 292 (664)
....|+.|...+...|++++|++.|++..+. .-+....+|+.+...|...|++++|...+++.... +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567888888888999999999988876542 11234567888888888889999998888877542 1
Q ss_pred C-C-CCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCChhhHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCC
Q 006010 293 C-L-PNEVTYNTLIHGLCL--KGNLDKAVSLLDRMVASKCMPNEVTYGTIING---LVKLGRAVDGARVLMSMEERKFHV 365 (664)
Q Consensus 293 ~-~-p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~ 365 (664)
. . ....++.....++.. .+++++|.+.|++..+.. +-++..+..+... +...++.++|++.+++..+..+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 0 1 123455555444443 456888888888887753 2244444444443 33456777788888777776543
Q ss_pred CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006010 366 NEYIYSTLISGLFK----EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYS 441 (664)
Q Consensus 366 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 441 (664)
+...+..+...+.. .+++++|...+++...... .+..++..+...+...|++++|...++++.+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 55555555544443 4567778888887776643 356677777788888888888888888887764 45566666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcC
Q 006010 442 SLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAG 521 (664)
Q Consensus 442 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 521 (664)
.+...|...+....+... . .........+..++|...+++..+.. +.+..++..+...+...|
T Consensus 286 ~lg~~y~~~~~~~~~~~~----------~------~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRE----------N------GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhHHH----------H------HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 666665432111000000 0 00000111223566777777776642 223456777778888888
Q ss_pred CHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHH-HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhh----hhccCC
Q 006010 522 SVEEALKLFNEMLCLEPKSQPDVFTYNILLNA-LCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALK----EKLEAP 596 (664)
Q Consensus 522 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~----~~~~~~ 596 (664)
++++|+..|+++++..+........+..+... ....|++++|+..+++.++ +.|+.......+..+. ......
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~~~~l~~~~~~~l~~~ 426 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKMKDKLQKIAKMRLSKN 426 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888888764332210001122233322 3456778888888888776 5665443322222211 000111
Q ss_pred CCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 597 QDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 597 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
......+..||.+|...|++++|.+.|+++++.
T Consensus 427 p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 427 GADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp C-CTTHHHHHHHHHHHHHHCC------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 111223334455555566666666666665553
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=5.8e-18 Score=168.19 Aligned_cols=264 Identities=11% Similarity=0.060 Sum_probs=173.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006010 370 YSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFE 449 (664)
Q Consensus 370 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 449 (664)
+..+...+.+.|++++|+..|+++.+... .+..++..+...+...|++++|...|+++++.. +.+...+..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 44455555555555555555555554432 244555555555555555555555555555543 3345555556666666
Q ss_pred cCChHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-cCHHhHHHHHHHHH
Q 006010 450 SGKGHKAVEIWKDMAKNNCVY----------NEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCK-PDVVAYSSMIHGLC 518 (664)
Q Consensus 450 ~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~ 518 (664)
.|++++|.+.++++.+.. +. ....+..+...+...|++++|...++++++.... ++..++..++..+.
T Consensus 146 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 666666666666555532 11 1223344577888889999999999998876321 15778888999999
Q ss_pred HcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHhhhhhccCCC
Q 006010 519 NAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL-VTCNIFLTALKEKLEAPQ 597 (664)
Q Consensus 519 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~ 597 (664)
..|++++|+..|++++...+. +...|..+..+|...|++++|+..++++.+ ..|+. ..+..+...
T Consensus 225 ~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~--------- 290 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRPE---DYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGIS--------- 290 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH---------
T ss_pred HCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHH---------
Confidence 999999999999999765554 677889999999999999999999999987 45553 334333333
Q ss_pred CchhhhHHHHHHhhhcCCcchHHHHHHHHHHcC--C-C--------CChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 598 DGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKF--L-S--------PQTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 598 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
|.+.|++++|...++++.+.. . . .+..+|..+..++...|+.+.|.+...+.+
T Consensus 291 ------------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 291 ------------CINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp ------------HHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred ------------HHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 889999999999999988751 0 0 136889999999999999999988776644
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=2.4e-17 Score=163.73 Aligned_cols=275 Identities=14% Similarity=0.053 Sum_probs=172.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 006010 264 TFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLV 343 (664)
Q Consensus 264 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 343 (664)
.+..+...+.+.|++++|+..|+++..... .+..++..+...+...|++++|...|+++.+.. +.+...+..+...|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 355555555555566666655555554422 244455555555555555555555555555432 223444444444455
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006010 344 KLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEE 423 (664)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 423 (664)
..|++++|...++++.+..+. +...+..+. .....+..+...+...|++++|..
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A~~ 198 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPK-YKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEGVKE 198 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHH-HHCC--------------------------------------------CCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcc-chHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHHHHH
Confidence 555555555444444432110 000000000 012233445667778888888888
Q ss_pred HHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 006010 424 ILFEMINNGCAA--NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSR 501 (664)
Q Consensus 424 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (664)
.++++.+.. +. +..++..+...|...|++++|.+.++++.+.. +.+..+|..+..++...|++++|...|+++++.
T Consensus 199 ~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 199 LYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp HHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888888764 33 67788888888888889999988888888765 556788888999999999999999999988875
Q ss_pred CCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCC---------CHhHHHHHHHHHHHcCChhHHHHHHHH
Q 006010 502 GCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQP---------DVFTYNILLNALCKQSNISHSIDLLNS 569 (664)
Q Consensus 502 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 569 (664)
. +.+..++..++.+|...|++++|...|++++...+.... +...|..+..++...|+.+.+..+.++
T Consensus 277 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 277 Q-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred C-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 3 334778888999999999999999999998765543221 356788999999999999888877665
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.4e-16 Score=154.08 Aligned_cols=240 Identities=14% Similarity=0.088 Sum_probs=87.3
Q ss_pred hCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 006010 95 NSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRAL 174 (664)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 174 (664)
+.|++++|.+.++++.. +.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 55667777777777721 237777888888888888888877542 45557777777777778888888
Q ss_pred HHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010 175 EFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQ 254 (664)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 254 (664)
.+++...+ ..++..+...++.+|.+.|+++++.++++. |+..+|..+...|...|++++|...|..+
T Consensus 82 ~yl~~ark-----~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 82 KYLQMARK-----KARESYVETELIFALAKTNRLAELEEFING-------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp --------------------------------CHHHHTTTTTC-------C----------------CTTTHHHHHHHT-
T ss_pred HHHHHHHH-----hCccchhHHHHHHHHHHhCCHHHHHHHHcC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 86666654 124456677777778888887777766642 45567777778888888888888877765
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh
Q 006010 255 VDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVT 334 (664)
Q Consensus 255 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 334 (664)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +..++.-
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~ 209 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADE 209 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhh
Confidence 25777777788888888887777776 1667777777788878887777544333 2223334
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006010 335 YGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKE 380 (664)
Q Consensus 335 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (664)
...++..|.+.|++++|..+++...... +.....|+.+..+|++-
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc
Confidence 4556677777777777777777776554 33556666666666544
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=4.3e-17 Score=159.13 Aligned_cols=260 Identities=13% Similarity=0.027 Sum_probs=171.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006010 371 STLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFES 450 (664)
Q Consensus 371 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 450 (664)
..+...+...|++++|+.+++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 3344444444555555555554444321 134444444445555555555555555554432 33444555555555555
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHH
Q 006010 451 GKGHKAVEIWKDMAKNNCVYNEVCYSVL--------------IH-GLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIH 515 (664)
Q Consensus 451 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 515 (664)
|++++|.+.++.+.+.. +.+...+..+ .. .+...|++++|...++++.+.. +.+..++..++.
T Consensus 103 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 55555555555555433 1111122211 22 3667788999999999988763 336778889999
Q ss_pred HHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHhhhhhcc
Q 006010 516 GLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPD-LVTCNIFLTALKEKLE 594 (664)
Q Consensus 516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~ 594 (664)
.+...|++++|...+++++...+. +...|..+...+...|++++|...++++.+ ..|+ ...+..+..
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~------- 248 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPD---DAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAV------- 248 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH-------
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHH-------
Confidence 999999999999999999765443 677888999999999999999999999987 3454 333433333
Q ss_pred CCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCC-------------ChHHHHHHHHHhcccchHHHHHHHHHhh
Q 006010 595 APQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSP-------------QTSTWERVVQELCRPKRIQAAINKCWSN 661 (664)
Q Consensus 595 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 661 (664)
++...|++++|.+.++++.+. .| ++..|..++.++.+.|+.++|...+.+.
T Consensus 249 --------------~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 249 --------------SYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp --------------HHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred --------------HHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 389999999999999999875 33 4688999999999999999999988765
Q ss_pred h
Q 006010 662 L 662 (664)
Q Consensus 662 l 662 (664)
+
T Consensus 313 l 313 (327)
T 3cv0_A 313 V 313 (327)
T ss_dssp S
T ss_pred H
Confidence 4
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.3e-15 Score=157.07 Aligned_cols=364 Identities=11% Similarity=-0.047 Sum_probs=252.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcccC--------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C
Q 006010 191 NTLTFNLVIKTVCRLGLVDNAIQLFREMPVR--------NCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVD-----G 257 (664)
Q Consensus 191 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~ 257 (664)
....||.+...+...|++++|++.|++..+. .-+....+|..+..+|...|++++|...+++.... +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4568999999999999999999999987532 11334678999999999999999999999987652 1
Q ss_pred --CCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHCCCCC
Q 006010 258 --CFPTPVTFNVLINGLCK--NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHG---LCLKGNLDKAVSLLDRMVASKCMP 330 (664)
Q Consensus 258 --~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~ 330 (664)
......++..+..++.. .+++++|+..|++.....+. +...+..+..+ +...++.++|++.+++..+.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 11234566666555555 45799999999999887432 45555555444 445688899999999988764 34
Q ss_pred ChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 006010 331 NEVTYGTIINGLVK----LGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYS 406 (664)
Q Consensus 331 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 406 (664)
+...+..+...+.. .++.++|.+.+++.....+. +...+..+...|...|++++|+..+++..+..+. +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 55666666555544 46788999999998887654 7788899999999999999999999999987433 566777
Q ss_pred HHHHHHHhc-------------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006010 407 ALIDGLCRV-------------------GKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNN 467 (664)
Q Consensus 407 ~li~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 467 (664)
.+..+|... +..+.|...++.+.+.. +.+...+..+...|...|++++|++.|++..+..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 777776532 23566777777777654 4456677788888999999999999999888765
Q ss_pred CCCCHH--HHHHHHH-HHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCH
Q 006010 468 CVYNEV--CYSVLIH-GLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDV 544 (664)
Q Consensus 468 ~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 544 (664)
..+... .+..+.. .....|+.++|+..|++.++. .|+..... +..+.+.+++++.+..+|. +.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~~~p~---~~ 430 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLSKNGA---DS 430 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHHHCC----CT
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHHhCCC---CH
Confidence 332221 2222322 234678899999999888874 45533222 2234556667776655544 67
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006010 545 FTYNILLNALCKQSNISHSIDLLNSMMDR 573 (664)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 573 (664)
.+|..+..+|...|++++|++.|++.++.
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp THHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 78999999999999999999999999974
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=2.4e-16 Score=152.36 Aligned_cols=283 Identities=11% Similarity=0.081 Sum_probs=109.3
Q ss_pred hcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006010 204 RLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAK 283 (664)
Q Consensus 204 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 283 (664)
+.|++++|.++++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4566677777776662 2236667777777777777777777542 355566677777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006010 284 LVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKF 363 (664)
Q Consensus 284 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 363 (664)
.++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 66555543 3345566667777777777777666653 245567777777777777777777777755
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006010 364 HVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSL 443 (664)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 443 (664)
..|..++.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|......+ ...+.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 25677777777777777777777766 15677777777777777777775444332 2233444457
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHhCCCCc------CHHhHHHHHH
Q 006010 444 MKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCED--GKLREARMVWTQMLSRGCKP------DVVAYSSMIH 515 (664)
Q Consensus 444 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~ 515 (664)
+..|.+.|.+++|..+++...... +.....|+.+...|++- ++..+.++.|..-+ +++| +...|..+..
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777655 55566677776666654 23334444433211 2222 3456777777
Q ss_pred HHHHcCCHHHHHHHH
Q 006010 516 GLCNAGSVEEALKLF 530 (664)
Q Consensus 516 ~~~~~g~~~~A~~~~ 530 (664)
.|...++++.|....
T Consensus 291 ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 291 LYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHhhchHHHHHHHH
Confidence 777888888777643
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=2e-16 Score=154.35 Aligned_cols=233 Identities=10% Similarity=-0.077 Sum_probs=148.1
Q ss_pred ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 006010 82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVL 161 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 161 (664)
+...+......+...|++++|..+|+++.+..+ .+..++..++.++...|++++|++.|+++++. .+.+..++..++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHH
Confidence 345678888999999999999999999998764 47778889999999999999999999998775 456788899999
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcccCCCCcCH-HHHHHH--------------HH-HHHhcCChhHHHHHHhhcccCCCCC
Q 006010 162 NVIIQEGLYHRALEFYNHIVNAKHMNILPNT-LTFNLV--------------IK-TVCRLGLVDNAIQLFREMPVRNCEP 225 (664)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~l--------------l~-~~~~~g~~~~A~~~~~~~~~~~~~~ 225 (664)
..+...|++++|...++++.+.. |+. ..+..+ .. .+...|++++|.+.++++.+.. +.
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~ 170 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQ-----PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PN 170 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTS-----TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-----CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CC
Confidence 99999999999999999998732 222 222222 11 2444455555555555554443 33
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006010 226 DIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIH 305 (664)
Q Consensus 226 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 305 (664)
+...+..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++++.... +.+..++..+..
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 248 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAV 248 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 44555555555555555555555555554432 2234445555555555555555555555554432 113444444555
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 006010 306 GLCLKGNLDKAVSLLDRMVA 325 (664)
Q Consensus 306 ~~~~~g~~~~a~~~~~~~~~ 325 (664)
.+...|++++|.+.++++.+
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 55555555555555555443
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=8.9e-16 Score=145.84 Aligned_cols=255 Identities=13% Similarity=0.088 Sum_probs=159.4
Q ss_pred HHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCC
Q 006010 90 IQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGL 169 (664)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (664)
++-....|+++.|+..++.....++.........+.++|...|++++|+..++.. .+|+..++..++..+...++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCc
Confidence 3445566777777777666554443322345556677777777777777655431 34556667777777777777
Q ss_pred HhHHHHHHHHHHhcccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006010 170 YHRALEFYNHIVNAKHMNILP-NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVL 248 (664)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 248 (664)
.++|++.++++.. .+..| +...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+
T Consensus 81 ~~~A~~~l~~ll~---~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 81 RDAIVAELDREMS---RSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp HHHHHHHHHHHHH---SCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHh---cccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 7777777777765 33333 344555566677777777777777766 3456677777777777777777777
Q ss_pred HHHHHHhCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010 249 LLDEMQVDGCFPTPVTF---NVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVA 325 (664)
Q Consensus 249 ~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (664)
.++++.+.. |+.... ..++..+...|++++|..+|+++.... +.+...++.+..++...|++++|...++++++
T Consensus 152 ~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777776653 332211 122233334467777777777776652 34666667777777777777777777777666
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHHcC
Q 006010 326 SKCMPNEVTYGTIINGLVKLGRAVD-GARVLMSMEERK 362 (664)
Q Consensus 326 ~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~ 362 (664)
.. +-++.++..++..+...|+.++ +.++++++.+..
T Consensus 229 ~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 229 KD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred hC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 53 3355666666666666666654 456666666553
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.9e-15 Score=143.56 Aligned_cols=149 Identities=11% Similarity=0.039 Sum_probs=74.6
Q ss_pred HHHHcCCHhHHHHHHHHHHhcccCCCCcCH--HHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhc
Q 006010 163 VIIQEGLYHRALEFYNHIVNAKHMNILPNT--LTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKE 240 (664)
Q Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (664)
.....|+++.|+..++.+.. ..|+. .....+..+|...|+++.|+..++.. -+|+..++..+...+...
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~-----~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKP-----SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCC-----CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHhccc-----CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCC
Confidence 33445555555555555432 22322 23334455555555555555544331 134444555555555555
Q ss_pred CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010 241 NRLDEAVLLLDEMQVDGCFP-TPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSL 319 (664)
Q Consensus 241 g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 319 (664)
|+.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 55555555555555443222 334444444555555555555555554 23444555555555555555555555
Q ss_pred HHHHHHC
Q 006010 320 LDRMVAS 326 (664)
Q Consensus 320 ~~~~~~~ 326 (664)
++++.+.
T Consensus 153 l~~~~~~ 159 (291)
T 3mkr_A 153 LKKMQDQ 159 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 5555544
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=4.5e-15 Score=150.71 Aligned_cols=313 Identities=12% Similarity=0.022 Sum_probs=135.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006010 234 MDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGEL---GRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLK 310 (664)
Q Consensus 234 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 310 (664)
...+.+.|++++|.++|++..+.| ++..+..|...|...|+. ++|...|++..+. +...+..+...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 334444455555555555544433 222233333334444444 4555555554422 233333333323333
Q ss_pred C-----ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006010 311 G-----NLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRA---VDGARVLMSMEERKFHVNEYIYSTLISGLFKEGK 382 (664)
Q Consensus 311 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (664)
+ +.++|...|++..+.| +...+..+...|...+.. .++.+.+....+.| +......+...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 2 4455555555555543 222444444444443322 22333333333332 22344444555555554
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChHH
Q 006010 383 AEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVG---KPDEAEEILFEMINNGCAANAFTYSSLMKGFFES----GKGHK 455 (664)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ 455 (664)
++++......+.+.-...++..+..+...|...| +.++|...|++..+.| +++...+..+...|... +++++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 4333333222222111112235555555555555 5666666666666655 34444444455555333 45666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH-H--HcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcC-----CHHHHH
Q 006010 456 AVEIWKDMAKNNCVYNEVCYSVLIHG-L--CEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAG-----SVEEAL 527 (664)
Q Consensus 456 a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~ 527 (664)
|.+.|+... +.+...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|.
T Consensus 236 A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 236 AQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 666666655 2334444444444 2 34566666666666666544 3445555555554 33 666666
Q ss_pred HHHHHhhhcCCCCCCCHhHHHHHHHHHHH----cCChhHHHHHHHHHHHCC
Q 006010 528 KLFNEMLCLEPKSQPDVFTYNILLNALCK----QSNISHSIDLLNSMMDRG 574 (664)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 574 (664)
.+|+++ . ++ +...+..+...|.. ..++++|..+|++..+.|
T Consensus 308 ~~~~~A--a-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 308 AHFEKA--V-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHTT--T-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHH--h-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 666665 2 22 44455555555544 226666666666666544
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=5.9e-17 Score=169.05 Aligned_cols=151 Identities=12% Similarity=0.095 Sum_probs=117.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcc---cCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 006010 191 NTLTFNLVIKTVCRLGLVDNAIQLFREMP---VRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNV 267 (664)
Q Consensus 191 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 267 (664)
-..+|+++|.+||+.|++++|.++|++|. ..|+.||+.+||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 44589999999999999999999997764 457889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------hhhHHHHHH
Q 006010 268 LINGLCKNGEL-GRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPN------EVTYGTIIN 340 (664)
Q Consensus 268 li~~~~~~g~~-~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~ 340 (664)
+|.++++.|+. ++|.++|++|...|+.||..+|+.++....+. .+++..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999998874 78889999999999999999999887655433 333334333 2234443 445556666
Q ss_pred HHHhcC
Q 006010 341 GLVKLG 346 (664)
Q Consensus 341 ~~~~~~ 346 (664)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666544
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=3.9e-15 Score=135.06 Aligned_cols=198 Identities=11% Similarity=0.028 Sum_probs=118.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHH
Q 006010 434 AANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSM 513 (664)
Q Consensus 434 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 513 (664)
|++...+..+...+...|++++|...+++..+.. |.+...+..+...+...|++++|...+++.++.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3444555556666666666666666666666554 4455566666666666666666666666666542 2234556666
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010 514 IHGLCNA-----------GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTC 582 (664)
Q Consensus 514 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 582 (664)
..++... |++++|+..|++++...|. +...|..+..++...|++++|+..++++++.. .+...+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR---YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 6666666 7777777777777665554 56667777777777777777777777777654 344444
Q ss_pred HHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHh
Q 006010 583 NIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWS 660 (664)
Q Consensus 583 ~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 660 (664)
..+... +...|++++|...++++.+. .+.++..+..++..+...|++++|+..|.+
T Consensus 155 ~~la~~---------------------~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 155 SALAEL---------------------YLSMGRLDEALAQYAKALEQ-APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHH---------------------HHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHH---------------------HHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444333 77777777777777777764 244567777777777777888777777655
No 38
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.68 E-value=4.8e-12 Score=132.57 Aligned_cols=233 Identities=12% Similarity=0.019 Sum_probs=152.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006010 352 ARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAM-KLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMIN 430 (664)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 430 (664)
..+|+++....+. ....|...+..+...|+.++|. .+|++.... ++.+...|...+...-+.|+++.|..+|+.+++
T Consensus 329 ~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 329 TYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4456665554322 5666666666666677777775 777777654 233444555666666677777777777777765
Q ss_pred CC----------CCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC-CCh
Q 006010 431 NG----------CAA-----------NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCED-GKL 488 (664)
Q Consensus 431 ~~----------~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 488 (664)
.. .+. ...+|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence 31 111 13467777777778888889999998888751122334444333333343 458
Q ss_pred HHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHH
Q 006010 489 REARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLN 568 (664)
Q Consensus 489 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 568 (664)
+.|.++|+..++. .+-+...|...+......|+.+.|..+|++++...+...-....|..++..-.+.|+.+.+..+.+
T Consensus 487 e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 487 KTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8999999988875 333556677788878888999999999999853222111234578888888888899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHhh
Q 006010 569 SMMDRGCDPDLVTCNIFLTAL 589 (664)
Q Consensus 569 ~~~~~~~~p~~~~~~~ll~~~ 589 (664)
++.+ ..|+......+..-+
T Consensus 566 R~~~--~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 566 RFFE--KFPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHH--HSTTCCHHHHHHHHT
T ss_pred HHHH--hCCCCcHHHHHHHHh
Confidence 9987 355555555555554
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=7.2e-17 Score=168.42 Aligned_cols=119 Identities=11% Similarity=0.077 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006010 226 DIYTYCTLMDGLCKENRLDEAVLLLDEMQV---DGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNT 302 (664)
Q Consensus 226 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 302 (664)
-..+|++||++||+.|++++|.++|++|.+ .|+.||.+|||+||++|++.|++++|.++|++|...|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 457899999999999999999999988764 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 006010 303 LIHGLCLKGNL-DKAVSLLDRMVASKCMPNEVTYGTIINGLVK 344 (664)
Q Consensus 303 l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 344 (664)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 99999999985 7899999999999999999999988865544
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.1e-14 Score=134.56 Aligned_cols=222 Identities=14% Similarity=0.103 Sum_probs=135.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CC----HHHHHHH
Q 006010 335 YGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCK--PN----TVVYSAL 408 (664)
Q Consensus 335 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 408 (664)
+..+...+...|++++|...++++.+.. .+...+..+..++...|++++|+..++++.+.... ++ ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3344444444444444444444444443 23444444555555555555555555554432111 11 3455555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh
Q 006010 409 IDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKL 488 (664)
Q Consensus 409 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 488 (664)
...+...|++++|...++++.+.. |+. ..+...|++++|.+.++.+.... +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 566666666666666666665542 222 23445566677777777766644 33455667777777777888
Q ss_pred HHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHH
Q 006010 489 REARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLN 568 (664)
Q Consensus 489 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 568 (664)
++|...++++++.. +.+..++..++.++...|++++|...+++++...+. +...|..+..++.+.|++++|...++
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---FVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH---HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88888887777653 335667777888888888888888888888655443 56677777888888888888888888
Q ss_pred HHHH
Q 006010 569 SMMD 572 (664)
Q Consensus 569 ~~~~ 572 (664)
++.+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=1.4e-14 Score=147.13 Aligned_cols=346 Identities=11% Similarity=0.042 Sum_probs=147.1
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCCh---hHHHHHHhhcccCCCCCCHHHHHHHHHH
Q 006010 160 VLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLV---DNAIQLFREMPVRNCEPDIYTYCTLMDG 236 (664)
Q Consensus 160 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (664)
+...+.+.|++++|..+|+++.+ .+ +...+..+...|...|+. ++|.+.|+...+. ++..+..+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~---~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAE---LG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HT---CCTGGGTCC--------------------------------CHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH---CC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence 55566666666777776666655 22 223334444455555555 5666666665532 33444445443
Q ss_pred HHhcC-----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006010 237 LCKEN-----RLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELG---RAAKLVDNMFLKGCLPNEVTYNTLIHGLC 308 (664)
Q Consensus 237 ~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~g~~p~~~~~~~l~~~~~ 308 (664)
+...+ ++++|+..|++....|. ...+..|...|...+..+ ++.+.+......| +...+..+...|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYR 152 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 44433 45566666666655442 124444555554443322 2223333332222 2223334444444
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHH
Q 006010 309 LKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEG---KAED 385 (664)
Q Consensus 309 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~ 385 (664)
..+.++++......+.+.-...++. .+..+...|.+.| +.++
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~~~~-----------------------------------a~~~Lg~~~~~~g~~~~~~~ 197 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNTTDI-----------------------------------CYVELATVYQKKQQPEQQAE 197 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTTCTT-----------------------------------HHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHcCCHH-----------------------------------HHHHHHHHHHHcCCcccHHH
Confidence 4443333222222111111111222 4444444444444 4455
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChHHHHH
Q 006010 386 AMKLWKQMMEKGCKPNTVVYSALIDGLCRV----GKPDEAEEILFEMINNGCAANAFTYSSLMKG-F--FESGKGHKAVE 458 (664)
Q Consensus 386 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~ 458 (664)
|+..|++..+.|. ++...+..+...|... +++++|...|++.. . -+...+..+... | ...+++++|.+
T Consensus 198 A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~ 272 (452)
T 3e4b_A 198 LLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMK 272 (452)
T ss_dssp HHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 5555555544432 1333223333333322 45555555555554 2 233334444443 2 33455555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHH----cCCHHHHHHH
Q 006010 459 IWKDMAKNNCVYNEVCYSVLIHGLCEDG-----KLREARMVWTQMLSRGCKPDVVAYSSMIHGLCN----AGSVEEALKL 529 (664)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 529 (664)
.|++..+.+ +...+..+...|. .| ++++|...|++.. .| +...+..+...|.. ..++++|..+
T Consensus 273 ~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 344 (452)
T 3e4b_A 273 YLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDH 344 (452)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 555555543 3444444444444 23 5666666666555 22 34445555555544 2366666666
Q ss_pred HHHhhhcCCCCCCCHhHHHHHHHHHHH----cCChhHHHHHHHHHHHCC
Q 006010 530 FNEMLCLEPKSQPDVFTYNILLNALCK----QSNISHSIDLLNSMMDRG 574 (664)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 574 (664)
|+++ .+.+ +......|...|.. ..++++|..++++..+.|
T Consensus 345 ~~~A--a~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 345 LLTA--ARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHH--HTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHH--HhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 6666 3333 33344445555442 336666666666666544
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=1e-14 Score=132.26 Aligned_cols=198 Identities=16% Similarity=0.078 Sum_probs=127.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010 366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMK 445 (664)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 445 (664)
+...+..+...+.+.|++++|+..|++..+... .+...+..+...+.+.|++++|...++++++.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 344555555666666666666666666655432 245555566666666666666666666666553 445556666666
Q ss_pred HHHhc-----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHH
Q 006010 446 GFFES-----------GKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMI 514 (664)
Q Consensus 446 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 514 (664)
.+... |++++|+..+++..+.. |.+...+..+...+...|++++|+..|+++++.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 66666 88888888888887765 4566777778888888888888888888888765 5677788888
Q ss_pred HHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010 515 HGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMM 571 (664)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 571 (664)
.++...|++++|+..|++++...|+ +...+..+...+...|++++|+..+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK---DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888766554 66777778888888888888888877654
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.1e-14 Score=133.43 Aligned_cols=225 Identities=12% Similarity=0.070 Sum_probs=144.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CC----HHHHHH
Q 006010 299 TYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFH--VN----EYIYST 372 (664)
Q Consensus 299 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 372 (664)
.+..+...+...|++++|...++++.+.. .+...+..+...+...|++++|.+.+.+..+.... ++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444455555555555555554443 34444555555555555555555555554443211 01 355666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006010 373 LISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGK 452 (664)
Q Consensus 373 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 452 (664)
+...+...|++++|+..++++.+.. |+. ..+...|++++|...++.+.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 6666777777777777777766642 232 23555567777777777777653 4455667777777888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHH
Q 006010 453 GHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNE 532 (664)
Q Consensus 453 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 532 (664)
+++|...++.+.+.. +.+...+..+...+...|++++|...++++++.. +.+..++..+..++...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888888888877765 4567777888888888888888888888887753 33467788888888888888888888888
Q ss_pred hhhcC
Q 006010 533 MLCLE 537 (664)
Q Consensus 533 ~~~~~ 537 (664)
++...
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 86543
No 44
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.63 E-value=1.1e-11 Score=129.99 Aligned_cols=457 Identities=9% Similarity=0.006 Sum_probs=290.9
Q ss_pred hhHHHHHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC---HHHHHH
Q 006010 63 QPFSDEIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHL---VEEAIR 139 (664)
Q Consensus 63 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 139 (664)
++..+..|+...... +.+...|..++..+.+.+.++.++.+|++++..- |.....|...+..-.+.|. ++.+.+
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 344455565554443 3588999999999999999999999999999865 5678899999998888888 999999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHcCCH--------hHHHHHHHHHHhcccCCC-CcC-HHHHHHHHHHHH------
Q 006010 140 LFHTMVDEFHCKRTVKSFNSVLNVIIQEGLY--------HRALEFYNHIVNAKHMNI-LPN-TLTFNLVIKTVC------ 203 (664)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~~~~~~~~-~~~-~~~~~~ll~~~~------ 203 (664)
+|++.+.....+|++..|...+....+.++. +...++|+.++.. .|. .++ ...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~--vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK--CAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH--TTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--hCcccccchHHHHHHHHHHHhccccC
Confidence 9999987633348999999888877776654 3355788887653 344 343 457777776544
Q ss_pred ---hcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 006010 204 ---RLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGR 280 (664)
Q Consensus 204 ---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 280 (664)
..++++.+..+|+.++......-..+|......--..+. ..+.+++.+.. .+++.
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~~---------------------~~y~~ 260 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGELS---------------------AQYMN 260 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHHH---------------------HHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHhh---------------------HHHHH
Confidence 234578889999998854211112333332221111111 11222221110 11222
Q ss_pred HHHHHHHHHHc--CCC---------------C-----C---HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCC
Q 006010 281 AAKLVDNMFLK--GCL---------------P-----N---EVTYNTLIHGLCLKG-------NLDKAVSLLDRMVASKC 328 (664)
Q Consensus 281 a~~~~~~~~~~--g~~---------------p-----~---~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~ 328 (664)
|...+.++... ++. | + ...|...+..--..+ ..+.+..+|++++.. +
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~ 339 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-V 339 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-c
Confidence 22222221100 000 0 0 123444443322221 123456677777765 3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------C
Q 006010 329 MPNEVTYGTIINGLVKLGRAVDGA-RVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKG---------C 398 (664)
Q Consensus 329 ~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~ 398 (664)
+-+...|...+..+...|+.++|. +++++..... +.+...+...+...-+.|+++.|..+|+++.... -
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 446777777777777778877886 8888877643 3356666777777777888888888888877531 0
Q ss_pred CC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHH
Q 006010 399 KP------------NTVVYSALIDGLCRVGKPDEAEEILFEMINN-GCAANAFTYSSLMKGFFES-GKGHKAVEIWKDMA 464 (664)
Q Consensus 399 ~~------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~ 464 (664)
.| ....|...+....+.|+.+.|..+|..+++. + ......|...+..-.+. ++.+.|.++|+...
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~L 497 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGL 497 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 12 1346777788778888899999999999876 2 22233443333333344 45899999999888
Q ss_pred HCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCc--CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCC
Q 006010 465 KNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKP--DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQP 542 (664)
Q Consensus 465 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 542 (664)
+.. +.+...+...+......|+.+.|..+|+..+.....+ ....|...+..-.+.|+.+.+.++.+++....|.
T Consensus 498 k~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~--- 573 (679)
T 4e6h_A 498 KYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE--- 573 (679)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT---
T ss_pred HHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Confidence 763 5566777788888888899999999999988764322 3467888888888899999999999998754443
Q ss_pred CHhHHHHHHHHH
Q 006010 543 DVFTYNILLNAL 554 (664)
Q Consensus 543 ~~~~~~~l~~~~ 554 (664)
......+++-|
T Consensus 574 -~~~~~~f~~ry 584 (679)
T 4e6h_A 574 -VNKLEEFTNKY 584 (679)
T ss_dssp -CCHHHHHHHHT
T ss_pred -CcHHHHHHHHh
Confidence 23344445444
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=2.3e-13 Score=128.65 Aligned_cols=239 Identities=10% Similarity=0.019 Sum_probs=184.3
Q ss_pred ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CHHHHHHH
Q 006010 82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKR-TVKSFNSV 160 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l 160 (664)
++..+......+...|+++.|...|+.+.+..+. +..++..++.+|...|++++|++.|++.+.....+. ...+|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 4456778888999999999999999999987643 555788888899999999999999999876321111 24558899
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhc
Q 006010 161 LNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKE 240 (664)
Q Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (664)
+..+...|++++|...|+++.+..+ .+..++..+...+...|++++|.+.|++..+.. +.+...+..+...+...
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDT----TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST----TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH
Confidence 9999999999999999999987322 245688889999999999999999999998874 55677788777445555
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHhc
Q 006010 241 NRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGE---LGRAAKLVDNMFLKG-CLPN------EVTYNTLIHGLCLK 310 (664)
Q Consensus 241 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~g-~~p~------~~~~~~l~~~~~~~ 310 (664)
+++++|.+.|+++.+.. +.+...+..+...+...|+ +++|...++++.... ..|+ ..+|..+...|...
T Consensus 156 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 69999999999988753 3346777778888888887 888888888876541 1122 24677777888888
Q ss_pred CChHHHHHHHHHHHHCC
Q 006010 311 GNLDKAVSLLDRMVASK 327 (664)
Q Consensus 311 g~~~~a~~~~~~~~~~~ 327 (664)
|++++|.+.++++.+..
T Consensus 235 ~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 235 RDKVKADAAWKNILALD 251 (272)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 88888888888888763
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=2.2e-13 Score=128.80 Aligned_cols=258 Identities=11% Similarity=0.071 Sum_probs=188.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 006010 369 IYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAA--NAFTYSSLMKG 446 (664)
Q Consensus 369 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 446 (664)
.+......+...|++++|+..++++.+.... +...+..+...+...|++++|...++++++.+..+ ....+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 4555667778888888888888888876432 45577778888888888888888888888743111 23457888888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHH
Q 006010 447 FFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEA 526 (664)
Q Consensus 447 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 526 (664)
+...|++++|++.+++..+.. +.+...+..+...+...|++++|...+++.++.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988865 4566788999999999999999999999998762 33566777777344556799999
Q ss_pred HHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC---hhHHHHHHHHHHHCC-CCCCHHHHHHHHHhhhhhccCCCCchhh
Q 006010 527 LKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN---ISHSIDLLNSMMDRG-CDPDLVTCNIFLTALKEKLEAPQDGTDF 602 (664)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 602 (664)
...|++++...+. +...+..+..++...|+ +++|...++++.+.. ..|+.. -..+...
T Consensus 162 ~~~~~~a~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~-------------- 223 (272)
T 3u4t_A 162 DSSFVKVLELKPN---IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KDELIEA-------------- 223 (272)
T ss_dssp HHHHHHHHHHSTT---CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HHHHHHH--------------
T ss_pred HHHHHHHHHhCcc---chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hHHHHHH--------------
Confidence 9999999876554 56778888888888888 888999999988631 123321 1111111
Q ss_pred hHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhccc
Q 006010 603 LNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRP 648 (664)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 648 (664)
+..++.+|...|++++|.+.++++.+. .+.++..+..+.......
T Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 224 NEYIAYYYTINRDKVKADAAWKNILAL-DPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHC------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-CccHHHHHHHhhhhhccc
Confidence 223556699999999999999999985 244667777666555443
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=4.3e-13 Score=131.65 Aligned_cols=227 Identities=12% Similarity=0.057 Sum_probs=112.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006010 300 YNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGR-AVDGARVLMSMEERKFHVNEYIYSTLISGLF 378 (664)
Q Consensus 300 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (664)
|..+...+...|++++|++.+++++... +-+...|..+...+...|+ +++|+..++++.+..+. +...|..+..++.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 3444444444444555555554444432 2233444444444444443 55555555554444333 4444555555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHH-
Q 006010 379 KEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFE-SGKGHKA- 456 (664)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a- 456 (664)
..|++++|+..|+++++.... +...|..+..++...|++++|+..++++++.. +.+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence 555555555555555544322 44455555555555555555555555555543 3345555555555555 3333444
Q ss_pred ----HHHHHHHHHCCCCCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcC---------
Q 006010 457 ----VEIWKDMAKNNCVYNEVCYSVLIHGLCEDG--KLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAG--------- 521 (664)
Q Consensus 457 ----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------- 521 (664)
++.+++.+... +.+...|..+...+...| ++++|.+.+.++ +. -+.+...+..++.+|.+.|
T Consensus 256 ~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 256 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 35555555544 344455555555555555 456666666555 22 1223455555666665542
Q ss_pred CHHHHHHHHHHh
Q 006010 522 SVEEALKLFNEM 533 (664)
Q Consensus 522 ~~~~A~~~~~~~ 533 (664)
.+++|+.+|+++
T Consensus 333 ~~~~A~~~~~~l 344 (382)
T 2h6f_A 333 ILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 235666666665
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=4.5e-14 Score=133.77 Aligned_cols=250 Identities=8% Similarity=-0.038 Sum_probs=167.4
Q ss_pred hcCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006010 379 KEGKAEDAMKLWKQMMEKGCK---PNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHK 455 (664)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 455 (664)
..|++++|+..++++.+.... .+..++..+...+...|++++|...|+++++.. +.+...+..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777777765321 134566777777788888888888888877764 4567778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 006010 456 AVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLC 535 (664)
Q Consensus 456 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (664)
|.+.++++.+.. +.+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888887765 446677888888888888888888888888774 34444444444455667888888888887765
Q ss_pred cCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCC
Q 006010 536 LEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQR 615 (664)
Q Consensus 536 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 615 (664)
..+. +...+ .++..+...++.++|+..++++.+. .|+...-. . ..+..++.++.+.|+
T Consensus 173 ~~~~---~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~--~--------------~~~~~la~~~~~~g~ 230 (275)
T 1xnf_A 173 KSDK---EQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHL--S--------------ETNFYLGKYYLSLGD 230 (275)
T ss_dssp HSCC---CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHH--H--------------HHHHHHHHHHHHTTC
T ss_pred cCCc---chHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--cccccccc--c--------------HHHHHHHHHHHHcCC
Confidence 4332 33333 3566667777888888888887652 22210000 0 011234455888899
Q ss_pred cchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHH
Q 006010 616 TSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKC 658 (664)
Q Consensus 616 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 658 (664)
+++|...++++.+. .|+ .+.....++...|++++|++.|
T Consensus 231 ~~~A~~~~~~al~~--~p~--~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 231 LDSATALFKLAVAN--NVH--NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTT--CCT--TCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhC--Cch--hHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999998864 332 2344466777888998888765
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=3.5e-13 Score=132.30 Aligned_cols=233 Identities=12% Similarity=0.018 Sum_probs=166.8
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 006010 83 DSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHL-VEEAIRLFHTMVDEFHCKRTVKSFNSVL 161 (664)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 161 (664)
..+|..+...+...|++++|...++.++..++. +..+|..+..++...|+ +++|+..|++++.. .+.+..+|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence 456777777888888888888888888877643 67778888888888886 88888888887765 455677888888
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHh-c
Q 006010 162 NVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK-E 240 (664)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 240 (664)
.++...|++++|+..|+++++..+ -+...|..+..++.+.|++++|++.|+++++.+ +.+...|+.+..++.. .
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP----~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA----KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc----cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 888888888888888888877321 255677777888888888888888888887765 4567778888888777 5
Q ss_pred CChhHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--
Q 006010 241 NRLDEA-----VLLLDEMQVDGCFPTPVTFNVLINGLCKNG--ELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKG-- 311 (664)
Q Consensus 241 g~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-- 311 (664)
|..++| +..+++..... +-+...|+.+...+...| ++++|++.+.++ +. .+.+...+..+..+|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcc
Confidence 554666 46677766543 235667777777777766 577777777776 32 2335566677777776653
Q ss_pred -------ChHHHHHHHHHH-HHC
Q 006010 312 -------NLDKAVSLLDRM-VAS 326 (664)
Q Consensus 312 -------~~~~a~~~~~~~-~~~ 326 (664)
..++|.++|+++ .+.
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHHHHHHHHHHHHh
Confidence 246777777777 443
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=2.7e-12 Score=121.27 Aligned_cols=219 Identities=11% Similarity=-0.029 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhcccCCCCcCHHHH
Q 006010 120 SFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQ----EGLYHRALEFYNHIVNAKHMNILPNTLTF 195 (664)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 195 (664)
++..+...+...|++++|++.|++..+ +.+..++..+...+.. .+++++|...|++..+ .+ +...+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~---~~---~~~a~ 77 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD---LN---YSNGC 77 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---TT---CHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH---CC---CHHHH
Confidence 344444444444444444444444432 1223344444444444 4444444444444443 11 33334
Q ss_pred HHHHHHHHh----cCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 006010 196 NLVIKTVCR----LGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK----ENRLDEAVLLLDEMQVDGCFPTPVTFNV 267 (664)
Q Consensus 196 ~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 267 (664)
..+...+.. .+++++|++.|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 444444444 444444444444444332 33444444444444 444444444444444432 3333344
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006010 268 LINGLCK----NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCL----KGNLDKAVSLLDRMVASKCMPNEVTYGTII 339 (664)
Q Consensus 268 li~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 339 (664)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 4444444 444444444444444332 23333444444444 444444444444444432 133333344
Q ss_pred HHHHh----cCChhHHHHHHHHHHH
Q 006010 340 NGLVK----LGRAVDGARVLMSMEE 360 (664)
Q Consensus 340 ~~~~~----~~~~~~a~~~~~~~~~ 360 (664)
..|.. .+++++|.+.+++..+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHH
Confidence 44444 4444444444444443
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=6.4e-13 Score=123.94 Aligned_cols=210 Identities=11% Similarity=0.020 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006010 367 EYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKG 446 (664)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 446 (664)
...+..+...+...|++++|+..++++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 34566666677777777777777777766532 256667777777777777778877777777654 4466777777777
Q ss_pred HHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHH
Q 006010 447 FFESGKGHKAVEIWKDMAKNNC-VYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEE 525 (664)
Q Consensus 447 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 525 (664)
|...|++++|.+.++++.+.+. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888887776222 2345567777778888888888888888887653 3346777888888888888888
Q ss_pred HHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006010 526 ALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNI 584 (664)
Q Consensus 526 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 584 (664)
|..++++++...+ .+...+..+...+...|++++|.+.++++.+ ..|+...+..
T Consensus 194 A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~ 247 (252)
T 2ho1_A 194 ARQYYDLFAQGGG---QNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHTTSC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSHHHHH
T ss_pred HHHHHHHHHHhCc---CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCHHHHH
Confidence 8888888854333 3566777777888888888888888888887 4565554433
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=6.9e-13 Score=123.71 Aligned_cols=206 Identities=12% Similarity=0.006 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006010 402 TVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHG 481 (664)
Q Consensus 402 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (664)
...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567778888999999999999999999874 5678899999999999999999999999998876 4577889999999
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCCh
Q 006010 482 LCEDGKLREARMVWTQMLSRGCKP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNI 560 (664)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 560 (664)
+...|++++|.+.++++...+..| +...+..++..+...|++++|..++++++...+. +...+..+...+...|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN---QPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCCH
Confidence 999999999999999998833345 4567888999999999999999999999765544 677888999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHH-HHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHH
Q 006010 561 SHSIDLLNSMMDRGCDPDLV-TCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTST 637 (664)
Q Consensus 561 ~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 637 (664)
++|...++++.+ ..|+.. .+..+... +...|++++|.++++++.+. .|+...
T Consensus 192 ~~A~~~~~~~~~--~~~~~~~~~~~~~~~---------------------~~~~g~~~~A~~~~~~~~~~--~p~~~~ 244 (252)
T 2ho1_A 192 VPARQYYDLFAQ--GGGQNARSLLLGIRL---------------------AKVFEDRDTAASYGLQLKRL--YPGSLE 244 (252)
T ss_dssp HHHHHHHHHHHT--TSCCCHHHHHHHHHH---------------------HHHTTCHHHHHHHHHHHHHH--CTTSHH
T ss_pred HHHHHHHHHHHH--hCcCcHHHHHHHHHH---------------------HHHccCHHHHHHHHHHHHHH--CCCCHH
Confidence 999999999987 445433 33333333 88999999999999999885 444433
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=7.1e-12 Score=118.34 Aligned_cols=222 Identities=11% Similarity=-0.070 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006010 227 IYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCK----NGELGRAAKLVDNMFLKGCLPNEVTYNT 302 (664)
Q Consensus 227 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 302 (664)
..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344444455555555555555555555442 233444444455555 555555555555554443 3444444
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006010 303 LIHGLCL----KGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVK----LGRAVDGARVLMSMEERKFHVNEYIYSTLI 374 (664)
Q Consensus 303 l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 374 (664)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.+++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 4445544 555555555555554442 34444444444444 455555555555444432 233344444
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006010 375 SGLFK----EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCR----VGKPDEAEEILFEMINNGCAANAFTYSSLMKG 446 (664)
Q Consensus 375 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 446 (664)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 44444 445555555555544432 23344444444444 455555555555555442 13344444444
Q ss_pred HHh----cCChHHHHHHHHHHHHC
Q 006010 447 FFE----SGKGHKAVEIWKDMAKN 466 (664)
Q Consensus 447 ~~~----~~~~~~a~~~~~~~~~~ 466 (664)
|.. .+++++|.+.+++..+.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHc
Confidence 444 45555555555554443
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=2.8e-13 Score=125.59 Aligned_cols=198 Identities=10% Similarity=0.106 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006010 403 VVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGL 482 (664)
Q Consensus 403 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 482 (664)
..+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344445555555666666666666665543 3455556666666666666666666666665543 34555566666666
Q ss_pred HcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhH
Q 006010 483 CEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISH 562 (664)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 562 (664)
...|++++|.+.++++.+.. +.+...+..++..+...|++++|..++++++...+. +...+..+...+...|++++
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN---DTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCCHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHcCCHHH
Confidence 66666666666666666542 234555666666666667777777776666544332 45566666666666777777
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 563 SIDLLNSMMDRGCDPD-LVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 563 A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
|...++++.+. .|+ ...+..+... +...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~--~~~~~~~~~~la~~---------------------~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQ--DPGHADAFYNAGVT---------------------YAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHH---------------------HHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CcccHHHHHHHHHH---------------------HHHccCHHHHHHHHHHHHcc
Confidence 77777666652 233 2222222222 66667777777777776664
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=1.1e-12 Score=119.90 Aligned_cols=213 Identities=8% Similarity=-0.027 Sum_probs=153.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010 366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMK 445 (664)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 445 (664)
+...+..+...+...|++++|+..++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 445566667777777777777777777776532 246667777777777788888888887777653 456677777778
Q ss_pred HHHhc-CChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCH
Q 006010 446 GFFES-GKGHKAVEIWKDMAKNNC-VYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSV 523 (664)
Q Consensus 446 ~~~~~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 523 (664)
.+... |++++|...++.+.+... +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 888888888888776221 2235667778888888888888888888887753 23467788888888888999
Q ss_pred HHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006010 524 EEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIF 585 (664)
Q Consensus 524 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 585 (664)
++|..++++++...+ ..+...+..+...+...|+.++|..+++.+.+ ..|+......+
T Consensus 164 ~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~ 221 (225)
T 2vq2_A 164 GDADYYFKKYQSRVE--VLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 999988888865443 12566677777778888888888888888876 45665554443
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=1.9e-13 Score=129.47 Aligned_cols=246 Identities=11% Similarity=-0.016 Sum_probs=148.6
Q ss_pred cCChHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 006010 310 KGNLDKAVSLLDRMVASKC---MPNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDA 386 (664)
Q Consensus 310 ~g~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 386 (664)
.|++++|...++++.+... +.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 3555566666666555421 112344555555666666666666666666555333 455666666666666777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006010 387 MKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKN 466 (664)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 466 (664)
+..++++.+... .+..++..+...+...|++++|...++++.+.. |+..........+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 777766666532 245666666777777777777777777776653 22222333333445567778888877766665
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCC--c-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCC
Q 006010 467 NCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCK--P-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPD 543 (664)
Q Consensus 467 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 543 (664)
. +++...+. ++..+...++.++|...++++...... | +..++..++..|...|++++|...|++++...+. +
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~ 248 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH---N 248 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT---T
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch---h
Confidence 4 33333333 566667777778888888877654211 0 1467788888888899999999999988643322 2
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHH
Q 006010 544 VFTYNILLNALCKQSNISHSIDLL 567 (664)
Q Consensus 544 ~~~~~~l~~~~~~~g~~~~A~~~~ 567 (664)
+.....++...|++++|++.+
T Consensus 249 ---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 ---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---CHHHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHHHhhHHHH
Confidence 233355667778888877765
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=1.5e-12 Score=118.95 Aligned_cols=201 Identities=9% Similarity=0.016 Sum_probs=170.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010 401 NTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIH 480 (664)
Q Consensus 401 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 480 (664)
+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45677888899999999999999999999864 5678899999999999999999999999998876 567788999999
Q ss_pred HHHcC-CChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC
Q 006010 481 GLCED-GKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS 558 (664)
Q Consensus 481 ~~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 558 (664)
.+... |++++|...++++++.+..|+ ...+..++.++...|++++|...+++++...+. +...+..+...+...|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ---FPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHcC
Confidence 99999 999999999999998333344 577889999999999999999999999765544 5778889999999999
Q ss_pred ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 559 NISHSIDLLNSMMDRGCDP--DLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 559 ~~~~A~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
++++|...++++.+. .| +...+..+... +...|+.++|..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~---------------------~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSR--VEVLQADDLLLGWKI---------------------AKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHH--HCSCCHHHHHHHHHH---------------------HHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCCHHHHHHHHHH---------------------HHhcCcHHHHHHHHHHHHHh
Confidence 999999999999874 44 34444333333 78899999999999999864
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=3e-13 Score=125.33 Aligned_cols=208 Identities=14% Similarity=0.143 Sum_probs=146.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010 366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMK 445 (664)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 445 (664)
....+..+...+...|++++|+..|+++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 444566666777777888888888887776532 356677777777888888888888888877764 456777788888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHH
Q 006010 446 GFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEE 525 (664)
Q Consensus 446 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 525 (664)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888887765 4566778888888888888888888888887753 3456778888888889999999
Q ss_pred HHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010 526 ALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTC 582 (664)
Q Consensus 526 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 582 (664)
|...+++++...+. +...|..+..+|...|++++|...++++.+ ..|+....
T Consensus 178 A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~ 229 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG---HADAFYNAGVTYAYKENREKALEMLDKAID--IQPDHMLA 229 (243)
T ss_dssp HHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHHHHhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcchHHH
Confidence 99999988765443 567788888889999999999999999887 45655443
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=2e-13 Score=137.77 Aligned_cols=95 Identities=19% Similarity=0.126 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCCHHHH
Q 006010 335 YGTIINGLVKLGRAVDGARVLMSMEERKFHVNE----YIYSTLISGLFKEGKAEDAMKLWKQMMEK----G-CKPNTVVY 405 (664)
Q Consensus 335 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 405 (664)
+..+...+...|++++|...++++.+.... +. ..+..+...|...|++++|+..+++..+. + ......++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334445556666666666666666655332 22 34555555666666666666666655432 0 01122344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 006010 406 SALIDGLCRVGKPDEAEEILFEMIN 430 (664)
Q Consensus 406 ~~li~~~~~~~~~~~a~~~~~~~~~ 430 (664)
..+...|...|++++|...++++.+
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~ 154 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLT 154 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555555555666666665555543
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=9.9e-13 Score=134.38 Aligned_cols=212 Identities=11% Similarity=-0.013 Sum_probs=176.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 006010 418 PDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKG-HKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWT 496 (664)
Q Consensus 418 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (664)
++++...++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666777665543 55788888888999999999 99999999988876 5567889999999999999999999999
Q ss_pred HHHhCCCCcCHHhHHHHHHHHHHc---------CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc--------CC
Q 006010 497 QMLSRGCKPDVVAYSSMIHGLCNA---------GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ--------SN 559 (664)
Q Consensus 497 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~ 559 (664)
+.++. .|+...+..+..++... |++++|+..|++++...+. +...|..+..+|... |+
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL---DGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHhhccccch
Confidence 99985 57778888999999998 9999999999999876665 678899999999998 99
Q ss_pred hhHHHHHHHHHHHCCCCC----CHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCCh
Q 006010 560 ISHSIDLLNSMMDRGCDP----DLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQT 635 (664)
Q Consensus 560 ~~~A~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 635 (664)
+++|+..|+++.+ +.| +...+..+... |...|++++|.+.++++.+. .+.++
T Consensus 237 ~~~A~~~~~~al~--~~p~~~~~~~~~~~lg~~---------------------~~~~g~~~~A~~~~~~al~l-~p~~~ 292 (474)
T 4abn_A 237 SQQALSAYAQAEK--VDRKASSNPDLHLNRATL---------------------HKYEESYGEALEGFSQAAAL-DPAWP 292 (474)
T ss_dssp HHHHHHHHHHHHH--HCGGGGGCHHHHHHHHHH---------------------HHHTTCHHHHHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHH---------------------HHHcCCHHHHHHHHHHHHHh-CCCCH
Confidence 9999999999998 456 33444444433 99999999999999999986 34467
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHh
Q 006010 636 STWERVVQELCRPKRIQAAINKCWS 660 (664)
Q Consensus 636 ~~~~~l~~~~~~~g~~~~A~~~~~~ 660 (664)
..+..+..++...|++++|++.+.+
T Consensus 293 ~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 293 EPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8899999999999999999986554
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=3.8e-12 Score=112.10 Aligned_cols=172 Identities=14% Similarity=0.134 Sum_probs=124.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010 401 NTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIH 480 (664)
Q Consensus 401 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 480 (664)
+...|..+...+...|++++|+..|+++++.. |.+...+..+...|...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45566667777777777777777777777654 5566677777777777777777777777776654 445566666777
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCCh
Q 006010 481 GLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNI 560 (664)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 560 (664)
.+...++++.|...+.+..... +.+...+..+..++.+.|++++|+..|+++++.+|. +...|..+..+|.+.|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG---FIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch---hhhHHHHHHHHHHHCCCH
Confidence 7777788888888887777653 334567777788888888888888888888765554 566777888888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHH
Q 006010 561 SHSIDLLNSMMDRGCDPDLV 580 (664)
Q Consensus 561 ~~A~~~~~~~~~~~~~p~~~ 580 (664)
++|+..|+++++ +.|+..
T Consensus 158 ~~A~~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 158 DEAVKYFKKALE--KEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHHHHh--CCccCH
Confidence 888888888877 566543
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=6.1e-13 Score=133.92 Aligned_cols=245 Identities=13% Similarity=0.047 Sum_probs=149.4
Q ss_pred CChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC---CCC-CC
Q 006010 81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVL---EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEF---HCK-RT 153 (664)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~-~~ 153 (664)
.....+......+...|++++|...|+++....+... ..++..++..+...|++++|+..|++.+... +.. ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3556677778888889999999999988887654321 3467788888888899999998888764421 111 22
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCC--cCHHHHHHHHHHHHhcCC--------------------hhHH
Q 006010 154 VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNIL--PNTLTFNLVIKTVCRLGL--------------------VDNA 211 (664)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~--------------------~~~A 211 (664)
..++..++..+...|++++|...++++.+..+.... ....++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 457778888888888999888888887652111000 013366677777777777 7777
Q ss_pred HHHHhhcccC----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChhHH
Q 006010 212 IQLFREMPVR----NC-EPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGC-FPT----PVTFNVLINGLCKNGELGRA 281 (664)
Q Consensus 212 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~a 281 (664)
.+.+++.... +. +....++..+...+...|++++|...+++...... .++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7776655321 10 11123566666666677777777766666543210 011 22555566666666666666
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010 282 AKLVDNMFLKGCL-PN----EVTYNTLIHGLCLKGNLDKAVSLLDRMVA 325 (664)
Q Consensus 282 ~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (664)
...+++....... ++ ..++..+...+...|++++|...+++..+
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 6666665432100 01 23445555555556666666666555543
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=1.3e-12 Score=131.74 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010 264 TFNVLINGLCKNGELGRAAKLVDNMFLKGCL-PN----EVTYNTLIHGLCLKGNLDKAVSLLDRMVA 325 (664)
Q Consensus 264 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (664)
++..+...|...|++++|...+++....... ++ ..++..+...+...|++++|...+++...
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4555556666666666666666655432100 01 12445555556666666666666655543
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=7.1e-13 Score=133.44 Aligned_cols=284 Identities=16% Similarity=0.073 Sum_probs=170.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-C
Q 006010 330 PNEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVN---EYIYSTLISGLFKEGKAEDAMKLWKQMMEK----GCKP-N 401 (664)
Q Consensus 330 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 401 (664)
.....+......+...|++++|...++++.+...... ...+..+...+...|++++|...+++.... +-.| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445566667777888888888888888777643311 346677777888888888888888876542 1111 2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHH
Q 006010 402 TVVYSALIDGLCRVGKPDEAEEILFEMINNGC-AAN----AFTYSSLMKGFFESGK--------------------GHKA 456 (664)
Q Consensus 402 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a 456 (664)
..++..+...+...|++++|...++++.+... ..+ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34566677777778888888888887776420 011 3356666777777777 7777
Q ss_pred HHHHHHHHHC----CC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC-CcC----HHhHHHHHHHHHHcCCHHHH
Q 006010 457 VEIWKDMAKN----NC-VYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGC-KPD----VVAYSSMIHGLCNAGSVEEA 526 (664)
Q Consensus 457 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A 526 (664)
.+.++..... +. +....++..+...+...|++++|...+++.++... .++ ..++..++..+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7777665432 10 11123556666667777777777777776654210 011 12566666677777777777
Q ss_pred HHHHHHhhhcCCCCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhh
Q 006010 527 LKLFNEMLCLEPKSQPD---VFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFL 603 (664)
Q Consensus 527 ~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 603 (664)
...+++++...+..... ..++..+...|...|++++|...++++.+ +.+........ ...+
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~--------------~~~~ 310 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA--IAQELNDRIGE--------------GRAC 310 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHH--------------HHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HHHhcCCcHHH--------------HHHH
Confidence 77777775443321111 33555666667777777777777777664 32221110000 1122
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 604 NELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
..++.++...|++++|.++++++.+.
T Consensus 311 ~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 311 WSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555677777777777777777664
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=5.6e-13 Score=130.28 Aligned_cols=271 Identities=13% Similarity=0.043 Sum_probs=152.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHH
Q 006010 374 ISGLFKEGKAEDAMKLWKQMMEKGCKPN----TVVYSALIDGLCRVGKPDEAEEILFEMINN----GC-AANAFTYSSLM 444 (664)
Q Consensus 374 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~ 444 (664)
...+...|++++|+..++++.+.... + ...+..+...+...|++++|...++++.+. +. +.....+..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 33444445555555555544443211 1 133444444455555555555555444321 10 11133444555
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHcCCC--------------------hHHHHHHHHHHH
Q 006010 445 KGFFESGKGHKAVEIWKDMAKNNC-VYN----EVCYSVLIHGLCEDGK--------------------LREARMVWTQML 499 (664)
Q Consensus 445 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~ 499 (664)
..|...|++++|.+.+++..+... .++ ..++..+...+...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 555555666666555555443210 011 2245556666666666 666666666554
Q ss_pred hC----CCCc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCC---CHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010 500 SR----GCKP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQP---DVFTYNILLNALCKQSNISHSIDLLNSMM 571 (664)
Q Consensus 500 ~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 571 (664)
.. +..+ ...++..+...+...|++++|...+++++...+.... ....+..+...+...|++++|...+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 1111 1346777788888888888888888887543221111 12267777788888899999998888877
Q ss_pred HCCC-CCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc----CCCC-ChHHHHHHHHHh
Q 006010 572 DRGC-DPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK----FLSP-QTSTWERVVQEL 645 (664)
Q Consensus 572 ~~~~-~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~ 645 (664)
+... .++...... .+..++.++...|++++|.++++++.+. +..+ ....+..++..+
T Consensus 251 ~~~~~~~~~~~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 251 LLARQLKDRAVEAQ-----------------SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 313 (338)
T ss_dssp HHHHHTTCHHHHHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHH-----------------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 5210 111111111 1123455588899999999998888764 1111 135677888899
Q ss_pred cccchHHHHHHHHHhhh
Q 006010 646 CRPKRIQAAINKCWSNL 662 (664)
Q Consensus 646 ~~~g~~~~A~~~~~~~l 662 (664)
.+.|++++|.+.+.+.+
T Consensus 314 ~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 314 TALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHH
Confidence 99999999998888754
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.47 E-value=4.1e-12 Score=126.68 Aligned_cols=234 Identities=10% Similarity=-0.018 Sum_probs=160.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC------CCCHHHHH
Q 006010 408 LIDGLCRVGKPDEAEEILFEMINN----GCAA-NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNC------VYNEVCYS 476 (664)
Q Consensus 408 li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 476 (664)
....+...|++++|...++++.+. +.++ ...++..+...|...|++++|...+++..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566778888888888877664 1111 235677777788888888888888877665310 11234677
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhC----CCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC--CC-CCCHhHHH
Q 006010 477 VLIHGLCEDGKLREARMVWTQMLSR----GCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEP--KS-QPDVFTYN 548 (664)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~-~~~~~~~~ 548 (664)
.+...|...|++++|...+++.++. +-.+. ..++..++..|...|++++|...+++++.... +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888899999999999998887753 11111 24788899999999999999999999864211 11 12355788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCC---cchHHHHHH
Q 006010 549 ILLNALCKQSNISHSIDLLNSMMDRGCD-PDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQR---TSGGFKIVE 624 (664)
Q Consensus 549 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~ 624 (664)
.+...|.+.|++++|...+++..+.... .+...... + ..++.++...|+ +++|..+++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~-----------------~~l~~~~~~~~~~~~~~~al~~~~ 330 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-F-----------------EFLKSLYLSGPDEEAIQGFFDFLE 330 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-H-----------------HHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-H-----------------HHHHHHHhCCCcHHHHHHHHHHHH
Confidence 8889999999999999999998852110 11111111 1 124445888888 677777776
Q ss_pred HHHHcCCCC-ChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 625 VMLQKFLSP-QTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 625 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
+. +..+ ....+..++..+...|++++|.+.+.+.+
T Consensus 331 ~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 331 SK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 65 2232 34677889999999999999999988764
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=2.2e-11 Score=117.01 Aligned_cols=218 Identities=11% Similarity=0.057 Sum_probs=129.5
Q ss_pred chHHHHHHHHHhCCCCcCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Q 006010 100 KSLEMVLYRMRREKRVVLEKSFIFIFKAYGK-------AHLV-------EEAIRLFHTMVDEFHCKRTVKSFNSVLNVII 165 (664)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (664)
+.|..+|++++... +.+..+|..++..+.. .|++ ++|+..|++.+... .+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHHH
Confidence 45666777777654 3356667766666543 3654 67777777765421 2345566777777777
Q ss_pred HcCCHhHHHHHHHHHHhcccCCCCcC-HH-HHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHH-hcCC
Q 006010 166 QEGLYHRALEFYNHIVNAKHMNILPN-TL-TFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLC-KENR 242 (664)
Q Consensus 166 ~~~~~~~A~~~~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~ 242 (664)
+.|++++|..+|+++++ +.|+ .. +|..++..+.+.|++++|+.+|++..+.+ +.+...|........ ..|+
T Consensus 111 ~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA-----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HTTCHHHHHHHHHHHHT-----SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCC
T ss_pred hcCCHHHHHHHHHHHHh-----ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCC
Confidence 77777777777777765 2333 22 56666666666777777777777766553 333344433332222 2466
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChHHHHHH
Q 006010 243 LDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKG-CLP--NEVTYNTLIHGLCLKGNLDKAVSL 319 (664)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-~~p--~~~~~~~l~~~~~~~g~~~~a~~~ 319 (664)
.++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++......|+.+.|..+
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666665532 2245566666666666666666666666666542 232 344555666666666666666666
Q ss_pred HHHHHHC
Q 006010 320 LDRMVAS 326 (664)
Q Consensus 320 ~~~~~~~ 326 (664)
++++.+.
T Consensus 264 ~~~a~~~ 270 (308)
T 2ond_A 264 EKRRFTA 270 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=1.4e-12 Score=125.84 Aligned_cols=244 Identities=14% Similarity=0.059 Sum_probs=138.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------C-CC
Q 006010 404 VYSALIDGLCRVGKPDEAEEILFEMINN-------GCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKN------N-CV 469 (664)
Q Consensus 404 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~ 469 (664)
++..+...+...|++++|..+++++.+. ..+.....+..+...|...|++++|...++++... + .+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4444445555555555555555555441 11223344555555566666666666666555442 1 12
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC------CCCc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC----
Q 006010 470 YNEVCYSVLIHGLCEDGKLREARMVWTQMLSR------GCKP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEP---- 538 (664)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---- 538 (664)
.....+..+...+...|++++|...++++++. +..| ...++..+...+...|++++|..++++++....
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 23445666777777777777777777776653 1122 245677778888888888888888888864310
Q ss_pred CCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHh
Q 006010 539 KSQP-DVFTYNILLNALCKQSNISHSIDLLNSMMDR-------GCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRL 610 (664)
Q Consensus 539 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~ 610 (664)
+..| ....+..+...|...|++++|...++++.+. ...+...........+. .++..+
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 254 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEERE--------------ECKGKQ 254 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHH--------------HC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH--------------HhcCch
Confidence 1122 2346777888888889999998888888752 12222222222222211 122336
Q ss_pred hhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 611 FKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
...+.+.++...++..... .+.....+..++.++.+.|++++|++.+.+.+
T Consensus 255 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 255 KDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp ---CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6778888888888887753 23355788899999999999999999988765
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=1.1e-10 Score=112.02 Aligned_cols=165 Identities=12% Similarity=0.015 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006010 404 VYSALIDGLCRVGKPDEAEEILFEMINNGCAANAF-TYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGL 482 (664)
Q Consensus 404 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 482 (664)
.|..++..+...|++++|..+|+++++.. +.+.. .|..++..+.+.|++++|..+|++..+.. +.+...|...+...
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~ 178 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALME 178 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 33334444444444444444444444321 11121 34444444444444444444444444332 12222222222111
Q ss_pred -HcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCC--CHhHHHHHHHHHHHcCC
Q 006010 483 -CEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQP--DVFTYNILLNALCKQSN 559 (664)
Q Consensus 483 -~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 559 (664)
...|++++|..+|++.++.. +-+...|..++..+.+.|++++|..+|++++... ...| ....|..++..+.+.|+
T Consensus 179 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-~l~p~~~~~l~~~~~~~~~~~g~ 256 (308)
T 2ond_A 179 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-SLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-SSCGGGCHHHHHHHHHHHHHHSC
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 12355555555555544431 1123444445555555555555555555553210 0111 23344555555555555
Q ss_pred hhHHHHHHHHHHH
Q 006010 560 ISHSIDLLNSMMD 572 (664)
Q Consensus 560 ~~~A~~~~~~~~~ 572 (664)
.++|..+++++.+
T Consensus 257 ~~~a~~~~~~a~~ 269 (308)
T 2ond_A 257 LASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=1.5e-11 Score=122.49 Aligned_cols=230 Identities=7% Similarity=-0.047 Sum_probs=143.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-----CHHHHH
Q 006010 338 IINGLVKLGRAVDGARVLMSMEER----KFHV-NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCK-P-----NTVVYS 406 (664)
Q Consensus 338 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 406 (664)
....+...|++++|...+.+..+. +..+ ...++..+...|...|+++.|+..+++..+.... + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334455556666666666665442 1111 2345566666666777777777776666542100 1 124566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC----C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 006010 407 ALIDGLCRVGKPDEAEEILFEMINNG----C-AANAFTYSSLMKGFFESGKGHKAVEIWKDMAKN----NC-VYNEVCYS 476 (664)
Q Consensus 407 ~li~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 476 (664)
.+...|...|++++|...++++++.. . .....++..+...|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 66677777777777777777766431 0 011235667777788888888888888777662 22 33455677
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCC---CcC-HHhHHHHHHHHHHcCC---HHHHHHHHHHhhhcCCCCCC-CHhHHH
Q 006010 477 VLIHGLCEDGKLREARMVWTQMLSRGC---KPD-VVAYSSMIHGLCNAGS---VEEALKLFNEMLCLEPKSQP-DVFTYN 548 (664)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~~ 548 (664)
.+...+...|++++|...+++.++... .|. ...+..+...+...|+ +++|..++++. +..| ....+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-----~~~~~~~~~~~ 343 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-----MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-----TCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-----cCHHHHHHHHH
Confidence 778888888888888888887765310 111 2234567777777787 77777777766 1222 233566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH
Q 006010 549 ILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 549 ~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
.+...|...|++++|...+++..+
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777888888888888888888775
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=2e-11 Score=107.43 Aligned_cols=166 Identities=19% Similarity=0.178 Sum_probs=115.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010 366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMK 445 (664)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 445 (664)
+..+|..+...|.+.|++++|+..|++..+..+. +..++..+..++...|++++|...+..+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4556666777777777777777777777665432 55666667777777777777777777776653 445666666667
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHH
Q 006010 446 GFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEE 525 (664)
Q Consensus 446 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 525 (664)
.+...++++.+.+.+....... +.+...+..+...+...|++++|++.|++.++.. +.+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 7777777777777777776654 4556667777777777777777777777777653 2345677777777777788888
Q ss_pred HHHHHHHhhh
Q 006010 526 ALKLFNEMLC 535 (664)
Q Consensus 526 A~~~~~~~~~ 535 (664)
|+..|+++++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888777754
No 72
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=3.1e-12 Score=124.91 Aligned_cols=241 Identities=12% Similarity=0.043 Sum_probs=137.1
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC---CCC-CCHHH
Q 006010 84 STFYSLIQHYANSGDFKSLEMVLYRMRREKRVVL---EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEF---HCK-RTVKS 156 (664)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~-~~~~~ 156 (664)
..+......+...|++++|...|+++.+..+... ...+..++..+...|++++|++.+++.+... +.. ....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3455567788888888888888888887654321 3467788888888888888888888764421 111 22456
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCC--cCHHHHHHHHHHHHhcCC--------------------hhHHHHH
Q 006010 157 FNSVLNVIIQEGLYHRALEFYNHIVNAKHMNIL--PNTLTFNLVIKTVCRLGL--------------------VDNAIQL 214 (664)
Q Consensus 157 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~--------------------~~~A~~~ 214 (664)
+..+...+...|++++|...+++..+..+.... ....++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 777888888888888888888887652111100 012366667777777777 6666666
Q ss_pred HhhcccC----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006010 215 FREMPVR----NC-EPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDG-----CFPTPVTFNVLINGLCKNGELGRAAKL 284 (664)
Q Consensus 215 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~ 284 (664)
+++.... +. +....++..+...+...|++++|...+++..... ......++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6654321 10 1112345555566666666666666666554320 000112444555555555555555555
Q ss_pred HHHHHHcCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006010 285 VDNMFLKGCL-PN----EVTYNTLIHGLCLKGNLDKAVSLLDRMV 324 (664)
Q Consensus 285 ~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 324 (664)
+++....... .+ ..++..+...+...|++++|...+++..
