Query 006012
Match_columns 664
No_of_seqs 788 out of 3565
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 17:04:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1E-69 2.3E-74 608.3 70.1 530 125-659 369-913 (1060)
2 PLN03077 Protein ECB2; Provisi 100.0 4.7E-70 1E-74 623.5 59.7 553 78-652 48-651 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 1.6E-66 3.5E-71 594.4 58.7 494 126-650 186-681 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.9E-65 4.1E-70 574.0 64.7 476 161-653 368-874 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 2.7E-61 5.9E-66 538.5 53.2 513 77-627 83-611 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.5E-60 5.4E-65 530.7 51.7 470 127-657 88-559 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-28 2.5E-33 287.8 67.4 496 139-652 375-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 9.6E-28 2.1E-32 280.0 67.6 498 136-650 304-861 (899)
9 PRK11447 cellulose synthase su 99.9 5E-20 1.1E-24 216.6 65.8 501 135-650 36-695 (1157)
10 PRK11447 cellulose synthase su 99.9 2.9E-19 6.4E-24 210.2 65.5 361 272-651 276-736 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 2.3E-19 4.9E-24 179.2 39.2 441 166-636 51-500 (966)
12 PRK09782 bacteriophage N4 rece 99.9 7.4E-17 1.6E-21 181.6 61.3 473 136-650 53-701 (987)
13 PRK11788 tetratricopeptide rep 99.9 1.6E-19 3.4E-24 189.4 35.0 302 273-592 43-354 (389)
14 KOG4626 O-linked N-acetylgluco 99.9 1.8E-18 3.9E-23 172.8 39.8 437 139-606 60-505 (966)
15 PRK11788 tetratricopeptide rep 99.9 3.2E-19 7E-24 187.0 36.5 304 306-627 41-354 (389)
16 TIGR00990 3a0801s09 mitochondr 99.9 6.6E-17 1.4E-21 178.7 50.2 401 231-651 130-567 (615)
17 TIGR00990 3a0801s09 mitochondr 99.8 4.9E-16 1.1E-20 171.8 51.3 399 195-620 129-571 (615)
18 PRK15174 Vi polysaccharide exp 99.8 1.8E-16 3.8E-21 174.8 44.5 324 232-567 46-374 (656)
19 PRK09782 bacteriophage N4 rece 99.8 1.2E-14 2.6E-19 163.9 58.9 476 141-651 122-736 (987)
20 PRK15174 Vi polysaccharide exp 99.8 1.9E-15 4.2E-20 166.6 49.0 336 193-540 42-382 (656)
21 PRK10049 pgaA outer membrane p 99.8 7.8E-15 1.7E-19 165.3 48.4 408 199-633 21-467 (765)
22 PRK10049 pgaA outer membrane p 99.8 6E-15 1.3E-19 166.2 46.7 401 227-652 14-453 (765)
23 KOG2002 TPR-containing nuclear 99.8 2.5E-14 5.3E-19 151.2 46.8 457 141-620 250-745 (1018)
24 KOG4422 Uncharacterized conser 99.8 3.7E-14 8E-19 136.5 43.8 439 193-654 116-589 (625)
25 PRK14574 hmsH outer membrane p 99.8 1.7E-13 3.6E-18 151.6 54.9 421 204-649 45-507 (822)
26 KOG2002 TPR-containing nuclear 99.8 7.8E-14 1.7E-18 147.5 48.7 492 143-650 146-704 (1018)
27 KOG4422 Uncharacterized conser 99.8 6E-14 1.3E-18 135.1 41.5 347 186-540 200-591 (625)
28 PRK14574 hmsH outer membrane p 99.7 2.7E-12 5.8E-17 142.2 55.6 428 139-627 46-518 (822)
29 KOG0495 HAT repeat protein [RN 99.7 5.2E-11 1.1E-15 120.9 52.6 487 142-652 361-877 (913)
30 KOG2003 TPR repeat-containing 99.6 1.6E-13 3.4E-18 132.9 27.2 435 195-640 203-708 (840)
31 KOG2076 RNA polymerase III tra 99.6 4E-10 8.7E-15 119.2 54.4 487 140-650 152-690 (895)
32 KOG0495 HAT repeat protein [RN 99.6 7.3E-10 1.6E-14 112.8 49.7 482 141-650 329-841 (913)
33 KOG2076 RNA polymerase III tra 99.6 1E-10 2.3E-15 123.5 39.6 355 275-646 149-546 (895)
34 KOG1155 Anaphase-promoting com 99.6 3.1E-10 6.7E-15 111.2 39.7 361 188-567 159-529 (559)
35 PRK10747 putative protoheme IX 99.6 3.4E-11 7.3E-16 125.4 35.9 279 278-569 97-385 (398)
36 TIGR00540 hemY_coli hemY prote 99.5 4.8E-11 1E-15 124.9 35.7 289 276-570 95-395 (409)
37 PRK10747 putative protoheme IX 99.5 1.3E-10 2.7E-15 121.1 37.6 247 381-650 129-385 (398)
38 TIGR00540 hemY_coli hemY prote 99.5 7.8E-11 1.7E-15 123.3 34.8 257 378-651 126-395 (409)
39 PF13429 TPR_15: Tetratricopep 99.5 1.4E-13 3.1E-18 136.7 13.4 262 270-538 13-276 (280)
40 KOG1155 Anaphase-promoting com 99.5 4.1E-10 8.9E-15 110.4 36.3 364 260-652 159-533 (559)
41 KOG1915 Cell cycle control pro 99.5 1.4E-08 3E-13 100.0 45.9 420 139-573 85-535 (677)
42 KOG1915 Cell cycle control pro 99.5 3.1E-08 6.7E-13 97.6 47.8 448 178-652 88-582 (677)
43 KOG2003 TPR repeat-containing 99.5 3.3E-10 7.1E-15 110.3 33.9 467 127-618 198-720 (840)
44 PF13429 TPR_15: Tetratricopep 99.5 2.1E-13 4.5E-18 135.6 12.4 258 375-650 13-272 (280)
45 COG2956 Predicted N-acetylgluc 99.5 6.4E-10 1.4E-14 104.2 31.7 276 277-559 47-329 (389)
46 KOG0547 Translocase of outer m 99.4 1.8E-09 3.8E-14 106.7 33.1 413 136-573 124-565 (606)
47 COG3071 HemY Uncharacterized e 99.4 4.7E-09 1E-13 101.7 35.3 283 277-569 96-385 (400)
48 COG3071 HemY Uncharacterized e 99.4 3.3E-09 7.1E-14 102.7 34.2 287 313-620 97-390 (400)
49 KOG1126 DNA-binding cell divis 99.4 1.7E-10 3.6E-15 118.4 26.5 277 280-567 334-613 (638)
50 COG2956 Predicted N-acetylgluc 99.4 3.2E-09 7E-14 99.6 31.1 286 313-619 48-346 (389)
51 KOG1126 DNA-binding cell divis 99.4 1.9E-10 4.1E-15 118.0 24.5 280 315-619 334-619 (638)
52 KOG0547 Translocase of outer m 99.4 3.7E-09 7.9E-14 104.4 31.6 221 379-619 335-565 (606)
53 KOG4318 Bicoid mRNA stability 99.3 5.5E-09 1.2E-13 110.1 32.8 82 368-452 202-283 (1088)
54 KOG1156 N-terminal acetyltrans 99.3 4.2E-07 9E-12 93.4 43.6 464 128-618 10-509 (700)
55 KOG1173 Anaphase-promoting com 99.3 6.6E-08 1.4E-12 97.6 36.4 476 141-650 30-513 (611)
56 KOG1156 N-terminal acetyltrans 99.3 3.9E-07 8.4E-12 93.6 42.4 434 193-657 8-470 (700)
57 KOG4318 Bicoid mRNA stability 99.3 6.6E-09 1.4E-13 109.5 29.9 374 214-638 11-391 (1088)
58 PRK12370 invasion protein regu 99.2 5.6E-09 1.2E-13 113.7 29.2 217 280-503 276-501 (553)
59 TIGR02521 type_IV_pilW type IV 99.2 1.2E-08 2.5E-13 98.3 27.7 199 264-466 30-229 (234)
60 PF13041 PPR_2: PPR repeat fam 99.2 2.5E-11 5.4E-16 84.8 6.3 50 191-240 1-50 (50)
61 PRK12370 invasion protein regu 99.2 1E-08 2.2E-13 111.7 29.6 250 350-620 276-535 (553)
62 KOG1840 Kinesin light chain [C 99.2 1.2E-08 2.7E-13 105.9 28.5 247 406-656 200-480 (508)
63 TIGR02521 type_IV_pilW type IV 99.2 1.5E-08 3.2E-13 97.6 27.8 198 300-501 31-229 (234)
64 PF13041 PPR_2: PPR repeat fam 99.2 5.6E-11 1.2E-15 83.0 6.9 50 473-522 1-50 (50)
65 KOG3785 Uncharacterized conser 99.2 5.9E-07 1.3E-11 85.5 35.4 438 139-619 34-489 (557)
66 KOG2047 mRNA splicing factor [ 99.2 1.3E-05 2.7E-10 82.6 47.1 394 139-538 114-578 (835)
67 KOG2376 Signal recognition par 99.1 3.8E-06 8.3E-11 85.6 40.8 444 169-650 18-515 (652)
68 PF12569 NARP1: NMDA receptor- 99.1 7.7E-07 1.7E-11 93.9 37.8 298 273-584 12-340 (517)
69 KOG1129 TPR repeat-containing 99.1 5.8E-09 1.3E-13 97.8 19.1 225 409-650 227-453 (478)
70 KOG1840 Kinesin light chain [C 99.1 1.1E-07 2.4E-12 98.9 29.4 241 371-618 200-477 (508)
71 PF12569 NARP1: NMDA receptor- 99.1 4.1E-07 9E-12 95.9 33.9 294 306-619 10-333 (517)
72 KOG1173 Anaphase-promoting com 99.1 1.7E-07 3.7E-12 94.8 28.8 286 263-556 242-533 (611)
73 KOG4162 Predicted calmodulin-b 99.1 7.4E-06 1.6E-10 86.2 40.5 383 259-650 317-778 (799)
74 KOG1174 Anaphase-promoting com 99.1 5.5E-06 1.2E-10 80.7 36.4 241 401-650 228-495 (564)
75 KOG1129 TPR repeat-containing 99.0 4.1E-08 8.9E-13 92.2 20.1 229 303-538 226-457 (478)
76 KOG2047 mRNA splicing factor [ 99.0 5.3E-05 1.1E-09 78.2 54.2 361 195-569 104-535 (835)
77 KOG1174 Anaphase-promoting com 99.0 2.8E-05 6.2E-10 75.9 38.8 294 267-569 196-495 (564)
78 KOG3616 Selective LIM binding 99.0 4.3E-06 9.2E-11 86.8 33.9 195 341-569 738-932 (1636)
79 KOG3785 Uncharacterized conser 99.0 2.1E-05 4.6E-10 75.2 35.7 463 139-653 69-547 (557)
80 PRK11189 lipoprotein NlpI; Pro 99.0 1.2E-06 2.6E-11 87.4 29.1 232 384-631 40-275 (296)
81 KOG4162 Predicted calmodulin-b 98.9 1E-05 2.2E-10 85.1 35.9 125 442-569 652-778 (799)
82 KOG3616 Selective LIM binding 98.9 4.5E-05 9.8E-10 79.5 39.7 295 199-534 738-1058(1636)
83 PRK11189 lipoprotein NlpI; Pro 98.9 1.4E-06 3E-11 86.9 27.8 225 279-513 40-273 (296)
84 KOG3617 WD40 and TPR repeat-co 98.9 1.3E-05 2.8E-10 84.5 34.5 400 162-644 725-1189(1416)
85 KOG3617 WD40 and TPR repeat-co 98.9 0.00019 4.2E-09 76.0 42.7 461 139-654 740-1358(1416)
86 cd05804 StaR_like StaR_like; a 98.9 1.8E-05 3.9E-10 81.8 36.0 208 407-619 116-335 (355)
87 KOG0985 Vesicle coat protein c 98.9 3E-05 6.4E-10 83.6 36.2 353 250-651 967-1337(1666)
88 cd05804 StaR_like StaR_like; a 98.9 2.7E-05 5.8E-10 80.5 35.7 298 267-569 8-331 (355)
89 COG3063 PilF Tfp pilus assembl 98.8 4.2E-06 9.2E-11 75.6 24.9 199 267-469 37-236 (250)
90 COG3063 PilF Tfp pilus assembl 98.8 6.1E-06 1.3E-10 74.6 24.8 194 411-619 41-235 (250)
91 KOG2376 Signal recognition par 98.8 0.00031 6.6E-09 72.2 40.3 372 175-567 91-513 (652)
92 KOG4340 Uncharacterized conser 98.8 4.5E-05 9.8E-10 71.4 30.2 297 264-571 43-372 (459)
93 KOG0548 Molecular co-chaperone 98.8 6.3E-05 1.4E-09 76.3 33.4 383 139-540 14-456 (539)
94 PRK04841 transcriptional regul 98.7 0.00013 2.8E-09 85.5 41.2 369 268-650 344-755 (903)
95 KOG1127 TPR repeat-containing 98.7 0.00023 5E-09 77.2 36.9 493 142-648 473-1029(1238)
96 KOG0548 Molecular co-chaperone 98.7 0.0001 2.3E-09 74.8 32.4 394 201-630 10-463 (539)
97 KOG0624 dsRNA-activated protei 98.7 0.0002 4.4E-09 68.5 32.3 315 263-619 36-369 (504)
98 KOG1127 TPR repeat-containing 98.7 0.00033 7.1E-09 76.1 37.0 145 142-292 507-657 (1238)
99 KOG0624 dsRNA-activated protei 98.7 0.00029 6.3E-09 67.4 31.8 324 299-654 37-369 (504)
100 PRK04841 transcriptional regul 98.7 0.00018 4E-09 84.3 38.5 340 275-621 384-761 (903)
101 PF04733 Coatomer_E: Coatomer 98.6 3.4E-06 7.4E-11 82.9 20.0 137 414-561 111-251 (290)
102 KOG1125 TPR repeat-containing 98.6 4.9E-06 1.1E-10 84.8 20.9 262 309-612 294-563 (579)
103 KOG1914 mRNA cleavage and poly 98.6 0.0012 2.6E-08 67.3 40.6 409 154-569 13-496 (656)
104 KOG0985 Vesicle coat protein c 98.6 0.0017 3.7E-08 70.7 38.9 320 191-569 982-1303(1666)
105 PF04733 Coatomer_E: Coatomer 98.6 3.4E-06 7.3E-11 83.0 17.2 249 275-539 11-265 (290)
106 PLN02789 farnesyltranstransfer 98.5 0.00018 3.8E-09 71.9 28.6 212 270-487 42-267 (320)
107 PF12854 PPR_1: PPR repeat 98.5 1.3E-07 2.8E-12 59.2 4.0 34 585-618 1-34 (34)
108 PF12854 PPR_1: PPR repeat 98.5 1.4E-07 3.1E-12 59.0 4.1 32 470-501 2-33 (34)
109 KOG4340 Uncharacterized conser 98.5 0.00028 6.2E-09 66.2 27.0 319 167-501 14-372 (459)
110 KOG1125 TPR repeat-containing 98.5 3E-05 6.5E-10 79.3 22.1 261 273-567 293-564 (579)
111 PLN02789 farnesyltranstransfer 98.5 0.0002 4.3E-09 71.5 27.7 207 310-522 47-267 (320)
112 KOG1128 Uncharacterized conser 98.5 0.00012 2.6E-09 77.0 26.2 218 333-571 396-613 (777)
113 KOG1070 rRNA processing protei 98.5 7.6E-05 1.6E-09 83.4 26.1 227 402-643 1455-1688(1710)
114 KOG1070 rRNA processing protei 98.4 0.00014 3E-09 81.5 27.1 205 299-508 1457-1667(1710)
115 KOG1128 Uncharacterized conser 98.4 3.3E-05 7.2E-10 81.0 20.4 240 297-557 395-635 (777)
116 PRK14720 transcript cleavage f 98.3 0.00023 5E-09 79.1 26.1 221 262-521 28-268 (906)
117 COG4783 Putative Zn-dependent 98.3 0.00066 1.4E-08 68.5 26.8 149 449-630 315-463 (484)
118 TIGR03302 OM_YfiO outer membra 98.3 0.00012 2.6E-09 70.7 21.6 188 262-469 30-232 (235)
119 KOG3081 Vesicle coat complex C 98.3 0.0017 3.6E-08 60.4 25.4 134 305-449 113-250 (299)
120 PRK14720 transcript cleavage f 98.2 0.00077 1.7E-08 75.1 27.6 170 190-399 28-198 (906)
121 TIGR03302 OM_YfiO outer membra 98.2 0.00019 4.1E-09 69.2 20.7 68 298-365 31-100 (235)
122 PRK10370 formate-dependent nit 98.2 0.00032 6.9E-09 65.1 20.4 124 383-510 52-178 (198)
123 PRK10370 formate-dependent nit 98.2 0.00036 7.7E-09 64.8 20.3 149 377-540 23-174 (198)
124 KOG1914 mRNA cleavage and poly 98.2 0.012 2.5E-07 60.3 43.8 140 184-329 11-166 (656)
125 COG5010 TadD Flp pilus assembl 98.2 0.00069 1.5E-08 63.0 21.1 134 262-398 97-230 (257)
126 KOG3081 Vesicle coat complex C 98.1 0.0055 1.2E-07 57.1 26.4 107 452-563 149-259 (299)
127 PRK15179 Vi polysaccharide bio 98.1 0.0014 3.1E-08 72.2 26.5 239 189-452 24-267 (694)
128 COG5010 TadD Flp pilus assembl 98.1 0.00097 2.1E-08 62.0 20.8 156 409-568 70-225 (257)
129 PRK15179 Vi polysaccharide bio 98.1 0.0018 4E-08 71.4 26.7 220 260-504 23-245 (694)
130 PRK15359 type III secretion sy 98.1 0.00019 4.1E-09 63.0 15.5 96 268-365 27-122 (144)
131 TIGR00756 PPR pentatricopeptid 98.1 6.6E-06 1.4E-10 52.2 4.5 34 195-228 2-35 (35)
132 PRK15359 type III secretion sy 98.0 0.00031 6.6E-09 61.6 15.0 91 412-504 31-121 (144)
133 COG4783 Putative Zn-dependent 98.0 0.0043 9.4E-08 62.8 23.8 112 346-461 317-429 (484)
134 PF13812 PPR_3: Pentatricopept 97.9 1.7E-05 3.7E-10 49.9 4.1 33 194-226 2-34 (34)
135 TIGR00756 PPR pentatricopeptid 97.9 2.4E-05 5.1E-10 49.6 4.5 33 593-625 2-34 (35)
136 TIGR02552 LcrH_SycD type III s 97.9 0.00074 1.6E-08 58.6 15.4 97 441-539 18-114 (135)
137 KOG3060 Uncharacterized conser 97.9 0.012 2.6E-07 54.5 22.9 185 419-619 26-219 (289)
138 KOG2053 Mitochondrial inherita 97.8 0.079 1.7E-06 57.8 52.4 217 140-367 22-258 (932)
139 PF13812 PPR_3: Pentatricopept 97.8 3.8E-05 8.3E-10 48.3 4.5 33 592-624 2-34 (34)
140 TIGR02552 LcrH_SycD type III s 97.8 0.0012 2.6E-08 57.2 15.3 95 408-504 20-114 (135)
141 KOG2053 Mitochondrial inherita 97.7 0.12 2.6E-06 56.5 51.2 500 121-653 36-606 (932)
142 PF01535 PPR: PPR repeat; Int 97.7 3.7E-05 8.1E-10 47.1 3.1 31 194-224 1-31 (31)
143 PF10037 MRP-S27: Mitochondria 97.7 0.00075 1.6E-08 69.1 13.7 123 506-639 62-186 (429)
144 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0017 3.6E-08 66.3 16.2 125 267-397 171-295 (395)
145 PF09976 TPR_21: Tetratricopep 97.7 0.0033 7.2E-08 55.2 16.1 124 268-395 15-143 (145)
146 KOG3060 Uncharacterized conser 97.6 0.053 1.1E-06 50.4 25.9 162 268-433 55-219 (289)
147 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0021 4.5E-08 65.6 16.3 117 446-569 175-292 (395)
148 PF09976 TPR_21: Tetratricopep 97.6 0.0023 5E-08 56.3 14.4 115 523-650 24-142 (145)
149 PF10037 MRP-S27: Mitochondria 97.6 0.001 2.2E-08 68.2 13.4 123 296-418 62-186 (429)
150 KOG2041 WD40 repeat protein [G 97.6 0.048 1E-06 57.6 25.0 58 593-650 1023-1084(1189)
151 PF08579 RPM2: Mitochondrial r 97.6 0.0013 2.7E-08 52.9 10.5 77 271-347 31-116 (120)
152 PF01535 PPR: PPR repeat; Int 97.5 0.00011 2.3E-09 45.0 3.2 31 592-622 1-31 (31)
153 PF08579 RPM2: Mitochondrial r 97.4 0.004 8.6E-08 50.1 11.9 87 514-603 29-116 (120)
154 KOG1130 Predicted G-alpha GTPa 97.4 0.0018 4E-08 63.6 11.6 134 511-650 196-339 (639)
155 cd00189 TPR Tetratricopeptide 97.4 0.0036 7.9E-08 49.6 12.0 93 269-363 4-96 (100)
156 cd00189 TPR Tetratricopeptide 97.3 0.0042 9.1E-08 49.2 11.8 88 448-537 8-95 (100)
157 PF06239 ECSIT: Evolutionarily 97.3 0.0036 7.7E-08 56.9 11.7 97 508-606 45-153 (228)
158 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.013 2.8E-07 49.2 14.3 59 340-398 44-104 (119)
159 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.013 2.8E-07 49.2 14.3 100 267-366 4-107 (119)
160 PF14938 SNAP: Soluble NSF att 97.2 0.1 2.2E-06 51.7 22.0 112 378-504 102-225 (282)
161 PF06239 ECSIT: Evolutionarily 97.2 0.0079 1.7E-07 54.7 12.5 104 191-315 45-153 (228)
162 PRK15363 pathogenicity island 97.2 0.013 2.9E-07 50.8 13.3 93 269-363 39-131 (157)
163 KOG1130 Predicted G-alpha GTPa 97.1 0.043 9.3E-07 54.4 17.6 50 274-324 26-79 (639)
164 PRK15363 pathogenicity island 97.1 0.018 3.9E-07 50.0 13.4 97 300-398 35-131 (157)
165 PRK02603 photosystem I assembl 97.1 0.034 7.3E-07 50.5 16.3 91 264-355 34-126 (172)
166 PF05843 Suf: Suppressor of fo 97.1 0.018 3.9E-07 56.8 15.3 128 267-398 3-135 (280)
167 KOG0553 TPR repeat-containing 97.1 0.0073 1.6E-07 57.5 11.8 95 521-631 92-187 (304)
168 PRK10866 outer membrane biogen 97.1 0.31 6.7E-06 46.9 23.1 57 307-364 39-98 (243)
169 CHL00033 ycf3 photosystem I as 97.1 0.022 4.8E-07 51.4 14.5 105 475-584 35-148 (168)
170 PRK10153 DNA-binding transcrip 97.0 0.15 3.2E-06 54.8 22.7 158 168-329 312-482 (517)
171 CHL00033 ycf3 photosystem I as 97.0 0.014 3E-07 52.8 12.9 96 440-536 35-139 (168)
172 PF04840 Vps16_C: Vps16, C-ter 97.0 0.44 9.5E-06 47.7 28.2 106 442-567 179-284 (319)
173 PLN03088 SGT1, suppressor of 97.0 0.017 3.6E-07 59.2 14.7 93 411-505 8-100 (356)
174 PRK02603 photosystem I assembl 97.0 0.059 1.3E-06 48.9 16.9 112 444-560 39-166 (172)
175 PF05843 Suf: Suppressor of fo 97.0 0.018 3.8E-07 56.9 14.3 129 407-538 3-135 (280)
176 PRK10866 outer membrane biogen 97.0 0.2 4.2E-06 48.2 20.9 177 340-536 37-238 (243)
177 PRK10153 DNA-binding transcrip 97.0 0.049 1.1E-06 58.4 18.4 142 472-629 334-489 (517)
178 PLN03088 SGT1, suppressor of 97.0 0.03 6.4E-07 57.4 16.1 92 272-365 9-100 (356)
179 KOG0550 Molecular chaperone (D 97.0 0.48 1E-05 47.4 23.9 57 271-328 55-111 (486)
180 PF12895 Apc3: Anaphase-promot 96.9 0.002 4.2E-08 50.5 5.6 18 306-323 31-48 (84)
181 PF12895 Apc3: Anaphase-promot 96.9 0.0021 4.5E-08 50.3 5.7 20 481-500 31-50 (84)
182 KOG2280 Vacuolar assembly/sort 96.9 0.9 1.9E-05 49.0 27.1 108 477-614 686-793 (829)
183 PF14938 SNAP: Soluble NSF att 96.9 0.17 3.6E-06 50.1 19.9 90 309-398 123-224 (282)
184 KOG0553 TPR repeat-containing 96.8 0.017 3.8E-07 55.0 11.2 95 451-549 92-186 (304)
185 COG4700 Uncharacterized protei 96.7 0.3 6.4E-06 43.3 17.6 96 472-567 86-182 (251)
186 KOG1538 Uncharacterized conser 96.7 0.2 4.2E-06 52.7 19.0 53 442-503 749-801 (1081)
187 PF07079 DUF1347: Protein of u 96.6 1 2.2E-05 45.8 43.5 365 275-651 89-520 (549)
188 PF14559 TPR_19: Tetratricopep 96.5 0.0099 2.2E-07 44.2 6.6 52 277-329 3-54 (68)
189 KOG0550 Molecular chaperone (D 96.5 0.3 6.4E-06 48.8 17.9 224 308-538 57-315 (486)
190 KOG1538 Uncharacterized conser 96.5 0.38 8.2E-06 50.7 19.3 94 298-396 554-658 (1081)
191 KOG2041 WD40 repeat protein [G 96.5 1.6 3.6E-05 46.6 31.2 52 513-564 1024-1076(1189)
192 PF13432 TPR_16: Tetratricopep 96.5 0.016 3.5E-07 42.6 7.3 57 272-329 4-60 (65)
193 PF12688 TPR_5: Tetratrico pep 96.5 0.2 4.3E-06 41.9 14.5 90 273-362 9-102 (120)
194 KOG2796 Uncharacterized conser 96.4 0.33 7.2E-06 45.5 16.6 143 407-552 179-326 (366)
195 PF13414 TPR_11: TPR repeat; P 96.4 0.015 3.4E-07 43.3 7.0 63 265-328 3-66 (69)
196 PF14559 TPR_19: Tetratricopep 96.4 0.016 3.4E-07 43.1 6.9 53 311-364 2-54 (68)
197 COG4235 Cytochrome c biogenesi 96.3 0.47 1E-05 45.8 18.0 101 262-364 153-256 (287)
198 PF13414 TPR_11: TPR repeat; P 96.3 0.019 4.2E-07 42.8 7.0 63 475-538 3-66 (69)
199 PF13432 TPR_16: Tetratricopep 96.3 0.019 4E-07 42.2 6.7 55 483-538 5-59 (65)
200 PF13525 YfiO: Outer membrane 96.2 0.44 9.5E-06 44.5 17.3 80 481-564 116-197 (203)
201 PF12688 TPR_5: Tetratrico pep 96.2 0.31 6.7E-06 40.8 14.2 87 482-568 8-98 (120)
202 PF07079 DUF1347: Protein of u 96.1 2 4.3E-05 43.8 38.5 216 111-328 62-326 (549)
203 COG4700 Uncharacterized protei 96.1 0.98 2.1E-05 40.2 18.9 127 437-567 86-215 (251)
204 PF13281 DUF4071: Domain of un 96.1 2 4.2E-05 43.6 23.6 171 445-620 146-334 (374)
205 KOG2796 Uncharacterized conser 96.1 1.3 2.9E-05 41.6 24.3 132 302-434 179-315 (366)
206 PF13525 YfiO: Outer membrane 96.0 0.9 2E-05 42.4 18.4 49 481-529 147-197 (203)
207 PF12921 ATP13: Mitochondrial 96.0 0.066 1.4E-06 45.3 9.6 55 585-639 46-101 (126)
208 COG4235 Cytochrome c biogenesi 96.0 0.46 1E-05 45.8 16.1 102 297-400 153-257 (287)
209 PF04840 Vps16_C: Vps16, C-ter 96.0 2 4.4E-05 43.0 24.6 109 337-465 179-287 (319)
210 PRK10803 tol-pal system protei 95.8 0.18 3.9E-06 48.9 12.8 97 266-364 144-246 (263)
211 PF03704 BTAD: Bacterial trans 95.7 0.075 1.6E-06 46.6 9.1 70 478-548 65-139 (146)
212 PRK15331 chaperone protein Sic 95.6 0.16 3.5E-06 44.4 10.5 82 486-569 48-129 (165)
213 PF13424 TPR_12: Tetratricopep 95.6 0.055 1.2E-06 41.4 7.0 69 545-619 5-74 (78)
214 KOG3941 Intermediate in Toll s 95.5 0.36 7.7E-06 45.7 12.7 107 188-315 62-173 (406)
215 PRK10803 tol-pal system protei 95.5 0.32 6.9E-06 47.2 13.2 25 408-432 183-207 (263)
216 PF13424 TPR_12: Tetratricopep 95.5 0.069 1.5E-06 40.9 7.1 59 592-650 6-70 (78)
217 PF03704 BTAD: Bacterial trans 95.4 0.1 2.2E-06 45.8 9.0 124 193-338 3-139 (146)
218 KOG2280 Vacuolar assembly/sort 95.4 5.1 0.00011 43.6 32.0 320 293-648 425-792 (829)
219 PF13371 TPR_9: Tetratricopept 95.3 0.12 2.7E-06 38.8 8.0 55 484-539 4-58 (73)
220 COG3898 Uncharacterized membra 95.2 3.8 8.2E-05 41.0 31.5 278 278-568 97-386 (531)
221 PF13371 TPR_9: Tetratricopept 95.2 0.092 2E-06 39.5 7.0 56 273-329 3-58 (73)
222 PF12921 ATP13: Mitochondrial 95.1 0.37 8E-06 40.7 10.9 56 505-560 47-103 (126)
223 COG5107 RNA14 Pre-mRNA 3'-end 95.1 4.6 9.9E-05 41.2 35.6 89 148-241 30-122 (660)
224 PF13281 DUF4071: Domain of un 94.8 5.3 0.00012 40.6 20.7 172 340-539 146-334 (374)
225 smart00299 CLH Clathrin heavy 94.8 2.4 5.2E-05 36.7 15.7 40 307-347 14-53 (140)
226 KOG0543 FKBP-type peptidyl-pro 94.7 2 4.4E-05 43.2 16.4 137 201-363 216-354 (397)
227 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.68 1.5E-05 47.6 13.4 66 472-539 72-141 (453)
228 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.51 1.1E-05 48.5 12.4 66 262-329 72-141 (453)
229 PF04053 Coatomer_WDAD: Coatom 94.5 1.1 2.4E-05 47.1 14.8 157 308-499 269-426 (443)
230 smart00299 CLH Clathrin heavy 94.4 2.5 5.5E-05 36.5 15.0 84 445-536 12-95 (140)
231 PRK15331 chaperone protein Sic 94.3 0.54 1.2E-05 41.2 10.2 88 274-363 46-133 (165)
232 KOG1920 IkappaB kinase complex 94.3 13 0.00028 43.0 24.5 81 446-537 971-1053(1265)
233 PF04097 Nic96: Nup93/Nic96; 94.3 11 0.00023 42.0 22.9 60 270-330 116-182 (613)
234 PF09205 DUF1955: Domain of un 94.3 2.7 6E-05 35.2 14.7 58 482-540 93-150 (161)
235 PF07035 Mic1: Colon cancer-as 94.3 3.7 8E-05 36.5 16.5 136 495-655 14-149 (167)
236 KOG1941 Acetylcholine receptor 94.1 4.2 9.2E-05 40.2 16.5 167 477-650 85-270 (518)
237 PF09205 DUF1955: Domain of un 94.1 3.1 6.7E-05 34.9 14.3 65 441-506 87-151 (161)
238 KOG3941 Intermediate in Toll s 94.1 0.86 1.9E-05 43.3 11.4 33 318-350 141-173 (406)
239 PF04053 Coatomer_WDAD: Coatom 93.9 1.9 4E-05 45.4 15.0 159 272-465 268-427 (443)
240 KOG0543 FKBP-type peptidyl-pro 93.7 1.2 2.7E-05 44.7 12.6 96 441-538 258-354 (397)
241 PF13170 DUF4003: Protein of u 93.6 8.2 0.00018 38.2 20.2 127 283-411 80-223 (297)
242 PF10300 DUF3808: Protein of u 93.6 3.6 7.9E-05 43.9 16.9 118 278-398 246-375 (468)
243 PF10300 DUF3808: Protein of u 93.3 7.6 0.00016 41.5 18.8 162 480-652 193-373 (468)
244 KOG4555 TPR repeat-containing 93.0 3.6 7.8E-05 34.4 12.0 92 273-366 51-146 (175)
245 KOG1585 Protein required for f 92.9 8.2 0.00018 36.2 17.9 87 266-362 32-118 (308)
246 PF13170 DUF4003: Protein of u 92.8 5.6 0.00012 39.4 15.8 24 456-479 78-101 (297)
247 PF08631 SPO22: Meiosis protei 92.6 12 0.00025 37.0 25.9 162 476-651 85-271 (278)
248 KOG2114 Vacuolar assembly/sort 92.5 15 0.00033 40.7 19.2 176 338-536 337-516 (933)
249 PRK11906 transcriptional regul 92.4 8.1 0.00018 40.1 16.4 109 456-567 274-394 (458)
250 COG3629 DnrI DNA-binding trans 92.4 1.6 3.5E-05 42.3 10.9 78 476-554 154-236 (280)
251 KOG1920 IkappaB kinase complex 92.1 28 0.00061 40.4 21.5 92 437-538 932-1027(1265)
252 KOG2114 Vacuolar assembly/sort 92.0 23 0.00051 39.3 25.3 176 167-362 338-517 (933)
253 PF08631 SPO22: Meiosis protei 91.9 14 0.0003 36.4 25.5 171 441-618 85-273 (278)
254 COG4105 ComL DNA uptake lipopr 91.8 12 0.00026 35.5 21.5 57 596-653 172-231 (254)
255 COG0457 NrfG FOG: TPR repeat [ 91.8 11 0.00024 35.0 31.0 202 336-539 60-265 (291)
256 COG1729 Uncharacterized protei 91.4 3.5 7.6E-05 39.4 11.8 96 267-364 144-244 (262)
257 PF13428 TPR_14: Tetratricopep 91.4 0.64 1.4E-05 30.8 5.2 41 592-633 2-42 (44)
258 COG3118 Thioredoxin domain-con 91.3 15 0.00032 35.7 18.3 122 274-399 143-265 (304)
259 KOG1941 Acetylcholine receptor 91.3 17 0.00037 36.2 20.0 162 408-569 86-270 (518)
260 KOG4555 TPR repeat-containing 91.2 8.1 0.00017 32.4 12.0 90 309-400 52-145 (175)
261 COG4105 ComL DNA uptake lipopr 91.2 14 0.0003 35.1 21.2 84 193-311 34-117 (254)
262 KOG2610 Uncharacterized conser 90.9 5.7 0.00012 38.9 12.7 155 310-467 113-274 (491)
263 PRK11619 lytic murein transgly 90.7 32 0.00068 38.4 38.3 273 148-432 84-373 (644)
264 COG1729 Uncharacterized protei 90.7 3.8 8.3E-05 39.1 11.3 80 488-567 154-237 (262)
265 KOG1585 Protein required for f 90.5 15 0.00033 34.5 18.3 86 195-292 33-118 (308)
266 KOG2066 Vacuolar assembly/sort 90.5 32 0.00069 38.0 29.4 99 170-277 363-467 (846)
267 COG5107 RNA14 Pre-mRNA 3'-end 90.3 24 0.00052 36.3 37.1 139 475-628 397-537 (660)
268 PF13428 TPR_14: Tetratricopep 90.2 1.2 2.6E-05 29.4 5.7 27 478-504 4-30 (44)
269 KOG2610 Uncharacterized conser 90.2 20 0.00044 35.3 17.1 117 382-501 115-235 (491)
270 COG3629 DnrI DNA-binding trans 90.1 4.1 8.8E-05 39.6 11.1 85 510-601 153-237 (280)
271 COG0457 NrfG FOG: TPR repeat [ 90.0 16 0.00034 33.8 30.1 224 278-505 36-266 (291)
272 PRK11906 transcriptional regul 89.9 27 0.00059 36.4 17.6 80 317-398 321-400 (458)
273 PF06552 TOM20_plant: Plant sp 89.9 3.7 8.1E-05 36.6 9.8 116 526-656 7-137 (186)
274 PF13512 TPR_18: Tetratricopep 89.9 12 0.00026 32.2 12.8 71 486-556 21-93 (142)
275 PF13176 TPR_7: Tetratricopept 89.8 0.75 1.6E-05 28.9 4.2 26 593-618 1-26 (36)
276 PF13176 TPR_7: Tetratricopept 89.7 0.82 1.8E-05 28.7 4.2 26 195-220 1-26 (36)
277 COG4649 Uncharacterized protei 89.5 15 0.00031 32.7 14.3 123 276-398 69-195 (221)
278 COG3118 Thioredoxin domain-con 89.0 23 0.00051 34.4 18.4 50 509-559 235-286 (304)
279 PF00515 TPR_1: Tetratricopept 89.0 1 2.2E-05 27.7 4.3 32 592-625 2-33 (34)
280 PF10602 RPN7: 26S proteasome 88.7 7.2 0.00016 35.3 11.3 63 266-328 37-101 (177)
281 PF04184 ST7: ST7 protein; In 88.6 35 0.00075 35.9 17.3 53 449-501 268-321 (539)
282 PF07035 Mic1: Colon cancer-as 88.1 19 0.0004 32.1 15.1 31 288-318 17-47 (167)
283 COG3898 Uncharacterized membra 87.8 33 0.00072 34.7 34.3 252 276-543 131-396 (531)
284 PF13431 TPR_17: Tetratricopep 87.5 0.65 1.4E-05 28.8 2.6 32 614-646 2-33 (34)
285 PF13512 TPR_18: Tetratricopep 87.1 18 0.00039 31.1 11.9 53 381-433 21-75 (142)
286 KOG2066 Vacuolar assembly/sort 87.0 55 0.0012 36.3 29.0 102 272-382 363-467 (846)
287 PF13431 TPR_17: Tetratricopep 86.9 0.6 1.3E-05 28.9 2.2 23 160-182 10-32 (34)
288 PF07719 TPR_2: Tetratricopept 86.9 1.6 3.4E-05 26.6 4.3 27 593-619 3-29 (34)
289 PF09477 Type_III_YscG: Bacter 86.9 14 0.0003 29.8 10.1 88 139-231 18-106 (116)
290 COG4649 Uncharacterized protei 86.3 24 0.00051 31.4 14.3 122 347-468 70-195 (221)
291 PF13929 mRNA_stabil: mRNA sta 86.1 19 0.00041 35.0 12.7 120 205-324 140-262 (292)
292 PF02259 FAT: FAT domain; Int 86.0 43 0.00093 34.1 22.4 65 474-538 145-212 (352)
293 PF10602 RPN7: 26S proteasome 85.7 12 0.00025 34.0 10.9 59 338-396 39-99 (177)
294 COG1747 Uncharacterized N-term 85.4 52 0.0011 34.6 23.5 182 436-637 62-250 (711)
295 KOG2471 TPR repeat-containing 85.4 18 0.0004 37.5 12.8 115 519-639 249-382 (696)
296 PF00637 Clathrin: Region in C 85.0 0.035 7.7E-07 48.5 -5.7 84 446-536 13-96 (143)
297 PF06552 TOM20_plant: Plant sp 84.5 27 0.00059 31.3 12.0 121 491-622 7-138 (186)
298 TIGR02508 type_III_yscG type I 83.9 20 0.00043 28.5 10.4 86 141-231 19-105 (115)
299 PF11207 DUF2989: Protein of u 83.8 10 0.00023 34.6 9.4 72 574-646 124-198 (203)
300 PF09613 HrpB1_HrpK: Bacterial 83.3 31 0.00068 30.3 12.7 52 276-329 21-73 (160)
301 KOG4570 Uncharacterized conser 83.0 21 0.00045 34.9 11.4 105 294-400 58-165 (418)
302 PF04184 ST7: ST7 protein; In 82.8 67 0.0015 33.8 20.1 58 375-432 264-322 (539)
303 PRK09687 putative lyase; Provi 82.1 55 0.0012 32.2 28.6 29 298-326 66-98 (280)
304 KOG1550 Extracellular protein 81.9 86 0.0019 34.4 25.0 85 312-400 261-358 (552)
305 KOG0276 Vesicle coat complex C 81.9 28 0.00061 37.2 12.7 100 486-617 648-747 (794)
306 COG3947 Response regulator con 81.9 53 0.0011 31.9 15.7 58 409-467 283-340 (361)
307 COG2976 Uncharacterized protei 81.8 41 0.00089 30.6 13.1 23 598-620 166-188 (207)
308 PF00515 TPR_1: Tetratricopept 81.3 4.9 0.00011 24.5 4.7 29 194-222 2-30 (34)
309 KOG1586 Protein required for f 81.3 48 0.001 31.1 13.5 148 486-655 25-183 (288)
310 PF02284 COX5A: Cytochrome c o 80.8 15 0.00033 29.3 8.0 39 612-650 31-69 (108)
311 KOG0276 Vesicle coat complex C 80.6 15 0.00032 39.2 10.2 25 441-465 667-691 (794)
312 PF11207 DUF2989: Protein of u 80.0 17 0.00036 33.3 9.3 73 492-565 123-198 (203)
313 PF13374 TPR_10: Tetratricopep 79.9 4.6 9.9E-05 25.8 4.5 28 592-619 3-30 (42)
314 PF13374 TPR_10: Tetratricopep 79.5 5 0.00011 25.7 4.6 29 193-221 2-30 (42)
315 PF07719 TPR_2: Tetratricopept 79.3 6.1 0.00013 23.9 4.7 29 194-222 2-30 (34)
316 COG1747 Uncharacterized N-term 79.0 91 0.002 32.9 25.8 179 262-448 63-247 (711)
317 KOG4570 Uncharacterized conser 78.9 35 0.00075 33.5 11.4 48 420-467 115-162 (418)
318 PF13181 TPR_8: Tetratricopept 78.4 3.8 8.3E-05 24.9 3.5 27 593-619 3-29 (34)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 78.3 8 0.00017 30.5 5.8 40 579-618 30-69 (103)
320 PRK09687 putative lyase; Provi 77.4 77 0.0017 31.2 29.5 235 297-556 34-278 (280)
321 COG4455 ImpE Protein of avirul 75.8 19 0.00042 33.3 8.3 75 479-554 5-81 (273)
322 PF08424 NRDE-2: NRDE-2, neces 74.7 99 0.0022 31.1 18.2 129 491-625 47-189 (321)
323 KOG1550 Extracellular protein 74.1 1.4E+02 0.0031 32.7 28.3 180 316-505 228-427 (552)
324 COG3947 Response regulator con 73.9 92 0.002 30.4 17.1 62 593-655 281-342 (361)
325 KOG2063 Vacuolar assembly/sort 73.7 1.4E+02 0.003 34.4 16.1 41 377-417 598-638 (877)
326 PF09613 HrpB1_HrpK: Bacterial 72.4 69 0.0015 28.3 13.8 52 346-399 21-73 (160)
327 KOG4234 TPR repeat-containing 71.8 32 0.0007 31.4 8.6 21 519-539 104-124 (271)
328 PF00637 Clathrin: Region in C 71.8 1.5 3.2E-05 38.1 0.5 54 481-534 13-66 (143)
329 COG2909 MalT ATP-dependent tra 71.6 1.9E+02 0.0041 33.0 23.8 55 596-650 623-683 (894)
330 KOG1258 mRNA processing protei 71.3 1.6E+02 0.0034 31.9 36.5 186 439-640 296-489 (577)
331 PF07721 TPR_4: Tetratricopept 70.4 6.9 0.00015 22.3 2.9 22 629-650 4-25 (26)
332 PF13762 MNE1: Mitochondrial s 70.2 72 0.0016 27.6 11.7 94 325-418 27-128 (145)
333 PF13929 mRNA_stabil: mRNA sta 70.2 1.1E+02 0.0024 29.9 18.7 115 280-394 143-262 (292)
334 PF13174 TPR_6: Tetratricopept 70.0 8.9 0.00019 22.9 3.7 28 195-222 2-29 (33)
335 PF02284 COX5A: Cytochrome c o 69.3 58 0.0013 26.2 9.4 46 248-293 28-73 (108)
336 PF10579 Rapsyn_N: Rapsyn N-te 67.9 15 0.00032 27.9 4.8 46 603-648 18-65 (80)
337 KOG0292 Vesicle coat complex C 67.0 2.3E+02 0.005 32.3 20.6 130 274-433 652-781 (1202)
338 COG5159 RPN6 26S proteasome re 67.0 1.3E+02 0.0028 29.3 13.5 137 485-627 13-165 (421)
339 PHA02875 ankyrin repeat protei 67.0 1.2E+02 0.0027 31.7 13.9 139 202-358 8-155 (413)
340 KOG0687 26S proteasome regulat 66.8 1.4E+02 0.003 29.6 14.3 97 545-650 104-205 (393)
341 PF10345 Cohesin_load: Cohesin 66.1 2.2E+02 0.0048 31.7 32.5 186 316-502 37-252 (608)
342 PF13181 TPR_8: Tetratricopept 65.3 17 0.00038 21.8 4.3 29 194-222 2-30 (34)
343 PF07163 Pex26: Pex26 protein; 65.3 80 0.0017 30.6 10.3 56 443-498 121-181 (309)
344 PF10366 Vps39_1: Vacuolar sor 64.3 52 0.0011 26.9 8.0 49 593-641 41-94 (108)
345 KOG4077 Cytochrome c oxidase, 63.9 25 0.00054 29.3 5.8 36 584-619 77-112 (149)
346 COG4455 ImpE Protein of avirul 63.8 51 0.0011 30.6 8.4 54 272-326 8-61 (273)
347 KOG0890 Protein kinase of the 63.1 4.3E+02 0.0094 34.0 31.8 314 305-650 1388-1726(2382)
348 PRK15180 Vi polysaccharide bio 63.1 2E+02 0.0042 30.2 13.1 125 272-400 296-421 (831)
349 KOG0403 Neoplastic transformat 62.2 2E+02 0.0044 29.9 19.7 56 166-221 181-242 (645)
350 KOG4642 Chaperone-dependent E3 62.1 1.5E+02 0.0032 28.2 11.2 80 485-568 20-101 (284)
351 KOG2063 Vacuolar assembly/sort 62.1 3E+02 0.0065 31.8 18.3 28 195-222 506-533 (877)
352 PF10579 Rapsyn_N: Rapsyn N-te 61.9 44 0.00095 25.4 6.4 47 522-568 18-66 (80)
353 KOG4234 TPR repeat-containing 60.9 1.2E+02 0.0026 27.9 10.0 90 309-399 104-197 (271)
354 KOG4648 Uncharacterized conser 60.8 66 0.0014 32.0 9.1 89 273-364 105-194 (536)
355 PHA02875 ankyrin repeat protei 60.6 1.8E+02 0.0039 30.4 13.7 132 251-394 16-156 (413)
356 cd00923 Cyt_c_Oxidase_Va Cytoc 60.4 85 0.0018 25.0 9.2 43 250-292 27-69 (103)
357 PF13174 TPR_6: Tetratricopept 59.9 15 0.00032 21.8 3.3 24 596-619 5-28 (33)
358 KOG1464 COP9 signalosome, subu 59.4 1.7E+02 0.0037 28.1 16.9 85 480-565 150-251 (440)
359 TIGR02561 HrpB1_HrpK type III 59.3 1.2E+02 0.0026 26.4 12.5 51 348-400 23-74 (153)
360 KOG4648 Uncharacterized conser 59.2 65 0.0014 32.0 8.7 53 343-397 105-158 (536)
361 KOG1258 mRNA processing protei 59.0 2.7E+02 0.0058 30.2 32.0 189 403-605 295-489 (577)
362 TIGR03504 FimV_Cterm FimV C-te 58.8 22 0.00049 23.5 4.0 26 596-621 4-29 (44)
363 PF02259 FAT: FAT domain; Int 58.7 2.1E+02 0.0045 28.9 26.6 65 404-468 145-212 (352)
364 smart00028 TPR Tetratricopepti 58.6 21 0.00045 20.2 3.9 27 593-619 3-29 (34)
365 KOG4507 Uncharacterized conser 58.2 59 0.0013 34.8 8.8 101 311-413 618-718 (886)
366 cd08819 CARD_MDA5_2 Caspase ac 56.9 66 0.0014 25.0 6.7 64 460-529 22-85 (88)
367 PF13762 MNE1: Mitochondrial s 56.8 1.3E+02 0.0029 26.1 12.9 59 590-649 78-137 (145)
368 COG4785 NlpI Lipoprotein NlpI, 55.7 1.8E+02 0.0039 27.2 18.0 182 419-620 79-266 (297)
369 TIGR02561 HrpB1_HrpK type III 55.6 1.4E+02 0.0031 26.0 11.8 52 277-330 22-74 (153)
370 PF07163 Pex26: Pex26 protein; 55.6 1.5E+02 0.0032 28.9 10.3 56 342-397 90-145 (309)
371 PF04097 Nic96: Nup93/Nic96; 55.4 3.4E+02 0.0073 30.3 24.4 41 199-240 117-157 (613)
372 TIGR03504 FimV_Cterm FimV C-te 55.3 27 0.0006 23.1 4.0 24 481-504 5-28 (44)
373 PF12968 DUF3856: Domain of Un 54.7 1.3E+02 0.0027 25.2 9.1 67 545-617 55-126 (144)
374 PF10366 Vps39_1: Vacuolar sor 54.4 1.2E+02 0.0026 24.8 8.7 26 268-293 42-67 (108)
375 COG5187 RPN7 26S proteasome re 53.8 2.2E+02 0.0048 27.8 12.4 23 546-568 116-138 (412)
376 KOG4077 Cytochrome c oxidase, 53.8 43 0.00094 28.0 5.6 43 529-571 68-110 (149)
377 COG4785 NlpI Lipoprotein NlpI, 52.8 2E+02 0.0043 26.9 17.2 29 511-539 238-266 (297)
378 PF14689 SPOB_a: Sensor_kinase 50.6 37 0.00081 24.4 4.5 30 474-503 22-51 (62)
379 PF11846 DUF3366: Domain of un 50.1 79 0.0017 29.0 7.8 29 622-650 140-168 (193)
380 COG5159 RPN6 26S proteasome re 49.4 2.6E+02 0.0057 27.3 16.6 123 272-394 10-149 (421)
381 PF11848 DUF3368: Domain of un 48.7 58 0.0013 22.0 4.9 35 202-236 11-45 (48)
382 PF14853 Fis1_TPR_C: Fis1 C-te 47.0 71 0.0015 22.2 5.2 37 596-634 6-42 (53)
383 PF10345 Cohesin_load: Cohesin 46.9 4.5E+02 0.0098 29.3 44.5 61 594-655 538-606 (608)
384 KOG2297 Predicted translation 46.7 3E+02 0.0065 27.2 18.0 22 475-496 321-342 (412)
385 TIGR02508 type_III_yscG type I 46.1 1.6E+02 0.0034 23.7 9.1 51 449-505 48-98 (115)
386 COG2976 Uncharacterized protei 45.5 2.5E+02 0.0053 25.8 15.1 22 518-539 167-188 (207)
387 PF11848 DUF3368: Domain of un 44.4 86 0.0019 21.2 5.2 34 601-634 12-45 (48)
388 KOG0686 COP9 signalosome, subu 44.2 3.8E+02 0.0083 27.7 15.5 29 474-504 305-333 (466)
389 PF09986 DUF2225: Uncharacteri 43.9 2.8E+02 0.006 26.0 12.6 97 521-621 88-195 (214)
390 smart00777 Mad3_BUB1_I Mad3/BU 43.8 1.1E+02 0.0025 25.7 6.9 73 571-651 48-124 (125)
391 PF10475 DUF2450: Protein of u 43.4 2.7E+02 0.0059 27.5 10.9 111 447-568 105-220 (291)
392 KOG2908 26S proteasome regulat 42.8 3.6E+02 0.0078 27.1 10.9 62 310-371 85-156 (380)
393 PF00244 14-3-3: 14-3-3 protei 42.4 1.9E+02 0.0042 27.6 9.3 58 375-432 6-64 (236)
394 PF14689 SPOB_a: Sensor_kinase 41.5 59 0.0013 23.4 4.3 23 596-618 28-50 (62)
395 KOG0991 Replication factor C, 41.4 3.2E+02 0.0069 26.0 13.4 47 588-636 236-282 (333)
396 PRK10564 maltose regulon perip 41.3 66 0.0014 31.6 5.8 47 587-633 252-299 (303)
397 COG2909 MalT ATP-dependent tra 40.7 6.2E+02 0.013 29.1 35.8 88 381-468 426-525 (894)
398 PF00244 14-3-3: 14-3-3 protei 40.5 3.3E+02 0.0072 25.9 10.7 57 410-466 6-63 (236)
399 PF07575 Nucleopor_Nup85: Nup8 40.3 1.1E+02 0.0024 33.8 8.2 23 86-108 153-175 (566)
400 PRK10564 maltose regulon perip 40.3 49 0.0011 32.4 4.8 38 194-231 258-295 (303)
401 KOG4507 Uncharacterized conser 40.2 2.5E+02 0.0054 30.4 10.0 151 298-451 569-721 (886)
402 PF07720 TPR_3: Tetratricopept 40.1 91 0.002 19.6 4.4 27 629-655 4-32 (36)
403 KOG0686 COP9 signalosome, subu 39.8 4.5E+02 0.0097 27.2 15.2 93 266-360 151-254 (466)
404 PF09454 Vps23_core: Vps23 cor 39.7 63 0.0014 23.6 4.2 51 588-639 5-55 (65)
405 PF09986 DUF2225: Uncharacteri 39.5 3.3E+02 0.0071 25.5 10.2 17 551-567 171-187 (214)
406 KOG4521 Nuclear pore complex, 39.5 7.3E+02 0.016 29.6 15.6 180 199-395 926-1127(1480)
407 PF11663 Toxin_YhaV: Toxin wit 39.3 28 0.00061 29.4 2.6 33 601-635 105-137 (140)
408 KOG0890 Protein kinase of the 38.6 1E+03 0.022 31.0 28.1 152 270-429 1388-1542(2382)
409 PF11838 ERAP1_C: ERAP1-like C 37.3 4.3E+02 0.0093 26.3 21.3 30 404-433 200-229 (324)
410 PF07575 Nucleopor_Nup85: Nup8 36.2 1.4E+02 0.003 33.0 8.3 25 193-218 149-173 (566)
411 PF11663 Toxin_YhaV: Toxin wit 36.1 37 0.00081 28.7 2.8 30 488-519 108-137 (140)
412 KOG2659 LisH motif-containing 34.6 4E+02 0.0087 25.1 9.9 66 261-328 22-92 (228)
413 COG5108 RPO41 Mitochondrial DN 34.5 2.4E+02 0.0052 31.0 9.0 48 480-527 33-82 (1117)
414 COG0819 TenA Putative transcri 34.4 4E+02 0.0086 25.1 10.1 105 538-643 102-207 (218)
415 KOG3807 Predicted membrane pro 34.1 4.1E+02 0.0089 26.5 9.8 119 281-410 232-351 (556)
416 PF11846 DUF3366: Domain of un 34.1 2E+02 0.0044 26.2 7.9 30 333-362 142-171 (193)
417 PF09670 Cas_Cas02710: CRISPR- 34.0 5.5E+02 0.012 26.6 13.0 52 486-538 142-197 (379)
418 PF12968 DUF3856: Domain of Un 33.9 2.8E+02 0.0061 23.2 7.4 73 192-291 54-126 (144)
419 PLN03025 replication factor C 33.5 5E+02 0.011 26.0 13.3 46 589-636 223-268 (319)
420 PF11768 DUF3312: Protein of u 32.7 5.5E+02 0.012 27.8 11.3 24 374-397 412-435 (545)
421 PF09670 Cas_Cas02710: CRISPR- 32.7 5.8E+02 0.013 26.4 12.1 58 200-258 138-197 (379)
422 KOG1464 COP9 signalosome, subu 32.5 4.7E+02 0.01 25.3 22.6 156 312-467 39-218 (440)
423 PF02847 MA3: MA3 domain; Int 32.2 2E+02 0.0043 23.4 6.8 24 269-292 6-29 (113)
424 PRK10941 hypothetical protein; 32.0 4.9E+02 0.011 25.4 11.2 60 479-539 185-244 (269)
425 COG0735 Fur Fe2+/Zn2+ uptake r 31.7 2.2E+02 0.0047 24.7 7.1 62 357-419 8-69 (145)
426 COG0735 Fur Fe2+/Zn2+ uptake r 31.0 2.8E+02 0.0061 24.0 7.7 59 465-524 11-69 (145)
427 PF04910 Tcf25: Transcriptiona 30.8 6E+02 0.013 26.1 22.9 124 186-328 33-167 (360)
428 COG5108 RPO41 Mitochondrial DN 30.6 3.2E+02 0.0069 30.1 9.1 91 270-363 33-131 (1117)
429 KOG0403 Neoplastic transformat 30.3 6.6E+02 0.014 26.4 28.3 56 594-650 512-567 (645)
430 PF09454 Vps23_core: Vps23 cor 29.8 97 0.0021 22.6 3.8 49 473-522 6-54 (65)
431 cd00280 TRFH Telomeric Repeat 29.6 3.7E+02 0.0081 24.4 8.0 23 341-363 117-139 (200)
432 PRK15180 Vi polysaccharide bio 28.5 7.3E+02 0.016 26.3 16.4 119 347-469 301-420 (831)
433 PF11768 DUF3312: Protein of u 28.1 6.1E+02 0.013 27.4 10.7 21 306-326 414-434 (545)
434 PF09477 Type_III_YscG: Bacter 28.1 3.4E+02 0.0073 22.2 8.8 32 472-505 68-99 (116)
435 PRK10941 hypothetical protein; 27.8 5.8E+02 0.013 24.9 11.3 60 269-329 185-244 (269)
436 PF10255 Paf67: RNA polymerase 27.8 2.1E+02 0.0045 29.8 7.2 68 546-618 123-191 (404)
437 KOG1114 Tripeptidyl peptidase 27.6 1E+03 0.023 27.8 15.4 66 577-642 1217-1283(1304)
438 PF04190 DUF410: Protein of un 27.2 5.8E+02 0.013 24.7 20.3 102 277-393 2-113 (260)
439 PF15297 CKAP2_C: Cytoskeleton 26.8 5.5E+02 0.012 26.0 9.5 79 561-641 106-190 (353)
440 PRK14962 DNA polymerase III su 26.8 8.1E+02 0.018 26.3 14.6 47 593-640 246-292 (472)
441 PF11817 Foie-gras_1: Foie gra 26.8 3E+02 0.0065 26.4 8.0 22 375-396 183-204 (247)
442 KOG2500 Uncharacterized conser 26.5 91 0.002 28.8 3.8 8 3-10 186-193 (253)
443 KOG4567 GTPase-activating prot 25.9 3.5E+02 0.0077 26.8 7.8 58 495-557 263-320 (370)
444 PF14853 Fis1_TPR_C: Fis1 C-te 25.7 2.3E+02 0.0051 19.6 6.4 32 197-230 5-36 (53)
445 PF12862 Apc5: Anaphase-promot 25.5 3.3E+02 0.0072 21.3 8.1 57 556-619 9-69 (94)
446 KOG2582 COP9 signalosome, subu 24.4 7.7E+02 0.017 25.2 14.1 18 416-433 194-211 (422)
447 PF12862 Apc5: Anaphase-promot 24.4 3.5E+02 0.0076 21.2 7.6 20 550-569 46-65 (94)
448 KOG2034 Vacuolar sorting prote 24.3 1.1E+03 0.025 27.1 29.7 51 271-327 364-416 (911)
449 COG4734 ArdA Antirestriction p 24.3 31 0.00066 30.0 0.5 12 10-21 40-51 (193)
450 PF12796 Ank_2: Ankyrin repeat 24.1 1.4E+02 0.0031 22.7 4.4 6 361-366 78-83 (89)
451 PF11817 Foie-gras_1: Foie gra 24.0 3.4E+02 0.0074 26.0 7.8 19 448-466 186-204 (247)
452 KOG1586 Protein required for f 23.8 6.4E+02 0.014 24.0 21.0 19 521-539 165-183 (288)
453 PF05944 Phage_term_smal: Phag 23.8 2.8E+02 0.006 23.7 6.1 34 589-623 47-80 (132)
454 KOG4567 GTPase-activating prot 23.6 4.4E+02 0.0095 26.2 7.9 72 320-396 263-344 (370)
455 PRK13800 putative oxidoreducta 23.4 1.3E+03 0.027 27.3 28.9 244 297-569 632-876 (897)
456 KOG3364 Membrane protein invol 23.3 4.9E+02 0.011 22.4 9.5 67 298-364 30-100 (149)
457 KOG0687 26S proteasome regulat 23.2 7.8E+02 0.017 24.8 14.2 36 477-512 106-145 (393)
458 COG2178 Predicted RNA-binding 23.2 5.9E+02 0.013 23.4 10.7 109 492-619 20-149 (204)
459 KOG3364 Membrane protein invol 23.0 4.9E+02 0.011 22.4 9.5 74 542-625 29-103 (149)
460 KOG2297 Predicted translation 22.9 7.6E+02 0.016 24.5 17.9 17 547-563 323-339 (412)
461 PF04090 RNA_pol_I_TF: RNA pol 22.8 4.7E+02 0.01 24.2 7.7 60 266-326 42-102 (199)
462 PRK11639 zinc uptake transcrip 22.8 4.5E+02 0.0098 23.5 7.7 59 467-526 18-76 (169)
463 PF10255 Paf67: RNA polymerase 22.5 9E+02 0.02 25.3 11.5 62 266-327 123-191 (404)
464 PF09868 DUF2095: Uncharacteri 21.9 3.3E+02 0.0073 22.4 5.7 24 447-470 68-91 (128)
465 PRK09857 putative transposase; 21.5 7.3E+02 0.016 24.6 9.6 61 445-506 211-271 (292)
466 PRK09462 fur ferric uptake reg 21.3 4.3E+02 0.0094 22.9 7.2 62 581-643 7-69 (148)
467 PRK11639 zinc uptake transcrip 21.3 4E+02 0.0087 23.8 7.1 44 376-419 31-74 (169)
468 PRK12356 glutaminase; Reviewed 21.3 5.3E+02 0.011 25.9 8.3 152 470-648 93-253 (319)
469 PF02847 MA3: MA3 domain; Int 21.0 2.7E+02 0.0059 22.5 5.7 24 197-220 6-29 (113)
470 KOG4521 Nuclear pore complex, 20.6 1.5E+03 0.033 27.2 16.9 135 477-613 985-1124(1480)
471 PF09868 DUF2095: Uncharacteri 20.5 3.9E+02 0.0084 22.0 5.8 31 481-512 67-97 (128)
472 PF03745 DUF309: Domain of unk 20.4 3.4E+02 0.0073 19.5 5.6 16 277-292 11-26 (62)
473 PHA03100 ankyrin repeat protei 20.3 7.9E+02 0.017 26.1 10.6 11 342-352 180-190 (480)
474 cd08819 CARD_MDA5_2 Caspase ac 20.2 4.3E+02 0.0093 20.7 7.7 67 493-565 20-86 (88)
475 KOG4642 Chaperone-dependent E3 20.1 7.8E+02 0.017 23.6 11.7 115 449-567 19-139 (284)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-69 Score=608.28 Aligned_cols=530 Identities=18% Similarity=0.318 Sum_probs=493.5
Q ss_pred ChhhHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hCCCCCCHHHHHHHHHHH
Q 006012 125 PAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISAC 203 (664)
Q Consensus 125 ~~~~~~~~l~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~li~~~ 203 (664)
+.+.+..++..+| +.|+++.|.++|++|.+.|..+.+...++.++..|.+.|.+.+|+.+ ..+..||..+|+.||.+|
T Consensus 369 ~~~~~~~~y~~l~-r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 369 KSPEYIDAYNRLL-RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CchHHHHHHHHHH-HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4466777777777 56899999999999999997667778889999999999999999988 555669999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012 204 ARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASK 283 (664)
Q Consensus 204 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~ 283 (664)
++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++. +.++|++|.+.|+.||..+||.+|.+|++.|++++
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~--A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA--MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 9999999999999999999999999999999999999999855 56999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012 284 AMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKE--SGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEM 361 (664)
Q Consensus 284 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 361 (664)
|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.||.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 678999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006012 362 ERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTH 441 (664)
Q Consensus 362 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 441 (664)
.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG 521 (664)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 521 (664)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHh--------hhHHHHHHHHHHHHHCCCCC
Q 006012 522 EQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYG----QSGRFDDAIECLE--------GLSDQAVNAFRVMRTDGLKP 589 (664)
Q Consensus 522 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~--------~~~~~a~~~~~~m~~~g~~p 589 (664)
+.|++++|.+++.+|.+.|+.||..+|++++..|. ++++..++...|+ +..++|..+|++|.+.|+.|
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 99999999999999999999999999999997654 3333333333232 34578999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHhhhhh
Q 006012 590 SNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFFNIYKMLS 659 (664)
Q Consensus 590 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~~~~~~~~~ 659 (664)
|..||+.++.++++.+..+.+..+++.|...+..|+..+|++|++++.+. .++|+.+++.+...+..+
T Consensus 846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCC
Confidence 99999999998889999999999999998888999999999999998543 368999999888877644
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.7e-70 Score=623.48 Aligned_cols=553 Identities=18% Similarity=0.259 Sum_probs=456.7
Q ss_pred ccCCccchhhHHHhhcCCCccchhhccCCCCchhhHHHHHHhhhcCCChhhHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Q 006012 78 QKQRYDFTPLLNFLSENSNSESASALASSPSSLNRVEFKLAESYRAVPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHN 157 (664)
Q Consensus 78 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~a~~~~~~~~~~~ 157 (664)
.++..+++..+..++..|..++|..+.. ++.+.+.......+.. +...|...+..+.|.++|..+.+.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~----------~m~~~g~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~ 116 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLE----------SMQELRVPVDEDAYVA-LFRLCEWKRAVEEGSRVCSRALSSH 116 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHH----------HHHhcCCCCChhHHHH-HHHHHhhCCCHHHHHHHHHHHHHcC
Confidence 4455667788999999999877743322 2222221222233344 4456778888999999999999988
Q ss_pred CCCchHHHHHHHHHHHcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006012 158 LCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQ 236 (664)
Q Consensus 158 ~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 236 (664)
. ..+..++|.|+.+|+++|++++|+.+ ..+.++|..+||+||.+|++.|++++|+++|++|.+.|+.||.+||+.+++
T Consensus 117 ~-~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~ 195 (857)
T PLN03077 117 P-SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195 (857)
T ss_pred C-CCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 5 45578999999999999999999998 777889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 006012 237 SLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRT 316 (664)
Q Consensus 237 ~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 316 (664)
+|++.++.. .+++++..+.+.|+.+|..++|+||.+|+++|++++|.++|++|. .||..+||++|.+|++.|+.
T Consensus 196 ~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~ 269 (857)
T PLN03077 196 TCGGIPDLA--RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGEC 269 (857)
T ss_pred HhCCccchh--hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCH
Confidence 999888774 456899999999999999999999999999999999999998886 47888888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012 317 IEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEM 396 (664)
Q Consensus 317 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 396 (664)
++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|
T Consensus 270 ~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 349 (857)
T PLN03077 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 006012 397 EVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTI 476 (664)
Q Consensus 397 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 476 (664)
. .||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.++..
T Consensus 350 ~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 350 E----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred C----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 5 467777888888888888888888888888777777888888777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC------------------------------CCCCCHHHHHHHHHHHHhcCCH
Q 006012 477 TWNTLIDCHFKCGRYDRAEELFEEMQER------------------------------GYFPCTTTYNIMINLLGEQERW 526 (664)
Q Consensus 477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------~~~p~~~t~~~ll~~~~~~g~~ 526 (664)
+||.||.+|+++|++++|.++|++|.+. ++.||..||+.++.+|++.|..
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchH
Confidence 7777777777777777777766665432 3456666666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh-------------------hhHHHHHHHHHHHHHCCC
Q 006012 527 EDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE-------------------GLSDQAVNAFRVMRTDGL 587 (664)
Q Consensus 527 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-------------------~~~~~a~~~~~~m~~~g~ 587 (664)
+.+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|+ |..++|+++|++|.+.|+
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 6666666666666666666677778888899999999988765 777899999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006012 588 KPSNLALNSLINAFGEDQRDAEAFAVLQYMK-ENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFF 652 (664)
Q Consensus 588 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~~ 652 (664)
.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|++++++|.+.|++++|.++++.+
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 9999999999999999999999999999999 6899999999999999999999999999999865
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-66 Score=594.37 Aligned_cols=494 Identities=17% Similarity=0.231 Sum_probs=453.1
Q ss_pred hhhHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHH
Q 006012 126 APLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACA 204 (664)
Q Consensus 126 ~~~~~~~l~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~li~~~~ 204 (664)
+......+...|...+++..+.++|..+.+.|. .++..++|.|+.+|+++|++++|..+ ..+..+|.++||+||.+|+
T Consensus 186 d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~ 264 (857)
T PLN03077 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF-ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYF 264 (857)
T ss_pred ChhHHHHHHHHhCCccchhhHHHHHHHHHHcCC-CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 333333334445566777778888888888775 45578899999999999999999998 6777899999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006012 205 RNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKA 284 (664)
Q Consensus 205 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A 284 (664)
+.|++++|+++|++|.+.|+.||.+||+.++.+|++.|+.+ .+++++..|.+.|+.||..+||.||.+|++.|++++|
T Consensus 265 ~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~--~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 342 (857)
T PLN03077 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER--LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH--HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999884 4679999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 285 MRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERS 364 (664)
Q Consensus 285 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 364 (664)
.++|++|. .||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.
T Consensus 343 ~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~ 418 (857)
T PLN03077 343 EKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418 (857)
T ss_pred HHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 99999996 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012 365 GVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYN 444 (664)
Q Consensus 365 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 444 (664)
|+.|+..+|++||++|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+
T Consensus 419 g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~ 493 (857)
T PLN03077 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLI 493 (857)
T ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHH
Confidence 999999999999999999999999999999996 46888999999999999999999999999986 5899999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012 445 VMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE 524 (664)
Q Consensus 445 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 524 (664)
.++.+|++.|+++.+.+++..+.+.|+.++..++|+||++|+++|++++|+++|+++ .||..+||+++.+|++.|
T Consensus 494 ~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G 568 (857)
T PLN03077 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHG 568 (857)
T ss_pred HHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999987 578999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHh
Q 006012 525 RWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMR-TDGLKPSNLALNSLINAFGE 603 (664)
Q Consensus 525 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~ 603 (664)
+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++ |+.|. +.|+.|+..+|++++++|++
T Consensus 569 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~-----------f~~M~~~~gi~P~~~~y~~lv~~l~r 637 (857)
T PLN03077 569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY-----------FHSMEEKYSITPNLKHYACVVDLLGR 637 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH-----------HHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988887776 67787 56899999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 604 DQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 604 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
.|++++|.+++++| ++.||..+|.+|+.+|...|+.+.++.+.+
T Consensus 638 ~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 638 AGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred CCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999999888 378999999999988887777777666554
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-65 Score=574.04 Aligned_cols=476 Identities=19% Similarity=0.325 Sum_probs=448.6
Q ss_pred chHHHHHHHHHHHcccCCHHHHHHh-hC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 006012 161 SYELLYSILIHALGRSEKLYEAFLL-SQ-----RQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLV 234 (664)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~A~~~-~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 234 (664)
.+...|..++..|++.|++.+|+.+ .. ..+++...++.++.+|.+.|.+++|+.+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 3456788888899999999999988 11 1345677888999999999999999999999974 999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006012 235 IQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG 314 (664)
Q Consensus 235 l~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 314 (664)
+.+|++.|+++. +.++|+.|.+.|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 444 L~a~~k~g~~e~--A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 444 MSVCASSQDIDG--ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHhCcCHHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 999999999855 569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006012 315 RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMER--SGVLPDEHTYSLLIDAYANAGRWESARIV 392 (664)
Q Consensus 315 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~l 392 (664)
++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 68899999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 006012 393 LKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE 472 (664)
Q Consensus 393 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 472 (664)
|++|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012 473 PDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLV 552 (664)
Q Consensus 473 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 552 (664)
|+..+|+.||.+|+++|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----------------------cCCHHH
Q 006012 553 DIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE-----------------------DQRDAE 609 (664)
Q Consensus 553 ~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-----------------------~g~~~~ 609 (664)
.+|++.|++++|.++ |.+|.+.|+.||..+|++++..|.+ .++.++
T Consensus 762 ~a~~k~G~le~A~~l-----------~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 762 VASERKDDADVGLDL-----------LSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred HHHHHCCCHHHHHHH-----------HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH
Confidence 999999999888776 7889999999999999999976542 134578
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006012 610 AFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFFN 653 (664)
Q Consensus 610 A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~~~ 653 (664)
|..+|++|++.|+.||..||..++.++++.+..+.+...++.+.
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 99999999999999999999999998889999998888887554
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.7e-61 Score=538.49 Aligned_cols=513 Identities=16% Similarity=0.248 Sum_probs=450.1
Q ss_pred cccCCccchhhHHHhhcCCCccchhhccCCCCchhhHHHHHHhhhcC-CChhhHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 006012 77 LQKQRYDFTPLLNFLSENSNSESASALASSPSSLNRVEFKLAESYRA-VPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQK 155 (664)
Q Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~a~~~~~~~~~ 155 (664)
...+...+...+..+...|..++|..+.. .+....+. .+...|..++. .|...++.+.|.++|..+.+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~----------~m~~~~~~~~~~~t~~~ll~-a~~~~~~~~~a~~l~~~m~~ 151 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFE----------ILEAGCPFTLPASTYDALVE-ACIALKSIRCVKAVYWHVES 151 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHH----------HHHhcCCCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHHHHH
Confidence 33455678889999999998877744322 22222222 22334555555 55577899999999999999
Q ss_pred cCCCCchHHHHHHHHHHHcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 006012 156 HNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLV 234 (664)
Q Consensus 156 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 234 (664)
.|. .++..+++.|+++|+++|++++|..+ ..+..+|.++||+||.+|++.|++++|+++|++|.+.|+.|+..+|+.+
T Consensus 152 ~g~-~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 230 (697)
T PLN03081 152 SGF-EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230 (697)
T ss_pred hCC-CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH
Confidence 996 45689999999999999999999998 6677899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006012 235 IQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG 314 (664)
Q Consensus 235 l~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 314 (664)
+.+|++.|.. ..+++++..+.+.|+.+|..+||+||++|+++|++++|.++|+.|. ++|.++||++|.+|++.|
T Consensus 231 l~a~~~~~~~--~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g 304 (697)
T PLN03081 231 LRASAGLGSA--RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHG 304 (697)
T ss_pred HHHHhcCCcH--HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCC
Confidence 9999999987 4567999999999999999999999999999999999999999996 479999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012 315 RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLK 394 (664)
Q Consensus 315 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 394 (664)
+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++||++|++.|++++|.++|+
T Consensus 305 ~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~ 384 (697)
T PLN03081 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384 (697)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-CCCCC
Q 006012 395 EMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLS-EGIEP 473 (664)
Q Consensus 395 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~ 473 (664)
+|. .+|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|
T Consensus 385 ~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p 460 (697)
T PLN03081 385 RMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460 (697)
T ss_pred hCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Confidence 996 4799999999999999999999999999999999999999999999999999999999999999986 69999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 006012 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP-NVVTYTTLV 552 (664)
Q Consensus 474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li 552 (664)
+..+|+.++++|++.|++++|.+++++| ++.|+..+|++++.+|+..|+++.|..+++++.+. .| +..+|..|+
T Consensus 461 ~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~ 535 (697)
T PLN03081 461 RAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLL 535 (697)
T ss_pred CccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHH
Confidence 9999999999999999999999999876 56899999999999999999999999999999764 45 467999999
Q ss_pred HHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHH-------HHHHhc----CCHHHHHHHHHHHHHC
Q 006012 553 DIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLI-------NAFGED----QRDAEAFAVLQYMKEN 620 (664)
Q Consensus 553 ~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li-------~~~~~~----g~~~~A~~~~~~m~~~ 620 (664)
++|++.|++++|.++ ++.|.+.|++... .+|..+. .+-..+ .-++...++..+|.+.
T Consensus 536 ~~y~~~G~~~~A~~v-----------~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~ 604 (697)
T PLN03081 536 NLYNSSGRQAEAAKV-----------VETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEY 604 (697)
T ss_pred HHHHhCCCHHHHHHH-----------HHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHc
Confidence 999999999998877 6788888876432 2332211 000011 1235566788889999
Q ss_pred CCCCCHH
Q 006012 621 GLKPDVV 627 (664)
Q Consensus 621 g~~p~~~ 627 (664)
|+.||..
T Consensus 605 gy~~~~~ 611 (697)
T PLN03081 605 GYVAEEN 611 (697)
T ss_pred CCCCCcc
Confidence 9999853
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.5e-60 Score=530.75 Aligned_cols=470 Identities=19% Similarity=0.249 Sum_probs=412.2
Q ss_pred hhHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 006012 127 PLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARN 206 (664)
Q Consensus 127 ~~~~~~l~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~ 206 (664)
..|..++..++ ..+++++|+++|.|+...+. ..+|..+|++++.+|++.
T Consensus 88 ~~~~~~i~~l~-~~g~~~~Al~~f~~m~~~~~------------------------------~~~~~~t~~~ll~a~~~~ 136 (697)
T PLN03081 88 VSLCSQIEKLV-ACGRHREALELFEILEAGCP------------------------------FTLPASTYDALVEACIAL 136 (697)
T ss_pred eeHHHHHHHHH-cCCCHHHHHHHHHHHHhcCC------------------------------CCCCHHHHHHHHHHHHhC
Confidence 35666666655 34566677777776654431 235777899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012 207 DDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMR 286 (664)
Q Consensus 207 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 286 (664)
++++.|.+++..|.+.|+.||..+|+.++..|++.|+++. |.++|++|. .||..+||.+|.+|++.|++++|++
T Consensus 137 ~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~--A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~ 210 (697)
T PLN03081 137 KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID--ARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFA 210 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHH--HHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999999999999999999999998854 568888886 4788999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006012 287 FLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGV 366 (664)
Q Consensus 287 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 366 (664)
+|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.|+.||..+||.||.+|++.|++++|.++|++|.+
T Consensus 211 lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--- 287 (697)
T PLN03081 211 LFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--- 287 (697)
T ss_pred HHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012 367 LPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVM 446 (664)
Q Consensus 367 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 446 (664)
+|.++||+||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|
T Consensus 288 -~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L 366 (697)
T PLN03081 288 -KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366 (697)
T ss_pred -CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006012 447 IDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERW 526 (664)
Q Consensus 447 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 526 (664)
+++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~ 442 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcH
Confidence 999999999999999999986 4788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012 527 EDVKRLLGNMRA-QGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQ 605 (664)
Q Consensus 527 ~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 605 (664)
++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++ + .+..|+..+|++|+.+|..+|
T Consensus 443 ~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~-----------~---~~~~p~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR-----------R---APFKPTVNMWAALLTACRIHK 508 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH-----------H---CCCCCCHHHHHHHHHHHHHcC
Confidence 999999999986 5899999999999999999999998877632 2 357899999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHhhh
Q 006012 606 RDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDKFHKVFSSYLFFNIYKM 657 (664)
Q Consensus 606 ~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~a~~~~g~~~~A~~~~~~~~~~~~ 657 (664)
+++.|..+++++.+ +.| +..+|..|++.|++.|++++|.++++.|...+.
T Consensus 509 ~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 509 NLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred CcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999998875 556 467899999999999999999999998876553
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-28 Score=287.80 Aligned_cols=496 Identities=13% Similarity=0.044 Sum_probs=294.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALN 214 (664)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 214 (664)
..++++.|..++..+.+.+ +.+...+..+...+...|++++|... ....+.+...+..++..+.+.|++++|+.
T Consensus 375 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 452 (899)
T TIGR02917 375 ALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALA 452 (899)
T ss_pred HCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 3344445555554444433 23333444444444444444444433 11112222333444444445555555555
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006012 215 LMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV 294 (664)
Q Consensus 215 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 294 (664)
+++++... .+.+..++..+...+...|+.+. +...|+.+.+.. +.+...+..+...+...|++++|.+.|+.+.+.
T Consensus 453 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~--A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 528 (899)
T TIGR02917 453 AAKKLEKK-QPDNASLHNLLGAIYLGKGDLAK--AREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI 528 (899)
T ss_pred HHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHH--HHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55554443 13344455555555555555533 335555554432 233445555555556666666666666655544
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012 295 GLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYS 374 (664)
Q Consensus 295 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 374 (664)
+ +.+..++..+...+.+.|+.++|...++++.+.+. .+...+..++..+.+.|++++|..+++.+.+.. ..+..+|.
T Consensus 529 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 605 (899)
T TIGR02917 529 D-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWL 605 (899)
T ss_pred C-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 3 33455555666666666666666666666555432 244555556666666666666666666665543 23555666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 006012 375 LLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYN 454 (664)
Q Consensus 375 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 454 (664)
.+...|.+.|++++|...|+++.+.. +.+...+..+..++.+.|++++|...++.+.+.. +.+..++..+...+...|
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 66666666666666666666665543 3345556666666666666666666666665543 334566666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006012 455 CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLG 534 (664)
Q Consensus 455 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 534 (664)
++++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.|+.+...+ |+..++..+..++.+.|++++|.+.+.
T Consensus 684 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 684 RTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred CHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666666666666554 3455556666666667777777777777766654 333555666666777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh-----------------------hhHHHHHHHHHHHHHCCCCCCH
Q 006012 535 NMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE-----------------------GLSDQAVNAFRVMRTDGLKPSN 591 (664)
Q Consensus 535 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-----------------------~~~~~a~~~~~~m~~~g~~p~~ 591 (664)
++.+.. ..+..++..+...|.+.|++++|.+.++ +. .+|+..++++.... .-+.
T Consensus 761 ~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~ 837 (899)
T TIGR02917 761 AWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIP 837 (899)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCc
Confidence 766653 2356666777777777777777776665 22 34566666665532 1234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006012 592 LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFF 652 (664)
Q Consensus 592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~~ 652 (664)
..+..+..++...|++++|.++++++++.+ +.+..++..++.++.+.|++++|.++++.+
T Consensus 838 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 838 AILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567788888899999999999999999865 338889999999999999999999988854
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.6e-28 Score=280.04 Aligned_cols=498 Identities=14% Similarity=0.083 Sum_probs=317.9
Q ss_pred HhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012 136 LCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEK 211 (664)
Q Consensus 136 l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~ 211 (664)
.+...++++.|...+..+.+.. |.+...+..+...+.+.|++++|... ....+.+...|+.+...+.+.|++++
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 381 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3445677777777777777665 44556666777777777777777665 33344556677777777777777777
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCC-------------------------------
Q 006012 212 ALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDK------------------------------- 260 (664)
Q Consensus 212 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~------------------------------- 260 (664)
|.+.|+++.+.+ +.+...+..+...+...|+.+.+ ...++.+.+..
T Consensus 382 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A--~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 458 (899)
T TIGR02917 382 AAEYLAKATELD-PENAAARTQLGISKLSQGDPSEA--IADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLE 458 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHH--HHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 777777776643 22334444555555555555332 23444333322
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 006012 261 --IELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAY 338 (664)
Q Consensus 261 --~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 338 (664)
.+.+..+++.+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.+. .+..++
T Consensus 459 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 536 (899)
T TIGR02917 459 KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAI 536 (899)
T ss_pred HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHH
Confidence 23345556666666666666666666666665533 33445555566666666666666666666655432 245566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 006012 339 NALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR 418 (664)
Q Consensus 339 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~ 418 (664)
..+...+.+.|+.++|..+++++.+.+. .+...+..++..|.+.|++++|..+++.+.... +.+...|..+..++...
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 6666666666666666666666655432 245556666666777777777777777666543 44566677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006012 419 GEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELF 498 (664)
Q Consensus 419 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 498 (664)
|++++|...++.+.+.. +.+...+..+...+.+.|++++|..+++++.+.. +.+..++..++..+...|++++|.+++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777766543 3455666667777777777777777777776543 334666777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh---------
Q 006012 499 EEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE--------- 569 (664)
Q Consensus 499 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------- 569 (664)
+.+.+.+ +.+...+..+...+...|++++|.+.+.++...+ |+..++..++.++.+.|++++|.+.++
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 769 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPND 769 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 7777665 4556667777777777777777777777777653 444666677777777777777776654
Q ss_pred --------------hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012 570 --------------GLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKA 635 (664)
Q Consensus 570 --------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a 635 (664)
|..++|...|+++.... ..+...++.+...+...|+ .+|+.+++++.+. .+-+..++..++.+
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~ 846 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWL 846 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHH
Confidence 44556667777766643 2345566777777777777 6677777777663 12345566667777
Q ss_pred HHhcCCHhHHHHHHH
Q 006012 636 LIRVDKFHKVFSSYL 650 (664)
Q Consensus 636 ~~~~g~~~~A~~~~~ 650 (664)
+.+.|++++|.+.|+
T Consensus 847 ~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 847 LVEKGEADRALPLLR 861 (899)
T ss_pred HHHcCCHHHHHHHHH
Confidence 777777777777776
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=5e-20 Score=216.60 Aligned_cols=501 Identities=14% Similarity=0.026 Sum_probs=268.6
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHH--------------
Q 006012 135 NLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTY-------------- 196 (664)
Q Consensus 135 ~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~-------------- 196 (664)
+++...++.+.|.+.+.++.... |.++.++..++..+.+.|+.++|... ....+.++..+
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchh
Confidence 34445566777777777776655 55666677777777777777777654 22333333322
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006012 197 --NALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLT-RTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIV 273 (664)
Q Consensus 197 --~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~ 273 (664)
..+...+.+.|++++|+..|+++.+.+ +|+...-........ ..|+. ..+...++.+.+.. +-+...+..+..
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~--~~A~~~L~~ll~~~-P~~~~~~~~LA~ 189 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQR--PEAINQLQRLNADY-PGNTGLRNTLAL 189 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccH--HHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 223345666777777777777776543 222211001111111 22443 23446666666543 345556666677
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCC------------------CCC-HHHH-------------------------------
Q 006012 274 GFAKAGDASKAMRFLGMAQGVGL------------------SPK-TATY------------------------------- 303 (664)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~g~------------------~~~-~~~~------------------------------- 303 (664)
.+...|+.++|++.++++.+... .+. ...+
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 77777777777777766543210 000 0000
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHH-----
Q 006012 304 ---AAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLP-DEHTYS----- 374 (664)
Q Consensus 304 ---~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~----- 374 (664)
......+...|++++|+..|++..+... -+...+..+...+.+.|++++|...|++..+..... +...|.
T Consensus 270 ~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 270 FRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 0112344556777777777777666432 256666677777777777777777777766543221 111111
Q ss_pred -------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-
Q 006012 375 -------LLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVM- 446 (664)
Q Consensus 375 -------~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l- 446 (664)
.....+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~ 426 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLA 426 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 12334556677777777777776654 3345556666677777777777777777766542 2222233222
Q ss_pred -----------------------------------------HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 447 -----------------------------------------IDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCH 485 (664)
Q Consensus 447 -----------------------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 485 (664)
...+...|++++|++.+++.++.. +-+...+..+...|
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 233445666777777777666553 22445556666667
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---------HHHHHHHHHHH
Q 006012 486 FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNV---------VTYTTLVDIYG 556 (664)
Q Consensus 486 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~---------~~~~~li~~~~ 556 (664)
.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++. ..+..+...+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 77777777777777766543 223333333333344455555555554443221111110 01112233444
Q ss_pred hcCChHHHHHHHh-------------------hhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006012 557 QSGRFDDAIECLE-------------------GLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQY 616 (664)
Q Consensus 557 ~~g~~~~A~~~~~-------------------~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 616 (664)
..|+.++|+.+++ +..++|+..|++.... .| +...+..++..|...|++++|++.++.
T Consensus 585 ~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 585 DSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555554443 3444555555555543 23 344555666666666666666666665
Q ss_pred HHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 617 MKENGLKP-DVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 617 m~~~g~~p-~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
..+ ..| +..++..+..++.+.|++++|.++|+
T Consensus 663 ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 663 LPA--TANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred Hhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 554 222 33445555566666666666666666
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=2.9e-19 Score=210.15 Aligned_cols=361 Identities=11% Similarity=0.054 Sum_probs=245.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHH------------
Q 006012 272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP-RTKAY------------ 338 (664)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~------------ 338 (664)
...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..... ....+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 445667788888888888888754 3467788888888888888888888888887653321 11111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH--------
Q 006012 339 NALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSR-------- 410 (664)
Q Consensus 339 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~-------- 410 (664)
......+.+.|++++|...++++.+.... +...+..+...|...|++++|++.|++..+... .+...+..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 12234566788888888888888876432 566777788888888888888888888876532 22222222
Q ss_pred ----------------------------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 006012 411 ----------------------------------ILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCL 456 (664)
Q Consensus 411 ----------------------------------ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 456 (664)
+...+...|++++|++.+++..+.. +-+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 2334556789999999999988764 34567778888899999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------------------------
Q 006012 457 HHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG------------------------------- 505 (664)
Q Consensus 457 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------------------------- 505 (664)
++|...++++.+.. +.+...+..+...+.+.|+.++|+..++.+....
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 99999999988753 2234444334444555666666666655443211
Q ss_pred --------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHH
Q 006012 506 --------YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVN 577 (664)
Q Consensus 506 --------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~ 577 (664)
.+.+...+..+...+.+.|++++|.+.+++..+.... +...+..++..|...|++++|++.
T Consensus 591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~---------- 659 (1157)
T PRK11447 591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQ---------- 659 (1157)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH----------
Confidence 1233344455555556666666666666666654322 455556666666666666666555
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 006012 578 AFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKENGL--KP---DVVTYTTLMKALIRVDKFHKVFSSYLF 651 (664)
Q Consensus 578 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~a~~~~g~~~~A~~~~~~ 651 (664)
++.... ..|+ ...+..+..++...|++++|.+++++++...- +| +...+..+...+.+.|+.++|.+.|+.
T Consensus 660 -l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 660 -LAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred -HHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444443 2343 45677788999999999999999999987421 22 235677788999999999999999983
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=2.3e-19 Score=179.16 Aligned_cols=441 Identities=16% Similarity=0.133 Sum_probs=305.2
Q ss_pred HHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 006012 166 YSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRT 241 (664)
Q Consensus 166 ~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 241 (664)
...|.+-..+.|++.+|.+. ....+.+....-.+-.++....++++....-....+.. +--..+|..+.+.+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 55667777788888888775 22223333344445566677777776665544444432 33456777778888888
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChHHHH
Q 006012 242 NKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTAT-YAAVITALSNSGRTIEAE 320 (664)
Q Consensus 242 g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~ 320 (664)
|++++++ .+|+.+++.. +..+..|-.+..++...|+.+.|.+.|.+..+. .|+... ...+...+-..|++++|.
T Consensus 130 g~~~~al--~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 130 GQLQDAL--ALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred chHHHHH--HHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 8775544 7777777654 335667777788888888888888888777764 455443 334555555678888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006012 321 AVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPD-EHTYSLLIDAYANAGRWESARIVLKEMEVS 399 (664)
Q Consensus 321 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 399 (664)
..|.+.++... -=...|..|...+-..|++..|++-|++..+. .|+ ...|-.|...|...+.+++|...|.+....
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 88877776422 12456777877888888888888888887765 333 456777778888888888888888777654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012 400 HAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWN 479 (664)
Q Consensus 400 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 479 (664)
. +.....+..+...|...|..+.|+..+++..+.. +.-...|+.|..++-..|++.+|...++..+... .......+
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 3 3345566777777888888888888888877653 2235678888888888888888888888877653 23456677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 006012 480 TLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN-VVTYTTLVDIYGQS 558 (664)
Q Consensus 480 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 558 (664)
.|...|...|.+++|..+|....+-. +--...++.|...|-++|++++|...+++.++ ++|+ ...|+.+...|-..
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence 78888888888888888888877653 23355677788888888888888888888876 5665 46777778888888
Q ss_pred CChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 006012 559 GRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV-VTYTTLMKAL 636 (664)
Q Consensus 559 g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~a~ 636 (664)
|+.+.|+..+. +... +.|.- ..++.|...|-..|+..+|++-+++.++ ++||. ..|..++.++
T Consensus 436 g~v~~A~q~y~-----------rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 436 GDVSAAIQCYT-----------RAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred hhHHHHHHHHH-----------HHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHH
Confidence 88877777643 2222 45553 4677888888888888888888888877 67764 4555555544
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=7.4e-17 Score=181.59 Aligned_cols=473 Identities=13% Similarity=0.021 Sum_probs=278.2
Q ss_pred HhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012 136 LCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEK 211 (664)
Q Consensus 136 l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~ 211 (664)
+....|+++.|+..|+.+++.. |.+..++..|...|.+.|+.++|... ....+.|...+..+ ..+ +++++
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~k 126 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVK 126 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChh
Confidence 3445589999999999999987 77789999999999999999999887 44455555555554 222 89999
Q ss_pred HHHHHHHHHHcCCCCC-hhhHHHHHHH--------HHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCH
Q 006012 212 ALNLMSKMRQDGYHCD-FINYSLVIQS--------LTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDV-IVGFAKAGDA 281 (664)
Q Consensus 212 A~~~~~~m~~~g~~p~-~~~~~~ll~~--------~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~l-i~~~~~~g~~ 281 (664)
|..+++++.... |+ ..++..+... |.+.+. +.+.++ .......|+..+.... ...|.+.|++
T Consensus 127 A~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eq-----Al~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 127 SVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPV-----ARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred HHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHH-----HHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 999999999874 44 3444444333 444322 234444 3333334445544444 8899999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006012 282 SKAMRFLGMAQGVGLSPKTATYAAVITALSN-SGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSE 360 (664)
Q Consensus 282 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 360 (664)
++|++.+.++.+.+ +.+..-...+..+|.+ .++ +++..+++. .++-+...+..+...|.+.|+.++|.+++++
T Consensus 199 ~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 199 SQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999998876 3345556666667777 366 667666543 2234677777888888888888888877777
Q ss_pred HHHCCCC-CCHHHH------------------------------HHHHHHHH----------------------------
Q 006012 361 MERSGVL-PDEHTY------------------------------SLLIDAYA---------------------------- 381 (664)
Q Consensus 361 m~~~g~~-~~~~~~------------------------------~~li~~~~---------------------------- 381 (664)
+...-.. |...+| -.++..+.
T Consensus 273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 352 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVS 352 (987)
T ss_pred CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhc
Confidence 6432111 111111 00011222
Q ss_pred -----------------------------------HcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcC-----
Q 006012 382 -----------------------------------NAGRWESARIVLKEMEVS--HAKPNSFIYSRILAGYRDRG----- 419 (664)
Q Consensus 382 -----------------------------------~~g~~~~A~~l~~~m~~~--~~~~~~~~~~~ll~~~~~~g----- 419 (664)
+.|+.++|.++|+..... ....+......++..|.+.+
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred cccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 234444444444444321 01112222223344443333
Q ss_pred ----------------------------------------------------------CHHHHHHHHHHHHHCCCCCCHH
Q 006012 420 ----------------------------------------------------------EWQRTFQVLKEMKSSGVEPDTH 441 (664)
Q Consensus 420 ----------------------------------------------------------~~~~a~~~~~~m~~~g~~~~~~ 441 (664)
+.++|...+.+.... .|+..
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~--~Pd~~ 510 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQR--QPDAW 510 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHh--CCchH
Confidence 333344433333322 13322
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG 521 (664)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 521 (664)
....+...+...|++++|...|+++... .|+...+..+...+.+.|++++|...+++..+.+ +.+...+..+...+.
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHH
Confidence 2222222333455555555555554332 2223333444444555555555555555555443 222222222222333
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 006012 522 EQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINA 600 (664)
Q Consensus 522 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~ 600 (664)
..|++++|...+++.++. .|+...+..+..++.+.|++++|+.. +++.... .|+ ...++.+..+
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~-----------l~~AL~l--~Pd~~~a~~nLG~a 652 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSD-----------LRAALEL--EPNNSNYQAALGYA 652 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHH-----------HHHHHHh--CCCCHHHHHHHHHH
Confidence 345555555555555543 33455555555556666665555554 4454443 454 4577888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 601 FGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 601 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
+...|++++|+..+++..+ ..| +...+..+..++.+.|++++|+..|+
T Consensus 653 L~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999988 344 56788899999999999999998888
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.6e-19 Score=189.35 Aligned_cols=302 Identities=19% Similarity=0.188 Sum_probs=236.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcC
Q 006012 273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR---TKAYNALLKGYVKMG 349 (664)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~~~~~g 349 (664)
..+...|++++|++.|+++.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++ ...+..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34567789999999999998864 34567888899999999999999999998887533222 256788888999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 006012 350 YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS----FIYSRILAGYRDRGEWQRTF 425 (664)
Q Consensus 350 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~ 425 (664)
++++|..+|+++.+.. ..+..++..++..|.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999998753 246778889999999999999999999998876533322 24556777888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006012 426 QVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG 505 (664)
Q Consensus 426 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (664)
..++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|.+.|++++|...++++.+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999988754 345667788888999999999999999998875422224567888899999999999999999988864
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHhhhHHHHHHHHHHH
Q 006012 506 YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQ---SGRFDDAIECLEGLSDQAVNAFRVM 582 (664)
Q Consensus 506 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~a~~~~~~m 582 (664)
|+...+..+...+.+.|++++|..++.++.+. .|+..+++.++..+.. .|+.++++.+ +++|
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~-----------~~~~ 344 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLL-----------LRDL 344 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHH-----------HHHH
Confidence 56667788889999999999999999988875 5888888888887775 4467666665 4555
Q ss_pred HHCCCCCCHH
Q 006012 583 RTDGLKPSNL 592 (664)
Q Consensus 583 ~~~g~~p~~~ 592 (664)
.+.++.|++.
T Consensus 345 ~~~~~~~~p~ 354 (389)
T PRK11788 345 VGEQLKRKPR 354 (389)
T ss_pred HHHHHhCCCC
Confidence 5554555544
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.8e-18 Score=172.83 Aligned_cols=437 Identities=14% Similarity=0.061 Sum_probs=345.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALN 214 (664)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 214 (664)
..|++..|.+.-..+-..+ +.+....-.+-.++.+..+++..... .+..+.-..+|..+.+.+-..|++++|+.
T Consensus 60 q~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~ 137 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALA 137 (966)
T ss_pred hccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHH
Confidence 5678888888877776655 33322333344566677777655443 33444456799999999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012 215 LMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLL-NDVIVGFAKAGDASKAMRFLGMAQG 293 (664)
Q Consensus 215 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~-~~li~~~~~~g~~~~A~~~~~~~~~ 293 (664)
.++.|.+.. +-....|.-+..++...|+...+ .+.|.+..+. .|+.... +.+....-..|++.+|...|-+..+
T Consensus 138 ~y~~aiel~-p~fida~inla~al~~~~~~~~a--~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 138 LYRAAIELK-PKFIDAYINLAAALVTQGDLELA--VQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHhcC-chhhHHHhhHHHHHHhcCCCccc--HHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 999999863 23456888888899999988654 4666666543 5555544 3444555567999999999998887
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006012 294 VGLSPK-TATYAAVITALSNSGRTIEAEAVFEELKESGLKPR-TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEH 371 (664)
Q Consensus 294 ~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 371 (664)
. .|. .+.|..|...+-..|+...|++.|++..+. .|+ ...|-.|...|...+.++.|...+.+...... ...+
T Consensus 213 ~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~ 287 (966)
T KOG4626|consen 213 T--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-NHAV 287 (966)
T ss_pred h--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-cchh
Confidence 5 454 678999999999999999999999999875 443 57888999999999999999999999887532 2577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 006012 372 TYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFG 451 (664)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 451 (664)
.+..+...|-.+|.+|-|+..|++..+.. +.-...|+.|..++-..|++.+|.+.+.+..... +......+.|...|.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 88889999999999999999999998764 3456789999999999999999999999988764 445678899999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012 452 KYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKR 531 (664)
Q Consensus 452 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 531 (664)
..|.+++|..+|....+-. +--...+|.|...|-+.|++++|+..+++.+.-. +.-...|+.+...|-..|+.+.|.+
T Consensus 366 E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred HhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcchHHHHhhhHHHHHH
Confidence 9999999999999988753 2235678999999999999999999999998864 2335689999999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC
Q 006012 532 LLGNMRAQGLLPN-VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQR 606 (664)
Q Consensus 532 ~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~ 606 (664)
.+.+.+.. .|. ....+.|...|-..|++.+|+..++ ...+ ++||. ..|..++.++.-..+
T Consensus 444 ~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~-----------~aLk--lkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 444 CYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYR-----------TALK--LKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred HHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHH-----------HHHc--cCCCCchhhhHHHHHHHHHhc
Confidence 99999985 444 5778899999999999999988754 2222 67875 467666665543333
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=3.2e-19 Score=187.02 Aligned_cols=304 Identities=15% Similarity=0.117 Sum_probs=250.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHH
Q 006012 306 VITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPD---EHTYSLLIDAYAN 382 (664)
Q Consensus 306 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~ 382 (664)
....+...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34456788999999999999998643 3567899999999999999999999999987643222 3567888999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHH
Q 006012 383 AGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPD----THFYNVMIDTFGKYNCLHH 458 (664)
Q Consensus 383 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~ 458 (664)
.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999998753 45678899999999999999999999999988653332 2245667778889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 459 AMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (664)
Q Consensus 459 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 538 (664)
|...++++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|...|++++|.+.++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 3456678888999999999999999999998865222246788899999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 006012 539 QGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE---DQRDAEAFAVLQ 615 (664)
Q Consensus 539 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~ 615 (664)
. .|+...+..++..+.+.|++++|..+++ ++.+ ..|+..++..++..+.. .|+.++++.+++
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~-----------~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLR-----------EQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHH-----------HHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 6 4666777889999999999999988754 3333 26899999988887775 568999999999
Q ss_pred HHHHCCCCCCHH
Q 006012 616 YMKENGLKPDVV 627 (664)
Q Consensus 616 ~m~~~g~~p~~~ 627 (664)
+|.+.++.|++.
T Consensus 343 ~~~~~~~~~~p~ 354 (389)
T PRK11788 343 DLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhCCCC
Confidence 999877777654
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=6.6e-17 Score=178.70 Aligned_cols=401 Identities=12% Similarity=0.020 Sum_probs=279.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006012 231 YSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITAL 310 (664)
Q Consensus 231 ~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 310 (664)
+...-..+.+.|+++.+ ...|+..+.. .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++
T Consensus 130 ~k~~G~~~~~~~~~~~A--i~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKA--IKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHcCCHHHH--HHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 44555566777777554 4777777654 4567778888888888888888888888888754 33567888888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-----------------
Q 006012 311 SNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY----------------- 373 (664)
Q Consensus 311 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~----------------- 373 (664)
...|++++|+..|......+...+.. ...++..+........+...++.-... .|.....
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPEN--LPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHccCCcchhhhh
Confidence 88888888888887665432221222 122222111111111121111110000 0000000
Q ss_pred ----------HHHHHHH------HHcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012 374 ----------SLLIDAY------ANAGRWESARIVLKEMEVSH--AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSG 435 (664)
Q Consensus 374 ----------~~li~~~------~~~g~~~~A~~l~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 435 (664)
..++..+ ...+++++|.+.|++....+ .+.....|..+...+...|++++|+..+++..+..
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 0001000 12367899999999998764 23345678888889999999999999999988763
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006012 436 VEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNI 515 (664)
Q Consensus 436 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 515 (664)
+.....|..+...+...|++++|...|+...+.. +.+...|..+...|...|++++|...|++.++.. +.+...+..
T Consensus 362 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~ 438 (615)
T TIGR00990 362 -PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQ 438 (615)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHH
Confidence 3346688888999999999999999999998764 3467889999999999999999999999999876 556778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH-HH
Q 006012 516 MINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL-AL 594 (664)
Q Consensus 516 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~ 594 (664)
+...+.+.|++++|...+++.++.. .-+...++.+...+...|++++|++.++.... +-.. ..+...+.. .+
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~----l~p~--~~~~~~~~~~l~ 511 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE----LEKE--TKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCCc--cccccccHHHHH
Confidence 8999999999999999999998753 23578899999999999999999988652221 1000 000111111 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 006012 595 NSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDKFHKVFSSYLF 651 (664)
Q Consensus 595 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~a~~~~g~~~~A~~~~~~ 651 (664)
+..+..+...|++++|.+++++..+. .| +...+..++.++.+.|++++|.+.|+.
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 22233344579999999999999884 45 456788999999999999999999984
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=4.9e-16 Score=171.82 Aligned_cols=399 Identities=13% Similarity=0.039 Sum_probs=291.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006012 195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVG 274 (664)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~ 274 (664)
.+..+...+.+.|++++|+..|++..+. .|+...|..+..++.+.|+++.++ ..+....+.. +.+...+..+..+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai--~~~~~al~l~-p~~~~a~~~~a~a 203 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVV--EDTTAALELD-PDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHH--HHHHHHHHcC-CCCHHHHHHHHHH
Confidence 5666778889999999999999998875 578888888888899999986654 7777777653 4567789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHH----------------
Q 006012 275 FAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLK--PRTK---------------- 336 (664)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p~~~---------------- 336 (664)
|...|++++|+..|..+...+- .+......++..+... .+........+.... |...
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence 9999999999999887765431 2222222222222211 111111111111000 0000
Q ss_pred --------------HHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 337 --------------AYNALLKG---YVKMGYLKDAEFVVSEMERSG-VLP-DEHTYSLLIDAYANAGRWESARIVLKEME 397 (664)
Q Consensus 337 --------------~~~~li~~---~~~~g~~~~a~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 397 (664)
.+..+... ....+++++|.+.|+...+.+ ..| +...|+.+...+...|++++|+..|++..
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00001000 012367899999999998764 223 45678888889999999999999999998
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012 398 VSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTIT 477 (664)
Q Consensus 398 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 477 (664)
... +.+...|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...|++.++.. +.+...
T Consensus 359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~ 435 (615)
T TIGR00990 359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFS 435 (615)
T ss_pred HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHH
Confidence 764 3346688889999999999999999999988764 4567899999999999999999999999999875 345777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHH
Q 006012 478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVV------TYTTL 551 (664)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~~~l 551 (664)
+..+...+.+.|++++|+..|++.++.. +.+...|+.+...+...|++++|.+.+++.+......+.. .++..
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 8888999999999999999999998864 5567889999999999999999999999998863321111 11222
Q ss_pred HHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 552 VDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMKEN 620 (664)
Q Consensus 552 i~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 620 (664)
+..+...|++++|.+++ .+.... .|+. ..+..+...+.+.|++++|+++|++..+.
T Consensus 515 ~~~~~~~~~~~eA~~~~-----------~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 515 LALFQWKQDFIEAENLC-----------EKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHhhhHHHHHHHH-----------HHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 22334457777777664 343332 3544 47889999999999999999999999873
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=1.8e-16 Score=174.76 Aligned_cols=324 Identities=10% Similarity=0.029 Sum_probs=144.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006012 232 SLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALS 311 (664)
Q Consensus 232 ~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 311 (664)
..++..+.+.|+.+.+ ..++..+.... +-+...+..++......|++++|.+.|+++.... +.+...+..+...+.
T Consensus 46 ~~~~~~~~~~g~~~~A--~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 46 ILFAIACLRKDETDVG--LTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHhcCCcchh--HHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3344444455554332 24444444332 2222333333344444555555555555555432 223444555555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012 312 NSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARI 391 (664)
Q Consensus 312 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 391 (664)
+.|++++|.+.|+++.+.. +.+...+..+...+...|+.++|...++.+...... +...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 5555555555555554431 113344444555555555555555555544433222 11222222 22444555555555
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHHHH
Q 006012 392 VLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHH----AMAAFDRML 467 (664)
Q Consensus 392 l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~ 467 (664)
.++.+......++...+..+...+.+.|++++|...++.+.... +.+...+..+...+...|++++ |...+++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 55554443222223333333444455555555555555544432 2234444445555555555443 455555544
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H
Q 006012 468 SEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNV-V 546 (664)
Q Consensus 468 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~ 546 (664)
+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.++++...+ |+. .