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5554322000 01 2233444444445555555555544443
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=6.9e-12 Score=128.14 Aligned_cols=215 Identities=12% Similarity=-0.026 Sum_probs=150.0
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006010 348 AVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKA-EDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILF 426 (664)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 426 (664)
++++...+++...... .+...+..+...+...|++ ++|+..|++..+.... +...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444544443322 2556666666677777777 7777777776665322 45667777777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC--------CChH
Q 006010 427 EMINNGCAANAFTYSSLMKGFFES---------GKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCED--------GKLR 489 (664)
Q Consensus 427 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 489 (664)
++++.. |+...+..+...|... |++++|++.+++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 777653 4566677777777777 77778888887777765 45667777777777777 7888
Q ss_pred HHHHHHHHHHhCCCC--cCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 006010 490 EARMVWTQMLSRGCK--PDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLL 567 (664)
Q Consensus 490 ~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 567 (664)
+|...|++.++.... -+...|..+..+|...|++++|...|++++...+. +...+..+..++...|++++|+..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA---WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888875210 36678888888888888888888888888766555 5667778888888888888887755
Q ss_pred HHH
Q 006010 568 NSM 570 (664)
Q Consensus 568 ~~~ 570 (664)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 443
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=1e-12 Score=126.83 Aligned_cols=175 Identities=11% Similarity=0.093 Sum_probs=132.4
Q ss_pred CChhHHHHHHHHHHhCCCcchHHHHHHHHHhC-------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC-----
Q 006010 81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRRE-------KRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEF----- 148 (664)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 148 (664)
....++..+...+...|++++|...++.+.+. ..+....++..++..|...|++++|++.|++.+...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34568888999999999999999999998873 334456678899999999999999999999987641
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccC---CC-CcCHHHHHHHHHHHHhcCChhHHHHHHhhcccC--
Q 006010 149 -HCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHM---NI-LPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVR-- 221 (664)
Q Consensus 149 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-- 221 (664)
..+....++..++..+...|++++|...|+++.+.... +. +.....+..+...+...|++++|++.|+++...
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 22334678889999999999999999999998762100 11 123446777788888888888888888877653
Q ss_pred ----C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006010 222 ----N-CEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQV 255 (664)
Q Consensus 222 ----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 255 (664)
+ .+....++..+...+...|++++|...++++..
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 122344677778888888888888888887765
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=1.4e-10 Score=115.24 Aligned_cols=233 Identities=8% Similarity=0.015 Sum_probs=158.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--C---C-CCHHHH
Q 006010 372 TLISGLFKEGKAEDAMKLWKQMMEKGC-KPN----TVVYSALIDGLCRVGKPDEAEEILFEMINNG--C---A-ANAFTY 440 (664)
Q Consensus 372 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~ 440 (664)
.....+...|++++|+..+++..+... .++ ..++..+...|...|+++.|...+.++.+.. . . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556678888888888888765311 112 3466677778888888888888888776531 0 1 124566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHh-----CCCCcCHHhH
Q 006010 441 SSLMKGFFESGKGHKAVEIWKDMAKN----NCV-YNEVCYSVLIHGLCEDGKLREARMVWTQMLS-----RGCKPDVVAY 510 (664)
Q Consensus 441 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 510 (664)
..+...|...|++++|.+.+++..+. +.+ ....++..+...|...|++++|...+++.++ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 77888888889999888888877652 111 1234677788888999999999999988876 32 2235678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhcCCCCC-C-CHhHHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006010 511 SSMIHGLCNAGSVEEALKLFNEMLCLEPKSQ-P-DVFTYNILLNALCKQSN---ISHSIDLLNSMMDRGCDPDLVTCNIF 585 (664)
Q Consensus 511 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l 585 (664)
..++..+.+.|++++|...+++++....... + ....+..+...+...|+ +.+|+..+++. +..|+...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~- 340 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACAR- 340 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHH-
Confidence 8889999999999999999999876543221 1 22345555566667777 67777777662 22333222221
Q ss_pred HHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHH
Q 006010 586 LTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQ 628 (664)
Q Consensus 586 l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (664)
.++.+|...|++++|.++++++.+
T Consensus 341 -------------------~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 -------------------SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp -------------------HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344459999999999999998875
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=9e-11 Score=116.60 Aligned_cols=234 Identities=9% Similarity=-0.076 Sum_probs=170.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----C-CCHHHH
Q 006010 407 ALIDGLCRVGKPDEAEEILFEMINNGC-AA----NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNC-----V-YNEVCY 475 (664)
Q Consensus 407 ~li~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~ 475 (664)
.....+...|++++|...++++.+... .+ ...++..+...|...|+++.|...+++..+... . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345567789999999999999986521 11 245778889999999999999999998775311 1 124477
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhC----CCCc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC--CCCCCHhHHH
Q 006010 476 SVLIHGLCEDGKLREARMVWTQMLSR----GCKP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEP--KSQPDVFTYN 548 (664)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~ 548 (664)
+.+...|...|++++|.+.+++.++. +-.+ ...++..++.+|...|++++|...+++++.... +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 88999999999999999999988753 1111 135778899999999999999999999964211 1112356788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCC---cchHHHH
Q 006010 549 ILLNALCKQSNISHSIDLLNSMMDRGC---DPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQR---TSGGFKI 622 (664)
Q Consensus 549 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~ 622 (664)
.+...+.+.|++++|...+++..+... .|........+ +..+...|+ +++|..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l--------------------~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFL--------------------QAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHH--------------------HHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------HHHHhCCCcHHHHHHHHHH
Confidence 889999999999999999999987422 22222222222 223777777 7777777
Q ss_pred HHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 623 VEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
+++.. ..+.....+..++..+...|++++|.+.+.+.+
T Consensus 326 ~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 326 FEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77631 112234677889999999999999999988764
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=3.2e-10 Score=112.44 Aligned_cols=277 Identities=12% Similarity=-0.029 Sum_probs=177.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH----HHHH
Q 006010 336 GTIINGLVKLGRAVDGARVLMSMEERKFHVNEY----IYSTLISGLFKEGKAEDAMKLWKQMMEKGC-KPNT----VVYS 406 (664)
Q Consensus 336 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~ 406 (664)
......+...|++++|...+++........+.. .++.+...+...|++++|...+++...... ..+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455667889999999988877754332322 456666778888999999988888765311 1122 2345
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCHHHH
Q 006010 407 ALIDGLCRVGKPDEAEEILFEMINN----GCA--A-NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCV----YNEVCY 475 (664)
Q Consensus 407 ~li~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~ 475 (664)
.+...+...|++++|...+++.++. +.. + ....+..+...+...|++++|...+++....... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 5667788889999998888887653 211 2 2345566777888888899888888887764321 123456
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHH-----HHHHHHHHcCCHHHHHHHHHHhhhcCCCCC-CCHhHHH
Q 006010 476 SVLIHGLCEDGKLREARMVWTQMLSRGCKPD-VVAYS-----SMIHGLCNAGSVEEALKLFNEMLCLEPKSQ-PDVFTYN 548 (664)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~ 548 (664)
..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|..++++++...++.. .....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 6777788888888888888888765311111 11121 223446788888888888888843222110 1122456
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHH
Q 006010 549 ILLNALCKQSNISHSIDLLNSMMDRGCDP-DLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVML 627 (664)
Q Consensus 549 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (664)
.+...+...|++++|...++++.+..... ..... . ..+..++.++...|++++|...+++..
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~---~--------------~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDL---N--------------RNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH---H--------------HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhH---H--------------HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66778888888888888888887531111 11111 0 011234556888888888888888887
Q ss_pred Hc
Q 006010 628 QK 629 (664)
Q Consensus 628 ~~ 629 (664)
+.
T Consensus 321 ~~ 322 (373)
T 1hz4_A 321 KL 322 (373)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=5.5e-10 Score=110.78 Aligned_cols=238 Identities=11% Similarity=0.015 Sum_probs=116.6
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH----HHHH
Q 006010 87 YSLIQHYANSGDFKSLEMVLYRMRREKRVVLEK----SFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTV----KSFN 158 (664)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~ 158 (664)
......+...|+++.|...+++.....+..+.. ++..+...+...|++++|.+.+++.........+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334455666777777777777766654332222 34555666667777777777777655421111222 2345
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhcccC-CCC--c-CHHHHHHHHHHHHhcCChhHHHHHHhhcccCCC----CCCHHHH
Q 006010 159 SVLNVIIQEGLYHRALEFYNHIVNAKHM-NIL--P-NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNC----EPDIYTY 230 (664)
Q Consensus 159 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~ 230 (664)
.+...+...|++++|...+++..+.... +.. | ....+..+...+...|++++|...+++.....- .....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 5666666777777777777666542110 110 1 122444455556666666666666665443210 0112345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCC-C-HHHHH----HHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHH
Q 006010 231 CTLMDGLCKENRLDEAVLLLDEMQVDGCFP-T-PVTFN----VLINGLCKNGELGRAAKLVDNMFLKGCLP---NEVTYN 301 (664)
Q Consensus 231 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~-~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~g~~p---~~~~~~ 301 (664)
..+...+...|++++|...+++.......+ . ..... ..+..+...|++++|...+++.......+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 555555556666666666665544321000 0 11111 12223445555555555555543321110 011233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 006010 302 TLIHGLCLKGNLDKAVSLLDRMV 324 (664)
Q Consensus 302 ~l~~~~~~~g~~~~a~~~~~~~~ 324 (664)
.+...+...|++++|...+++..
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444445555555555554443
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=1e-10 Score=124.14 Aligned_cols=165 Identities=17% Similarity=0.114 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006010 402 TVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHG 481 (664)
Q Consensus 402 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (664)
..+++.+...+.+.|++++|+..|+++++.. +.+...+..+..+|.+.|++++|++.|++..+.. +.+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4456666666666666666666666666653 4455666666666666666666666666666554 3445566666666
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChh
Q 006010 482 LCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNIS 561 (664)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 561 (664)
+...|++++|++.|++.++.. +-+..+|..+..+|...|++++|+..|+++++.+++ +...|..+..++...|+++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~---~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD---FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHhhhhhHHHhcccHH
Confidence 666666666666666666532 123455666666666666666666666666554444 4555666666666666666
Q ss_pred HHHHHHHHHHH
Q 006010 562 HSIDLLNSMMD 572 (664)
Q Consensus 562 ~A~~~~~~~~~ 572 (664)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=1.5e-10 Score=123.02 Aligned_cols=165 Identities=20% Similarity=0.132 Sum_probs=150.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010 366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMK 445 (664)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 445 (664)
+...++.+...+.+.|++++|+..|++..+.... +..++..+..+|.+.|++++|+..|+++++.. +.+...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 5678999999999999999999999999987533 67889999999999999999999999999875 667899999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCc-CHHhHHHHHHHHHHcCCHH
Q 006010 446 GFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKP-DVVAYSSMIHGLCNAGSVE 524 (664)
Q Consensus 446 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 524 (664)
+|...|++++|++.|++..+.. +.+...|..+...|...|++++|++.|++.++. .| +...+..++.++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999876 567889999999999999999999999999986 45 4678999999999999999
Q ss_pred HHHHHHHHhhh
Q 006010 525 EALKLFNEMLC 535 (664)
Q Consensus 525 ~A~~~~~~~~~ 535 (664)
+|.+.++++++
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999854
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=3.2e-10 Score=99.67 Aligned_cols=163 Identities=13% Similarity=0.082 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006010 404 VYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLC 483 (664)
Q Consensus 404 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 483 (664)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444555556666666666666655442 3455556666666666666666666666665543 345556666666666
Q ss_pred cCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHH
Q 006010 484 EDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHS 563 (664)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 563 (664)
..|++++|.+.++++.... +.+...+..++..+...|++++|..++++++...+. +...+..+...+...|++++|
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN---EGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHcCCHHHH
Confidence 6677777777776666542 334556666677777777777777777777544332 455666677777777777777
Q ss_pred HHHHHHHHH
Q 006010 564 IDLLNSMMD 572 (664)
Q Consensus 564 ~~~~~~~~~ 572 (664)
...++++.+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777665
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=6.5e-10 Score=101.52 Aligned_cols=207 Identities=11% Similarity=-0.047 Sum_probs=147.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010 400 PNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLI 479 (664)
Q Consensus 400 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 479 (664)
.|+..+......+...|++++|...|+++++...+++...+..+..++...|++++|++.+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35677778888888899999999999988887533677777778888889999999999999888866 44566788888
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCcCH-------HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCC---HhHHHH
Q 006010 480 HGLCEDGKLREARMVWTQMLSRGCKPDV-------VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPD---VFTYNI 549 (664)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~ 549 (664)
..+...|++++|...+++.++.. +.+. ..|..+...+...|++++|+..|++++. ..|+ ...|..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD----VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----SSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh----cCCCcccHHHHHH
Confidence 88889999999999998888753 2233 4577778888888999999999998853 2333 356666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 550 LLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 550 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
+..+|...| ...++++...+ ..+...+.... ....+.+++|...++++.+.
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~-----------------------~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK-----------------------AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHhhc
Confidence 777765543 34455555532 22233332222 33456689999999999985
Q ss_pred CCCC-ChHHHHHHHH
Q 006010 630 FLSP-QTSTWERVVQ 643 (664)
Q Consensus 630 ~~~~-~~~~~~~l~~ 643 (664)
.| ++.+...+..
T Consensus 210 --~p~~~~~~~~l~~ 222 (228)
T 4i17_A 210 --SPNRTEIKQMQDQ 222 (228)
T ss_dssp --CTTCHHHHHHHHH
T ss_pred --CCCCHHHHHHHHH
Confidence 44 4455544443
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=7.8e-10 Score=101.02 Aligned_cols=207 Identities=10% Similarity=0.043 Sum_probs=129.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010 366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMK 445 (664)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 445 (664)
+...+......+...|++++|+..|++..+....++...+..+..++...|++++|...+++.++.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3455666666666777777777777776665433455566666667777777777777777777654 445566667777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC---HHhHHHHHH
Q 006010 446 GFFESGKGHKAVEIWKDMAKNNCVYNE-------VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD---VVAYSSMIH 515 (664)
Q Consensus 446 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~ 515 (664)
.|...|++++|++.+++..+.. +.+. ..|..+...+...|++++|.+.|+++++. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 7777777777777777776654 3333 34666777777888888888888888774 454 356666666
Q ss_pred HHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010 516 GLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTA 588 (664)
Q Consensus 516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 588 (664)
+|... +..+++++...... +...|.... ....+.+++|+..+++..+ +.|+......++..
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~---~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASS---NKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTT---CHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcccC---CHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHHH
Confidence 66543 33445555322211 233333332 2345667888888888887 56766555444443
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=3.9e-10 Score=99.12 Aligned_cols=163 Identities=14% Similarity=0.003 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHH
Q 006010 120 SFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVI 199 (664)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll 199 (664)
.+..++..+...|++++|++.|+.+... .+.+...+..++..+...|++++|...++++.+. .+.+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~a 83 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD----APDNVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHH
Confidence 4445555566666666666666665432 2334555666666666666666666666666542 112344555555
Q ss_pred HHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 006010 200 KTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELG 279 (664)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (664)
..+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|+++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHH
Confidence 55555555666555555554442 3344555555555555555555555555554432 223445555555555555555
Q ss_pred HHHHHHHHHHH
Q 006010 280 RAAKLVDNMFL 290 (664)
Q Consensus 280 ~a~~~~~~~~~ 290 (664)
+|...++++..
T Consensus 162 ~A~~~~~~~~~ 172 (186)
T 3as5_A 162 EALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=4.5e-11 Score=113.36 Aligned_cols=206 Identities=15% Similarity=0.047 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC------CC
Q 006010 437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKN------N-CVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSR------GC 503 (664)
Q Consensus 437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~ 503 (664)
..++..+...|...|++++|...++++.+. + .+....++..+...+...|++++|...+++++.. .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 445566666666667777766666665543 1 1223446677777778888888888887777653 11
Q ss_pred Cc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcC----CCCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHC----
Q 006010 504 KP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLE----PKSQP-DVFTYNILLNALCKQSNISHSIDLLNSMMDR---- 573 (664)
Q Consensus 504 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 573 (664)
.| ...++..+...+...|++++|..++++++... .+..| ....+..+...|...|++++|...++++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 12 34677788888888899999998888886431 01122 3456778888889999999999999888852
Q ss_pred ---CCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchH------HHHHHHHHHcCCCCChHHHHHHHHH
Q 006010 574 ---GCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGG------FKIVEVMLQKFLSPQTSTWERVVQE 644 (664)
Q Consensus 574 ---~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~~~~~~~~~~~~~~~~l~~~ 644 (664)
...+....+...+..+ +...+....+ ...++.... ..+.....+..++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~ 261 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEER--------------------EESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGAL 261 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHH--------------------HHTTCCCCC------------CCCC-CCHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHH--------------------HhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 1222222222222221 2222222222 222222111 011234678888999
Q ss_pred hcccchHHHHHHHHHhhhc
Q 006010 645 LCRPKRIQAAINKCWSNLY 663 (664)
Q Consensus 645 ~~~~g~~~~A~~~~~~~l~ 663 (664)
+...|++++|.+.+.+.+.
T Consensus 262 ~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 262 YRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999887653
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=1.7e-10 Score=109.25 Aligned_cols=231 Identities=11% Similarity=0.014 Sum_probs=145.0
Q ss_pred hCCCcchHHHHHHHHHh-------CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC------CCCCCHHHHHHHH
Q 006010 95 NSGDFKSLEMVLYRMRR-------EKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEF------HCKRTVKSFNSVL 161 (664)
Q Consensus 95 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~ 161 (664)
..|+++.|...++++.. .+.+....++..++..|...|++++|+..|++.++.. ..+....++..++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555666555555554 2323345567788888888888888888888876541 1233456788888
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcccC---C-CCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccC------C-CCCCHHHH
Q 006010 162 NVIIQEGLYHRALEFYNHIVNAKHM---N-ILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVR------N-CEPDIYTY 230 (664)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~---~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~ 230 (664)
..+...|++++|...|+++.+.... . .+....++..+...+...|++++|.+.|++..+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888888888888888887662100 0 1123457777888888888888888888887654 1 12235577
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHH------HHHHHHHcCCCCC
Q 006010 231 CTLMDGLCKENRLDEAVLLLDEMQVD-------GCFPT-PVTFNVLINGLCKNGELGRAAK------LVDNMFLKGCLPN 296 (664)
Q Consensus 231 ~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~-~~~~~~li~~~~~~g~~~~a~~------~~~~~~~~g~~p~ 296 (664)
..+..+|...|++++|...++++... ...+. ...|..+...+...+....+.. .++.... ..+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 88888888999999999888887653 11122 2233333333333333222222 2221110 11123
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006010 297 EVTYNTLIHGLCLKGNLDKAVSLLDRMVAS 326 (664)
Q Consensus 297 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 326 (664)
..++..+...|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778888999999999999999887753
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=1.3e-09 Score=103.69 Aligned_cols=201 Identities=13% Similarity=0.048 Sum_probs=120.3
Q ss_pred HHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHH
Q 006010 377 LFKEGKAEDAMKLWKQMMEK----GCKP-NTVVYSALIDGLCRVGKPDEAEEILFEMINN----GCAA-NAFTYSSLMKG 446 (664)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~ 446 (664)
|...|++++|+..|++..+. |-.+ ...+|..+..+|...|++++|+..+++.++. |... ...++..+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555544332 1111 1234555555666666666666666655442 1000 13456677777
Q ss_pred HHhc-CChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCH------HhHHHHH
Q 006010 447 FFES-GKGHKAVEIWKDMAKNNCVY-N----EVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDV------VAYSSMI 514 (664)
Q Consensus 447 ~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~ 514 (664)
|... |++++|+..+++..+..... + ..++..+...+...|++++|+..|++..+....... ..|..++
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 8885 88888888888776632111 1 346778888899999999999999998875322211 1567778
Q ss_pred HHHHHcCCHHHHHHHHHHhhhcCCCCCCC--HhHHHHHHHHHH--HcCChhHHHHHHHHHHHCCCCCCH
Q 006010 515 HGLCNAGSVEEALKLFNEMLCLEPKSQPD--VFTYNILLNALC--KQSNISHSIDLLNSMMDRGCDPDL 579 (664)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p~~ 579 (664)
.++...|++++|...|++++...+..... ...+..++.++. ..+++++|+..|+++.. +.|+.
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~~ 273 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKWK 273 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHHH
Confidence 88889999999999999997555543221 113344555554 34567888888877654 45544
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.18 E-value=1.9e-08 Score=93.20 Aligned_cols=187 Identities=10% Similarity=0.026 Sum_probs=126.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006010 386 AMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGC-AANAFTYSSLMKGFFESGKGHKAVEIWKDMA 464 (664)
Q Consensus 386 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 464 (664)
|+..+++..+.+ .++..++..+..++...|++++|++++.+.+..+. ..+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777766554 34555556777778888888888888888876642 2466777788888888888888888888887
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHc--CCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 006010 465 KNNCVY-----NEVCYSVLIHG--LCE--DGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLC 535 (664)
Q Consensus 465 ~~~~~~-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (664)
+.. | +..+...++.+ ... .++..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+++
T Consensus 164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 754 4 24444444444 222 34888899999988764 45533334444478888999999999887643
Q ss_pred cCCCC-------CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 006010 536 LEPKS-------QPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT 581 (664)
Q Consensus 536 ~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 581 (664)
..+.. ..|..++..++......|+ +|.+++.++.+ ..|+...
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~ 288 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAF 288 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChH
Confidence 32110 2255566556656666676 78888888887 6677653
No 89
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.17 E-value=6.4e-08 Score=98.54 Aligned_cols=358 Identities=9% Similarity=-0.013 Sum_probs=197.3
Q ss_pred CCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCC-hhHHHHHHhhcccC-CC-CCCHHHHHHHHHHHH----hc
Q 006010 168 GLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGL-VDNAIQLFREMPVR-NC-EPDIYTYCTLMDGLC----KE 240 (664)
Q Consensus 168 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~ 240 (664)
|+++.+..+|++.+. ..|+...|...+....+.++ .+....+|+..... |. +.+...|...+..+. ..
T Consensus 28 ~~~e~~~~iferal~-----~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~ 102 (493)
T 2uy1_A 28 KDYRSLESLFGRCLK-----KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ 102 (493)
T ss_dssp TCHHHHHHHHHHHST-----TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH
T ss_pred CCHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh
Confidence 667777777777765 23566666666666655553 34455566555432 21 234556666665443 23
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 006010 241 NRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLL 320 (664)
Q Consensus 241 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 320 (664)
|+.+.+..+|++........-...|......- +......+..++.+. .+.+..|..++
T Consensus 103 ~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~---------------------~~~y~~ar~~y 160 (493)
T 2uy1_A 103 TRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDT---------------------LPIFQSSFQRY 160 (493)
T ss_dssp HHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHH---------------------hHHHHHHHHHH
Confidence 45666666777666531111111222221111 111111122222111 11223334444
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcC--C-----hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006010 321 DRMVASKCMPNEVTYGTIINGLVKLG--R-----AVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQM 393 (664)
Q Consensus 321 ~~~~~~~~~~~~~~~~~ll~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 393 (664)
+.+...--..+...|...+..-...+ - .+.+..+++++....+. +...|...+..+.+.|+.+.|..++++.
T Consensus 161 ~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erA 239 (493)
T 2uy1_A 161 QQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERG 239 (493)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43332100012334544444322211 0 23455677777765433 5677777777788888888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC------------CCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006010 394 MEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNG------------CAANAFTYSSLMKGFFESGKGHKAVEIWK 461 (664)
Q Consensus 394 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 461 (664)
... +.+...+. .|....+.++. ++.+.+.- .......|...+....+.++.+.|..+|+
T Consensus 240 i~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~ 310 (493)
T 2uy1_A 240 IEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFI 310 (493)
T ss_dssp HHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 877 22322222 22222122222 22222110 01112456667777777888999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHc-CCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCC
Q 006010 462 DMAKNNCVYNEVCYSVLIHGLCE-DGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKS 540 (664)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 540 (664)
++ ... ..+...|...+..-.. .++.+.|..+|+..++.. +-+...|...++...+.|+.+.|..+|+++ .
T Consensus 311 ~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~--~---- 381 (493)
T 2uy1_A 311 EL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL--E---- 381 (493)
T ss_dssp HH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS--C----
T ss_pred Hh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--H----
Confidence 99 322 2344445433322222 336999999999998753 223455667788788899999999999998 2
Q ss_pred CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 541 QPDVFTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 541 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
.....|...+..-...|+.+.+..+++++.+
T Consensus 382 -k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 -KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1567888888877888999999999988874
No 90
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.16 E-value=6.8e-08 Score=98.36 Aligned_cols=124 Identities=12% Similarity=0.101 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006010 403 VVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFES-GKGHKAVEIWKDMAKNNCVYNEVCYSVLIHG 481 (664)
Q Consensus 403 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (664)
..|...+....+.++.+.|..+|+.+ +.. ..+...|...+..-... ++.+.|..+|+...+.. +.+...+...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45666666666777889999999888 322 23444454333322223 36899999999888754 3345556667777
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhh
Q 006010 482 LCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEML 534 (664)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (664)
....|+.+.|..+|+.+. .....|...+..-...|+.+.+..++++++
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778899999999998873 246778888887788899999999888885
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=2.8e-09 Score=99.60 Aligned_cols=195 Identities=12% Similarity=0.063 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC-CcC-HHhHH
Q 006010 437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYN---EVCYSVLIHGLCEDGKLREARMVWTQMLSRGC-KPD-VVAYS 511 (664)
Q Consensus 437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~~~ 511 (664)
...+..+...+.+.|++++|+..|+.+.+.. |.+ ...+..+..++...|++++|...|+++++... .|. ..++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444444444555555555555555554433 112 33444455555555555555555555554311 111 23344
Q ss_pred HHHHHHHH--------cCCHHHHHHHHHHhhhcCCCCCCCHhH--------------HHHHHHHHHHcCChhHHHHHHHH
Q 006010 512 SMIHGLCN--------AGSVEEALKLFNEMLCLEPKSQPDVFT--------------YNILLNALCKQSNISHSIDLLNS 569 (664)
Q Consensus 512 ~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~g~~~~A~~~~~~ 569 (664)
.+..++.. .|++++|+..|++++...|+...-... +..+...|.+.|++++|+..|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44555555 555566666655554433331111111 25667889999999999999999
Q ss_pred HHHCCCCCCHH----HHHHHHHhhhhhccCCCCchhhhHHHHHHhhhc----------CCcchHHHHHHHHHHcCCCCCh
Q 006010 570 MMDRGCDPDLV----TCNIFLTALKEKLEAPQDGTDFLNELAIRLFKR----------QRTSGGFKIVEVMLQKFLSPQT 635 (664)
Q Consensus 570 ~~~~~~~p~~~----~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~ 635 (664)
+++ ..|+.. .+..+... |... |++++|...++++.+. .|+.
T Consensus 174 ~l~--~~p~~~~~~~a~~~l~~~---------------------~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 174 VFD--AYPDTPWADDALVGAMRA---------------------YIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHH--HCTTSTTHHHHHHHHHHH---------------------HHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHH--HCCCCchHHHHHHHHHHH---------------------HHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 997 345422 22222222 5544 8999999999999985 3433
Q ss_pred ----HHHHHHHHHhcccchHHHHHHH
Q 006010 636 ----STWERVVQELCRPKRIQAAINK 657 (664)
Q Consensus 636 ----~~~~~l~~~~~~~g~~~~A~~~ 657 (664)
.....+...+...|+++++...
T Consensus 229 ~~~~~a~~~l~~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTELEGDASL 254 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4455566666777777665543
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=2.1e-09 Score=100.42 Aligned_cols=193 Identities=10% Similarity=0.012 Sum_probs=122.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHH
Q 006010 366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPN---TVVYSALIDGLCRVGKPDEAEEILFEMINNGC--AANAFTY 440 (664)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 440 (664)
+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..++...|++++|...|+.+++... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4555666666777777777777777777765322 2 45566666677777777777777777776421 1223455
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHH
Q 006010 441 SSLMKGFFE--------SGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSS 512 (664)
Q Consensus 441 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 512 (664)
..+..++.. .|++++|+..|+++.+.. |.+......+. .+..+... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~--------------~~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQ--------------KIRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHH--------------HHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHH--------------HHHHHHHH----HHHHHHH
Confidence 556666666 667777777777666644 11222111111 11111000 0112466
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc----------CChhHHHHHHHHHHHCCCCCCHH
Q 006010 513 MIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ----------SNISHSIDLLNSMMDRGCDPDLV 580 (664)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~ 580 (664)
++..|...|++++|+..|++++...|........+..+..+|... |++++|...++++++ ..|+..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~ 229 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDSP 229 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTCT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCCh
Confidence 788899999999999999999876665444456777888888766 889999999999997 456654
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.10 E-value=2.3e-09 Score=96.04 Aligned_cols=138 Identities=12% Similarity=0.151 Sum_probs=92.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHH
Q 006010 477 VLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCK 556 (664)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 556 (664)
.+..++...|++++|...|++.++.. +-+...+..+..++...|++++|+..|++++..+|. +...|..+..+|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD---NLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHH
Confidence 37778888888888888888888753 235677888888888888888888888888776665 66778788777765
Q ss_pred cCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCC
Q 006010 557 QSN--ISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQ 634 (664)
Q Consensus 557 ~g~--~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 634 (664)
.|+ .+.+...+++.. .|+...+..... +.++...|++++|...|+++++ +.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~-------------------g~~~~~~~~~~~A~~~~~~al~--l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS----SPTKMQYARYRD-------------------GLSKLFTTRYEKARNSLQKVIL--RFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC-------CCCHHHHHHHHH-------------------HHHHHHHHTHHHHHHHHHHHTT--TSCC
T ss_pred HhHHHHHHHHHHHHHHh----CCCchhHHHHHH-------------------HHHHHHccCHHHHHHHHHHHHH--hCCC
Confidence 543 344555555543 344333221111 1226678888889999988886 4677
Q ss_pred hHHHHHHHH
Q 006010 635 TSTWERVVQ 643 (664)
Q Consensus 635 ~~~~~~l~~ 643 (664)
......+.+
T Consensus 190 ~~~~~~l~~ 198 (208)
T 3urz_A 190 TEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655444433
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.06 E-value=1.5e-07 Score=87.21 Aligned_cols=180 Identities=9% Similarity=0.066 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 006010 281 AAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKC-MPNEVTYGTIINGLVKLGRAVDGARVLMSME 359 (664)
Q Consensus 281 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 359 (664)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444443332 22333334444455555555555555555443321 1133344444455555555555555555554
Q ss_pred HcCCCC-----CHHHHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006010 360 ERKFHV-----NEYIYSTLISG--LFKEG--KAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMIN 430 (664)
Q Consensus 360 ~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 430 (664)
+. .| +..+...++.+ ....| ++++|..+|+++.+. .|+..+...++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 12 12333333333 11122 555555555555443 22322222233355555666666655554433
Q ss_pred CC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006010 431 NG---------CAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNN 467 (664)
Q Consensus 431 ~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 467 (664)
.. -+.++.++..++......|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 10 02344444344444444444 4555555555543
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=6.3e-09 Score=98.85 Aligned_cols=97 Identities=7% Similarity=0.090 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----HHH
Q 006010 86 FYSLIQHYANSGDFKSLEMVLYRMRRE----KRVV-LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT----VKS 156 (664)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~ 156 (664)
|...+..+...|++++|...|.++... +.+. ...++..+..+|...|++++|+..|++.+.......+ ..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333344555555566555555555432 1111 1234555555555555555555555554432111111 234
Q ss_pred HHHHHHHHHHc-CCHhHHHHHHHHHHh
Q 006010 157 FNSVLNVIIQE-GLYHRALEFYNHIVN 182 (664)
Q Consensus 157 ~~~l~~~~~~~-~~~~~A~~~~~~~~~ 182 (664)
++.+...|... |++++|+..|++.++
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 44455555553 555555555555443
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.04 E-value=1.3e-08 Score=91.00 Aligned_cols=171 Identities=11% Similarity=0.095 Sum_probs=98.2
Q ss_pred ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHhh
Q 006010 82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIF----------------IFKAYGKAHLVEEAIRLFHTMV 145 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~ 145 (664)
+...+......+...|++++|...|+.+...++. +..++.. ++.+|.+.|++++|+..|++.+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445566666777888888888888888776532 4445555 6666667777777777776665
Q ss_pred hcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCc-CHHHHHHHHHHHHhcCC--hhHHHHHHhhcccCC
Q 006010 146 DEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILP-NTLTFNLVIKTVCRLGL--VDNAIQLFREMPVRN 222 (664)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~--~~~A~~~~~~~~~~~ 222 (664)
+. .|.++..+..++..+...|++++|...|+++++. .| +..++..+..+|...|+ .+.+...++.....
T Consensus 82 ~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~- 153 (208)
T 3urz_A 82 QK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL-----EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP- 153 (208)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-
T ss_pred HH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC-
Confidence 54 3445666666677777777777777777776662 22 34455555555544432 33344445444321
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 006010 223 CEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVT 264 (664)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 264 (664)
.|....+..+..++...|++++|...|++..+. .|+...
T Consensus 154 -~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 154 -TKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp -CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred -CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 222223333444455556666666666666553 355433
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.03 E-value=1.6e-09 Score=91.15 Aligned_cols=144 Identities=12% Similarity=0.005 Sum_probs=99.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHH
Q 006010 478 LIHGLCEDGKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCK 556 (664)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 556 (664)
|...+...|++++|++.++..... .|+ ...+..+...|.+.|++++|++.|+++++.+|. +...|..+..+|.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER---DPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Confidence 344455667788888888877653 343 345667788888888888888888888776665 67788888888888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHH-HHHHHHcCCCCC
Q 006010 557 QSNISHSIDLLNSMMDRGCDPDLVT-CNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKI-VEVMLQKFLSPQ 634 (664)
Q Consensus 557 ~g~~~~A~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~ 634 (664)
.|++++|+..|+++++ +.|+... +..+... |.+.|++++|.+. ++++.+. .+.+
T Consensus 78 ~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~---------------------~~~~~~~~~aa~~~~~~al~l-~P~~ 133 (150)
T 4ga2_A 78 EENTDKAVECYRRSVE--LNPTQKDLVLKIAEL---------------------LCKNDVTDGRAKYWVERAAKL-FPGS 133 (150)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH---------------------HHHHCSSSSHHHHHHHHHHHH-STTC
T ss_pred cCchHHHHHHHHHHHH--hCCCCHHHHHHHHHH---------------------HHHcCChHHHHHHHHHHHHHh-CcCC
Confidence 8888888888888887 5665433 3333333 7888888776654 5777764 2345
Q ss_pred hHHHHHHHHHhcccch
Q 006010 635 TSTWERVVQELCRPKR 650 (664)
Q Consensus 635 ~~~~~~l~~~~~~~g~ 650 (664)
+.+|......+...|+
T Consensus 134 ~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 134 PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 6777776766666653
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.01 E-value=3e-09 Score=113.67 Aligned_cols=174 Identities=9% Similarity=-0.054 Sum_probs=132.6
Q ss_pred HhcCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006010 378 FKEGKAEDAMKLWKQMM--------EKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFE 449 (664)
Q Consensus 378 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 449 (664)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|...|+++++.. +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67888888988888887 332 2355677778888888899999999998888764 5577888888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHH
Q 006010 450 SGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKL 529 (664)
Q Consensus 450 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 529 (664)
.|++++|++.|++..+.. +.+...+..+..++...|++++ .+.|+++++.. +.+...|..+..++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999888876 4566778888888888999988 88888888753 23467788888889999999999999
Q ss_pred HHHhhhcCCCCCCCHhHHHHHHHHHHHcCC
Q 006010 530 FNEMLCLEPKSQPDVFTYNILLNALCKQSN 559 (664)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 559 (664)
|+++++.++. +...|..+..++...|+
T Consensus 557 ~~~al~l~P~---~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH---FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT---HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc---cHHHHHHHHHHHHccCC
Confidence 9888543332 35566667777655444
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=1.4e-08 Score=83.43 Aligned_cols=127 Identities=17% Similarity=0.299 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc
Q 006010 441 SSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA 520 (664)
Q Consensus 441 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 520 (664)
..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++...+ +.+...+..++..+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 344444555555555555555554433 2344445555555555555555555555555432 22344555555555666
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 521 GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 521 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
|++++|..++++++...+. +...+..+...+...|++++|...++++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666655433222 344555555566666666666666666554
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.01 E-value=2.5e-07 Score=86.89 Aligned_cols=234 Identities=10% Similarity=0.061 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCh
Q 006010 383 AEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVG--KPDEAEEILFEMINNGCAANAFTYSSLMKGF----FES---GKG 453 (664)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 453 (664)
.++|+..++.++..+.. +..+|+.-...+...| +++++++.++.++... +.+..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 34566666666655322 3344555555555555 6666666666666543 33444443332222 333 566
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChH--HHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCC------HHH
Q 006010 454 HKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLR--EARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGS------VEE 525 (664)
Q Consensus 454 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 525 (664)
++++++++.+.+.. +.+..+|+.-...+...|.++ ++++.++++++.. .-|...|+.....+.+.|. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 77777777776655 556666666666666666666 7777777777654 2355666666666655555 777
Q ss_pred HHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhH-HHHHHHHHHHCC-CCCC-HHHHHHHHHhhhhhccCCCCchhh
Q 006010 526 ALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISH-SIDLLNSMMDRG-CDPD-LVTCNIFLTALKEKLEAPQDGTDF 602 (664)
Q Consensus 526 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~-~~p~-~~~~~~ll~~~~~~~~~~~~~~~~ 602 (664)
+++.+++++..++. |...|+.+...+.+.|+..+ +..+..++.+.+ ..|. ...+..