T Consensus 278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~ 353 (656)
T PRK15174 278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSK 353 (656)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchH
Confidence 432 2234444455555555555555555555554443 2233344444445555555555555555554432 221 2
Q ss_pred HHHHHHHHHHhcCChHHHHHH
Q 006012 547 TYTTLVDIYGQSGRFDDAIEC 567 (664)
Q Consensus 547 ~~~~li~~~~~~g~~~~A~~~ 567 (664)
.+..+..++...|+.++|+..
T Consensus 354 ~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHH
Confidence 222233444455555554444
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=1.2e-14 Score=163.92 Aligned_cols=476 Identities=11% Similarity=0.022 Sum_probs=328.3
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHH--------HcccCCHHHHHHhhCCCCC--CHHH-HHHHHHHHHHcCCH
Q 006012 141 SSIDLAYAVVSWLQKHNLCYSYELLYSILIHA--------LGRSEKLYEAFLLSQRQRL--TPLT-YNALISACARNDDL 209 (664)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~~~~~~A~~~~~~~~~--~~~~-~~~li~~~~~~g~~ 209 (664)
+....|..+++.+.+.. |.+..++..+... |.+.+...+++. .....+ ++.+ .-.+...|.+.|++
T Consensus 122 ~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred ccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 67778889999998887 6777777777776 888877777777 333333 3444 44448999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006012 210 EKALNLMSKMRQDGYHCDFINYSLVIQSLTR-TNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFL 288 (664)
Q Consensus 210 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~ 288 (664)
++|++++.++.+.+ +.+..-...+-.++.. .++ ..+..++.. .+..|...+..++..|.+.|+.++|.+++
T Consensus 199 ~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~---~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L 270 (987)
T PRK09782 199 SQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD---DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYL 270 (987)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH---HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999986 3334445555556665 354 223344332 33468889999999999999999999998
Q ss_pred HHHHhCCCC-CCHHHHH------------------------------HHHHHHHhcCChH--------------------
Q 006012 289 GMAQGVGLS-PKTATYA------------------------------AVITALSNSGRTI-------------------- 317 (664)
Q Consensus 289 ~~~~~~g~~-~~~~~~~------------------------------~li~~~~~~g~~~-------------------- 317 (664)
+++...... |...+|. .++..+.+.++++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 350 (987)
T PRK09782 271 IENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYA 350 (987)
T ss_pred HhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHh
Confidence 876543211 2222211 1122233333333
Q ss_pred -------------------------------------------HHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCC--
Q 006012 318 -------------------------------------------EAEAVFEELKES--GLKPRTKAYNALLKGYVKMGY-- 350 (664)
Q Consensus 318 -------------------------------------------~A~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~-- 350 (664)
+|.++|+..... ...++....+-|+..|.+.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred hccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 333333332220 011122233345555555544
Q ss_pred -HHHHHHH------------H----------HHHHHC-CC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006012 351 -LKDAEFV------------V----------SEMERS-GV-LP--DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKP 403 (664)
Q Consensus 351 -~~~a~~~------------~----------~~m~~~-g~-~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 403 (664)
..++..+ . +..... +. .+ +...|..+..++.. ++.++|...+.+..... |
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--P 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--C
Confidence 2222211 1 111100 11 12 45666667666665 78888888777776553 5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 404 NSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLID 483 (664)
Q Consensus 404 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 483 (664)
+......+...+...|++++|...|+.+... +|+...+..+...+.+.|+.++|...++...+.. +.+...+..+..
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~ 584 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHA 584 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 5555445556667899999999999997654 4555566777788899999999999999999865 223333334444
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006012 484 CHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDD 563 (664)
Q Consensus 484 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 563 (664)
.+.+.|++++|...+++..+.. |+...|..+..++.+.|+.++|...+++....... +...+..+..++...|++++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 4456699999999999999875 67889999999999999999999999999987533 67788889999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC
Q 006012 564 AIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV-VTYTTLMKALIRVDK 641 (664)
Q Consensus 564 A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~a~~~~g~ 641 (664)
|+..++ +..+ ..| +...+..+..++...|++++|+..+++..+ +.|+. .+.........+..+
T Consensus 662 Ai~~l~-----------~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~ 726 (987)
T PRK09782 662 SREMLE-----------RAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFN 726 (987)
T ss_pred HHHHHH-----------HHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHH
Confidence 988754 3332 245 456889999999999999999999999998 56654 677778888888888
Q ss_pred HhHHHHHHHH
Q 006012 642 FHKVFSSYLF 651 (664)
Q Consensus 642 ~~~A~~~~~~ 651 (664)
++.|.+.|+.
T Consensus 727 ~~~a~~~~~r 736 (987)
T PRK09782 727 FRRLHEEVGR 736 (987)
T ss_pred HHHHHHHHHH
Confidence 9999888873
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.9e-15 Score=166.58 Aligned_cols=336 Identities=10% Similarity=0.060 Sum_probs=272.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006012 193 PLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVI 272 (664)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li 272 (664)
..-...++..+.+.|++++|+.+++...... +-+...+..+..+....|+.+. +...++.+.... +.+...+..+.
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~--A~~~l~~~l~~~-P~~~~a~~~la 117 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA--VLQVVNKLLAVN-VCQPEDVLLVA 117 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH--HHHHHHHHHHhC-CCChHHHHHHH
Confidence 3445667788899999999999999998874 2233455555566777888855 558888888764 55677888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012 273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLK 352 (664)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 352 (664)
..+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|+++
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~ 194 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLP 194 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHH
Confidence 99999999999999999998753 446788999999999999999999999988775443 33344333 3478899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHH
Q 006012 353 DAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQR----TFQVL 428 (664)
Q Consensus 353 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~ 428 (664)
+|...++.+.+....++...+..+...+.+.|++++|+..+++..... +.+...+..+...+...|++++ |...|
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 999999998876544455566666788999999999999999998765 4567788889999999999986 89999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006012 429 KEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP 508 (664)
Q Consensus 429 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 508 (664)
+...+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+++.+.+ |
T Consensus 274 ~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P 349 (656)
T PRK15174 274 RHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--G 349 (656)
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--c
Confidence 9988764 4567889999999999999999999999999865 3456678888999999999999999999998874 4
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012 509 CT-TTYNIMINLLGEQERWEDVKRLLGNMRAQG 540 (664)
Q Consensus 509 ~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 540 (664)
+. ..+..+..++...|+.++|...+++..+..
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 43 344445678899999999999999998863
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=7.8e-15 Score=165.28 Aligned_cols=408 Identities=11% Similarity=0.062 Sum_probs=254.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 006012 199 LISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKA 278 (664)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~ 278 (664)
.+......|+.++|++++.+..... +.+...+..+..++...|+.+. +..+++...... +.+...+..+...+...
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~--A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQN--SLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 3444445555555555555554311 2223334444444555555432 234444444331 33344555666777778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012 279 GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVV 358 (664)
Q Consensus 279 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 358 (664)
|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.... +...+..+...+...+..+.|.+.+
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 88888888888877653 33455 777777888888888888888888775432 4555566777777778888888777
Q ss_pred HHHHHCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhc-CCCCCHH-HH----HHHHHHHHhc
Q 006012 359 SEMERSGVLPDE------HTYSLLIDAYA-----NAGRW---ESARIVLKEMEVS-HAKPNSF-IY----SRILAGYRDR 418 (664)
Q Consensus 359 ~~m~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~l~~~m~~~-~~~~~~~-~~----~~ll~~~~~~ 418 (664)
+.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+ ...+..+...
T Consensus 174 ~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 174 DDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 76553 1221 11112222221 12233 6777788877753 1122221 11 1113445677
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHH
Q 006012 419 GEWQRTFQVLKEMKSSGVE-PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEP---DTITWNTLIDCHFKCGRYDRA 494 (664)
Q Consensus 419 g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A 494 (664)
|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+.+.+..... .......+..++.+.|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 8888899988888876522 322 22234668888899999999988887643111 134456666678888999999
Q ss_pred HHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006012 495 EELFEEMQERGY-----------FPC---TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGR 560 (664)
Q Consensus 495 ~~~~~~m~~~~~-----------~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 560 (664)
..+++.+.+..- .|+ ...+..+...+...|+.++|++.++++..... -+...+..+...+...|+
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 999888876530 123 23455667778888999999999999887643 357788888888889998
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012 561 FDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLM 633 (664)
Q Consensus 561 ~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 633 (664)
+++|++.++ +... ..|+ ...+..++..+...|++++|..+++++++ ..|+......+-
T Consensus 409 ~~~A~~~l~-----------~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~ 467 (765)
T PRK10049 409 PRAAENELK-----------KAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLA 467 (765)
T ss_pred HHHHHHHHH-----------HHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 888887754 3332 3465 44666777788888999999999999988 456644333333
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=6e-15 Score=166.19 Aligned_cols=401 Identities=11% Similarity=0.067 Sum_probs=295.2
Q ss_pred ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006012 227 DFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAV 306 (664)
Q Consensus 227 ~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 306 (664)
+..-..-.+......|+.+++ ..++....... +.+...+..+...+.+.|++++|.++|++..+.. +.+...+..+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A--~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEV--ITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHH--HHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 333344445566677777554 47788776522 5667789999999999999999999999988753 4457778889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006012 307 ITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRW 386 (664)
Q Consensus 307 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 386 (664)
+..+...|++++|...++++.+... .+.. +..+...+...|+.++|...++++.+.... +...+..+...+...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence 9999999999999999999988632 3555 888899999999999999999999987544 566777788888899999
Q ss_pred HHHHHHHHHHHhcCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHH
Q 006012 387 ESARIVLKEMEVSHAKPNS------FIYSRILAGYR-----DRGEW---QRTFQVLKEMKSS-GVEPDTH-FY----NVM 446 (664)
Q Consensus 387 ~~A~~l~~~m~~~~~~~~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~m~~~-g~~~~~~-~~----~~l 446 (664)
++|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 999999886653 2221 11122222222 22234 7788888888754 2223221 11 111
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHh
Q 006012 447 IDTFGKYNCLHHAMAAFDRMLSEGIE-PDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP---CTTTYNIMINLLGE 522 (664)
Q Consensus 447 i~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~t~~~ll~~~~~ 522 (664)
+..+...|++++|+..|+.+.+.+.. |+. .-..+...|...|++++|+..|+++.+..... .......+..++..
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 33456779999999999999987532 332 22225778999999999999999988654111 13456667778899
Q ss_pred cCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCC
Q 006012 523 QERWEDVKRLLGNMRAQGL-----------LPN---VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLK 588 (664)
Q Consensus 523 ~g~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~ 588 (664)
.|++++|.++++++..... .|+ ...+..+...+...|++++|+++++ ++... .+
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~-----------~al~~-~P 390 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR-----------ELAYN-AP 390 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH-----------HHHHh-CC
Confidence 9999999999999987531 123 2355677888999999999988754 33332 12
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006012 589 PSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD-VVTYTTLMKALIRVDKFHKVFSSYLFF 652 (664)
Q Consensus 589 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~a~~~~g~~~~A~~~~~~~ 652 (664)
-+...+..+...+...|++++|++.+++.++ +.|+ ...+..++..+.+.|++++|.+.++.+
T Consensus 391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 391 GNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456889999999999999999999999998 4565 677778888999999999999999733
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.5e-14 Score=151.19 Aligned_cols=457 Identities=14% Similarity=0.097 Sum_probs=319.7
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCC---CCCHHHHHHHHHHHHHcCCHHHHH
Q 006012 141 SSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQ---RLTPLTYNALISACARNDDLEKAL 213 (664)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 213 (664)
.+...|..++..+-+.+ +.++.+.+.|.+.|.--|++..++.+ .... ..-..+|.-+.++|-..|++++|.
T Consensus 250 ~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred HHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 35677777887777665 56678888998888888888888776 1111 112246888888899999999999
Q ss_pred HHHHHHHHcCCCCChhhHH--HHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHH
Q 006012 214 NLMSKMRQDGYHCDFINYS--LVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAG----DASKAMRF 287 (664)
Q Consensus 214 ~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g----~~~~A~~~ 287 (664)
..|.+..+. .++.+++. -+.+.+.+.|+...+ ...|+.+.+.. +-+..+...|...|...+ ..++|..+
T Consensus 328 ~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s--~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~ 402 (1018)
T KOG2002|consen 328 KYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEES--KFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNV 402 (1018)
T ss_pred HHHHHHHcc--CCCCccccccchhHHHHHhchHHHH--HHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHH
Confidence 998877765 35554444 455666777776544 46677766543 445556666666666664 55677777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 288 LGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELK----ESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMER 363 (664)
Q Consensus 288 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 363 (664)
+.+..+.- +.|...|..+...+-...-+.. +.+|.... ..+..+.....|.+...+...|+++.|...|+....
T Consensus 403 l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~ 480 (1018)
T KOG2002|consen 403 LGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG 480 (1018)
T ss_pred HHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence 77766643 4567777777776665554444 66665543 345556778888899989999999999988888765
Q ss_pred C---CCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 364 S---GVLPD------EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS 434 (664)
Q Consensus 364 ~---g~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 434 (664)
. ...+| ..+-..+...+-..++.+.|.+.|..+.... +.-+..|-.++......+...+|...+++....
T Consensus 481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~ 559 (1018)
T KOG2002|consen 481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI 559 (1018)
T ss_pred hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence 4 11222 2233445666666778899999999888753 222334444443444556788888888887764
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHH
Q 006012 435 GVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG-IEPDTITWNTLIDCHFK------------CGRYDRAEELFEEM 501 (664)
Q Consensus 435 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m 501 (664)
. ..++..++.+...+.+...+..|.+-|....+.- ..+|+.+.-+|.+.|.+ .+..++|+++|.+.
T Consensus 560 d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 560 D-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred c-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 3 4566667777778888888888888777776542 23566666666665543 24577888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHH
Q 006012 502 QERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRV 581 (664)
Q Consensus 502 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~ 581 (664)
+... +-|...-|.+.-+++..|++.+|..+|.+..+... -...+|..+.++|..+|++..|+++|+..
T Consensus 639 L~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~---------- 706 (1018)
T KOG2002|consen 639 LRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENC---------- 706 (1018)
T ss_pred HhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHH----------
Confidence 8876 56777778888888999999999999999888643 25567888999999999999998887633
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 582 MRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKEN 620 (664)
Q Consensus 582 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 620 (664)
|....-.-+..+...|..++.+.|.+.+|.+.+......
T Consensus 707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 223333456778888999999999999999988888773
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=3.7e-14 Score=136.52 Aligned_cols=439 Identities=15% Similarity=0.192 Sum_probs=310.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHH-HHHHHHHHHhCCCCCCHHHHHHH
Q 006012 193 PLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSL-LQKLYKEIECDKIELDGQLLNDV 271 (664)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~-~~~l~~~~~~~~~~~d~~~~~~l 271 (664)
+.+=|.|+. ...+|.+.++.-+|++|...|+......-..+++..+-.+.-+.-. -++-|-.|...| +.+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 345555555 4578999999999999999998777776666666544333221111 133444444433 2222333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006012 272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYL 351 (664)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 351 (664)
+.|++.+ -+|+. .+.+..+|.++|.++|+--..+.|.++|++-.....+.+..+||.+|.+-.-...
T Consensus 191 -----K~G~vAd--L~~E~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~- 257 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFET-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG- 257 (625)
T ss_pred -----ccccHHH--HHHhh-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-
Confidence 3344433 23333 2557789999999999999999999999999888788899999999887554332
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHH
Q 006012 352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWES----ARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQR-TFQ 426 (664)
Q Consensus 352 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~ 426 (664)
.+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..
T Consensus 258 ---K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 258 ---KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred ---HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 6788899988899999999999999999998765 45778889999999999999999999988887644 444
Q ss_pred HHHHHHH----CCC----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCH
Q 006012 427 VLKEMKS----SGV----EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG----IEPD---TITWNTLIDCHFKCGRY 491 (664)
Q Consensus 427 ~~~~m~~----~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~ 491 (664)
++.++.. +.+ +.|...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 4444432 222 2355677788888889999999998887665321 2233 23466777888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ch-HHHHHHHh
Q 006012 492 DRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSG-RF-DDAIECLE 569 (664)
Q Consensus 492 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~-~~A~~~~~ 569 (664)
+.-++.|+.|.-+-+.|+..+...++++..-.+.++-..++|..++..|..-+.....-++..++... .. ..+.+-+.
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~ 494 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQ 494 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 99999999999988889999999999999999999999999999999886666666555666665544 11 12222222
Q ss_pred --------hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHH
Q 006012 570 --------GLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENG----LKPDVVTYTTLMKALI 637 (664)
Q Consensus 570 --------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~l~~a~~ 637 (664)
.+.+.-...-.+|+.... .....+...-.+.+.|+.++|.+++......+ ..|......-+++.-.
T Consensus 495 ~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~ 572 (625)
T KOG4422|consen 495 VAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAK 572 (625)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHH
Confidence 111111222334444333 34567777778899999999999999996533 2334445557788888
Q ss_pred hcCCHhHHHHHHHHHHH
Q 006012 638 RVDKFHKVFSSYLFFNI 654 (664)
Q Consensus 638 ~~g~~~~A~~~~~~~~~ 654 (664)
+.++...|..+++++..
T Consensus 573 ~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 573 VSNSPSQAIEVLQLASA 589 (625)
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 88889999998886643
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=1.7e-13 Score=151.63 Aligned_cols=421 Identities=12% Similarity=0.073 Sum_probs=191.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 006012 204 ARNDDLEKALNLMSKMRQDGYHCDF--INYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDA 281 (664)
Q Consensus 204 ~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~ 281 (664)
.+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++ +...++... ...+........+...|...|++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~--A~~~~eka~-~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQE--VIDVYERYQ-SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHH--HHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCH
Confidence 45555555555555554432 332 122 44444444444432 224444433 11112222233334455555666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012 282 SKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEM 361 (664)
Q Consensus 282 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 361 (664)
++|+++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++++
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 66666666655543 223444445555555556666666666555543 233333333333333334444455666665
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH------HHHHHHH-----HhcCC---HHHHHHH
Q 006012 362 ERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIY------SRILAGY-----RDRGE---WQRTFQV 427 (664)
Q Consensus 362 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~------~~ll~~~-----~~~g~---~~~a~~~ 427 (664)
.+.... +...+..+...+.+.|-...|.++.++-...- .+....+ ..+++.- ....+ .+.|+.-
T Consensus 196 l~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 196 VRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 555322 44455555555555555555555444322110 0000000 0000000 01111 2233333
Q ss_pred HHHHHHC-CCCCC-HHH----HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012 428 LKEMKSS-GVEPD-THF----YNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEM 501 (664)
Q Consensus 428 ~~~m~~~-g~~~~-~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 501 (664)
++.+... +-.|. ... ..-.+-++...|+..++++.|+.+...+.+....+--.+.++|...+++++|+.+++++
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3333321 11121 111 11223344555666666666666665554444445555666666666666666666665
Q ss_pred HHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CC--CH-HHHHHHHHHHHhcCChH
Q 006012 502 QERG-----YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGL-----------LP--NV-VTYTTLVDIYGQSGRFD 562 (664)
Q Consensus 502 ~~~~-----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-----------~p--~~-~~~~~li~~~~~~g~~~ 562 (664)
.... ..++......|..++...+++++|..+++++.+... .| |- ..+..++..+...|++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 4432 122333345556666666666666666666655211 11 11 22233444555566665
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 006012 563 DAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDK 641 (664)
Q Consensus 563 ~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~a~~~~g~ 641 (664)
+|++.++. +... -+-|......+.+.+...|++.+|.+.++.+.. +.| +..+....+.++...|+
T Consensus 434 ~Ae~~le~-----------l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e 499 (822)
T PRK14574 434 TAQKKLED-----------LSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQE 499 (822)
T ss_pred HHHHHHHH-----------HHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhh
Confidence 55555332 2221 122444555666666666666666666644443 233 33445555556666666
Q ss_pred HhHHHHHH
Q 006012 642 FHKVFSSY 649 (664)
Q Consensus 642 ~~~A~~~~ 649 (664)
+++|..+.
T Consensus 500 ~~~A~~~~ 507 (822)
T PRK14574 500 WHQMELLT 507 (822)
T ss_pred HHHHHHHH
Confidence 66665544
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=7.8e-14 Score=147.47 Aligned_cols=492 Identities=14% Similarity=0.091 Sum_probs=291.1
Q ss_pred hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006012 143 IDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-------SQRQRLTPLTYNALISACARNDDLEKALNL 215 (664)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 215 (664)
.+.|.+.|..+++.. |++....---.......+++..|+.. .....+| ....+..++.+.|+.+.|+..
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD--~rIgig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD--VRIGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC--ccchhhhHHHhccchhhHHHH
Confidence 578888888888876 55433332233344455677777765 1122233 233445677899999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCCChH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 216 MSKMRQDGYHCDFINYSLVIQSLTRTNKIDSS---LLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQ 292 (664)
Q Consensus 216 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~---~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~ 292 (664)
|.+..+.+ |+.+.-...+ +..+....+.. .+.+++......+ .-++.+.+.|.+.|.-.|++..+..+...+.
T Consensus 222 ~~ralqLd--p~~v~alv~L-~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 222 FERALQLD--PTCVSALVAL-GEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHhcC--hhhHHHHHHH-HHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 99998864 4322211111 11111111111 1223333333322 5678888999999999999999999998887
Q ss_pred hCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006012 293 GVGLS--PKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDE 370 (664)
Q Consensus 293 ~~g~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 370 (664)
..-.. .-..+|..+.++|-..|++++|...|.+..+....--...+..|.+.|.+.|+++.+...|+...+... -+.
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~ 376 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNY 376 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chH
Confidence 64311 124568889999999999999999998887753322244556788999999999999999999987642 356
Q ss_pred HHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHH
Q 006012 371 HTYSLLIDAYANAG----RWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEM----KSSGVEPDTHF 442 (664)
Q Consensus 371 ~~~~~li~~~~~~g----~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m----~~~g~~~~~~~ 442 (664)
.+...|...|+..+ ..+.|..++.+..+.. +.|...|-.+...+-...-+.. +.+|... ...+-.+....
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHH
Confidence 77777877787775 5567777777766543 4566777777666665544433 6555443 34455577788
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHH
Q 006012 443 YNVMIDTFGKYNCLHHAMAAFDRMLSE---GIEPDT------ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC-TTT 512 (664)
Q Consensus 443 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t 512 (664)
.|.+...+...|+++.|...|...... ...++. .+--.+...+-..++.+.|.+.|..+.+.. |+ +..
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ 532 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDA 532 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHH
Confidence 888888888888888888888877654 112222 122223444555667777777777776653 32 223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh-----------------------
Q 006012 513 YNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE----------------------- 569 (664)
Q Consensus 513 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----------------------- 569 (664)
|..++......++..+|...++.....+ .-++..++.+...+.+...+..|.+-|+
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~ 611 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI 611 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH
Confidence 3333322233455555666665555432 1133333333333333333222222111
Q ss_pred --------------hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012 570 --------------GLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKA 635 (664)
Q Consensus 570 --------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a 635 (664)
+..++|+..|.+..+... -|...-|.+.-+++..|++.+|..+|.+..+.. .-+..+|..+..+
T Consensus 612 ~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 612 QALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHC 689 (1018)
T ss_pred HHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHH
Confidence 333455555555554321 122333445555555566666666666555532 2233455555555
Q ss_pred HHhcCCHhHHHHHHH
Q 006012 636 LIRVDKFHKVFSSYL 650 (664)
Q Consensus 636 ~~~~g~~~~A~~~~~ 650 (664)
|..+|+|..|++.|+
T Consensus 690 ~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666555
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=6e-14 Score=135.08 Aligned_cols=347 Identities=15% Similarity=0.157 Sum_probs=252.6
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCH
Q 006012 186 SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDG 265 (664)
Q Consensus 186 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~ 265 (664)
.+..+.+..++.+||.++|+-...++|.+++++......+.+..+||.+|.+-.-.. .+++..+|...++.||.
T Consensus 200 ~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~------~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 200 FETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV------GKKLVAEMISQKMTPNL 273 (625)
T ss_pred HhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc------cHHHHHHHHHhhcCCch
Confidence 555677888999999999999999999999999998888899999999997654322 36899999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHH----cCCCC---
Q 006012 266 QLLNDVIVGFAKAGDASKA----MRFLGMAQGVGLSPKTATYAAVITALSNSGRTIE-AEAVFEELKE----SGLKP--- 333 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~~~~p--- 333 (664)
.++|+++.+..+.|+++.| ++++.+|++.|+.|...+|..+|..+++.++..+ |...+.++.. +..+|
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 9999999999999988765 5677899999999999999999999999988754 4444444432 22333
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH
Q 006012 334 -RTKAYNALLKGYVKMGYLKDAEFVVSEMERSG----VLPD---EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS 405 (664)
Q Consensus 334 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 405 (664)
|...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-.-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 55677888889999999999999887765321 1222 344667888889999999999999999887778899
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-C--------HH-----HHHHHH-------H
Q 006012 406 FIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYN-C--------LH-----HAMAAF-------D 464 (664)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~--------~~-----~A~~~~-------~ 464 (664)
.+...++++..-.+.++-.-+++.+++..|...+.....-++..+++.. . +. -|..++ .
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~ 513 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPI 513 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999988775544444444444444433 1 00 011111 1
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012 465 RMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG-YFP---CTTTYNIMINLLGEQERWEDVKRLLGNMRAQG 540 (664)
Q Consensus 465 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 540 (664)
+|.+. .......+.+...+.+.|+.++|.++|..+.+++ -.| ......-+++...+.+...+|...++-|...+
T Consensus 514 R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 514 RQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 22222 3344455666666777777777777777775442 222 22233345555556666677777777665543
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=2.7e-12 Score=142.17 Aligned_cols=428 Identities=11% Similarity=0.035 Sum_probs=276.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHcccCCHHHHHHhhC-CCC---CCHHHHHHHHHHHHHcCCHHHHH
Q 006012 139 SNSSIDLAYAVVSWLQKHNLCYSYE-LLYSILIHALGRSEKLYEAFLLSQ-RQR---LTPLTYNALISACARNDDLEKAL 213 (664)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~ 213 (664)
+.|+++.|+..+..+.+.. |.+. .++ .++..++..|+..+|+...+ -.. .+.....++...|...|++++|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred hCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6778888888888888776 4442 333 77777777888888877611 112 22333334455777778888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012 214 NLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQG 293 (664)
Q Consensus 214 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 293 (664)
++|+++.+.. |+. ...+..++..|...++.++|++.++.+..
T Consensus 123 ely~kaL~~d--P~n------------------------------------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~ 164 (822)
T PRK14574 123 ALWQSSLKKD--PTN------------------------------------PDLISGMIMTQADAGRGGVVLKQATELAE 164 (822)
T ss_pred HHHHHHHhhC--CCC------------------------------------HHHHHHHHHHHhhcCCHHHHHHHHHHhcc
Confidence 8888887753 322 22223445555666677777777776665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006012 294 VGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY 373 (664)
Q Consensus 294 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 373 (664)
. .|+...+..++..+...++..+|++.++++.+... -+...+..++..+.+.|-...|.++.++-... +.+...-+
T Consensus 165 ~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~ 240 (822)
T PRK14574 165 R--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQ 240 (822)
T ss_pred c--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHH
Confidence 4 34444444444444445555557777777766532 24556666666777777666666555543211 11111000
Q ss_pred ------HHHHHHH-----HHcCC---HHHHHHHHHHHHhc-CCCCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 374 ------SLLIDAY-----ANAGR---WESARIVLKEMEVS-HAKPN-SF----IYSRILAGYRDRGEWQRTFQVLKEMKS 433 (664)
Q Consensus 374 ------~~li~~~-----~~~g~---~~~A~~l~~~m~~~-~~~~~-~~----~~~~ll~~~~~~g~~~~a~~~~~~m~~ 433 (664)
..+++.- ....+ .+.|+.-++.+... +..|. .. ...-.+.++...+++.++++.++.|..
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 0011000 01122 34455555555442 11132 12 223446678888999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--
Q 006012 434 SGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG-----IEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY-- 506 (664)
Q Consensus 434 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-- 506 (664)
.+.+.-..+-..+.++|...++.++|+.++..+.... ..++......|.-+|...+++++|..+++.+.+...
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 8766556688889999999999999999999987642 123344457788899999999999999999987311
Q ss_pred ---------C--CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHH
Q 006012 507 ---------F--PCTT-TYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQ 574 (664)
Q Consensus 507 ---------~--p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 574 (664)
. ||-. .+..++..+...|++.+|++.++++....+ -|......+.+.+...|.+.+|++.++
T Consensus 401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k----- 474 (822)
T PRK14574 401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELK----- 474 (822)
T ss_pred EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH-----
Confidence 1 1222 234456778899999999999999988653 388899999999999999999888753
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006012 575 AVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVV 627 (664)
Q Consensus 575 a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 627 (664)
.... +.|+ ..+....+.++...|++++|..+.+...+ ..|+..
T Consensus 475 ------~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~ 518 (822)
T PRK14574 475 ------AVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDI 518 (822)
T ss_pred ------HHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCch
Confidence 2222 3455 44667788888889999999999998887 456544
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=5.2e-11 Score=120.93 Aligned_cols=487 Identities=11% Similarity=0.085 Sum_probs=269.5
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012 142 SIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMS 217 (664)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (664)
+...=.+++..++++- |.++.+|..-+.. ...++|+.+ .+-.+-+...| -+|++..-|+.|..+++
T Consensus 361 ~~~~K~RVlRKALe~i--P~sv~LWKaAVel----E~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvLN 430 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEHI--PRSVRLWKAAVEL----EEPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVLN 430 (913)
T ss_pred HHHHHHHHHHHHHHhC--CchHHHHHHHHhc----cChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHH
Confidence 3344455666666654 5555555544432 223334433 11122222223 23445555566666666
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHH----HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012 218 KMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKL----YKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQG 293 (664)
Q Consensus 218 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l----~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 293 (664)
+.++. ++-+...|.+....=-..|+. ..+.++ ...+...|+..+...|-.=...|-..|.+-.+..+......
T Consensus 431 kaRe~-iptd~~IWitaa~LEE~ngn~--~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avig 507 (913)
T KOG0495|consen 431 KAREI-IPTDREIWITAAKLEEANGNV--DMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIG 507 (913)
T ss_pred HHHhh-CCCChhHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Confidence 65553 444555554444433444433 222232 23344456666666666666666666666666666665555
Q ss_pred CCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006012 294 VGLSP--KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEH 371 (664)
Q Consensus 294 ~g~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 371 (664)
.|+.- -..||+.-.+.|.+.+-++-|..+|...++. .+-+...|......--..|..+....++++....-. -...
T Consensus 508 igvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~ 585 (913)
T KOG0495|consen 508 IGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEI 585 (913)
T ss_pred hccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchh
Confidence 55432 2345666666666666666666666665553 222445555555555555666666666666655422 2344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 006012 372 TYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFG 451 (664)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 451 (664)
.|-....-+-..|++..|..++.+..+.. +.+...|...+..-....+++.|..+|.+.... .|+..+|.--+...-
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLER 662 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHH
Confidence 45555555555666666666666665543 235555666666666666666666666665543 344455544444444
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012 452 KYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKR 531 (664)
Q Consensus 452 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 531 (664)
-.+..++|.+++++.++.- +.-...|-.+...+-+.++.+.|.+.|..-.+. ++-....|..+.+.=.+.|+.-.|..
T Consensus 663 ~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred HhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHH
Confidence 4555666666666655531 122345555555666666666666665554443 23344455555555555566666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHH----------HHHHH----------HHHHHHCCCCCCH
Q 006012 532 LLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSD----------QAVNA----------FRVMRTDGLKPSN 591 (664)
Q Consensus 532 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~a~~~----------~~~m~~~g~~p~~ 591 (664)
++++..-.+.+ +...|...|++=.+.|+.+.|..++...++ +|+.+ .+.|.+ +.-|.
T Consensus 741 ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk--ce~dp 817 (913)
T KOG0495|consen 741 ILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK--CEHDP 817 (913)
T ss_pred HHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh--ccCCc
Confidence 66666555443 555666666666666666666554431111 11111 112222 44567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006012 592 LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFF 652 (664)
Q Consensus 592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~~ 652 (664)
.....+...|....++++|.+.|.+.+..+ +.+..+|.-+..-+.+.|.-+.-.++|..+
T Consensus 818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 818 HVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 777788888888899999999999999843 334688888889899999877777777744
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=1.6e-13 Score=132.94 Aligned_cols=435 Identities=15% Similarity=0.128 Sum_probs=267.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCCCChHHHHHHHHHHHhC----CCCCCHHHHH
Q 006012 195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSL-VIQSLTRTNKIDSSLLQKLYKEIECD----KIELDGQLLN 269 (664)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~~~~~~l~~~~~~~----~~~~d~~~~~ 269 (664)
+...|..-|..+..+.+|+..|+-+.+....|+.-.+.. +-+.+.+...+. .+.+.|...... +-.....+.|
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fs--kaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFS--KAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHH--HHHHHHHHHHhhccccchhhHHHHHh
Confidence 444556667777888888888888887776676543321 112223333332 223444433322 2223345667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------------CHHH
Q 006012 270 DVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP------------RTKA 337 (664)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p------------~~~~ 337 (664)
.+...|.+.|+++.|+..|+...+. .|+..+-..|+-++..-|+.++..+.|.+|+.....| +...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 7777788999999999999987765 5888776667777777899999999999998643333 2222
Q ss_pred HHHHH-----HHHHhcC--CHHHHHHHHHHHHHCCCCCCHHH-------------H--------HHHHHHHHHcCCHHHH
Q 006012 338 YNALL-----KGYVKMG--YLKDAEFVVSEMERSGVLPDEHT-------------Y--------SLLIDAYANAGRWESA 389 (664)
Q Consensus 338 ~~~li-----~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~-------------~--------~~li~~~~~~g~~~~A 389 (664)
.|..| .-.-+.. +.++++-.--+++.--+.|+-.. + -.-..-|.+.|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 22222 1121111 11222222122221112222100 0 0112347789999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 006012 390 RIVLKEMEVSHAKPNSFIYSRILAGYR--DRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRML 467 (664)
Q Consensus 390 ~~l~~~m~~~~~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 467 (664)
+++++-+.+.+-+.-...-+.|-..+. ...++..|.+.-+...... +-+....+.-.......|++++|.+.|.+.+
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 999998876654433333333322222 2346777777766655432 2333333333333455799999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012 468 SEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVT 547 (664)
Q Consensus 468 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 547 (664)
...-......||.=+ .+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|.+++.+.... +..|+.+
T Consensus 518 ~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 518 NNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred cCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 654333333344322 466789999999999887543 2346778888889999999999999999887764 5568999
Q ss_pred HHHHHHHHHhcCChHHHHHHHh-----------------------hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-Hh
Q 006012 548 YTTLVDIYGQSGRFDDAIECLE-----------------------GLSDQAVNAFRVMRTDGLKPSNLALNSLINAF-GE 603 (664)
Q Consensus 548 ~~~li~~~~~~g~~~~A~~~~~-----------------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~ 603 (664)
.+.|.+.|-+.|+-..|.++.- ...++++.+|++..- +.|+..-|..|+..| .+
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 9999999999999999887643 344555555555443 456666666665443 34
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012 604 DQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVD 640 (664)
Q Consensus 604 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g 640 (664)
.|++.+|+.+++..... ++.|.....-|++.+...|
T Consensus 673 sgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred cccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 56666666666666543 5556666666666666555
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=4e-10 Score=119.16 Aligned_cols=487 Identities=13% Similarity=0.117 Sum_probs=288.9
Q ss_pred CCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006012 140 NSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNL 215 (664)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 215 (664)
.|+.++|..++..++++. |.+...|..|...|-..|+...+... ....+.|..-|-.+..-....|++++|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 489999999999999998 67788999999999999999988765 555677778999999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHH
Q 006012 216 MSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLND----VIVGFAKAGDASKAMRFLGMA 291 (664)
Q Consensus 216 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~----li~~~~~~g~~~~A~~~~~~~ 291 (664)
|.+..+.. +++...+---...|-+.|+... +..-|..+.....+.|..-+.. .++.|...++-+.|.+.++..
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~--Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKR--AMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHH--HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999874 3343333333445666776643 3355666655443333333333 345566677778888887776
Q ss_pred HhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH--------------------------HHHHHH
Q 006012 292 QGVG-LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAY--------------------------NALLKG 344 (664)
Q Consensus 292 ~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~--------------------------~~li~~ 344 (664)
...+ -..+...++.++..+.+...++.|......+......+|..-| .-++-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 6522 2334556778888888888888888877777652222222111 123333
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012 345 YVKMGYLKDAEFVVSEMERSG--VLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ 422 (664)
Q Consensus 345 ~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 422 (664)
+......+....+.....+.. +.-+...|.-+.++|.+.|++.+|+.+|..+.....--+...|..+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 444444444444555555544 233455666677777777777777777777776655555667777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006012 423 RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLS--------EGIEPDTITWNTLIDCHFKCGRYDRA 494 (664)
Q Consensus 423 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~~~~~~~~~li~~~~~~g~~~~A 494 (664)
.|.+.|+...... +.+...-..|-..+-+.|+.++|.+++..+.. .+..|+....-.....|.+.|+.++=
T Consensus 467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 7777777766543 33445555566666777777777777766442 12233333333444455555665554
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHH
Q 006012 495 EELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQ 574 (664)
Q Consensus 495 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 574 (664)
+.+...|+.... ...++ + .+-.++...- ....+..-...+...++.+-.+.++..........
T Consensus 546 i~t~~~Lv~~~~------~~~~~--f---~~~~k~r~~~--~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d---- 608 (895)
T KOG2076|consen 546 INTASTLVDDFL------KKRYI--F---PRNKKKRRRA--IAGTTSKRYSELLKQIIRAREKATDDNVMEKALSD---- 608 (895)
T ss_pred HHHHHHHHHHHH------HHHHh--c---chHHHHHHHh--hccccccccchhHHHHHHHHhccCchHHhhhcccc----
Confidence 444444433210 00000 0 0000000000 00001122233334444444444443333222110
Q ss_pred HHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCCHhHHHH
Q 006012 575 AVNAFRVMRTDGLKPSNL--ALNSLINAFGEDQRDAEAFAVLQYMKENGL-KPDVV----TYTTLMKALIRVDKFHKVFS 647 (664)
Q Consensus 575 a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~l~~a~~~~g~~~~A~~ 647 (664)
. ..+..-...|+.-+.. .+.-++..+++.+++++|+.+...+.+... .-+.. .-...+.+.+..+++.+|+.
T Consensus 609 ~-~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~ 687 (895)
T KOG2076|consen 609 G-TEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFS 687 (895)
T ss_pred h-hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 0 1122222233333322 456678889999999999999999987432 22222 23456667778899999998
Q ss_pred HHH
Q 006012 648 SYL 650 (664)
Q Consensus 648 ~~~ 650 (664)
.++
T Consensus 688 ~lR 690 (895)
T KOG2076|consen 688 YLR 690 (895)
T ss_pred HHH
Confidence 887
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.61 E-value=7.3e-10 Score=112.80 Aligned_cols=482 Identities=12% Similarity=0.057 Sum_probs=349.0
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHH-HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012 141 SSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEA-FLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKM 219 (664)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 219 (664)
...+.|..+...++++. |.++.+|-.-+..=.....-... ++..+-.+.++..|-..+ ...+.+.|.-++.+.
T Consensus 329 hp~d~aK~vvA~Avr~~--P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAV----elE~~~darilL~rA 402 (913)
T KOG0495|consen 329 HPPDVAKTVVANAVRFL--PTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAV----ELEEPEDARILLERA 402 (913)
T ss_pred CChHHHHHHHHHHHHhC--CCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHH----hccChHHHHHHHHHH
Confidence 34577888888888875 66666654433321111111111 111344566677776554 455667799999988
Q ss_pred HHcCCCCC-hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----HHhC
Q 006012 220 RQDGYHCD-FINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGM----AQGV 294 (664)
Q Consensus 220 ~~~g~~p~-~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~ 294 (664)
.+. .|. ...| -++++...+ .-+++++....+ .++.+..+|-+-...=-..|+.+....+.++ +...
T Consensus 403 vec--cp~s~dLw----lAlarLetY--enAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~n 473 (913)
T KOG0495|consen 403 VEC--CPQSMDLW----LALARLETY--ENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQAN 473 (913)
T ss_pred HHh--ccchHHHH----HHHHHHHHH--HHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Confidence 875 333 2333 344454444 335688887765 4678888888877777888999998888764 4568
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012 295 GLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP--RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHT 372 (664)
Q Consensus 295 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 372 (664)
|+..+...|..=...|-..|..-.+..+....+..|+.- ...||+.-.+.|.+.+.++-|..+|...++.-. .+...
T Consensus 474 gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~sl 552 (913)
T KOG0495|consen 474 GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSL 552 (913)
T ss_pred ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHH
Confidence 899999999999999999999999999999998877753 357899999999999999999999999988633 36778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006012 373 YSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK 452 (664)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 452 (664)
|...+..--..|..++...+|++.... ++-....|......+-..|+...|..++....+.. +.+...|-.-+.....
T Consensus 553 Wlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~e 630 (913)
T KOG0495|consen 553 WLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFE 630 (913)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhc
Confidence 888887777889999999999999865 34566677777788888999999999999988765 3477888999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012 453 YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRL 532 (664)
Q Consensus 453 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 532 (664)
..+++.|..+|.+.... .++...|.--+...--.+..++|++++++.++.- +.-...|..+.+.+.+.++.+.|.+.
T Consensus 631 n~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 631 NDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred cccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999998865 5777888777777777899999999999998873 44456788888999999999999998
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh-----------------------hhHHHHHHHHHHHHHCCCCC
Q 006012 533 LGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE-----------------------GLSDQAVNAFRVMRTDGLKP 589 (664)
Q Consensus 533 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-----------------------~~~~~a~~~~~~m~~~g~~p 589 (664)
|..-.+. +.-....|..|.+.=-+.|.+-.|..+++ |..++|..+..+..+. +..
T Consensus 708 Y~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~ 785 (913)
T KOG0495|consen 708 YLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPS 785 (913)
T ss_pred HHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCc
Confidence 8776654 33356788888888899999999999987 3333343333333322 222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 590 SNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 590 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
+...|..-|....+.++....+..+++ ..-|+....++...+....++++|++-|+
T Consensus 786 sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~ 841 (913)
T KOG0495|consen 786 SGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFE 841 (913)
T ss_pred cchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333332221 34466666677777777777888877776
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.56 E-value=1e-10 Score=123.47 Aligned_cols=355 Identities=15% Similarity=0.140 Sum_probs=246.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006012 275 FAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDA 354 (664)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 354 (664)
....|++++|.+++.++++.. +.+...|.+|...|-+.|+.+++...+-..-..+. -|...|..+.....+.|.+++|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHH
Confidence 334488888888888888764 55778888888888888888888877755544432 2667888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHH
Q 006012 355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFI----YSRILAGYRDRGEWQRTFQVLKE 430 (664)
Q Consensus 355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~----~~~ll~~~~~~g~~~~a~~~~~~ 430 (664)
.-.|.+.++.... +...+---+..|-+.|+...|..-|.++.+...+.+..- -..++..+...++.+.|++.++.
T Consensus 227 ~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888876543 555555567778888888888888888877653222222 22345566677777888888777
Q ss_pred HHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC---------------------------CCCCHHHHHHHH
Q 006012 431 MKSS-GVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG---------------------------IEPDTITWNTLI 482 (664)
Q Consensus 431 m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~~~~~~~~~li 482 (664)
.... +-..+...++.++..|.+..+++.|......+.... ..++... --++
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ 384 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLM 384 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHh
Confidence 6552 223455667777888888888888887777665511 1122222 1233
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006012 483 DCHFKCGRYDRAEELFEEMQERG--YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGR 560 (664)
Q Consensus 483 ~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 560 (664)
-++......+....+..-+.+.+ ..-+...|.-+.+++...|++.+|+.++..+.....--+..+|-.+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 34444444555555555555555 3345567888888999999999999999999887544567888899999999999
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHH
Q 006012 561 FDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMK--------ENGLKPDVVTYTT 631 (664)
Q Consensus 561 ~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~ 631 (664)
+++|++.++.. .. ..|+. ..-.+|-..+.+.|++++|.+.++.+. ..+..|+......
T Consensus 465 ~e~A~e~y~kv-----------l~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 465 YEEAIEFYEKV-----------LI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred HHHHHHHHHHH-----------Hh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 99888875532 22 34543 345567777888899999999988853 3346667777777
Q ss_pred HHHHHHhcCCHhHHH
Q 006012 632 LMKALIRVDKFHKVF 646 (664)
Q Consensus 632 l~~a~~~~g~~~~A~ 646 (664)
..+.|.+.|+.++=.
T Consensus 532 r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 532 RCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHhhhHHHHH
Confidence 888888888887733
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.1e-10 Score=111.20 Aligned_cols=361 Identities=12% Similarity=0.093 Sum_probs=261.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHH
Q 006012 188 RQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQL 267 (664)
Q Consensus 188 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~ 267 (664)
+...|..-+......+.+.|....|+..|......- +-.-..|..+...+... ....... .+.+.|...
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit~~---------e~~~~l~-~~l~~~~h~ 227 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELITDI---------EILSILV-VGLPSDMHW 227 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhchH---------HHHHHHH-hcCcccchH
Confidence 344566677777777889999999999999887641 22333444433322211 1111111 122222111
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHH
Q 006012 268 --LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLK--PRTKAYNALLK 343 (664)
Q Consensus 268 --~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p~~~~~~~li~ 343 (664)
---+..+|-...+.+++++-.+.....|++.+...-+....+.-...++++|+.+|+++.+...- -|..+|..++-
T Consensus 228 M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 228 MKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 11234566667788999999999998887666665566666677889999999999999987321 26778877765
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006012 344 GYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQR 423 (664)
Q Consensus 344 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 423 (664)
.--...++.---+..-.+-+ --+.|.-.+.+-|.-.++.++|...|++..+.+ +.....|+.+..-|...++...
T Consensus 308 v~~~~skLs~LA~~v~~idK----yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 308 VKNDKSKLSYLAQNVSNIDK----YRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred HHhhhHHHHHHHHHHHHhcc----CCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHH
Confidence 54333222211111111111 234567778888999999999999999998876 4566789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006012 424 TFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQE 503 (664)
Q Consensus 424 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 503 (664)
|++-++...+.. +.|-..|-.|.++|.-.+...-|+-.|++..+.. +.|...|.+|.++|.+.++.++|++.|++...
T Consensus 383 Ai~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999999875 6788999999999999999999999999998764 56899999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChHHHHHH
Q 006012 504 RGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ----GLLPN--VVTYTTLVDIYGQSGRFDDAIEC 567 (664)
Q Consensus 504 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~ 567 (664)
-| ..+...+..|.+.+.+.++.++|.+.+.+-++. |..-+ .....-|..-+.+.+++++|..+
T Consensus 461 ~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 461 LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 87 446789999999999999999999999887762 33322 12222245567778888877653
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=3.4e-11 Score=125.36 Aligned_cols=279 Identities=13% Similarity=0.121 Sum_probs=213.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHH
Q 006012 278 AGDASKAMRFLGMAQGVGLSPK-TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAY--NALLKGYVKMGYLKDA 354 (664)
Q Consensus 278 ~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~a 354 (664)
.|++++|.+.+....+.. ++ ...|........+.|+++.|.+.+.++.+. .|+.... ......+...|+.+.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 599999998887765532 22 333444455558899999999999999875 3443322 2346788889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 006012 355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS-------FIYSRILAGYRDRGEWQRTFQV 427 (664)
Q Consensus 355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~ 427 (664)
...++++.+.... +......+...|.+.|++++|.+++..+.+....++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999887644 6788889999999999999999999999887654322 1333344444445556666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006012 428 LKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYF 507 (664)
Q Consensus 428 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 507 (664)
++.+-+. .+.+......+...+...|+.++|.+++++..+. .++... .++.+.+..++.+++++..+...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 6665432 2457888889999999999999999999999874 455422 23344456699999999999999876 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012 508 PCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE 569 (664)
Q Consensus 508 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (664)
-|...+..+.+.|.+.+++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.++++
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67778889999999999999999999999984 6899999999999999999999988865
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=4.8e-11 Score=124.94 Aligned_cols=289 Identities=13% Similarity=0.057 Sum_probs=211.1
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006012 276 AKAGDASKAMRFLGMAQGVGLSPK-TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDA 354 (664)
Q Consensus 276 ~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 354 (664)
...|+++.|.+.+.+..+. .|+ ...+-....+..+.|+.+.|.+.+.+..+....++....-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3569999999999887765 344 4455566788888999999999999987654333333444457888889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHH
Q 006012 355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGY---RDRGEWQRTFQVLKEM 431 (664)
Q Consensus 355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~---~~~g~~~~a~~~~~~m 431 (664)
...++.+.+..+. +..++..+...|...|++++|.+++..+.+.+..+..........++ ...+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999988644 67788899999999999999999999999886543332211111221 2233333334444444
Q ss_pred HHCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006012 432 KSSGV---EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTIT---WNTLIDCHFKCGRYDRAEELFEEMQERG 505 (664)
Q Consensus 432 ~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (664)
.+... +.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 43321 2378888999999999999999999999999864 33331 1222222344577888999998888764
Q ss_pred CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhh
Q 006012 506 YFPCT--TTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEG 570 (664)
Q Consensus 506 ~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 570 (664)
+-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++++.
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444 567789999999999999999999644444578999999999999999999999988763
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=1.3e-10 Score=121.09 Aligned_cols=247 Identities=11% Similarity=0.042 Sum_probs=131.4
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 006012 381 ANAGRWESARIVLKEMEVSHAKPNSF--IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHH 458 (664)
Q Consensus 381 ~~~g~~~~A~~l~~~m~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 458 (664)
.+.|+.+.|...+.++.+.. |+.. ........+...|+++.|.+.++++.+.. +-+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 45555555555555554432 2221 11122344555555555555555555443 3344555555555555566666
Q ss_pred HHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012 459 AMAAFDRMLSEGIEPDT-------ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKR 531 (664)
Q Consensus 459 A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 531 (664)
|.+++..+.+.+..++. ..|..++.......+.+...++++.+.+.- +.+......+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66555555554432111 122222332233334445555555543332 3456666666667777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 006012 532 LLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEA 610 (664)
Q Consensus 532 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A 610 (664)
++.+..+. .|+.... ++.+....++.+++++.++ ...+. .|+ ...+..+...|.+.|++++|
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e-----------~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLR-----------QQIKQ--HGDTPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHH-----------HHHhh--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 77666653 3343221 2222234466666555433 22221 233 34566667777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 611 FAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 611 ~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
.+.|+.+.+ ..|+..++..+..++.+.|+.++|.++|+
T Consensus 348 ~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 348 SLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777776 46777777777777777777777776666
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=7.8e-11 Score=123.34 Aligned_cols=257 Identities=8% Similarity=-0.050 Sum_probs=128.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 006012 378 DAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLH 457 (664)
Q Consensus 378 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 457 (664)
..+.+.|+.+.|.+.+.+..+....+...........+...|+++.|...++.+.+.. +-+..+...+...+.+.|+++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence 3344444444444444444332211111222223444444455555555555544443 223344445555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012 458 HAMAAFDRMLSEGIEPDTITWN-TLIDCH---FKCGRYDRAEELFEEMQERG---YFPCTTTYNIMINLLGEQERWEDVK 530 (664)
Q Consensus 458 ~A~~~~~~m~~~g~~~~~~~~~-~li~~~---~~~g~~~~A~~~~~~m~~~~---~~p~~~t~~~ll~~~~~~g~~~~a~ 530 (664)
+|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+..+.+.. .+.+...+..+...+...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 205 ALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 555555555544322 211111 111111 12222222233333333321 1125666666667777777777777
Q ss_pred HHHHHHHHCCCCCCHHHH-HHHHHHH--HhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhc
Q 006012 531 RLLGNMRAQGLLPNVVTY-TTLVDIY--GQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN---LALNSLINAFGED 604 (664)
Q Consensus 531 ~~~~~m~~~~~~p~~~~~-~~li~~~--~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~ 604 (664)
+++++..+.. ||.... ..++..+ ...++.+.+.+.++ +..+ ..|+. ....++...|.+.
T Consensus 284 ~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e-----------~~lk--~~p~~~~~~ll~sLg~l~~~~ 348 (409)
T TIGR00540 284 EIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIE-----------KQAK--NVDDKPKCCINRALGQLLMKH 348 (409)
T ss_pred HHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHH-----------HHHH--hCCCChhHHHHHHHHHHHHHc
Confidence 7777776643 222210 0122222 22344444444322 2222 13433 4456788888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 006012 605 QRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLF 651 (664)
Q Consensus 605 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~ 651 (664)
|++++|.+.|+........|+...+..+...+.+.|+.++|.++|+.
T Consensus 349 ~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 349 GEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred ccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888888533333678888888888888888888888888873
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.51 E-value=1.4e-13 Score=136.68 Aligned_cols=262 Identities=17% Similarity=0.168 Sum_probs=101.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006012 270 DVIVGFAKAGDASKAMRFLGMAQGVG-LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM 348 (664)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 348 (664)
.+...+.+.|++++|+++++...... .+.|..-|..+.......++.++|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44667778888899988886544332 1334555666666777788888888888888876543 55567777776 688
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012 349 GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSH-AKPNSFIYSRILAGYRDRGEWQRTFQV 427 (664)
Q Consensus 349 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~ 427 (664)
+++++|.+++....+.. ++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887765542 456667778888888888888888888876532 345667777888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006012 428 LKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYF 507 (664)
Q Consensus 428 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 507 (664)
+++..+.. +.|....+.++..+...|+.+++..++....+.. +.|...+..+..+|...|+.++|+..|++..+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 88887763 3356777788888888888888777777776543 3455567778888888888888888888887765 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 508 PCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (664)
Q Consensus 508 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 538 (664)
.|......+..++...|+.++|.++..+..+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 5777778888888888888888887776543
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=4.1e-10 Score=110.36 Aligned_cols=364 Identities=14% Similarity=0.061 Sum_probs=242.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--H
Q 006012 260 KIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTK--A 337 (664)
Q Consensus 260 ~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~--~ 337 (664)
+...|...+-.....+.+.|..+.|+..|......- +-.-..|..|...+. +.+. ...+.. +.+.|.. .