T Consensus 205 El~~~~~aI~~~p~---n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~------------------ 263 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ---NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALET------------------ 263 (306)
T ss_dssp HHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHH------------------
T ss_pred HHHHHHHHHHhCCC---CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHH------------------
Confidence 77777777766655 77777777777777776433 445556555422 1122 222222
Q ss_pred hHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHH
Q 006010 603 LNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQE 644 (664)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 644 (664)
++.++.+.|+.++|.++++.+.++--+.....|...+..
T Consensus 264 ---la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 264 ---LAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp ---HHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred ---HHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 223367777888888888887754223344566655544
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.01 E-value=3.9e-09 Score=112.84 Aligned_cols=160 Identities=12% Similarity=0.046 Sum_probs=117.4
Q ss_pred HhcCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 006010 413 CRVGKPDEAEEILFEMI--------NNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCE 484 (664)
Q Consensus 413 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 484 (664)
...|++++|++.+++++ +.. +.+...+..+...+...|++++|++.++++.+.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 66788888888888877 432 4556677777778888888888888888877765 4566777777778888
Q ss_pred CCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHH
Q 006010 485 DGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSI 564 (664)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 564 (664)
.|++++|.+.|+++++.. +-+...+..+..++.+.|++++ +..|+++++.++. +...|..+..++.+.|++++|+
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG---VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc---hHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888877652 2235667777778888888888 8888888765554 5667777778888888888888
Q ss_pred HHHHHHHHCCCCCCHHH
Q 006010 565 DLLNSMMDRGCDPDLVT 581 (664)
Q Consensus 565 ~~~~~~~~~~~~p~~~~ 581 (664)
..|+++.+ +.|+...
T Consensus 555 ~~~~~al~--l~P~~~~ 569 (681)
T 2pzi_A 555 RTLDEVPP--TSRHFTT 569 (681)
T ss_dssp HHHHTSCT--TSTTHHH
T ss_pred HHHHhhcc--cCcccHH
Confidence 88887776 5666443
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.00 E-value=2.9e-08 Score=90.11 Aligned_cols=186 Identities=11% Similarity=0.045 Sum_probs=129.7
Q ss_pred ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH-HHHH
Q 006010 82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVV--LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTV-KSFN 158 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ 158 (664)
++..+..+...+...|++++|...|+.+....+.. ...++..++.+|.+.|++++|+..|+++++..+..+.. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 56678888899999999999999999999865432 24678889999999999999999999998765444442 3555
Q ss_pred HHHHHHHH------------------cCCHhHHHHHHHHHHhcccCCCCcCHH-HHHHHHHHHHhcCChhHHHHHHhhcc
Q 006010 159 SVLNVIIQ------------------EGLYHRALEFYNHIVNAKHMNILPNTL-TFNLVIKTVCRLGLVDNAIQLFREMP 219 (664)
Q Consensus 159 ~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~ 219 (664)
.++.++.+ .|++++|...|+++++. .|+.. ........ + .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l----~------~~~~~~- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRL----V------FLKDRL- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHH----H------HHHHHH-
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHH----H------HHHHHH-
Confidence 56666554 45677777777777762 23221 11111100 0 000000
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006010 220 VRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPT----PVTFNVLINGLCKNGELGRAAKLVDNMFLKG 292 (664)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 292 (664)
......+...|.+.|++++|+..|+++.+.. |+ ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 147 -------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1122356778888999999999999988753 33 2567788889999999999999999887764
No 103
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=2.9e-08 Score=81.53 Aligned_cols=128 Identities=16% Similarity=0.247 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 006010 405 YSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCE 484 (664)
Q Consensus 405 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 484 (664)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3444555555566666666666555543 3345555555666666666666666666665544 3445556666666666
Q ss_pred CCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 006010 485 DGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLC 535 (664)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (664)
.|++++|...++++.... +.+...+..++..+...|++++|...+++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 777777777776666542 23455666666677777777777777776643
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.99 E-value=5e-07 Score=84.80 Aligned_cols=227 Identities=10% Similarity=0.012 Sum_probs=144.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CChh
Q 006010 349 VDGARVLMSMEERKFHVNEYIYSTLISGLFKEG--KAEDAMKLWKQMMEKGCKPNTVVYSALIDGL----CRV---GKPD 419 (664)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---~~~~ 419 (664)
++|++..+.+...++. +..+|+.-..++...+ ++++++..++.+.....+ +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4566666666665444 4555665555555566 677777777766665433 344444433333 333 5677
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC------hHHH
Q 006010 420 EAEEILFEMINNGCAANAFTYSSLMKGFFESGKGH--KAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGK------LREA 491 (664)
Q Consensus 420 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A 491 (664)
+++.+++.+++.. +.+..+|+.-.-.+.+.|.++ ++++.++.+.+.+ +-|...|+.-...+...++ ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 7777777777654 556666666666666666666 7777777777765 4566677666666666665 7788
Q ss_pred HHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHH-HHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 006010 492 RMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVE-EALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSM 570 (664)
Q Consensus 492 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 570 (664)
++.+++++... +-|...|+.+...+.+.|+.. ++..+.++++........+...+..+...|.+.|+.++|+++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 88888887753 345677877777777777743 3555666664322112335667778888888888888888888888
Q ss_pred HHCCCCCCHHH
Q 006010 571 MDRGCDPDLVT 581 (664)
Q Consensus 571 ~~~~~~p~~~~ 581 (664)
.+. +.|...-
T Consensus 285 ~~~-~Dpir~~ 294 (306)
T 3dra_A 285 KSK-YNPIRSN 294 (306)
T ss_dssp HHT-TCGGGHH
T ss_pred Hhc-cChHHHH
Confidence 753 4554433
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=9.1e-08 Score=85.76 Aligned_cols=177 Identities=14% Similarity=0.045 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHH
Q 006010 385 DAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESG----KGHKAVEIW 460 (664)
Q Consensus 385 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 460 (664)
+|+..|++..+.| +...+..+...|...+++++|...|++..+.+ +...+..|...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566666666654 56666677777777778888888887777765 56666667777766 5 778888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHhCCCC-cCHHhHHHHHHHHHH----cCCHHHHHHHHH
Q 006010 461 KDMAKNNCVYNEVCYSVLIHGLCE----DGKLREARMVWTQMLSRGCK-PDVVAYSSMIHGLCN----AGSVEEALKLFN 531 (664)
Q Consensus 461 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 531 (664)
++..+.+ +...+..+...|.. .+++++|...|++..+.|.. .+...+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8877643 55666677777766 77888888888888876521 125677778888877 778888888888
Q ss_pred HhhhcCCCCCCCHhHHHHHHHHHHHc-C-----ChhHHHHHHHHHHHCCC
Q 006010 532 EMLCLEPKSQPDVFTYNILLNALCKQ-S-----NISHSIDLLNSMMDRGC 575 (664)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 575 (664)
++... ++ +...+..|...|... | ++++|..+|++..+.|.
T Consensus 154 ~A~~~-~~---~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL-SR---TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT-SC---TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc-CC---CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88532 12 444666677777653 3 78889998888887653
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.97 E-value=3e-09 Score=89.46 Aligned_cols=132 Identities=8% Similarity=-0.036 Sum_probs=89.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCH
Q 006010 444 MKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSV 523 (664)
Q Consensus 444 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 523 (664)
...+...|++++|+..++...... +.+...+-.+...|...|++++|.+.|++.++.. +-+..+|..+..+|...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 344555667777777777765533 2233445567777788888888888888877753 23466777888888888888
Q ss_pred HHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHH-HHHHHHCCCCCCHHHH
Q 006010 524 EEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDL-LNSMMDRGCDPDLVTC 582 (664)
Q Consensus 524 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~ 582 (664)
++|+..|+++++.+|. +...|..+...|.+.|++++|... ++++.+ +.|+....
T Consensus 82 ~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~ 136 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT---QKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAV 136 (150)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHH
T ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHH
Confidence 8888888888766554 566777778888888887766554 477776 56665443
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.96 E-value=4.8e-08 Score=88.66 Aligned_cols=190 Identities=9% Similarity=-0.025 Sum_probs=128.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCH-HH
Q 006010 117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT-VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNT-LT 194 (664)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~ 194 (664)
+...+..++..+...|++++|+..|++++...+..+. ..++..++.++.+.|++++|+..|+++++..+.. +.. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~--~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH--PNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--TTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC--CcHHHH
Confidence 4556778888899999999999999999876443333 4678889999999999999999999998743221 111 23
Q ss_pred HHHHHHHHHh------------------cCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006010 195 FNLVIKTVCR------------------LGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVD 256 (664)
Q Consensus 195 ~~~ll~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 256 (664)
+..+..++.. .|++++|...|+++.+.. +.+...+....... .+...+.
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~-- 147 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLA-- 147 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHH--
Confidence 4444444443 355666666666665542 22222222111100 0000000
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006010 257 GCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPN--EVTYNTLIHGLCLKGNLDKAVSLLDRMVASK 327 (664)
Q Consensus 257 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (664)
.....+...|.+.|++++|+..|+++.+..+... ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123467788999999999999999988733211 2568889999999999999999999998874
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.96 E-value=1.2e-08 Score=88.60 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=20.7
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006010 126 KAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHI 180 (664)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 180 (664)
..+...|++++|+..|++.++. .+.+...+..+...+.+.|++++|...|+.+
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 3333444444444444433322 1223333444444444444444444444433
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=2.6e-08 Score=94.16 Aligned_cols=162 Identities=16% Similarity=0.084 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHH-H
Q 006010 155 KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCT-L 233 (664)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l 233 (664)
..+..+...+.+.|++++|...|+++++..+ .+...+..+..++.+.|++++|...++++... .|+...... .
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSN----QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 3344444444444444444444444443111 12233444444444444444444444444433 122221111 1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 006010 234 MDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLP-NEVTYNTLIHGLCLKGN 312 (664)
Q Consensus 234 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 312 (664)
...+...++.++|...+++..... +.+...+..+...+...|++++|+..|+++....... +...+..++..+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 112333344444444444443332 2233444444444444444444444444444432111 12344444444444444
Q ss_pred hHHHHHHHHHH
Q 006010 313 LDKAVSLLDRM 323 (664)
Q Consensus 313 ~~~a~~~~~~~ 323 (664)
.++|...|++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 44444444443
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.93 E-value=3.1e-08 Score=93.67 Aligned_cols=167 Identities=13% Similarity=0.045 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 006010 401 NTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCY-SVLI 479 (664)
Q Consensus 401 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 479 (664)
+...+..+...+...|++++|...|+++++.. +.+...+..+...+...|++++|...++++.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 34455566666777777777777777777664 5566777777777777888888888777776654 343322 2223
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC
Q 006010 480 HGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN 559 (664)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 559 (664)
..+...++.++|...+++.+... +.+...+..+...+...|++++|...|++++..+++. .+...+..++..+...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~-~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA-ADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG-GGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-ccchHHHHHHHHHHHcCC
Confidence 33556677777888888777653 3356777888888888888888888888887655542 125567788888888888
Q ss_pred hhHHHHHHHHHHH
Q 006010 560 ISHSIDLLNSMMD 572 (664)
Q Consensus 560 ~~~A~~~~~~~~~ 572 (664)
.++|...+++...
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 8888888877653
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.90 E-value=2.4e-07 Score=82.97 Aligned_cols=163 Identities=12% Similarity=-0.027 Sum_probs=67.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCHHHHH
Q 006010 331 NEVTYGTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEG----KAEDAMKLWKQMMEKGCKPNTVVYS 406 (664)
Q Consensus 331 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 406 (664)
++..+..+...|...+++++|.++|++..+.+ +...+..+...|.. + ++++|+..|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 33344444444444444444444444444332 23333334433333 3 4444444444444332 333344
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006010 407 ALIDGLCR----VGKPDEAEEILFEMINNGCA-ANAFTYSSLMKGFFE----SGKGHKAVEIWKDMAKNNCVYNEVCYSV 477 (664)
Q Consensus 407 ~li~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 477 (664)
.+...|.. .+++++|..+|++..+.+.. ..+..+..|...|.. .++.++|...|++..+.+ .+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHH
Confidence 44444433 44445555555544444310 013444444444444 444455555555444431 22223333
Q ss_pred HHHHHHcC-C-----ChHHHHHHHHHHHhCC
Q 006010 478 LIHGLCED-G-----KLREARMVWTQMLSRG 502 (664)
Q Consensus 478 l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 502 (664)
|...|... | +.++|...|+...+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 44433321 1 4455555555444443
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=5.7e-08 Score=84.26 Aligned_cols=162 Identities=12% Similarity=0.035 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHH
Q 006010 156 SFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMD 235 (664)
Q Consensus 156 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 235 (664)
.+...+..+.+.|++++|...|+++++..+ .+...+..+..++.+.|++++|+..|+...... |+...+..+..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~ 81 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQ----SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAK 81 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHH----TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHH
Confidence 455666777778888888888887765221 245567777777888888888888888776653 24443332221
Q ss_pred H-HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCh
Q 006010 236 G-LCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLP-NEVTYNTLIHGLCLKGNL 313 (664)
Q Consensus 236 ~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 313 (664)
. +...++..+|+..+++..... +.+...+..+...+...|++++|...|+++....+.+ +...+..+...+...|+.
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 2 112223334566666666542 2245666667777777777777777777766653322 234566666677777777
Q ss_pred HHHHHHHHHHH
Q 006010 314 DKAVSLLDRMV 324 (664)
Q Consensus 314 ~~a~~~~~~~~ 324 (664)
++|...|++.+
T Consensus 161 ~~A~~~y~~al 171 (176)
T 2r5s_A 161 NAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77777766654
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=9.5e-08 Score=91.41 Aligned_cols=187 Identities=14% Similarity=-0.002 Sum_probs=112.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 006010 376 GLFKEGKAEDAMKLWKQMMEKGC---KP--NTVVYSALIDGLCRVGKPDEAEEILFEMINN----GCAA-NAFTYSSLMK 445 (664)
Q Consensus 376 ~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 445 (664)
.|...|++++|...|.+..+... .+ -..++..+...|...|++++|...|++.++. |.+. ...++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555554433210 00 1234555556666666777776666665542 1111 1345666777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCcC-HHhHHHHHH
Q 006010 446 GFFESGKGHKAVEIWKDMAKNNCVY-----NEVCYSVLIHGLCEDGKLREARMVWTQMLSR----GCKPD-VVAYSSMIH 515 (664)
Q Consensus 446 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~ 515 (664)
.|.. |++++|++.+++..+..... ...++..+...+...|++++|+..|++.+.. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 7777 88888888887766532111 1356778888899999999999999988753 11111 235667777
Q ss_pred HHHHcCCHHHHHHHHHHhhhcCCCCCCCH--hHHHHHHHHHHHcCChhHHHH
Q 006010 516 GLCNAGSVEEALKLFNEMLCLEPKSQPDV--FTYNILLNALCKQSNISHSID 565 (664)
Q Consensus 516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~ 565 (664)
++...|++++|...|++++ ..+...... .....++.++ ..|+.+.+..
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 8888899999999999996 555433222 1334445544 5677666655
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.87 E-value=4.1e-08 Score=103.14 Aligned_cols=156 Identities=8% Similarity=0.018 Sum_probs=105.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006010 380 EGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEI 459 (664)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 459 (664)
.|++++|+..+++..+... .+...+..+...+...|++++|.+.+++.++.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4677888888888776532 256777778888888888888888888888764 55677788888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc---CCHHHHHHHHHHhhhc
Q 006010 460 WKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA---GSVEEALKLFNEMLCL 536 (664)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 536 (664)
+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++... |++++|...+++++..
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88887765 4566777788888888888888888888887753 23456777788888888 8888888888888665
Q ss_pred CCC
Q 006010 537 EPK 539 (664)
Q Consensus 537 ~~~ 539 (664)
.+.
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 543
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.81 E-value=1.3e-07 Score=99.30 Aligned_cols=154 Identities=8% Similarity=-0.045 Sum_probs=116.4
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006010 345 LGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEI 424 (664)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 424 (664)
.|++++|.+.+++..+.... +...+..+...+.+.|++++|+..+++..+... .+...+..+...+...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47888999999988776443 677888899999999999999999999988643 3677888889999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC---CChHHHHHHHHHHHhC
Q 006010 425 LFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCED---GKLREARMVWTQMLSR 501 (664)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 501 (664)
++++++.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++.++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998874 5678888999999999999999999999988876 45677888888999998 9999999999999876
Q ss_pred C
Q 006010 502 G 502 (664)
Q Consensus 502 ~ 502 (664)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=3.6e-07 Score=82.08 Aligned_cols=145 Identities=9% Similarity=-0.054 Sum_probs=101.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHH
Q 006010 475 YSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNAL 554 (664)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 554 (664)
+..+...+...|++++|...|++.+ .|+...+..++..+...|++++|+..|++++...+. +...|..+..++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~lg~~~ 81 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH---LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chHHHHHHHHHH
Confidence 4456677788899999999888774 567788888999999999999999999998766544 667888888999
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhc-cCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCC
Q 006010 555 CKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKL-EAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSP 633 (664)
Q Consensus 555 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 633 (664)
...|++++|+..++++.+. .|+..... +...+ .........+..++.++.+.|++++|.+.++++.+. .|
T Consensus 82 ~~~~~~~~A~~~~~~al~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p 152 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQ--LRGNQLID-----YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KS 152 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHT--TTTCSEEE-----CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CC
T ss_pred HHcccHHHHHHHHHHHHHh--CCCccHHH-----HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cc
Confidence 9999999999999998873 33211000 00000 000000111223455599999999999999999974 44
Q ss_pred Ch
Q 006010 634 QT 635 (664)
Q Consensus 634 ~~ 635 (664)
+.
T Consensus 153 ~~ 154 (213)
T 1hh8_A 153 EP 154 (213)
T ss_dssp SG
T ss_pred cc
Confidence 43
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.74 E-value=8.4e-08 Score=80.02 Aligned_cols=104 Identities=9% Similarity=-0.016 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHH
Q 006010 471 NEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNIL 550 (664)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 550 (664)
+...+..+...+...|++++|...|++++... +.+...|..+..+|...|++++|+..|++++..+|+ +...|..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~---~~~~~~~l 110 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN---DYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS---CCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC---CcHHHHHH
Confidence 44567777788888899999999998888753 335678888888888999999999999988876665 56678888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006010 551 LNALCKQSNISHSIDLLNSMMDRGCDPDLV 580 (664)
Q Consensus 551 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 580 (664)
..+|.+.|++++|...|++.++ +.|+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 8888999999999999999887 456654
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.74 E-value=3e-07 Score=74.28 Aligned_cols=104 Identities=14% Similarity=0.111 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHH
Q 006010 473 VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLN 552 (664)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 552 (664)
..+......|.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..|+++++.++. +...|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK---FIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh---hhHHHHHHHH
Confidence 345566777777777777777777777653 334667777777777788888888888777665554 5667777777
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010 553 ALCKQSNISHSIDLLNSMMDRGCDPDLVTC 582 (664)
Q Consensus 553 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 582 (664)
++...|++++|++.|++.++ +.|+....
T Consensus 90 ~~~~~~~~~~A~~~~~~al~--l~P~~~~a 117 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQ--VDPSNEEA 117 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH--HCcCCHHH
Confidence 77778888888888887776 56665443
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.74 E-value=5.7e-06 Score=78.38 Aligned_cols=256 Identities=14% Similarity=0.038 Sum_probs=150.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-ChHH
Q 006010 379 KEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVG-KPDEAEEILFEMINNGCAANAFTYSSLMKGFFES-G-KGHK 455 (664)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~ 455 (664)
+.+..++|++++++++..+.. +..+|+.-...+...| .+++++..++.++... +.+..+|+.-...+... + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 344456677777777766433 4455666555566666 4777777777777664 55666666655555555 5 6777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChH--------HHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCC-----
Q 006010 456 AVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLR--------EARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGS----- 522 (664)
Q Consensus 456 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----- 522 (664)
++++++.+.+.. +.|..+|+.-...+...|.++ ++++.++++++.. .-|..+|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 777777777665 556666665555554444444 7888888888764 3366778877777777765
Q ss_pred --HHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhH--HHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCC--
Q 006010 523 --VEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISH--SIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAP-- 596 (664)
Q Consensus 523 --~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~-- 596 (664)
++++++.+++++..+++ |...|+.+-..+.+.|+... -..++= ..|... ......+...|.+..+..
T Consensus 222 ~~~~eELe~~~~aI~~~P~---n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPH---NVSAWNYLRGFLKHFSLPLVPILPAILP---YTASKL-NPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCSGGGHHHHGG---GTC---------------CCCCC-CCC
T ss_pred HHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCCcccccccccc---cccccc-cccchhHHHHHHHHHhcccc
Confidence 78899999988877766 78888877777776665411 000000 000000 000011111111111110
Q ss_pred ----CCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 006010 597 ----QDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQEL 645 (664)
Q Consensus 597 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 645 (664)
-.....++-|+.+|...|+.++|.++++.+.++--+.....|...+..+
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~~ 347 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRREC 347 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHhh
Confidence 1222334456666999999999999999997653233446666655443
No 120
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.74 E-value=6.5e-07 Score=81.88 Aligned_cols=192 Identities=9% Similarity=-0.040 Sum_probs=133.4
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCCHHHHHHH-------HHHHHHcCCHhHHHHHHHHHHhcccCCCCc--C---------
Q 006010 130 KAHLVEEAIRLFHTMVDEFHCKRTVKSFNSV-------LNVIIQEGLYHRALEFYNHIVNAKHMNILP--N--------- 191 (664)
Q Consensus 130 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~--------- 191 (664)
..++...|++.|.++... .+.....|+.+ ...+...++..++...+...++..+..+.. +
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 578899999999998775 45567788888 577777777777777777765521111000 0
Q ss_pred ------HHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HH
Q 006010 192 ------TLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPT--PV 263 (664)
Q Consensus 192 ------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~ 263 (664)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 1123445667788899999999998888764 433366666678888899999999888655431 111 23
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006010 264 TFNVLINGLCKNGELGRAAKLVDNMFLKGCLPN--EVTYNTLIHGLCLKGNLDKAVSLLDRMVAS 326 (664)
Q Consensus 264 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 326 (664)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 567777888888999999988888764322143 345566677778888888888888888876
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.73 E-value=3.5e-07 Score=87.43 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=28.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010 125 FKAYGKAHLVEEAIRLFHTMVDEFHCKRT----VKSFNSVLNVIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 182 (664)
+..|...|++++|++.|.+..+......+ ..+|+.++..|.+.|++++|+..|++.++
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 104 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASV 104 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 33455555666665555554332110011 23455555555555566666555555543
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.71 E-value=4e-06 Score=79.47 Aligned_cols=165 Identities=12% Similarity=0.018 Sum_probs=118.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 006010 408 LIDGLCRVGKPDEAEEILFEMINNGC-AANA----FTYSSLMKGFFESGKGHKAVEIWKDMAKNNCV-YN----EVCYSV 477 (664)
Q Consensus 408 li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 477 (664)
.+..+...|++++|..++++..+... .++. ..+..+...+...+++++|+..++.+...... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35567778888888888888776431 1221 12334666677778888888888888774322 22 236888
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhC-----CCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC--CCCCC-HhHHH
Q 006010 478 LIHGLCEDGKLREARMVWTQMLSR-----GCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEP--KSQPD-VFTYN 548 (664)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~-~~~~~ 548 (664)
+...|...|++++|...++++++. +..+. ..++..++..|.+.|++++|..++++++...+ +..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888899999999999999888731 12222 24788899999999999999999999865432 21222 56788
Q ss_pred HHHHHHHHcCC-hhHHHHHHHHHHH
Q 006010 549 ILLNALCKQSN-ISHSIDLLNSMMD 572 (664)
Q Consensus 549 ~l~~~~~~~g~-~~~A~~~~~~~~~ 572 (664)
.+..+|.+.|+ +++|.+.++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88999999995 6999999999874
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.71 E-value=4.4e-07 Score=73.26 Aligned_cols=109 Identities=13% Similarity=0.102 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHH
Q 006010 438 FTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGL 517 (664)
Q Consensus 438 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 517 (664)
..+......|.+.|++++|++.|++.++.. |.+...|..+..++...|++++|+..+++.++.. +.+...|..++.++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 445566777777788888888887777765 5567777777888888888888888888877753 33466777888888
Q ss_pred HHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHH
Q 006010 518 CNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILL 551 (664)
Q Consensus 518 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 551 (664)
...|++++|+..|+++++.+|+ +...+..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~---~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPS---NEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcC---CHHHHHHHH
Confidence 8888888888888888766554 444444443
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.67 E-value=1.3e-06 Score=78.30 Aligned_cols=127 Identities=9% Similarity=-0.083 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q 006010 121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIK 200 (664)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~ 200 (664)
+..++..+...|++++|++.|++.+ +++...|..++..+.+.|++++|...|+++.+.. +.+...+..+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~lg~ 79 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD----KHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccchHHHHHHHH
Confidence 3445555556666666666666552 3455566666666666666666666666665521 123445556666
Q ss_pred HHHhcCChhHHHHHHhhcccCC--------------CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006010 201 TVCRLGLVDNAIQLFREMPVRN--------------CEP-DIYTYCTLMDGLCKENRLDEAVLLLDEMQVD 256 (664)
Q Consensus 201 ~~~~~g~~~~A~~~~~~~~~~~--------------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 256 (664)
++...|++++|.+.|+...+.. ..| ....+..+..++.+.|++++|...|++....
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 6666666666666666655432 011 1256777777777788888888877777765
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.67 E-value=7.5e-08 Score=80.50 Aligned_cols=98 Identities=9% Similarity=-0.001 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHH
Q 006010 471 NEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNIL 550 (664)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 550 (664)
+...+..+...+...|++++|...|++++... +.+...|..+..+|...|++++|+..|++++...|. +...|..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l 95 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX---EPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CchHHHHH
Confidence 44556667777778888888888888877653 335667777888888888888888888888765554 55667777
Q ss_pred HHHHHHcCChhHHHHHHHHHHH
Q 006010 551 LNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 551 ~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
..+|...|++++|...|++.++
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7888888888888888888776
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.67 E-value=2e-05 Score=74.72 Aligned_cols=144 Identities=8% Similarity=0.009 Sum_probs=92.5
Q ss_pred HHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHc-C
Q 006010 91 QHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAH-LVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQE-G 168 (664)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 168 (664)
......+..++|..+++.++..++. ...+|+....++...| .++++++.++.++.. .+.+..+|+.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcC
Confidence 3344445556788888888887744 6677887777777777 488888888888765 556777888777777776 6
Q ss_pred -CHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChh--------HHHHHHhhcccCCCCCCHHHHHHHHHHHHh
Q 006010 169 -LYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVD--------NAIQLFREMPVRNCEPDIYTYCTLMDGLCK 239 (664)
Q Consensus 169 -~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (664)
++++++++++.+++.+ +.+..+|+--.-++.+.|.++ ++++.++++.+.+ +.|..+|+.....+.+
T Consensus 139 ~~~~~EL~~~~k~L~~d----pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPD----PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp SCCHHHHHHHHHHTSSC----TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 7778888888887622 224455555544444444444 5555555555544 3355555555555555
Q ss_pred cCC
Q 006010 240 ENR 242 (664)
Q Consensus 240 ~g~ 242 (664)
.++
T Consensus 214 l~~ 216 (349)
T 3q7a_A 214 RPG 216 (349)
T ss_dssp STT
T ss_pred ccc
Confidence 443
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.66 E-value=8.2e-07 Score=84.26 Aligned_cols=171 Identities=11% Similarity=0.033 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC--H
Q 006010 119 KSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT----VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN--T 192 (664)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~ 192 (664)
..+...+..+...|++++|++.+...++.....++ ...+..++..+...|++++|...++++.+.......+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555566666777777777777666543222111 12344455566666777777777777664221111122 3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhhcc---cCC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCC-C
Q 006010 193 LTFNLVIKTVCRLGLVDNAIQLFREMP---VRN-CEP--DIYTYCTLMDGLCKENRLDEAVLLLDEMQVDG----CFP-T 261 (664)
Q Consensus 193 ~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~ 261 (664)
.+++.+...|...|++++|...|++.. +.. ..+ ...++..+...|.+.|++++|+..+++..... ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 366777777777777777777777665 211 011 12466777777777777777777777655421 111 1
Q ss_pred HHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 006010 262 PVTFNVLINGLCKNGELGRA-AKLVDNMF 289 (664)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~a-~~~~~~~~ 289 (664)
..+|..+...|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45667777777777777777 66666654
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.65 E-value=1.1e-06 Score=74.99 Aligned_cols=130 Identities=14% Similarity=0.093 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHH
Q 006010 438 FTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGL 517 (664)
Q Consensus 438 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 517 (664)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++.+... +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345566667777788888888887777654 4466777777888888888888888888887753 33566778888888
Q ss_pred HHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHH--HHHHHHHcCChhHHHHHHHHHHH
Q 006010 518 CNAGSVEEALKLFNEMLCLEPKSQPDVFTYNI--LLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 518 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
...|++++|...|++++...+. +...+.. .+..+...|++++|+..+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH---DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888888765443 4444433 33346677888888888877653
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.64 E-value=4.8e-07 Score=82.73 Aligned_cols=191 Identities=9% Similarity=-0.115 Sum_probs=144.9
Q ss_pred hCCCcchHHHHHHHHHhCCCCcCHHHHHHH-------HHHHHhcCCHHHHHHHHHHhhhcC-----------CC------
Q 006010 95 NSGDFKSLEMVLYRMRREKRVVLEKSFIFI-------FKAYGKAHLVEEAIRLFHTMVDEF-----------HC------ 150 (664)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~-----------~~------ 150 (664)
..+++..|.+.|.++....+. ....|..+ ..++...++..+++..++..+... |.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 689999999999999998744 67788888 567777777777777766654410 00
Q ss_pred --CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCC--
Q 006010 151 --KRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPD-- 226 (664)
Q Consensus 151 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 226 (664)
......+......+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+...... .|.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 00134556678899999999999999999865 23544466666678899999999999999776542 121
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006010 227 IYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPT--PVTFNVLINGLCKNGELGRAAKLVDNMFLKG 292 (664)
Q Consensus 227 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 292 (664)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 24678889999999999999999999985433243 3466677788999999999999999998874
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.64 E-value=7.7e-07 Score=76.05 Aligned_cols=95 Identities=8% Similarity=0.045 Sum_probs=59.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHH
Q 006010 474 CYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNA 553 (664)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 553 (664)
.+..+...+...|++++|...+++.++.. +.+..++..++.++...|++++|...+++++...+. +...|..+..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHH
Confidence 45555666666677777777776666542 224556666666666667777777777666544332 45556666666
Q ss_pred HHHcCChhHHHHHHHHHHH
Q 006010 554 LCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 554 ~~~~g~~~~A~~~~~~~~~ 572 (664)
+...|++++|...++++.+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVK 109 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 6666677777776666665
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=2e-06 Score=81.60 Aligned_cols=172 Identities=8% Similarity=-0.025 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCC--cCHHHHHHHHHHHHhcCChhHHHHHHhhcccCC---CCCC--
Q 006010 154 VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNIL--PNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRN---CEPD-- 226 (664)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~-- 226 (664)
...+...+..+...|++++|.+.++...+..+.... .....+..+...+...|++++|...+++..... ..+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345556677778888888888888887763221100 011345556677778888888888888765431 1122
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCC-
Q 006010 227 IYTYCTLMDGLCKENRLDEAVLLLDEMQV---D-GCFP--TPVTFNVLINGLCKNGELGRAAKLVDNMFLKG----CLP- 295 (664)
Q Consensus 227 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~-~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g----~~p- 295 (664)
..+++.+...|...|++++|...+++..+ . +..+ ...++..+...|...|++++|+..+++..... ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45788888888888899888888888762 1 1111 12577888888888899998888888875431 111
Q ss_pred CHHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 006010 296 NEVTYNTLIHGLCLKGNLDKA-VSLLDRMVA 325 (664)
Q Consensus 296 ~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 325 (664)
-..+|..+...|...|++++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 146777888888888888888 777777654
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=2.5e-07 Score=86.96 Aligned_cols=98 Identities=13% Similarity=-0.035 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010 401 NTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIH 480 (664)
Q Consensus 401 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 480 (664)
+...+..+...+...|++++|...|+++++.. +.+...+..+...|.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455566666666777777777777666653 4456666666666666777777777766666654 345556666666
Q ss_pred HHHcCCChHHHHHHHHHHHh
Q 006010 481 GLCEDGKLREARMVWTQMLS 500 (664)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~ 500 (664)
++...|++++|...|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666777777666666655
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=7e-07 Score=84.74 Aligned_cols=169 Identities=11% Similarity=0.022 Sum_probs=105.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC--HHH
Q 006010 121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTV----KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN--TLT 194 (664)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~ 194 (664)
+...+..+...|++++|.+.++.........++. ..+..++..+...|++++|+..|+++++.......+. ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3344667788899999999998886643333332 1334566667777788888888888876211111110 235
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhccc----C-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HH
Q 006010 195 FNLVIKTVCRLGLVDNAIQLFREMPV----R-NCEPD-IYTYCTLMDGLCKENRLDEAVLLLDEMQVD----GCFPT-PV 263 (664)
Q Consensus 195 ~~~ll~~~~~~g~~~~A~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~ 263 (664)
++.+..+|...|++++|...|+++.+ . +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 77777788888888888888877763 1 11111 235667777777777777777777765432 11111 45
Q ss_pred HHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 006010 264 TFNVLINGLCKNGE-LGRAAKLVDNMF 289 (664)
Q Consensus 264 ~~~~li~~~~~~g~-~~~a~~~~~~~~ 289 (664)
+|..+..+|.+.|+ +++|.+.+++..
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66666666777773 467766666654
No 134
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.62 E-value=3.4e-07 Score=74.14 Aligned_cols=115 Identities=10% Similarity=0.146 Sum_probs=88.4
Q ss_pred HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHH
Q 006010 507 VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV-TCNIF 585 (664)
Q Consensus 507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l 585 (664)
..++..++..+.+.|++++|+..|++++..+|. +...|..+..+|.+.|++++|+..+++.++ +.|+.. .+..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~ 82 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHH
Confidence 346778899999999999999999999877665 678899999999999999999999999986 333221 12222
Q ss_pred HHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHH
Q 006010 586 LTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVV 642 (664)
Q Consensus 586 l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 642 (664)
..+ +..+|.++...|++++|++.|++.++ ..|++.....+-
T Consensus 83 a~~--------------~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l~ 123 (127)
T 4gcn_A 83 AKA--------------MSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKVK 123 (127)
T ss_dssp HHH--------------HHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHHH
T ss_pred HHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHHH
Confidence 222 23466669999999999999999987 467887665543
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.62 E-value=4e-07 Score=75.88 Aligned_cols=97 Identities=11% Similarity=0.008 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHH
Q 006010 119 KSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLV 198 (664)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 198 (664)
..+..+...+.+.|++++|+..|++.+.. .|.+...|..++.++...|++++|+..|+++.+..+ .+...|..+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P----~~~~~~~~l 110 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK----NDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS----SCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC----CCcHHHHHH
Confidence 34445555555555555555555555443 233444555555555555555555555555544211 123344455
Q ss_pred HHHHHhcCChhHHHHHHhhcccC
Q 006010 199 IKTVCRLGLVDNAIQLFREMPVR 221 (664)
Q Consensus 199 l~~~~~~g~~~~A~~~~~~~~~~ 221 (664)
..+|.+.|++++|++.|+...+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555555555444
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.61 E-value=3.2e-07 Score=79.62 Aligned_cols=119 Identities=14% Similarity=0.219 Sum_probs=67.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHH-HHHcCCH--HH
Q 006010 449 ESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHG-LCNAGSV--EE 525 (664)
Q Consensus 449 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 525 (664)
..|++++|...++...+.. +.+...+..+...+...|++++|...|++++... +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455556666666555544 3455556666666666666666666666665542 2234455555555 5566666 66
Q ss_pred HHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 526 ALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 526 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
|...+++++...+. +...+..+...+...|++++|...++++.+
T Consensus 100 A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSN---EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC---cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 66666666544333 445566666666666666666666666665
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.61 E-value=5e-07 Score=84.96 Aligned_cols=195 Identities=11% Similarity=0.016 Sum_probs=119.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006010 366 NEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMK 445 (664)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 445 (664)
+...+..+...+.+.|++++|+..|++..+.... +...+..+..++...|++++|...++++++.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4456666777777888888888888887776322 66777777888888888888888888887764 556777788888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHH
Q 006010 446 GFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEE 525 (664)
Q Consensus 446 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 525 (664)
+|...|++++|...++...+.. +.+...+...+....+ ..++.. +..........+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 8888888888888888776643 1111111111111111 111111 2222223333444443333332 2688899
Q ss_pred HHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc-CChhHHHHHHHHHHH
Q 006010 526 ALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ-SNISHSIDLLNSMMD 572 (664)
Q Consensus 526 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 572 (664)
|++.+++++..+++ +......+...+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGHED---DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTTSC---HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccccc---hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999888543322 333334444444444 668888888888775
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.57 E-value=1.8e-06 Score=70.44 Aligned_cols=118 Identities=13% Similarity=0.066 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHH
Q 006010 436 NAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIH 515 (664)
Q Consensus 436 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 515 (664)
+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++++.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34445555555555566666666665555543 3345555555556666666666666666655532 223455556666
Q ss_pred HHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcC
Q 006010 516 GLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQS 558 (664)
Q Consensus 516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 558 (664)
++...|++++|...|++++...+. +...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS---CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG---GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhc
Confidence 666666666666666666443322 2334444444444433
No 139
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.56 E-value=1.4e-06 Score=70.39 Aligned_cols=110 Identities=16% Similarity=0.122 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHH
Q 006010 473 VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLN 552 (664)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 552 (664)
..+..+...+...|++++|...|++.++.. +.+...|..+..++.+.|++++|+..+++++...+. +...|..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHH
Confidence 445666777778888888888888877653 335677788888888888888888888888766554 5667777888
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCC------CCHHHHHHHHHh
Q 006010 553 ALCKQSNISHSIDLLNSMMDRGCD------PDLVTCNIFLTA 588 (664)
Q Consensus 553 ~~~~~g~~~~A~~~~~~~~~~~~~------p~~~~~~~ll~~ 588 (664)
++...|++++|...+++..+ +. |+.......+..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART--KDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH--hCcccCCchhHHHHHHHHHH
Confidence 88888888888888888876 34 555544444443
No 140
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.56 E-value=5.5e-05 Score=71.34 Aligned_cols=231 Identities=9% Similarity=0.058 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C
Q 006010 385 DAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGK----------PDEAEEILFEMINNGCAANAFTYSSLMKGFFESG--K 452 (664)
Q Consensus 385 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 452 (664)
+|+..++.+...++. +..+|+.--..+...+. +++++.+++.++... +.+..+|+.-.-.+...+ .
T Consensus 48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCccc
Confidence 566666666655322 33334433333322222 467777777777654 556777766666666666 3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC-hHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc-----------
Q 006010 453 GHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGK-LREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA----------- 520 (664)
Q Consensus 453 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------- 520 (664)
+++++.+++.+.+.+ +.|..+|+.-...+...|. ++++++.++++++.. +-|..+|+.....+.+.
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccc
Confidence 678888888888766 5677777777767777777 578888888888764 33566777666665554
Q ss_pred ---CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc-----------CChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010 521 ---GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ-----------SNISHSIDLLNSMMDRGCDPDLVTCNIFL 586 (664)
Q Consensus 521 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 586 (664)
+.++++++.+.+++..+|+ |...|+.+-..+.+. +.++++++.++++.+ ..||. .|..+.
T Consensus 204 ~~~~~~~eEle~~~~ai~~~P~---d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~ 277 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTDPN---DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN-KWCLLT 277 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc-chHHHH
Confidence 4588999999999877776 788887665555544 457899999999998 67876 343222
Q ss_pred HhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCCh-HHHHHHHH
Q 006010 587 TALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQT-STWERVVQ 643 (664)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~ 643 (664)
.++ +.......|..++...++.++.+. .|-- .-|..+..
T Consensus 278 ~~~----------------~~~~~~~~~~~~~~~~~l~~l~~~--Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 278 IIL----------------LMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRS 317 (331)
T ss_dssp HHH----------------HHHHHCTTTTHHHHHHHHHHHHHH--CGGGHHHHHHHHH
T ss_pred HHH----------------HHHhhcccccHHHHHHHHHHHHHh--CcchhhHHHHHHH
Confidence 221 111123467778899999999873 5533 44444443
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.56 E-value=2.4e-06 Score=69.32 Aligned_cols=119 Identities=17% Similarity=0.073 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHH
Q 006010 437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHG 516 (664)
Q Consensus 437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 516 (664)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..... +.+...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445555566666666666666666665543 3455566666666666777777777776666542 2235566666667
Q ss_pred HHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCCh
Q 006010 517 LCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNI 560 (664)
Q Consensus 517 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 560 (664)
+...|++++|...|++++...+. +...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD---NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHhcC
Confidence 77777777777777776554333 455566666666665553
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=3.6e-06 Score=67.58 Aligned_cols=94 Identities=16% Similarity=0.301 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHH
Q 006010 439 TYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLC 518 (664)
Q Consensus 439 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 518 (664)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 33334444444444444444444444332 2233344444444444444444444444444331 123334444444444
Q ss_pred HcCCHHHHHHHHHHhh
Q 006010 519 NAGSVEEALKLFNEML 534 (664)
Q Consensus 519 ~~g~~~~A~~~~~~~~ 534 (664)
..|++++|...+++++
T Consensus 89 ~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 89 KQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHH
Confidence 4455555555554443
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=1.4e-06 Score=77.47 Aligned_cols=163 Identities=11% Similarity=-0.060 Sum_probs=96.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCc-CHHhHHHHHHHHHHcCCH
Q 006010 449 ESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSR----GCKP-DVVAYSSMIHGLCNAGSV 523 (664)
Q Consensus 449 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 523 (664)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++.+.. +..| ...++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664443332 11233456666667777777777777777766541 1122 235667777788888888
Q ss_pred HHHHHHHHHhhhcCCCCC--C--CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHhhhhhccCCCC
Q 006010 524 EEALKLFNEMLCLEPKSQ--P--DVFTYNILLNALCKQSNISHSIDLLNSMMDRGC-DPDLVTCNIFLTALKEKLEAPQD 598 (664)
Q Consensus 524 ~~A~~~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~~ 598 (664)
++|...+++++....... + ....+..+...+...|++++|...+++..+... ..+.......
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~------------- 149 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA------------- 149 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH-------------
Confidence 888888887754321111 1 133466777778888888888888888774210 1121111111
Q ss_pred chhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 599 GTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
+..++.++...|++++|.+.++++.+.
T Consensus 150 ----~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 150 ----FRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp ----HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 123455588888888888888887764
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=4e-07 Score=78.98 Aligned_cols=121 Identities=7% Similarity=0.115 Sum_probs=94.8
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHH-HHHcCCh
Q 006010 482 LCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNA-LCKQSNI 560 (664)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~ 560 (664)
+...|++++|...+++.+... +.+...|..++..|...|++++|...|++++...+. +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE---NAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhcCCc
Confidence 345788999999999988763 346788999999999999999999999999766554 67788888888 7899998
Q ss_pred --hHHHHHHHHHHHCCCCCCHHH-HHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 561 --SHSIDLLNSMMDRGCDPDLVT-CNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 561 --~~A~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
++|...++++.+ ..|+... +..+. .++...|++++|...++++.+.
T Consensus 96 ~~~~A~~~~~~al~--~~p~~~~~~~~la---------------------~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 96 MTAQTRAMIDKALA--LDSNEITALMLLA---------------------SDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CCHHHHHHHHHHHH--HCTTCHHHHHHHH---------------------HHHHHTTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHH--hCCCcHHHHHHHH---------------------HHHHHcccHHHHHHHHHHHHhh
Confidence 999999999998 4565433 33333 3399999999999999999985
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.53 E-value=1.2e-06 Score=77.88 Aligned_cols=157 Identities=10% Similarity=-0.020 Sum_probs=90.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHcCCChH
Q 006010 415 VGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKN----NC-VYNEVCYSVLIHGLCEDGKLR 489 (664)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~ 489 (664)
.|++++|.++++.+... .......+..+...+...|++++|...+++.... +. +....++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 45555555533333221 1123445555555566666666666665554441 11 112345666667777777777
Q ss_pred HHHHHHHHHHhC----CCCc--CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCC-CCC--HhHHHHHHHHHHHcCCh
Q 006010 490 EARMVWTQMLSR----GCKP--DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKS-QPD--VFTYNILLNALCKQSNI 560 (664)
Q Consensus 490 ~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~ 560 (664)
+|...+++.++. +-.| ....+..+...+...|++++|...+++++...... .+. ...+..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777766542 1111 13456777778888888888888888875332111 111 22356677778888888
Q ss_pred hHHHHHHHHHHH
Q 006010 561 SHSIDLLNSMMD 572 (664)
Q Consensus 561 ~~A~~~~~~~~~ 572 (664)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888774
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.53 E-value=1.3e-06 Score=70.67 Aligned_cols=107 Identities=10% Similarity=0.131 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCH----hHHH
Q 006010 473 VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDV----FTYN 548 (664)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~ 548 (664)
..+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++++...+...++. .+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345667777788888888888888877753 23456777788888888888888888888865544333322 2566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010 549 ILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTC 582 (664)
Q Consensus 549 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 582 (664)
.+..++...|++++|++.|++.++ ..||+...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHH
Confidence 677778888888888888888876 45665443
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.53 E-value=2.3e-06 Score=68.73 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006010 122 IFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHI 180 (664)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 180 (664)
..++..+...|++++|++.|.++... .+.+...+..++..+...|++++|...++++
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 69 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33333334444444444444433322 1222333333444444444444444444443
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.53 E-value=7.2e-07 Score=74.45 Aligned_cols=112 Identities=13% Similarity=-0.014 Sum_probs=80.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 006010 424 ILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGC 503 (664)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (664)
.+++++... +.+...+..+...+...|++++|...|+.+.... +.+...|..+..++...|++++|...|++++...
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 344444432 3345566667777888888888888888877765 5567777778888888888888888888887753
Q ss_pred CcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCC
Q 006010 504 KPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEP 538 (664)
Q Consensus 504 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (664)
+.+...+..+..+|...|++++|...|++++...+
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 23456777788888888888888888888865444
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=2.9e-06 Score=69.10 Aligned_cols=119 Identities=8% Similarity=-0.020 Sum_probs=95.2
Q ss_pred CCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHH
Q 006010 80 QLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNS 159 (664)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 159 (664)
+.++.++..+...+...|+++.|...|+.+....+ .+..++..++.++...|++++|++.|++.+.. .+.+...+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHH
Confidence 34567888899999999999999999999987764 36778889999999999999999999998765 4557788899
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcccCCCCc-CHHHHHHHHHHHHhcC
Q 006010 160 VLNVIIQEGLYHRALEFYNHIVNAKHMNILP-NTLTFNLVIKTVCRLG 206 (664)
Q Consensus 160 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g 206 (664)
++..+.+.|++++|...|++..+. .| +...+..+..++.+.|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDL-----DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHhc
Confidence 999999999999999999998772 23 3345556666665544
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.51 E-value=2.8e-05 Score=73.31 Aligned_cols=241 Identities=12% Similarity=0.046 Sum_probs=116.2
Q ss_pred HhcCChH-HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006010 308 CLKGNLD-KAVSLLDRMVASKCMPNEVTYGTIINGLVKLGR----------AVDGARVLMSMEERKFHVNEYIYSTLISG 376 (664)
Q Consensus 308 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (664)
.+.|.+. +|+++.+.++... +-+...|+.--..+...+. +++++.+++.+....++ +..+|+.-..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3455544 6777777777653 2233444443333332222 34555555555554433 44555544444
Q ss_pred HHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006010 377 LFKEGK--AEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGK-PDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKG 453 (664)
Q Consensus 377 ~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 453 (664)
+.+.++ +++++.+++++.+.... +..+|+.-...+...|. ++++++.+..+++.. +.|...|+.....+...+..
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 444442 45555555555554332 44455444444444454 355555555555543 33444444443333332100
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc-----------CC
Q 006010 454 HKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA-----------GS 522 (664)
Q Consensus 454 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~ 522 (664)
..+ ++ ..-...+.++++++.+...+... +-|...|+.+-..+.+. +.
T Consensus 196 ~~~-------------~~--------~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~ 253 (331)
T 3dss_A 196 PDS-------------GP--------QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTV 253 (331)
T ss_dssp C---------------------------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHH
T ss_pred ccc-------------cc--------ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHH
Confidence 000 00 00000023455566666555532 22344454443333333 45
Q ss_pred HHHHHHHHHHhhhcCCCCCCCHhHHHHHHHH-----HHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 006010 523 VEEALKLFNEMLCLEPKSQPDVFTYNILLNA-----LCKQSNISHSIDLLNSMMDRGCDPDLVT 581 (664)
Q Consensus 523 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 581 (664)
++++++.+++++...|. + .|..+..+ ....|..+++..++.++.+ +.|-...
T Consensus 254 l~~el~~~~elle~~pd---~--~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~ 310 (331)
T 3dss_A 254 LQSELESCKELQELEPE---N--KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA 310 (331)
T ss_dssp HHHHHHHHHHHHHHCTT---C--HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHH
T ss_pred HHHHHHHHHHHHhhCcc---c--chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhh
Confidence 78888888888765554 2 34322222 1235667788888888887 5665443
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=3.2e-06 Score=68.60 Aligned_cols=94 Identities=10% Similarity=-0.007 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 006010 85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVI 164 (664)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (664)
.+..+...+...|+++.|...++.+....+ .+...+..++.++...|++++|++.+...+.. .+.+...+..++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHH
Confidence 333334444444444444444444443321 12333334444444444444444444443332 122233334444444
Q ss_pred HHcCCHhHHHHHHHHHH
Q 006010 165 IQEGLYHRALEFYNHIV 181 (664)
Q Consensus 165 ~~~~~~~~A~~~~~~~~ 181 (664)
...|++++|...|+++.
T Consensus 91 ~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 44444444444444433
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.50 E-value=2.6e-06 Score=82.35 Aligned_cols=132 Identities=14% Similarity=0.009 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 006010 437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYN--------------EVCYSVLIHGLCEDGKLREARMVWTQMLSRG 502 (664)
Q Consensus 437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (664)
...+..+...|.+.|++++|+..|++......... ...|..+..++...|++++|+..++++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555566666666666666666666665441111 4678888889999999999999999988863
Q ss_pred CCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHH-HHHHHHHHH
Q 006010 503 CKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHS-IDLLNSMMD 572 (664)
Q Consensus 503 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 572 (664)
+.+...|..+..+|...|++++|+..|++++...+. +...+..+..++.+.|++++| ...+++|..
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN---NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335778888999999999999999999999876665 667888888889999998888 456777764
No 153
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.49 E-value=1.8e-06 Score=83.46 Aligned_cols=153 Identities=12% Similarity=0.076 Sum_probs=116.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC--------------HHhHHHHHHH
Q 006010 451 GKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD--------------VVAYSSMIHG 516 (664)
Q Consensus 451 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~ 516 (664)
+++++|.+.++...... +.+...+..+...+...|++++|...|++.+....... ..+|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34445555444433322 23456788889999999999999999999998632211 4789999999
Q ss_pred HHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCC
Q 006010 517 LCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAP 596 (664)
Q Consensus 517 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 596 (664)
|.+.|++++|+..+++++...+. +...|..+..+|...|++++|+..|+++++ +.|+.......+..
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~-------- 272 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAV-------- 272 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHH--------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH--------
Confidence 99999999999999999877665 778899999999999999999999999998 56765443333333
Q ss_pred CCchhhhHHHHHHhhhcCCcchH-HHHHHHHHHc
Q 006010 597 QDGTDFLNELAIRLFKRQRTSGG-FKIVEVMLQK 629 (664)
Q Consensus 597 ~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 629 (664)
++...|++++| .+++++|.++
T Consensus 273 ------------~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 273 ------------CQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 28888888888 5567776543
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.49 E-value=5.5e-07 Score=74.70 Aligned_cols=97 Identities=10% Similarity=-0.006 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHH
Q 006010 472 EVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILL 551 (664)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 551 (664)
...+..+...+...|++++|...|++++... +.+...|..+..++...|++++|+..|++++...|. +...|..+.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg 93 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN---EPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CcHHHHHHH
Confidence 3445556667777888888888888777653 235667777778888888888888888888765554 556677777
Q ss_pred HHHHHcCChhHHHHHHHHHHH
Q 006010 552 NALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 552 ~~~~~~g~~~~A~~~~~~~~~ 572 (664)
.+|...|++++|...|++.++
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 788888888888888888776
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.44 E-value=4.6e-06 Score=67.33 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q 006010 83 DSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLN 162 (664)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (664)
...+......+.+.|++++|...|+.+.+..+ .+..++..++.++...|++++|+..|++.++. .+.+...|..++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 34566666777777777777777777776553 35566777777777777777777777776654 3445666777777
Q ss_pred HHHHcCCHhHHHHHHHHHHh
Q 006010 163 VIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 163 ~~~~~~~~~~A~~~~~~~~~ 182 (664)
++...|++++|...|+++.+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 77777777777777777665
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=2.3e-06 Score=70.89 Aligned_cols=101 Identities=11% Similarity=-0.012 Sum_probs=82.2
Q ss_pred CcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010 504 KPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTC 582 (664)
Q Consensus 504 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 582 (664)
.|+ ...+..+...+.+.|++++|...|++++...|. +...|..+..++...|++++|+..++++++ +.|+....
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 88 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY---DARYFLGLGACRQSLGLYEQALQSYSYGAL--MDINEPRF 88 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHH
Confidence 343 456777888899999999999999999876655 778899999999999999999999999998 45654433
Q ss_pred HHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 583 NIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 583 ~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
...+.. ++...|++++|.+.++++.+.
T Consensus 89 ~~~lg~--------------------~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 89 PFHAAE--------------------CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHH--------------------HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHH--------------------HHHHcCCHHHHHHHHHHHHHh
Confidence 332322 399999999999999999875
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.41 E-value=3.8e-07 Score=80.78 Aligned_cols=123 Identities=10% Similarity=-0.008 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCC--CC-----------HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 006010 509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQ--PD-----------VFTYNILLNALCKQSNISHSIDLLNSMMDRGC 575 (664)
Q Consensus 509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 575 (664)
.+..+...+...|++++|+..|++++...+... .. ...|..+..+|...|++++|+..++++++ .
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~ 117 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK--I 117 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--h
Confidence 444555555555666666666665543322210 00 14455555566666666666666666665 2
Q ss_pred CCCHH-HHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHH
Q 006010 576 DPDLV-TCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAA 654 (664)
Q Consensus 576 ~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 654 (664)
.|+.. .+..+. .++...|++++|.+.++++.+. .+.++..+..+..++...|+.+++
T Consensus 118 ~p~~~~~~~~lg---------------------~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 118 DKNNVKALYKLG---------------------VANMYFGFLEEAKENLYKAASL-NPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp STTCHHHHHHHH---------------------HHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHC-
T ss_pred CcccHHHHHHHH---------------------HHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 33322 222222 2256666666666666666553 223445556666666665655555
Q ss_pred H
Q 006010 655 I 655 (664)
Q Consensus 655 ~ 655 (664)
.
T Consensus 176 ~ 176 (198)
T 2fbn_A 176 D 176 (198)
T ss_dssp -
T ss_pred H
Confidence 4
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.41 E-value=4.7e-06 Score=70.99 Aligned_cols=103 Identities=13% Similarity=0.048 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHH
Q 006010 471 NEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNIL 550 (664)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 550 (664)
+...+..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|++++...+. +...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK---YSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHH
Confidence 44567777778888888888888888887753 235677778888888888888888888888766554 56777788
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006010 551 LNALCKQSNISHSIDLLNSMMDRGCDPDL 579 (664)
Q Consensus 551 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 579 (664)
..+|...|++++|...|++.++ +.|+.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~--~~p~~ 112 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIE--AEGNG 112 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HHSSS
T ss_pred HHHHHHccCHHHHHHHHHHHHH--hCCCc
Confidence 8888888888888888888876 34443
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.39 E-value=7.1e-06 Score=67.29 Aligned_cols=96 Identities=17% Similarity=0.069 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHH
Q 006010 472 EVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILL 551 (664)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 551 (664)
...+..+...+...|++++|...|++.+... +.+...|..+..++...|++++|...+++++...+. +...|..+.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~ 84 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAHFFLG 84 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch---hHHHHHHHH
Confidence 3344444444444444444444444444331 112334444444444444444444444444333222 333444444
Q ss_pred HHHHHcCChhHHHHHHHHHH
Q 006010 552 NALCKQSNISHSIDLLNSMM 571 (664)
Q Consensus 552 ~~~~~~g~~~~A~~~~~~~~ 571 (664)
.++...|++++|...++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 44444444444444444444
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=1.4e-05 Score=63.27 Aligned_cols=101 Identities=12% Similarity=0.046 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHH
Q 006010 473 VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLN 552 (664)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 552 (664)
..+..+...+...|++++|...+++..... +.+...+..++..+...|++++|...+++++...+. +...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc---cHHHHHHHHH
Confidence 345556666667777777777777766542 234566666777777777777777777777654333 4556666777
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006010 553 ALCKQSNISHSIDLLNSMMDRGCDPDL 579 (664)
Q Consensus 553 ~~~~~g~~~~A~~~~~~~~~~~~~p~~ 579 (664)
++...|++++|...+++..+ ..|+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~--~~~~~ 105 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK--HEANN 105 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT--TCTTC
T ss_pred HHHHHhhHHHHHHHHHHHHH--cCCCC
Confidence 77777777777777777765 34443
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=7.7e-06 Score=72.22 Aligned_cols=96 Identities=18% Similarity=0.092 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHH
Q 006010 473 VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLN 552 (664)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 552 (664)
..+..+..++...|++++|+..+++.+... +.+...+..+..+|...|++++|...|++++...+. +...+..+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN---NLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHHH
Confidence 566677777888888888888888887753 335677788888888888888888888888765554 5667777777
Q ss_pred HHHHcCChhHHH-HHHHHHHH
Q 006010 553 ALCKQSNISHSI-DLLNSMMD 572 (664)
Q Consensus 553 ~~~~~g~~~~A~-~~~~~~~~ 572 (664)
++...++.+++. ..+..|..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 165 CVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 777777666666 45555554
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.35 E-value=4.1e-06 Score=66.94 Aligned_cols=98 Identities=15% Similarity=0.123 Sum_probs=70.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHH
Q 006010 475 YSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNAL 554 (664)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 554 (664)
+..+...+...|++++|...++++++.. +.+...|..+..++...|++++|+..|++++..+|. +...+..+..++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHH
Confidence 4445666777888888888888877752 235667777788888888888888888888766555 566777777888
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCC
Q 006010 555 CKQSNISHSIDLLNSMMDRGCDPD 578 (664)
Q Consensus 555 ~~~g~~~~A~~~~~~~~~~~~~p~ 578 (664)
...|++++|+..++++++ ..|+
T Consensus 96 ~~~g~~~~A~~~~~~al~--~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLL--SQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC------
T ss_pred HHcCCHHHHHHHHHHHHH--hCcC
Confidence 888888888888888775 4444
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.35 E-value=7.9e-06 Score=66.99 Aligned_cols=103 Identities=15% Similarity=0.030 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHH
Q 006010 434 AANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSM 513 (664)
Q Consensus 434 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 513 (664)
+.+...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++.+... +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 4578889999999999999999999999998876 5678889999999999999999999999999864 3357789999
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhcCC
Q 006010 514 IHGLCNAGSVEEALKLFNEMLCLEP 538 (664)
Q Consensus 514 ~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (664)
..++...|++++|...|++++...+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 9999999999999999999976544
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.34 E-value=3.9e-06 Score=68.08 Aligned_cols=117 Identities=11% Similarity=0.146 Sum_probs=87.6
Q ss_pred HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HH
Q 006010 507 VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGC--DPD----LV 580 (664)
Q Consensus 507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~ 580 (664)
...+..++..+...|++++|...|++++...+. +...+..+...+...|++++|...++++.+... .++ ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 356777888888999999999999998765443 667788888899999999999999999886311 111 12
Q ss_pred HHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccc
Q 006010 581 TCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPK 649 (664)
Q Consensus 581 ~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 649 (664)
.+. .++.++...|++++|.+.++++.+. .|++..+..+.......+
T Consensus 81 ~~~---------------------~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 81 AYA---------------------RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHH---------------------HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHH
T ss_pred HHH---------------------HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHH
Confidence 222 3445599999999999999999984 567877777766654433
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=2.2e-05 Score=62.06 Aligned_cols=94 Identities=11% Similarity=0.017 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Q 006010 121 FIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIK 200 (664)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~ 200 (664)
+..++..+...|++++|++.|+..... .+.+...+..++..+...|++++|...++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~ 80 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK----PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC----cccHHHHHHHHH
Confidence 334444444444444444444444332 22234444444444444444444444444444311 012333344444
Q ss_pred HHHhcCChhHHHHHHhhccc
Q 006010 201 TVCRLGLVDNAIQLFREMPV 220 (664)
Q Consensus 201 ~~~~~g~~~~A~~~~~~~~~ 220 (664)
++...|++++|.+.++...+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 44444444444444444433
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.33 E-value=1.2e-05 Score=68.54 Aligned_cols=99 Identities=11% Similarity=-0.051 Sum_probs=84.9
Q ss_pred ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 006010 82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVL 161 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 161 (664)
+...+..+...+...|+++.|...|++++...+. +..++..+..+|...|++++|+..|++.+.. .+.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 4567888888999999999999999999887643 6778889999999999999999999998775 455688899999
Q ss_pred HHHHHcCCHhHHHHHHHHHHhc
Q 006010 162 NVIIQEGLYHRALEFYNHIVNA 183 (664)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~ 183 (664)
.++...|++++|...|+++++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999998873
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=2.4e-05 Score=65.02 Aligned_cols=106 Identities=14% Similarity=0.013 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC----HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHh
Q 006010 470 YNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD----VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVF 545 (664)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 545 (664)
.+...+..+...+...|++++|...|++.++. .|+ ...+..+..++...|++++|+..+++++...+. +..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~ 100 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG---DVK 100 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC---CHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc---CHH
Confidence 34556777777778888888888888887764 444 566777778888888888888888888655443 566
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006010 546 TYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTC 582 (664)
Q Consensus 546 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 582 (664)
.|..+..++...|++++|...+++..+ ..|+....
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~ 135 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNKVF 135 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHH
Confidence 777777888888888888888888877 45554433
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.28 E-value=6.2e-06 Score=65.89 Aligned_cols=95 Identities=6% Similarity=-0.097 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 006010 85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVI 164 (664)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (664)
.+..+...+.+.|++++|...|+++++..+ .+..++..+..++...|++++|+..|++.++. .+.+...+..++.++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 456667778888888888888888887764 36778888888888888888888888888765 345677888888888
Q ss_pred HHcCCHhHHHHHHHHHHh
Q 006010 165 IQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 165 ~~~~~~~~A~~~~~~~~~ 182 (664)
...|++++|+..|+++++
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888888876
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.28 E-value=7.8e-06 Score=66.23 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CCC----HHHHH
Q 006010 84 STFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHC-KRT----VKSFN 158 (664)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~ 158 (664)
..+..+...+...|+++.|...|+.+....+ .+...+..++..+...|++++|+..|...+...+. .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3445555555555555555555555555432 23445555555555555555555555555442110 111 44455
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHh
Q 006010 159 SVLNVIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 159 ~l~~~~~~~~~~~~A~~~~~~~~~ 182 (664)
.++..+...|++++|...|+.+.+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555555555555555555544
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=2.8e-05 Score=78.42 Aligned_cols=98 Identities=6% Similarity=-0.058 Sum_probs=46.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhC--C--CCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCC----H
Q 006010 474 CYSVLIHGLCEDGKLREARMVWTQMLSR--G--CKPD-VVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPD----V 544 (664)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~ 544 (664)
++..+...+...|++++|..+++++... + -.+. ..++..++..|...|++++|..++++++...+....+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 4444555555555555555555554321 0 0111 2345555555666666666666665554322211111 1
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006010 545 FTYNILLNALCKQSNISHSIDLLNSMM 571 (664)
Q Consensus 545 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 571 (664)
..+..++..+...|++++|...+.+..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 233344444455556666655555544
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.26 E-value=9.1e-06 Score=63.67 Aligned_cols=98 Identities=11% Similarity=-0.010 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHH
Q 006010 473 VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLN 552 (664)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 552 (664)
..+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|...+++++...+. ..+...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHHHHHH
Confidence 344445555555566666666665555432 223445555555666666666666666665433222 113445555555
Q ss_pred HHHHc-CChhHHHHHHHHHHH
Q 006010 553 ALCKQ-SNISHSIDLLNSMMD 572 (664)
Q Consensus 553 ~~~~~-g~~~~A~~~~~~~~~ 572 (664)
++... |++++|.+.+++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 66666 666666666666654
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.24 E-value=1.2e-05 Score=62.99 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=63.1
Q ss_pred ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC--CHHHHHH
Q 006010 82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKR--TVKSFNS 159 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~ 159 (664)
+...+..+...+...|++++|...++++.+..+ .+...+..++.++...|++++|++.|++.++. .+. +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHH
Confidence 344556666666777777777777777666543 24556666666677777777777777766554 223 4666666
Q ss_pred HHHHHHHc-CCHhHHHHHHHHHHh
Q 006010 160 VLNVIIQE-GLYHRALEFYNHIVN 182 (664)
Q Consensus 160 l~~~~~~~-~~~~~A~~~~~~~~~ 182 (664)
+...+.+. |++++|.+.++.+..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhh
Confidence 66667777 777777777766655
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=4.5e-05 Score=76.89 Aligned_cols=167 Identities=7% Similarity=-0.057 Sum_probs=81.5
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhCCCCcC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 006010 87 YSLIQHYANSGDFKSLEMVLYRMRREKRVVL----------------EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHC 150 (664)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 150 (664)
..-.+.+.+.|++++|.+.|..+.+...... ..++..++..|...|++++|.+.+..+.+..+.
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3345666777888888888877776533211 124566777777777777777777766543222
Q ss_pred CCCHH----HHHHHHHHHHHcCCHhHHHHHHHHHHhccc-CCCCcC-HHHHHHHHHHHHhcCChhHHHHHHhhcccC--C
Q 006010 151 KRTVK----SFNSVLNVIIQEGLYHRALEFYNHIVNAKH-MNILPN-TLTFNLVIKTVCRLGLVDNAIQLFREMPVR--N 222 (664)
Q Consensus 151 ~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~ 222 (664)
.++.. ..+.+...+...|++++|..+++....... .+..+. ..++..+...+...|++++|..+++++... +
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 88 FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 22211 222233333344566666666655543100 011111 223444555555555555555555443221 0
Q ss_pred C---CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010 223 C---EPDIYTYCTLMDGLCKENRLDEAVLLLDEM 253 (664)
Q Consensus 223 ~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 253 (664)
. +....++..++..|...|++++|..++++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 0 001233444444444455555544444443
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.23 E-value=2.3e-05 Score=63.37 Aligned_cols=98 Identities=10% Similarity=0.121 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHH
Q 006010 85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRVVL--EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT-VKSFNSVL 161 (664)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~ 161 (664)
++..+...+...|+++.|...|+.+.+..+... ..++..++.++...|++++|+..|+.++...+..+. ..++..++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 345566667777777777777777776543322 146666777777777777777777776654221111 45666677
Q ss_pred HHHHHcCCHhHHHHHHHHHHh
Q 006010 162 NVIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~ 182 (664)
.++.+.|++++|...|+.+.+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777765
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=4e-05 Score=63.62 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhH
Q 006010 435 ANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYN----EVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAY 510 (664)
Q Consensus 435 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 510 (664)
.+...+..+...+...|++++|.+.|++..+.. |+ ...+..+...+...|++++|...+++.+... +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 345566666667777777777777777776654 33 4566667777777788888888887777642 2345667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhcCC
Q 006010 511 SSMIHGLCNAGSVEEALKLFNEMLCLEP 538 (664)
Q Consensus 511 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (664)
..+..++...|++++|...|++++...+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 7777778888888888888888765443
No 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.21 E-value=1.8e-05 Score=67.07 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhC--------C--------CCc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcC
Q 006010 475 YSVLIHGLCEDGKLREARMVWTQMLSR--------G--------CKP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLE 537 (664)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~--------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 537 (664)
+......+.+.|++++|+..|.+.+.. . ..| +...|..+..+|.+.|++++|+..+++++..+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 334444555555555555555554442 0 012 24578888899999999999999999998766
Q ss_pred CCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHhh
Q 006010 538 PKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV-TCNIFLTAL 589 (664)
Q Consensus 538 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~ 589 (664)
+. +...|..+..+|...|++++|...|++.++ +.|+.. .....+..+
T Consensus 94 p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 94 ET---NEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREMKIV 141 (162)
T ss_dssp TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHH
T ss_pred Cc---chHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHHHHH
Confidence 55 677888899999999999999999999998 577765 555555443
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.20 E-value=3.8e-06 Score=66.76 Aligned_cols=85 Identities=12% Similarity=0.092 Sum_probs=60.6
Q ss_pred CCChHHHHHHHHHHHhCCC-Cc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhH
Q 006010 485 DGKLREARMVWTQMLSRGC-KP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISH 562 (664)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 562 (664)
.|++++|+..|++.++.+. .| +...+..+..+|...|++++|+..|++++...|. +...+..+..++...|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN---HQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHcCCHHH
Confidence 5677778888888776431 13 3456777888888888888888888888766555 56677778888888888888
Q ss_pred HHHHHHHHHH
Q 006010 563 SIDLLNSMMD 572 (664)
Q Consensus 563 A~~~~~~~~~ 572 (664)
|+..+++.++
T Consensus 80 A~~~~~~al~ 89 (117)
T 3k9i_A 80 GVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888876
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.20 E-value=2.6e-05 Score=63.00 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=39.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCcC-H---HhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHH
Q 006010 479 IHGLCEDGKLREARMVWTQMLSRGCKPD-V---VAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNAL 554 (664)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 554 (664)
...+...|++++|...|+++++.. |+ . ..+..++.++...|++++|...|++++...+........+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 334444455555555555444421 11 1 23444444444455555555555444433222111123344444444
Q ss_pred HHcCChhHHHHHHHHHHH
Q 006010 555 CKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 555 ~~~g~~~~A~~~~~~~~~ 572 (664)
...|++++|...++++.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444455444444444
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.20 E-value=8.6e-06 Score=79.60 Aligned_cols=96 Identities=6% Similarity=-0.038 Sum_probs=66.4
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHH
Q 006010 543 DVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVT-CNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFK 621 (664)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 621 (664)
+...|..+..+|.+.|++++|+..++++++ +.|+... +..+. .+|...|++++|.+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg---------------------~~~~~~g~~~eA~~ 328 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRA---------------------QGWQGLKEYDQALA 328 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHH---------------------HHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hCchhHHHHHHHH---------------------HHHHHccCHHHHHH
Confidence 345677777888888888888888888886 4555332 22222 23888888888888
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHHHHhhh
Q 006010 622 IVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINKCWSNL 662 (664)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 662 (664)
.++++.+. .+.+...+..+..++...|+.++|.+...+.+
T Consensus 329 ~l~~Al~l-~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~km 368 (370)
T 1ihg_A 329 DLKKAQEI-APEDKAIQAELLKVKQKIKAQKDKEKAAYAKM 368 (370)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888875 23366778888888888888888876654433
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.19 E-value=4.6e-06 Score=70.71 Aligned_cols=137 Identities=10% Similarity=-0.041 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCC---CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHH
Q 006010 509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQP---DVFTYNILLNALCKQSNISHSIDLLNSMMDRGC-DPDLVTCNI 584 (664)
Q Consensus 509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~ 584 (664)
++..+...+...|++++|...+++++...+.... ....+..+...+...|++++|...+++..+... .++......