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit---~~e~----~~~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT---DIEI----LSILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc---hHHH----HHHHHh-cCcccchHHH
Confidence 345555555555556667788888888887766421 223334443333221 1111 111111 1221211 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHH
Q 006012 338 YNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHA--KPNSFIYSRILAGY 415 (664)
Q Consensus 338 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--~~~~~~~~~ll~~~ 415 (664)
=--+..++-...+.+++.+-.+.....|+..+...-+....+.-...++++|+.+|+++.+... --|..+|+.++..-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 1123445555667788888888888888765555555555556677889999999999987642 23556777666443
Q ss_pred HhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006012 416 RDRGEWQ-RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRA 494 (664)
Q Consensus 416 ~~~g~~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 494 (664)
....+.. -|..++. + . +-.+.|+..+.+-|.-.++.++|...|++.++.+ +.....|+.+.+-|....+...|
T Consensus 310 ~~~skLs~LA~~v~~-i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 310 NDKSKLSYLAQNVSN-I--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred hhhHHHHHHHHHHHH-h--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence 3322211 1111111 1 1 3345677778888888899999999999999876 34567888889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHH
Q 006012 495 EELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQ 574 (664)
Q Consensus 495 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 574 (664)
.+-+++.++-+ +.|...|-.|.++|.-.+...-|+-.|++..... +-|...|.+|.++|.+.++.++|++++.+.
T Consensus 384 i~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykra--- 458 (559)
T KOG1155|consen 384 IESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRA--- 458 (559)
T ss_pred HHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHH---
Confidence 99999999887 7788899999999999999999999999998853 337899999999999999999999886532
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHhcCCHhHHHHH
Q 006012 575 AVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE----NGLKPDV--VTYTTLMKALIRVDKFHKVFSS 648 (664)
Q Consensus 575 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~~~~l~~a~~~~g~~~~A~~~ 648 (664)
...| ..+...+..|...|-+.++.++|.+++++-++ .|...+. ....-|..-+.+.+++++|..+
T Consensus 459 --------i~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 459 --------ILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred --------Hhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 2222 22456788899999999999999998887765 2433332 2223356667788888888775
Q ss_pred HHHH
Q 006012 649 YLFF 652 (664)
Q Consensus 649 ~~~~ 652 (664)
--.-
T Consensus 530 a~~~ 533 (559)
T KOG1155|consen 530 ATLV 533 (559)
T ss_pred HHHH
Confidence 5433
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.4e-08 Score=99.97 Aligned_cols=420 Identities=13% Similarity=0.084 Sum_probs=313.4
Q ss_pred CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHhh----CCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLS----QRQRLTPLTYNALISACARNDDLEKALN 214 (664)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~ 214 (664)
+++++..|..+|++++... ..+..++-.-+.+=.++..+..|+.+. ...|.-...|...+..=-..|+..-|.+
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 4567889999999999876 455567777788888888888888771 1222223466666666677899999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006012 215 LMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV 294 (664)
Q Consensus 215 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 294 (664)
+|++-.+ +.|+...|.+.++.=.+.+..+. ++.+|+..+- +.|++..|-.....=.++|.+..|..+|+.+.+.
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeier--aR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIER--ARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHH--HHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 9999776 47999999999998888877744 5688888764 3689999998888889999999999999987753
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH--------HHHHH
Q 006012 295 -GL-SPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR--TKAYNALLKGYVKMGYLKDAEFV--------VSEME 362 (664)
Q Consensus 295 -g~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~--------~~~m~ 362 (664)
|- .-+...+++....-.+++.++.|.-+|+-.++. ++-+ ...|..+...--+.|+....... ++.+.
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 20 112344555556666778899999999888775 2223 45566666655566765444333 34444
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-H------HHHHHHHHH---HhcCCHHHHHHHHHHHH
Q 006012 363 RSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS-F------IYSRILAGY---RDRGEWQRTFQVLKEMK 432 (664)
Q Consensus 363 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~-~------~~~~ll~~~---~~~g~~~~a~~~~~~m~ 432 (664)
+.+. .|-.+|--.++.--..|+.+...++|+..+..- +|-. . .|.-+=.++ ....+.+.+.++++..+
T Consensus 316 ~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4443 377888888888888999999999999998653 4422 1 222121222 45678999999999988
Q ss_pred HCCCCCCHHHHHHHHHHH----hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006012 433 SSGVEPDTHFYNVMIDTF----GKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP 508 (664)
Q Consensus 433 ~~g~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 508 (664)
+. ++-...|+.-+=-+| .++.++..|.+++...+ |..|-..++..-|..-.+.+.+|.+.+++++.++.+ +-
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe 469 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PE 469 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hH
Confidence 73 455556666554444 46788999999998876 557899999999999999999999999999999987 66
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHH
Q 006012 509 CTTTYNIMINLLGEQERWEDVKRLLGNMRAQG-LLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSD 573 (664)
Q Consensus 509 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 573 (664)
+..+|......=...|+.+.|..+|.-++... +......|.+.|+-=...|.++.|..+++.+++
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 77888888888888999999999999999863 333456788888888899999999988775554
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=3.1e-08 Score=97.56 Aligned_cols=448 Identities=12% Similarity=0.053 Sum_probs=317.6
Q ss_pred CHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCCChHHHHHH
Q 006012 178 KLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFI-NYSLVIQSLTRTNKIDSSLLQKL 252 (664)
Q Consensus 178 ~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~~~~~~l 252 (664)
.+..|+.+ ......+...|-.-+..=.++..+..|..++++.... -|-+. .|-.-+..=-..|++ +-++++
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi--~gaRqi 163 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNI--AGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhccc--HHHHHH
Confidence 34445444 3344567779999999999999999999999998875 33321 222222222234565 557899
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CC
Q 006012 253 YKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES-GL 331 (664)
Q Consensus 253 ~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~ 331 (664)
|+.... ..|+...|++.|+.=.+-...+.|..+++..+- +.|++.+|.-....-.++|....|..+|+...+. |-
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 998875 489999999999999999999999999999876 3699999999999999999999999999988763 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHhcCC
Q 006012 332 -KPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLP-DEHTYSLLIDAYANAGRWESARIV--------LKEMEVSHA 401 (664)
Q Consensus 332 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~l--------~~~m~~~~~ 401 (664)
..+...+++....-.++..++.|.-+|+-.++.=.+. ....|..+...=-+-|+....... ++.+...+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n- 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN- 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-
Confidence 1123445555555556778899999999888763221 144555555555556665544333 33444433
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH--------HHHhccCCHHHHHHHHHHHHHCCC
Q 006012 402 KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDT--HFYNVMI--------DTFGKYNCLHHAMAAFDRMLSEGI 471 (664)
Q Consensus 402 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li--------~~~~~~g~~~~A~~~~~~m~~~g~ 471 (664)
+.|-.+|--.++.-...|+.+...++|+..+.. ++|-. ..|...| -.=....+.+.+.++|+..++. +
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 567788888888888899999999999998865 34422 1121111 1123567899999999998873 3
Q ss_pred CCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012 472 EPDTITWNTLIDCH----FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVT 547 (664)
Q Consensus 472 ~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 547 (664)
+....|+.-+--+| .++.++..|.+++...+. ..|-..+|...|..=.+.+++|....++.+.++.+.. +..+
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~ 473 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYA 473 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHH
Confidence 44455665554444 467889999999887765 4688899999999999999999999999999997654 7888
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006012 548 YTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDG-LKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV 626 (664)
Q Consensus 548 ~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 626 (664)
|......=...|+.+.|..+|+ -..+.. +.--...|.+.|+-=...|.++.|..+++++++. .+..
T Consensus 474 W~kyaElE~~LgdtdRaRaife-----------lAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~ 540 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFE-----------LAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHV 540 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH-----------HHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccc
Confidence 8888888888999998888765 223221 1122357888888888999999999999999884 3344
Q ss_pred HHHHHHHHHHH-----hcC-----------CHhHHHHHHHHH
Q 006012 627 VTYTTLMKALI-----RVD-----------KFHKVFSSYLFF 652 (664)
Q Consensus 627 ~~~~~l~~a~~-----~~g-----------~~~~A~~~~~~~ 652 (664)
.+|.+...-=. +.| ....|..+|+.-
T Consensus 541 kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferA 582 (677)
T KOG1915|consen 541 KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERA 582 (677)
T ss_pred hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHH
Confidence 45655544222 233 455677777743
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=3.3e-10 Score=110.27 Aligned_cols=467 Identities=14% Similarity=0.110 Sum_probs=300.3
Q ss_pred hhHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-----hCCCCCCH----H
Q 006012 127 PLWHSLLKNLCSS---NSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-----SQRQRLTP----L 194 (664)
Q Consensus 127 ~~~~~~l~~l~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-----~~~~~~~~----~ 194 (664)
.+..++|..++.. .....+|+--++-+++...++..-.+--.+.+.+.+...+..|++. .+.+..+. .
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 3455666555432 3345677777787877766555444444567788888889888876 33333332 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCCChHHHHHHHHHHHhCCC------------
Q 006012 195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFI-NYSLVIQSLTRTNKIDSSLLQKLYKEIECDKI------------ 261 (664)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~------------ 261 (664)
..+.+...+.+.|.++.|+..|+...+. .|+.. .|+.++.+++-. + ....++.|..|+....
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~-d--~ekmkeaf~kli~ip~~~dddkyi~~~d 352 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIG-D--AEKMKEAFQKLIDIPGEIDDDKYIKEKD 352 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecC-c--HHHHHHHHHHHhcCCCCCCcccccCCcC
Confidence 5666667789999999999999998876 47775 466666655533 2 2334667777765322
Q ss_pred CCCHHHHHHHH-----HHHHHcCC--HHHHHHHHHHHHhCCCCCCHHH---H----------H--------HHHHHHHhc
Q 006012 262 ELDGQLLNDVI-----VGFAKAGD--ASKAMRFLGMAQGVGLSPKTAT---Y----------A--------AVITALSNS 313 (664)
Q Consensus 262 ~~d~~~~~~li-----~~~~~~g~--~~~A~~~~~~~~~~g~~~~~~~---~----------~--------~li~~~~~~ 313 (664)
.||....|.-| .-+-+.++ .++++-.--++..--+.|+-.. | . .-...+.++
T Consensus 353 dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 353 DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 23444444333 22222222 2233222223322222333211 0 0 112246788
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012 314 GRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK--MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARI 391 (664)
Q Consensus 314 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 391 (664)
|+++.|.+++.-+.+..-+.-...-|.|...+.- ..++..|.+.-+...... .-+......-.......|++++|.+
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 8999999988888775443333334444333332 336777777777665432 1233333333333445789999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 006012 392 VLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI 471 (664)
Q Consensus 392 l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 471 (664)
.|++....+-.-....|+ +.-.+-..|+.++|++.|-++... +..+..+...+...|-...+..+|++++.+.... +
T Consensus 512 ~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred HHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 999988654222222232 333566789999999999877543 1356777888888999999999999998777543 4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012 472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTL 551 (664)
Q Consensus 472 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 551 (664)
+.|.....-|...|-+.|+-.+|++.+-+--.. ++-+..+...|..-|....-++++..+|++..- ++|+..-|-.+
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlm 665 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLM 665 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHH
Confidence 667888999999999999999999886554333 456788888888889999999999999998865 68999999888
Q ss_pred HHHH-HhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 552 VDIY-GQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMK 618 (664)
Q Consensus 552 i~~~-~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 618 (664)
+..| .+.|++.+|.+++ +...++ +.-|......|++.+...|. .++.++-+++.
T Consensus 666 iasc~rrsgnyqka~d~y-----------k~~hrk-fpedldclkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLY-----------KDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred HHHHHHhcccHHHHHHHH-----------HHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence 7654 5789998887774 333332 44577788888888877775 34555544443
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=2.1e-13 Score=135.57 Aligned_cols=258 Identities=15% Similarity=0.126 Sum_probs=101.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 006012 375 LLIDAYANAGRWESARIVLKEMEVSH-AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY 453 (664)
Q Consensus 375 ~li~~~~~~g~~~~A~~l~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 453 (664)
.+...+.+.|++++|++++++..... .+.+...|..+...+...++++.|.+.++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 44666777788888888775544333 233444445555566667778888888888776542 245566666666 677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012 454 NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG-YFPCTTTYNIMINLLGEQERWEDVKRL 532 (664)
Q Consensus 454 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~ 532 (664)
+++++|.+++....+. .++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888887766554 2456667778888888888888888888876542 345677788888888888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012 533 LGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFA 612 (664)
Q Consensus 533 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 612 (664)
+++.++.... |..+...++..+...|+.+++.++++..... . ..|...|..+..+|...|+.++|+.
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--------~----~~~~~~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKA--------A----PDDPDLWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------------HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--------C----cCHHHHHHHHHHHhccccccccccc
Confidence 9988885322 5777888888888888888877765432221 1 2344567888889999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 613 VLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 613 ~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
++++..+. -+.|..+...+.+++.+.|+.++|.++++
T Consensus 236 ~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 236 YLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHH-STT-HHHHHHHHHHHT-------------
T ss_pred cccccccc-ccccccccccccccccccccccccccccc
Confidence 99998874 24478888889999999999999998876
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=6.4e-10 Score=104.22 Aligned_cols=276 Identities=15% Similarity=0.146 Sum_probs=214.5
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHH
Q 006012 277 KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR---TKAYNALLKGYVKMGYLKD 353 (664)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~ 353 (664)
-.++.++|.++|-+|.+.. +-+..+.-+|.+.|.+.|..+.|+++.+.+.++.--+. ......|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3578999999999998743 34566778899999999999999999999987522211 2345567778899999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHH
Q 006012 354 AEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSF----IYSRILAGYRDRGEWQRTFQVLK 429 (664)
Q Consensus 354 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~ 429 (664)
|+.+|..+.+.+. .-......|+..|-...+|++|+++-+++...+..+..+ .|.-+...+....+++.|..++.
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999988653 256677889999999999999999999998776554432 45566667777889999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006012 430 EMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC 509 (664)
Q Consensus 430 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 509 (664)
+..+.+ +..+..-..+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+.++.+....
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-- 281 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-- 281 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC--
Confidence 988764 33444555677788999999999999999998865555667889999999999999999999999887533
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012 510 TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSG 559 (664)
Q Consensus 510 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 559 (664)
...-..+.+.-....-.+.|...+.+-++. +|+...+..+++.-..-+
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~da 329 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADA 329 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccc
Confidence 344445555545555556666666665554 699999999998765443
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1.8e-09 Score=106.65 Aligned_cols=413 Identities=13% Similarity=0.017 Sum_probs=259.9
Q ss_pred HhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012 136 LCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEK 211 (664)
Q Consensus 136 l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~ 211 (664)
-|-..+.+++|...+.|+++.. |..+..|....-+|...|++.+..+. .+..+.-+.+++.-.+++-..|++.+
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence 3446789999999999999874 66578889999999999999988776 23333345577777778888899888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012 212 ALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDK--IELDGQLLNDVIVGFAKAGDASKAMRFLG 289 (664)
Q Consensus 212 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~--~~~d~~~~~~li~~~~~~g~~~~A~~~~~ 289 (664)
|+.-..-..-.|-.-|..+-..+=+.+-+.+. ...-+.+.+++ +-|.....++....|-..=
T Consensus 202 al~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~------~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~---------- 265 (606)
T KOG0547|consen 202 ALFDVTVLCILEGFQNASIEPMAERVLKKQAM------KKAKEKLKENRPPVLPSATFIASYFGSFHADP---------- 265 (606)
T ss_pred HHHhhhHHHHhhhcccchhHHHHHHHHHHHHH------HHHHHhhcccCCCCCCcHHHHHHHHhhccccc----------
Confidence 87654443322212222222222222222211 11112222222 3355544444443332110
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh--c---CChHHHHHHHHHHHH---cCCC---CC------HHHHHHHHHHHHhcCCHH
Q 006012 290 MAQGVGLSPKTATYAAVITALSN--S---GRTIEAEAVFEELKE---SGLK---PR------TKAYNALLKGYVKMGYLK 352 (664)
Q Consensus 290 ~~~~~g~~~~~~~~~~li~~~~~--~---g~~~~A~~l~~~m~~---~~~~---p~------~~~~~~li~~~~~~g~~~ 352 (664)
......+...+...+..++.. . ..+..|.+.+.+-.. .... .| ..+.+.-...+.-.|+..
T Consensus 266 --~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 266 --KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred --cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 000000000111111111110 0 112233333322111 0000 01 122222223344568889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 353 DAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMK 432 (664)
Q Consensus 353 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 432 (664)
.|..-|+..+.....++ ..|--+...|....+.++.++.|......+ +-|+.+|..-...+.-.+++++|..=|++.+
T Consensus 344 ~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred hhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988755433 337777888999999999999999998776 4566777777888888899999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CC
Q 006012 433 SSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG-----YF 507 (664)
Q Consensus 433 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~ 507 (664)
... +.+...|.-+.-+..+.+.+++++..|++.++. ++.....|+.....+...+++++|.+.|+..++.. +.
T Consensus 422 ~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~ 499 (606)
T KOG0547|consen 422 SLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII 499 (606)
T ss_pred hcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence 764 445667777777778889999999999999876 35567889999999999999999999999887642 11
Q ss_pred CCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHH
Q 006012 508 PCTTTYN-IMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSD 573 (664)
Q Consensus 508 p~~~t~~-~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 573 (664)
.+..++. --+-.+--.+++..|.+++++.++.+.+ ....|-.|...-.+.|++++|+++|+....
T Consensus 500 v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2222221 1111222458999999999999986544 456788999999999999999999875444
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=4.7e-09 Score=101.65 Aligned_cols=283 Identities=14% Similarity=0.124 Sum_probs=230.0
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012 277 KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEF 356 (664)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 356 (664)
..|++.+|.+...+..+.+ +.....|..-..+--+.|+.+.+-+.+.+..+..-.++...+-+........|+...|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3599999999999887766 334566777778888999999999999999886455677778888888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 006012 357 VVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS-------FIYSRILAGYRDRGEWQRTFQVLK 429 (664)
Q Consensus 357 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~ 429 (664)
-++++.+.+.. +.........+|.+.|++.+...++..|.+.+.-.+. .+|..++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999988755 7788899999999999999999999999998876554 367777777777777776666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006012 430 EMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC 509 (664)
Q Consensus 430 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 509 (664)
..-.. .+.++..-.+++.-+.++|+.++|.++..+..+++..+.. ...-.+.+-++.+.-++..+.-.+.. +.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 65433 2456677778889999999999999999999988766552 12224556777777777777766553 455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012 510 TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE 569 (664)
Q Consensus 510 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (664)
+..+.+|...|.+.+.|.+|.+.|+...+ ..|+..+|+-+.+++.+.|+..+|.++.+
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 68899999999999999999999998877 47899999999999999999999988754
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=3.3e-09 Score=102.70 Aligned_cols=287 Identities=16% Similarity=0.122 Sum_probs=220.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006012 313 SGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIV 392 (664)
Q Consensus 313 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 392 (664)
.|++..|+++..+-.+.+-.| ...|..-..+--..|+.+.+..++.+.-+..-.++...+-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 689999999999877766543 4566666777788899999999999998864456777788888889999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHH
Q 006012 393 LKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDT-------HFYNVMIDTFGKYNCLHHAMAAFDR 465 (664)
Q Consensus 393 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 465 (664)
++++.+.+ +.+.........+|.+.|++.....+...|.+.|.-.+. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99988775 557778888999999999999999999999998865543 4667777766666666666667766
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006012 466 MLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNV 545 (664)
Q Consensus 466 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 545 (664)
...+ .+.+...-.+++.-+.++|+.++|.++.++..+++..|. ....-.+.+.++.+.-.+..++-.+.. .-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 6533 234555666778888899999999999999988876665 222234566777777777777666652 2255
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 546 VTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKEN 620 (664)
Q Consensus 546 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 620 (664)
..+.+|...|.+.+.+.+|.+.|+ ...+ ..|+..+|+-+.+++.+.|+..+|.+..++....
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~le-----------aAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALE-----------AALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHH-----------HHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 788888888888888888877754 2222 4688888888888888889888888888877643
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=1.7e-10 Score=118.38 Aligned_cols=277 Identities=12% Similarity=0.107 Sum_probs=213.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012 280 DASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGL--KPRTKAYNALLKGYVKMGYLKDAEFV 357 (664)
Q Consensus 280 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~ 357 (664)
+..+|+..|..+... +.-.......+..+|...+++++|.++|+.+.+... .-+..+|.+.+-.+-+.-.+. -+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls---~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS---YL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH---HH
Confidence 567888999885543 233446677788999999999999999999987421 126677887776554322111 12
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006012 358 VSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVE 437 (664)
Q Consensus 358 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 437 (664)
-+.+.+.. +-.+.+|-++..+|.-+++.+.|++.|++..+.+ +...++|+.+..-+....++|.|...|+..+... +
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence 22333322 2367899999999999999999999999998764 3377889999999999999999999999887542 2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012 438 PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMI 517 (664)
Q Consensus 438 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 517 (664)
.+-..|..+...|.|.++++.|+-.|++..+.+ +.+.+....+...+.+.|+.|+|+++++++...+ +-|+..-.-..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 233455567778999999999999999999876 4567777888889999999999999999998877 44555555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 006012 518 NLLGEQERWEDVKRLLGNMRAQGLLP-NVVTYTTLVDIYGQSGRFDDAIEC 567 (664)
Q Consensus 518 ~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 567 (664)
..+...+++++|++.++++++. .| +..++..++..|-+.|+.+.|+.-
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHh
Confidence 7778889999999999999985 45 467788888999999999888765
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=3.2e-09 Score=99.62 Aligned_cols=286 Identities=17% Similarity=0.171 Sum_probs=180.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCH
Q 006012 313 SGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPD------EHTYSLLIDAYANAGRW 386 (664)
Q Consensus 313 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~ 386 (664)
..+.++|.++|-+|.+... -+..+--+|.+.|-+.|..|.|+++++.+.++ || ......|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 5778889999999887432 24455667888888889999999999888875 34 23344566677788888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHH
Q 006012 387 ESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDT----HFYNVMIDTFGKYNCLHHAMAA 462 (664)
Q Consensus 387 ~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~ 462 (664)
|.|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+....+.+.|...
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 88888888887644 344556777788888888888888888877776544332 3445555555566677777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006012 463 FDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL 542 (664)
Q Consensus 463 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 542 (664)
+.+..+.. +..+..--.+.+.+...|++++|.+.++...+.+..--..+...|..+|.+.|+.++...++..+.+...
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~- 280 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT- 280 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 77776654 2233334445566677777777777777777766433445566677777777777777777777766532
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 006012 543 PNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE---DQRDAEAFAVLQYMKE 619 (664)
Q Consensus 543 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 619 (664)
....-..+.+......-.+.|...+ .+++.+ +|+...+..++..-.. .|+..+-...++.|+.
T Consensus 281 -g~~~~l~l~~lie~~~G~~~Aq~~l----------~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 -GADAELMLADLIELQEGIDAAQAYL----------TRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred -CccHHHHHHHHHHHhhChHHHHHHH----------HHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 2222333333333333333333322 223332 5777766666665532 3445555555666654
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=1.9e-10 Score=117.99 Aligned_cols=280 Identities=15% Similarity=0.111 Sum_probs=183.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006012 315 RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGV--LPDEHTYSLLIDAYANAGRWESARIV 392 (664)
Q Consensus 315 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~l 392 (664)
+..+|...|..+... +.-+..+...+..+|...+++++|+++|+.+.+... .-+...|.+.+..+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 356788888885544 332446667788888888899999999988876531 1256677776655432 122222
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 006012 393 LKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE 472 (664)
Q Consensus 393 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 472 (664)
+.+-.-.--+..+.+|.++..+|.-.++.+.|++.|+...+.+ +....+|+.+..-+.....+|.|...|+..+.
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---- 483 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG---- 483 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc----
Confidence 2222111224566788888888888888888888888777653 23567777777777777778888888877764
Q ss_pred CCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012 473 PDTITWN---TLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYT 549 (664)
Q Consensus 473 ~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 549 (664)
.|...|| .|...|.+.++++.|+-.|+...+-+ +-+.+....+...+-+.|+.|+|+++++++...+.+ |+-.--
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 3444444 45556777888888888888777766 555666666777777778888888888877776544 443334
Q ss_pred HHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 550 TLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 550 ~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
.-+..+...+++++|+..++. +.. +.|+.. .|-.++..|.+.|+.+.|+.-|..|.+
T Consensus 562 ~~~~il~~~~~~~eal~~LEe-----------Lk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEE-----------LKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHH-----------HHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 445556666777776666442 222 345543 566667777777777777777777766
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=3.7e-09 Score=104.44 Aligned_cols=221 Identities=15% Similarity=0.194 Sum_probs=168.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 006012 379 AYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHH 458 (664)
Q Consensus 379 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 458 (664)
.+.-.|+.-.|..-|+..+.....++. .|-.+...|....+.++.++.|.+..+.+ +-+..+|..-..++.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 344578888999999999887644433 37778888999999999999999998876 5567788888888888889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 459 AMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (664)
Q Consensus 459 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 538 (664)
|..=|++.+... +-++..|-.+.-+.-+.+++++++..|++..++ ++..+..|+.....+...+++++|.+.++..++
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999998764 335667777777777889999999999999887 466788999999999999999999999999987
Q ss_pred CCCCCC-------H--HHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 006012 539 QGLLPN-------V--VTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDA 608 (664)
Q Consensus 539 ~~~~p~-------~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 608 (664)
. +|+ . .+--+++..- |.+.+++|+.++.+..+ +.|. ...|..|...-.+.|+.+
T Consensus 491 L--E~~~~~~~v~~~plV~Ka~l~~q------------wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 491 L--EPREHLIIVNAAPLVHKALLVLQ------------WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKID 554 (606)
T ss_pred h--ccccccccccchhhhhhhHhhhc------------hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHH
Confidence 5 333 1 1111111111 12334445555555554 3444 347889999999999999
Q ss_pred HHHHHHHHHHH
Q 006012 609 EAFAVLQYMKE 619 (664)
Q Consensus 609 ~A~~~~~~m~~ 619 (664)
+|+++|++...
T Consensus 555 eAielFEksa~ 565 (606)
T KOG0547|consen 555 EAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=5.5e-09 Score=110.13 Aligned_cols=82 Identities=21% Similarity=0.196 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012 368 PDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMI 447 (664)
Q Consensus 368 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 447 (664)
|+..+|.++++.-.-+|+.+.|..++.+|.+.|.+.+.+-|..++-+ .++...+..+++-|...|+.|+..|+.-.+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 45555555555555555555555555555555555555444444433 444444445555555555555555554444
Q ss_pred HHHhc
Q 006012 448 DTFGK 452 (664)
Q Consensus 448 ~~~~~ 452 (664)
..+.+
T Consensus 279 ip~l~ 283 (1088)
T KOG4318|consen 279 IPQLS 283 (1088)
T ss_pred Hhhhc
Confidence 44433
No 54
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.30 E-value=4.2e-07 Score=93.40 Aligned_cols=464 Identities=13% Similarity=0.089 Sum_probs=283.4
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHH
Q 006012 128 LWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISAC 203 (664)
Q Consensus 128 ~~~~~l~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~ 203 (664)
++...++. ...+.+..++.+.+.+++.. +.+..+.....-.+...|+-++|... ......+.++|..+.-.+
T Consensus 10 lF~~~lk~--yE~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 10 LFRRALKC--YETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHH--HHHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 34445543 35567788888888888743 55566777777778888999999876 556677789999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012 204 ARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASK 283 (664)
Q Consensus 204 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~ 283 (664)
....++++|+..|......+ +-|...|.-+--.-.+.++++... ..-....+. .+.....|-.+..++.-.|+...
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~--~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL--ETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998864 334445543332233444432211 111111111 13345678888888888999999
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHH
Q 006012 284 AMRFLGMAQGVG-LSPKTATYAAVI------TALSNSGRTIEAEAVFEELKESGLKPRTKAY-NALLKGYVKMGYLKDAE 355 (664)
Q Consensus 284 A~~~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~ 355 (664)
|..+.+...+.. -.|+...|.... ....+.|..++|.+.+..-... + .|...+ -+-...+.+.+++++|.
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHH
Confidence 999998887654 245655554433 4556778888888877665432 1 133332 34556788899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 356 FVVSEMERSGVLPDEHTYSLL-IDAYANAGRWESAR-IVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS 433 (664)
Q Consensus 356 ~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~-~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 433 (664)
.++..++..+ ||..-|... ..++.+..+.-++. .+|....+.- +........=+.......-.+..-.++..+.+
T Consensus 240 ~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 240 KVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 9999999874 566665554 44444344444444 6666665431 11111111111111122223344556677777
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH----CC----------CCCCHHHHH--HHHHHHHHcCCHHHHHHH
Q 006012 434 SGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLS----EG----------IEPDTITWN--TLIDCHFKCGRYDRAEEL 497 (664)
Q Consensus 434 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g----------~~~~~~~~~--~li~~~~~~g~~~~A~~~ 497 (664)
.|+++- +..+...|-.-...+-.+++.-.+.. .| -+|+...|. .++..|-+.|+++.|..+
T Consensus 317 Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~y 393 (700)
T KOG1156|consen 317 KGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEY 393 (700)
T ss_pred cCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 886653 33333333222211111111111111 11 145655554 467788899999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHH---
Q 006012 498 FEEMQERGYFPCT-TTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSD--- 573 (664)
Q Consensus 498 ~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 573 (664)
++..+.+ .|+. ..|..-.+.+...|..++|..++.+..+.+ .+|...-.--..-..+..++++|.++......
T Consensus 394 Id~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 394 IDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 9999887 3543 445566688899999999999999998875 34655554566667788889998887542221
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 006012 574 QAVNAFRVMRTDGLKPSNLALNSL--INAFGEDQRDAEAFAVLQYMK 618 (664)
Q Consensus 574 ~a~~~~~~m~~~g~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~ 618 (664)
.|+..+..|+- +|-.+ ..+|.+.|++..|++=|....
T Consensus 471 ~~~~~L~~mqc--------mWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 471 GAVNNLAEMQC--------MWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred chhhhHHHhhh--------HHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 22222333331 33322 466777777777776555443
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=6.6e-08 Score=97.63 Aligned_cols=476 Identities=11% Similarity=0.007 Sum_probs=294.4
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh---hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012 141 SSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL---SQRQRLTPLTYNALISACARNDDLEKALNLMS 217 (664)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (664)
..++.|.-+-+.+...+.-|. -.--+..+|.-.|.+..|..+ ......|..+......++.+..++++|+.++.
T Consensus 30 ~~y~~a~f~adkV~~l~~dp~---d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 30 HRYKTALFWADKVAGLTNDPA---DIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred HhhhHHHHHHHHHHhccCChH---HHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566666666655442222 233456666666777776655 44456678888889999999999999999987
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 006012 218 KMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLS 297 (664)
Q Consensus 218 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 297 (664)
+-.. .-+.+.|-..-. .+..+...+. ++ .++......+-.-...|....+.++|.+.|.+....
T Consensus 107 ~~~~---~~~~f~yy~~~~----~~~l~~n~~~----~~--~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~--- 170 (611)
T KOG1173|consen 107 RGHV---ETNPFSYYEKDA----ANTLELNSAG----ED--LMINLESSICYLRGKVYVALDNREEARDKYKEALLA--- 170 (611)
T ss_pred ccch---hhcchhhcchhh----hceeccCccc----cc--ccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc---
Confidence 4311 112222111000 0000000000 00 001111111111123455566778888888777643
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012 298 PKTATYAAVITALSNSGRTIEAEAVFEELKESGL----KPRTKAYNALLKGY-VKMGYLKDAEFVVSEMERSGVLPDEHT 372 (664)
Q Consensus 298 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~----~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~~~~~~ 372 (664)
|...+..+...-... .-.+.+.++.+..... +-+......+.... ++..+ +.....-.+-.-.+..-+...
T Consensus 171 -D~~c~Ea~~~lvs~~--mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 171 -DAKCFEAFEKLVSAH--MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred -chhhHHHHHHHHHHH--hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCchhhhhhhhhcHHH
Confidence 444333332221111 1111122222221110 11122222222211 11100 001000010111123345666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006012 373 YSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK 452 (664)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 452 (664)
.....+-+-..+++.+..++.+...+.. +++...+..-|.++...|+..+-+.+=..|.+.- +....+|-++.-.|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence 6667777888899999999999998765 5666677777789999999888887777787763 5567889999988888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012 453 YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRL 532 (664)
Q Consensus 453 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 532 (664)
.|...+|.+.|.+..... +.=...|-.....|+-.|..|+|+..+....+-= +-....+.-+.--|.+.++.+.|.++
T Consensus 325 i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred hcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHH
Confidence 899999999999876543 1224578889999999999999999988876541 11122233344567889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012 533 LGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFA 612 (664)
Q Consensus 533 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 612 (664)
|.+..... +-|+.+.+-+.-...+.+.+.+|..+|+..... .+....... --..+++.|.++|.+.+++++|+.
T Consensus 403 f~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~----ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 403 FKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV----IKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH----hhhcccccc-chhHHHHhHHHHHHHHhhHHHHHH
Confidence 99988753 337888898888888899999999988744321 222111111 123478899999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 613 VLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 613 ~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
.+++.+.. .+-|..++.+++-.|...|+++.|...|.
T Consensus 477 ~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 477 YYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 99999984 35588999999999999999999999887
No 56
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.29 E-value=3.9e-07 Score=93.62 Aligned_cols=434 Identities=13% Similarity=0.096 Sum_probs=280.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006012 193 PLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVI 272 (664)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li 272 (664)
..-|..++..| ..+++.+.+.+.+.+.+ +++-...|....--.++..|+-+++. .....-.+ +-..+.+.|..+.
T Consensus 8 ~~lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~--~~vr~glr-~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 8 NALFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAY--ELVRLGLR-NDLKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHH--HHHHHHhc-cCcccchhHHHHH
Confidence 34555566654 66888999998888877 33444445544444556666654432 33332222 2244667888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012 273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLK 352 (664)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 352 (664)
-.+-...++++|+..|..+...+ +.|...|.-+--.-.+.|+++.....-..+.+... .....|..+..++--.|+..
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999998865 45677777777777788888888777777766422 24567888888888899999
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012 353 DAEFVVSEMERSG-VLPDEHTYSLLI------DAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTF 425 (664)
Q Consensus 353 ~a~~~~~~m~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 425 (664)
.|..++++..+.. -.|+...+.... ....+.|..++|.+.+......- .-....-..-...+.+.++.++|.
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHH
Confidence 9999999988754 245655554332 33456788888887776654321 111222234456778899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHhccCCHHHHH-HHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006012 426 QVLKEMKSSGVEPDTHFYNVMID-TFGKYNCLHHAM-AAFDRMLSEG---IEPDTITWNTLIDCHFKCGRYDRAEELFEE 500 (664)
Q Consensus 426 ~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~-~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 500 (664)
.++..+... .||...|.-.+. ++.+-.+.-++. .+|....+.- -.|-....+ ......-.+..-+++..
T Consensus 240 ~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls----vl~~eel~~~vdkyL~~ 313 (700)
T KOG1156|consen 240 KVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS----VLNGEELKEIVDKYLRP 313 (700)
T ss_pred HHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH----HhCcchhHHHHHHHHHH
Confidence 999999887 467666655444 444333333344 6666655431 111111111 11112234455567777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC------------CCCHH--HHHHHHHHHHhcCChHHH
Q 006012 501 MQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ--GL------------LPNVV--TYTTLVDIYGQSGRFDDA 564 (664)
Q Consensus 501 m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~------------~p~~~--~~~~li~~~~~~g~~~~A 564 (664)
+..+|+++ ++..+...|-.....+-..++.-.+... |- .|... ++-.++..|-+.|+++.|
T Consensus 314 ~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 314 LLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred HhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 88888655 4444444444433333233333333221 11 34443 444567788899999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 006012 565 IECLEGLSDQAVNAFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFH 643 (664)
Q Consensus 565 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~ 643 (664)
..++++.++ ..|+.+ .|..-.+.+.+.|..++|..++++..+.+ .+|..+-..-+.-..+.++.+
T Consensus 391 ~~yId~AId-------------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 391 LEYIDLAID-------------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred HHHHHHHhc-------------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccH
Confidence 888664332 456654 56666788999999999999999999865 567666667888889999999
Q ss_pred HHHHHHHHHHHhhh
Q 006012 644 KVFSSYLFFNIYKM 657 (664)
Q Consensus 644 ~A~~~~~~~~~~~~ 657 (664)
+|.++..+|...+.
T Consensus 457 eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 457 EAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHhhhccc
Confidence 99999998887663
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.28 E-value=6.6e-09 Score=109.53 Aligned_cols=374 Identities=14% Similarity=0.164 Sum_probs=225.3
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012 214 NLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQG 293 (664)
Q Consensus 214 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 293 (664)
+++-.|...|+.|+.+||..++..||..|+.+.+ .+|..|.-+..+.+...++.++.+....|+.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaa---tif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAA---TIFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCccc---cchhhhhcccccccchhHHHHHhcccccccccCCC--------
Confidence 4566777888888888888888888888887543 27777877777788888888888888888877664
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHH
Q 006012 294 VGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEME-RSGVLPDEHT 372 (664)
Q Consensus 294 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~ 372 (664)
.|...||..|..+|.+.|++.. ++..++ ..-.++..+...|.-..-..++..+. ..+.-||..+
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n 144 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN 144 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH
Confidence 5778888888888888888766 222222 11223444455555444444444432 1223344432
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 373 YSLLIDAYANAGRWESARIVLKEMEVSH-AKPNSFIYSRILAGYRDRG-EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTF 450 (664)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 450 (664)
.+......|-++.+++++..+.... ..|..+ .++-+.... .+++-..+.+...+ .|+..+|..+++.-
T Consensus 145 ---~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~a 214 (1088)
T KOG4318|consen 145 ---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRA 214 (1088)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHH
Confidence 3444566677777777776653221 111111 233333222 23333333333332 58999999999999
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012 451 GKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVK 530 (664)
Q Consensus 451 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 530 (664)
...|+++.|..++.+|.+.|++.+..-|-.|+-+ .+...-+..+++.|.+.|+.|+..|+...+-.+...|....+.
T Consensus 215 laag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~ 291 (1088)
T KOG4318|consen 215 LAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE 291 (1088)
T ss_pred HhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc
Confidence 9999999999999999999998888877777765 7888888899999999999999999998888877755532221
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhh-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006012 531 RLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGL-SDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAE 609 (664)
Q Consensus 531 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 609 (664)
.|.+ ....+.+-+..-.-.| ..|.+.++.. ..-.+..+++..-.|+.-....|. +..-....|+-++
T Consensus 292 --------e~sq-~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~ 359 (1088)
T KOG4318|consen 292 --------EGSQ-LAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEE 359 (1088)
T ss_pred --------cccc-hhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCch
Confidence 2222 2222222222222223 2333333211 111122222222234443444443 3333444677777
Q ss_pred HHHHHHHHHHC--CCCC-CHHHHHHHHHHHHh
Q 006012 610 AFAVLQYMKEN--GLKP-DVVTYTTLMKALIR 638 (664)
Q Consensus 610 A~~~~~~m~~~--g~~p-~~~~~~~l~~a~~~ 638 (664)
.+++...|..- .+.+ +...|..++.-|.+
T Consensus 360 veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr 391 (1088)
T KOG4318|consen 360 VEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR 391 (1088)
T ss_pred HHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence 77777776531 1222 33445555554444
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=5.6e-09 Score=113.67 Aligned_cols=217 Identities=12% Similarity=0.014 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006012 280 DASKAMRFLGMAQGVGLSPKTATYAAVITALSN---------SGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY 350 (664)
Q Consensus 280 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 350 (664)
++++|++.|++..+.. +.+...|..+..++.. .+++++|...+++..+.+.. +...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 4567777777777653 2234455555444332 23467777777777765432 56666667677777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006012 351 LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKE 430 (664)
Q Consensus 351 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 430 (664)
+++|...+++..+.+.. +...+..+...+...|++++|...+++..+.+.. +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 77777777777766432 4556666777777777777777777777665422 222223334445556777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006012 431 MKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQE 503 (664)
Q Consensus 431 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 503 (664)
+.....+.+...+..+...+...|+.++|...+.++.... +.+....+.+...|+..| ++|...++.+.+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 6554312234445556666667777777777776665431 122334444555555555 466666666544
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=1.2e-08 Score=98.34 Aligned_cols=199 Identities=13% Similarity=0.056 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006012 264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLK 343 (664)
Q Consensus 264 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 343 (664)
....+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 35566667777778888888888887776543 33456667777777777777777777777766532 24456666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012 344 GYVKMGYLKDAEFVVSEMERSGVL-PDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ 422 (664)
Q Consensus 344 ~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 422 (664)
.+...|++++|.+.+++..+.... .....+..+...+...|++++|...+++..... +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 777777777777777776653211 123344555555666666666666666655432 223344445555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 006012 423 RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRM 466 (664)
Q Consensus 423 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 466 (664)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555555554443 1223333334444444444444444444443
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=2.5e-11 Score=84.79 Aligned_cols=50 Identities=32% Similarity=0.567 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 006012 191 LTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTR 240 (664)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 240 (664)
||..+||++|++|++.|++++|+++|++|.+.|+.||..||+.+|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999875
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=1e-08 Score=111.73 Aligned_cols=250 Identities=12% Similarity=0.031 Sum_probs=157.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 006012 350 YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN---------AGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE 420 (664)
Q Consensus 350 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 420 (664)
++++|...|++..+.... +...|..+..+|.. .+++++|...+++..+.+ +.+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 356777777777765322 34455555444332 234678888888877664 3466677777777778888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006012 421 WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEE 500 (664)
Q Consensus 421 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 500 (664)
+++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 888888888877764 445667777777888888888888888888776422 222333344456667888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHH
Q 006012 501 MQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN-VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAF 579 (664)
Q Consensus 501 m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~ 579 (664)
+.+...+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|...| ++|...++.+.+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~------ 501 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE------ 501 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH------
Confidence 776542224445666777778888888888888877654 233 344455556667776 355555443221
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 580 RVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKEN 620 (664)
Q Consensus 580 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 620 (664)
... ..+....+..++.++ .|+.+.+..+ +++.+.
T Consensus 502 -~~~---~~~~~~~~~~~~~~~--~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 502 -SEQ---RIDNNPGLLPLVLVA--HGEAIAEKMW-NKFKNE 535 (553)
T ss_pred -Hhh---HhhcCchHHHHHHHH--HhhhHHHHHH-HHhhcc
Confidence 111 123333444444444 6777777666 777664
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=1.2e-08 Score=105.86 Aligned_cols=247 Identities=19% Similarity=0.226 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHC-----CC--
Q 006012 406 FIYSRILAGYRDRGEWQRTFQVLKEMKSS-----G-VEPDTHF-YNVMIDTFGKYNCLHHAMAAFDRMLSE-----GI-- 471 (664)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-- 471 (664)
.+...+...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++... |-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444566666666666666666554432 1 1233322 234666778888888888888887642 21
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 006012 472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQER-----G-YFPCT-TTYNIMINLLGEQERWEDVKRLLGNMRAQ---GL 541 (664)
Q Consensus 472 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~ 541 (664)
+.-..+++.|..+|.+.|++++|..++++..+- + ..|.+ ..++.+...|+..+++++|..++.+..+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 112456777778899999999888888776431 1 12222 23556677788899999999998877642 12
Q ss_pred CCC----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012 542 LPN----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYM 617 (664)
Q Consensus 542 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 617 (664)
.++ ..+++.|...|.+.|++++|.++++. |+...++.......-....++.|...|.+.+++.+|.++|.+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~----ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKK----AIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHH----HHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 222 46889999999999999999998764 3333333332212222457889999999999999999998876
Q ss_pred HH----CCC-CCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHhh
Q 006012 618 KE----NGL-KPD-VVTYTTLMKALIRVDKFHKVFSSYLFFNIYK 656 (664)
Q Consensus 618 ~~----~g~-~p~-~~~~~~l~~a~~~~g~~~~A~~~~~~~~~~~ 656 (664)
.. .|. .|+ ..+|..|..+|.+.|++++|+++-+..-.++
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 53 232 223 4789999999999999999999998654443
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=1.5e-08 Score=97.59 Aligned_cols=198 Identities=12% Similarity=0.018 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012 300 TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDA 379 (664)
Q Consensus 300 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 379 (664)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 4556667777777777777777777776543 224566666777777777777777777777665432 44556666666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 006012 380 YANAGRWESARIVLKEMEVSHA-KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHH 458 (664)
Q Consensus 380 ~~~~g~~~~A~~l~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 458 (664)
+...|++++|.+.+++...... ......+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777776654321 1122334444455555555555555555544432 1223344444444444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012 459 AMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEM 501 (664)
Q Consensus 459 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 501 (664)
|...+++..+.. +.+...+..+...+...|+.++|..+++.+
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444444444331 223333333444444444444444444433
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=5.6e-11 Score=83.01 Aligned_cols=50 Identities=48% Similarity=0.769 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012 473 PDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE 522 (664)
Q Consensus 473 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 522 (664)
||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=5.9e-07 Score=85.49 Aligned_cols=438 Identities=12% Similarity=0.042 Sum_probs=229.4
Q ss_pred CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALN 214 (664)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 214 (664)
+..++..|..+.+.....+. .....+.-=+...+.+.|++++|... .....++...|-.|.-++.-.|.+.+|..
T Consensus 34 s~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred hcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 45688889998888764431 11112333456788889999999876 44455666778888888888899999988
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006012 215 LMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV 294 (664)
Q Consensus 215 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 294 (664)
+-.+..+ ++..-..++...-+.++- .....+++.+.. ...---+|.......-.+.+|++++..+...
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndE--k~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDE--KRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcH--HHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8655422 223333444444444543 222233333332 1233345555555666789999999998865
Q ss_pred CCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006012 295 GLSPKTATYAAVIT-ALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY 373 (664)
Q Consensus 295 g~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 373 (664)
.|.-...|..+. +|.+..-++-+.+++.-..+. ++.+...-|.......+.=.-..|+.-.+.+.+.+-.. |
T Consensus 181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~ 253 (557)
T KOG3785|consen 181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y 253 (557)
T ss_pred --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c
Confidence 366666665554 556777777777887776654 33234444544444433322233333344444332110 1
Q ss_pred HHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----HH
Q 006012 374 SLLIDAYANA-----GRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTH-----FY 443 (664)
Q Consensus 374 ~~li~~~~~~-----g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-----~~ 443 (664)
-.+.-+++. ..-+.|++++--+... -+.....++--|.+.+++.+|..+.+++.-. .|-.. ++
T Consensus 254 -~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~ 326 (557)
T KOG3785|consen 254 -PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVF 326 (557)
T ss_pred -hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHH
Confidence 112222222 2335555555444321 1122333444566667777777666654311 11111 11
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012 444 NVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTIT-WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE 522 (664)
Q Consensus 444 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 522 (664)
.++..-......+.-|.+.|+..-+.+...|... -..+..++.-..++++.+-+++.+..--...|...| .+..+.+.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHH
Confidence 1111112222334556666655555444333322 234444555556667776666666554322333333 35566667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHH-HHHHHHH
Q 006012 523 QERWEDVKRLLGNMRAQGLLPNVVTYT-TLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLA-LNSLINA 600 (664)
Q Consensus 523 ~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~ 600 (664)
.|++.+|+++|-.+....++ |..+|. .|.++|.+++.++.|.++ |.+..-..+..+ ...+.+-
T Consensus 406 tgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~--------------~lk~~t~~e~fsLLqlIAn~ 470 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDM--------------MLKTNTPSERFSLLQLIAND 470 (557)
T ss_pred hcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHH--------------HHhcCCchhHHHHHHHHHHH
Confidence 77777777777666544444 334443 344666777777666544 222221112222 2333455
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 006012 601 FGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 601 ~~~~g~~~~A~~~~~~m~~ 619 (664)
|.+.+.+--|-+.|+++..
T Consensus 471 CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 471 CYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHHHHHHHHhhhHHHc
Confidence 5666666555555555544
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.17 E-value=1.3e-05 Score=82.58 Aligned_cols=394 Identities=11% Similarity=0.113 Sum_probs=192.2
Q ss_pred CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMS 217 (664)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (664)
.++.+......|..++..=....+..+|...+......+-.+-+..+ .+-...++..-+--|..++..+++++|-+.+.
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la 193 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLA 193 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34555555555555554321122234555555555555655555554 22223445556777788888888888888887
Q ss_pred HHHHcC------CCCChhhHHHHHHHHHhcCCCChHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006012 218 KMRQDG------YHCDFINYSLVIQSLTRTNKIDSSL-LQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGM 290 (664)
Q Consensus 218 ~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~~~-~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~ 290 (664)
...... .+.+...|..+....++.-+....+ ...++..+...-..--...|++|.+.|.+.|.+++|.++|++
T Consensus 194 ~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyee 273 (835)
T KOG2047|consen 194 TVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEE 273 (835)
T ss_pred HhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 776432 1334445665555555443221110 122333332221112246899999999999999999999988
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc----------------C------ChHHHHHHHHHHHHcCC-----------CCCHHH
Q 006012 291 AQGVGLSPKTATYAAVITALSNS----------------G------RTIEAEAVFEELKESGL-----------KPRTKA 337 (664)
Q Consensus 291 ~~~~g~~~~~~~~~~li~~~~~~----------------g------~~~~A~~l~~~m~~~~~-----------~p~~~~ 337 (664)
....- ..+.-|..+.++|.+- + +++-...-|+.+..... +-++..
T Consensus 274 ai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~e 351 (835)
T KOG2047|consen 274 AIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEE 351 (835)
T ss_pred HHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHH
Confidence 76531 2222233333333221 1 12223333443332210 012222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHH
Q 006012 338 YNALLKGYVKMGYLKDAEFVVSEMERSGVLP------DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPN---SFIY 408 (664)
Q Consensus 338 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~---~~~~ 408 (664)
|..-+. +..|+..+-...+.+..+. +.| -...|..+.+.|-..|+++.|..+|++..+...+.- ..+|
T Consensus 352 W~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw 428 (835)
T KOG2047|consen 352 WHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVW 428 (835)
T ss_pred HHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHH
Confidence 222211 2234555556666665543 111 124566666677777777777777776655432211 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CC------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 006012 409 SRILAGYRDRGEWQRTFQVLKEMKSSG-----------VE------PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI 471 (664)
Q Consensus 409 ~~ll~~~~~~g~~~~a~~~~~~m~~~g-----------~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 471 (664)
..-...=.++.+++.|+.+.+.....- .+ .+...|...++.--..|-++....+++++++..+
T Consensus 429 ~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 429 CAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 555555566666666666665543210 00 1223444555555556666666666666665443
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 006012 472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT-TTYNIMINLLGE---QERWEDVKRLLGNMRA 538 (664)
Q Consensus 472 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~---~g~~~~a~~~~~~m~~ 538 (664)
......-|- ...+-.+.-++++++++++-+..=-.|++ ..|+..+.-+.+ ....+.|..+|++..+
T Consensus 509 aTPqii~Ny-AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 509 ATPQIIINY-AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred CCHHHHHHH-HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 221111111 11122333455555555544333212222 233333333221 2234555555555555
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=3.8e-06 Score=85.60 Aligned_cols=444 Identities=16% Similarity=0.111 Sum_probs=240.5
Q ss_pred HHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHH--HHHHHH--h
Q 006012 169 LIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSL--VIQSLT--R 240 (664)
Q Consensus 169 li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--ll~~~~--~ 240 (664)
=++.+.+.|++++|... ....+.+...+..=+-+.++.++|++|+.+.+.-.. ..+++. +=++|| +
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHH
Confidence 35677788888888766 444566677777777788888888888866544221 111111 234444 3
Q ss_pred cCCCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHH
Q 006012 241 TNKIDSSLLQKLYKEIECDKIE-LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSP-KTATYAAVITALSNSGRTIE 318 (664)
Q Consensus 241 ~g~~~~~~~~~l~~~~~~~~~~-~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~ 318 (664)
.+..|+++ ..++ +.. .|..+...-...+.+.|++++|+++|+.+.+.+.+- +..--..++.+-.
T Consensus 92 lnk~Deal--k~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a------- 157 (652)
T KOG2376|consen 92 LNKLDEAL--KTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA------- 157 (652)
T ss_pred cccHHHHH--HHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------
Confidence 44443332 3333 222 233355555666777788888888887776654221 1111111111100
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCH-------HHHHHHHHHHH
Q 006012 319 AEAVFEELKESGLKPRTKAYNA---LLKGYVKMGYLKDAEFVVSEMERSG-------VLPDE-------HTYSLLIDAYA 381 (664)
Q Consensus 319 A~~l~~~m~~~~~~p~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~g-------~~~~~-------~~~~~li~~~~ 381 (664)
+... +.+......| ..+|.. ....+...|++.+|+++++...+.+ -.-+. ..---|.-.+.
T Consensus 158 ~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 158 ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 0111 0122222222 223332 2334566788888888888773321 11111 11123445566
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHH----HHHHHHHHHhcCCHH-HHHHHHHHHHHCCC----------CCCHHHH-HH
Q 006012 382 NAGRWESARIVLKEMEVSHAKPNSFI----YSRILAGYRDRGEWQ-RTFQVLKEMKSSGV----------EPDTHFY-NV 445 (664)
Q Consensus 382 ~~g~~~~A~~l~~~m~~~~~~~~~~~----~~~ll~~~~~~g~~~-~a~~~~~~m~~~g~----------~~~~~~~-~~ 445 (664)
..|+.++|..++...++... +|... -|.++..-....-++ .++..++....... .-..... +.
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred HhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888877653 33322 222222211111111 11222221111000 0001111 22
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012 446 MIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHF--KCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQ 523 (664)
Q Consensus 446 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 523 (664)
++..|. +..+.+.++..... +..|. ..+.+++.... +...+.+|.+++...-+..-.-........+......
T Consensus 315 lL~l~t--nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 315 LLALFT--NKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHHh--hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc
Confidence 233322 22233333332222 11233 34444444332 2235778888888877765233355667777888899
Q ss_pred CCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHH
Q 006012 524 ERWEDVKRLLG--------NMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLAL 594 (664)
Q Consensus 524 g~~~~a~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~ 594 (664)
|+++.|.+++. .+.+.+. .+.+..+++..+.+.++-+.|..++. +|+..|..-.... +. ..++
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~----~Ai~~~~~~~t~s--~~l~~~~ 461 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLD----SAIKWWRKQQTGS--IALLSLM 461 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHH----HHHHHHHHhcccc--hHHHhHH
Confidence 99999999999 5544433 45666778888999998888887754 5555555433211 11 1234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 595 NSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 595 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
.-+...-.+.|+-++|..+++++.+.. ++|..+...++.+|++.+ .++|..+-+
T Consensus 462 ~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 462 REAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred HHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 444455567799999999999999853 678899999999999974 677776655
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.14 E-value=7.7e-07 Score=93.86 Aligned_cols=298 Identities=16% Similarity=0.176 Sum_probs=203.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----
Q 006012 273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM---- 348 (664)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~---- 348 (664)
..+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+.. |..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 3456789999999999775443 3334556677788999999999999999999987542 445555555555222
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012 349 -GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRW-ESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQ 426 (664)
Q Consensus 349 -g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 426 (664)
.+.+...++++++...- |.......+.-.+..-..+ ..+...+..+...|++ .+|+.+-..|....+..-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 25777888888887653 3322222222222221122 3445556666777754 345555556665555555556
Q ss_pred HHHHHHHC----C----------CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 006012 427 VLKEMKSS----G----------VEPDTH--FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD-TITWNTLIDCHFKCG 489 (664)
Q Consensus 427 ~~~~m~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g 489 (664)
++...... + -.|... ++.-+...|...|++++|++..++.+++. |+ +..|..-...|-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCC
Confidence 66555432 1 124443 44566778889999999999999999874 55 678888888999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHhcCCh
Q 006012 490 RYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVV------TY--TTLVDIYGQSGRF 561 (664)
Q Consensus 490 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~--~~li~~~~~~g~~ 561 (664)
++++|.+.++.....+ .-|...-+-....+.+.|+.++|.+++....+.+..|-.. +| .....+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999887 5677777888888999999999999999988776433221 22 4456789999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Q 006012 562 DDAIECLEGLSDQAVNAFRVMRT 584 (664)
Q Consensus 562 ~~A~~~~~~~~~~a~~~~~~m~~ 584 (664)
..|++.|.. ..+.|..+..