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555555555555555555555432111000 012445555556666666666666666553100 011111000
Q ss_pred HHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc----CCCC-ChHHHHHHHHHhcccchHHHHHHHHH
Q 006010 585 FLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK----FLSP-QTSTWERVVQELCRPKRIQAAINKCW 659 (664)
Q Consensus 585 ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 659 (664)
.+..++.++...|++++|.+.+++..+. +..+ ....+..++..+...|++++|++.+.
T Consensus 91 -----------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 91 -----------------SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp -----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 0112344466666666666666666543 1010 12445566666777777777777666
Q ss_pred hhh
Q 006010 660 SNL 662 (664)
Q Consensus 660 ~~l 662 (664)
+.+
T Consensus 154 ~a~ 156 (164)
T 3ro3_A 154 KHL 156 (164)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.16 E-value=1.7e-05 Score=80.31 Aligned_cols=150 Identities=13% Similarity=0.099 Sum_probs=96.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC----------------HHhHHHHHH
Q 006010 452 KGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD----------------VVAYSSMIH 515 (664)
Q Consensus 452 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~ 515 (664)
++++|.+.|+...... +.....+..+...+.+.|++++|...|+++++. .|+ ...|..+..
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 4444544443332221 223456777788888888888888888888774 233 467778888
Q ss_pred HHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccC
Q 006010 516 GLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEA 595 (664)
Q Consensus 516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 595 (664)
+|.+.|++++|+..+++++..++. +...|..+..+|...|++++|+..|+++++ +.|+.......+..
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~------- 393 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISM------- 393 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHH-------
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH-------
Confidence 888888888888888888766554 667777888888888888888888888886 56655433333333
Q ss_pred CCCchhhhHHHHHHhhhcCCcchHH-HHHHHHHHc
Q 006010 596 PQDGTDFLNELAIRLFKRQRTSGGF-KIVEVMLQK 629 (664)
Q Consensus 596 ~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 629 (664)
++.+.|+++++. ..+++|..+
T Consensus 394 -------------~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 394 -------------CQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHC---
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhh
Confidence 266677776655 345555544
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=2.1e-05 Score=66.42 Aligned_cols=134 Identities=13% Similarity=0.082 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCc-CHH
Q 006010 439 TYSSLMKGFFESGKGHKAVEIWKDMAKNNCV-YN----EVCYSVLIHGLCEDGKLREARMVWTQMLSR----GCKP-DVV 508 (664)
Q Consensus 439 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~ 508 (664)
++..+...+...|++++|.+.+++..+.... .+ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555554432100 11 135556666777777777777777766542 1111 134
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQ---PDVFTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
++..+...+...|++++|...+++++....... .....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567777788888888888888888754321111 1133566777788888999999888888775
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=6.2e-06 Score=83.77 Aligned_cols=89 Identities=9% Similarity=0.068 Sum_probs=55.6
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC
Q 006010 480 HGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN 559 (664)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 559 (664)
..+...|++++|.+.+++.++.. +.+..+|..+..+|.+.|++++|+..++++++..+. +...|..+..+|...|+
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCC
Confidence 34556666777777776666542 223556666666666667777777776666554433 45566666666666666
Q ss_pred hhHHHHHHHHHHH
Q 006010 560 ISHSIDLLNSMMD 572 (664)
Q Consensus 560 ~~~A~~~~~~~~~ 572 (664)
+++|.+.++++.+
T Consensus 90 ~~eA~~~~~~al~ 102 (477)
T 1wao_1 90 FRAALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666665
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.11 E-value=7.9e-06 Score=83.02 Aligned_cols=120 Identities=13% Similarity=0.018 Sum_probs=68.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChH
Q 006010 410 DGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLR 489 (664)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 489 (664)
..+.+.|++++|.+.++++++.. +.+...+..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34555666777777777666653 4456666666666666666666666666666654 345556666666666666666
Q ss_pred HHHHHHHHHHhCCCCcCHHhHHHHHHH--HHHcCCHHHHHHHHHH
Q 006010 490 EARMVWTQMLSRGCKPDVVAYSSMIHG--LCNAGSVEEALKLFNE 532 (664)
Q Consensus 490 ~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 532 (664)
+|.+.++++++.. +.+...+..+..+ +.+.|++++|++.+++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6666666666542 1122334444333 5556666666666653
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.11 E-value=1e-05 Score=64.20 Aligned_cols=86 Identities=10% Similarity=0.000 Sum_probs=67.6
Q ss_pred hCCCcchHHHHHHHHHhCC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhH
Q 006010 95 NSGDFKSLEMVLYRMRREK--RVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHR 172 (664)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 172 (664)
..|++++|...|+++++.+ .+.+..++..++.+|...|++++|++.|++.++. .+.+...+..++.++.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 3578889999999988764 2445667888889999999999999999998776 45567888888999999999999
Q ss_pred HHHHHHHHHh
Q 006010 173 ALEFYNHIVN 182 (664)
Q Consensus 173 A~~~~~~~~~ 182 (664)
|...+++.+.
T Consensus 80 A~~~~~~al~ 89 (117)
T 3k9i_A 80 GVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998877
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.09 E-value=1.8e-05 Score=65.03 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=65.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCcC-------------HHhHHHHHHHHHHcCCHHHHHHHHHHhhhc-------
Q 006010 477 VLIHGLCEDGKLREARMVWTQMLSRGCKPD-------------VVAYSSMIHGLCNAGSVEEALKLFNEMLCL------- 536 (664)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 536 (664)
.....+...|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..+++++..
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444455556666666666655543 222 237888888888888888888888888765
Q ss_pred CCCCCCCHhHH----HHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 537 EPKSQPDVFTY----NILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 537 ~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
+|+ +...| .....++...|++++|+..|++.++
T Consensus 94 ~pd---~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQD---EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TST---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCc---hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 443 55577 8888889999999999999999886
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.09 E-value=4.1e-05 Score=77.42 Aligned_cols=125 Identities=11% Similarity=0.008 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-------------HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcc
Q 006010 118 EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT-------------VKSFNSVLNVIIQEGLYHRALEFYNHIVNAK 184 (664)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 184 (664)
...+..+...+.+.|++++|+..|.+.+...+..+. ...|..+..++.+.|++++|+..|+++++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 334555555555555555555555555443111110 3555556666666666666666666665521
Q ss_pred cCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006010 185 HMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAV 247 (664)
Q Consensus 185 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 247 (664)
+.+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++.+.++.+++.
T Consensus 348 ----p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 ----SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred ----CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1134455555556666666666666666655543 333445555555555555555444
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.09 E-value=4.5e-05 Score=64.64 Aligned_cols=98 Identities=10% Similarity=-0.057 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHhC--------C---------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006010 83 DSTFYSLIQHYANSGDFKSLEMVLYRMRRE--------K---------RVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMV 145 (664)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (664)
...+......+.+.|+++.|...|..++.. . .+....++..++.+|.+.|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777888999999999999999988865 1 12233567788888888888888888888877
Q ss_pred hcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010 146 DEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 182 (664)
.. .+.++.+|..++.++...|++++|...|++.++
T Consensus 91 ~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 91 KR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 65 455677888888888888888888888888877
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.04 E-value=0.00032 Score=72.56 Aligned_cols=163 Identities=7% Similarity=0.028 Sum_probs=122.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-
Q 006010 418 PDEAEEILFEMINNGCAANAFTYSSLMKGFFESGK----------GHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDG- 486 (664)
Q Consensus 418 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 486 (664)
.++|.+.+++++..+ +.+..+|+.--..+...|+ ++++++.++.+.+.. +.+..+|+.-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 356677777777764 4456666665555555555 788899999988876 677888888888888888
Q ss_pred -ChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcC-CHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHc-------
Q 006010 487 -KLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAG-SVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQ------- 557 (664)
Q Consensus 487 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 557 (664)
+++++++.++++++.. +-+..+|+.-..++.+.| .++++++.+++++..++. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~---n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS---NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC---CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC---CccHHHHHHHHHHhhccccccc
Confidence 6799999999999864 346788888888888888 899999999999765554 778888887777663
Q ss_pred -------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010 558 -------SNISHSIDLLNSMMDRGCDPDLVTCNIFLTA 588 (664)
Q Consensus 558 -------g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 588 (664)
+.++++++.+++++. +.|+....-...+.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ 234 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRW 234 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHH
Confidence 557899999999987 56765543333444
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.03 E-value=5.7e-05 Score=73.74 Aligned_cols=140 Identities=11% Similarity=-0.001 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006010 402 TVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHG 481 (664)
Q Consensus 402 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (664)
...+..+...+.+.|++++|...|+++++.- +.. ...... +...... +.+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~-------~~~~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAED-------ADGAKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCH-------HHHGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccCh-------HHHHHHH-HHHHHHHHHHHHH
Confidence 3445556666666777777777766665420 000 000000 0011111 2345567777888
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChh
Q 006010 482 LCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNIS 561 (664)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 561 (664)
|.+.|++++|+..++++++.. +.+...+..+..+|...|++++|+..|+++++..+. +...+..+..++...++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~---~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE---DKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888753 234677888888888888888888888888766554 5666777777777766666
Q ss_pred HHHH
Q 006010 562 HSID 565 (664)
Q Consensus 562 ~A~~ 565 (664)
++.+
T Consensus 359 ~a~k 362 (370)
T 1ihg_A 359 DKEK 362 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.01 E-value=2.2e-05 Score=75.82 Aligned_cols=148 Identities=15% Similarity=0.052 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006010 402 TVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHG 481 (664)
Q Consensus 402 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (664)
...+..+...+.+.|++++|...|++++... |+... +...++.+++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4455566666677777777777777776542 22221 122223333322211 1367778889
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHH-HHHcCCh
Q 006010 482 LCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNA-LCKQSNI 560 (664)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~ 560 (664)
+.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++++...+. +...+..+... ....+..
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~---~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD---DKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998753 335778899999999999999999999999654443 44455555554 3345677
Q ss_pred hHHHHHHHHHHH
Q 006010 561 SHSIDLLNSMMD 572 (664)
Q Consensus 561 ~~A~~~~~~~~~ 572 (664)
+++...|++|..
T Consensus 316 ~~a~~~~~~~l~ 327 (338)
T 2if4_A 316 QKQKEMYKGIFK 327 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHHhhC
Confidence 788888988886
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.01 E-value=1.5e-05 Score=76.96 Aligned_cols=150 Identities=13% Similarity=0.026 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHH
Q 006010 437 AFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHG 516 (664)
Q Consensus 437 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 516 (664)
...+..+...+.+.|++++|...|++..... |+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4455666666777777777777777766543 32221 223333333332221 1378889999
Q ss_pred HHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCC
Q 006010 517 LCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAP 596 (664)
Q Consensus 517 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 596 (664)
|.+.|++++|+..+++++...+. +...|..+..+|...|++++|...|+++++ +.|+.......+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~------ 308 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK---NPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALA------ 308 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH------
Confidence 99999999999999999876654 678899999999999999999999999987 5676554444443321
Q ss_pred CCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 597 QDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 597 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
....+..+++.++|++|...
T Consensus 309 -------------~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 -------------EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------------------------
T ss_pred -------------HHHHHHHHHHHHHHHHhhCC
Confidence 33456778888899988764
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.98 E-value=0.00036 Score=72.18 Aligned_cols=174 Identities=10% Similarity=0.036 Sum_probs=133.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006010 382 KAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGK----------PDEAEEILFEMINNGCAANAFTYSSLMKGFFESG 451 (664)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 451 (664)
..++|++.++++...+.. +..+|+.-..++...|+ ++++.+.++.+++.. +.+..+|..-.-.+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 356778888888876433 45566666666666666 788888888888865 667788877777777888
Q ss_pred --ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHc--------
Q 006010 452 --KGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDG-KLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNA-------- 520 (664)
Q Consensus 452 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 520 (664)
+++++++.++++.+.+ +.+..+|+.-...+...| .++++++.++++++.. .-+..+|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 5689999999998877 567888888877788888 8899999999988764 33667788777776663
Q ss_pred ------CCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhH
Q 006010 521 ------GSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISH 562 (664)
Q Consensus 521 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 562 (664)
+.++++++.+++++..+|. |...|..+...+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~---~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN---DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS---CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC---CccHHHHHHHHHhcCCCccc
Confidence 5689999999999877776 77888888888877777544
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.98 E-value=7.4e-05 Score=61.40 Aligned_cols=29 Identities=14% Similarity=-0.015 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 006010 155 KSFNSVLNVIIQEGLYHRALEFYNHIVNA 183 (664)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 183 (664)
..+...+..+.+.|++++|+..|++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l 40 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI 40 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 45566677777788888888888887763
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.92 E-value=4.6e-05 Score=62.47 Aligned_cols=99 Identities=17% Similarity=0.107 Sum_probs=71.4
Q ss_pred CCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCC----------HHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHH
Q 006010 485 DGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGS----------VEEALKLFNEMLCLEPKSQPDVFTYNILLNAL 554 (664)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 554 (664)
.+.+++|++.++..++.. +.+...|..+..++...++ +++|+..|+++++++|. +...|..+..+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---~~~A~~~LG~ay 90 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---cHHHHHHHHHHH
Confidence 345666666666666643 2345666666666666554 46899999998877666 677888888888
Q ss_pred HHcC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 006010 555 CKQS-----------NISHSIDLLNSMMDRGCDPDLVTCNIFLTAL 589 (664)
Q Consensus 555 ~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 589 (664)
...| ++++|++.|+++++ +.|+...|...+..+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 7764 89999999999998 788887776666653
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.87 E-value=3.2e-05 Score=60.42 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC------
Q 006010 118 EKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN------ 191 (664)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------ 191 (664)
...+..++..+...|++++|++.|++.+.. .+.+...|..++.++.+.|++++|+..|+++++ ..|+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~ 76 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR-----YTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----SCSSTTSHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCCCccHHHH
Confidence 345666777777777777777777777654 345667777777777777888888877777766 2333
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHhhc
Q 006010 192 -TLTFNLVIKTVCRLGLVDNAIQLFREM 218 (664)
Q Consensus 192 -~~~~~~ll~~~~~~g~~~~A~~~~~~~ 218 (664)
...+..+..++...|+++.|.+.++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 334555555666666666665555544
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=3.5e-05 Score=60.19 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=47.4
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006010 506 DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDL 579 (664)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 579 (664)
+...+..+...+...|++++|+..|++++...+. +...|..+..++.+.|++++|+..++++++ +.|+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ---NPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCc
Confidence 3455666777777777777777777777655443 556677777777777777777777777776 44543
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.76 E-value=0.00066 Score=55.33 Aligned_cols=111 Identities=10% Similarity=-0.044 Sum_probs=71.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHH----cCCHHHH
Q 006010 451 GKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCN----AGSVEEA 526 (664)
Q Consensus 451 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 526 (664)
+++++|.+.|++..+.+ .+... +...|...+.+++|.+.|++..+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34566666666666655 22222 5555556666677777777776653 45566666666666 6777777
Q ss_pred HHHHHHhhhcCCCCCCCHhHHHHHHHHHHH----cCChhHHHHHHHHHHHCC
Q 006010 527 LKLFNEMLCLEPKSQPDVFTYNILLNALCK----QSNISHSIDLLNSMMDRG 574 (664)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 574 (664)
..+|+++. +.+ +...+..|...|.. .+++++|..++++..+.|
T Consensus 81 ~~~~~~Aa--~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKAC--GLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHH--HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH--cCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777773 223 55666667777766 677777777777777654
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.75 E-value=0.00028 Score=71.12 Aligned_cols=127 Identities=12% Similarity=0.004 Sum_probs=86.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHhC-----C-CCcC-HHhHH
Q 006010 446 GFFESGKGHKAVEIWKDMAKNN---CVY----NEVCYSVLIHGLCEDGKLREARMVWTQMLSR-----G-CKPD-VVAYS 511 (664)
Q Consensus 446 ~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~ 511 (664)
.+...|++++|+.++++..+.. ..+ ...+++.|...|...|++++|..++++.++. | -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456677777777777665421 112 2346777888888888888888888776642 2 2344 35688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhcCC---C-CCCC-HhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 512 SMIHGLCNAGSVEEALKLFNEMLCLEP---K-SQPD-VFTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 512 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
.|+..|...|++++|+.++++++.... | ..|+ ..+.+.+..++...+.+++|..+++++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998888853221 2 1122 23455566777888899999999999886
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.69 E-value=0.0003 Score=70.88 Aligned_cols=97 Identities=8% Similarity=-0.063 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCC-C
Q 006010 229 TYCTLMDGLCKENRLDEAVLLLDEMQVD-----G-CFPT-PVTFNVLINGLCKNGELGRAAKLVDNMFLK-----GCL-P 295 (664)
Q Consensus 229 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----g~~-p 295 (664)
+++.|..+|...|++++|+.++++.... | -.|+ ..+++.|...|...|++++|+.++++.... |.. |
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4455555555555555555555443321 1 0111 234555555555555555555555544321 221 1
Q ss_pred C-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010 296 N-EVTYNTLIHGLCLKGNLDKAVSLLDRMVA 325 (664)
Q Consensus 296 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (664)
+ ..+...+..++...+.+++|..+|..+.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12333444455555556666666655554
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.68 E-value=0.0005 Score=53.94 Aligned_cols=80 Identities=10% Similarity=0.004 Sum_probs=60.8
Q ss_pred chHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 006010 100 KSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNH 179 (664)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 179 (664)
+.+...|+.+.+..+ .+...+..++.+|...|++++|+..|++.+.. .+.+...|..++.++...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356677777776653 36677888888888888888888888887765 345677788888888888888888888888
Q ss_pred HHh
Q 006010 180 IVN 182 (664)
Q Consensus 180 ~~~ 182 (664)
..+
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.66 E-value=0.00011 Score=60.16 Aligned_cols=99 Identities=10% Similarity=0.039 Sum_probs=74.6
Q ss_pred hCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 006010 95 NSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLV----------EEAIRLFHTMVDEFHCKRTVKSFNSVLNVI 164 (664)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (664)
+.+.+++|.+.+++..+.++. +...|..+..++...+++ ++|+..|++.++. .+....+|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 345678888888888887744 777888788788777654 5899999988775 455678888899988
Q ss_pred HHcC-----------CHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHH
Q 006010 165 IQEG-----------LYHRALEFYNHIVNAKHMNILPNTLTFNLVIKT 201 (664)
Q Consensus 165 ~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 201 (664)
...| ++++|++.|+++++ +.|+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~-----l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD-----EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH-----HCTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH-----hCCCCHHHHHHHHH
Confidence 8764 78899999998887 56766666555443
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.65 E-value=0.00095 Score=54.40 Aligned_cols=12 Identities=17% Similarity=0.575 Sum_probs=4.7
Q ss_pred HhHHHHHHHHHH
Q 006010 170 YHRALEFYNHIV 181 (664)
Q Consensus 170 ~~~A~~~~~~~~ 181 (664)
+++|..+|++..
T Consensus 11 ~~~A~~~~~~aa 22 (138)
T 1klx_A 11 LKKAIQYYVKAC 22 (138)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.61 E-value=0.00032 Score=55.07 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 006010 490 EARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNS 569 (664)
Q Consensus 490 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 569 (664)
+|+..|++.++.. +.+...+..+...+...|++++|+..|++++...+. +...|..+..+|...|++++|...|++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT---YSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556666666542 234556666677777777777777777777654443 455666666677777777777777776
Q ss_pred HHH
Q 006010 570 MMD 572 (664)
Q Consensus 570 ~~~ 572 (664)
..+
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.55 E-value=0.00083 Score=49.78 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHH
Q 006010 474 CYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNA 553 (664)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 553 (664)
.+..+...+...|++++|...+++.++.. +.+...+..+..++...|++++|...+++++...+. +...+..+..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~ 86 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CHHHHHHHHHH
Confidence 44445555555555555555555555432 223445555555555666666666666655443332 33444444444
Q ss_pred HH
Q 006010 554 LC 555 (664)
Q Consensus 554 ~~ 555 (664)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.49 E-value=0.00032 Score=53.40 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=36.0
Q ss_pred ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006010 82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVD 146 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 146 (664)
++.++..+...+...|++++|...|+++++.++. ...++..+..+|...|++++|++.|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555556666666666666666665555433 333555555666666666666666555543
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.48 E-value=0.0013 Score=48.66 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006010 85 TFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVD 146 (664)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 146 (664)
.+..+...+...|++++|...++++....+ .+...+..+..++...|++++|+..|++.+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 444444444455555555555555444332 2334444444444455555555555544433
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.40 E-value=0.00072 Score=51.42 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=52.3
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010 115 VVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 182 (664)
+.+..++..++.+|...|++++|++.|++.++. .+.+..+|..+..++...|++++|...|++.++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345667888888888888888888888888765 344567888888888888888888888888765
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.96 E-value=0.011 Score=55.95 Aligned_cols=74 Identities=12% Similarity=-0.064 Sum_probs=57.7
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 006010 189 LPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFN 266 (664)
Q Consensus 189 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 266 (664)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 3456677777666777799999999999888875 67777878888888899999999999888775 46666654
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.90 E-value=0.014 Score=55.27 Aligned_cols=74 Identities=15% Similarity=0.111 Sum_probs=56.0
Q ss_pred CcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006010 504 KPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCN 583 (664)
Q Consensus 504 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 583 (664)
+.+..+|..+...+...|++++|...+++++.++ |+...|..+...+.-.|++++|.+.++++.. +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln----~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE----MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 4456677777776777788888888888887653 5666677777788888888888888888887 677776653
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.88 E-value=0.0048 Score=46.49 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=37.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010 124 IFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVK-SFNSVLNVIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~ 182 (664)
.+..+...|++++|++.|+..++. .+.+.. .+..++.++...|++++|...|+++++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445566667777777777776554 334555 666777777777777777777777766
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.84 E-value=0.0059 Score=45.99 Aligned_cols=56 Identities=29% Similarity=0.414 Sum_probs=26.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHh-HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 514 IHGLCNAGSVEEALKLFNEMLCLEPKSQPDVF-TYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 514 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
+..+...|++++|+..|++++...+. +.. .|..+..+|...|++++|...|++.++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV---GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS---THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444555555555555555433222 333 444444555555555555555555544
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.84 E-value=0.0096 Score=58.96 Aligned_cols=99 Identities=7% Similarity=0.014 Sum_probs=70.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhcCCCC-CCC----HhHHHHHHHHHHHcCChhHHHHHHHHHHHC---CCCCCHHHHHHH
Q 006010 514 IHGLCNAGSVEEALKLFNEMLCLEPKS-QPD----VFTYNILLNALCKQSNISHSIDLLNSMMDR---GCDPDLVTCNIF 585 (664)
Q Consensus 514 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l 585 (664)
+..+.+.|++++|+.++++++...... .|+ ..+++.++.+|...|++++|+.+++++++. -..|+.......
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344567889999999999986543221 122 347888999999999999999999988841 233443332222
Q ss_pred HHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 586 LTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 586 l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
+ ..|+.+|...|++++|..+++++.+-
T Consensus 374 l-----------------~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 V-----------------MKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp H-----------------HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H-----------------HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2 23556699999999999999998764
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.83 E-value=0.0041 Score=61.47 Aligned_cols=93 Identities=8% Similarity=-0.020 Sum_probs=63.8
Q ss_pred cCCHHHHHHHHHHhhhcCCC----CCCC-HhHHHHHHHHHHHcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHhhhh
Q 006010 520 AGSVEEALKLFNEMLCLEPK----SQPD-VFTYNILLNALCKQSNISHSIDLLNSMMD---RGCDPDLVTCNIFLTALKE 591 (664)
Q Consensus 520 ~g~~~~A~~~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~ll~~~~~ 591 (664)
.|++++|+.++++.+..... ..|+ ..+++.+..+|...|++++|+.+++++++ .-..|+.......+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l----- 385 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW----- 385 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH-----
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH-----
Confidence 46778888887777543221 1122 34788889999999999999999998874 12334433322222
Q ss_pred hccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 592 KLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 592 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
..|+.+|...|++++|..+++++.+-
T Consensus 386 ------------~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 386 ------------LKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp ------------HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 23556699999999999999998764
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.77 E-value=0.024 Score=41.88 Aligned_cols=67 Identities=10% Similarity=0.056 Sum_probs=51.5
Q ss_pred CCChhHHHHHHHHHHhCCC---cchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010 80 QLGDSTFYSLIQHYANSGD---FKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE 147 (664)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 147 (664)
+.++..+..+..++...++ .++|..+++++++.++. +..++..+...+.+.|++++|+..|+.+++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3467777777777764444 68888888888887743 7778888888888888888888888888765
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.74 E-value=0.024 Score=41.95 Aligned_cols=65 Identities=15% Similarity=0.032 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 006010 470 YNEVCYSVLIHGLCEDGK---LREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLC 535 (664)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (664)
.+...+..+..++...++ .++|..++++.+... +-+......+...+...|++++|+..|++++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444432222 455555555555432 12234444455555555555555555555543
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.68 E-value=0.28 Score=44.51 Aligned_cols=127 Identities=15% Similarity=0.122 Sum_probs=83.9
Q ss_pred cCChhHHHHHHhhcccCCCCCCHHHHHHHHHH-HHh--cCC------hhHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 006010 205 LGLVDNAIQLFREMPVRNCEPDIYTYCTLMDG-LCK--ENR------LDEAVLLLDEMQVDGCFPT---PVTFNVLINGL 272 (664)
Q Consensus 205 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~--~g~------~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~ 272 (664)
.|+..+-.+.+.+.... .+....|..++.. +.. .|+ ...|...+++..+. .|+ ...|..+...|
T Consensus 134 ~~~~~~~~~~l~~~~~~--dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY 209 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRV--DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFY 209 (301)
T ss_dssp SSCHHHHHHHHTTCCGG--GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCcc--ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHH
Confidence 34444555555555433 1223345555442 222 233 35677777777774 455 55788888888
Q ss_pred Hh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCC--CChhhH
Q 006010 273 CK-----NGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLK-GNLDKAVSLLDRMVASKCM--PNEVTY 335 (664)
Q Consensus 273 ~~-----~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~--~~~~~~ 335 (664)
.+ -|+.++|.+.|++.+..+..-+..++......++.. |+.+++.+.+++.+..... |+....
T Consensus 210 ~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~la 280 (301)
T 3u64_A 210 AAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLL 280 (301)
T ss_dssp HHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHH
T ss_pred HhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHH
Confidence 88 489999999999998875433467777788888884 8999999999999987544 444333
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.66 E-value=0.0097 Score=58.94 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=50.1
Q ss_pred HHhcCCHHHHHHHHHHhhhcCC--C----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcc---cCCCCcCH-HHHHH
Q 006010 128 YGKAHLVEEAIRLFHTMVDEFH--C----KRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAK---HMNILPNT-LTFNL 197 (664)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~-~~~~~ 197 (664)
+.+.|++++|+.++++.+.... . +....+++.++..|...|++++|+.++++++... -....|++ .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 4455666666666666543211 1 1123456666666666666666666666654321 01223333 35666
Q ss_pred HHHHHHhcCChhHHHHHHhhcc
Q 006010 198 VIKTVCRLGLVDNAIQLFREMP 219 (664)
Q Consensus 198 ll~~~~~~g~~~~A~~~~~~~~ 219 (664)
+...|...|++++|..++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666666666666666553
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.15 Score=42.43 Aligned_cols=99 Identities=11% Similarity=0.108 Sum_probs=54.2
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCCh
Q 006010 129 GKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLV 208 (664)
Q Consensus 129 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 208 (664)
...|+++.|.++.+.+ .+...|..+.......|+++-|.++|.+... +..+.-.|.-.|+.
T Consensus 16 L~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS------------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------HHHHHHHHHHHTCH
T ss_pred HhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------------HHHHHHHHHHhCCH
Confidence 4566666666665544 2455666666666666666666666666533 34444455555665
Q ss_pred hHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006010 209 DNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDE 252 (664)
Q Consensus 209 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 252 (664)
+.-.++-+.....| -++.....+.-.|+++++.++|.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55554444433333 133334444555666666666543
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.57 E-value=0.39 Score=43.53 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcC-----CChHHHHHHHHHHHhCCCCc--CHHhHHHHHHHHHHc-CC
Q 006010 454 HKAVEIWKDMAKNNCVYN---EVCYSVLIHGLCED-----GKLREARMVWTQMLSRGCKP--DVVAYSSMIHGLCNA-GS 522 (664)
Q Consensus 454 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g~ 522 (664)
..|...+++..+.+ |+ ...|..+...|... |+.++|.+.|++.++. .| +..++......++.. |+
T Consensus 180 ~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 180 HAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCC
Confidence 44555555555544 33 34566666666653 6666666666666653 33 244555555555553 66
Q ss_pred HHHHHHHHHHhhhcCCCCCCCH
Q 006010 523 VEEALKLFNEMLCLEPKSQPDV 544 (664)
Q Consensus 523 ~~~A~~~~~~~~~~~~~~~~~~ 544 (664)
.++|.+.+++++...+...|+.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHHHHcCCCCCCCCh
Confidence 6666666666654333333443
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.54 E-value=0.007 Score=59.82 Aligned_cols=86 Identities=6% Similarity=-0.109 Sum_probs=37.6
Q ss_pred CCHhHHHHHHHHHHhcccCCCCcC----HHHHHHHHHHHHhcCChhHHHHHHhhcccC-----C-CCCC-HHHHHHHHHH
Q 006010 168 GLYHRALEFYNHIVNAKHMNILPN----TLTFNLVIKTVCRLGLVDNAIQLFREMPVR-----N-CEPD-IYTYCTLMDG 236 (664)
Q Consensus 168 ~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~~ 236 (664)
|++++|+.++++.++....-+.|+ ..+++.+..+|...|++++|+.++++.+.. | -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 455666666655544221222222 124455555555555555555555444321 1 0111 2234444444
Q ss_pred HHhcCChhHHHHHHHHH
Q 006010 237 LCKENRLDEAVLLLDEM 253 (664)
Q Consensus 237 ~~~~g~~~~a~~~~~~~ 253 (664)
|...|++++|+.++++.
T Consensus 392 ~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 392 YMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHH
Confidence 44555555544444443
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.43 E-value=0.031 Score=45.23 Aligned_cols=93 Identities=8% Similarity=0.057 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcC---CHHHHHHHHHHhhhcCCCCCC--CHhHHHHHHHHHHHcCChhHH
Q 006010 489 REARMVWTQMLSRGCKPDVVAYSSMIHGLCNAG---SVEEALKLFNEMLCLEPKSQP--DVFTYNILLNALCKQSNISHS 563 (664)
Q Consensus 489 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 563 (664)
..+.+-|.+....+ .++..+...+..++++.+ ++++++.++++.+..+ .| +...+..+.-+|.+.|++++|
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~---~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG---SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CccchHHHHHHHHHHHHHccCHHHH
Confidence 34444555554444 255666666666666666 4556666666665322 12 233444555566677777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHH
Q 006010 564 IDLLNSMMDRGCDPDLVTCNIFLT 587 (664)
Q Consensus 564 ~~~~~~~~~~~~~p~~~~~~~ll~ 587 (664)
.+.++++++ +.|+..--..+..
T Consensus 91 ~~y~~~lL~--ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHh--cCCCCHHHHHHHH
Confidence 777777766 5665544433333
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.41 E-value=0.073 Score=58.27 Aligned_cols=152 Identities=14% Similarity=0.159 Sum_probs=90.4
Q ss_pred HHhcCCHHHHHH-HHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcC
Q 006010 128 YGKAHLVEEAIR-LFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLG 206 (664)
Q Consensus 128 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 206 (664)
....+++++|.+ ++..+ ++......++..+.+.|..++|+++.+.... -.......|
T Consensus 609 ~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~---------------~f~~~l~~~ 666 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQDQ---------------KFELALKVG 666 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHHH---------------HHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCcch---------------heehhhhcC
Confidence 345677887766 44221 1122336677777778888877765532111 123345678
Q ss_pred ChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006010 207 LVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVD 286 (664)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 286 (664)
+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...|...|+.+...++.+
T Consensus 667 ~~~~A~~~~~~~~------~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 667 QLTLARDLLTDES------AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp CHHHHHHHHTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHhhC------cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHH
Confidence 8888888876553 567788888888888888888888887653 3445555555666666555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006010 287 NMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDR 322 (664)
Q Consensus 287 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 322 (664)
.....|. ++....++.+.|++++|.+++.+
T Consensus 732 ~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 732 DAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444331 22233334445666665555444
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.32 E-value=7.3e-07 Score=85.27 Aligned_cols=265 Identities=12% Similarity=0.081 Sum_probs=164.8
Q ss_pred ChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 006010 82 GDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVL 161 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 161 (664)
.+++|..+..+....++..+|+..| .+.+ ++..|..++.+..+.|.+++-++.+... ++. ..++..=+.++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy---IkA~---Dps~y~eVi~~A~~~~~~edLv~yL~Ma-Rk~--~ke~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY---IKAD---DPSSYMEVVQAANTSGNWEELVKYLQMA-RKK--ARESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS---CCCS---CCCSSSHHHHHTTTSSCCTTHHHHHHTT-STT--CCSTTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH---HhCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHH-HHH--hcccccHHHHH
Confidence 5678888888888888777765433 2222 3336777888888888888888887654 332 23333446788
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcC
Q 006010 162 NVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKEN 241 (664)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 241 (664)
-+|++.++..+-.+++ ..||..-...+..-|...|.++.|.-+|..+... .-|...+.+.|
T Consensus 124 ~ayAk~~rL~elEefl----------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~---------akLAstLV~L~ 184 (624)
T 3lvg_A 124 FALAKTNRLAELEEFI----------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF---------GRLASTLVHLG 184 (624)
T ss_dssp HHHHTSCSSSTTTSTT----------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC---------TTTSSSSSSCS
T ss_pred HHHHhhCcHHHHHHHH----------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccH---------HHHHHHHHHHH
Confidence 8888888766544332 1256666667778888888888888887776543 23444566777
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006010 242 RLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLD 321 (664)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 321 (664)
++..|.+.-+ +. .++.||..+-.+|...+++.-|.-.--.++-. || -...++..|-..|.+++-+.+++
T Consensus 185 ~yq~AVdaAr---KA---ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlE 253 (624)
T 3lvg_A 185 EYQAAVDGAR---KA---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLE 253 (624)
T ss_dssp GGGSSTTTTT---TC---CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHH
T ss_pred HHHHHHHHHH---hc---CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHH
Confidence 7777765432 22 36678888888999999888776665554422 11 22345666778888888888888
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC------CHHHHHHHHHHHHhcCChHHHH
Q 006010 322 RMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEER-KFHV------NEYIYSTLISGLFKEGKAEDAM 387 (664)
Q Consensus 322 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~ 387 (664)
...... ....-.|+-|.-.|++- +.++..+.++..-.+ +++- ....|..++..|..-.+++.|.
T Consensus 254 aglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 254 AALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 876432 34566777777777764 344444443332221 1111 1234555555555555555443
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.16 E-value=0.053 Score=41.14 Aligned_cols=63 Identities=10% Similarity=0.049 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010 120 SFIFIFKAYGKAHLVEEAIRLFHTMVDEFH-----CKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 182 (664)
....++..+.+.|+++.|+.+|+..++... .......+..+..++.+.|++++|...++++++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344555555556666666666555544221 122345566666666666666666666666655
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.11 E-value=0.049 Score=44.03 Aligned_cols=80 Identities=9% Similarity=0.035 Sum_probs=41.9
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 006010 102 LEMVLYRMRREKRVVLEKSFIFIFKAYGKAH---LVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYN 178 (664)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 178 (664)
+++.|......+. ++..+...+..++.+.+ +.++++.+|+.+.+..........+..+..++.+.|++++|++.++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3444444444332 35555555565666655 4446666666655431000123445555555666666666666666
Q ss_pred HHHh
Q 006010 179 HIVN 182 (664)
Q Consensus 179 ~~~~ 182 (664)
.+++
T Consensus 96 ~lL~ 99 (152)
T 1pc2_A 96 GLLQ 99 (152)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6665
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.09 E-value=0.045 Score=41.56 Aligned_cols=67 Identities=12% Similarity=0.108 Sum_probs=58.0
Q ss_pred CChhHHHHHHHHHHhCCCcchHHHHHHHHHhCC------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010 81 LGDSTFYSLIQHYANSGDFKSLEMVLYRMRREK------RVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE 147 (664)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 147 (664)
.++..+..+...+...|++..|...|+.+.+.. ......++..+..++.+.|+++.|+..++..++.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 577889999999999999999999999988641 2345678899999999999999999999999764
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.00 E-value=0.14 Score=56.00 Aligned_cols=156 Identities=16% Similarity=0.151 Sum_probs=98.2
Q ss_pred HHHHHhCCCcchHHH-HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcC
Q 006010 90 IQHYANSGDFKSLEM-VLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEG 168 (664)
Q Consensus 90 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (664)
.......++++.|.. ++..+. +......++..+.+.|..++|+++.+. +. .-.....+.|
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~--------~~-----~~f~~~l~~~ 666 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD--------QD-----QKFELALKVG 666 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC--------HH-----HHHHHHHHHT
T ss_pred HhHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC--------cc-----hheehhhhcC
Confidence 445567888888866 441111 023346777777888888888875421 11 1133456778
Q ss_pred CHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006010 169 LYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVL 248 (664)
Q Consensus 169 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 248 (664)
++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.. |..+...+...|+.+...+
T Consensus 667 ~~~~A~~~~~~~---------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 667 QLTLARDLLTDE---------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp CHHHHHHHHTTC---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHhh---------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 899888886544 2567888889999999999999999987652 3344455555666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010 249 LLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM 288 (664)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (664)
+-+.....| -++....+|.+.|++++|++++.++
T Consensus 729 ~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 555555443 1233344455566666666666554
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.74 E-value=0.07 Score=42.45 Aligned_cols=100 Identities=10% Similarity=0.026 Sum_probs=64.7
Q ss_pred CChhHHHHHHHHHHhCCCc------chHHHHHHHHHhCCCCcCHHHHHHHHH------HHHhcCCHHHHHHHHHHhhhcC
Q 006010 81 LGDSTFYSLIQHYANSGDF------KSLEMVLYRMRREKRVVLEKSFIFIFK------AYGKAHLVEEAIRLFHTMVDEF 148 (664)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~~~ 148 (664)
.|+++|...+..+-+.|++ +..+.+|+++...-++.....|...+. .+...++.++|.++|+.++..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~- 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN- 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence 4788999999988888998 888888988887543321111111111 112346777777777776543
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006010 149 HCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVN 182 (664)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 182 (664)
++.=...|....+.-+++|+...|.+++...+.
T Consensus 90 -hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 90 -CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp -CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 222266677777777777777777777777766
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.54 E-value=0.16 Score=40.49 Aligned_cols=103 Identities=10% Similarity=0.124 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCH------hHHHHHHHHHHhcccCCCCcCHH-HHHHHHHHH------HhcCChhHHHHHHh
Q 006010 150 CKRTVKSFNSVLNVIIQEGLY------HRALEFYNHIVNAKHMNILPNTL-TFNLVIKTV------CRLGLVDNAIQLFR 216 (664)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~------~~~g~~~~A~~~~~ 216 (664)
.+.|.++|-..+..+-+.|+. ++.+++|+++.. .++|+.. .|...+..+ ...++.++|+++|+
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia----~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE----ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQ 84 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH----HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH----cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 356778888888888777888 788888888776 3445421 111111111 22355666666666
Q ss_pred hcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006010 217 EMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDG 257 (664)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 257 (664)
.+.+.+ +.=...|......-.++|++..|.+++......+
T Consensus 85 ~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 85 MARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 554432 1114445555555555566666666665555544
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.99 Score=37.49 Aligned_cols=100 Identities=17% Similarity=0.223 Sum_probs=46.8
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 006010 413 CRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREAR 492 (664)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 492 (664)
...|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|..... +..+.-.|...|+.++-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3445555555554443 1345555555555555555555555554432 222333344445544444
Q ss_pred HHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHh
Q 006010 493 MVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEM 533 (664)
Q Consensus 493 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (664)
++-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4433333322 1223333344456666666666544
No 232
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.25 E-value=0.26 Score=40.20 Aligned_cols=62 Identities=5% Similarity=0.081 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHhC---CCCc-CH----HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006010 85 TFYSLIQHYANSGDFKSLEMVLYRMRRE---KRVV-LE----KSFIFIFKAYGKAHLVEEAIRLFHTMVD 146 (664)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 146 (664)
++..-++.+...|.++.|+.+.+-+... +... ++ .++..++.++...|.+..|...|++.++
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4444556666666666666665554432 1110 11 1344555556666666666666666543
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.10 E-value=0.89 Score=35.39 Aligned_cols=140 Identities=11% Similarity=0.044 Sum_probs=80.7
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCCh
Q 006010 129 GKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLV 208 (664)
Q Consensus 129 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 208 (664)
.-.|..++..++..+... +.+..-+|.++--....-+-+-..++++.+-+. + |. ...|+.
T Consensus 18 ildG~v~qGveii~k~~~----ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----F--Di----------s~C~Nl 77 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITK----SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY----F--DL----------DKCQNL 77 (172)
T ss_dssp HHTTCHHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----S--CG----------GGCSCT
T ss_pred HHhhhHHHHHHHHHHHcC----CCCccccceeeeecchhhchhHHHHHHHHHhhh----c--Cc----------HhhhcH
Confidence 345777777777777653 234455565665555555555555555555320 1 11 123444
Q ss_pred hHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010 209 DNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNM 288 (664)
Q Consensus 209 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (664)
......+-.+-. +.......+..+...|+-++-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.+.
T Consensus 78 KrVi~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 78 KSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp HHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 444444433322 234455566666777777777777777533 23566666777777777777777777777777
Q ss_pred HHcCCC
Q 006010 289 FLKGCL 294 (664)
Q Consensus 289 ~~~g~~ 294 (664)
-+.|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 777654
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.09 E-value=3.3e-06 Score=80.90 Aligned_cols=235 Identities=11% Similarity=0.161 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006010 367 EYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKG 446 (664)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 446 (664)
...|..+..+..+.+++.+|++.|-+. .|+..|..++.+..+.|.+++-..++....+.. .++..=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 346777777777777777776654221 255667777788888888888887777666552 334444677778
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHH
Q 006010 447 FFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEA 526 (664)
Q Consensus 447 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 526 (664)
|++.++..+-.+++. .||..-...+..-|...|.++.|.-+|..+- -|..|...+.+.|+++.|
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHH
Confidence 888777665444321 3566566667777777777777766654432 233344445566777666
Q ss_pred HHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHH
Q 006010 527 LKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNEL 606 (664)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l 606 (664)
.+.-+++ + +..+|..+-.+|...+.+.-|.-.--.++ +.||. +++|
T Consensus 190 VdaArKA-----n---s~ktWKeV~~ACvd~~EfrLAqicGLniI---vhade-----------------------L~el 235 (624)
T 3lvg_A 190 VDGARKA-----N---STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE-----------------------LEEL 235 (624)
T ss_dssp TTTTTTC-----C---SSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC-----------------------CSGG
T ss_pred HHHHHhc-----C---ChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHH-----------------------HHHH
Confidence 6554433 2 55677777777777777665554444443 22221 1111
Q ss_pred HHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcc--cchHHHHHHHHHh
Q 006010 607 AIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCR--PKRIQAAINKCWS 660 (664)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~ 660 (664)
...|-..|.+++-+.+++..... -+....++..|+-.|++ ..++-|=++.||+
T Consensus 236 v~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY~PeKlmEHlklf~s 290 (624)
T 3lvg_A 236 INYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKPQKMREHLELFWS 290 (624)
T ss_dssp GSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSSCTTHHHHHHTTSSS
T ss_pred HHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 11166677777766666666532 13345666666666643 3455555555554
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.76 E-value=1.1 Score=34.86 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=98.9
Q ss_pred HHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006010 406 SALIDG--LCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLC 483 (664)
Q Consensus 406 ~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 483 (664)
..|+.+ +.-.|..++..++..+..+. .+..-++-++.-....-+-+-..++++.+-+. .|. .
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s 72 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------D 72 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------G
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------H
Confidence 334443 34568888888888887764 35566666666555555666666666655442 221 2
Q ss_pred cCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHH
Q 006010 484 EDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHS 563 (664)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 563 (664)
..|+.......+-.+ ..+.......+..+...|.-++-.+++..++ . +.+|++...-.+..+|.+.|+..+|
T Consensus 73 ~C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l--~-n~~~~~~~l~kia~Ay~Klg~~r~a 144 (172)
T 1wy6_A 73 KCQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREIL--K-NNEVSASILVAIANALRRVGDERDA 144 (172)
T ss_dssp GCSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHh--c-cCCCChHHHHHHHHHHHHhcchhhH
Confidence 345555555444332 2244455666778888999999999998863 2 4667888888899999999999999
Q ss_pred HHHHHHHHHCCCC
Q 006010 564 IDLLNSMMDRGCD 576 (664)
Q Consensus 564 ~~~~~~~~~~~~~ 576 (664)
.++++++-+.|++
T Consensus 145 ~eLl~~AC~kG~k 157 (172)
T 1wy6_A 145 TTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhH
Confidence 9999999988864
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.69 E-value=0.26 Score=38.26 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=10.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhh
Q 006010 513 MIHGLCNAGSVEEALKLFNEMLC 535 (664)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~ 535 (664)
+.-++.+.|++++|.++++.+++
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.64 E-value=3.8 Score=40.50 Aligned_cols=97 Identities=15% Similarity=0.139 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhC--CCCcC---HHhHHHHHHHHHHcCCHHHHHHHHHHhhhc--CCCCCCC--HhH
Q 006010 476 SVLIHGLCEDGKLREARMVWTQMLSR--GCKPD---VVAYSSMIHGLCNAGSVEEALKLFNEMLCL--EPKSQPD--VFT 546 (664)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~--~~~ 546 (664)
..|...+...|++.+|..++..+... |..+. ...+...++.|...+++.+|..++.++... .....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45666777778888888777776532 21111 235556677777888888888887776211 1111121 224
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 547 YNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 547 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
+...+..+...+++.+|...|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 55566667778888888877777764
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.08 E-value=0.17 Score=39.28 Aligned_cols=67 Identities=7% Similarity=0.046 Sum_probs=41.0
Q ss_pred CChhHHHHHHHHHHhCCCcch---HHHHHHHHHhCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010 81 LGDSTFYSLIQHYANSGDFKS---LEMVLYRMRREKRV-VLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE 147 (664)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 147 (664)
++..+-+.+..++.++++... ++.+++.+.+.+.+ ........++.++.+.|++++|++.++.+++.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 566666666666666665555 56666666655411 34445556666666777777777777666654
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.95 E-value=8.3 Score=41.64 Aligned_cols=269 Identities=13% Similarity=0.119 Sum_probs=146.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-------CCCHHHHHHHHHH
Q 006010 306 GLCLKGNLDKAVSLLDRMVASKCMPNE--VTYGTIINGLVKLGRAVDGARVLMSMEERKF-------HVNEYIYSTLISG 376 (664)
Q Consensus 306 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~ 376 (664)
+....|+.++++.+++.....+-..+. ..-..+.-+....|...++...+.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 455678888888777766542101122 2223344455566666677777766554321 0111112223333
Q ss_pred HHhcCC-hHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcC
Q 006010 377 LFKEGK-AEDAMKLWKQMMEKGCKPNT--VVYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSL--MKGFFESG 451 (664)
Q Consensus 377 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~ 451 (664)
+.-.|. -+++.+.+..+....- +.. ..--++...++..|+.+....++..+.+.. +..+...+ .-++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 333332 2456666666655321 111 111233344556788887788887777642 33333333 33445778
Q ss_pred ChHHHHHHHHHHHHCCCCCCHH-HHH---HHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHH
Q 006010 452 KGHKAVEIWKDMAKNNCVYNEV-CYS---VLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEAL 527 (664)
Q Consensus 452 ~~~~a~~~~~~~~~~~~~~~~~-~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 527 (664)
+.+.+..+.+.+.... +.. -|. .+.-+|+..|+.....+++..+... ...+......+.-++...|+.+.+.
T Consensus 539 ~~e~~~~li~~L~~~~---dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 539 RQELADDLITKMLASD---ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp CGGGGHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred ChHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 8888888888887632 222 232 3455677888988888899888864 2233333334444555667776677
Q ss_pred HHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 006010 528 KLFNEMLCLEPKSQPDVFTYNILLNALCKQSNI-SHSIDLLNSMMDRGCDPDLVTCNIFLTA 588 (664)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 588 (664)
++++.+. +. ..|....-..+.-+....|+. .+|++.+..+.. .+|..+-...+.+
T Consensus 615 rlv~~L~--~~-~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 615 RIVQLLS--KS-HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIA 670 (963)
T ss_dssp HHTTTGG--GC-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHH--hc-CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHH
Confidence 7776552 22 233333333333444445554 578889999873 5666654444444
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.82 E-value=5.2 Score=39.53 Aligned_cols=97 Identities=19% Similarity=0.154 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCH--
Q 006010 229 TYCTLMDGLCKENRLDEAVLLLDEMQVD--GCFPT---PVTFNVLINGLCKNGELGRAAKLVDNMFL----KGCLPNE-- 297 (664)
Q Consensus 229 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~g~~p~~-- 297 (664)
....|...+...|++.+|.+++..+... |.... ...+...++.|...+++.+|..++.++.. ....|+.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3455777788888888888888877542 21111 23555667778888888888887777532 2222221
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006010 298 VTYNTLIHGLCLKGNLDKAVSLLDRMVA 325 (664)
Q Consensus 298 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (664)
..+...+..+...+++.+|-..|.++..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2445556666677777777776666543
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.77 E-value=2.6 Score=47.67 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=32.2
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006010 88 SLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTM 144 (664)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 144 (664)
.++..+...+.++.+..+...+.. +...-..++.++...|++++|.+.|.+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 355566666777666554433221 2333456677777888888888888765
No 242
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.65 E-value=1.3 Score=42.67 Aligned_cols=98 Identities=4% Similarity=-0.090 Sum_probs=55.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHH
Q 006010 549 ILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQ 628 (664)
Q Consensus 549 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (664)
.++..|...|++.+|.+++.++.+.-...|..++..=+.. .-...|...|++.++..++..+..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~l----------------le~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQL----------------LESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHH----------------HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHH----------------HHHHHHHHhccHHHHHHHHHHHHh
Confidence 4667777788888888777777753222222222111111 112337777788888877777654
Q ss_pred c--CCCCChHHH----HHHHHHhc-ccchHHHHHHHHHhhh
Q 006010 629 K--FLSPQTSTW----ERVVQELC-RPKRIQAAINKCWSNL 662 (664)
Q Consensus 629 ~--~~~~~~~~~----~~l~~~~~-~~g~~~~A~~~~~~~l 662 (664)
. .+.++|.+. ..-+..+. ..|++++|.+.|-+.+
T Consensus 168 ~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 168 TANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 4 233444332 23344555 6788888877776543
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.32 E-value=1.1 Score=35.41 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=57.6
Q ss_pred CCChhHHHHHHHHHHhCCCcc---hHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010 80 QLGDSTFYSLIQHYANSGDFK---SLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE 147 (664)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 147 (664)
.+++.+-+....++.++.+.. .+..+++.+.+.++.........++.++.+.|++++|++..+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 578999999999999987654 67788888888766556778888999999999999999999999874
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.28 E-value=7 Score=36.11 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHH
Q 006010 261 TPVTFNVLINGLCKNGELGRAAKLVD 286 (664)
Q Consensus 261 ~~~~~~~li~~~~~~g~~~~a~~~~~ 286 (664)
++.....+...|.+.|++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56667777777778888777776654
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.24 E-value=7.3 Score=36.25 Aligned_cols=81 Identities=5% Similarity=-0.006 Sum_probs=47.0
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHH
Q 006010 543 DVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKI 622 (664)
Q Consensus 543 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 622 (664)
|+.....+...|.+.+++.+|...|- . |..+....+..++-.+..... +.+...|+..-+..|.-.++...|..+
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~-~~e~dlfiaRaVL~yL~l~n~~~A~~~ 209 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDE-SHTAPLYCARAVLPYLLVANVRAANTA 209 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSC-GGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 55556666666777777766666552 1 233333455444444433322 334444555555567788888888887
Q ss_pred HHHHHH
Q 006010 623 VEVMLQ 628 (664)
Q Consensus 623 ~~~~~~ 628 (664)
++...+
T Consensus 210 ~~~f~~ 215 (336)
T 3lpz_A 210 YRIFTS 215 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.18 E-value=7.2 Score=36.03 Aligned_cols=66 Identities=11% Similarity=0.200 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHH
Q 006010 404 VYSALIDGLCRVGKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGKGHKAVEI----WKDMAKNNCVYNEVCYSVLI 479 (664)
Q Consensus 404 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~ 479 (664)
.|..+..-|.+.+++++|.+++..-.. .+.+.|+...|.++ .+-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344555556666777777766544321 23344554444332 33334445566666666665
Q ss_pred HHHHc
Q 006010 480 HGLCE 484 (664)
Q Consensus 480 ~~~~~ 484 (664)
..+..
T Consensus 100 ~l~~~ 104 (312)
T 2wpv_A 100 RLIAE 104 (312)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 55544
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.17 E-value=0.86 Score=35.50 Aligned_cols=68 Identities=12% Similarity=0.054 Sum_probs=56.2
Q ss_pred CCChhHHHHHHHHHHhCCCc---chHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 006010 80 QLGDSTFYSLIQHYANSGDF---KSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDE 147 (664)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 147 (664)
.+++.+-.....++.++.+. ..++.+++.+.+.++......+..++.++.+.|++++|++..+.+++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 57888888899999988765 467888888887775556778888999999999999999999998874
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.74 E-value=1.2 Score=46.91 Aligned_cols=126 Identities=12% Similarity=0.033 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHC------CCCC-CH----
Q 006010 406 SALIDGLCRVGK-PDEAEEILFEMINNGCAANAFTYSSLMKGFFESG-KGHKAVEIWKDMAKN------NCVY-NE---- 472 (664)
Q Consensus 406 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~---- 472 (664)
..++..+...++ .+.|..+++++.......+......++..+...+ +--+|.+++.+..+. ..++ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344454444555 4778888888877631112222223333333332 223455555554321 1111 11
Q ss_pred ------HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHHcCCHHHHHHHHHHh
Q 006010 473 ------VCYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD-VVAYSSMIHGLCNAGSVEEALKLFNEM 533 (664)
Q Consensus 473 ------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (664)
.....=...+...|+++-|+++-++.+.. .|+ -.+|..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 01111233445667777777777777764 444 567777777777777777777777766
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.66 E-value=0.67 Score=37.80 Aligned_cols=118 Identities=12% Similarity=0.057 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-------HHHHHHHHHHHHHcCCHhHHHHHHHHHHhccc----
Q 006010 117 LEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRT-------VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKH---- 185 (664)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---- 185 (664)
...++..-++.+...|.++.|+-+...++...+.+++ ..+...++.++...|+|.+|...|+++++...
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3446677777788889999998888776554333444 23667788899999999999999998633210
Q ss_pred -C----------------CCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHH
Q 006010 186 -M----------------NILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDG 236 (664)
Q Consensus 186 -~----------------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (664)
. ....+...--.+..+|.+.|++++|+.+++.+... ..+...-..|.+.
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k--~Rt~kvnm~LakL 164 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR--QRTPKINMLLANL 164 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG--GCCHHHHHHHHHH
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch--hcCHHHHHHHHHH
Confidence 0 12233444445788899999999999999998765 3355554445444
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.47 E-value=4.2 Score=39.38 Aligned_cols=71 Identities=14% Similarity=0.044 Sum_probs=41.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHH
Q 006010 549 ILLNALCKQSNISHSIDLLNSMMDRGCDP-DLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVML 627 (664)
Q Consensus 549 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (664)
.++..+...|++++|+..+..+.. ..| +...+..++.+ |...|+..+|.+.|++..
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~a---------------------l~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITA---------------------YYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHH---------------------HHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH---------------------HHHcCCHHHHHHHHHHHH
Confidence 444555666677777766666665 233 34455555555 666777777766666654
Q ss_pred Hc-----CCCCChHHHHHHH
Q 006010 628 QK-----FLSPQTSTWERVV 642 (664)
Q Consensus 628 ~~-----~~~~~~~~~~~l~ 642 (664)
+. |+.|++.+-...-
T Consensus 233 ~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 233 TTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHH
Confidence 32 6666665544333
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.29 E-value=8.9 Score=43.39 Aligned_cols=144 Identities=10% Similarity=0.086 Sum_probs=73.3
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCC--------------
Q 006010 159 SVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCE-------------- 224 (664)
Q Consensus 159 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-------------- 224 (664)
.++..+...+.++-|.++...... +...--.+..++...|++++|.+.|++.... +.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~--------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~ 887 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS--------DPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQE 887 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC--------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC--------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhccccc
Confidence 355556666666666554433321 3333334555666677777777777654211 10
Q ss_pred ---------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010 225 ---------PDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTP----VTFNVLINGLCKNGELGRAAKLVDNMFLK 291 (664)
Q Consensus 225 ---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (664)
.-..-|..++..+.+.+.++.+.++-....+.....+. ..|..+.+.+...|++++|...+-.+...
T Consensus 888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 01223555566666666666666555544432111111 14555666666666666666666555444
Q ss_pred CCCCCHHHHHHHHHHHHhcCCh
Q 006010 292 GCLPNEVTYNTLIHGLCLKGNL 313 (664)
Q Consensus 292 g~~p~~~~~~~l~~~~~~~g~~ 313 (664)
.. -......++...|..|..
T Consensus 968 ~~--r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 968 PL--KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp SS--CHHHHHHHHHHHHHHCCH
T ss_pred HH--HHHHHHHHHHHHHhCCCh
Confidence 22 233445555555554443
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.70 E-value=1.4 Score=46.36 Aligned_cols=128 Identities=14% Similarity=0.099 Sum_probs=76.7
Q ss_pred HHHHHHHHhCCC-cchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhc------CCCCCCH----
Q 006010 87 YSLIQHYANSGD-FKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAH-LVEEAIRLFHTMVDE------FHCKRTV---- 154 (664)
Q Consensus 87 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~------~~~~~~~---- 154 (664)
..++..+...|+ .+.|..+++.+....+.........++......+ +--+|+++..+.++. .-.+.+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 345555555666 4678888888887664433322233333333322 233455555544321 0011111
Q ss_pred ------HHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHhhcc
Q 006010 155 ------KSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPN-TLTFNLVIKTVCRLGLVDNAIQLFREMP 219 (664)
Q Consensus 155 ------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 219 (664)
.....-+..+...|+++-|+++.++... ..|+ -.+|..|..+|...|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~-----~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE-----LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh-----cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1223334566678888888888888877 3454 4588888888888888888888888875
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.40 E-value=1.1 Score=43.39 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 006010 509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD-----RGCDPDLVTCN 583 (664)
Q Consensus 509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 583 (664)
+...++..+...|++++|...+..++..+|- +...|..++.++.+.|+..+|++.|++..+ .|+.|...+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~---~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPY---REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445666777888888888888887655544 677888888888888888888888887663 48888776543
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.21 E-value=3.6 Score=32.04 Aligned_cols=81 Identities=7% Similarity=0.066 Sum_probs=49.0
Q ss_pred CcCHHhHHHHHHHHHHcCC---HHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006010 504 KPDVVAYSSMIHGLCNAGS---VEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV 580 (664)
Q Consensus 504 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 580 (664)
.|+..+--.+..++.+..+ ..+++.++++..+..+ .-....+..+.-++.+.|++++|.+..+.+++ +.|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~--~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc--chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 4566666666666666654 3457777777753221 11233455566677777888888888877776 677665
Q ss_pred HHHHHHHh
Q 006010 581 TCNIFLTA 588 (664)
Q Consensus 581 ~~~~ll~~ 588 (664)
-...+-..
T Consensus 113 QA~~Lk~~ 120 (134)
T 3o48_A 113 QVGALKSM 120 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.40 E-value=8.1 Score=30.57 Aligned_cols=81 Identities=7% Similarity=0.066 Sum_probs=50.5
Q ss_pred CcCHHhHHHHHHHHHHcCC---HHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006010 504 KPDVVAYSSMIHGLCNAGS---VEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLV 580 (664)
Q Consensus 504 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 580 (664)
.|+..+--.+..++.+..+ ..+++.+++......+. -.......+.-++.+.|++++|.+..+.+++ +.|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~--~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS--THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--chhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 4566666666777776665 44677777777542221 1233344555677788888888888888887 677665
Q ss_pred HHHHHHHh
Q 006010 581 TCNIFLTA 588 (664)
Q Consensus 581 ~~~~ll~~ 588 (664)
-...+-..
T Consensus 112 QA~~Lk~~ 119 (144)
T 1y8m_A 112 QVGALKSM 119 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.23 E-value=7.9 Score=28.17 Aligned_cols=78 Identities=6% Similarity=0.003 Sum_probs=48.9
Q ss_pred CCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 006010 96 SGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALE 175 (664)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 175 (664)
+...++|..+-+.+...+. .+.+-...+..+...|+|++|..+.+.. +.||...|.++.. .+.|..+++..
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL-----AYPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 3456777777777766553 2223333344566778888888776655 5677777765544 56677777777
Q ss_pred HHHHHHh
Q 006010 176 FYNHIVN 182 (664)
Q Consensus 176 ~~~~~~~ 182 (664)
.+..+..
T Consensus 91 rL~~la~ 97 (116)
T 2p58_C 91 RLNRLAR 97 (116)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 7655544
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.41 E-value=27 Score=33.56 Aligned_cols=27 Identities=22% Similarity=-0.012 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006010 368 YIYSTLISGLFKEGKAEDAMKLWKQMM 394 (664)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 394 (664)
.....+...|.+.|+.++..+++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445566667777777777766666554
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.75 E-value=7.7 Score=28.18 Aligned_cols=78 Identities=9% Similarity=-0.015 Sum_probs=49.7
Q ss_pred CCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 006010 96 SGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALE 175 (664)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 175 (664)
+...++|..+-+.+...+. .+.+-...+..+...|+|++|..+.+.. +.||...|.++.. .+.|..+++..
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 3456777777777776553 2223333344566788888888776554 5677777765544 66777777777
Q ss_pred HHHHHHh
Q 006010 176 FYNHIVN 182 (664)
Q Consensus 176 ~~~~~~~ 182 (664)
.+..+..
T Consensus 90 rL~~la~ 96 (115)
T 2uwj_G 90 RLAGLGG 96 (115)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7766654
No 259
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.77 E-value=53 Score=35.61 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 006010 265 FNVLINGLCKNGELGRAAKLVDNMFL 290 (664)
Q Consensus 265 ~~~li~~~~~~g~~~~a~~~~~~~~~ 290 (664)
|..++....+.++.+.+.++|..+..
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677788888999999999999864
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.76 E-value=3.1 Score=37.10 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=25.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 006010 448 FESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDGKLREARMVWTQMLS 500 (664)
Q Consensus 448 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (664)
.+.|+++++++....-++.. |-|...-..++..+|-.|++++|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455555555554444443 34444444455555555555555555444443
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.35 E-value=29 Score=32.28 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH
Q 006010 261 TPVTFNVLINGLCKNGELGRAAKLV 285 (664)
Q Consensus 261 ~~~~~~~li~~~~~~g~~~~a~~~~ 285 (664)
|+.....+...|.+.+++.+|..-|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5556666777777777777776665
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.80 E-value=5.6 Score=39.14 Aligned_cols=60 Identities=8% Similarity=-0.046 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCcC--HHhHHHHHHHHHHcCCHHHHHHHHHHh
Q 006010 474 CYSVLIHGLCEDGKLREARMVWTQMLSRGCKPD--VVAYSSMIHGLCNAGSVEEALKLFNEM 533 (664)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (664)
+...+...|.+.|++++|.+.+.++......+. ...+...+..+...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344455555555666666666555554321111 234444555555555555555555554
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.30 E-value=8 Score=38.02 Aligned_cols=125 Identities=9% Similarity=-0.017 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHhCCC-Cc-CHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHH
Q 006010 488 LREARMVWTQMLSRGC-KP-DVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSID 565 (664)
Q Consensus 488 ~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 565 (664)
.++-.+......+... .. -..+...++..|.+.|++++|.+.|.++.....+...-...+-..++.+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 4444444444444321 12 124677888999999999999999999854333444445667778888888999999999
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 566 LLNSMMDR-GCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 566 ~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
.++++... .-.++.... .-+..| -|..+...++|.+|...|-.+...
T Consensus 190 ~~~ka~~~~~~~~d~~~~-~~lk~~----------------~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERR-NRYKTY----------------YGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHTTCCCTHHH-HHHHHH----------------HHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHH-HHHHHH----------------HHHHHHHhChHHHHHHHHHHHhcc
Confidence 99888742 112232222 222222 233477888999988888887664
No 264
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.63 E-value=13 Score=27.18 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010 245 EAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK 291 (664)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (664)
+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555555555666666666666666666666666666655443
No 265
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.27 E-value=14 Score=27.11 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006010 525 EALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMD 572 (664)
Q Consensus 525 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 572 (664)
+..+-++.+ ......|++....+.+++|.+.+++.-|+++++....
T Consensus 28 e~rrglN~l--~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTL--VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHH--TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444 3334455555555555555555555555555555543
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.21 E-value=53 Score=33.86 Aligned_cols=399 Identities=10% Similarity=0.026 Sum_probs=184.8
Q ss_pred HhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006010 203 CRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAA 282 (664)
Q Consensus 203 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 282 (664)
.+.|++..+..+...+...-+.| -..|..+...+ .....++....+++-.. .+.....-+..+..+.+.+++...+
T Consensus 17 ~~~~~~~~~~~l~~~l~~~pL~~-yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~~~~w~~~l 92 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKDYPLYP-YLEYRQITDDL-MNQPAVTVTNFVRANPT--LPPARTLQSRFVNELARREDWRGLL 92 (618)
T ss_dssp HHTTCHHHHHHHSGGGTTSTTHH-HHHHHHHHHTG-GGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHhhcCCCcHH-HHHHHHHHhCc-ccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHhCCCHHHHH
Confidence 35688888877777664332111 11233222211 12234444444433221 1112233345566677788887777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006010 283 KLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDRMVASKCMPNEVTYGTIINGLVKLGRAVDGARVLMSMEERK 362 (664)
Q Consensus 283 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 362 (664)
..+.. .+.+...-.....+....|+..+|....+.+...| ...+..+..++..+.+.|......
T Consensus 93 ~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~---------- 156 (618)
T 1qsa_A 93 AFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLA---------- 156 (618)
T ss_dssp HHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHH----------
T ss_pred HhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHH----------
Confidence 64442 23355555556667777888888888888877765 345566777777777666543321
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---
Q 006010 363 FHVNEYIYSTLISGLFKEGKAEDAMKLWKQMMEKGCKPNTVV-YSALIDGLCRVGKPDEAEEILFEMINNGCAANAF--- 438 (664)
Q Consensus 363 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 438 (664)
.+.- +......|+...|..+...+ .++... ...++.... ++..+...... . .++..
T Consensus 157 ------~~~R-~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~---~p~~~~~~~~~---~--~~~~~~~~ 216 (618)
T 1qsa_A 157 ------YLER-IRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLAN---NPNTVLTFART---T--GATDFTRQ 216 (618)
T ss_dssp ------HHHH-HHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHH---CGGGHHHHHHH---S--CCCHHHHH
T ss_pred ------HHHH-HHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHh---ChHhHHHHHhc---c--CCChhhHH
Confidence 1111 12223344444444433322 112111 111111111 12222221111 0 11111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHH
Q 006010 439 TYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCY----SVLIHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMI 514 (664)
Q Consensus 439 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 514 (664)
.+...+.-+.+ .+.+.|...+....+.. ..+.... ..++..+...+...++...+...... .++.......+
T Consensus 217 ~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~ 292 (618)
T 1qsa_A 217 MAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRV 292 (618)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHH
T ss_pred HHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHH
Confidence 11111222222 25566666666654432 1222222 22222233334244455555554432 22332233333
Q ss_pred HHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhcc
Q 006010 515 HGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLE 594 (664)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 594 (664)
....+.|+++.|...|+.+ .... .....-...+.+++...|+.++|..+|+++.. .. +|..++.+-.-..+
T Consensus 293 r~Alr~~d~~~a~~~~~~l--~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~---~~---~fYg~lAa~~Lg~~ 363 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARL--PMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QR---GFYPMVAAQRIGEE 363 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHS--CTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SC---SHHHHHHHHHTTCC
T ss_pred HHHHHCCCHHHHHHHHHHc--cccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---ChHHHHHHHHcCCC
Confidence 3344567777777777766 2211 11222233455666677777777777777763 11 22223322111110
Q ss_pred C------C-CCchhhh-----HHHHHHhhhcCCcchHHHHHHHHHHcCCCCChHHHHHHHHHhcccchHHHHHHH
Q 006010 595 A------P-QDGTDFL-----NELAIRLFKRQRTSGGFKIVEVMLQKFLSPQTSTWERVVQELCRPKRIQAAINK 657 (664)
Q Consensus 595 ~------~-~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 657 (664)
. + ......+ -.-+..+...|....|...+..+.+. .++.-...+.......|..+.++..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~ 435 (618)
T 1qsa_A 364 YELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQA 435 (618)
T ss_dssp CCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHH
Confidence 0 0 0001111 12234577889999999888888753 2444445556666667777766543
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.35 E-value=15 Score=28.50 Aligned_cols=47 Identities=9% Similarity=0.135 Sum_probs=28.9
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHh
Q 006010 487 KLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEM 533 (664)
Q Consensus 487 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (664)
|.-+..+-++.+....+.|++.+....+.+|.+.+++.-|+++|+-+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~v 114 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 114 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33445555555555566666666666666666666666666666655
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.57 E-value=22 Score=27.65 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006010 245 EAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLVDNMFLK 291 (664)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (664)
+..+-++.+...++.|++.+..+.+++|-+.+|+.-|.++|+-.+.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44555555555666677777777777777777777777777766544
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.40 E-value=39 Score=30.16 Aligned_cols=119 Identities=11% Similarity=0.087 Sum_probs=68.1
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcC
Q 006010 127 AYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLG 206 (664)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 206 (664)
...+.|++++|+.....-++. .|.|...-..+++.++-.|++++|.+-++.+.+..+. ..|....|..+|.+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~-~~~~a~~yr~lI~aE---- 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAA---- 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHHHHHH----
Confidence 456778888888887777665 5667777788888888888888888888888762211 112223444444332
Q ss_pred ChhHHH-HHHhhcccCCCC-CCHHHHHHHHHHHH--hcCChhHHHHHHHHHHh
Q 006010 207 LVDNAI-QLFREMPVRNCE-PDIYTYCTLMDGLC--KENRLDEAVLLLDEMQV 255 (664)
Q Consensus 207 ~~~~A~-~~~~~~~~~~~~-~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 255 (664)
..+ ++|.--..-++. ....-...++.+.. ..|+.++|..+-+++.+
T Consensus 79 ---~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 79 ---QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ---HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 111 233221111111 11222333444333 36888888877777654
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.09 E-value=35 Score=28.88 Aligned_cols=57 Identities=16% Similarity=0.080 Sum_probs=39.7
Q ss_pred cCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 006010 240 ENRLDEAVLLLDEMQVDGCFP-TPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPN 296 (664)
Q Consensus 240 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~ 296 (664)
.+...++.++|..|...|+-. -...|......+...|++.+|.++|+.-++.+..|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344567778888777766543 345667777777778888888888888777766653
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.01 E-value=18 Score=30.67 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=29.4
Q ss_pred HhHHHHHHHHHHhcccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCC
Q 006010 170 YHRALEFYNHIVNAKHMNILPN-TLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEP 225 (664)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 225 (664)
..++.++|..|.. .++.-. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~---~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFN---KGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHH---HTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHH---CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4566666666655 233222 3345555555556666666666666666555444
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=65.62 E-value=37 Score=24.78 Aligned_cols=86 Identities=21% Similarity=0.114 Sum_probs=52.5
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHH
Q 006010 486 GKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSID 565 (664)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 565 (664)
...++|..+-+-+...+. ...+-..-+..+.+.|+|++|..+.+.. ..||...|-++-. .+.|--+++..