T Consensus 322 ~~ALk~~~~----v~k~f~~~~~ 340 (517)
T PF12569_consen 322 GLALKRFHA----VLKHFDDFEE 340 (517)
T ss_pred HHHHHHHHH----HHHHHHHHhc
Confidence 999987652 2334555554
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=5.8e-09 Score=97.82 Aligned_cols=225 Identities=9% Similarity=-0.046 Sum_probs=181.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006012 409 SRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC 488 (664)
Q Consensus 409 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 488 (664)
+.+.++|.+.|.+.+|.+.++.-.+. .|-+.||..|-..|.+..+...|+.++.+-++.- +-++.....+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56778899999999999988887765 5777788888999999999999999998888652 33444445566778888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 006012 489 GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECL 568 (664)
Q Consensus 489 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 568 (664)
++.++|.++++...+.. +.++.....+...|.-.++.+.|+.+++++.+.|+. ++..|+.+.-+|.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999998876 567777778888888899999999999999999987 8889999999999999999888775
Q ss_pred hhhHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 006012 569 EGLSDQAVNAFRVMRTDGLKPS--NLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVF 646 (664)
Q Consensus 569 ~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~ 646 (664)
+. ....--.|+ ...|-.+.......|++.-|.+.|+-.+..+ .-+...++.|.-.-.+.|+.++|.
T Consensus 382 ~R-----------Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 382 QR-----------ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred HH-----------HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHH
Confidence 42 222212233 3468888888888999999999999888743 335678888888888999999999
Q ss_pred HHHH
Q 006012 647 SSYL 650 (664)
Q Consensus 647 ~~~~ 650 (664)
.++.
T Consensus 450 sll~ 453 (478)
T KOG1129|consen 450 SLLN 453 (478)
T ss_pred HHHH
Confidence 9887
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.11 E-value=1.1e-07 Score=98.93 Aligned_cols=241 Identities=16% Similarity=0.169 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CC
Q 006012 371 HTYSLLIDAYANAGRWESARIVLKEMEVS-----H-AKPNSF-IYSRILAGYRDRGEWQRTFQVLKEMKSS-----G-VE 437 (664)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----~-~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g-~~ 437 (664)
.+...+...|...|++++|+.+++...+. | ..|... ..+.+...|...+++++|..+|+++... | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444566666666666666666655432 1 012222 2223555667777777777777776542 2 11
Q ss_pred C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC
Q 006012 438 P-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE-----GI-EPDT-ITWNTLIDCHFKCGRYDRAEELFEEMQER---GY 506 (664)
Q Consensus 438 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~ 506 (664)
| -..+++.|...|.+.|++++|...+++..+- |. .+.+ ..++.+...|+..+++++|..+++...+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 2345666667788888888777777665431 21 1222 23566777888899999999998876542 11
Q ss_pred CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHH
Q 006012 507 FP----CTTTYNIMINLLGEQERWEDVKRLLGNMRAQ----GLL--P-NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQA 575 (664)
Q Consensus 507 ~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a 575 (664)
.+ -..+++.|...|...|++++|.+++++++.. +.. + ....++.|...|.+.+++.+|.++|. ++
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~----~~ 435 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE----EA 435 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH----HH
Confidence 22 2457889999999999999999999988753 121 1 24567788889999999999998876 33
Q ss_pred HHHHHHHHHCCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 576 VNAFRVMRTDGL-KPSN-LALNSLINAFGEDQRDAEAFAVLQYMK 618 (664)
Q Consensus 576 ~~~~~~m~~~g~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 618 (664)
..+. ...|. .|+. .+|..|...|...|++++|+++.+...
T Consensus 436 ~~i~---~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIM---KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHH---HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3333 22232 2343 479999999999999999999988776
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.11 E-value=4.1e-07 Score=95.86 Aligned_cols=294 Identities=15% Similarity=0.153 Sum_probs=204.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--
Q 006012 306 VITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANA-- 383 (664)
Q Consensus 306 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-- 383 (664)
....+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.++. |..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 345678899999999999875543 3334556677788999999999999999999998643 444555555555222
Q ss_pred ---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 006012 384 ---GRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ-RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHA 459 (664)
Q Consensus 384 ---g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 459 (664)
.+.+....+|+++...- |.......+.-.+.....+. .+...+..+..+|+++ +++.+-..|.......-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 25788889999887654 33333322322222222333 3455666777888654 556666666655555555
Q ss_pred HHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012 460 MAAFDRMLSE----G----------IEPDTI--TWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQ 523 (664)
Q Consensus 460 ~~~~~~m~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 523 (664)
.+++...... + -.|+.. ++.-+...|...|++++|+++.++.+++. +-.+..|..-.+.+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 6666555432 1 134443 44566778889999999999999999986 44477888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC--CH----HHH--H
Q 006012 524 ERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP--SN----LAL--N 595 (664)
Q Consensus 524 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p--~~----~~~--~ 595 (664)
|++++|.+.++.....+.. |..+-+..+..+.++|++++|.+++. ...+.+..| |. ..| .
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~-----------~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTAS-----------LFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHH-----------hhcCCCCCcccCHHHHHHHHHHH
Confidence 9999999999999998755 78888888899999999999988754 122222122 11 133 4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 596 SLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 596 ~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
....+|.+.|++..|++.|....+
T Consensus 310 e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 457889999999999887776653
No 72
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.7e-07 Score=94.76 Aligned_cols=286 Identities=11% Similarity=0.012 Sum_probs=206.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006012 263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALL 342 (664)
Q Consensus 263 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 342 (664)
.+..+...-.+-+...+++.+..++++.+.+.. +++...+..-|.++...|+..+-.-+=.+|.+.- +-...+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 344455555666777788888888888887764 5677777777778888888887777777777652 33567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012 343 KGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ 422 (664)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 422 (664)
-.|.-.|+..+|.+.|.+....... =...|-.+...|+..|..|+|...+...-+.- +-...-+--+.--|.+.+..+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 8888888888888888887654222 24577788888888888888888877665431 111122233445567788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012 423 RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE----G--IEPDTITWNTLIDCHFKCGRYDRAEE 496 (664)
Q Consensus 423 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g--~~~~~~~~~~li~~~~~~g~~~~A~~ 496 (664)
.|.+.|.+..... +.|+...+-+.-...+.+.+.+|..+|+..+.. + ...-..+++.|..+|.+++++++|+.
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 8888888877653 567777777777777788888888888876621 1 01134457888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 497 LFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYG 556 (664)
Q Consensus 497 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 556 (664)
.+++.+... +-+..++.++.-.|...|+++.|.+.|.+... +.|+..+...++..+.
T Consensus 477 ~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 477 YYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 888888775 66788888888888888888888888888775 5777777776666443
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.07 E-value=7.4e-06 Score=86.16 Aligned_cols=383 Identities=13% Similarity=0.150 Sum_probs=205.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHH
Q 006012 259 DKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR-TKA 337 (664)
Q Consensus 259 ~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~ 337 (664)
..+.-|..+|..|.-+...+|+++.+.+.|++.... .--....|+.+-..+...|.-..|..++++-......|+ ...
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 344556666777776777777777777777665532 122345566666666777776667766666554332232 222
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCC
Q 006012 338 YNALLKGYV-KMGYLKDAEFVVSEMERS--GV--LPDEHTYSLLIDAYANAG-----------RWESARIVLKEMEVSHA 401 (664)
Q Consensus 338 ~~~li~~~~-~~g~~~~a~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~~l~~~m~~~~~ 401 (664)
+-..-..|. +.+..+++..+-.+.... +. ......|..+.-+|...- ...++++.+++..+.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 222222222 234555555555554441 11 123344444444444321 13455556666655442
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012 402 KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTL 481 (664)
Q Consensus 402 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 481 (664)
.|......+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+.....- ..|......-
T Consensus 476 -~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 -TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGK 553 (799)
T ss_pred -CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhh
Confidence 22233333334455566667777776666665445566666666666666667777777666655431 1111111222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC-------------C--------C-------CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012 482 IDCHFKCGRYDRAEELFEEMQER-------------G--------Y-------FPCTTTYNIMINLLGEQERWEDVKRLL 533 (664)
Q Consensus 482 i~~~~~~g~~~~A~~~~~~m~~~-------------~--------~-------~p~~~t~~~ll~~~~~~g~~~~a~~~~ 533 (664)
+..-..-++.++|+.....+..- | . .-...++..+..-... +.+.+..-.
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~ 631 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSEL 631 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhccccc
Confidence 22223356666666655444320 0 0 0000111111110000 000000000
Q ss_pred HHHHHCCCC--CC------HHHHHHHHHHHHhcCChHHHHHHHh-----------------------hhHHHHHHHHHHH
Q 006012 534 GNMRAQGLL--PN------VVTYTTLVDIYGQSGRFDDAIECLE-----------------------GLSDQAVNAFRVM 582 (664)
Q Consensus 534 ~~m~~~~~~--p~------~~~~~~li~~~~~~g~~~~A~~~~~-----------------------~~~~~a~~~~~~m 582 (664)
.+...-.. |+ ...|....+.+.+.+..++|..++. +...+|.+.|...
T Consensus 632 -~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 632 -KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred -ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 00100011 12 1244455566677777777654332 4455666666666
Q ss_pred HHCCCCCCHH-HHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 583 RTDGLKPSNL-ALNSLINAFGEDQRDAEAFA--VLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 583 ~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
.. +.|+.+ ...++...+.+.|+..-|.. ++..+.+.+ +-+...|..|+..+-+.|+.++|-..|.
T Consensus 711 l~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 711 LA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred Hh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 55 567654 77899999999999888888 999999954 4578999999999999999999999887
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5.5e-06 Score=80.73 Aligned_cols=241 Identities=13% Similarity=0.138 Sum_probs=139.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012 401 AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTH-FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWN 479 (664)
Q Consensus 401 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 479 (664)
++-|......+..++...|+.++|...|++.+.. .|+.. ......-.+.+.|+.+....+...+.... ..+...|-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 3445555556666666666666666666655433 12211 11111112234555555555555544321 12222333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012 480 TLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSG 559 (664)
Q Consensus 480 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 559 (664)
.-.......++++.|+.+-++.+..+ +-+...|-.-.+.+...++.++|.-.|+..+... +-+...|..|+.+|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhc
Confidence 33333344555666666655555544 3334444444455555666666666666555431 124556666666666666
Q ss_pred ChHHHHHHHh-------------------------hhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 006012 560 RFDDAIECLE-------------------------GLSDQAVNAFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEAFAV 613 (664)
Q Consensus 560 ~~~~A~~~~~-------------------------~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~ 613 (664)
++.+|.-.-+ ..-++|...+++-.+ +.|+-. ..+.+...|...|+.++++.+
T Consensus 383 ~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 383 RFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 6665543322 122344444444443 456643 677888899999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 614 LQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 614 ~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
+++.+. ..||....+.|.+.+...+.+.+|...|.
T Consensus 461 Le~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 461 LEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999988 68999999999999999999999998887
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=4.1e-08 Score=92.25 Aligned_cols=229 Identities=16% Similarity=0.132 Sum_probs=144.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 006012 303 YAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY-SLLIDAYA 381 (664)
Q Consensus 303 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~ 381 (664)
-+.+.++|.+.|.+.+|.+.|+.-++. .|-+.||-.|-+.|.+..+.+.|..++.+-.+. .|-.+|| .-+.+.+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 345667777777777777777766654 344556666777777777777777777776654 2333333 34555666
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 006012 382 NAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMA 461 (664)
Q Consensus 382 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 461 (664)
..++.++|.++|+...+.. +.++.....+...|.-.++.+.|+..++.+.+.|+ -+...|+.+.-+|.-.++++-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 6677777777777766543 34555555556666666777777777777777663 455666666666666666777776
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 462 AFDRMLSEGIEPD--TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (664)
Q Consensus 462 ~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 538 (664)
-|.+....--.|+ ...|-.|.......|++..|.+.|+-.+.++ ......+|.|.-.-.+.|+.++|..++.....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 6666664322222 3345555555566677777777777666655 34456666666666677777777777666654
No 76
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.02 E-value=5.3e-05 Score=78.18 Aligned_cols=361 Identities=10% Similarity=0.122 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006012 195 TYNALISACARNDDLEKALNLMSKMRQD-GYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIV 273 (664)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~ 273 (664)
.|-.-+.....+|+...-...|++.... -+.-....|...+.-....+-.. .+.++|..-.+ .++..-+--|.
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPe--ts~rvyrRYLk----~~P~~~eeyie 177 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPE--TSIRVYRRYLK----VAPEAREEYIE 177 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChH--HHHHHHHHHHh----cCHHHHHHHHH
Confidence 5555555555566666666665554432 12223334555554444444331 12344444432 23333455555
Q ss_pred HHHHcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCCC--HHHHHHHH
Q 006012 274 GFAKAGDASKAMRFLGMAQGV------GLSPKTATYAAVITALSNSGRTIE---AEAVFEELKESGLKPR--TKAYNALL 342 (664)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~~~~p~--~~~~~~li 342 (664)
.+++.+++++|.+.+...+.. ..+.+-..|.-+-+...++-+.-. ...+++.+... -+| ...|+.|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 555666666666555544321 112333344444444444332221 22223332221 122 23455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHhcC
Q 006012 343 KGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAG----------------------RWESARIVLKEMEVSH 400 (664)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------------------~~~~A~~l~~~m~~~~ 400 (664)
+.|.+.|.++.|..++++..+. ..++.-|+.+.+.|+.-. +++-...-|+.+....
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 6666666666666666555443 112233333333333211 1222223333332221
Q ss_pred -----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHhccCCHHHHHHHH
Q 006012 401 -----------AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEP------DTHFYNVMIDTFGKYNCLHHAMAAF 463 (664)
Q Consensus 401 -----------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~~ 463 (664)
-+.+...|..-+.. ..|+..+....+.+..+. +.| -...|..+.+.|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 12333444443332 345566667777776553 122 1245677778888888888888888
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----------CC------CCHHHHHHHHHHHHhc
Q 006012 464 DRMLSEGIEPD---TITWNTLIDCHFKCGRYDRAEELFEEMQERG-----------YF------PCTTTYNIMINLLGEQ 523 (664)
Q Consensus 464 ~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~------p~~~t~~~ll~~~~~~ 523 (664)
++..+...+-- ..+|..-..+-.++.+++.|+++.++...-- .+ -+...|...++.-...
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 88876543222 3445555555566777888888777664321 11 1233455555555666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012 524 ERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE 569 (664)
Q Consensus 524 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (664)
|-++....+++++++..+. ++.+.-.....+-...-++++.++++
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7777777888887776554 33333333333444555555555554
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.8e-05 Score=75.94 Aligned_cols=294 Identities=13% Similarity=0.051 Sum_probs=195.5
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 006012 267 LLNDVIVGFA--KAGDASKAMRFLGMAQGVG-LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTK-AYNALL 342 (664)
Q Consensus 267 ~~~~li~~~~--~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~li 342 (664)
.....+.+++ -.++-..|...+-.+.... ++-|+.....+.+.+...|+.++|...|++.... .|+.. ......
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya 273 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYA 273 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHH
Confidence 3333444443 3456666666555544332 4556778888889999999999999999887654 23222 222223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012 343 KGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ 422 (664)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 422 (664)
..+.+.|+.+....+...+.... +-...-|-.-.......++++.|+.+-++.++.+ +.+...+-.-...+...++.+
T Consensus 274 ~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 274 VLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHT 351 (564)
T ss_pred HHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchH
Confidence 33456777887777777766432 1123333333444456778888888888877654 334455555566778888899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHH
Q 006012 423 RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLI-DCHF-KCGRYDRAEELFEE 500 (664)
Q Consensus 423 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~ 500 (664)
+|.-.|+...... +-+..+|..|+..|...|.+.+|.-.-+...+. +..+..+.+.+. ..+. ....-++|.++++.
T Consensus 352 ~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 352 QAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 9988888877653 457788999999999999988888776665543 123444544442 2221 22335788888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012 501 MQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE 569 (664)
Q Consensus 501 m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (664)
-.... +.-....+.+...|...|..+.+..++++... ..||...-+.|.+.+...+.+.+|.+.|.
T Consensus 430 ~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 430 SLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred hhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 77654 22345667777888888999999999988876 46888888999999998888888887765
No 78
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.98 E-value=4.3e-06 Score=86.80 Aligned_cols=195 Identities=18% Similarity=0.283 Sum_probs=125.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 006012 341 LLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE 420 (664)
Q Consensus 341 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 420 (664)
.+.+......+.+|+.+++.+..... -..-|..+.+.|+..|+++.|.++|.+.- .++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 34445556678888888887776532 33456677788888888888888886542 34556778888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006012 421 WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEE 500 (664)
Q Consensus 421 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 500 (664)
|+.|.++-.+.. |.......|.+-..-+-+.|++.+|+++|-.+. .|+. -|.+|-+.|..+..+++..+
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 888887766643 334455566666666677788888877775443 3443 35677777777777777665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012 501 MQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE 569 (664)
Q Consensus 501 m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (664)
-.... -..|...+..-+...|++..|.+-|-+..+ |.+-+++|-..+.+++|.++-.
T Consensus 876 ~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 876 HHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHh
Confidence 42221 123455566666777777777766544432 4555666666666666666543
No 79
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=2.1e-05 Score=75.19 Aligned_cols=463 Identities=14% Similarity=0.096 Sum_probs=265.0
Q ss_pred CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006012 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSK 218 (664)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (664)
..|++++|..++..+.....++. .+.-.|.-.+.-.|.+.+|.......+.++..-..|...--+.|+-++-+.+-..
T Consensus 69 hLgdY~~Al~~Y~~~~~~~~~~~--el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~ 146 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKDDAPA--ELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSS 146 (557)
T ss_pred hhccHHHHHHHHHHHhccCCCCc--ccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 56899999999999987664333 4555566566667889999998888888887777888888888887777777666
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCC
Q 006012 219 MRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDV-IVGFAKAGDASKAMRFLGMAQGVGLS 297 (664)
Q Consensus 219 m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~g~~ 297 (664)
+... .-|..+...+ .+.+. .+ ..|..+|..+...+ |.-...|.- .-+|.+..-++-+.+++.--.+. ++
T Consensus 147 LqD~--~EdqLSLAsv--hYmR~-HY--QeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~p 216 (557)
T KOG3785|consen 147 LQDT--LEDQLSLASV--HYMRM-HY--QEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FP 216 (557)
T ss_pred Hhhh--HHHHHhHHHH--HHHHH-HH--HHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CC
Confidence 6542 1111111111 11111 11 22447777776543 333444443 34677888888888888776653 34
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHH
Q 006012 298 PKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM-----GYLKDAEFVVSEMERSGVLPDEHT 372 (664)
Q Consensus 298 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~ 372 (664)
.++...|.......+.=.-..|.+-..++.+.+-.. | -.+.-.++. ..-+.|.+++--+.+. -| ..
T Consensus 217 dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EA 287 (557)
T KOG3785|consen 217 DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EA 287 (557)
T ss_pred CcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--Hh
Confidence 456667766665555433333444444444432211 1 123333333 2346777777666553 22 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHH-HHH
Q 006012 373 YSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG-------EWQRTFQVLKEMKSSGVEPDTH-FYN 444 (664)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g-------~~~~a~~~~~~m~~~g~~~~~~-~~~ 444 (664)
--.|+--|.+.+++.+|..+.+++. +.++.-|-.-.-.+...| ...-|.+.|...-..+..-|.. --.
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence 3445666889999999998887764 222222222112222222 3445555555544444332221 123
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012 445 VMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE 524 (664)
Q Consensus 445 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 524 (664)
++...+.-..++++++-.++.+...-...|...+| +..+++..|.+.+|.++|-++....++.+..-...+.++|.+.+
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcC
Confidence 34444455566888888888777654444444444 67889999999999999988876665444444445567788888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012 525 RWEDVKRLLGNMRAQGLLPNVVTY-TTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE 603 (664)
Q Consensus 525 ~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 603 (664)
..+.|.+++-++.. ..+.... -.+..-|-+++++--|-+. |+.+.. ..|++.-|.
T Consensus 443 kP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKA-----------Fd~lE~--lDP~pEnWe-------- 498 (557)
T KOG3785|consen 443 KPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKA-----------FDELEI--LDPTPENWE-------- 498 (557)
T ss_pred CchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHh-----------hhHHHc--cCCCccccC--------
Confidence 88888776654432 2233333 3344667788877766655 444444 467777773
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006012 604 DQRDAEAFAVLQYMKENGLKPD-VVTYTTLMKALIRVDKFHKVFSSYLFFN 653 (664)
Q Consensus 604 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~a~~~~g~~~~A~~~~~~~~ 653 (664)
|+-.....+|+.+....-.|- ..+..-++..+...+ -.+++-..+.++
T Consensus 499 -GKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~-nsq~E~mikvvr 547 (557)
T KOG3785|consen 499 -GKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKP-NSQCEFMIKVVR 547 (557)
T ss_pred -CccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCC-CchHHHHHHHHH
Confidence 444444455665554333332 234444554443333 233443444333
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.96 E-value=1.2e-06 Score=87.42 Aligned_cols=232 Identities=13% Similarity=-0.011 Sum_probs=146.7
Q ss_pred CCHHHHHHHHHHHHhcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 006012 384 GRWESARIVLKEMEVSH-AKP--NSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAM 460 (664)
Q Consensus 384 g~~~~A~~l~~~m~~~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 460 (664)
+..+.++.-+.++.... ..| ....|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 35566666666665432 111 13456666777778888888888888877764 446778888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012 461 AAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG 540 (664)
Q Consensus 461 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 540 (664)
..|+...+.. +-+...|..+..++...|++++|.+.|++..+.+ |+..........+...++.++|.+.+.+.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8888888754 2346677778888888899999999999888764 332222222223445678899999887655432
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 541 LLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 541 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
.|+... ........|+...+ +.++. +.+.++.-.+ +.| ....|..+...+.+.|++++|+..|++..+
T Consensus 196 -~~~~~~---~~~~~~~lg~~~~~-~~~~~----~~~~~~~~~~--l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 196 -DKEQWG---WNIVEFYLGKISEE-TLMER----LKAGATDNTE--LAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred -CccccH---HHHHHHHccCCCHH-HHHHH----HHhcCCCcHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 223221 12233345555443 12111 1100100000 011 235788999999999999999999999998
Q ss_pred CCCCCCHHHHHH
Q 006012 620 NGLKPDVVTYTT 631 (664)
Q Consensus 620 ~g~~p~~~~~~~ 631 (664)
.+ +||.+-+..
T Consensus 265 ~~-~~~~~e~~~ 275 (296)
T PRK11189 265 NN-VYNFVEHRY 275 (296)
T ss_pred hC-CchHHHHHH
Confidence 43 446655554
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.95 E-value=1e-05 Score=85.10 Aligned_cols=125 Identities=15% Similarity=0.077 Sum_probs=102.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG 521 (664)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 521 (664)
.|......+.+.+..++|...+.+..+.. ......|......+...|..++|.+.|.....-+ +.++....++...+.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34455667788888888888888877643 3456667777778888999999999999998876 556778889999999
Q ss_pred hcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012 522 EQERWEDVKR--LLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE 569 (664)
Q Consensus 522 ~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (664)
+.|+..-+.. ++.++.+.+.. +...|-.+...+-+.|+.+.|.++|+
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHH
Confidence 9998877777 99999997644 78999999999999999999999876
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.95 E-value=4.5e-05 Score=79.46 Aligned_cols=295 Identities=16% Similarity=0.217 Sum_probs=184.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 006012 199 LISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKA 278 (664)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~ 278 (664)
-|.+..+...+.+|+.+++.+..+. .-.-.|..+...|+..|++ .+++++|-+. ..++..|.+|.+.
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~df--e~ae~lf~e~---------~~~~dai~my~k~ 804 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDF--EIAEELFTEA---------DLFKDAIDMYGKA 804 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhH--HHHHHHHHhc---------chhHHHHHHHhcc
Confidence 3445567788888998888887763 3344577788888888887 4455666543 2467789999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012 279 GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVV 358 (664)
Q Consensus 279 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 358 (664)
|+++.|.++-++.. |.......|.+-..-+-+.|++.+|.++|-.+. .|+ ..|.+|-+.|..+..+++.
T Consensus 805 ~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred ccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHH
Confidence 99999998876654 334456677777888889999999999885543 244 3678888999888888877
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------
Q 006012 359 SEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEM------- 431 (664)
Q Consensus 359 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m------- 431 (664)
++---. .-..|...+..-|-..|+...|..-|-+... |.+.++.|...+.|++|..+-+.-
T Consensus 874 ~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k 941 (1636)
T KOG3616|consen 874 EKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEK 941 (1636)
T ss_pred HHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHH
Confidence 664321 1234556677778888888888877765432 555667777777777776554321
Q ss_pred -------HHCCCCCCHH------HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006012 432 -------KSSGVEPDTH------FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELF 498 (664)
Q Consensus 432 -------~~~g~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 498 (664)
+..|-..-+. ....-++..+..+.++-|.++-+...+.. .+.+. -.+..-+-..|++++|-+.+
T Consensus 942 ~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~vh--lk~a~~ledegk~edaskhy 1018 (1636)
T KOG3616|consen 942 HVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEVH--LKLAMFLEDEGKFEDASKHY 1018 (1636)
T ss_pred HHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccch--hHHhhhhhhccchhhhhHhh
Confidence 1111000000 01112233344455555555554444432 22222 22333456789999999999
Q ss_pred HHHHHCCCCCCHHHHHHHH-----HHHHhcC-CHHHHHHHHH
Q 006012 499 EEMQERGYFPCTTTYNIMI-----NLLGEQE-RWEDVKRLLG 534 (664)
Q Consensus 499 ~~m~~~~~~p~~~t~~~ll-----~~~~~~g-~~~~a~~~~~ 534 (664)
-+.++.+ .- ..||...+ --+.+.| +.++|..+|-
T Consensus 1019 veaikln-ty-nitwcqavpsrfd~e~ir~gnkpe~av~mfi 1058 (1636)
T KOG3616|consen 1019 VEAIKLN-TY-NITWCQAVPSRFDAEFIRAGNKPEEAVEMFI 1058 (1636)
T ss_pred HHHhhcc-cc-cchhhhcccchhhHHHHHcCCChHHHHHHhh
Confidence 8888765 11 23333221 2244566 6888887773
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.92 E-value=1.4e-06 Score=86.90 Aligned_cols=225 Identities=14% Similarity=0.020 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012 279 GDASKAMRFLGMAQGVG-LSPK--TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAE 355 (664)
Q Consensus 279 g~~~~A~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 355 (664)
+..+.++.-+.++.... ..|+ ...|..+...+.+.|+.++|...|++..+... .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555321 1111 34455666666666777777666666665432 24566666666666677777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012 356 FVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSG 435 (664)
Q Consensus 356 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 435 (664)
..|+...+.... +..+|..+...+...|++++|.+.|+...+.. |+..........+...++.++|...|.......
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 666666654322 34556666666666667777766666666543 222111111122334456666666665543221
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC---CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006012 436 VEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE---GI---EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC 509 (664)
Q Consensus 436 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 509 (664)
.++...+ .+... ..|+...+ ..+..+.+. .. +.....|..+...+.+.|++++|...|++..+.+ +|+
T Consensus 196 -~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 196 -DKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred -CccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 2221111 12211 22333222 233333211 00 1123456666677777777777777777777655 334
Q ss_pred HHHH
Q 006012 510 TTTY 513 (664)
Q Consensus 510 ~~t~ 513 (664)
-+-+
T Consensus 270 ~~e~ 273 (296)
T PRK11189 270 FVEH 273 (296)
T ss_pred HHHH
Confidence 3333
No 84
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=1.3e-05 Score=84.46 Aligned_cols=400 Identities=15% Similarity=0.111 Sum_probs=202.5
Q ss_pred hHHHHHHHH--HHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 006012 162 YELLYSILI--HALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLT 239 (664)
Q Consensus 162 ~~~~~~~li--~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 239 (664)
++.+...++ +.|...|+.+.|++-.+-. .+...|..|.+.|++..+++-|.-.+-.|...-
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~I-kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aR---------------- 787 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFI-KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNAR---------------- 787 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHH-hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhh----------------
Confidence 345555665 4678889999998763332 244589999999999999999988888886521
Q ss_pred hcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 006012 240 RTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEA 319 (664)
Q Consensus 240 ~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 319 (664)
..+.+.+..+.+-+ .-..........|.+++|+.+|++-.+ |..|=..|-..|++++|
T Consensus 788 ---------gaRAlR~a~q~~~e----~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA 845 (1416)
T KOG3617|consen 788 ---------GARALRRAQQNGEE----DEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEA 845 (1416)
T ss_pred ---------hHHHHHHHHhCCcc----hhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHH
Confidence 00111111111100 000011112233455555555544433 22222333444555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----------HCC---------CCCCHHHHHHHHHHH
Q 006012 320 EAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEME----------RSG---------VLPDEHTYSLLIDAY 380 (664)
Q Consensus 320 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~----------~~g---------~~~~~~~~~~li~~~ 380 (664)
.++-+.--+..+ ..||......+-..++++.|++.|++.. ... -..|...|.-....+
T Consensus 846 ~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYl 922 (1416)
T KOG3617|consen 846 FEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYL 922 (1416)
T ss_pred HHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHH
Confidence 444433221111 1233333333333444444444333211 000 012334444444445
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 006012 381 ANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAM 460 (664)
Q Consensus 381 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 460 (664)
-..|+.+.|+.+|...+. |.++++..|-.|+.++|-++-++ .-|......+...|-..|++.+|.
T Consensus 923 ES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av 987 (1416)
T KOG3617|consen 923 ESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAV 987 (1416)
T ss_pred hcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHH
Confidence 556777777777776653 55667777778888888777665 346677777888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH-------------cC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006012 461 AAFDRMLSEGIEPDTITWNTLIDCHFK-------------CG--RYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQER 525 (664)
Q Consensus 461 ~~~~~m~~~g~~~~~~~~~~li~~~~~-------------~g--~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 525 (664)
..|.+... +..-|..|-. .| +.-.|-++|++. |. -+...+..|-++|.
T Consensus 988 ~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm 1050 (1416)
T KOG3617|consen 988 KFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGM 1050 (1416)
T ss_pred HHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcc
Confidence 88876542 2222222111 11 122222333322 10 11122334555666
Q ss_pred HHHHHHHHH--------HHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHh--hhHHHHHHH-----------HHHH
Q 006012 526 WEDVKRLLG--------NMRAQ--GLLPNVVTYTTLVDIYGQSGRFDDAIECLE--GLSDQAVNA-----------FRVM 582 (664)
Q Consensus 526 ~~~a~~~~~--------~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~~a~~~-----------~~~m 582 (664)
+.+|+++-- +++.. ....|+...+--.+-++...++++|..++- ...+.|+.+ |.+|
T Consensus 1051 ~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~ 1130 (1416)
T KOG3617|consen 1051 IGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAEL 1130 (1416)
T ss_pred hHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHh
Confidence 655554432 11222 233466777766777777777777777653 122222221 1122
Q ss_pred HH--CCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 006012 583 RT--DGLKPSN----LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHK 644 (664)
Q Consensus 583 ~~--~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~ 644 (664)
.. +.-.|+. .....+...|.+.|.+..|-+-|.++-. + ...++++.++|+.++
T Consensus 1131 mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd---K------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1131 MTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD---K------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred cCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh---H------HHHHHHHHhcCCcce
Confidence 11 1112222 2456667777777777777765554422 1 234556666666554
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=0.00019 Score=75.99 Aligned_cols=461 Identities=14% Similarity=0.171 Sum_probs=253.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-------------hCCCCCCHHHHHHHHHHHHH
Q 006012 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-------------SQRQRLTPLTYNALISACAR 205 (664)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-------------~~~~~~~~~~~~~li~~~~~ 205 (664)
..|+.+.|++-.+.+.. ..+|..|.+++.+..+++-|... .+..+.+...=-........
T Consensus 740 tiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAie 812 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIE 812 (1416)
T ss_pred EeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHH
Confidence 35778888877766532 35789999999998888877654 00011110111112222357
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006012 206 NDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAM 285 (664)
Q Consensus 206 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 285 (664)
.|..++|..+|++.++.+ .+=+.|-..|.++++. ++-+.-. .+.. ..+|-.-..-+-..++.+.|+
T Consensus 813 LgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~--eiAE~~D--RiHL-r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAF--EIAETKD--RIHL-RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHH--HHHhhcc--ceeh-hhhHHHHHHHHHhhccHHHHH
Confidence 799999999999988743 2333445566665443 2222111 1111 223444444455567777777
Q ss_pred HHHHHHH----------hCC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006012 286 RFLGMAQ----------GVG---------LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV 346 (664)
Q Consensus 286 ~~~~~~~----------~~g---------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 346 (664)
+.|++.. ... -..|...|......+-..|+.+.|+.+|..... |-.+++..|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 7776421 111 123444455556666667888888888876653 566788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-------
Q 006012 347 KMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG------- 419 (664)
Q Consensus 347 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g------- 419 (664)
-.|+.++|-++-++- -|......|.+.|-..|++.+|...|.+.+. +...|+.|-.++
T Consensus 950 ~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred eccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHH
Confidence 899999998886653 2667778899999999999999999987653 333333332222
Q ss_pred --------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH--------HHH--CCCCCCHHHHHHH
Q 006012 420 --------EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDR--------MLS--EGIEPDTITWNTL 481 (664)
Q Consensus 420 --------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~--~g~~~~~~~~~~l 481 (664)
+.-.|-.+|++. |.. ....+..|-+.|.+.+|+++--+ ++. .....|....+.-
T Consensus 1015 lal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 122222333321 110 12233456667777666654211 111 1223455666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH----------CC----------------CCCCHH----HHHHHHHHHHhcCCHHHHHH
Q 006012 482 IDCHFKCGRYDRAEELFEEMQE----------RG----------------YFPCTT----TYNIMINLLGEQERWEDVKR 531 (664)
Q Consensus 482 i~~~~~~g~~~~A~~~~~~m~~----------~~----------------~~p~~~----t~~~ll~~~~~~g~~~~a~~ 531 (664)
.+-++...++++|..++-...+ +| -.|+.. ....+...|.++|.+..|-+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 6666666777776665543221 11 123333 34455567777777766554
Q ss_pred HHHHH----------HHCC-----------------------------CCCCHHHHHHHHHHHHhcCChH------HHHH
Q 006012 532 LLGNM----------RAQG-----------------------------LLPNVVTYTTLVDIYGQSGRFD------DAIE 566 (664)
Q Consensus 532 ~~~~m----------~~~~-----------------------------~~p~~~~~~~li~~~~~~g~~~------~A~~ 566 (664)
-|.+. .+.| .+-++.+...++.-|.|..-++ ++-.
T Consensus 1167 KfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cA 1246 (1416)
T KOG3617|consen 1167 KFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCA 1246 (1416)
T ss_pred HHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHH
Confidence 44322 1111 2334444444444444332222 2111
Q ss_pred HHh-----------hhHHHHHHHHHHHHHCCCCCCHHHHHHH----------HHHHH-hcCCHHHHHHHHHHHHHCCCCC
Q 006012 567 CLE-----------GLSDQAVNAFRVMRTDGLKPSNLALNSL----------INAFG-EDQRDAEAFAVLQYMKENGLKP 624 (664)
Q Consensus 567 ~~~-----------~~~~~a~~~~~~m~~~g~~p~~~~~~~l----------i~~~~-~~g~~~~A~~~~~~m~~~g~~p 624 (664)
.++ |..++|-..+.+...+.. ....++.| +.... -..+..+.++-.+.|.+..+-|
T Consensus 1247 qiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~--~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld 1324 (1416)
T KOG3617|consen 1247 QIEIEELQTYDKAMGALEEAAKCLLKAEQKNM--STTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILD 1324 (1416)
T ss_pred HhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCC
Confidence 111 334444444444443221 11123322 11111 1236666777777777765444
Q ss_pred C----HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 006012 625 D----VVTYTTLMKALIRVDKFHKVFSSYLFFNI 654 (664)
Q Consensus 625 ~----~~~~~~l~~a~~~~g~~~~A~~~~~~~~~ 654 (664)
| ...|..|+..+.+..++..|-++++-++.
T Consensus 1325 ~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~ 1358 (1416)
T KOG3617|consen 1325 DIIRCTRLFALLIEDHVSRKNYKPAYRALTELQK 1358 (1416)
T ss_pred CcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhh
Confidence 3 46788999999999999999999886543
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.89 E-value=1.8e-05 Score=81.78 Aligned_cols=208 Identities=10% Similarity=0.013 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHH
Q 006012 407 IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI-EPDT--ITWNTLID 483 (664)
Q Consensus 407 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~--~~~~~li~ 483 (664)
....+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+... .++. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 33444556666667777777776666653 33455566666667777777777777776665321 1222 23445666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHHCCC-CCCHHHHHHHHHHH
Q 006012 484 CHFKCGRYDRAEELFEEMQERGY-FPCTTTY-N--IMINLLGEQERWEDVKRL---LGNMRAQGL-LPNVVTYTTLVDIY 555 (664)
Q Consensus 484 ~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~-~--~ll~~~~~~g~~~~a~~~---~~~m~~~~~-~p~~~~~~~li~~~ 555 (664)
.+...|++++|..++++...... .+..... + .++.-+...|..+.+.+. ......... ............++
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 77777888888888877654321 1112111 1 222233333332222222 111111100 11122223566777
Q ss_pred HhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 556 GQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 556 ~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
...|+.+.|...++.....+.. |...+... ..........++...|+.++|.+.+.+...
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASS----ADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhc----cCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888877654433322 10011111 122233344556788999999999888875
No 87
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=3e-05 Score=83.60 Aligned_cols=353 Identities=14% Similarity=0.134 Sum_probs=176.1
Q ss_pred HHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006012 250 QKLYKEIECDKI--ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVG--LSPKTATYAAVITALSNSGRTIEAEAVFEE 325 (664)
Q Consensus 250 ~~l~~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 325 (664)
+++.+..+.-++ ..|..-.+..+.++...+-..+-+++++++.-.. +.-+...-|.||-...+.. .....+..++
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~r 1045 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHH
Confidence 345555554433 2355566667777777777777777777766321 1112222333333333332 2233333333
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH
Q 006012 326 LKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS 405 (664)
Q Consensus 326 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 405 (664)
+..-+. |+ +...+...+-+++|..+|+... .+..+.+.||.- .+..+.|.+.-++. ..+
T Consensus 1046 LdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~------n~p 1104 (1666)
T KOG0985|consen 1046 LDNYDA-PD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERC------NEP 1104 (1666)
T ss_pred hccCCc-hh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhh------CCh
Confidence 332211 11 2333444455666666666543 244444444432 34455555444433 234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 406 FIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCH 485 (664)
Q Consensus 406 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 485 (664)
..|+.+..+-.+.|...+|++-|-+ ..|+..|..+++...+.|.+++..+.+....+...+|.+. +.||-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 5667777777777777666665544 3456667777777777777777777776666655444433 4566677
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006012 486 FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAI 565 (664)
Q Consensus 486 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 565 (664)
++.++..+-.++.. .|+......+.+-|...+.++.|.-++... .-|..|...+...|++..|.
T Consensus 1177 Akt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHH
Confidence 77776665554431 455555555555566666655555544432 22333333333444443333
Q ss_pred HHHh-------------hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 006012 566 ECLE-------------GLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTT 631 (664)
Q Consensus 566 ~~~~-------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ 631 (664)
+.-+ ...+.-.--+.+|...++..-..-...++.-|-..|-+++.+.+++..+ |++- ....|.-
T Consensus 1241 D~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTE 1318 (1666)
T KOG0985|consen 1241 DAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTE 1318 (1666)
T ss_pred HHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHH
Confidence 2211 0000000001222222222333445667777777777777777665443 2222 1233444
Q ss_pred HHHHHHhcCCHhHHHHHHHH
Q 006012 632 LMKALIRVDKFHKVFSSYLF 651 (664)
Q Consensus 632 l~~a~~~~g~~~~A~~~~~~ 651 (664)
|.-.|.+ =+.++.++.+++
T Consensus 1319 LaiLYsk-ykp~km~EHl~L 1337 (1666)
T KOG0985|consen 1319 LAILYSK-YKPEKMMEHLKL 1337 (1666)
T ss_pred HHHHHHh-cCHHHHHHHHHH
Confidence 4444443 234455554443
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.85 E-value=2.7e-05 Score=80.51 Aligned_cols=298 Identities=12% Similarity=0.045 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006012 267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGL-SPKT-ATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG 344 (664)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 344 (664)
.|..+...+...|+.+++.+.+....+... ..+. .........+...|++++|.+++++..+... .+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHH
Confidence 334444444455555555555544433211 1121 1122223344556677777777766665421 23333331 112
Q ss_pred HHh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006012 345 YVK----MGYLKDAEFVVSEMERSGVLPD-EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG 419 (664)
Q Consensus 345 ~~~----~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g 419 (664)
+.. .+..+.+.+.++.. ....|+ ......+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 222 23344444444331 111222 2333445556666777777777777776654 334555666666777777
Q ss_pred CHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHHcCCHH
Q 006012 420 EWQRTFQVLKEMKSSGV-EPDT--HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI-EPDTITW-N--TLIDCHFKCGRYD 492 (664)
Q Consensus 420 ~~~~a~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~-~--~li~~~~~~g~~~ 492 (664)
++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 77777777776655321 1222 2344566667777777777777777653221 1111111 1 2222223333322
Q ss_pred HHHHH--H-HHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------C--CHHHHHHHHHHHHhcCC
Q 006012 493 RAEEL--F-EEMQERG-YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL------P--NVVTYTTLVDIYGQSGR 560 (664)
Q Consensus 493 ~A~~~--~-~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~------p--~~~~~~~li~~~~~~g~ 560 (664)
.+.+. . ....... .............++...|+.++|..++..+...... . .........-++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 22222 1 1111110 0111122224566677888888888888887663211 0 11222233344668889
Q ss_pred hHHHHHHHh
Q 006012 561 FDDAIECLE 569 (664)
Q Consensus 561 ~~~A~~~~~ 569 (664)
.++|.+.+.
T Consensus 323 ~~~A~~~L~ 331 (355)
T cd05804 323 YATALELLG 331 (355)
T ss_pred HHHHHHHHH
Confidence 999888765
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.85 E-value=4.2e-06 Score=75.61 Aligned_cols=199 Identities=12% Similarity=-0.002 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006012 267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV 346 (664)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 346 (664)
+.-.|.-.|...|+...|..-+++.++.+ +.+..+|..+...|-+.|+.+.|.+-|++..+.... +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34456678999999999999999998865 445778999999999999999999999998876433 6678888999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012 347 KMGYLKDAEFVVSEMERSGVLP-DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTF 425 (664)
Q Consensus 347 ~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 425 (664)
..|++++|.+.|++......-+ -..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999987652221 24677778888888899999999999887764 334456667777888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 006012 426 QVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE 469 (664)
Q Consensus 426 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 469 (664)
..++.....+. ++..+.-..|..--..|+.+.+-+.-..+.+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88888777664 77777777777777777777776666555543
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.81 E-value=6.1e-06 Score=74.58 Aligned_cols=194 Identities=14% Similarity=0.059 Sum_probs=102.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006012 411 ILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR 490 (664)
Q Consensus 411 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 490 (664)
+.-.|...|+...|.+-+++.++.. +.+..++..+...|.+.|+.+.|.+.|+...+.. +.+..+.|....-+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 3445555555555555555555543 3344555555555666666666666666655543 2234445555555566666
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012 491 YDRAEELFEEMQERG-YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE 569 (664)
Q Consensus 491 ~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (664)
+++|...|++....- ..--..+|..+.-+..+.|+.+.|.+.+++..+.... .+.+...+.+...+.|++..|...++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 666666666655431 1122345555555555666666666666666654322 23445555555666666665554422
Q ss_pred hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 570 GLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 570 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
.....+ .++..+....|..-...|+.+.|.++=.++..
T Consensus 198 -----------~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 198 -----------RYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred -----------HHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 222222 25555555555555556666666555554444
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=0.00031 Score=72.17 Aligned_cols=372 Identities=12% Similarity=0.091 Sum_probs=191.2
Q ss_pred ccCCHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCCChHHHHHH
Q 006012 175 RSEKLYEAFLLSQRQ-RLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLT-RTNKIDSSLLQKL 252 (664)
Q Consensus 175 ~~~~~~~A~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~~~~~~l 252 (664)
+.++.++|.....+. +.+..+...-...+.+.|++++|+.+|+.+.+.+. ++ +..-+.+-+ ..+. + ...
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd---~d~~~r~nl~a~~a---~--l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DD---QDEERRANLLAVAA---A--LQV 161 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ch---HHHHHHHHHHHHHH---h--hhH
Confidence 455666665553322 22333444445566677777777777777766542 11 111111100 0000 0 000
Q ss_pred HHHHHhCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhCCC------CCC---HH-----HHHHHHHHHHhcCC
Q 006012 253 YKEIECDKIELDGQLLNDV---IVGFAKAGDASKAMRFLGMAQGVGL------SPK---TA-----TYAAVITALSNSGR 315 (664)
Q Consensus 253 ~~~~~~~~~~~d~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~g~------~~~---~~-----~~~~li~~~~~~g~ 315 (664)
..+......+ ..+|..+ ...+...|++.+|+++++...+.+. ..+ .. .-..+.-++-..|+
T Consensus 162 -~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 162 -QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred -HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 0111111122 2233333 3345567888888888877732110 011 11 11223345566788
Q ss_pred hHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHH-HHHHHHHHHHHC-----------CCCCCHHHHHHHHHH
Q 006012 316 TIEAEAVFEELKESGLKPRT----KAYNALLKGYVKMGYLK-DAEFVVSEMERS-----------GVLPDEHTYSLLIDA 379 (664)
Q Consensus 316 ~~~A~~l~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~-~a~~~~~~m~~~-----------g~~~~~~~~~~li~~ 379 (664)
.++|..+|...++.... |. ..-|.|+..-....-++ .+...++..... .-.-....-+.++..
T Consensus 240 t~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred hHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887776543 43 22333333221111111 111111111100 000011111223333
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 006012 380 YANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRD--RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLH 457 (664)
Q Consensus 380 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 457 (664)
|. +..+.+.++...... ..|. ..+..++..+.+ ...+..+.+++...-+....-..++.-.++......|+++
T Consensus 319 ~t--nk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 319 FT--NKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred Hh--hhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 32 233334333333221 1222 334444443332 2246677777777665532223456666777888999999
Q ss_pred HHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHH----Hhc
Q 006012 458 HAMAAFD--------RMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER--GYFPCTTTYNIMINLL----GEQ 523 (664)
Q Consensus 458 ~A~~~~~--------~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~----~~~ 523 (664)
.|.+++. .+.+.+..|-. -.++...|.+.++-+.|..++.+.... .-.+.....+.++.-. .+.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 9999999 55555555544 455677788888877788888777542 1122334444444433 467
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006012 524 ERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIEC 567 (664)
Q Consensus 524 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 567 (664)
|+-++|..+++++.+.+ .+|..+...++.+|++. +++.|..+
T Consensus 472 G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred CchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 99999999999999864 46899999999999987 56666654
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=4.5e-05 Score=71.35 Aligned_cols=297 Identities=13% Similarity=0.079 Sum_probs=173.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006012 264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAA-VITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALL 342 (664)
Q Consensus 264 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 342 (664)
+....+.|..+|....++..|-+.++++... .|...-|.. -...+.+.+.+.+|+++...|... ++...-..-+
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqL 117 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQL 117 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHH
Confidence 3444555666777777777777777777653 355444443 245666777778888877777642 2211111111
Q ss_pred H--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 006012 343 K--GYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE 420 (664)
Q Consensus 343 ~--~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 420 (664)
. .....+++..+..++++....| +..+.+.......+.|+++.|.+-|+...+.+.--....|+..+ +..+.++
T Consensus 118 qaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~q 193 (459)
T KOG4340|consen 118 QAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQ 193 (459)
T ss_pred HHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhh
Confidence 1 2234566777777777665432 34444444444567788888888887777655444455565444 4455677
Q ss_pred HHHHHHHHHHHHHCCCC-------------CCH--------HHHHHHHH-------HHhccCCHHHHHHHHHHHHH-CCC
Q 006012 421 WQRTFQVLKEMKSSGVE-------------PDT--------HFYNVMID-------TFGKYNCLHHAMAAFDRMLS-EGI 471 (664)
Q Consensus 421 ~~~a~~~~~~m~~~g~~-------------~~~--------~~~~~li~-------~~~~~g~~~~A~~~~~~m~~-~g~ 471 (664)
++.|++...++.++|++ ||+ ..-+.++. .+.+.|+.+.|.+.+-.|.- ...
T Consensus 194 yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~ 273 (459)
T KOG4340|consen 194 YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEE 273 (459)
T ss_pred HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccc
Confidence 77788877777776542 121 11233333 34567888888888877752 222
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 006012 472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PNVVTYTT 550 (664)
Q Consensus 472 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ 550 (664)
..|.+|...+.-. -..+++-+..+-+.-+...+ +-...||..++-.||+..-++.|-+++.+-...-.+ .+...|+.
T Consensus 274 elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L 351 (459)
T KOG4340|consen 274 ELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL 351 (459)
T ss_pred cCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH
Confidence 3455555443322 12455666666666666665 344778888888999999999888887654332111 23444443
Q ss_pred HHHHHHhcCChHHHHHHHhhh
Q 006012 551 LVDIYGQSGRFDDAIECLEGL 571 (664)
Q Consensus 551 li~~~~~~g~~~~A~~~~~~~ 571 (664)
|=.........++|.+-++++
T Consensus 352 LdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 352 LDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHhCCCCHHHHHHHHHHH
Confidence 333333455667776655543
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=6.3e-05 Score=76.30 Aligned_cols=383 Identities=13% Similarity=0.035 Sum_probs=230.4
Q ss_pred CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALN 214 (664)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 214 (664)
+.++++.|...|..++... |.+..+|+.-..+|++.|++.+|..- ....+.-+..|.....++.-.|++++|+.
T Consensus 14 s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 5689999999999998876 66788999999999999999998865 33445557899999999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHH-HHHHHHHHHhCC---CCCCHHHHHHHHHHH----------HHcCC
Q 006012 215 LMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSL-LQKLYKEIECDK---IELDGQLLNDVIVGF----------AKAGD 280 (664)
Q Consensus 215 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~-~~~l~~~~~~~~---~~~d~~~~~~li~~~----------~~~g~ 280 (664)
-|.+-.+.. +-|...++-+.++.......+... .-.++..+.... .......|..++..+ ...-.
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r 170 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR 170 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence 999987763 334445555554441110000000 000111110000 000001111121111 11001
Q ss_pred HHHHHHHHHH-----HHhC-------CCCC------------C----------HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006012 281 ASKAMRFLGM-----AQGV-------GLSP------------K----------TATYAAVITALSNSGRTIEAEAVFEEL 326 (664)
Q Consensus 281 ~~~A~~~~~~-----~~~~-------g~~~------------~----------~~~~~~li~~~~~~g~~~~A~~l~~~m 326 (664)
+..|.-.+.. .... +..| | ..-...+.+...+..+++.|.+-+...
T Consensus 171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1111111100 0000 0011 0 112445666677777778888888777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHhc
Q 006012 327 KESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSL-------LIDAYANAGRWESARIVLKEMEVS 399 (664)
Q Consensus 327 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-------li~~~~~~g~~~~A~~l~~~m~~~ 399 (664)
.+.. -+..-++....+|...|...++...-....+.|-. ...-|+. +..+|.+.++++.++..|.+....
T Consensus 251 ~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte 327 (539)
T KOG0548|consen 251 LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE 327 (539)
T ss_pred HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh
Confidence 7654 35555667777778888777777766666655432 2222222 233555667777777777776544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006012 400 HAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDT-HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITW 478 (664)
Q Consensus 400 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 478 (664)
...|+. ..+....+++....+...-. .|.. .-.-.-...+.+.|++..|...|.++++.. +-|...|
T Consensus 328 ~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lY 395 (539)
T KOG0548|consen 328 HRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLY 395 (539)
T ss_pred hcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHH
Confidence 333222 12223333343333332222 2222 111222556778899999999999999876 5678899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012 479 NTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG 540 (664)
Q Consensus 479 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 540 (664)
.....+|.+.|.+..|++-.+..++.+ ++....|..-..++....++++|.+.|.+..+.+
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999888888775 5555666666667777788999999999888764
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=0.00013 Score=85.55 Aligned_cols=369 Identities=13% Similarity=0.027 Sum_probs=222.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006012 268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK-TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV 346 (664)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 346 (664)
+......|...|++.+|......... .+. ..............|+++.+...++.+.......+..........+.
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 34445556677887777765443311 110 11122223445567888877777766532111112222334455566
Q ss_pred hcCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHH
Q 006012 347 KMGYLKDAEFVVSEMERSGV------LPD--EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS----FIYSRILAG 414 (664)
Q Consensus 347 ~~g~~~~a~~~~~~m~~~g~------~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~----~~~~~ll~~ 414 (664)
..|+++++...+....+.-- .+. ......+...+...|++++|...+++........+. ...+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 78999999999887754210 111 122223344566789999999999987653212222 244556667
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHH
Q 006012 415 YRDRGEWQRTFQVLKEMKSS----GV-EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE----GIE--P-DTITWNTLI 482 (664)
Q Consensus 415 ~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li 482 (664)
+...|++++|...+.+.... |. .....++..+...+...|++++|...+++.... +.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 78899999999999887642 21 111234555667788899999999998876642 211 1 223345556
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHH
Q 006012 483 DCHFKCGRYDRAEELFEEMQER--GYFP--CTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PNVVTY-----TTLV 552 (664)
Q Consensus 483 ~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~-----~~li 552 (664)
..+...|++++|...+.+.... ...+ ....+..+...+...|+.++|.+.+.++...... .....+ ...+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 6677789999999999887553 1112 2334445666778899999999999888542111 111111 1122
Q ss_pred HHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC
Q 006012 553 DIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS---NLALNSLINAFGEDQRDAEAFAVLQYMKEN----GLKPD 625 (664)
Q Consensus 553 ~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~ 625 (664)
..+...|+.+.|.+.+... ........ ...+..+..++...|++++|...+++..+. |...+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~-----------~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~ 729 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQA-----------PKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD 729 (903)
T ss_pred HHHHHCCCHHHHHHHHHhc-----------CCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH
Confidence 4445577888777664321 11100001 112456777888899999999999988752 33332
Q ss_pred -HHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 626 -VVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 626 -~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
..++..+..++.+.|+.++|.+.++
T Consensus 730 ~a~~~~~la~a~~~~G~~~~A~~~L~ 755 (903)
T PRK04841 730 LNRNLILLNQLYWQQGRKSEAQRVLL 755 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2467778889999999999988877
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.71 E-value=0.00023 Score=77.21 Aligned_cols=493 Identities=13% Similarity=0.064 Sum_probs=227.4
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012 142 SIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMS 217 (664)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (664)
+...++..|-+..+.. +.....|..|.+.|....+...|... .+...-+..++-.+...|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3445555555555544 34455677777777766555555554 33444556677788888888888888887733
Q ss_pred HHHHcCCCCChhhHHHHHHH--HHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006012 218 KMRQDGYHCDFINYSLVIQS--LTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVG 295 (664)
Q Consensus 218 ~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 295 (664)
.--+.. +--...++.+-.+ +...++...++ .-|+...+.. +.|...|..+..+|..+|.+..|+++|.++...
T Consensus 551 ~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV--~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L- 625 (1238)
T KOG1127|consen 551 RAAQKA-PAFACKENWVQRGPYYLEAHNLHGAV--CEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL- 625 (1238)
T ss_pred HHhhhc-hHHHHHhhhhhccccccCccchhhHH--HHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence 222211 0011111111111 12222222221 2233333222 457778888888888888888888888877764
Q ss_pred CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHH
Q 006012 296 LSPKT-ATYAAVITALSNSGRTIEAEAVFEELKESG------LKPRTKAYNALLKGYVKMGY-------LKDAEFVVSEM 361 (664)
Q Consensus 296 ~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~------~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~m 361 (664)
.|+. ..---..-..+..|.+.+|...+....... ..--..++-.+...+...|- ++++.+.|.-.
T Consensus 626 -rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 626 -RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred -CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3432 222223334566788888888777765421 00011122222222222222 22233333222
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHH------HHHHH-HHHHHhcCC--------------------CCCHHHHHHHHHH
Q 006012 362 ERSGVLPDEHTYSLLIDAYANAGRWE------SARIV-LKEMEVSHA--------------------KPNSFIYSRILAG 414 (664)
Q Consensus 362 ~~~g~~~~~~~~~~li~~~~~~g~~~------~A~~l-~~~m~~~~~--------------------~~~~~~~~~ll~~ 414 (664)
......-+...|-.+-+++.-.-..+ ....+ +.+....+. ..+..+|..+...
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGIN 784 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence 22221112222222221111000000 00000 001111110 1112233333333
Q ss_pred HHh----cC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 415 YRD----RG----EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHF 486 (664)
Q Consensus 415 ~~~----~g----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 486 (664)
|.+ .+ +...|+..+.+..+.. ..+..+|++|.-. ...|.+.-+...|-.-.... +....+|..+.-.+.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEE
Confidence 322 11 2234555555544432 2344555555443 44455555555444433222 334556666666677
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCChH
Q 006012 487 KCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA----QGLLPNVVTYTTLVDIYGQSGRFD 562 (664)
Q Consensus 487 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~~~li~~~~~~g~~~ 562 (664)
+..+++.|...|...+.-. +.+...|..........|+.-+...+|..--. .|--++..-|..........|+.+
T Consensus 862 ~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e 940 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE 940 (1238)
T ss_pred ecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence 7777777777777776654 44555555555555566666666666654211 133344444444444444555555
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHH----HHHHHHH
Q 006012 563 DAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE-NGLKPDVVTYT----TLMKALI 637 (664)
Q Consensus 563 ~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~----~l~~a~~ 637 (664)
+-+...+......+ ..++... |..-+...|.+.....-+.+.+++|.++..+.+. ...+-|...|+ .+.+.++
T Consensus 941 ~~I~t~~ki~sAs~-al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~l 1018 (1238)
T KOG1127|consen 941 ESINTARKISSASL-ALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLEL 1018 (1238)
T ss_pred HHHHHhhhhhhhHH-HHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Confidence 54443332211111 1111111 2222345666666666666666666666555432 00122333333 3444555
Q ss_pred hcCCHhHHHHH
Q 006012 638 RVDKFHKVFSS 648 (664)
Q Consensus 638 ~~g~~~~A~~~ 648 (664)
..|.++.|...
T Consensus 1019 slgefe~A~~a 1029 (1238)
T KOG1127|consen 1019 SLGEFESAKKA 1029 (1238)
T ss_pred hhcchhhHhhh
Confidence 56666666543
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=0.0001 Score=74.76 Aligned_cols=394 Identities=16% Similarity=0.116 Sum_probs=230.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC
Q 006012 201 SACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELD-GQLLNDVIVGFAKAG 279 (664)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d-~~~~~~li~~~~~~g 279 (664)
.+.+..|+++.|+..|-+..... ++|.+.|+--..++++.|++..++ -+.-....+.|+ ..-|+....++.-.|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al----~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKAL----KDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHH----HHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 45677899999999999988876 558888988888999999885433 222222334455 568888999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH---HHHHHHHHHc---CCCCCHHHHHHHHHHHHhc-----
Q 006012 280 DASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEA---EAVFEELKES---GLKPRTKAYNALLKGYVKM----- 348 (664)
Q Consensus 280 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A---~~l~~~m~~~---~~~p~~~~~~~li~~~~~~----- 348 (664)
++++|+..|.+-++.. +.+...++-+.+++.......+. -.++..+... ........|..++..+-+.
T Consensus 85 ~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred cHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999999887753 34566777777776211100000 0011111100 0000112333333332221
Q ss_pred -----CCHHHHHHHHHHH-----HHCC-------CCC------------C----------HHHHHHHHHHHHHcCCHHHH
Q 006012 349 -----GYLKDAEFVVSEM-----ERSG-------VLP------------D----------EHTYSLLIDAYANAGRWESA 389 (664)
Q Consensus 349 -----g~~~~a~~~~~~m-----~~~g-------~~~------------~----------~~~~~~li~~~~~~g~~~~A 389 (664)
.++..+...+... ...| ..| | ..-...+.++.-+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 0111111111100 0000 011 0 11234456666667777777
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHhccCCHHHHHHH
Q 006012 390 RIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYN-------VMIDTFGKYNCLHHAMAA 462 (664)
Q Consensus 390 ~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-------~li~~~~~~g~~~~A~~~ 462 (664)
++-+....... .+..-++....+|...|.+.++........+.|-. ...-|+ .+..+|.+.++++.+...
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 77777776654 45555666667777888777777776666555421 122222 233355666777778877
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006012 463 FDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT-TTYNIMINLLGEQERWEDVKRLLGNMRAQGL 541 (664)
Q Consensus 463 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 541 (664)
|.+.+.....|+. ..+....+++.+..+...-.+ |.. .-...-.+.+.+.|++..|...+.+++..+.
T Consensus 321 ~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P 389 (539)
T KOG0548|consen 321 YQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP 389 (539)
T ss_pred HHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 7776654333322 223344455555444443322 221 1122225566788999999999999999863
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 542 LPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMKEN 620 (664)
Q Consensus 542 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 620 (664)
-|...|....-+|.++|.+..|+.-.+..++ +.|+. ..|.-=..++....++++|.+.|++.++
T Consensus 390 -~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie-------------L~p~~~kgy~RKg~al~~mk~ydkAleay~eale- 454 (539)
T KOG0548|consen 390 -EDARLYSNRAACYLKLGEYPEALKDAKKCIE-------------LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE- 454 (539)
T ss_pred -chhHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 3789999999999999999988875332221 13443 2455556667777889999999998888
Q ss_pred CCCCCHHHHH
Q 006012 621 GLKPDVVTYT 630 (664)
Q Consensus 621 g~~p~~~~~~ 630 (664)
..|+..-+.
T Consensus 455 -~dp~~~e~~ 463 (539)
T KOG0548|consen 455 -LDPSNAEAI 463 (539)
T ss_pred -cCchhHHHH
Confidence 446544333
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.70 E-value=0.0002 Score=68.46 Aligned_cols=315 Identities=14% Similarity=0.092 Sum_probs=162.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHH
Q 006012 263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAY-NAL 341 (664)
Q Consensus 263 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~-~~l 341 (664)
.|+.-.--+...+...|++..|+.-|...++.+ +.+-.++.--...|...|+...|+.-+...++. +||-..- -.-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 444455556777888899999999998887642 222334444556788889988888888888764 5663221 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH
Q 006012 342 LKGYVKMGYLKDAEFVVSEMERSGVLPD--EHTYS------------LLIDAYANAGRWESARIVLKEMEVSHAKPNSFI 407 (664)
Q Consensus 342 i~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ 407 (664)
...+.+.|.+++|..-|+..++.....+ ...+. ..+..+...|+...|+.....+.+.. +.+...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHH
Confidence 3356788999999999999887643211 11111 11222333444444444444444321 233344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006012 408 YSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK 487 (664)
Q Consensus 408 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 487 (664)
|..-..+|...|+...|+.-++...+.. ..+..++--+-..+...|+.+.++...++-++. .||....-..
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~------ 262 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF------ 262 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH------
Confidence 4444445555555555544444433322 223333334444444445555544444444443 2332211100
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHH
Q 006012 488 CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNV---VTYTTLVDIYGQSGRFDDA 564 (664)
Q Consensus 488 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A 564 (664)
-..+.+..+.++.| ......++|.++.+-.+...+....... ..+..+-.++...|++.+|
T Consensus 263 YKklkKv~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 263 YKKLKKVVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred HHHHHHHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 00111111111111 1223445556666666655554333122 2233444556666677766
Q ss_pred HHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 565 IECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 565 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
++..... .+ +.|| ..++.--..+|.-...+|+|+.-|+.+.+
T Consensus 327 iqqC~ev-----------L~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 327 IQQCKEV-----------LD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHH-----------Hh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 6543211 11 3444 44666666677666777777777777766
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.68 E-value=0.00033 Score=76.05 Aligned_cols=145 Identities=11% Similarity=0.036 Sum_probs=80.6
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Q 006012 142 SIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTP--LTYNALISACARNDDLEKALNL 215 (664)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~ 215 (664)
+...|...|..+-+.+ +.+..........|+....++.|... .+..+.-. ..|.-..-.|...++..+|+.-
T Consensus 507 Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~ 584 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCE 584 (1238)
T ss_pred HHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHH
Confidence 5566777777776665 55667778888888888888888765 11111111 1233333445566666666666
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 216 MSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQ 292 (664)
Q Consensus 216 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~ 292 (664)
|+...+.. +-|...|..+..+|.+.|+...++ ++|......+ +.+...---...+-+..|++.+|+..++++.
T Consensus 585 fQsALR~d-PkD~n~W~gLGeAY~~sGry~~Al--KvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 585 FQSALRTD-PKDYNLWLGLGEAYPESGRYSHAL--KVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHhcCC-chhHHHHHHHHHHHHhcCceehHH--HhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 66666543 334456666666666666664433 6665544322 1111111112223445566666666665544
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.65 E-value=0.00029 Score=67.43 Aligned_cols=324 Identities=13% Similarity=0.079 Sum_probs=212.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 006012 299 KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY-SLLI 377 (664)
Q Consensus 299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li 377 (664)
++.-..-+...+...|++..|+.-|...++.+. -+-.++-.-...|...|+-.-|+.-+...++. +||-..- ---.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 444455677788889999999999998886421 12223333345788888888888888888775 5664322 1223
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 006012 378 DAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLH 457 (664)
Q Consensus 378 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 457 (664)
..+.+.|.+++|..=|+...+... +..+ ...++.+.-..++-+.+ ...+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~--s~~~---~~eaqskl~~~~e~~~l----------------~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEP--SNGL---VLEAQSKLALIQEHWVL----------------VQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCC--Ccch---hHHHHHHHHhHHHHHHH----------------HHHHHHHhcCCchh
Confidence 457789999999999999887642 2111 11222222222222221 22334455678888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 458 HAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMR 537 (664)
Q Consensus 458 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 537 (664)
.|+.....+++.. +.|...|..-..+|...|.+.+|+.-++...+.. ..+..++.-+-..+...|+.+.++..+++-.
T Consensus 173 ~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8888888888765 5688888888889999999999988887776654 4566777777888888899998888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHh-hhHHHHHHHHHHHHHCCCCCC--HH---HHHHHHHHHHhcCCHHHH
Q 006012 538 AQGLLPNVVTYTTLVDIYGQ-SGRFDDAIECLE-GLSDQAVNAFRVMRTDGLKPS--NL---ALNSLINAFGEDQRDAEA 610 (664)
Q Consensus 538 ~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~-~~~~~a~~~~~~m~~~g~~p~--~~---~~~~li~~~~~~g~~~~A 610 (664)
+. .||...+-..-.-+-+ ...++.|.+.++ +...++++..+...+. .|. .+ .+..+-.++...|++.+|
T Consensus 251 Kl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 251 KL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred cc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHH
Confidence 74 5665433222111111 111222222222 3334444445555543 333 22 344566777888999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 006012 611 FAVLQYMKENGLKPD-VVTYTTLMKALIRVDKFHKVFSSYLFFNI 654 (664)
Q Consensus 611 ~~~~~~m~~~g~~p~-~~~~~~l~~a~~~~g~~~~A~~~~~~~~~ 654 (664)
++...+.++ +.|| ..++.--..+|.-...++.|+.-|+.-..
T Consensus 327 iqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 327 IQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 999999998 5665 78898899999999999999999884433
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=0.00018 Score=84.30 Aligned_cols=340 Identities=14% Similarity=0.044 Sum_probs=211.8
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHH
Q 006012 275 FAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGL------KPR--TKAYNALLKGYV 346 (664)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~------~p~--~~~~~~li~~~~ 346 (664)
....|+++.+.++++.+.......+..........+...|++++|...+......-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666666665442111111222233445566788999999999988754211 111 112223344566
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC--CHHHHHHHHHHHHh
Q 006012 347 KMGYLKDAEFVVSEMERSGVLPDE----HTYSLLIDAYANAGRWESARIVLKEMEVSHA---KP--NSFIYSRILAGYRD 417 (664)
Q Consensus 347 ~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~---~~--~~~~~~~ll~~~~~ 417 (664)
..|++++|...+++..+.-...+. ...+.+...+...|++++|...+++...... .+ ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 889999999999988763212222 3445666777889999999999988764311 11 12345566777889
Q ss_pred cCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHH
Q 006012 418 RGEWQRTFQVLKEMKS----SGVE--P-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG--IEP--DTITWNTLIDCHF 486 (664)
Q Consensus 418 ~g~~~~a~~~~~~m~~----~g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~--~~~~~~~li~~~~ 486 (664)
.|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999999887654 2211 1 22344555666777899999999998876431 112 2334555666788
Q ss_pred HcCCHHHHHHHHHHHHHC--CCCCCHHH---H-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 006012 487 KCGRYDRAEELFEEMQER--GYFPCTTT---Y-NIMINLLGEQERWEDVKRLLGNMRAQGLLPN---VVTYTTLVDIYGQ 557 (664)
Q Consensus 487 ~~g~~~~A~~~~~~m~~~--~~~p~~~t---~-~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~ 557 (664)
..|++++|.+.+.+.... ........ . ...+..+...|+.+.|.+.+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 899999999999887542 11111111 0 1122444568899999999877654221111 1124567778899
Q ss_pred cCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012 558 SGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKENG 621 (664)
Q Consensus 558 ~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 621 (664)
.|++++|...++.... .. ...|..++ ..+...+..++...|+.++|...+.++.+..
T Consensus 704 ~g~~~~A~~~l~~al~----~~---~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNE----NA---RSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHH----HH---HHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999987653332 22 22233332 2356777888999999999999999998743
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.65 E-value=3.4e-06 Score=82.92 Aligned_cols=137 Identities=15% Similarity=0.182 Sum_probs=71.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cC
Q 006012 414 GYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK----CG 489 (664)
Q Consensus 414 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g 489 (664)
.+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.. .|.. ...+..++.. .+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~-l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSI-LTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHH-HHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHH-HHHHHHHHHHHHhCch
Confidence 344455555555544321 344455555566666666666666666665432 2322 2223333222 22
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006012 490 RYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRF 561 (664)
Q Consensus 490 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 561 (664)
.+.+|..+|+++.++ ..++..+.+.+..+....|++++|.+++.+....+.. ++.+...++-+....|+.
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-T
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCC
Confidence 466666666666544 3456666666666666667777776666666554322 455555566666666665
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=4.9e-06 Score=84.84 Aligned_cols=262 Identities=18% Similarity=0.132 Sum_probs=157.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012 309 ALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWES 388 (664)
Q Consensus 309 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 388 (664)
-+.+.|++.+|.-+|+..++.... +...|.-|.......++-..|+..+++..+.... |....-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 344555566666666655554322 4555555555555555555566666665554332 44555555555555555555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-
Q 006012 389 ARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRML- 467 (664)
Q Consensus 389 A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 467 (664)
|.+.++..+....+ |..+..+ ...+++. .+ ..+.....+....++|-++.
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~--------------~~---------~s~~~~~~l~~i~~~fLeaa~ 422 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSA-GENEDFE--------------NT---------KSFLDSSHLAHIQELFLEAAR 422 (579)
T ss_pred HHHHHHHHHHhCcc-----chhcccc-Ccccccc--------------CC---------cCCCCHHHHHHHHHHHHHHHH
Confidence 65555555443211 0000000 0000000 00 11111122334445554444
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH
Q 006012 468 SEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN-VV 546 (664)
Q Consensus 468 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~ 546 (664)
..+..+|......|.-.|--.|.+++|.+.|+.++... +-|..+||.|...++...+.++|...|++.++ ++|. +.
T Consensus 423 ~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR 499 (579)
T KOG1125|consen 423 QLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVR 499 (579)
T ss_pred hCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeee
Confidence 44445778888888888889999999999999998876 67889999999999999999999999999988 4666 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012 547 TYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTD------GLKPSNLALNSLINAFGEDQRDAEAFA 612 (664)
Q Consensus 547 ~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~ 612 (664)
+...|.-+|...|.+++|.+.|- .|+. |..+ +..++...|..|=.++.-.++.|-+.+
T Consensus 500 ~RyNlgIS~mNlG~ykEA~~hlL----~AL~----mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 500 VRYNLGISCMNLGAYKEAVKHLL----EALS----MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred eehhhhhhhhhhhhHHHHHHHHH----HHHH----hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 56667888999999999988653 2222 2222 112234567777677776777665444
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.59 E-value=0.0012 Score=67.25 Aligned_cols=409 Identities=12% Similarity=0.107 Sum_probs=244.4
Q ss_pred HHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh
Q 006012 154 QKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFI 229 (664)
Q Consensus 154 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 229 (664)
++.+ |.+...|+.||.-+... ..++++.. ....+-.+..|..-|..-.+.++++....+|.+....- .+..
T Consensus 13 ie~n--P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlD 87 (656)
T KOG1914|consen 13 IEEN--PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLD 87 (656)
T ss_pred HhcC--CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHh
Confidence 3444 66778899999888776 78887766 33445567899999999999999999999999987653 4555
Q ss_pred hHHHHHHHHHhc-CCCCh--HHHHHHHHH-HHhCCCCC-CHHHHHHHHHH---------HHHcCCHHHHHHHHHHHHhCC
Q 006012 230 NYSLVIQSLTRT-NKIDS--SLLQKLYKE-IECDKIEL-DGQLLNDVIVG---------FAKAGDASKAMRFLGMAQGVG 295 (664)
Q Consensus 230 ~~~~ll~~~~~~-g~~~~--~~~~~l~~~-~~~~~~~~-d~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~~g 295 (664)
.|..-|.-..+. ++... +...+.|+. +.+.|+++ .-.+|+..+.. |....+.+...++++++...-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 666666433332 22221 111233443 33345433 23345555543 333445556677777776532
Q ss_pred CC------CCHHHHHHHHHHHH-------hcCChHHHHHHHHHHHH--cCCCCCHH---------------HHHHHHHHH
Q 006012 296 LS------PKTATYAAVITALS-------NSGRTIEAEAVFEELKE--SGLKPRTK---------------AYNALLKGY 345 (664)
Q Consensus 296 ~~------~~~~~~~~li~~~~-------~~g~~~~A~~l~~~m~~--~~~~p~~~---------------~~~~li~~~ 345 (664)
+. .|-..|..-|+... +...+..|.++++++.. +|...+.. .|..+|..-
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 11 11122222222221 22346677777777653 33322211 244444432
Q ss_pred HhcCCH--------HHHHHHHHHHH-HCCCCCCHHHHHH-----HHHHHHHcCC-------HHHHHHHHHHHHhcCCCCC
Q 006012 346 VKMGYL--------KDAEFVVSEME-RSGVLPDEHTYSL-----LIDAYANAGR-------WESARIVLKEMEVSHAKPN 404 (664)
Q Consensus 346 ~~~g~~--------~~a~~~~~~m~-~~g~~~~~~~~~~-----li~~~~~~g~-------~~~A~~l~~~m~~~~~~~~ 404 (664)
-..+-- ....-++++.. -.+..|++.-..+ .-+.+...|+ .+++..+++.....-...+
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 222210 11222222222 2233333211111 1122333343 4566677776654433334
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 006012 405 SFIYSRILAGYRDRG---EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEP-DTITWNT 480 (664)
Q Consensus 405 ~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ 480 (664)
..+|..+..---..- ..+.....++++...-..--..+|..+++...+..-+..|..+|.+..+.+..+ ++..+++
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A 407 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA 407 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence 444444433221111 355666667776654323334567778888888888999999999999887666 7888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc
Q 006012 481 LIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN--VVTYTTLVDIYGQS 558 (664)
Q Consensus 481 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~ 558 (664)
+|.-|| .++.+-|.++|+--+++- ..+..--...+.-+...++-..+..+|++.+..++.|+ ..+|..+++-=..-
T Consensus 408 ~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~v 485 (656)
T KOG1914|consen 408 LMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNV 485 (656)
T ss_pred HHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhc
Confidence 999887 578899999999866652 34455556777888889999999999999998866555 57899999999999
Q ss_pred CChHHHHHHHh
Q 006012 559 GRFDDAIECLE 569 (664)
Q Consensus 559 g~~~~A~~~~~ 569 (664)
|++..++++-+
T Consensus 486 GdL~si~~lek 496 (656)
T KOG1914|consen 486 GDLNSILKLEK 496 (656)
T ss_pred ccHHHHHHHHH
Confidence 99998887644
No 104
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.0017 Score=70.70 Aligned_cols=320 Identities=15% Similarity=0.168 Sum_probs=203.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHH
Q 006012 191 LTPLTYNALISACARNDDLEKALNLMSKMRQDG--YHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLL 268 (664)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~ 268 (664)
.|+..-..-+.++...+-+.+-+++++++.-.. +.-+.-.-+.++-...+..+. ++.+.+.+. |-.--
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~t------rVm~YI~rL----dnyDa 1051 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRT------RVMEYINRL----DNYDA 1051 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChH------HHHHHHHHh----ccCCc
Confidence 455566677788888888888888888877532 111111223333333332221 333333321 11111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006012 269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM 348 (664)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 348 (664)
-.+...+...+-+++|..+|++.. .+....+.||.- -+.++.|.+.-++.. ....|..+..+-.+.
T Consensus 1052 ~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1052 PDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQG 1117 (1666)
T ss_pred hhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhc
Confidence 224455566677888888887653 344454554432 344555555444332 346788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012 349 GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVL 428 (664)
Q Consensus 349 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 428 (664)
|.+.+|.+-|-+. -|+..|..+++...+.|.+++-.+.+...++....|.. =+.++-+|++.++..+..++.
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh
Confidence 8888877666443 26777888888888888888888887776665544443 356778888888776655543
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006012 429 KEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP 508 (664)
Q Consensus 429 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 508 (664)
. -|+..-...+.+-|...|.++.|.-+|... ..|..|...+...|++..|.+.-++. .
T Consensus 1190 ~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------n 1247 (1666)
T KOG0985|consen 1190 A-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------N 1247 (1666)
T ss_pred c-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------c
Confidence 2 477777777788888888888887777544 34777777778888888877765543 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012 509 CTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE 569 (664)
Q Consensus 509 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (664)
+..||-.+-.+|...+.+.-| +|...++.....-..-++..|...|-+++-+.+++
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 566888888888777665544 34444445556666778888888888887777665
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.56 E-value=3.4e-06 Score=82.97 Aligned_cols=249 Identities=16% Similarity=0.122 Sum_probs=161.4
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006012 275 FAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDA 354 (664)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 354 (664)
+.-.|++..++.-.+ .....-..+......+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 445688888876555 222221223445666778888888876544 3433333 56666665555544443455555
Q ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 355 EFVVSEMERSGVL-PDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS 433 (664)
Q Consensus 355 ~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 433 (664)
..-+++....... .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555544433322 23333333335566789999998888643 4667777888999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006012 434 SGVEPDTHFYNVMIDTFG----KYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC 509 (664)
Q Consensus 434 ~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 509 (664)
.+ .| .+...+..++. ..+.+.+|..+|+++.+. ..++..+.|.+..++...|++++|.+++.+..+.+ +-+
T Consensus 160 ~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~ 234 (290)
T PF04733_consen 160 ID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PND 234 (290)
T ss_dssp CS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCH
T ss_pred cC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCC
Confidence 53 34 33444444443 234689999999998654 46788899999999999999999999999988776 456
Q ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 006012 510 TTTYNIMINLLGEQERW-EDVKRLLGNMRAQ 539 (664)
Q Consensus 510 ~~t~~~ll~~~~~~g~~-~~a~~~~~~m~~~ 539 (664)
..+...++.+....|+. +.+.+.+.++...
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 77777788777888887 6788888888764
No 106
>PLN02789 farnesyltranstransferase
Probab=98.53 E-value=0.00018 Score=71.89 Aligned_cols=212 Identities=10% Similarity=0.038 Sum_probs=127.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006012 270 DVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG-RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM 348 (664)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 348 (664)
.+-..+...++.++|+.+.+++++.. +-+..+|+....++...| +++++++.++++.+.+.+ +..+|+.-...+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 33344555677788888888877653 334556776666666666 567888888887776544 555666555555555
Q ss_pred CC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CC---
Q 006012 349 GY--LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR---GE--- 420 (664)
Q Consensus 349 g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~---g~--- 420 (664)
|+ .+++..+++.+.+...+ |..+|+.....+.+.|+++++++.++++++.+. .|...|+.....+.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccc
Confidence 54 25667777777766544 777787777777777888888888888877653 3455555555444433 21
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006012 421 -WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY----NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK 487 (664)
Q Consensus 421 -~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 487 (664)
.++.++...+++... +-+...|+-+...+... +...+|.+.+.+..+.+ ..+......|++.|+.
T Consensus 198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 234455554544432 34455555555555442 23344555555554433 2344455555555553
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1.3e-07 Score=59.19 Aligned_cols=34 Identities=32% Similarity=0.562 Sum_probs=29.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 585 DGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMK 618 (664)
Q Consensus 585 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 618 (664)
+|+.||..||++||++|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888899999999999999999998888873
No 108
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1.4e-07 Score=59.00 Aligned_cols=32 Identities=63% Similarity=0.914 Sum_probs=20.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012 470 GIEPDTITWNTLIDCHFKCGRYDRAEELFEEM 501 (664)
Q Consensus 470 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 501 (664)
|+.||..+||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666655
No 109
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=0.00028 Score=66.16 Aligned_cols=319 Identities=14% Similarity=0.086 Sum_probs=176.5
Q ss_pred HHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhc
Q 006012 167 SILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSL-VIQSLTRT 241 (664)
Q Consensus 167 ~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~ 241 (664)
++.+..+.+..++.+|+.+ .++.+++......|..+|.+..++..|-+.++++... .|...-|.. -.+++.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 3444445566677777766 3345556677777778888888888888888887764 354444432 22344445
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 006012 242 NKIDSSLLQKLYKEIECDKIELDGQLLNDVI----VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTI 317 (664)
Q Consensus 242 g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 317 (664)
+.+.+ +.++...|... ....+..+ ......+++..+..+.++.... .+..+.+.......+.|+++
T Consensus 92 ~i~AD--ALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 92 CIYAD--ALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred cccHH--HHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHH
Confidence 55533 33555444432 11111111 1223456666777776665432 24555556666667788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCH--------------
Q 006012 318 EAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVL-------------PDE-------------- 370 (664)
Q Consensus 318 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-------------~~~-------------- 370 (664)
+|.+-|+...+.+---....||..+..| +.|+.+.|.+...+++++|++ ||+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 8888888777643322456676555443 556778888888877776642 111
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 371 -HTYSLLIDAYANAGRWESARIVLKEMEVS-HAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMID 448 (664)
Q Consensus 371 -~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 448 (664)
..+|.-...+.+.|+++.|.+.+-.|.-+ ....|++|...+.-.- ..+++.+...-+.-+.+.. +-...|+..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHH
Confidence 11222333445677888888777777432 2345566655443222 1233444444444444443 345678888888
Q ss_pred HHhccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Q 006012 449 TFGKYNCLHHAMAAFDRMLSEGI-EPDTITWNTLIDCHFK-CGRYDRAEELFEEM 501 (664)
Q Consensus 449 ~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m 501 (664)
.||+..-++-|-.++.+-...-. -.+...|+ |++++.. .-..++|++-++.+
T Consensus 319 lyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 88888888877777654321110 11223333 3333332 33456666555544
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=3e-05 Score=79.27 Aligned_cols=261 Identities=15% Similarity=0.103 Sum_probs=176.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012 273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLK 352 (664)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 352 (664)
.-+.+.|++.+|.-.|+..++.+ +-+...|..|...-...++-..|+..+++..+.... |....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 34678899999999999998875 557899999999999999999999999999886433 6788888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-
Q 006012 353 DAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEM- 431 (664)
Q Consensus 353 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m- 431 (664)
+|...++.-++..++ |..+... ...++.+.- +-.++... +....++|-++
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~~----------~s~~~~~~-------------l~~i~~~fLeaa 421 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSA-GENEDFENT----------KSFLDSSH-------------LAHIQELFLEAA 421 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhcccc-CccccccCC----------cCCCCHHH-------------HHHHHHHHHHHH
Confidence 999999998875432 1111110 001111100 00112211 22233333333
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H
Q 006012 432 KSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC-T 510 (664)
Q Consensus 432 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~ 510 (664)
...+..+|..+...|.-.|.-.|++++|.+.|+..+... +-|...||-|...++...+.++|+.-|++.++.. |+ +
T Consensus 422 ~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yV 498 (579)
T KOG1125|consen 422 RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYV 498 (579)
T ss_pred HhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCee
Confidence 334444677777777777788888888888888877654 3467788888888888888888888888887753 33 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006012 511 TTYNIMINLLGEQERWEDVKRLLGNMRAQ---------GLLPNVVTYTTLVDIYGQSGRFDDAIEC 567 (664)
Q Consensus 511 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---------~~~p~~~~~~~li~~~~~~g~~~~A~~~ 567 (664)
.....|.-.|...|.+++|.+.|-..+.. +..++..+|.+|=.++...++.|.+.++
T Consensus 499 R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 499 RVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred eeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 34444566778888888887777655432 1112345676666666667766655444
No 111
>PLN02789 farnesyltranstransferase
Probab=98.48 E-value=0.0002 Score=71.52 Aligned_cols=207 Identities=8% Similarity=0.012 Sum_probs=145.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--
Q 006012 310 LSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMG-YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRW-- 386 (664)
Q Consensus 310 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-- 386 (664)
+...++.++|+.++.++++.+.. +..+|+.--.++...| ++++++..++++.+...+ +..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 34567889999999999886432 4556776666777777 679999999999887655 666787766666666653
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CC----HHHH
Q 006012 387 ESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY---NC----LHHA 459 (664)
Q Consensus 387 ~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~----~~~A 459 (664)
++++.+++++.+.+ +-|..+|+....++...|+++++++.++++++.+ ..+..+|+.....+.+. |. .++.
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHH
Confidence 67788888888765 4678889888888888999999999999998876 44556666655554443 22 2455
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012 460 MAAFDRMLSEGIEPDTITWNTLIDCHFKC----GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE 522 (664)
Q Consensus 460 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 522 (664)
......++... +-+...|+-+...+... ++..+|.+.+.+....+ ..+......|++.|+.
T Consensus 203 l~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 56665665543 34667777777777663 33456777777766644 4456667777777765
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=0.00012 Score=76.98 Aligned_cols=218 Identities=14% Similarity=0.131 Sum_probs=167.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 006012 333 PRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRIL 412 (664)
Q Consensus 333 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll 412 (664)
|--..-..+...+...|-...|..+++++. .|.-+|.+|+..|+..+|..+..+..+ -+|+...|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 333344566777888888899998888764 466678889999999999888888776 368888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006012 413 AGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYD 492 (664)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 492 (664)
+......-+++|+++.+....+ .-..+.......++++++.+.|+.-.+.. +.-..+|-.+..+..+++++.
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 8888888888888888774322 11122222334688899999988877654 345677888888888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhh
Q 006012 493 RAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGL 571 (664)
Q Consensus 493 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 571 (664)
.|.+.|.....-. +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+..+|...+..-.+.|.+++|++.+..+
T Consensus 537 ~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 537 AAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999887765 5567889999999999999999999999999887 346677777788888999999998876643
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.47 E-value=7.6e-05 Score=83.45 Aligned_cols=227 Identities=12% Similarity=0.060 Sum_probs=177.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012 402 KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS-GVE---PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTIT 477 (664)
Q Consensus 402 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 477 (664)
+.+...|-..|......++.++|.++.++.... +++ --...|.++++.-...|.-+...++|++..+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 455667888888888889999999998887653 222 22357778888778888889999999999874 234567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 006012 478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PNVVTYTTLVDIYG 556 (664)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~ 556 (664)
|..|...|.+.+.+++|-++++.|.++- .-....|...+..+.++.+-+.|..++.++.+.-.+ -......-.++.-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8999999999999999999999999873 356788999999999999999999999999875222 13456667778888
Q ss_pred hcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 006012 557 QSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV--VTYTTLMK 634 (664)
Q Consensus 557 ~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~ 634 (664)
+.|+.+.++.+|+|.+.. .+-....|+.+++.-.++|+.+.+..+|++....++.|-. ..|...+.
T Consensus 1612 k~GDaeRGRtlfEgll~a------------yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSA------------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred hcCCchhhHHHHHHHHhh------------CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 999999999998866532 1224568999999999999999999999999998888753 56666666
Q ss_pred HHHhcCCHh
Q 006012 635 ALIRVDKFH 643 (664)
Q Consensus 635 a~~~~g~~~ 643 (664)
.=-..|+-+
T Consensus 1680 yEk~~Gde~ 1688 (1710)
T KOG1070|consen 1680 YEKSHGDEK 1688 (1710)
T ss_pred HHHhcCchh
Confidence 444445543
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.44 E-value=0.00014 Score=81.47 Aligned_cols=205 Identities=15% Similarity=0.109 Sum_probs=123.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006012 299 KTATYAAVITALSNSGRTIEAEAVFEELKESGLKP-----RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY 373 (664)
Q Consensus 299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 373 (664)
+...|...|....+.++.++|++++++.+.. +.+ -.-.|.++++.-..-|.-+...++|+++.+.- -....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 3556777777777777777777777776542 211 12345666666666666666777777766541 123456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhc
Q 006012 374 SLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGV-EPDTHFYNVMIDTFGK 452 (664)
Q Consensus 374 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~ 452 (664)
..|...|.+.+..++|.++|+.|.+.-- -....|...+..+.+..+-+.|..++....+.-. .-......-.+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 6677777777777777777777765432 4455666666666666666666666666554310 1123334444445556
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006012 453 YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP 508 (664)
Q Consensus 453 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 508 (664)
.|+.+.+..+|+..+... +.-...|+..|++-.++|+.+.+..+|++....++.|
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 666666666666666442 2234556666666666666666666666666665444
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=3.3e-05 Score=80.98 Aligned_cols=240 Identities=14% Similarity=0.119 Sum_probs=187.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012 297 SPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLL 376 (664)
Q Consensus 297 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 376 (664)
+|--..-..+...+...|-..+|..+|+++. .|..+|.+|+..|+..+|..+..+..++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 4444455667788899999999999998864 4667899999999999999999988874 6899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 006012 377 IDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCL 456 (664)
Q Consensus 377 i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 456 (664)
.+.....--+++|+++.+..... .-..+.....+.+++.++.+.|+.-.+.. +.-..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 98888777889999998876432 11122222344789999999998866553 45567888888888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012 457 HHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNM 536 (664)
Q Consensus 457 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 536 (664)
+.|.+.|..-.... +-+...||.+-.+|.+.|+-.+|...+.+..+.+ .-+-..|...+-...+.|.+++|.+.+.++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999999888653 3456789999999999999999999999999988 445667777777889999999999999988
Q ss_pred HHCC-CCCCHHHHHHHHHHHHh
Q 006012 537 RAQG-LLPNVVTYTTLVDIYGQ 557 (664)
Q Consensus 537 ~~~~-~~p~~~~~~~li~~~~~ 557 (664)
.... ..-|..+...++..-.+
T Consensus 614 l~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHhhhhcccchhhHHHHHHHHh
Confidence 7641 12255555555555443
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.34 E-value=0.00023 Score=79.10 Aligned_cols=221 Identities=11% Similarity=0.049 Sum_probs=133.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-C--------
Q 006012 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK-TATYAAVITALSNSGRTIEAEAVFEELKESG-L-------- 331 (664)
Q Consensus 262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~-------- 331 (664)
+.+...+..|+..|...+++++|.++.+...+. .|+ ...|..+...+.+.++.+++.-+ .+...- .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 345667888888888889999999988876654 344 33444444567777776666555 332210 0
Q ss_pred ---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006012 332 ---------KPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAK 402 (664)
Q Consensus 332 ---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 402 (664)
.-+...+..+..+|-+.|+.+++..+++++.+..+. |+.+.|.+...|... ++++|.+++.+....
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--- 178 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR--- 178 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence 001234455666666666777777777776666533 566666666666666 666666666665432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHH
Q 006012 403 PNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE-GIEPDTITWNTL 481 (664)
Q Consensus 403 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~l 481 (664)
+...+++..+.++|.++.... |+ +++.-..+.+.+... |...-+.++-.+
T Consensus 179 ------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 179 ------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred ------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 455556666666666665542 21 223333333344332 333445566667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 482 IDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG 521 (664)
Q Consensus 482 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 521 (664)
-..|-..++++++..+++.+++.. +-|.....-++..|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 777778888888888888888776 445556666666655
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=0.00066 Score=68.54 Aligned_cols=149 Identities=10% Similarity=0.060 Sum_probs=117.8
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006012 449 TFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWED 528 (664)
Q Consensus 449 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 528 (664)
.+...|++++|+..++.+.+.. +-|...+....+.+.+.++.++|.+.++.+.... +-.....-.+.+++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 3456688899999999988763 4566677777889999999999999999999875 2236667778889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006012 529 VKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDA 608 (664)
Q Consensus 529 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 608 (664)
|..+++...... +-|+..|..|..+|...|+..++... ...+|.-.|+++
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A-----------------------------~AE~~~~~G~~~ 442 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLA-----------------------------RAEGYALAGRLE 442 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHH-----------------------------HHHHHHhCCCHH
Confidence 999999988774 34889999999999999998877553 234566689999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH
Q 006012 609 EAFAVLQYMKENGLKPDVVTYT 630 (664)
Q Consensus 609 ~A~~~~~~m~~~g~~p~~~~~~ 630 (664)
+|+..+....+. .+++..+|.
T Consensus 443 ~A~~~l~~A~~~-~~~~~~~~a 463 (484)
T COG4783 443 QAIIFLMRASQQ-VKLGFPDWA 463 (484)
T ss_pred HHHHHHHHHHHh-ccCCcHHHH
Confidence 999999988875 355555544
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.33 E-value=0.00012 Score=70.68 Aligned_cols=188 Identities=12% Similarity=0.010 Sum_probs=126.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--H
Q 006012 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK---TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRT--K 336 (664)
Q Consensus 262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~ 336 (664)
+.....+-.+...+...|++++|...|+++.... +.+ ..++..+..++.+.|++++|...|+++.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677778888999999999999999987753 222 246788889999999999999999999875432111 2
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 006012 337 AYNALLKGYVKM--------GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIY 408 (664)
Q Consensus 337 ~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~ 408 (664)
++..+..++... |+.++|.+.++.+.+.... +...+..+..... .... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~------~~--------~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR------LA--------GKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH------HH--------HHH
Confidence 455555555554 6788899999998876432 2223322211100 0000 00 011
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 006012 409 SRILAGYRDRGEWQRTFQVLKEMKSSGV--EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE 469 (664)
Q Consensus 409 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 469 (664)
..+...+.+.|++++|...++...+... +.....+..+..++.+.|+.++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455667888888888888888776521 223567888888888899999998888887754
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0017 Score=60.42 Aligned_cols=134 Identities=15% Similarity=0.152 Sum_probs=68.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--
Q 006012 305 AVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN-- 382 (664)
Q Consensus 305 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-- 382 (664)
.-...|+..|++++|++...... +....-.=+..+.+..+++.|.+.++.|.+.. +..|.+-|..++.+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la 183 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLA 183 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHh
Confidence 33445566666666666555411 22222222334445555666666666666531 34445444444443
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012 383 --AGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDT 449 (664)
Q Consensus 383 --~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 449 (664)
.+.+..|.-+|++|.+. .+|+..+.+....++...|++++|..++++...+. ..+..+...++..
T Consensus 184 ~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVL 250 (299)
T ss_pred ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHH
Confidence 23455666666666442 34555666666666666666666666666655543 2334444333333
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.25 E-value=0.00077 Score=75.08 Aligned_cols=170 Identities=11% Similarity=0.071 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH-HHHhcCCCChHHHHHHHHHHHhCCCCCCHHHH
Q 006012 190 RLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQ-SLTRTNKIDSSLLQKLYKEIECDKIELDGQLL 268 (664)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~ 268 (664)
+.+...|..|+..+...+++++|+++.+...+. .|+...+-.... .+.+.++.+.+.. .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~l------------------v 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNL------------------L 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhh------------------h
Confidence 345567777777777777777777777755554 455443322221 2223332222111 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006012 269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM 348 (664)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 348 (664)
.++.......++.-...+...|... .-+...+..+..+|-+.|+.++|.++|+++++... -|..+.|.+...|...
T Consensus 88 -~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 88 -NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE 163 (906)
T ss_pred -hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh
Confidence 3333333444443333333444432 23444666666777777777777777777776652 3666677777777766
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006012 349 GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVS 399 (664)
Q Consensus 349 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 399 (664)
++++|.+++.+.... |...+++.++.+++.++...
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 777777766665543 44445555555555555543
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.24 E-value=0.00019 Score=69.21 Aligned_cols=68 Identities=22% Similarity=0.116 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012 298 PKTATYAAVITALSNSGRTIEAEAVFEELKESGLK-P-RTKAYNALLKGYVKMGYLKDAEFVVSEMERSG 365 (664)
Q Consensus 298 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 365 (664)
.....+..+...+.+.|++++|...|+++...... | ....+..+..++.+.|++++|...++.+.+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH 100 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 34566777777777777777777777777664221 1 12355666677777777777777777776653
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.21 E-value=0.00032 Score=65.11 Aligned_cols=124 Identities=13% Similarity=0.141 Sum_probs=70.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCC--HHHH
Q 006012 383 AGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTF-GKYNC--LHHA 459 (664)
Q Consensus 383 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~--~~~A 459 (664)
.++.+++...++...+.+ +.+...|..+...|...|++++|...|+...+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444455555555554443 4455566666666666666666666666665543 33455555555542 44454 3666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 006012 460 MAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT 510 (664)
Q Consensus 460 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 510 (664)
.+++++..+.. +.+...+..+...+.+.|++++|+..|+++.+.. +|+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~ 178 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRV 178 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 66666666554 2345556666666666666666666666666654 3433
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.19 E-value=0.00036 Score=64.79 Aligned_cols=149 Identities=10% Similarity=0.170 Sum_probs=115.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 006012 377 IDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCL 456 (664)
Q Consensus 377 i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 456 (664)
+..|...|+++.+....+.+.... ..+...++.+++...++...+.. +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~------------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL------------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc------------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 456788888887655543332110 12223567777887887777654 67888999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012 457 HHAMAAFDRMLSEGIEPDTITWNTLIDC-HFKCGR--YDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLL 533 (664)
Q Consensus 457 ~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~--~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 533 (664)
++|...|++..+.. +.+...+..+..+ |...|+ .++|.+++++..+.+ +-+...+..+...+.+.|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999875 3467778888776 467777 599999999999987 557888899999999999999999999
Q ss_pred HHHHHCC
Q 006012 534 GNMRAQG 540 (664)
Q Consensus 534 ~~m~~~~ 540 (664)
+++.+..
T Consensus 168 ~~aL~l~ 174 (198)
T PRK10370 168 QKVLDLN 174 (198)
T ss_pred HHHHhhC
Confidence 9998864
No 124
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.18 E-value=0.012 Score=60.32 Aligned_cols=140 Identities=11% Similarity=0.159 Sum_probs=91.2
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCC
Q 006012 184 LLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIEL 263 (664)
Q Consensus 184 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~ 263 (664)
...+..+-|..+|+.||+-+-.. -++++.+.+++|... ++-....|..-+..-.+.++++ .++++|....... .
T Consensus 11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe--~VEkLF~RCLvkv--L 84 (656)
T KOG1914|consen 11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFE--SVEKLFSRCLVKV--L 84 (656)
T ss_pred HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHH--h
Confidence 33556678999999999977655 999999999999875 3445567888888888888874 3578888877653 3
Q ss_pred CHHHHHHHHHHHHH-cCCHHH----HHHHHHHHH-hCCCCCC-HHHHHHHHHHH---------HhcCChHHHHHHHHHHH
Q 006012 264 DGQLLNDVIVGFAK-AGDASK----AMRFLGMAQ-GVGLSPK-TATYAAVITAL---------SNSGRTIEAEAVFEELK 327 (664)
Q Consensus 264 d~~~~~~li~~~~~-~g~~~~----A~~~~~~~~-~~g~~~~-~~~~~~li~~~---------~~~g~~~~A~~l~~~m~ 327 (664)
+...|..-+..--+ .|+... ..+.|+... +.|+.+- ...|+..+..+ ..+.+++...++|+++.
T Consensus 85 nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral 164 (656)
T KOG1914|consen 85 NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL 164 (656)
T ss_pred hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence 45566665553222 233333 233444333 4454443 33455555433 34456777888888887
Q ss_pred Hc
Q 006012 328 ES 329 (664)
Q Consensus 328 ~~ 329 (664)
..
T Consensus 165 ~t 166 (656)
T KOG1914|consen 165 VT 166 (656)
T ss_pred cC
Confidence 64
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.16 E-value=0.00069 Score=62.95 Aligned_cols=134 Identities=19% Similarity=0.135 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006012 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL 341 (664)
Q Consensus 262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 341 (664)
+.|....+..+....+.|++.+|...|++..... ++|...|+.+.-+|.+.|+.++|..-|.+..+.-.. +...+|.|
T Consensus 97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNl 174 (257)
T COG5010 97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNL 174 (257)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhH
Confidence 4566677778888888999999999999888754 678889999999999999999999999888875332 55678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012 342 LKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEV 398 (664)
Q Consensus 342 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 398 (664)
...+.-.|+.+.|..++......+.. |..+-..+.......|++++|.++-.+-..
T Consensus 175 gms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 175 GMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 88888889999999999888876543 677777788888889999999887765543
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.0055 Score=57.12 Aligned_cols=107 Identities=19% Similarity=0.174 Sum_probs=49.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006012 452 KYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK----CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWE 527 (664)
Q Consensus 452 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 527 (664)
+..+++-|.+.++.|.+- -+..+.+.|..++.+ .+.+.+|+-+|++|.++- .|+..+.+....++...|+++
T Consensus 149 k~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHH
Confidence 334444444444444431 233333434443332 233455555555554432 455555555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006012 528 DVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDD 563 (664)
Q Consensus 528 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 563 (664)
+|..++++....... ++.+...++-+-...|...+
T Consensus 225 eAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 225 EAESLLEEALDKDAK-DPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChH
Confidence 555555555554322 44444444444444444433
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.12 E-value=0.0014 Score=72.24 Aligned_cols=239 Identities=15% Similarity=0.148 Sum_probs=150.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHH
Q 006012 189 QRLTPLTYNALISACARNDDLEKA-LNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQL 267 (664)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~ 267 (664)
+.-++...+.+=.+.+.-|..++| .++..+..+ ++...++.....+++ -++..... ....++..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~ 88 (694)
T PRK15179 24 PASGPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAAL-PELLDYVR--RYPHTELF 88 (694)
T ss_pred CCCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhH-HHHHHHHH--hccccHHH
Confidence 334555556565666677777666 344444432 222222222211111 12222222 34566888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006012 268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK 347 (664)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 347 (664)
+-.|.......|.+++|..+++...+.. +.+......+..++.+.+++++|+..+++....... +....+.+..++.+
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~ 166 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDE 166 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHH
Confidence 8888888888899999999998888753 334667778888888899999999998888876433 66777778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012 348 MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQV 427 (664)
Q Consensus 348 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 427 (664)
.|++++|..+|+++...+.. +..++..+...+-..|+.++|...|++..+.. .+....|+..+. +...-...
T Consensus 167 ~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~ 238 (694)
T PRK15179 167 IGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNADLAA 238 (694)
T ss_pred hcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHHHHH
Confidence 89999999999988874432 57788888888888899999998888887653 233344444332 23334445
Q ss_pred HHHHHHCC----CCCCHHHHHHHHHHHhc
Q 006012 428 LKEMKSSG----VEPDTHFYNVMIDTFGK 452 (664)
Q Consensus 428 ~~~m~~~g----~~~~~~~~~~li~~~~~ 452 (664)
++.+.-.+ .+....+...+|.-|.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 239 LRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 55543332 22333444444544444
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00097 Score=62.00 Aligned_cols=156 Identities=17% Similarity=0.149 Sum_probs=105.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006012 409 SRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC 488 (664)
Q Consensus 409 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 488 (664)
..+-..+...|+-+....+....... ..-|.......+....+.|++..|...+.+..... ++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44455556666655555555543321 13344555556777777777777777777776544 56777788887788888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 006012 489 GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECL 568 (664)
Q Consensus 489 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 568 (664)
|+++.|..-|.+..+-. +-+...++.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888887777777654 344566677777777778888888887777765432 6667777777777888888877764
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.10 E-value=0.0018 Score=71.41 Aligned_cols=220 Identities=9% Similarity=0.029 Sum_probs=150.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCCHH
Q 006012 260 KIELDGQLLNDVIVGFAKAGDASKAM-RFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKE--SGLKPRTK 336 (664)
Q Consensus 260 ~~~~d~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~~~~p~~~ 336 (664)
|...+......+=.+...-|..++|- +++.++.+ ...+.+.+..+..-+-++.. +....+..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (694)
T PRK15179 23 GPASGPTILDLLEAALAEPGESEEAGRELLQQARQ---------------VLERHAAVHKPAAALPELLDYVRRYPHTEL 87 (694)
T ss_pred CCCCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH---------------HHHHhhhhcchHhhHHHHHHHHHhccccHH
Confidence 33445555555556666667777764 34444332 33344444443333333322 22344678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006012 337 AYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYR 416 (664)
Q Consensus 337 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~ 416 (664)
.+-.|.......|..++|..+++...+.... +......++..+.+.+++++|+..+++..... +-+......+..++.
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHH
Confidence 8888888889999999999999998886433 46677778888899999999999999888765 446666777888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012 417 DRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEE 496 (664)
Q Consensus 417 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 496 (664)
+.|++++|..+|+++...+ +-+..++..+...+.+.|+.++|...|+...+.. .+...-|+..+ ++...-..
T Consensus 166 ~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~ 237 (694)
T PRK15179 166 EIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLA 237 (694)
T ss_pred HhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHH
Confidence 8999999999999988743 3457888888888889999999999999888653 34445555443 33444555
Q ss_pred HHHHHHHC
Q 006012 497 LFEEMQER 504 (664)
Q Consensus 497 ~~~~m~~~ 504 (664)
+++++.-.
T Consensus 238 ~~~~~~~~ 245 (694)
T PRK15179 238 ALRRLGVE 245 (694)
T ss_pred HHHHcCcc
Confidence 66666433
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.09 E-value=0.00019 Score=62.97 Aligned_cols=96 Identities=9% Similarity=-0.142 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006012 268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK 347 (664)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 347 (664)
+..+...+...|++++|...|+.+.... +.+...|..+..++.+.|++++|...|+.....+. .+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 4455667777788888888888777654 44677777778888888888888888888776543 366777777777778
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 006012 348 MGYLKDAEFVVSEMERSG 365 (664)
Q Consensus 348 ~g~~~~a~~~~~~m~~~g 365 (664)
.|+.++|...|+...+..
T Consensus 105 ~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 888888888888777653
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=6.6e-06 Score=52.23 Aligned_cols=34 Identities=35% Similarity=0.561 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCh
Q 006012 195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDF 228 (664)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 228 (664)
+||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999973
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.99 E-value=0.00031 Score=61.61 Aligned_cols=91 Identities=11% Similarity=-0.004 Sum_probs=41.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006012 412 LAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRY 491 (664)
Q Consensus 412 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 491 (664)
...+...|++++|...|+...... +.+...+..+...+.+.|++++|...|+...+.. +.+...+..+..++.+.|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 344444444444444444444332 2334444444444444444444444444444432 22344444444444444555
Q ss_pred HHHHHHHHHHHHC
Q 006012 492 DRAEELFEEMQER 504 (664)
Q Consensus 492 ~~A~~~~~~m~~~ 504 (664)
++|...|+...+.