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~------c~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN------PWPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC------CCGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC------CCchHHHHHHHHH--HhcccHHHHHH
Confidence 356677766666665432 2222223344567788888888876554 4677777765543 47787788887
Q ss_pred HHHHHHHCCCCCCHHHH
Q 006010 566 LLNSMMDRGCDPDLVTC 582 (664)
Q Consensus 566 ~~~~~~~~~~~p~~~~~ 582 (664)
.+.++...| .|....|
T Consensus 90 rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 90 RLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHTCS-SHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 777776543 3433333
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=64.70 E-value=38 Score=24.71 Aligned_cols=79 Identities=19% Similarity=0.130 Sum_probs=48.5
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCChhHHHH
Q 006010 486 GKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSNISHSID 565 (664)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 565 (664)
...++|..+-+-+...+. ...+-..-+..+.+.|+|++|..+.+.. ..||...|-++-. .+.|--+++..
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~------c~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL------AYPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS------CCGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC------CCchHHHHHHHHH--HhcccHHHHHH
Confidence 356667666666655432 2222223344567788888888877654 4677777765543 46777777777
Q ss_pred HHHHHHHCC
Q 006010 566 LLNSMMDRG 574 (664)
Q Consensus 566 ~~~~~~~~~ 574 (664)
.+.++...|
T Consensus 91 rL~~la~sg 99 (116)
T 2p58_C 91 RLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhCC
Confidence 776776543
No 274
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=56.89 E-value=1.3e+02 Score=28.31 Aligned_cols=63 Identities=17% Similarity=0.333 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCC
Q 006010 336 GTIINGLVKLGRAVDGARVLMSMEERKFHVNEYIYSTLISGLFKEGK--AEDAMKLWKQMMEKGCK 399 (664)
Q Consensus 336 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 399 (664)
..++.-|...++.++|.+.++++....+. ...+...+..++-+.++ .+....++..+...|+-
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 44555666666666666666666432111 12223333333333222 33455555555555443
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.85 E-value=75 Score=25.49 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 006010 244 DEAVLLLDEMQVDGCFP-TPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPN 296 (664)
Q Consensus 244 ~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~ 296 (664)
+++.++|..|...|+-. -...|......+...|++.+|.++|+.-++.+..|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 33667777776666433 344566666666777777777777777766655553
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.24 E-value=28 Score=28.40 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcccCCCCC
Q 006010 195 FNLVIKTVCRLGLVDNAIQLFREMPVRNCEP 225 (664)
Q Consensus 195 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 225 (664)
|......+-..|++.+|.++|+.-++.+-.|
T Consensus 99 Y~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 99 YISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3333444444444444444444444443333
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=50.62 E-value=96 Score=24.87 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHhhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHcCCCCC
Q 006010 561 SHSIDLLNSMMDRGCDPDLVTCNIFLTALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQKFLSPQ 634 (664)
Q Consensus 561 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 634 (664)
+++.++|..|...|+.-....+-.-...+ +...|++++|.++++..++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~--------------------lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGH--------------------LEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHH--------------------HHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHH--------------------HHHcCCHHHHHHHHHHHHHcCCccH
Confidence 44777777777776665544433333332 6777888888888888777655553
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=50.14 E-value=1e+02 Score=25.08 Aligned_cols=53 Identities=9% Similarity=0.053 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 006010 245 EAVLLLDEMQVDGCFP-TPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPNE 297 (664)
Q Consensus 245 ~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 297 (664)
+..++|..|...|+-. -...|......+...|++.+|.++|+.-+..+..|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 3566677776666443 3445666666667777777777777777766655543
No 279
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.48 E-value=1.2e+02 Score=26.06 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 006010 244 DEAVLLLDEMQVDGCFP-TPVTFNVLINGLCKNGELGRAAKLVDNMFLKGCLPN 296 (664)
Q Consensus 244 ~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~ 296 (664)
++..++|..|...|+-. -...|......+...|++.+|.++|+.-+..+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 45667777777766543 345566667777777777777777777777665553
No 280
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=45.40 E-value=2.7e+02 Score=28.62 Aligned_cols=52 Identities=10% Similarity=0.001 Sum_probs=31.4
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHh
Q 006010 479 IHGLCEDGKLREARMVWTQMLSRGCKPDVVAYSSMIHGLCNAGSVEEALKLFNEM 533 (664)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 533 (664)
+..+...|....|...|..+... . +......+.......|..+.++......
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 34566778888888877777653 2 2233334445555677777776655443
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=45.09 E-value=1.4e+02 Score=25.15 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=8.2
Q ss_pred ChhHHHHHHHHHHhCCC
Q 006010 82 GDSTFYSLIQHYANSGD 98 (664)
Q Consensus 82 ~~~~~~~l~~~~~~~~~ 98 (664)
++..-...+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 44444444555555554
No 282
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=44.50 E-value=1.1e+02 Score=24.53 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHh
Q 006010 510 YSSMIHGLCNAGSVEEALKLFNEM 533 (664)
Q Consensus 510 ~~~l~~~~~~~g~~~~A~~~~~~~ 533 (664)
...++.-|...|+.++|.+.++++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 344555666666666666666665
No 283
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=44.33 E-value=1.5e+02 Score=27.26 Aligned_cols=66 Identities=17% Similarity=0.256 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCC
Q 006010 510 YSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN--ISHSIDLLNSMMDRGCDPD 578 (664)
Q Consensus 510 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~ 578 (664)
...++.-|...|+.++|.+.++++ ..|... .......+..++-+.++ .+....++..+.+.|+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL--~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKEL--EVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH--CCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--CCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 456777888889999999999998 222111 12223333344443322 3456778888876655443
No 284
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.65 E-value=2.4e+02 Score=28.17 Aligned_cols=66 Identities=11% Similarity=0.037 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCC-cCHHHHH-HHHHHHHhcCChhHHHHHHhhccc
Q 006010 154 VKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNIL-PNTLTFN-LVIKTVCRLGLVDNAIQLFREMPV 220 (664)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~-~ll~~~~~~g~~~~A~~~~~~~~~ 220 (664)
...+|.+++.|...+.++.|..+..+..-.. .... .....|. .+...+.-.+++.+|.+.+....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~-~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPH-TDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCT-TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCc-ccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455666666666666666666666553100 0010 1112332 244455556666666666555443
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=41.80 E-value=2.3e+02 Score=26.69 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCCH
Q 006010 509 AYSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN--ISHSIDLLNSMMDRGCDPDL 579 (664)
Q Consensus 509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~ 579 (664)
....++.-|...|+.++|.+.++++ ..+... .......+..++-+.++ .+...+++..+...|+-+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL--~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKEL--EVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH--CCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHc--cCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 3567788888999999999999998 322211 12334444455544333 35577888888876655443
No 286
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=41.71 E-value=3.2e+02 Score=28.36 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=15.5
Q ss_pred hhhcCCcchHHHHHHHHH
Q 006010 610 LFKRQRTSGGFKIVEVML 627 (664)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~ 627 (664)
++..|+|+.|.+.++++.
T Consensus 548 ~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHHTTCHHHHHHHHHHTS
T ss_pred HHHcCCHHHHHHHHHhCC
Confidence 688999999999888863
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=40.76 E-value=89 Score=27.79 Aligned_cols=16 Identities=25% Similarity=0.133 Sum_probs=7.3
Q ss_pred HHHhcCChhHHHHHHh
Q 006010 201 TVCRLGLVDNAIQLFR 216 (664)
Q Consensus 201 ~~~~~g~~~~A~~~~~ 216 (664)
..++.|+.+....+++
T Consensus 11 ~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 11 KAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3444455544444443
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.25 E-value=1.7e+02 Score=25.49 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=15.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 006010 331 NEVTYGTIINGLVKLGRAVDGARVLMSM 358 (664)
Q Consensus 331 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 358 (664)
+.......+..+.+.|+.++|..+|-+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3444445555566666666666665444
No 289
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.27 E-value=2.3e+02 Score=31.21 Aligned_cols=132 Identities=8% Similarity=0.017 Sum_probs=75.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH
Q 006010 123 FIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTV 202 (664)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 202 (664)
.++..+...|.++-|.++... ++.++..--.++.+|...|++++|..+|+++-. |+..+......
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~----gl~~~~~~~~~----- 879 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL----VLYSHTSQFAV----- 879 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC----TTCSSCCSCGG-----
T ss_pred HHHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh----hcccCcccccc-----
Confidence 355666777777776665433 344555556778888888999999988887642 23221111000
Q ss_pred HhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcC
Q 006010 203 CRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTP----VTFNVLINGLCKNG 276 (664)
Q Consensus 203 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g 276 (664)
......++...... .....-|..++..+-+.+-++.+.++-+...+.--.-|. ..|+.+.++.+..|
T Consensus 880 -----~~~~~~ll~~~e~~--~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 -----LREFQEIAEKYHHQ--NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -----GHHHHHHHHHTTTC--SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -----hhhhhhccCccccc--chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00111122211111 112336788888888899998888888777654222232 35677777766544
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.25 E-value=1.4e+02 Score=23.01 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=32.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhcCCCCCCCHhHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCC
Q 006010 510 YSSMIHGLCNAGSVEEALKLFNEMLCLEPKSQPDVFTYNILLNALCKQSN--ISHSIDLLNSMMDRGCD 576 (664)
Q Consensus 510 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~ 576 (664)
...++.-|...|+.++|.+.++++ ..+.. ........+..++-+.++ .+.+..++..+.+.|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL--~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKEL--EVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH--TCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--CCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 345666677777777777777776 21111 111222333334433322 34566666666655543
No 291
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=37.25 E-value=1.9e+02 Score=24.40 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHhc---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010 408 LIDGLCRV---GKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGK-----GHKAVEIWKDMAKNNCVYNEVCYSVLI 479 (664)
Q Consensus 408 li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~ 479 (664)
+|+++.++ .+++.|+-++.+|++.| .|....-..++.+....|. ...|...++.....|.|.-.......+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 95 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVV 95 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHcCCChHHHHHHHHHHHh
Q 006010 480 HGLCEDGKLREARMVWTQMLS 500 (664)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~ 500 (664)
..++..-+...+...++..++
T Consensus 96 iyLA~aPKSNs~y~A~~~A~~ 116 (204)
T 2r9g_A 96 VDLCLSPKSNSAYMALDAALA 116 (204)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 292
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=37.20 E-value=1.9e+02 Score=24.35 Aligned_cols=34 Identities=18% Similarity=0.074 Sum_probs=17.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006010 414 RVGKPDEAEEILFEMINNGCAANAFTYSSLMKGF 447 (664)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 447 (664)
+-.+++.|+-++.+|++.|..|....-..++.+.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3456666666666666665444333333333333
No 293
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.16 E-value=34 Score=29.48 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=22.6
Q ss_pred HHHHHHhhcccCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 006010 210 NAIQLFREMPVRNCEPD-IYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFP 260 (664)
Q Consensus 210 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 260 (664)
.+..+|..|...|+-.. ...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34444444444433222 2334444444445555555555555544443333
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.93 E-value=3.6e+02 Score=26.93 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHhhcccCC-CCCCHH--HH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----
Q 006010 191 NTLTFNLVIKTVCRLGLVDNAIQLFREMPVRN-CEPDIY--TY-CTLMDGLCKENRLDEAVLLLDEMQVDGCFPTP---- 262 (664)
Q Consensus 191 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~--~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---- 262 (664)
....+|.+++.|...+.++.|..+.....--. -.++.. .| -.+...+.-.+++.+|.+.+......- +++.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~~~~a~g 308 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PHNSKSLG 308 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SCSSSCSH
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-Ccchhhhh
Confidence 35578999999999999999999999874221 122322 23 335677888999999999999877542 2221
Q ss_pred ---HH--HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006010 263 ---VT--FNVLINGLCKNGELGRAAKLVDNMFLKGCLPNEVTYNTLIHGLCLKGNLDKAVSLLDR 322 (664)
Q Consensus 263 ---~~--~~~li~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 322 (664)
.. |..++..+ .|++.. ..+|. ..+.......|..+..++ +.|++..-...++.
T Consensus 309 fr~~a~K~lI~V~LL--lG~iP~-r~lf~---q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 309 FLQQSNKLHCCIQLL--MGDIPE-LSFFH---QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp HHHHHHHHHHHHHHH--HTCCCC-HHHHT---TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHhh--cCCCCC-hHHhh---chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 12 22223333 466543 22222 111111234577777775 66887765555543
No 295
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.61 E-value=2.5e+02 Score=24.47 Aligned_cols=28 Identities=14% Similarity=0.386 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006010 401 NTVVYSALIDGLCRVGKPDEAEEILFEM 428 (664)
Q Consensus 401 ~~~~~~~li~~~~~~~~~~~a~~~~~~~ 428 (664)
+.......+..+.+.|+.++|.++|=+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3344444445555555555555555443
No 296
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.38 E-value=2.9e+02 Score=30.31 Aligned_cols=132 Identities=10% Similarity=0.021 Sum_probs=70.4
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHc
Q 006010 88 SLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQE 167 (664)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (664)
.++..|...|.++-+..+...+ +.++..-..++++|...|++++|...|++.. .+...+.....
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA--~gl~~~~~~~~--------- 878 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFA--------- 878 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CTTCSSCCSCG---------
T ss_pred HHHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh--hhcccCccccc---------
Confidence 3667777778777665433222 2244445678999999999999999999873 22211110000
Q ss_pred CCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCH----HHHHHHHHHHHhcC
Q 006010 168 GLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDI----YTYCTLMDGLCKEN 241 (664)
Q Consensus 168 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 241 (664)
..+....++..... ......-|..++..+-+.+.++.+.++-+..++.--..|. ..|..+.++.+..|
T Consensus 879 -~~~~~~~ll~~~e~-----~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 879 -VLREFQEIAEKYHH-----QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -GGHHHHHHHHHTTT-----CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -chhhhhhccCcccc-----cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00011111111100 0112235667777777777777777666655443212222 24666666666544
No 297
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=31.96 E-value=2.4e+02 Score=24.01 Aligned_cols=92 Identities=13% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHhc---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006010 408 LIDGLCRV---GKPDEAEEILFEMINNGCAANAFTYSSLMKGFFESGK-----GHKAVEIWKDMAKNNCVYNEVCYSVLI 479 (664)
Q Consensus 408 li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~ 479 (664)
+|+++.++ .+++.|+-++.+|++.|..|....-..++.+....|. ...|...++.....|.|.-.......+
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 117 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQAS 117 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHcCCChHHHHHHHHHHHh
Q 006010 480 HGLCEDGKLREARMVWTQMLS 500 (664)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~ 500 (664)
..++..-+...+ ..+..+++
T Consensus 118 iyLA~APKSNs~-~A~~~A~~ 137 (213)
T 3ctd_A 118 LYLAISPKSNST-KSIFKAME 137 (213)
T ss_dssp HHHHHSCCCCGG-GHHHHHHH
T ss_pred HHHHcCCccHHH-HHHHHHHH
No 298
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=30.60 E-value=2.3e+02 Score=23.44 Aligned_cols=175 Identities=11% Similarity=-0.030 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHH
Q 006010 80 QLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNS 159 (664)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 159 (664)
.+++..-...+..+...+.......+...+. ..+.......+.++...|..+..-.+...+ ..++...-..
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~----~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l-----~d~~~~vr~~ 95 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALK----DEDAWVRRAAADALGQIGDERAVEPLIKAL-----KDEDGWVRQS 95 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHT-----TCSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHHHHHHHHHH-----cCCCHHHHHH
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHh
Q 006010 160 VLNVIIQEGLYHRALEFYNHIVNAKHMNILPNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCK 239 (664)
Q Consensus 160 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (664)
.+.++.+.++.+....+.+.+.. ++..+-...+.++.+.|+.+....+...+. .++...-...+.++.+
T Consensus 96 a~~aL~~~~~~~~~~~L~~~l~d-------~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~----d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 96 AAVALGQIGDERAVEPLIKALKD-------EDWFVRIAAAFALGEIGDERAVEPLIKALK----DEDGWVRQSAADALGE 164 (201)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTC-------SSHHHHHHHHHHHHHHTCGGGHHHHHHHTT----CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHH
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 006010 240 ENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGEL 278 (664)
Q Consensus 240 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 278 (664)
.|..+....+.+.+.. ++..+-...+.++.+.+..
T Consensus 165 ~~~~~~~~~L~~~l~d----~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 165 IGGERVRAAMEKLAET----GTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HCSHHHHHHHHHHHHH----CCHHHHHHHHHHHHHCC--
T ss_pred hCchhHHHHHHHHHhC----CCHHHHHHHHHHHHHHHhh
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.56 E-value=1.7e+02 Score=23.39 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=10.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 006010 301 NTLIHGLCLKGNLDKAVSLLDRM 323 (664)
Q Consensus 301 ~~l~~~~~~~g~~~~a~~~~~~~ 323 (664)
..++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 33444444444444444444444
No 300
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=29.44 E-value=4.1e+02 Score=25.93 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=13.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCC
Q 006010 415 VGKPDEAEEILFEMINNGCAAN 436 (664)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~~~~~ 436 (664)
.++.+.|..++.+|++.|..|.
T Consensus 268 gsd~daAl~~la~ml~~Gedp~ 289 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPL 289 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 4566666666666666654433
No 301
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.10 E-value=1.6e+02 Score=25.09 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=7.3
Q ss_pred HHhcCChhHHHHHHh
Q 006010 202 VCRLGLVDNAIQLFR 216 (664)
Q Consensus 202 ~~~~g~~~~A~~~~~ 216 (664)
.++.|+.+....+++
T Consensus 16 A~~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 16 ATQYGIYERCRELVE 30 (240)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCChHHHHHHHH
Confidence 344555555444444
No 302
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=28.46 E-value=99 Score=26.54 Aligned_cols=21 Identities=5% Similarity=-0.081 Sum_probs=11.9
Q ss_pred HHHHHHhcCChhHHHHHHhhc
Q 006010 198 VIKTVCRLGLVDNAIQLFREM 218 (664)
Q Consensus 198 ll~~~~~~g~~~~A~~~~~~~ 218 (664)
.+...++.|+.+-+.-+++.-
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHcC
Confidence 344556667766655555543
No 303
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.37 E-value=1.3e+02 Score=23.28 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 006010 87 YSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLV 134 (664)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 134 (664)
..++..+...+.+-.|.++++.+.+.++..+..+....+..+...|-.
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 346667777777889999999998887777777777777777776643
No 304
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.23 E-value=1.1e+02 Score=24.30 Aligned_cols=55 Identities=9% Similarity=0.070 Sum_probs=34.7
Q ss_pred CCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006010 77 GSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHL 133 (664)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (664)
.+.++++. -..++..+...+ +-.|.++++.+.+.++..+..+.+..+..+...|-
T Consensus 13 ~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 13 RGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp TTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred cCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34445543 334455555556 67788888888877766666666666666666553
No 305
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.04 E-value=2.3e+02 Score=22.52 Aligned_cols=32 Identities=6% Similarity=-0.010 Sum_probs=12.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006010 382 KAEDAMKLWKQMMEKGCKPNTVVYSALIDGLC 413 (664)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 413 (664)
..-.|.++++.+.+.+...+..|....+..+.
T Consensus 41 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 72 (150)
T 2xig_A 41 THLSPEEITHSIRQKDKNTSISSVYRILNFLE 72 (150)
T ss_dssp SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 33344444444443333333333333333333
No 306
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=27.58 E-value=49 Score=29.25 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=11.7
Q ss_pred HHHhcCChhHHHHHHHHHHhCCC
Q 006010 236 GLCKENRLDEAVLLLDEMQVDGC 258 (664)
Q Consensus 236 ~~~~~g~~~~a~~~~~~~~~~~~ 258 (664)
..++.|+.+....+++.+.+.|.
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~ 33 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKK 33 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCC
Confidence 34455555555555555444443
No 307
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.53 E-value=2.1e+02 Score=22.01 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=10.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 006010 302 TLIHGLCLKGNLDKAVSLLDRM 323 (664)
Q Consensus 302 ~l~~~~~~~g~~~~a~~~~~~~ 323 (664)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444444444444444444
No 308
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=27.44 E-value=2e+02 Score=25.79 Aligned_cols=18 Identities=11% Similarity=-0.123 Sum_probs=9.4
Q ss_pred HHHHhcCChhHHHHHHhh
Q 006010 200 KTVCRLGLVDNAIQLFRE 217 (664)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~ 217 (664)
...+..|+.+-+..+++.
T Consensus 36 ~~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 36 YYAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhC
Confidence 334455666555555544
No 309
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=26.86 E-value=2.6e+02 Score=23.00 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcC-ChhHHHHHHHHHH
Q 006010 547 YNILLNALCKQS-NISHSIDLLNSMM 571 (664)
Q Consensus 547 ~~~l~~~~~~~g-~~~~A~~~~~~~~ 571 (664)
...++..+.+.| .++.+..+++.+.
T Consensus 139 ~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 139 QNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 444555555555 4455555555554
No 310
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.69 E-value=81 Score=25.64 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=36.0
Q ss_pred HHHhhCCCCCCCCCChhHHHHHHHHHHhCCCcchHHHHHHHHHhC--CCCcCHHHHHHHHHHHHhcCC
Q 006010 68 EIFNSTPKLGSYQLGDSTFYSLIQHYANSGDFKSLEMVLYRMRRE--KRVVLEKSFIFIFKAYGKAHL 133 (664)
Q Consensus 68 ~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 133 (664)
.-+....+..+.+.++. -..++..+...+.+-.|.++++.+.+. ++..+..+.+..+..+...|-
T Consensus 18 ~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 18 ERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 33333333344444443 344556666666667777777777665 555555555555555555553
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.67 E-value=2.3e+02 Score=22.27 Aligned_cols=9 Identities=22% Similarity=0.394 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 006010 386 AMKLWKQMM 394 (664)
Q Consensus 386 a~~~~~~~~ 394 (664)
|.++++.+.
T Consensus 40 a~ei~~~l~ 48 (145)
T 2fe3_A 40 ADDIYKALE 48 (145)
T ss_dssp HHHHHHHHG
T ss_pred HHHHHHHHH
Confidence 333333333
No 312
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=25.39 E-value=1.6e+02 Score=25.94 Aligned_cols=15 Identities=7% Similarity=0.098 Sum_probs=8.4
Q ss_pred HHHcCCHHHHHHHHH
Q 006010 517 LCNAGSVEEALKLFN 531 (664)
Q Consensus 517 ~~~~g~~~~A~~~~~ 531 (664)
.+..|+.+-+..+++
T Consensus 226 A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 226 AVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 345566665555554
No 313
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.16 E-value=1.3e+02 Score=23.66 Aligned_cols=48 Identities=10% Similarity=0.085 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 006010 87 YSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLV 134 (664)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 134 (664)
..++..+...+.+-.|.++++.+.+.++..+..+.+..+..+...|-.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 446667777777888999999988887777777777777777776644
No 314
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.00 E-value=2.7e+02 Score=22.48 Aligned_cols=59 Identities=14% Similarity=0.029 Sum_probs=41.8
Q ss_pred HHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH-hhhhhccCCCCchhhhHHHHHHhhhcCCcchHHHHHHHHHHc
Q 006010 555 CKQSNISHSIDLLNSMMDRGCDP--DLVTCNIFLT-ALKEKLEAPQDGTDFLNELAIRLFKRQRTSGGFKIVEVMLQK 629 (664)
Q Consensus 555 ~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~ll~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (664)
...|++=+|-++++..=...-.+ ....+..+++ . ..+....+.|++..|..++++...+
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~l----------------AvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVA----------------AGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHH----------------HHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----------------HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44588888888888887643444 4445666666 3 2333367789999999999999875
No 315
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.95 E-value=1.8e+02 Score=27.17 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHH
Q 006010 475 YSVLIHGLCEDGKLREARMVWTQML 499 (664)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (664)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3456666666777777777666654
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.78 E-value=4.6e+02 Score=25.69 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=37.2
Q ss_pred CChhHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006010 206 GLVDNAIQLFREMPVRNCEPDIYTYCTLMDGLCKENRLDEAVLLLDEMQVDGCFPTPVTFNVLINGLCKNGELGRAAKLV 285 (664)
Q Consensus 206 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 285 (664)
.+.+-|.++-.+ .|++--...|..-.+.+...|++++|.++--.... |+-.+..|.+.+-..=...|+..-.+..|
T Consensus 343 ~n~~lA~~lA~R---~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMAVR---NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHHHH---TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHHHh---cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 445544444432 23222334455555555666666666555444332 33345555444333333334444444444
Q ss_pred HHHHHc
Q 006010 286 DNMFLK 291 (664)
Q Consensus 286 ~~~~~~ 291 (664)
.-+.+.
T Consensus 419 ~~Ll~~ 424 (494)
T 1bpo_A 419 GILLDQ 424 (494)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 444444
No 317
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.28 E-value=4e+02 Score=26.10 Aligned_cols=30 Identities=20% Similarity=0.038 Sum_probs=13.6
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006010 114 RVVLEKSFIFIFKAYGKAHLVEEAIRLFHT 143 (664)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 143 (664)
.+.....|..-+..+...|++++|.++-..
T Consensus 357 LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~ 386 (494)
T 1bpo_A 357 LAGAEELFARKFNALFAQGNYSEAAKVAAN 386 (494)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 333444444444444444555554444433
No 318
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=24.22 E-value=3e+02 Score=22.59 Aligned_cols=129 Identities=13% Similarity=0.006 Sum_probs=67.2
Q ss_pred HHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHh
Q 006010 92 HYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYH 171 (664)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 171 (664)
-+.+-.+++.+.-+-.-+....++ .-..+.-.+.-.|.+..++-++... .+..+.-.-.-+|-+..++.
T Consensus 11 Ks~kY~dYdt~~fLsa~L~~~~~e----Y~lL~~I~LyyngEY~R~Lf~L~~l-------NT~Ts~YYk~LCy~klKdYk 79 (242)
T 3kae_A 11 KSIRYRDYETAIFLAACLLPCKPE----YRMLMSIVLYLNGEYTRALFHLHKL-------NTCTSKYYESLCYKKKKDYK 79 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHC----C----THHHHHHHHHHTTCHHHHHHHHHTC-------CBHHHHHHHHHHHHHTTCHH
T ss_pred HHhhcccccHHHHHHHHHccCChH----HHhhhhhhhhhcchHhHHHHHHHhc-------chHHHHHHHHHHHHHHHHHH
Confidence 345556666655444333332221 1112222345678888887776543 22222222334666778888
Q ss_pred HHHHHHHHHHhcccCCCC--cCHHHHHHHHHHHHhcCChhHHHHHHhhcccCCCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 006010 172 RALEFYNHIVNAKHMNIL--PNTLTFNLVIKTVCRLGLVDNAIQLFREMPVRNCEPD-IYTYCTLMDGLCKENRLDEAVL 248 (664)
Q Consensus 172 ~A~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 248 (664)
.|...++.++. ..+. ||+.. -++.|.-. +.| ...|+.+...+...|+.++|+.
T Consensus 80 kA~~~le~il~---~kvd~d~~~d~-------------------~~~~ffvd--~~DkEfFy~l~a~lltq~g~r~EaI~ 135 (242)
T 3kae_A 80 KAIKSLESILE---GKVERDPDVDA-------------------RIQEMFVD--PGDEEFFESLLGDLCTLSGYREEGIG 135 (242)
T ss_dssp HHHHHHHHHHT---TCSBCCCCCCH-------------------HHHTTSCC--TTCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHh---cccccCccccc-------------------ccceeeec--cchHHHHHHHHHHHHHHhcCHHHhhh
Confidence 88888888886 2232 33211 11122211 223 3445666667777888888888
Q ss_pred HHHHHHh
Q 006010 249 LLDEMQV 255 (664)
Q Consensus 249 ~~~~~~~ 255 (664)
.+..--.
T Consensus 136 y~~~Sf~ 142 (242)
T 3kae_A 136 HYVRSFG 142 (242)
T ss_dssp HHHHHHH
T ss_pred HhhhhcC
Confidence 7765443
No 319
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.12 E-value=3.1e+02 Score=22.48 Aligned_cols=29 Identities=7% Similarity=-0.010 Sum_probs=15.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 006010 233 LMDGLCKENRLDEAVLLLDEMQVDGCFPT 261 (664)
Q Consensus 233 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 261 (664)
.+...+..|+.+.-.++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 34444555555544555555666655444
No 320
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.10 E-value=73 Score=22.75 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=9.4
Q ss_pred HHHHHhcccchHHHHHHHH
Q 006010 640 RVVQELCRPKRIQAAINKC 658 (664)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~ 658 (664)
...+.+.+.|++++|++..
T Consensus 20 RrAe~ll~~gkydeAIech 38 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCH 38 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHH
Confidence 3444555555555555433
No 321
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.94 E-value=4.5e+02 Score=24.20 Aligned_cols=51 Identities=12% Similarity=-0.036 Sum_probs=33.2
Q ss_pred ChhHHHHHHhhcccCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006010 207 LVDNAIQLFREMPVRNCEPDI--YTYCTLMDGLCKENRLDEAVLLLDEMQVDG 257 (664)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 257 (664)
+..+..++-..+..-++.|.. -+...-|....|.+++..|..+-+++.+.+
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 445556666556555555432 245566777778888888888888887764
No 322
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.90 E-value=1.7e+02 Score=22.69 Aligned_cols=55 Identities=15% Similarity=0.072 Sum_probs=35.5
Q ss_pred CCCChhHHHHHHHHHHhCC-CcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 006010 79 YQLGDSTFYSLIQHYANSG-DFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHLV 134 (664)
Q Consensus 79 ~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 134 (664)
.+.++. -..++..+...+ .+-.|.++++.+.+.++..+..+.+..+..+.+.|-.
T Consensus 14 ~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 14 LKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp CCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 344433 344566666666 6778888888888877766776766666666665543
No 323
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=22.67 E-value=1.5e+02 Score=25.34 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=10.4
Q ss_pred HHHhcCChhHHHHHHHHHHhCC
Q 006010 236 GLCKENRLDEAVLLLDEMQVDG 257 (664)
Q Consensus 236 ~~~~~g~~~~a~~~~~~~~~~~ 257 (664)
..+..|+.+.+..+++.+.+.|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 3444555555555554444433
No 324
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.33 E-value=2.3e+02 Score=21.98 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHHC
Q 006010 419 DEAEEILFEMINN 431 (664)
Q Consensus 419 ~~a~~~~~~~~~~ 431 (664)
-.|.++++.+.+.
T Consensus 35 ~sa~ei~~~l~~~ 47 (136)
T 1mzb_A 35 MSAEDVYKALMEA 47 (136)
T ss_dssp BCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhh
Confidence 3344444444333
No 325
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.11 E-value=5.5e+02 Score=24.96 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=10.2
Q ss_pred CChHHHHHHHHHHHHcCCCCC
Q 006010 381 GKAEDAMKLWKQMMEKGCKPN 401 (664)
Q Consensus 381 ~~~~~a~~~~~~~~~~~~~~~ 401 (664)
.+.+.|+.++.+|.+.|..|.
T Consensus 269 sd~daAl~~la~ml~~Gedp~ 289 (447)
T 3pvs_A 269 SAPDAALYWYARIITAGGDPL 289 (447)
T ss_dssp TCHHHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 444555555555555444433
No 326
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.87 E-value=72 Score=26.72 Aligned_cols=77 Identities=14% Similarity=0.177 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHhCCCCcCHHHHH----HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 006010 99 FKSLEMVLYRMRREKRVVLEKSFI----FIFKAYGKAHLVEEAIRLFHTMVDEFHCKRTVKSFNSVLNVIIQEGLYHRAL 174 (664)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 174 (664)
++.|..+|+.+.+........... ..+..|.+.|.+++|.++|++.... .+.+...-..|+....+.+.+...+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~--~~~~~~lr~kL~~II~~Kd~~H~~l 171 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD--PNSHMPFKSKLLMIISQKDTFHSFF 171 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-------CCTTHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC--CCCchHHHHHHHHHHHccCCCcHHH
Q ss_pred HHH
Q 006010 175 EFY 177 (664)
Q Consensus 175 ~~~ 177 (664)
+-|
T Consensus 172 qnF 174 (211)
T 3bqo_A 172 QHF 174 (211)
T ss_dssp HHS
T ss_pred HHc
No 327
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.82 E-value=1.8e+02 Score=22.98 Aligned_cols=47 Identities=6% Similarity=0.066 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006010 87 YSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHL 133 (664)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (664)
..++..+...+.+-.|.++++.+.+.++..+..+.+..+..+...|-
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34455555556666777777777766655566665555566555553
No 328
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=21.81 E-value=6.8e+02 Score=25.92 Aligned_cols=17 Identities=24% Similarity=0.141 Sum_probs=14.1
Q ss_pred HhcccchHHHHHHHHHh
Q 006010 644 ELCRPKRIQAAINKCWS 660 (664)
Q Consensus 644 ~~~~~g~~~~A~~~~~~ 660 (664)
.+...|++++|++.+++
T Consensus 547 ~~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 547 ELYFNKQWQETLSQMEL 563 (661)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 34789999999998776
No 329
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.69 E-value=3.6e+02 Score=22.66 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=13.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006010 557 QSNISHSIDLLNSMMDRGCDPDLVTCN 583 (664)
Q Consensus 557 ~g~~~~A~~~~~~~~~~~~~p~~~~~~ 583 (664)
-.+.+.|+-++-+|++.|..|....-.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRR 46 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARR 46 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 345555555555555555544443333
No 330
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.59 E-value=3.2e+02 Score=22.06 Aligned_cols=51 Identities=4% Similarity=-0.057 Sum_probs=28.1
Q ss_pred cCChhHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCChhHHHHHHHHHHH
Q 006010 240 ENRLDEAVLLLDEMQVDGCFP--TPVTFNVLIN-G-----LCKNGELGRAAKLVDNMFL 290 (664)
Q Consensus 240 ~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~~~~ 290 (664)
.|++-+|-++++.+-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 366777777777665543333 3344555554 1 2345666666666666543
No 331
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.36 E-value=70 Score=30.00 Aligned_cols=64 Identities=11% Similarity=0.127 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHhCCCC
Q 006010 439 TYSSLMKGFFESGKGHKAVEIWKDMAKNNCVYNEVCYSVLIHGLCEDG--KLREARMVWTQMLSRGCK 504 (664)
Q Consensus 439 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~ 504 (664)
-...++.-|...|+.++|.+.++++.... ........++......+ ..+.+..++..+.+.|+-
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~--~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPS--LLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGG--GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcc--cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 35678889999999999999988774311 11111222222222222 234455666667665543
No 332
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.82 E-value=1.7e+02 Score=23.31 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006010 87 YSLIQHYANSGDFKSLEMVLYRMRREKRVVLEKSFIFIFKAYGKAHL 133 (664)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (664)
..++..+...+.+-.|.++++.+.+.++..+..+.+..+..+...|-
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34555555555666777777777666555555555555555555553
No 333
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=20.43 E-value=2.3e+02 Score=23.22 Aligned_cols=16 Identities=0% Similarity=0.092 Sum_probs=8.7
Q ss_pred HHhcCChhHHHHHHhh
Q 006010 202 VCRLGLVDNAIQLFRE 217 (664)
Q Consensus 202 ~~~~g~~~~A~~~~~~ 217 (664)
.+..|+.+....++..
T Consensus 12 A~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 12 AANQRDTKKVKEILQD 27 (201)
T ss_dssp HHHTTCHHHHHHHHTC
T ss_pred HHHhccHHHHHHHHHc
Confidence 3445666665555543
No 334
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=20.15 E-value=1.6e+02 Score=24.23 Aligned_cols=16 Identities=6% Similarity=0.100 Sum_probs=9.2
Q ss_pred HHHhcCChhHHHHHHH
Q 006010 236 GLCKENRLDEAVLLLD 251 (664)
Q Consensus 236 ~~~~~g~~~~a~~~~~ 251 (664)
..+..|+.+....++.
T Consensus 11 ~A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 11 EAANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHHTTCHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHH
Confidence 3455666666655554
Done!