T Consensus 109 ~eAi~~~~~Al~~ 121 (144)
T PRK15359 109 GLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHh
Confidence 5555544444443
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.95 E-value=0.0043 Score=62.83 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=54.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 006012 346 VKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPN-SFIYSRILAGYRDRGEWQRT 424 (664)
Q Consensus 346 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a 424 (664)
...|+.++|+..++.+...-. -|...+....+.+.+.++.++|.+.++++.... |+ ...+-.+..++.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHH
Confidence 344555555555555554422 134444444455555555555555555554432 22 33444445555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 006012 425 FQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMA 461 (664)
Q Consensus 425 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 461 (664)
+.+++...... +.|...|..|..+|...|+..++..
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 55555544332 3445555555555555555444443
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.91 E-value=1.7e-05 Score=49.93 Aligned_cols=33 Identities=42% Similarity=0.724 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 006012 194 LTYNALISACARNDDLEKALNLMSKMRQDGYHC 226 (664)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 226 (664)
.+||++|.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.89 E-value=2.4e-05 Score=49.58 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006012 593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD 625 (664)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 625 (664)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 799999999999999999999999999999998
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.88 E-value=0.00074 Score=58.58 Aligned_cols=97 Identities=11% Similarity=0.040 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLL 520 (664)
Q Consensus 441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 520 (664)
.....+...+.+.|++++|...++.+...+ +.+...|..+...|.+.|++++|..++++..+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334445555566666666666666665543 2355556666666666666666666666665554 44455555666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 006012 521 GEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 521 ~~~g~~~~a~~~~~~m~~~ 539 (664)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666654
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.012 Score=54.50 Aligned_cols=185 Identities=16% Similarity=0.148 Sum_probs=96.2
Q ss_pred CCHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012 419 GEWQRTFQVLKEMKS---SG-VEPDTH-FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR 493 (664)
Q Consensus 419 g~~~~a~~~~~~m~~---~g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 493 (664)
.+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++.+...- +-+...-..-..-+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 456666666666653 22 333332 23344445555666666666666665442 1111111111111233566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHH
Q 006012 494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSD 573 (664)
Q Consensus 494 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 573 (664)
|+++++.+++.+ +.|.+++-.-+-..-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-+++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClE---- 178 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLE---- 178 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHH----
Confidence 666666666665 555555555555555556555666666555554 44566666666666666666666655533
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 006012 574 QAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQ---RDAEAFAVLQYMKE 619 (664)
Q Consensus 574 ~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g---~~~~A~~~~~~m~~ 619 (664)
++.- +.|-. ..+..+...+.-.| +..-|.+++.+.++
T Consensus 179 -------E~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 179 -------ELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred -------HHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2222 23433 23444444444333 34445566666655
No 138
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.83 E-value=0.079 Score=57.83 Aligned_cols=217 Identities=18% Similarity=0.076 Sum_probs=145.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCchHHHHHHHHHH--HcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006012 140 NSSIDLAYAVVSWLQKHNLCYSYELLYSILIHA--LGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKAL 213 (664)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~ 213 (664)
.+.+..|++....+.+.. |+. .+...+.+ +.|.|+.++|..+ ......|..|...+-.+|.+.|+.++|.
T Consensus 22 ~~qfkkal~~~~kllkk~--Pn~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH--PNA--LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHHC--CCc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 456788999888888764 332 33333333 4578999999876 2223347789999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-C---------H
Q 006012 214 NLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSS--LLQKLYKEIECDKIELDGQLLNDVIVGFAKAG-D---------A 281 (664)
Q Consensus 214 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~--~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g-~---------~ 281 (664)
.+|++.... .|+......++.++.+.+.+... .+.++++ .++-....+=+++..+.+.- . .
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-----~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-----NFPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 999999876 57777777888888887765321 2334444 23444444444444444331 1 2
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006012 282 SKAMRFLGMAQGVG-LSPKTATYAAVITALSNSGRTIEAEAVFE-ELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVS 359 (664)
Q Consensus 282 ~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 359 (664)
.-|.+.++.+.+.+ ---+..-.......+-..|.+++|++++. ...+.-...+...-+.-+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 34566667666544 22233334445566677889999999994 44444344455666777888899999999999999
Q ss_pred HHHHCCCC
Q 006012 360 EMERSGVL 367 (664)
Q Consensus 360 ~m~~~g~~ 367 (664)
++...|..
T Consensus 251 ~Ll~k~~D 258 (932)
T KOG2053|consen 251 RLLEKGND 258 (932)
T ss_pred HHHHhCCc
Confidence 99888644
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.81 E-value=3.8e-05 Score=48.26 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006012 592 LALNSLINAFGEDQRDAEAFAVLQYMKENGLKP 624 (664)
Q Consensus 592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 624 (664)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.79 E-value=0.0012 Score=57.23 Aligned_cols=95 Identities=8% Similarity=0.153 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006012 408 YSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK 487 (664)
Q Consensus 408 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 487 (664)
...+...+...|++++|...++.+...+ +.+...+..+...+.+.|++++|...++...+.+ +.+...+..+...|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3444444555555555555555554433 3344555555555555555666666555555443 2344455555556666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 006012 488 CGRYDRAEELFEEMQER 504 (664)
Q Consensus 488 ~g~~~~A~~~~~~m~~~ 504 (664)
.|++++|...|++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666665554
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.71 E-value=0.12 Score=56.47 Aligned_cols=500 Identities=14% Similarity=0.074 Sum_probs=262.0
Q ss_pred hcCCChhhHHHHHHHHh-cCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hC--CCCCCHHHH
Q 006012 121 YRAVPAPLWHSLLKNLC-SSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQ--RQRLTPLTY 196 (664)
Q Consensus 121 ~~~~~~~~~~~~l~~l~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~--~~~~~~~~~ 196 (664)
.+..|..++..+|+.+. .+.|..++|..+.+.....+ +++..+...+.+.|...++.++|..+ .. ..-|+..-.
T Consensus 36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell 113 (932)
T KOG2053|consen 36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELL 113 (932)
T ss_pred HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHH
Confidence 44567777877887765 35677889998888776555 55788999999999999999999988 22 223345555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--------CChHHHHHHHHHHHhCC-CCCCHHH
Q 006012 197 NALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNK--------IDSSLLQKLYKEIECDK-IELDGQL 267 (664)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--------~~~~~~~~l~~~~~~~~-~~~d~~~ 267 (664)
..+--+|+|-+++.+-.+.--+|-+ .++-+.+.+=++++.....-. .-.+++++.++.+.+.+ .--...-
T Consensus 114 ~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE 192 (932)
T KOG2053|consen 114 YHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAE 192 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHH
Confidence 6666778888877664444333333 234445555455544443211 12245677777777765 1112222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006012 268 LNDVIVGFAKAGDASKAMRFLG-MAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV 346 (664)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 346 (664)
.-.-....-..|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++...|.. | |...++.+.
T Consensus 193 ~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~ 268 (932)
T KOG2053|consen 193 IILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVF 268 (932)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHH
Confidence 2222334556799999999984 4433333445556667788889999999999999999887643 2 333332211
Q ss_pred ----------------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCCCCHHH
Q 006012 347 ----------------KMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYA---NAGRWESARIVLKEMEVSHAKPNSFI 407 (664)
Q Consensus 347 ----------------~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~~~~~~~~~ 407 (664)
..+.++...+..++..... ....|-+-+.++. .-|+.+++...|-+- .|-. ..
T Consensus 269 klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~k---pc 340 (932)
T KOG2053|consen 269 KLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDK---PC 340 (932)
T ss_pred HHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCC---cH
Confidence 1223344444444433321 1122333333333 347777755443222 1111 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---------HHHHHHHHHHhccC-----CHHHHHHHHHHHH---HCC
Q 006012 408 YSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDT---------HFYNVMIDTFGKYN-----CLHHAMAAFDRML---SEG 470 (664)
Q Consensus 408 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~---------~~~~~li~~~~~~g-----~~~~A~~~~~~m~---~~g 470 (664)
|..=+..|...=..++...++....... ++. .+.+..+. .-.| .-+.-..++.+.. ++|
T Consensus 341 c~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~--rl~G~~~~l~ad~i~a~~~kl~~~ye~g 416 (932)
T KOG2053|consen 341 CAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLL--RLLGLYEKLPADSILAYVRKLKLTYEKG 416 (932)
T ss_pred hHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHH--HHhhccccCChHHHHHHHHHHHHHHhcc
Confidence 2222222222223333333333322211 111 11111111 1111 1122222222211 111
Q ss_pred ------CCCCHH---------HHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012 471 ------IEPDTI---------TWNTLIDCHFKCGRYD---RAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRL 532 (664)
Q Consensus 471 ------~~~~~~---------~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 532 (664)
+-|+.. +-+.|++.+-+.++.. +|+-+++.-.... +-|..+-..+|+.|+-.|-+..|.++
T Consensus 417 ls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~ 495 (932)
T KOG2053|consen 417 LSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYEL 495 (932)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHH
Confidence 122222 2366777888877765 3444444444443 44556666788888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012 533 LGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFA 612 (664)
Q Consensus 533 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 612 (664)
+..+--++++.|..-|. +...+...|++..+...++ +....|..-.. + +-..+.-|| +.|.+.+..+
T Consensus 496 y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~----~~lkfy~~~~k-----E--~~eyI~~AY-r~g~ySkI~e 562 (932)
T KOG2053|consen 496 YKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFN----EHLKFYDSSLK-----E--TPEYIALAY-RRGAYSKIPE 562 (932)
T ss_pred HHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHH----HHHHHHhhhhh-----h--hHHHHHHHH-HcCchhhhHH
Confidence 88887666665544332 3455566777777766654 22222322221 1 111122222 4555555544
Q ss_pred HH---HHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006012 613 VL---QYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFFN 653 (664)
Q Consensus 613 ~~---~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~~~ 653 (664)
+. ++|......--..+-+..++.++..++.++-...++-++
T Consensus 563 m~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 563 MLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 32 222211111122334556666677777777666666444
No 142
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=3.7e-05 Score=47.11 Aligned_cols=31 Identities=39% Similarity=0.696 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 006012 194 LTYNALISACARNDDLEKALNLMSKMRQDGY 224 (664)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 224 (664)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999999874
No 143
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.68 E-value=0.00075 Score=69.12 Aligned_cols=123 Identities=18% Similarity=0.137 Sum_probs=79.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHH
Q 006012 506 YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ--GLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMR 583 (664)
Q Consensus 506 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~ 583 (664)
.+.+......+++.+....+.+++..++.+.... ....-+.|..++++.|.+.|..+++++++. .=.
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~-----------n~~ 130 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLK-----------NRL 130 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHh-----------Chh
Confidence 3556666667777777777777777777766654 222233455677777777777666666533 333
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012 584 TDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRV 639 (664)
Q Consensus 584 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~ 639 (664)
..|+-||..+++.|++.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 131 ~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 131 QYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 45777777777777777777777777777777776666666666666555555554
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.68 E-value=0.0017 Score=66.33 Aligned_cols=125 Identities=13% Similarity=0.125 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006012 267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV 346 (664)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 346 (664)
....|+..+...++++.|+++|+++.+.. |+. ...+++.+...++-.+|.+++++..+.. +-+....+.-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33455666666788899999999888753 443 3457777777888888888888887653 236666777777788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 347 KMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEME 397 (664)
Q Consensus 347 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 397 (664)
+.++.+.|.++.+++.+..+. +..+|..|..+|.+.|+++.|+..+..+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888888876322 45688888888888888888888887664
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.66 E-value=0.0033 Score=55.23 Aligned_cols=124 Identities=19% Similarity=0.190 Sum_probs=68.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHH
Q 006012 268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK---TATYAAVITALSNSGRTIEAEAVFEELKESGLKPR--TKAYNALL 342 (664)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~~~~li 342 (664)
|..++..+ ..++...+.+.++.+.+.. +.+ ....-.+...+...|++++|...|+........++ ....-.|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33333333 3666666666666666543 222 22333344666667777777777777666542222 12333455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006012 343 KGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKE 395 (664)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 395 (664)
..+...|++++|...++...... .....+....+.|.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666677777777765543322 2344555566666667777776666654
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.053 Score=50.43 Aligned_cols=162 Identities=16% Similarity=0.161 Sum_probs=91.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006012 268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK 347 (664)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 347 (664)
|..++-+...+|+.+.|...++.+...- +.+...-..-...+-..|++++|.++|+.+++.+ +.|.+++.-=+...-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3444555566677777777777665532 2222222222223344567777777777777654 3355666655555556
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHH
Q 006012 348 MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG---EWQRT 424 (664)
Q Consensus 348 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a 424 (664)
.|+--+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.. |.+...+..+...+...| +..-+
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 66666666666665554 33467777777777777777777777777766432 334444444444444333 34445
Q ss_pred HHHHHHHHH
Q 006012 425 FQVLKEMKS 433 (664)
Q Consensus 425 ~~~~~~m~~ 433 (664)
.+.|....+
T Consensus 211 rkyy~~alk 219 (289)
T KOG3060|consen 211 RKYYERALK 219 (289)
T ss_pred HHHHHHHHH
Confidence 555555444
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.64 E-value=0.0021 Score=65.63 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=58.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006012 446 MIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQER 525 (664)
Q Consensus 446 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 525 (664)
++..+...+.++.|..+++++.+.. |+. ...++..+...++-.+|.+++++..+.. +-+...+..-.+.|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3334444455555555555555432 322 2234444445555555555555555432 3344444444445555555
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012 526 WEDVKRLLGNMRAQGLLP-NVVTYTTLVDIYGQSGRFDDAIECLE 569 (664)
Q Consensus 526 ~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (664)
++.|.++.+++.+. .| +..+|..|..+|.+.|++++|+-.++
T Consensus 250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 55555555555553 23 23455555555555555555555544
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.62 E-value=0.0023 Score=56.27 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 006012 523 QERWEDVKRLLGNMRAQGLLPN--VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS--NLALNSLI 598 (664)
Q Consensus 523 ~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li 598 (664)
.++...+...++.+......-. ......+...+...|++++|...|+ ........|+ ......|.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~-----------~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALE-----------KALANAPDPELKPLARLRLA 92 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHH-----------HHHhhCCCHHHHHHHHHHHH
Confidence 5566666666666665422111 1222334455666666666655533 3333221111 12334456
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 599 NAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 599 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
..+...|++++|+..++.... -......+...+++|.+.|++++|++.|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 677777788888777755332 22344566677778888888888887776
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.61 E-value=0.001 Score=68.21 Aligned_cols=123 Identities=17% Similarity=0.228 Sum_probs=86.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006012 296 LSPKTATYAAVITALSNSGRTIEAEAVFEELKES--GLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY 373 (664)
Q Consensus 296 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 373 (664)
.+.+......+++.+....+++++..++.+.... ....-..|..++|+.|.+.|..+.+..+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3456666666777777777777777777776653 22222345567778888888888888877777777877888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 006012 374 SLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR 418 (664)
Q Consensus 374 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~ 418 (664)
|.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888777777666666666666666666554
No 150
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.59 E-value=0.048 Score=57.55 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCC---HhHHHHHHH
Q 006012 593 ALNSLINAFGEDQRDAEAFAVLQYMKE-NGLKPDVVTYTTLMKALIRVDK---FHKVFSSYL 650 (664)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~a~~~~g~---~~~A~~~~~ 650 (664)
+|..|..-....|.++.|++.--.+.+ ..+-|-..+|..|.-+-+.... -.+|+.-++
T Consensus 1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 344444555567888888876555544 2456666777766554444333 344544433
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.57 E-value=0.0013 Score=52.86 Aligned_cols=77 Identities=18% Similarity=0.316 Sum_probs=49.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006012 271 VIVGFAKAGDASKAMRFLGMAQGVGL-SPKTATYAAVITALSNSG--------RTIEAEAVFEELKESGLKPRTKAYNAL 341 (664)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~l~~~m~~~~~~p~~~~~~~l 341 (664)
.|.-+...+++...-.+|+.+++.|+ -|++.+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455777777777777777777 677777777777666543 233456666666666666666666666
Q ss_pred HHHHHh
Q 006012 342 LKGYVK 347 (664)
Q Consensus 342 i~~~~~ 347 (664)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 665543
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.51 E-value=0.00011 Score=44.99 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006012 592 LALNSLINAFGEDQRDAEAFAVLQYMKENGL 622 (664)
Q Consensus 592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 622 (664)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998774
No 153
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.44 E-value=0.004 Score=50.07 Aligned_cols=87 Identities=17% Similarity=0.287 Sum_probs=61.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH
Q 006012 514 NIMINLLGEQERWEDVKRLLGNMRAQGL-LPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL 592 (664)
Q Consensus 514 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 592 (664)
...|..|...+++...-.+++.+++.|+ .|+..+|+.++.+.++..--..+ ++....+.+.+|+.|...+++|+..
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~---ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSED---IENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchh---HHHHHHHHHHHHHHHHHhccCCcHH
Confidence 3445556666888888888888888888 78888888888887765432222 2233445667788888888888888
Q ss_pred HHHHHHHHHHh
Q 006012 593 ALNSLINAFGE 603 (664)
Q Consensus 593 ~~~~li~~~~~ 603 (664)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 154
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.41 E-value=0.0018 Score=63.59 Aligned_cols=134 Identities=13% Similarity=-0.039 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHC
Q 006012 511 TTYNIMINLLGEQERWEDVKRLLGNMRA----QGLL-PNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTD 585 (664)
Q Consensus 511 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~ 585 (664)
..|..|.+.|.-.|+++.|....+.-.. .|-+ .....+..|..++.-.|+++.|.+.++.-..-|+++=++-.
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v-- 273 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV-- 273 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH--
Confidence 3456666666777889998877764332 2211 23467788889999999999999988755555544432222
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 586 GLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE----N-GLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 586 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
...+..+|.+.|.-...+++|+.++.+=+. . ...-....+++|..++...|..++|..+.+
T Consensus 274 ----EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 274 ----EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred ----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 234566788888888889999988776432 1 123356788999999999999999988877
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.39 E-value=0.0036 Score=49.57 Aligned_cols=93 Identities=22% Similarity=0.215 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006012 269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM 348 (664)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 348 (664)
..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.|+...+.... +..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 334455555666666666666655432 223345555555555666666666666555543221 234455555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 006012 349 GYLKDAEFVVSEMER 363 (664)
Q Consensus 349 g~~~~a~~~~~~m~~ 363 (664)
|+.+.|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 555555555555443
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.34 E-value=0.0042 Score=49.20 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=38.6
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006012 448 DTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWE 527 (664)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 527 (664)
..+...|++++|...++...+.. +.+...+..+...+...|++++|.+.++...... +.+..++..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 33344444444444444444332 1122334444444444455555555555444433 222234444444444555555
Q ss_pred HHHHHHHHHH
Q 006012 528 DVKRLLGNMR 537 (664)
Q Consensus 528 ~a~~~~~~m~ 537 (664)
+|...+.+..
T Consensus 86 ~a~~~~~~~~ 95 (100)
T cd00189 86 EALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 157
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.33 E-value=0.0036 Score=56.91 Aligned_cols=97 Identities=19% Similarity=0.373 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh-------hhHHHH
Q 006012 508 PCTTTYNIMINLLGE-----QERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE-------GLSDQA 575 (664)
Q Consensus 508 p~~~t~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-------~~~~~a 575 (664)
.+..+|..+++.+.+ .|..+=....++.|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+ ...+-|
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhccCcHHHHHH
Confidence 345566666666543 35566666667777777777777777777777665 3322 111222 334557
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006012 576 VNAFRVMRTDGLKPSNLALNSLINAFGEDQR 606 (664)
Q Consensus 576 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 606 (664)
++++++|...|+-||..++..+++.+++.+.
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8889999999999999999999999965554
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.25 E-value=0.013 Score=49.19 Aligned_cols=59 Identities=17% Similarity=0.066 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012 340 ALLKGYVKMGYLKDAEFVVSEMERSGVL--PDEHTYSLLIDAYANAGRWESARIVLKEMEV 398 (664)
Q Consensus 340 ~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 398 (664)
.+..++.+.|+++.|...++.+...... ....++..+...+.+.|+.++|...++++..
T Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 44 WLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 3444444444444444444444332111 0122333344444444444444444444443
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.25 E-value=0.013 Score=49.20 Aligned_cols=100 Identities=15% Similarity=0.034 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 006012 267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLS--PKTATYAAVITALSNSGRTIEAEAVFEELKESGLK--PRTKAYNALL 342 (664)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p~~~~~~~li 342 (664)
++-.+...+.+.|++++|.+.|+.+.+.... .....+..+...+.+.|++++|.+.|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4556677788899999999999999865311 12456777899999999999999999998875322 1245677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC
Q 006012 343 KGYVKMGYLKDAEFVVSEMERSGV 366 (664)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~m~~~g~ 366 (664)
.++.+.|+.++|.+.++++.+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 889999999999999999988753
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.21 E-value=0.1 Score=51.72 Aligned_cols=112 Identities=19% Similarity=0.386 Sum_probs=53.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHh
Q 006012 378 DAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR-GEWQRTFQVLKEMKS----SGVE-PDTHFYNVMIDTFG 451 (664)
Q Consensus 378 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~----~g~~-~~~~~~~~li~~~~ 451 (664)
..|...|++..|-+++..+- ..|... |++++|++.|.+... .+.. .-..++..+...+.
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 44556666666655555443 334444 566666666655432 1100 01233445555666
Q ss_pred ccCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006012 452 KYNCLHHAMAAFDRMLSEGIE-----PDTI-TWNTLIDCHFKCGRYDRAEELFEEMQER 504 (664)
Q Consensus 452 ~~g~~~~A~~~~~~m~~~g~~-----~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (664)
+.|++++|.++|+++...... .+.. .+-..+-++...|++-.|.+.|++....
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 667777777777666653211 1111 1222233455566777777777766544
No 161
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.20 E-value=0.0079 Score=54.73 Aligned_cols=104 Identities=12% Similarity=0.187 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCH
Q 006012 191 LTPLTYNALISACAR-----NDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDG 265 (664)
Q Consensus 191 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~ 265 (664)
.+-.+|..+|..|.+ .|.++=....+..|.+.|+.-|..+|+.||..+-+..-... .+|+.+--.
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~----n~fQ~~F~h------ 114 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPR----NFFQAEFMH------ 114 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccc----cHHHHHhcc------
Confidence 344555555555543 35666666677788888888888888888876665222211 122221110
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006012 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR 315 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 315 (664)
.-.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 115 -----------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 -----------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 112345566666666666666666666666666665554
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.18 E-value=0.013 Score=50.78 Aligned_cols=93 Identities=10% Similarity=-0.025 Sum_probs=64.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006012 269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM 348 (664)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 348 (664)
-.+...+...|++++|..+|+.+...+ +-+..-|..|..++-..|++++|++.|.......+ -|...+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 344455667778888888877776643 33556666777777777777777777777776654 3666677777777777
Q ss_pred CCHHHHHHHHHHHHH
Q 006012 349 GYLKDAEFVVSEMER 363 (664)
Q Consensus 349 g~~~~a~~~~~~m~~ 363 (664)
|+.+.|.+.|+..+.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777776654
No 163
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.13 E-value=0.043 Score=54.38 Aligned_cols=50 Identities=22% Similarity=0.213 Sum_probs=36.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHH
Q 006012 274 GFAKAGDASKAMRFLGMAQGVGLSPK----TATYAAVITALSNSGRTIEAEAVFE 324 (664)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~l~~ 324 (664)
-+|+.|+....+.+|+..++.|. .| ...|..|..+|.-.+++++|++...
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 46788888888888888888773 23 3346667777777788888877654
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.12 E-value=0.018 Score=50.04 Aligned_cols=97 Identities=11% Similarity=-0.046 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012 300 TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDA 379 (664)
Q Consensus 300 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 379 (664)
....-.+...+...|++++|.++|+.+...... +..-|-.|..++-..|++++|+..|.......+. |...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 334555566677788888888888877765432 5566667777777778888888888887776643 67777777777
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 006012 380 YANAGRWESARIVLKEMEV 398 (664)
Q Consensus 380 ~~~~g~~~~A~~l~~~m~~ 398 (664)
+...|+.+.|.+.|+..+.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888877776654
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.12 E-value=0.034 Score=50.48 Aligned_cols=91 Identities=14% Similarity=0.099 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006012 264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK--TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL 341 (664)
Q Consensus 264 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 341 (664)
....+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 445667777788888999999999988876432222 457888888888899999999998888875322 45666677
Q ss_pred HHHHHhcCCHHHHH
Q 006012 342 LKGYVKMGYLKDAE 355 (664)
Q Consensus 342 i~~~~~~g~~~~a~ 355 (664)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777777654443
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.10 E-value=0.018 Score=56.82 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006012 267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSN-SGRTIEAEAVFEELKESGLKPRTKAYNALLKGY 345 (664)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 345 (664)
+|-.++...-+.+..+.|..+|.++.+.+ ..+...|......-.+ .++.+.|.++|+...+. ...+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555666666666665432 1223333333333222 34444466666665553 333555566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012 346 VKMGYLKDAEFVVSEMERSGVLPDE----HTYSLLIDAYANAGRWESARIVLKEMEV 398 (664)
Q Consensus 346 ~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~ 398 (664)
.+.++.+.|..+|++.... + +.. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666543 1 222 3556666655566666666666655554
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.10 E-value=0.0073 Score=57.47 Aligned_cols=95 Identities=20% Similarity=0.254 Sum_probs=45.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 006012 521 GEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLIN 599 (664)
Q Consensus 521 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~ 599 (664)
.+.+++.+|...|.+.++.... |.+-|..-..+|++.|.++.|++-.+..+ . +.|.. .+|..|..
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al-----------~--iDp~yskay~RLG~ 157 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESAL-----------S--IDPHYSKAYGRLGL 157 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHH-----------h--cChHHHHHHHHHHH
Confidence 3445555555555555554222 44444445555555555555544322100 0 22221 24555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006012 600 AFGEDQRDAEAFAVLQYMKENGLKPDVVTYTT 631 (664)
Q Consensus 600 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 631 (664)
+|...|++++|++.|++.++ +.|+-.+|..
T Consensus 158 A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 158 AYLALGKYEEAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHccCcHHHHHHHHHhhhc--cCCCcHHHHH
Confidence 55555555555555555555 4554444443
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.07 E-value=0.31 Score=46.85 Aligned_cols=57 Identities=18% Similarity=0.054 Sum_probs=26.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 307 ITALSNSGRTIEAEAVFEELKESGLKPRTKA---YNALLKGYVKMGYLKDAEFVVSEMERS 364 (664)
Q Consensus 307 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~ 364 (664)
...+.+.|++++|.+.|+.+...-... ... .-.+..++.+.+++++|...+++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333444555555555555555432211 111 123344455555555555555555544
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.06 E-value=0.022 Score=51.44 Aligned_cols=105 Identities=11% Similarity=-0.017 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012 475 TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP--CTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLV 552 (664)
Q Consensus 475 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 552 (664)
...|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|.+.+++...... ....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 4456666667777788888888888876553122 234677777788888888888888888776522 2344555555
Q ss_pred HHHH-------hcCChHHHHHHHhhhHHHHHHHHHHHHH
Q 006012 553 DIYG-------QSGRFDDAIECLEGLSDQAVNAFRVMRT 584 (664)
Q Consensus 553 ~~~~-------~~g~~~~A~~~~~~~~~~a~~~~~~m~~ 584 (664)
..+. +.|+++.|...+ ++|...|++...
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~----~~a~~~~~~a~~ 148 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWF----DQAAEYWKQAIA 148 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHH----HHHHHHHHHHHH
Confidence 5665 677777766543 345555555543
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.05 E-value=0.15 Score=54.80 Aligned_cols=158 Identities=14% Similarity=0.052 Sum_probs=87.1
Q ss_pred HHHHHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhc
Q 006012 168 ILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARN--D---DLEKALNLMSKMRQDGYHCDF-INYSLVIQSLTRT 241 (664)
Q Consensus 168 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 241 (664)
.++.++...-...+........+.|..+|...+++.... + ...+|+.+|++..+.. |+. ..|..+..++...
T Consensus 312 ~Ia~aL~~~l~~~e~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~ 389 (517)
T PRK10153 312 SLSRALNQPWPERMQERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVR 389 (517)
T ss_pred HHHHHhCccccHHHHHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHH
Confidence 344444333223333334566778899999999886543 2 3779999999999874 554 3343332222221
Q ss_pred CCCC---hHHHHHHHHHHHh---C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006012 242 NKID---SSLLQKLYKEIEC---D-KIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG 314 (664)
Q Consensus 242 g~~~---~~~~~~l~~~~~~---~-~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 314 (664)
..+. +.......+...+ . ..+.+...|.++.-.+...|++++|...++++...+ |+...|..+...+...|
T Consensus 390 ~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G 467 (517)
T PRK10153 390 HSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKG 467 (517)
T ss_pred HhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcC
Confidence 1111 1111122222211 1 123344556655555555667777777776666643 46666666666666667
Q ss_pred ChHHHHHHHHHHHHc
Q 006012 315 RTIEAEAVFEELKES 329 (664)
Q Consensus 315 ~~~~A~~l~~~m~~~ 329 (664)
+.++|.+.|++....
T Consensus 468 ~~~eA~~~~~~A~~L 482 (517)
T PRK10153 468 DNRLAADAYSTAFNL 482 (517)
T ss_pred CHHHHHHHHHHHHhc
Confidence 777766666666553
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.03 E-value=0.014 Score=52.77 Aligned_cols=96 Identities=16% Similarity=0.058 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012 440 THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEP--DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMI 517 (664)
Q Consensus 440 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 517 (664)
...+..+...+...|++++|+..|+........+ ...+|..+...|...|++++|++.+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3444555555666677777777776666442121 12356666677777777777777777776553 33344455555
Q ss_pred HHHH-------hcCCHHHHHHHHHHH
Q 006012 518 NLLG-------EQERWEDVKRLLGNM 536 (664)
Q Consensus 518 ~~~~-------~~g~~~~a~~~~~~m 536 (664)
..+. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 5555 666766555555443
No 172
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.02 E-value=0.44 Score=47.68 Aligned_cols=106 Identities=13% Similarity=0.164 Sum_probs=81.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG 521 (664)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 521 (664)
+.+..|.-+...|+...|.++-.+.. -|+...|-..+.+|+..+++++-.++... + -+++-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 44555666777888888888866663 58888999999999999999887776542 1 23477888999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006012 522 EQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIEC 567 (664)
Q Consensus 522 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 567 (664)
+.|+..+|..++.++ . +..-+..|.++|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 999999998888772 1 25567888999999998765
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.01 E-value=0.017 Score=59.23 Aligned_cols=93 Identities=9% Similarity=0.030 Sum_probs=74.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006012 411 ILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR 490 (664)
Q Consensus 411 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 490 (664)
....+...|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 3556677888999999998888764 4567778888888888899999999888888764 3456778888888888899
Q ss_pred HHHHHHHHHHHHHCC
Q 006012 491 YDRAEELFEEMQERG 505 (664)
Q Consensus 491 ~~~A~~~~~~m~~~~ 505 (664)
+++|+..|++.++.+
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999988888764
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.01 E-value=0.059 Score=48.87 Aligned_cols=112 Identities=11% Similarity=0.066 Sum_probs=48.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 444 NVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD--TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG 521 (664)
Q Consensus 444 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 521 (664)
..+...+...|++++|...|++..+....+. ...+..+...|.+.|++++|...+++..... +-+...+..+...+.
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3333344444444444444444443221111 2334444444445555555555555444432 122333333334443
Q ss_pred hcCC--------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006012 522 EQER--------------WEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGR 560 (664)
Q Consensus 522 ~~g~--------------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 560 (664)
..|+ +++|.+++.+.... ++..|..++..+...|+
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNWLKTTGR 166 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHHHHhcCc
Confidence 3333 45566666665553 22235555555554443
No 175
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.00 E-value=0.018 Score=56.85 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 407 IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDT-FGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCH 485 (664)
Q Consensus 407 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 485 (664)
+|..+++...+.+..+.|..+|.+.++.+ ..+..+|...... |...++.+.|.++|+...+. +..+...|..-++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444444444444444555554444321 1122222222222 11123344455555554443 233444455555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 486 FKCGRYDRAEELFEEMQERGYFPC---TTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (664)
Q Consensus 486 ~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 538 (664)
.+.|+.+.|..+|++.... +.++ ...|...++-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555443 1111 12455555544555555555555555544
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.99 E-value=0.2 Score=48.21 Aligned_cols=177 Identities=11% Similarity=0.063 Sum_probs=90.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006012 340 ALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY---SLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYR 416 (664)
Q Consensus 340 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~ 416 (664)
.....+.+.|++++|.+.|+.+...-... .... -.++.+|.+.+++++|...+++..+........-+...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 34455566788888888888887754332 2222 3456677788888888888888877654333333433333332
Q ss_pred h--cC---------------C---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 006012 417 D--RG---------------E---WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTI 476 (664)
Q Consensus 417 ~--~g---------------~---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 476 (664)
. .+ + ..+|++.|+.+++ -|-...-..+|...+..+... . ..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~---l-a~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR---L-AK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH---H-HH
Confidence 1 10 1 1122233333322 222222233443333333211 0 00
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012 477 TWNTLIDCHFKCGRYDRAEELFEEMQER--GYFPCTTTYNIMINLLGEQERWEDVKRLLGNM 536 (664)
Q Consensus 477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 536 (664)
.--.+..-|.+.|.+..|..-++.++++ +.+........++.+|...|..++|.++...+
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1113344566666666666666666654 22333444555566666666666666555444
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.99 E-value=0.049 Score=58.44 Aligned_cols=142 Identities=16% Similarity=0.066 Sum_probs=78.2
Q ss_pred CCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHH
Q 006012 472 EPDTITWNTLIDCHFKCG-----RYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQ--------ERWEDVKRLLGNMRA 538 (664)
Q Consensus 472 ~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--------g~~~~a~~~~~~m~~ 538 (664)
+.+...|...+.+..... ..++|..+|++.++.+ +-....|..+..++... .++..+.+...+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 344455555555433211 2445666666666554 22233333332222111 122334444444333
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012 539 Q-GLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYM 617 (664)
Q Consensus 539 ~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 617 (664)
. ....++..|.++.-.....|++++|...++ +... +.|+...|..+...+...|+.++|.+.+++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~-----------rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAIN-----------KAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHH-----------HHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 123355677777666666788877776643 3333 3467778888888888888888888888888
Q ss_pred HHCCCCCCHHHH
Q 006012 618 KENGLKPDVVTY 629 (664)
Q Consensus 618 ~~~g~~p~~~~~ 629 (664)
.. +.|...+|
T Consensus 480 ~~--L~P~~pt~ 489 (517)
T PRK10153 480 FN--LRPGENTL 489 (517)
T ss_pred Hh--cCCCCchH
Confidence 77 45554443
No 178
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.98 E-value=0.03 Score=57.40 Aligned_cols=92 Identities=17% Similarity=0.043 Sum_probs=72.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006012 272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYL 351 (664)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 351 (664)
...+...|++++|++.|+++++.. +.+...|..+..++.+.|++++|+..++++++... .+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 344567788999999998888764 44677888888888888999999998888887543 2567788888888888999
Q ss_pred HHHHHHHHHHHHCC
Q 006012 352 KDAEFVVSEMERSG 365 (664)
Q Consensus 352 ~~a~~~~~~m~~~g 365 (664)
++|...|++..+..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 99998888888764
No 179
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.48 Score=47.42 Aligned_cols=57 Identities=18% Similarity=0.074 Sum_probs=39.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006012 271 VIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKE 328 (664)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 328 (664)
....+.+..++.+|+..+..+.+.. +.+..-|..-...+...|++++|.--.+.-.+
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r 111 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVR 111 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhhee
Confidence 3445677788888888888888765 33456666677777777888877766655443
No 180
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.93 E-value=0.002 Score=50.51 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=7.0
Q ss_pred HHHHHHhcCChHHHHHHH
Q 006012 306 VITALSNSGRTIEAEAVF 323 (664)
Q Consensus 306 li~~~~~~g~~~~A~~l~ 323 (664)
+..++.+.|++++|.+++
T Consensus 31 la~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 333333333333333333
No 181
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.92 E-value=0.0021 Score=50.34 Aligned_cols=20 Identities=40% Similarity=0.865 Sum_probs=8.2
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 006012 481 LIDCHFKCGRYDRAEELFEE 500 (664)
Q Consensus 481 li~~~~~~g~~~~A~~~~~~ 500 (664)
+..+|.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33344444444444444433
No 182
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.9 Score=49.04 Aligned_cols=108 Identities=17% Similarity=0.320 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 477 TWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYG 556 (664)
Q Consensus 477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 556 (664)
+.+--+.-+...|+-.+|.++-.+.. .||...|-.-+.+++..++|++.+++-+.+. .+.-|.-.+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444455666788888877766553 4677777778888888888888777665543 2455667788888
Q ss_pred hcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012 557 QSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVL 614 (664)
Q Consensus 557 ~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 614 (664)
+.|+.++|.+++.. + ++ +.-.+.+|.+.|++.+|.++-
T Consensus 756 ~~~n~~EA~KYipr----------------v-~~---l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPR----------------V-GG---LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhc----------------c-CC---hHHHHHHHHHhccHHHHHHHH
Confidence 88888888777431 1 11 115667777888888877753
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.85 E-value=0.17 Score=50.14 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=38.1
Q ss_pred HHHhc-CChHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHH
Q 006012 309 ALSNS-GRTIEAEAVFEELKE----SGLKP-RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLP-----DEH-TYSLL 376 (664)
Q Consensus 309 ~~~~~-g~~~~A~~l~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-----~~~-~~~~l 376 (664)
.|-.. |++++|.+.|++..+ .+.+- -..++..+...+.+.|++++|.++|+++...-... +.. .+-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 555666555555433 11000 12234445555666666666666666655432211 111 11122
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 006012 377 IDAYANAGRWESARIVLKEMEV 398 (664)
Q Consensus 377 i~~~~~~g~~~~A~~l~~~m~~ 398 (664)
+-++...|+...|.+.+++...
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 2234445556666666555543
No 184
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.75 E-value=0.017 Score=55.02 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=54.5
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012 451 GKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVK 530 (664)
Q Consensus 451 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 530 (664)
.+.+++++|...|.+.++.. +.|.+.|..-..+|++.|.++.|++-.+..+..+ +-...+|..|..+|...|++++|.
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 44555666666666665543 2345555555666666666666666666655554 333455666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHH
Q 006012 531 RLLGNMRAQGLLPNVVTYT 549 (664)
Q Consensus 531 ~~~~~m~~~~~~p~~~~~~ 549 (664)
+.|++.++ +.|+-.+|-
T Consensus 170 ~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHhhhc--cCCCcHHHH
Confidence 66666555 445544443
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.74 E-value=0.3 Score=43.31 Aligned_cols=96 Identities=10% Similarity=0.096 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 006012 472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PNVVTYTT 550 (664)
Q Consensus 472 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ 550 (664)
.|++..--.|..+....|++.+|...|++...--+.-|......+.++....+++..|...++++.+.+.. -++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444444555555555555555555555544433444555555555555555555555555555443210 01122233
Q ss_pred HHHHHHhcCChHHHHHH
Q 006012 551 LVDIYGQSGRFDDAIEC 567 (664)
Q Consensus 551 li~~~~~~g~~~~A~~~ 567 (664)
+...|...|++.+|...
T Consensus 166 ~aR~laa~g~~a~Aesa 182 (251)
T COG4700 166 FARTLAAQGKYADAESA 182 (251)
T ss_pred HHHHHHhcCCchhHHHH
Confidence 44455555555544443
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.70 E-value=0.2 Score=52.72 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=26.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006012 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQE 503 (664)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 503 (664)
+...+...+-+...+.-|-++|..|-+ ...+++.....+++++|+.+-++..+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 333333344444455555566655532 12344555556666666666555443
No 187
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.60 E-value=1 Score=45.82 Aligned_cols=365 Identities=14% Similarity=0.127 Sum_probs=193.0
Q ss_pred HHHcCCHHHHHHHHHHHHhC--CCC------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHH
Q 006012 275 FAKAGDASKAMRFLGMAQGV--GLS------------PKTATYAAVITALSNSGRTIEAEAVFEELKESG----LKPRTK 336 (664)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~--g~~------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----~~p~~~ 336 (664)
+.+.+++++|++.+..-... +.. +|..-=+..++.+...|++.+++.++++|...= ...+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 34667777777776544332 211 122223456677888888888888888876533 336778
Q ss_pred HHHHHHHHHHhcCC---------------HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 006012 337 AYNALLKGYVKMGY---------------LKDAEFVVSEMERS------GVLPDEHTYSLLIDAYANA--GRWESARIVL 393 (664)
Q Consensus 337 ~~~~li~~~~~~g~---------------~~~a~~~~~~m~~~------g~~~~~~~~~~li~~~~~~--g~~~~A~~l~ 393 (664)
+||.++-.+.++=- ++.+.-..++|... .+.|.......++....-. .+..--.+++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 88876666655311 11122222222211 1222222233333322211 1222233444
Q ss_pred HHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 006012 394 KEMEVSHAKPNSF-IYSRILAGYRDRGEWQRTFQVLKEMKSSGVE----PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLS 468 (664)
Q Consensus 394 ~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 468 (664)
+.....-+.|+.. +...+...+.+ +.+++..+.+.+....+. --..++..++....+.++...|.+.+..+.-
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 4444444455533 23334444443 455555555554332211 1245677788888888999999888887765
Q ss_pred CCCCCCHHHH-------HHHHHHHH----HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhcCC-HHHHHHHH
Q 006012 469 EGIEPDTITW-------NTLIDCHF----KCGRYDRAEELFEEMQERGYFPCTTTYNIMIN---LLGEQER-WEDVKRLL 533 (664)
Q Consensus 469 ~g~~~~~~~~-------~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~---~~~~~g~-~~~a~~~~ 533 (664)
.. |+...- ..+-+..| ..-+..+=+.+|++....++. .......++. -+-+.|. -++|..++
T Consensus 327 ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 327 LD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred cC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 42 332211 11222222 112233445566666655421 1222233333 2334455 78899999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH----HHHHHHHH--HHhcCCH
Q 006012 534 GNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL----ALNSLINA--FGEDQRD 607 (664)
Q Consensus 534 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~--~~~~g~~ 607 (664)
+.+.+. .+...-.-..+.-+.|. .+..|+.. ....+-+.+-+-+.+.|+.|-.+ .-|.|.+| +...|++
T Consensus 404 k~il~f--t~yD~ec~n~v~~fvKq-~Y~qaLs~--~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 404 KLILQF--TNYDIECENIVFLFVKQ-AYKQALSM--HAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHh--ccccHHHHHHHHHHHHH-HHHHHHhh--hhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 888874 33222222222222222 12222221 12222223333444567776433 34455433 4678999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 006012 608 AEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLF 651 (664)
Q Consensus 608 ~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~ 651 (664)
.++.-+-....+ +.|++.+|..++-++....+++||+.++..
T Consensus 479 ~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 479 HKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 999888777776 899999999999999999999999998873
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.51 E-value=0.0099 Score=44.17 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=27.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006012 277 KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES 329 (664)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 329 (664)
+.|++++|++.|+.+.... +-+...+..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555555555555432 224455555555555555555555555555543
No 189
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.3 Score=48.85 Aligned_cols=224 Identities=13% Similarity=0.033 Sum_probs=111.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006012 308 TALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWE 387 (664)
Q Consensus 308 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 387 (664)
..+.+..++.+|+..+...++.... +..-|..=...+...|+++++.--.+.-.+.... ....+.-.-.++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHH
Confidence 4566778888899999888876543 4555555555666666666665554443332100 1112222222222333333
Q ss_pred HHHHHHH------------H---HHhcC-CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--
Q 006012 388 SARIVLK------------E---MEVSH-AKPNSFIYSRI-LAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMID-- 448 (664)
Q Consensus 388 ~A~~l~~------------~---m~~~~-~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~-- 448 (664)
+|...++ . ..... -+|...+|..+ ..++...|++++|.+.-....+.. ....+...++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhccc
Confidence 3333322 1 11111 12223333333 234555677777776665555432 1122233333
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH---HHHH----------HHHcCCHHHHHHHHHHHHHC---CCCCCHHH
Q 006012 449 TFGKYNCLHHAMAAFDRMLSEGIEPDTITWNT---LIDC----------HFKCGRYDRAEELFEEMQER---GYFPCTTT 512 (664)
Q Consensus 449 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---li~~----------~~~~g~~~~A~~~~~~m~~~---~~~p~~~t 512 (664)
++.-.++.+.+...|++.++.+ |+...-.. .... ..+.|.+.+|.+.|.+.+.. +..|+...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 2334566777777777776653 33222111 1111 23456666666666666543 33444555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 513 YNIMINLLGEQERWEDVKRLLGNMRA 538 (664)
Q Consensus 513 ~~~ll~~~~~~g~~~~a~~~~~~m~~ 538 (664)
|.....+..+.|+.++|+.-.++..+
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhh
Confidence 55555556666666666666665554
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.47 E-value=0.38 Score=50.70 Aligned_cols=94 Identities=19% Similarity=0.258 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHH---------HHHHHcCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCC
Q 006012 298 PKTATYAAVITALSNSGRTIEAEAVF---------EELKESGLKPRTKAYNALLKGYVKMGYL--KDAEFVVSEMERSGV 366 (664)
Q Consensus 298 ~~~~~~~~li~~~~~~g~~~~A~~l~---------~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~ 366 (664)
+-.+.+.+-+..|...|.+++|.++- +.+.... .+.-.++..=.+|.+..+. -+...-++++.++|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A--LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA--LEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHHH--HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 33444555555666667666665431 1111110 1223344555566655543 344445566777777
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012 367 LPDEHTYSLLIDAYANAGRWESARIVLKEM 396 (664)
Q Consensus 367 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 396 (664)
.|+... +...++-.|++.+|-++|.+-
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 677654 344566677777777777653
No 191
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.46 E-value=1.6 Score=46.61 Aligned_cols=52 Identities=15% Similarity=0.099 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHH
Q 006012 513 YNIMINLLGEQERWEDVKRLLGNMRAQ-GLLPNVVTYTTLVDIYGQSGRFDDA 564 (664)
Q Consensus 513 ~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A 564 (664)
|..|..--...|..+.|.+.--.+.+. ++-|...+|+.|.-+-|....+.-.
T Consensus 1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtC 1076 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTC 1076 (1189)
T ss_pred HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhh
Confidence 334444445567777777655444443 5667778887776665555444433
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.45 E-value=0.016 Score=42.60 Aligned_cols=57 Identities=21% Similarity=0.170 Sum_probs=40.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006012 272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES 329 (664)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 329 (664)
...+.+.|++++|.+.|+.+.+.. +-+...+..+..++.+.|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455667777777777777777764 335667777777777777777777777777654
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.45 E-value=0.2 Score=41.92 Aligned_cols=90 Identities=23% Similarity=0.144 Sum_probs=50.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhc
Q 006012 273 VGFAKAGDASKAMRFLGMAQGVGLSPK--TATYAAVITALSNSGRTIEAEAVFEELKESGLK--PRTKAYNALLKGYVKM 348 (664)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p~~~~~~~li~~~~~~ 348 (664)
.++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++....... .+......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 345556777777777777776665443 334555666667777777777777666553211 0111122233355566
Q ss_pred CCHHHHHHHHHHHH
Q 006012 349 GYLKDAEFVVSEME 362 (664)
Q Consensus 349 g~~~~a~~~~~~m~ 362 (664)
|+.++|.+.+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666655444
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.33 Score=45.48 Aligned_cols=143 Identities=11% Similarity=0.047 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----
Q 006012 407 IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLI---- 482 (664)
Q Consensus 407 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li---- 482 (664)
+.+.++.++.-.|++.-....+++.++...+.++.....+...-.+.|+.+.|...|++..+..-..+....+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445566666677777777777777776656677777888888888888888888888776543333433333333
Q ss_pred -HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012 483 -DCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLV 552 (664)
Q Consensus 483 -~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 552 (664)
..|.-.+++..|...+.++...+ .-+....|.-.-+..-.|+...|.+.+..|... .|.+.+-++++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 34555677888888888887776 345555555554555678888888888888875 45555444443
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.39 E-value=0.015 Score=43.28 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 006012 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG-RTIEAEAVFEELKE 328 (664)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~ 328 (664)
..+|..+...+...|++++|+..|++..+.+ +.+...|..+..++.+.| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4456666666666677777777666666643 234556666666666666 56666666666554
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.38 E-value=0.016 Score=43.09 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=31.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 311 SNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERS 364 (664)
Q Consensus 311 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 364 (664)
.+.|++++|+++|+.+...... +...+..+..+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456666666666666654332 5555556666666666666666666666654
No 197
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.47 Score=45.78 Aligned_cols=101 Identities=15% Similarity=0.055 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCHHHH
Q 006012 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG---RTIEAEAVFEELKESGLKPRTKAY 338 (664)
Q Consensus 262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~~p~~~~~ 338 (664)
+-|..-|-.|...|...|+++.|...|....+.. .++...+..+..++.... ...++.++|+++.+... -|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHH
Confidence 5566777777777777777777777777766643 345555555555544332 24566666766665432 255555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 339 NALLKGYVKMGYLKDAEFVVSEMERS 364 (664)
Q Consensus 339 ~~li~~~~~~g~~~~a~~~~~~m~~~ 364 (664)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55666666667777777777776665
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.29 E-value=0.019 Score=42.76 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 006012 475 TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE-RWEDVKRLLGNMRA 538 (664)
Q Consensus 475 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~ 538 (664)
...|..+...+.+.|++++|+..|++.++.+ +.+...|..+..++...| ++++|.+.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555556666666666666655554 334555555555555555 45566655555544
No 199
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.26 E-value=0.019 Score=42.24 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=29.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 483 DCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (664)
Q Consensus 483 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 538 (664)
..+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|...++++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555566666665555554 33445555555555555666665555555554
No 200
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.23 E-value=0.44 Score=44.49 Aligned_cols=80 Identities=11% Similarity=0.071 Sum_probs=40.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhc
Q 006012 481 LIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ--GLLPNVVTYTTLVDIYGQS 558 (664)
Q Consensus 481 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~ 558 (664)
++.-|=......+|...+..+.+.= ...-..+.+-|.+.|.+..|..-++.+++. +..-.......++.+|.+.
T Consensus 116 li~~yP~S~y~~~A~~~l~~l~~~l----a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l 191 (203)
T PF13525_consen 116 LIKRYPNSEYAEEAKKRLAELRNRL----AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKL 191 (203)
T ss_dssp HHHH-TTSTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHCcCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 3333434444555555444443320 111122455677777777777777777765 1111134456667777777
Q ss_pred CChHHH
Q 006012 559 GRFDDA 564 (664)
Q Consensus 559 g~~~~A 564 (664)
|..+.|
T Consensus 192 ~~~~~a 197 (203)
T PF13525_consen 192 GLKQAA 197 (203)
T ss_dssp T-HHHH
T ss_pred CChHHH
Confidence 776644
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.19 E-value=0.31 Score=40.78 Aligned_cols=87 Identities=20% Similarity=0.131 Sum_probs=50.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHh
Q 006012 482 IDCHFKCGRYDRAEELFEEMQERGYFPC--TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL--PNVVTYTTLVDIYGQ 557 (664)
Q Consensus 482 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~ 557 (664)
..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++....... -+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3445566777777777777777664433 234445556667777777777777777654211 011222223345666
Q ss_pred cCChHHHHHHH
Q 006012 558 SGRFDDAIECL 568 (664)
Q Consensus 558 ~g~~~~A~~~~ 568 (664)
.|+.++|++.+
T Consensus 88 ~gr~~eAl~~~ 98 (120)
T PF12688_consen 88 LGRPKEALEWL 98 (120)
T ss_pred CCCHHHHHHHH
Confidence 77777776654
No 202
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.09 E-value=2 Score=43.84 Aligned_cols=216 Identities=15% Similarity=0.129 Sum_probs=106.8
Q ss_pred hhHHHHHHhhhcCCChhhHHHHHHHH-hcCCCChHHHHHHHHHHHHc--CCC-----------CchHHHHHHHHHHHccc
Q 006012 111 NRVEFKLAESYRAVPAPLWHSLLKNL-CSSNSSIDLAYAVVSWLQKH--NLC-----------YSYELLYSILIHALGRS 176 (664)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~~~a~~~~~~~~~~--~~~-----------~~~~~~~~~li~~~~~~ 176 (664)
+..+..+.+-.+..+.+.|..+...+ +...+.++.|.+.+..-.++ +.. .++-++-++.++.+...
T Consensus 62 d~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~ 141 (549)
T PF07079_consen 62 DLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIET 141 (549)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhc
Confidence 44444444444445566777766654 45677888888877654443 111 22334557778899999
Q ss_pred CCHHHHHHh---------hCCCCCCHHHHHHHHHHHHHc-------C--------CHHHHHHHHHHHHHc------CCCC
Q 006012 177 EKLYEAFLL---------SQRQRLTPLTYNALISACARN-------D--------DLEKALNLMSKMRQD------GYHC 226 (664)
Q Consensus 177 ~~~~~A~~~---------~~~~~~~~~~~~~li~~~~~~-------g--------~~~~A~~~~~~m~~~------g~~p 226 (664)
|++.+++.+ .+....+..+||.++-.+.|+ + -++.++-...+|... .+.|
T Consensus 142 g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~p 221 (549)
T PF07079_consen 142 GRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIP 221 (549)
T ss_pred CCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCc
Confidence 999998876 222346778888754444332 1 123333333333322 1233
Q ss_pred ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHH
Q 006012 227 DFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQ-LLNDVIVGFAKAGDASKAMRFLGMAQGVGLS----PKTA 301 (664)
Q Consensus 227 ~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~----~~~~ 301 (664)
.......++..+.-...-......++++.....-+.|+-. +...|+..+.+ +.+++..+.+.+....+. .=..
T Consensus 222 eeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~ 299 (549)
T PF07079_consen 222 EEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELID 299 (549)
T ss_pred HHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333334443333222111111234444444444444432 22333333333 444444444433322111 1234
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006012 302 TYAAVITALSNSGRTIEAEAVFEELKE 328 (664)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 328 (664)
++..++...++.++...|.+.+.-+.-
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 566666666666666666666655543
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.07 E-value=0.98 Score=40.19 Aligned_cols=127 Identities=15% Similarity=0.228 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 006012 437 EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG---YFPCTTTY 513 (664)
Q Consensus 437 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~t~ 513 (664)
.|++..-..|..++.+.|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 577777777888888888888888888888765455677777778888888888888888888887653 2333 44
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006012 514 NIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIEC 567 (664)
Q Consensus 514 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 567 (664)
..+.+.+...|+..+|+.-|+..... -|+...-......+.+.|+.++|..-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 56678888889999999999888875 56666656667778888888877654
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.07 E-value=2 Score=43.64 Aligned_cols=171 Identities=9% Similarity=0.018 Sum_probs=87.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 445 VMIDTFGKYNCLHHAMAAFDRMLSEG---IEPDTITWNTLIDCHFK---CGRYDRAEELFEEMQERGYFPCTTTYNIMIN 518 (664)
Q Consensus 445 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 518 (664)
.++-+|....+++...++.+.+.... +.-....--...-++.+ .|+.++|++++..+....-.++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33444556666666666666665431 00011111122234444 6667777777766554444666666666665
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCC--
Q 006012 519 LLGE---------QERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGL-- 587 (664)
Q Consensus 519 ~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~-- 587 (664)
.|-. ....++|...+.+.-+. .||...--.++-.+...|...+...-++. -++.+-....++|.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~---i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRK---IGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHH---HHHHHHHHHHhhcccc
Confidence 5532 12366777777766553 34433222222233333432222111111 01111111222232
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 588 -KPSNLALNSLINAFGEDQRDAEAFAVLQYMKEN 620 (664)
Q Consensus 588 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 620 (664)
..+-..+.+++.++.-.|+.++|.+..++|...
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 233345578889999999999999999999974
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=1.3 Score=41.64 Aligned_cols=132 Identities=11% Similarity=0.039 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HH
Q 006012 302 TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYS-----LL 376 (664)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-----~l 376 (664)
..+.++..+.-.|.+.-..+++.+.++...+-+......|++.-.+.||.+.|...|++..+..-+.|..+.+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3456666666777777777778777776656677777777777778888888888887766543233333332 33
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 377 IDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS 434 (664)
Q Consensus 377 i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 434 (664)
...|.-++++.+|...+.++...+ +.+....|.-.-+..-.|+..+|++.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334555666667777776665543 233444444333444456666677666666654
No 206
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.03 E-value=0.9 Score=42.38 Aligned_cols=49 Identities=12% Similarity=0.052 Sum_probs=27.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 006012 481 LIDCHFKCGRYDRAEELFEEMQERG--YFPCTTTYNIMINLLGEQERWEDV 529 (664)
Q Consensus 481 li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a 529 (664)
+..-|.+.|.+..|..-++.+++.= ..-.......++.++.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 4456777777777777777777651 111123345566667777766643
No 207
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.02 E-value=0.066 Score=45.25 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=48.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhc
Q 006012 585 DGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE-NGLKPDVVTYTTLMKALIRV 639 (664)
Q Consensus 585 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~a~~~~ 639 (664)
..+.|+..+..+++.+|+..|++..|+++++...+ .+++.+..+|..|+.=....
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999987 68888999999999844443
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.46 Score=45.80 Aligned_cols=102 Identities=12% Similarity=0.037 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHH
Q 006012 297 SPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMG---YLKDAEFVVSEMERSGVLPDEHTY 373 (664)
Q Consensus 297 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~ 373 (664)
+-|...|-.|...|...|+...|...|.+..+.. .++...+..+..++.... +..++..+|+++.+.... |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 4577888888888888888888888888877642 225555555555544332 356777888888776433 66667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006012 374 SLLIDAYANAGRWESARIVLKEMEVSH 400 (664)
Q Consensus 374 ~~li~~~~~~g~~~~A~~l~~~m~~~~ 400 (664)
..|...+...|++.+|...++.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 777777778888888888888887653
No 209
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.97 E-value=2 Score=42.98 Aligned_cols=109 Identities=19% Similarity=0.296 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006012 337 AYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYR 416 (664)
Q Consensus 337 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~ 416 (664)
+.+..|.-+...|+...|.++-.+.. .||...|...+.+|+..++|++-.++-.. +-++.-|-..+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555666777788777777766653 36778888888888888888876665332 224467778888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 006012 417 DRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDR 465 (664)
Q Consensus 417 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 465 (664)
+.|...+|..+...+ + +..-+..|.++|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~------~----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI------P----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC------C----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888887776662 1 24456777888888887766443
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.80 E-value=0.18 Score=48.91 Aligned_cols=97 Identities=13% Similarity=-0.011 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHH
Q 006012 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK----TATYAAVITALSNSGRTIEAEAVFEELKESGLK--PRTKAYN 339 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p~~~~~~ 339 (664)
..|+..+..+.+.|++++|...|+.+.+.- |+ ...+..+...|...|++++|...|+.+.+.-.. .....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 345555555566678888888888777642 33 246667777777788888888888777753211 1233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 340 ALLKGYVKMGYLKDAEFVVSEMERS 364 (664)
Q Consensus 340 ~li~~~~~~g~~~~a~~~~~~m~~~ 364 (664)
.+...+...|+.++|..+++.+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666777777777777777665
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.66 E-value=0.075 Score=46.62 Aligned_cols=70 Identities=20% Similarity=0.312 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 006012 478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA-----QGLLPNVVTY 548 (664)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~ 548 (664)
...++..+...|++++|..+.+.+.... +-+...|..+|.+|...|+..+|.+.++++.+ .|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4445556666677777777777776665 55666677777777777777777766665542 3666665543
No 212
>PRK15331 chaperone protein SicA; Provisional
Probab=95.63 E-value=0.16 Score=44.44 Aligned_cols=82 Identities=13% Similarity=0.053 Sum_probs=50.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006012 486 FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAI 565 (664)
Q Consensus 486 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 565 (664)
-..|++++|..+|+-+...+ .-+..-|..|..++-..+++++|...+......+. -|+..+-....+|...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 45677777777777666554 23444455556666666777777777766655433 24444555667777777777777
Q ss_pred HHHh
Q 006012 566 ECLE 569 (664)
Q Consensus 566 ~~~~ 569 (664)
..|+
T Consensus 126 ~~f~ 129 (165)
T PRK15331 126 QCFE 129 (165)
T ss_pred HHHH
Confidence 6654
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.60 E-value=0.055 Score=41.42 Aligned_cols=69 Identities=23% Similarity=0.335 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 545 VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 545 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
..+++.+...|...|++++|+..++. |+++.+.+.. -.|+ ..++..+..+|...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~----al~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEK----ALDIEEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHH----HHHHHHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH----HHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35678888999999999999988763 3333222211 1123 45788999999999999999999998765
No 214
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.47 E-value=0.36 Score=45.73 Aligned_cols=107 Identities=13% Similarity=0.199 Sum_probs=62.0
Q ss_pred CCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCC
Q 006012 188 RQRLTPLTYNALISACARN-----DDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIE 262 (664)
Q Consensus 188 ~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~ 262 (664)
...+|-.+|-+++..+... +.++=.-..++.|.+.|+.-|..+|+.+|+.+-+.......+.+++|-...
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP----- 136 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYP----- 136 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCc-----
Confidence 3355667777777766543 445555556677777777777777777776665544433222222222211
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006012 263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR 315 (664)
Q Consensus 263 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 315 (664)
.+-+-++.++++|...|+.||..+-..+++++.+.+-
T Consensus 137 ----------------~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 137 ----------------QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ----------------hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1223455666666666666666666666666665554
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.47 E-value=0.32 Score=47.22 Aligned_cols=25 Identities=4% Similarity=-0.094 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 408 YSRILAGYRDRGEWQRTFQVLKEMK 432 (664)
Q Consensus 408 ~~~ll~~~~~~g~~~~a~~~~~~m~ 432 (664)
+..+...|...|++++|...|..+.
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.47 E-value=0.069 Score=40.89 Aligned_cols=59 Identities=24% Similarity=0.300 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 592 LALNSLINAFGEDQRDAEAFAVLQYMKEN--GLK---PD-VVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
.+|+.+...|...|++++|+.++++..+. .+. |+ ..++..+..++.+.|++++|++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 47889999999999999999999999852 122 22 4678899999999999999999998
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.43 E-value=0.1 Score=45.78 Aligned_cols=124 Identities=25% Similarity=0.375 Sum_probs=73.3
Q ss_pred HHHHHHHHH---HHHHcCCHHHHHHHHHHHHHc--C-CCCChhh--HHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCC
Q 006012 193 PLTYNALIS---ACARNDDLEKALNLMSKMRQD--G-YHCDFIN--YSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELD 264 (664)
Q Consensus 193 ~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~--g-~~p~~~~--~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d 264 (664)
...|..++. .....++.+.+++.+.++... | +-++... |..-.. .-+....
T Consensus 3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r--------------~~l~~~~------- 61 (146)
T PF03704_consen 3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPER--------------ERLRELY------- 61 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHH--------------HHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHH--------------HHHHHHH-------
Confidence 334445533 345678889999988888764 2 2223221 211111 1111111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHH
Q 006012 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKE-----SGLKPRTKAY 338 (664)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~p~~~~~ 338 (664)
......++..+...|++++|.++.+.+.... +-+...|..+|.++...|+..+|.+.|+.+.+ .|+.|+..+-
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 1244567777888899999999988888764 45778888889999999999999888887743 4777766543
No 218
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=5.1 Score=43.56 Aligned_cols=320 Identities=15% Similarity=0.130 Sum_probs=173.0
Q ss_pred hCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHC
Q 006012 293 GVGLSPKTATYA-----AVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY---LKDAEFVVSEMERS 364 (664)
Q Consensus 293 ~~g~~~~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~ 364 (664)
..|++.+..-|. .+|+-+...+.+..|.++-..+...-..- ...|.....-+.+..+ -+.+..+-+++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 345555544444 34666677777788887777665432221 4555556665655532 22222222333221
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----
Q 006012 365 GVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHA----KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSG----- 435 (664)
Q Consensus 365 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g----- 435 (664)
. .....|..+..-.-..|+.+-|..+++.=...+. -.+..-+...+.-+.+.|+.+-...++-++.+.-
T Consensus 504 -~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 504 -L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred -C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 2 3445666677666778888888777664221110 0112233444555666677766666666554421
Q ss_pred ------CCCCHHHHHHHHH--------HHhccCCHHHHHHHHHH-H-H----HCCCCCCHHHHHHHHHHHHHcCC-----
Q 006012 436 ------VEPDTHFYNVMID--------TFGKYNCLHHAMAAFDR-M-L----SEGIEPDTITWNTLIDCHFKCGR----- 490 (664)
Q Consensus 436 ------~~~~~~~~~~li~--------~~~~~g~~~~A~~~~~~-m-~----~~g~~~~~~~~~~li~~~~~~g~----- 490 (664)
.+.....|.-++. .+...++-.++...|.. - . ..|..|+ ......++.+...
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEA 658 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHH
Confidence 0111112221111 01111121222221111 0 0 0122222 2223334443332
Q ss_pred -----HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 006012 491 -----YDRAEELFEEMQER-GYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDA 564 (664)
Q Consensus 491 -----~~~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 564 (664)
..+-+++.+.+..+ |..-...+.+--+.-+...|+..+|.++-.+.+ .||...|-.-+.+++..+++++-
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHH
Confidence 12222333333322 323334455666777788899999988877664 47889999999999999998875
Q ss_pred HHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 006012 565 IECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHK 644 (664)
Q Consensus 565 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~ 644 (664)
.++ .+. +.++.-|.-.+.+|.+.|+.+||.+++-+.-. . .-.+.+|.+.|++.+
T Consensus 735 ekf---------------Aks--kksPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~e 788 (829)
T KOG2280|consen 735 EKF---------------AKS--KKSPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKE 788 (829)
T ss_pred HHH---------------Hhc--cCCCCCchhHHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHH
Confidence 443 111 22356688889999999999999998775522 1 157889999999998
Q ss_pred HHHH
Q 006012 645 VFSS 648 (664)
Q Consensus 645 A~~~ 648 (664)
|.+.
T Consensus 789 Aad~ 792 (829)
T KOG2280|consen 789 AADL 792 (829)
T ss_pred HHHH
Confidence 8764
No 219
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.33 E-value=0.12 Score=38.81 Aligned_cols=55 Identities=16% Similarity=0.068 Sum_probs=29.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 484 CHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 484 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 539 (664)
.|.+.+++++|.++++++...+ +.+...|......+.+.|++++|.+.++...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455555555555555555544 334444555555555555555555555555543
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.22 E-value=3.8 Score=41.01 Aligned_cols=278 Identities=14% Similarity=0.105 Sum_probs=157.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012 278 AGDASKAMRFLGMAQGVGLSPKTATYAAVITA--LSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAE 355 (664)
Q Consensus 278 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 355 (664)
.|+-..|.++-.+..+. +.-|......++.+ -.-.|+++.|.+-|+.|... .+...-....|.-.--+.|+.+.|.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHH
Confidence 36666666655443321 23344444444433 33468888888888888752 0101112223333334667777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCHHH--HHHHHHHHH---hcCCHHHHHHHHH
Q 006012 356 FVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSH-AKPNSFI--YSRILAGYR---DRGEWQRTFQVLK 429 (664)
Q Consensus 356 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~~~~~~--~~~ll~~~~---~~g~~~~a~~~~~ 429 (664)
..-+..-..-.. -...+.+.+...|..|+|+.|+++++.-.... +.++..- -..|+.+-. -..+...|...-.
T Consensus 175 ~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 777776654322 34667778888888888888888888765533 2333321 112222211 1124445555444
Q ss_pred HHHHCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC-
Q 006012 430 EMKSSGVEPDTHFY-NVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER-GY- 506 (664)
Q Consensus 430 ~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~- 506 (664)
+..+. .||.+-- ..-..++.+.|++.++-.+++.+-+....|+ .+ ..|.+...-|.+++-+++..+. .+
T Consensus 254 ~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia----~lY~~ar~gdta~dRlkRa~~L~slk 325 (531)
T COG3898 254 EANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA----LLYVRARSGDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH----HHHHHhcCCCcHHHHHHHHHHHHhcC
Confidence 44433 4543322 2334577888999999999999888754443 32 2333333334444444444321 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHH
Q 006012 507 FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQ-SGRFDDAIECL 568 (664)
Q Consensus 507 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~ 568 (664)
+.+......+..+....|++..|..--+...+ ..|....|..|.+.-.. .|+-.++...+
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHH
Confidence 33566677777888888888887776666655 46778888877776544 47777776654
No 221
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.22 E-value=0.092 Score=39.51 Aligned_cols=56 Identities=20% Similarity=0.131 Sum_probs=37.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006012 273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES 329 (664)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 329 (664)
..|.+.+++++|+++++.+...+ +.+...|.....++.+.|++.+|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666677777777777776654 335566666667777777777777777776654
No 222
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.14 E-value=0.37 Score=40.75 Aligned_cols=56 Identities=7% Similarity=0.051 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCC
Q 006012 505 GYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ-GLLPNVVTYTTLVDIYGQSGR 560 (664)
Q Consensus 505 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~ 560 (664)
...|+..+..+++.+|+..+++..|.++++...+. +++.+..+|..|+.-....-+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 45688888888888888888888888888888765 777778888888876554443
No 223
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.09 E-value=4.6 Score=41.22 Aligned_cols=89 Identities=15% Similarity=0.164 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 006012 148 AVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQR---QRLTPLTYNALISACARNDDLEKALNLMSKMRQDG 223 (664)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 223 (664)
++-+++.+ + |.+...|-.||.-|...|+.++-++. .+. .+-=+.+|..-+++=...++++....+|.+.....
T Consensus 30 rLRerIkd-N--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKD-N--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhc-C--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 55555543 3 67778888999999999988887776 222 22234588888888888888888888888887764
Q ss_pred CCCChhhHHHHHHHHHhc
Q 006012 224 YHCDFINYSLVIQSLTRT 241 (664)
Q Consensus 224 ~~p~~~~~~~ll~~~~~~ 241 (664)
.+...|..-+.-..+.
T Consensus 107 --l~ldLW~lYl~YIRr~ 122 (660)
T COG5107 107 --LNLDLWMLYLEYIRRV 122 (660)
T ss_pred --ccHhHHHHHHHHHHhh
Confidence 3455566555544443
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.81 E-value=5.3 Score=40.59 Aligned_cols=172 Identities=15% Similarity=0.099 Sum_probs=84.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 006012 340 ALLKGYVKMGYLKDAEFVVSEMERSG---VLPDEHTYSLLIDAYAN---AGRWESARIVLKEMEVSHAKPNSFIYSRILA 413 (664)
Q Consensus 340 ~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~ 413 (664)
.++-.|....+++...++++.+.... +.-....-....-++.+ .|+.++|++++..+......++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445666677777777777776541 11112222233344445 6677777777766544444566666655555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HH
Q 006012 414 GYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR-YD 492 (664)
Q Consensus 414 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~ 492 (664)
.|-+. | .+.+ .-|.. ..++|...|.+.-+. .++..+--.+...+...|. .+
T Consensus 226 IyKD~---------~---~~s~-~~d~~-------------~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 226 IYKDL---------F---LESN-FTDRE-------------SLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFE 277 (374)
T ss_pred HHHHH---------H---HHcC-ccchH-------------HHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCccc
Confidence 44221 0 0000 01111 144555555544432 1332221111111222222 11
Q ss_pred ---HHHHHH---H-HHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 493 ---RAEELF---E-EMQERG---YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 493 ---~A~~~~---~-~m~~~~---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 539 (664)
+..++- . .+.++| -..+.-.+..++.++.-.|+.++|.+..++|.+.
T Consensus 278 ~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred chHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 112221 1 111222 2345566677888888889999999999888875
No 225
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.76 E-value=2.4 Score=36.70 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=16.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006012 307 ITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK 347 (664)
Q Consensus 307 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 347 (664)
+..+.+.+........++.+...+. .+...+|.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 3333333444444444444443332 233344444444443
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=2 Score=43.21 Aligned_cols=137 Identities=14% Similarity=0.047 Sum_probs=91.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 006012 201 SACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGD 280 (664)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~ 280 (664)
+.|.+.|++..|...|++.... +-.....+... .+.... .-..+++.|..+|.+.++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~---------------l~~~~~~~~ee-~~~~~~-------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSF---------------LEYRRSFDEEE-QKKAEA-------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHH---------------hhccccCCHHH-HHHHHH-------HHHHHhhHHHHHHHhhhh
Confidence 4678889999999998887652 00001111111 111111 123466778888999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH-HHHHHHH
Q 006012 281 ASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP-RTKAYNALLKGYVKMGYL-KDAEFVV 358 (664)
Q Consensus 281 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~-~~a~~~~ 358 (664)
+.+|++..+..+..+ ++|+....--..++...|+++.|+..|+++.+. .| |...-+.|+.+--+.... +...++|
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876 678888888889999999999999999999875 34 444445555544444433 3345667
Q ss_pred HHHHH
Q 006012 359 SEMER 363 (664)
Q Consensus 359 ~~m~~ 363 (664)
..|..
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 66654
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.72 E-value=0.68 Score=47.59 Aligned_cols=66 Identities=18% Similarity=0.051 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT----TTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 472 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 539 (664)
+.+...|+.+..+|.+.|++++|+..|++.++.+ |+. .+|..+..+|...|+.++|.+.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4467788999999999999999999999988875 443 35888999999999999999999999885
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.67 E-value=0.51 Score=48.46 Aligned_cols=66 Identities=11% Similarity=0.082 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006012 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKT----ATYAAVITALSNSGRTIEAEAVFEELKES 329 (664)
Q Consensus 262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 329 (664)
+.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|+.++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556788899999999999999999999998875 4553 45899999999999999999999998874
No 229
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.48 E-value=1.1 Score=47.06 Aligned_cols=157 Identities=11% Similarity=0.063 Sum_probs=74.7
Q ss_pred HHHHhcCChHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006012 308 TALSNSGRTIEAEAVFEE-LKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRW 386 (664)
Q Consensus 308 ~~~~~~g~~~~A~~l~~~-m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 386 (664)
+...-.|+++++.++.+. -.-..+ ...-.+.++..+-+.|..+.|+++.+.-. .-.+...+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 344456666666666541 111112 23446666666666666666666543321 123445566666
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 006012 387 ESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRM 466 (664)
Q Consensus 387 ~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 466 (664)
+.|.++.++. .+...|..|.....+.|+++-|.+.|.+... +..|+-.|.-.|+.+...++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 6665554332 3455666666666666666666666655321 344444555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012 467 LSEGIEPDTITWNTLIDCHFKCGRYDRAEELFE 499 (664)
Q Consensus 467 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 499 (664)
...|- +|....++...|+.++..+++.
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 54431 3444444445566555555544
No 230
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.43 E-value=2.5 Score=36.54 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=49.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012 445 VMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE 524 (664)
Q Consensus 445 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 524 (664)
.++..+.+.+....+...++.+.+.+ ..+...++.++..|++.+ ..+..+.++. . .+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 45555555666777777777776665 356667777777777653 3344444442 1 12233344666666667
Q ss_pred CHHHHHHHHHHH
Q 006012 525 RWEDVKRLLGNM 536 (664)
Q Consensus 525 ~~~~a~~~~~~m 536 (664)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666666554
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=94.35 E-value=0.54 Score=41.24 Aligned_cols=88 Identities=8% Similarity=-0.087 Sum_probs=56.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006012 274 GFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKD 353 (664)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 353 (664)
-+...|++++|..+|.-+.-.+ .-+..-|..|..++-..+++++|...|......+.. |...+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 3456677888887777766543 234555666666666777777777777765543322 33344456677777777777
Q ss_pred HHHHHHHHHH
Q 006012 354 AEFVVSEMER 363 (664)
Q Consensus 354 a~~~~~~m~~ 363 (664)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777777665
No 232
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.35 E-value=13 Score=42.96 Aligned_cols=81 Identities=12% Similarity=0.215 Sum_probs=47.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012 446 MIDTFGKYNCLHHAMAAFDRMLSEGIEPDTI--TWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQ 523 (664)
Q Consensus 446 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 523 (664)
.+.+|-.+|+|.+|..+..++.. ..+.. +-..|+.-+...+++-+|-++..+.... ....+..+++.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhH
Confidence 35566667777777777766642 11222 2255666677777777777777666543 12234445666
Q ss_pred CCHHHHHHHHHHHH
Q 006012 524 ERWEDVKRLLGNMR 537 (664)
Q Consensus 524 g~~~~a~~~~~~m~ 537 (664)
..|++|.++.....
T Consensus 1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHHHhcc
Confidence 66677666655443
No 233
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.33 E-value=11 Score=41.96 Aligned_cols=60 Identities=10% Similarity=0.157 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcC
Q 006012 270 DVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR-------TIEAEAVFEELKESG 330 (664)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~~ 330 (664)
.+|-.|.++|++++|.++...... ........+...+..+....+ -+....-|++..+..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 355667889999999998844433 234455666777777766532 234555566555543
No 234
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.31 E-value=2.7 Score=35.17 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=22.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012 482 IDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG 540 (664)
Q Consensus 482 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 540 (664)
++.+.+.|+-|+-.++++++.+.+ .+++.....+..+|.+.|+..++.+++.++.+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333444444444444444443322 3334444444444444444444444444444444
No 235
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.27 E-value=3.7 Score=36.47 Aligned_cols=136 Identities=13% Similarity=0.242 Sum_probs=86.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHH
Q 006012 495 EELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQ 574 (664)
Q Consensus 495 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 574 (664)
.++++.+.+.+++|+...+..+++.+.+.|++....+ ++..++-+|.......+-.+.. ....+.+ -
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~--~~~~~~Q-------l 80 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGN--QYPPAYQ-------L 80 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHc--cChHHHH-------H
Confidence 4566667778888888889999999998888765544 4445555665555444433322 2233322 2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 006012 575 AVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFFNI 654 (664)
Q Consensus 575 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~~~~ 654 (664)
|++.++++.. .+..++..+...|++-+|+++.+..... +...-..++.+..+.+|..-=..+|++|..
T Consensus 81 ~lDMLkRL~~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 81 GLDMLKRLGT--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHhhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555442 3666778888899999999988775321 112225677778788877777777776655
Q ss_pred h
Q 006012 655 Y 655 (664)
Q Consensus 655 ~ 655 (664)
.
T Consensus 149 ~ 149 (167)
T PF07035_consen 149 R 149 (167)
T ss_pred h
Confidence 3
No 236
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.11 E-value=4.2 Score=40.24 Aligned_cols=167 Identities=11% Similarity=0.072 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHH
Q 006012 477 TWNTLIDCHFKCGRYDRAEELFEEMQER-GYFP---CTTTYNIMINLLGEQERWEDVKRLLGNMRAQG-----LLPNVVT 547 (664)
Q Consensus 477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~ 547 (664)
.|-.+..++-+..++.+++.+-+.-... |..| ......++..+....+.++++++.|+...+.- .-....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444455555555555555554443322 2222 12334446667777788888888888776531 1123467
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 006012 548 YTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-----SNLALNSLINAFGEDQRDAEAFAVLQYMKE--- 619 (664)
Q Consensus 548 ~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 619 (664)
+..|...|....++++|.-+.. +|.++- ...++.- .......|.-++...|+..+|.+.-++..+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~----kA~~lv---~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal 237 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPC----KAAELV---NSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL 237 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhH----hHHHHH---HhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 8889999999999998876543 222222 2222221 112334556778888999999888887764
Q ss_pred -CCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 620 -NGLKPD-VVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 620 -~g~~p~-~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
.|-.+- ......+.+.|...|+.+.|+.-||
T Consensus 238 ~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 238 QHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 343332 2445578889999999999999998
No 237
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.08 E-value=3.1 Score=34.88 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006012 441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY 506 (664)
Q Consensus 441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 506 (664)
......++.+.+.|.-++..+++..+.+.+ .++....-.+..+|.+.|+..++-+++++.-++|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344455566666677777777776666433 45666666666777777777777777777766663
No 238
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.05 E-value=0.86 Score=43.28 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006012 318 EAEAVFEELKESGLKPRTKAYNALLKGYVKMGY 350 (664)
Q Consensus 318 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 350 (664)
-+++++++|...|+.||..+-..|+.++.+.+.
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 345555666666666665555555555555543
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.86 E-value=1.9 Score=45.41 Aligned_cols=159 Identities=14% Similarity=0.147 Sum_probs=107.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006012 272 IVGFAKAGDASKAMRFLGMAQ-GVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY 350 (664)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 350 (664)
.....-.|+++++.+..+.-. -..+ ...-.+.++..+-+.|..+.|+++-.+-. .-.....+.|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 344556799999888775211 1111 25568889999999999999998765432 23455678899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006012 351 LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKE 430 (664)
Q Consensus 351 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 430 (664)
++.|.++.++. .+...|..|.+...+.|+++-|.+.|++... |..|+-.|.-.|+.+...++.+.
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 99998876554 3778999999999999999999999988753 56777788889998888888887
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 006012 431 MKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDR 465 (664)
Q Consensus 431 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 465 (664)
....|- ++....++...|++++..+++.+
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 777652 55556666677888887777654
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=1.2 Score=44.73 Aligned_cols=96 Identities=16% Similarity=0.159 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLL 520 (664)
Q Consensus 441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 520 (664)
.+++.+.-++.+.+++..|++.-+..+..+ ++|....-.-..+|...|+++.|+..|+.+++.. +-|...-+.++..-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344555556666666666666666666554 3455555555566666666666766666666653 22333333333332
Q ss_pred HhcCCH-HHHHHHHHHHHH
Q 006012 521 GEQERW-EDVKRLLGNMRA 538 (664)
Q Consensus 521 ~~~g~~-~~a~~~~~~m~~ 538 (664)
-+.... +...++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 233222 223555555543
No 241
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.62 E-value=8.2 Score=38.22 Aligned_cols=127 Identities=13% Similarity=0.181 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCC---
Q 006012 283 KAMRFLGMAQGVGLSPKTATYAAVITALSN--SG----RTIEAEAVFEELKESGL---KPRTKAYNALLKGYVKMGY--- 350 (664)
Q Consensus 283 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~l~~~m~~~~~---~p~~~~~~~li~~~~~~g~--- 350 (664)
+.+++++.|.+.|+..+..+|-+..-.... .. ....|..+|+.|++... .++...+..|+.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344566677777776666655553333222 11 24456777777766432 2234444444443 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCCHHHHHHH
Q 006012 351 -LKDAEFVVSEMERSGVLPDE--HTYSLLIDAYANAGR--WESARIVLKEMEVSHAKPNSFIYSRI 411 (664)
Q Consensus 351 -~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~--~~~A~~l~~~m~~~~~~~~~~~~~~l 411 (664)
.+.++.+++.+.+.|+..+. .....++........ ...+.++++.+.+.+++.....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34555666666665554332 122222222111111 33555566666666655555554433
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.55 E-value=3.6 Score=43.87 Aligned_cols=118 Identities=16% Similarity=0.046 Sum_probs=69.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHH
Q 006012 278 AGDASKAMRFLGMAQGVGLSPKTATYAA-VITALSNSGRTIEAEAVFEELKESG---LKPRTKAYNALLKGYVKMGYLKD 353 (664)
Q Consensus 278 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~ 353 (664)
....+.|.++++.+.+. -|+..-|.. -.+.+...|++++|.+.|+...... .+.....+--+.-++.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 35566777777777654 355444433 3455666777777777777654311 11133445556666777788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCH-------HHHHHHHHHHHh
Q 006012 354 AEFVVSEMERSGVLPDEHTYSLLI-DAYANAGRW-------ESARIVLKEMEV 398 (664)
Q Consensus 354 a~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~-------~~A~~l~~~m~~ 398 (664)
|.+.|..+.+..- ....+|.-+. .++...|+. ++|.++|.+...
T Consensus 324 A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8888888876532 2333333332 234455666 778888877643
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.32 E-value=7.6 Score=41.49 Aligned_cols=162 Identities=15% Similarity=0.135 Sum_probs=97.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012 480 TLIDCHFKCGRYDRAEELFEEMQERG-YFPCT-----TTYNIMINLLGE----QERWEDVKRLLGNMRAQGLLPNVVTYT 549 (664)
Q Consensus 480 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~-----~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~ 549 (664)
.++....-.|+-+.+++.+.+..+.+ +.-.. -.|..++..++. ....+.|.+++..+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 34444455666666666666655432 11111 123333333332 45678899999988875 46665554
Q ss_pred HH-HHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012 550 TL-VDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVT 628 (664)
Q Consensus 550 ~l-i~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 628 (664)
-. .+.+...|++++|++.++...+ ...-++++ ....+--+...+.-.+++++|.+.|.++.+.. .....+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~-~q~~~~Ql-------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~ 341 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIE-SQSEWKQL-------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAF 341 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhcc-chhhHHhH-------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHH
Confidence 43 4667788899999888764331 11112221 23455667777888999999999999998853 334444
Q ss_pred HHHHH-HHHHhcCCH-------hHHHHHHHHH
Q 006012 629 YTTLM-KALIRVDKF-------HKVFSSYLFF 652 (664)
Q Consensus 629 ~~~l~-~a~~~~g~~-------~~A~~~~~~~ 652 (664)
|.-+. .++...|+. ++|.++++..
T Consensus 342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 342 YAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 44333 345567777 7777777633
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.05 E-value=3.6 Score=34.38 Aligned_cols=92 Identities=22% Similarity=0.226 Sum_probs=67.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHH---HHHHHHHHHHhc
Q 006012 273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES-GLKPRTK---AYNALLKGYVKM 348 (664)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~~~---~~~~li~~~~~~ 348 (664)
.+.+..|+++.|++.|.+....- +.....||.-..++.-.|+.++|++-+++..+. |.+ ... .|..-...|-..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 35677899999999998887642 457788999999999999999999988887763 332 222 233333456677
Q ss_pred CCHHHHHHHHHHHHHCCC
Q 006012 349 GYLKDAEFVVSEMERSGV 366 (664)
Q Consensus 349 g~~~~a~~~~~~m~~~g~ 366 (664)
|+.+.|..-|+..-+.|.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 888888888887777663
No 245
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.94 E-value=8.2 Score=36.22 Aligned_cols=87 Identities=18% Similarity=0.173 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006012 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGY 345 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 345 (664)
..|..-..+|-...++++|...+.+..+. .+.+...|. ..+-++.|.-+.++|.+.. --...|+-....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHH
Confidence 34555566777778888888776665531 111111111 1233444555555554421 1234566667777
Q ss_pred HhcCCHHHHHHHHHHHH
Q 006012 346 VKMGYLKDAEFVVSEME 362 (664)
Q Consensus 346 ~~~g~~~~a~~~~~~m~ 362 (664)
..+|..+.|-..+++.-
T Consensus 102 ~E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAA 118 (308)
T ss_pred HHhCCcchHHHHHHHHH
Confidence 77887777766666654
No 246
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.84 E-value=5.6 Score=39.38 Aligned_cols=24 Identities=4% Similarity=0.329 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH
Q 006012 456 LHHAMAAFDRMLSEGIEPDTITWN 479 (664)
Q Consensus 456 ~~~A~~~~~~m~~~g~~~~~~~~~ 479 (664)
+++...+++.|.+.|+..+..+|-
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~l 101 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYL 101 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHH
Confidence 334445555555555555544443
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.55 E-value=12 Score=36.98 Aligned_cols=162 Identities=10% Similarity=0.093 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012 476 ITWNTLIDCHFKCGRYD---RAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLV 552 (664)
Q Consensus 476 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 552 (664)
.+...++.+|...+..+ +|..+++.+.... +-....+..-++.+.+.++.+++.+++.+|+..- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 45667778888777654 5556666664432 2235556566777777888999999999998862 21223344444
Q ss_pred HHH---HhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHHhcC------CHHHHHHHHHHHH
Q 006012 553 DIY---GQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLAL-----NSLINAFGEDQ------RDAEAFAVLQYMK 618 (664)
Q Consensus 553 ~~~---~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-----~~li~~~~~~g------~~~~A~~~~~~m~ 618 (664)
..+ ..... ..|... +..+....+.|....| ...+....+.+ +.+...++++...
T Consensus 163 ~~i~~l~~~~~-~~a~~~-----------ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~ 230 (278)
T PF08631_consen 163 HHIKQLAEKSP-ELAAFC-----------LDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVE 230 (278)
T ss_pred HHHHHHHhhCc-HHHHHH-----------HHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHH
Confidence 443 33222 223332 3333333233333211 11112222221 2455555555443
Q ss_pred H-CCCCCCHHHHH---H----HHHHHHhcCCHhHHHHHHHH
Q 006012 619 E-NGLKPDVVTYT---T----LMKALIRVDKFHKVFSSYLF 651 (664)
Q Consensus 619 ~-~g~~p~~~~~~---~----l~~a~~~~g~~~~A~~~~~~ 651 (664)
+ .+.+.+..+-. + -+..+.+.+++++|.+.|++
T Consensus 231 ~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 231 HSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 3 22333433322 2 23456678999999999984
No 248
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.50 E-value=15 Score=40.72 Aligned_cols=176 Identities=16% Similarity=0.195 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 006012 338 YNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLL----IDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILA 413 (664)
Q Consensus 338 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~ 413 (664)
...-+..+++...++.|..+-+.- +. +..+...+ .+.+-+.|++++|...|-+-... +.|. .++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---HL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---CC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 344566667777777776665432 22 33333333 33344567777777766655432 1222 2344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012 414 GYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR 493 (664)
Q Consensus 414 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 493 (664)
-|....+...-..+++.+.+.|. .+...-+.|+.+|.+.++.++..+..+... .|.. ..-....+..+-+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 55555666666666777777664 344455667777777777766665554433 2211 0112334455555566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012 494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNM 536 (664)
Q Consensus 494 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 536 (664)
|..+-.....+ ...... .+-..+++++|.+.+..+
T Consensus 482 a~~LA~k~~~h-----e~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKKH-----EWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhccC-----HHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 66555444332 222222 234566777777776654
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=92.36 E-value=8.1 Score=40.10 Aligned_cols=109 Identities=18% Similarity=0.219 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012 456 LHHAMAAFDRMLSE-GIEPD-TITWNTLIDCHFKC---------GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE 524 (664)
Q Consensus 456 ~~~A~~~~~~m~~~-g~~~~-~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 524 (664)
.+.|..+|.+.... ...|+ ...|..+..++... ....+|.++.++..+.+ +-|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 55666677766621 22333 33444443333221 12334555555555555 455555555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 006012 525 RWEDVKRLLGNMRAQGLLPN-VVTYTTLVDIYGQSGRFDDAIEC 567 (664)
Q Consensus 525 ~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 567 (664)
+++.|...|++....+ || ..+|........-.|+.++|.+.
T Consensus 353 ~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 353 QAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred chhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5666666666665532 32 34444444444555555555544
No 250
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.35 E-value=1.6 Score=42.28 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 006012 476 ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA-----QGLLPNVVTYTT 550 (664)
Q Consensus 476 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 550 (664)
.++..++..+..+|+++.+...++++.... +-+...|..++.+|.+.|+...|+..++.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345666667777777777777777777765 55667777777777777777777777766654 377777777666
Q ss_pred HHHH
Q 006012 551 LVDI 554 (664)
Q Consensus 551 li~~ 554 (664)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6655
No 251
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.08 E-value=28 Score=40.37 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=54.3
Q ss_pred CCCHHHHHHHH----HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012 437 EPDTHFYNVMI----DTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTT 512 (664)
Q Consensus 437 ~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 512 (664)
.|+...+..+. +.+.....+++|--.|+..-+ ..--+.+|..+|++.+|+.+..++....- --..+
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~d-e~~~~ 1001 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKD-ELVIL 1001 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHH-HHHHH
Confidence 35555544444 344455666777666655432 12345677778888888888776643210 00112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 513 YNIMINLLGEQERWEDVKRLLGNMRA 538 (664)
Q Consensus 513 ~~~ll~~~~~~g~~~~a~~~~~~m~~ 538 (664)
-..|..-+...++.-+|-++..+...
T Consensus 1002 a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHhc
Confidence 24566777788888888877776654
No 252
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.03 E-value=23 Score=39.33 Aligned_cols=176 Identities=15% Similarity=0.118 Sum_probs=104.3
Q ss_pred HHHHHHHcccCCHHHHHHhhCCCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 006012 167 SILIHALGRSEKLYEAFLLSQRQRLTPLTYNALI----SACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTN 242 (664)
Q Consensus 167 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 242 (664)
..-+.++.+-..+.-|+.+......+......+. +.+.+.|++++|...|-+-... +.|. .+++-+....
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 4457777888888899988555555554444444 4456789999999998776543 1222 2232222111
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006012 243 KIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAV 322 (664)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 322 (664)
+. ...-..++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.++|..+
T Consensus 412 ~I--knLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 412 RI--KNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HH--HHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 11 011234555666664 344455678999999999988777766543 2211 11234566777777777777666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 323 FEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEME 362 (664)
Q Consensus 323 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 362 (664)
-..... .......+ +-..+++++|.+.++.+.
T Consensus 486 A~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 486 ATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 554432 23333333 345678888888887764
No 253
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.89 E-value=14 Score=36.41 Aligned_cols=171 Identities=13% Similarity=0.111 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhccCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012 441 HFYNVMIDTFGKYNCLH---HAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMI 517 (664)
Q Consensus 441 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 517 (664)
.++..++.+|...+..+ +|..+.+.+.+.. .-....+-.-+..+.+.++.+++.+.+.+|+..- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 44556666676666544 4455555554432 1223444444555666778888888888887763 11233444444
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH---HHHhcCChHHH--HHHHhhhHHHHHHHHHHHHHCCC
Q 006012 518 NLL---GEQERWEDVKRLLGNMRAQGLLPNVV--TYTTLVD---IYGQSGRFDDA--IECLEGLSDQAVNAFRVMRTDGL 587 (664)
Q Consensus 518 ~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~---~~~~~g~~~~A--~~~~~~~~~~a~~~~~~m~~~g~ 587 (664)
..+ ... ....+...+..++...+.|... .-..++. .....++.... ++.+++..+ ...+.....+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~----~v~~~~~~~l 237 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLS----IVEHSLGKQL 237 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHH----HHHHHhcCCC
Confidence 444 332 2345666666665554554443 1111111 12222222222 222221111 1122222222
Q ss_pred CCCHH-HHHHH----HHHHHhcCCHHHHHHHHHHHH
Q 006012 588 KPSNL-ALNSL----INAFGEDQRDAEAFAVLQYMK 618 (664)
Q Consensus 588 ~p~~~-~~~~l----i~~~~~~g~~~~A~~~~~~m~ 618 (664)
.+... ...++ +..+.+.+++++|.++++-..
T Consensus 238 s~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 238 SAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22221 12222 355677899999999998654
No 254
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.77 E-value=12 Score=35.53 Aligned_cols=57 Identities=9% Similarity=0.022 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006012 596 SLINAFGEDQRDAEAFAVLQYMKENGLKPD---VVTYTTLMKALIRVDKFHKVFSSYLFFN 653 (664)
Q Consensus 596 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~a~~~~g~~~~A~~~~~~~~ 653 (664)
.+.+-|.+.|.+-.|..-+++|++. .+-. ...+..+..+|.+.|-.++|.+.-+.+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3567788999999999999999985 3332 3456678889999999999988777553
No 255
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.77 E-value=11 Score=34.96 Aligned_cols=202 Identities=14% Similarity=0.112 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH-
Q 006012 336 KAYNALLKGYVKMGYLKDAEFVVSEMERS-GVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILA- 413 (664)
Q Consensus 336 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~- 413 (664)
..+......+...+++..+...+...... ........+......+...++...+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444555555555555555555554431 112233444444445555555555555555554432222 111111112
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006012 414 GYRDRGEWQRTFQVLKEMKSSGV--EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRY 491 (664)
Q Consensus 414 ~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 491 (664)
.+...|+++.+...+.+...... ......+......+...++.+.+...+....+.........+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45555666666666665533211 0122223333333445556666666666665542111244555555566666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 492 DRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 492 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 539 (664)
+.|...+........ .....+..+...+...+..+++...+.+....
T Consensus 219 ~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALELDP-DNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhhCc-ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666655431 11233333333333455566666666665553
No 256
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.43 E-value=3.5 Score=39.39 Aligned_cols=96 Identities=17% Similarity=0.123 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC-CHHHHHHH
Q 006012 267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSP---KTATYAAVITALSNSGRTIEAEAVFEELKESGL-KP-RTKAYNAL 341 (664)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p-~~~~~~~l 341 (664)
.|+.-+.. .+.|++..|.+.|...++.. +- ....+-.|...+...|++++|..+|..+.+.-. .| -...+--|
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 56655554 46678999999998888754 22 245677788899999999999999988876422 12 23566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 006012 342 LKGYVKMGYLKDAEFVVSEMERS 364 (664)
Q Consensus 342 i~~~~~~g~~~~a~~~~~~m~~~ 364 (664)
..+..+.|+.++|..+|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 77888888888888888888876
No 257
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.41 E-value=0.64 Score=30.80 Aligned_cols=41 Identities=20% Similarity=0.082 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012 592 LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLM 633 (664)
Q Consensus 592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 633 (664)
.+|..+..+|...|++++|+++++++++. .+-|...+..|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~-~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL-DPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCHHHHHHhh
Confidence 36778899999999999999999999994 233556666554
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=15 Score=35.70 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=73.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006012 274 GFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKD 353 (664)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 353 (664)
.....|++.+|..+|+...... +-+...-..+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3456788888888888777653 334566667778888888888888888877653222122222223344444444444
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006012 354 AEFVVSEMERSGVLP-DEHTYSLLIDAYANAGRWESARIVLKEMEVS 399 (664)
Q Consensus 354 a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 399 (664)
...+-++.-.. | |...-..+...|...|+.+.|.+.+-.+...
T Consensus 222 ~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444432 3 5556666777777777777777766655443
No 259
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.28 E-value=17 Score=36.24 Aligned_cols=162 Identities=16% Similarity=0.140 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-----CCCHHHH
Q 006012 408 YSRILAGYRDRGEWQRTFQVLKEMKSS-GVEP---DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI-----EPDTITW 478 (664)
Q Consensus 408 ~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~~~~~~~ 478 (664)
|..+.+++.+..++.+++.+-+.-... |..| .-....++..++...+.++++++.|+...+... ......+
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 344444555555555555544443221 2111 112233355566666677777777776654211 1123456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-C
Q 006012 479 NTLIDCHFKCGRYDRAEELFEEMQER----GYFPCTTTYN-----IMINLLGEQERWEDVKRLLGNMRA----QGLLP-N 544 (664)
Q Consensus 479 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~t~~-----~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p-~ 544 (664)
-.|-..|.+..++++|.-+.....+- ++..-..-|. .+.-++...|.+..|.+..++..+ .|-.+ -
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 67777777777877777666554331 2111111222 233455667777667666666543 23222 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHh
Q 006012 545 VVTYTTLVDIYGQSGRFDDAIECLE 569 (664)
Q Consensus 545 ~~~~~~li~~~~~~g~~~~A~~~~~ 569 (664)
......+.+.|...|+.+.|..-++
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHH
Confidence 3344567788888888888776655
No 260
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.21 E-value=8.1 Score=32.40 Aligned_cols=90 Identities=18% Similarity=0.077 Sum_probs=47.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHH---HHHHHHHHHHcC
Q 006012 309 ALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERS-GVLPDEHT---YSLLIDAYANAG 384 (664)
Q Consensus 309 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~---~~~li~~~~~~g 384 (664)
++...|+++.|++.|.+.+..- +-+...||.-..++--.|+.++|..-+++..+. |.+ .... |---...|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 4556667777777776665542 225566666666666666666666666665543 222 2111 111222344455
Q ss_pred CHHHHHHHHHHHHhcC
Q 006012 385 RWESARIVLKEMEVSH 400 (664)
Q Consensus 385 ~~~~A~~l~~~m~~~~ 400 (664)
+-+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 5555555555554433
No 261
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.20 E-value=14 Score=35.14 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006012 193 PLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVI 272 (664)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li 272 (664)
+..|-.=+..-.+.|++++|...|+.+..+. +-+..+ ..+.-.++
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~----------------------------------~qa~l~l~ 78 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYS----------------------------------EQAQLDLA 78 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCccc----------------------------------HHHHHHHH
Confidence 3455555555678899999999999998763 222111 22223456
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006012 273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALS 311 (664)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 311 (664)
-++.+.+++++|+..+++..+.-.......|...|.+++
T Consensus 79 yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 79 YAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 677788888999888887776432223344555555555
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.91 E-value=5.7 Score=38.95 Aligned_cols=155 Identities=10% Similarity=0.029 Sum_probs=103.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCC
Q 006012 310 LSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDE----HTYSLLIDAYANAGR 385 (664)
Q Consensus 310 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~ 385 (664)
+...|+..+|...++++++. .+.|...++-.=++|...|+.+.....++++... -.+|. .....+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34578888888888888875 4557778887888888899988888888887753 11233 223344455567889
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 006012 386 WESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS---GVEPDTHFYNVMIDTFGKYNCLHHAMAA 462 (664)
Q Consensus 386 ~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A~~~ 462 (664)
+++|++.-++..+.+ +.|...-.+....+-..+++.++.++..+-... +.-.-..-|=...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999988888877655 457777777888888888888888876653321 0000111121222234455788888888
Q ss_pred HHHHH
Q 006012 463 FDRML 467 (664)
Q Consensus 463 ~~~m~ 467 (664)
|+.-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 87644
No 263
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.74 E-value=32 Score=38.41 Aligned_cols=273 Identities=10% Similarity=0.024 Sum_probs=150.0
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 006012 148 AVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCD 227 (664)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 227 (664)
++-..+.++...|....+-..-...+++.+++.+-.......+.+...-.....+....|+.++|.....++-..| ...
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~ 162 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSL 162 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCC
Confidence 4555555554445545566666667777788877766543446677666777888888999888888888887766 345
Q ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhCC
Q 006012 228 FINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAK------------AGDASKAMRFLGMAQGVG 295 (664)
Q Consensus 228 ~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~g 295 (664)
...++.++..+.+.|.+......+-+......|- ...-..+...... ..+...+..++..
T Consensus 163 p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~---~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~----- 234 (644)
T PRK11619 163 PNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGN---TGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART----- 234 (644)
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----
Confidence 6778888988888887776554444444444332 1122222221100 0111111111111
Q ss_pred CCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006012 296 LSPKTATYAAVITALS--NSGRTIEAEAVFEELKESG-LKPR--TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDE 370 (664)
Q Consensus 296 ~~~~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 370 (664)
++++...-..++-++. ...+.+.|..++....... ..+. ...+..+.......+...++...++...... .+.
T Consensus 235 ~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~ 312 (644)
T PRK11619 235 TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QST 312 (644)
T ss_pred cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCc
Confidence 1223211111122222 3345677888887764432 2211 1233344333334332456666666544332 234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 371 HTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMK 432 (664)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 432 (664)
.....-+....+.++++.+...+..|.... .-...-..-+.+++...|+.++|...|+.+.
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 444555555567888888888888774432 2233334445666666788888888887763
No 264
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.69 E-value=3.8 Score=39.13 Aligned_cols=80 Identities=20% Similarity=0.212 Sum_probs=34.3
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChHH
Q 006012 488 CGRYDRAEELFEEMQERG--YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGL-LP-NVVTYTTLVDIYGQSGRFDD 563 (664)
Q Consensus 488 ~g~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~ 563 (664)
.|++..|...|...++.. -.-....+..|..++...|+++.|..+|..+.+.-. .| -+..+.-|..+..+.|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 444555555555544431 011122333444455555555555555554444311 11 12344444444455555544
Q ss_pred HHHH
Q 006012 564 AIEC 567 (664)
Q Consensus 564 A~~~ 567 (664)
|...
T Consensus 234 A~at 237 (262)
T COG1729 234 ACAT 237 (262)
T ss_pred HHHH
Confidence 4444
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.53 E-value=15 Score=34.48 Aligned_cols=86 Identities=17% Similarity=0.130 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006012 195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVG 274 (664)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~ 274 (664)
.|..-..+|...+++++|...+.+..+. ..-|...|.. .+++- .+-.+.+++.+. .--+..|+.-..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-AKayE--------qaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-AKAYE--------QAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-HHHHH--------HHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 4555556666777777777766665532 1112111111 11111 111233333321 2234456667777
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 006012 275 FAKAGDASKAMRFLGMAQ 292 (664)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~ 292 (664)
|..+|..+.|-..+++.-
T Consensus 101 Y~E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAA 118 (308)
T ss_pred HHHhCCcchHHHHHHHHH
Confidence 888888777777666554
No 266
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.48 E-value=32 Score=38.03 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=65.4
Q ss_pred HHHHcccCCHHHHHHh---hCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 006012 170 IHALGRSEKLYEAFLL---SQRQRL---TPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNK 243 (664)
Q Consensus 170 i~~~~~~~~~~~A~~~---~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 243 (664)
|+=+.+.+++++|+.. ..+..+ -...+...|..+.-.|++++|-...-+|... +..-|..-+..+...+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 3344455678888877 222222 3357889999999999999999999998853 45566666666666655
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 006012 244 IDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAK 277 (664)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~ 277 (664)
. ..+...+.......+..+|..++..|..
T Consensus 439 l-----~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 L-----TDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred c-----chhhccCCCCCcccCchHHHHHHHHHHH
Confidence 4 2344444444444667777777777765
No 267
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.29 E-value=24 Score=36.31 Aligned_cols=139 Identities=11% Similarity=0.116 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 006012 475 TITWNTLIDCHFKCGRYDRAEELFEEMQERG-YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTY-TTLV 552 (664)
Q Consensus 475 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li 552 (664)
...|...|+.-.+..-++.|..+|-++.+.+ +.+++..+++++..++. |+..-|..+|+.-... -||...| ...+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456666666666666777777777777776 56677777777776654 5556666777654443 2343333 4455
Q ss_pred HHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012 553 DIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVT 628 (664)
Q Consensus 553 ~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 628 (664)
.-+...++-+.|..+|+..++.-. ... -...|..+|.--..-|+...|..+=++|.+ +.|-..+
T Consensus 474 ~fLi~inde~naraLFetsv~r~~----~~q------~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~ 537 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLE----KTQ------LKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENL 537 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHH----Hhh------hhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhH
Confidence 666667777777776653322111 000 012455555555566777777766666665 3444333
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.19 E-value=1.2 Score=29.43 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006012 478 WNTLIDCHFKCGRYDRAEELFEEMQER 504 (664)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (664)
|..+...|.+.|++++|.++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444455555555555555555444
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.17 E-value=20 Score=35.30 Aligned_cols=117 Identities=11% Similarity=0.021 Sum_probs=69.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHH
Q 006012 382 NAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDT----HFYNVMIDTFGKYNCLH 457 (664)
Q Consensus 382 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~ 457 (664)
..|+..+|-..++++.+. .+.|...+...=.+|...|+.+.....++++... ..+|. .+-....-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456666666667776654 3556666666667777777777777666666533 12232 22223333445666777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012 458 HAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEM 501 (664)
Q Consensus 458 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 501 (664)
+|++.-++..+.+ +.|.-.-.++...+-..|++.++.++..+-
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 7777666666544 345555555666666667777776665543
No 270
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.05 E-value=4.1 Score=39.57 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC
Q 006012 510 TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP 589 (664)
Q Consensus 510 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p 589 (664)
..++..++..+...|+++.+...++++...... +...|..++.+|.+.|+...|+..++++.+. .+...|+.|
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~------~~edlgi~P 225 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT------LAEELGIDP 225 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHH------hhhhcCCCc
Confidence 446677888889999999999999999997544 8899999999999999999999998765431 455669999
Q ss_pred CHHHHHHHHHHH
Q 006012 590 SNLALNSLINAF 601 (664)
Q Consensus 590 ~~~~~~~li~~~ 601 (664)
...+...+..+.
T Consensus 226 ~~~~~~~y~~~~ 237 (280)
T COG3629 226 APELRALYEEIL 237 (280)
T ss_pred cHHHHHHHHHHh
Confidence 998887776663
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.03 E-value=16 Score=33.82 Aligned_cols=224 Identities=18% Similarity=0.130 Sum_probs=145.0
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012 278 AGDASKAMRFLGMAQGVGLS-PKTATYAAVITALSNSGRTIEAEAVFEELKES-GLKPRTKAYNALLKGYVKMGYLKDAE 355 (664)
Q Consensus 278 ~g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~ 355 (664)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555555555543211 13566677777777788888877777776642 22335556666667777777788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 356 FVVSEMERSGVLPDEHTYSLLID-AYANAGRWESARIVLKEMEVSHA--KPNSFIYSRILAGYRDRGEWQRTFQVLKEMK 432 (664)
Q Consensus 356 ~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 432 (664)
+.+.........+ ......... .+...|+++.|...+++...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888777654332 122222333 67788888888888888755221 1233344444445677788888888888877
Q ss_pred HCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006012 433 SSGVEP-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD-TITWNTLIDCHFKCGRYDRAEELFEEMQERG 505 (664)
Q Consensus 433 ~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (664)
... .. ....+..+...+...++.+.+...+....... ++ ...+..+...+...+..+++...+.+.....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 653 22 46777777788888888889999888888653 32 3444444444557777888988888887764
No 272
>PRK11906 transcriptional regulator; Provisional
Probab=89.91 E-value=27 Score=36.38 Aligned_cols=80 Identities=11% Similarity=-0.027 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012 317 IEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEM 396 (664)
Q Consensus 317 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 396 (664)
.+|.++-+...+.+. -|......+.....-.++++.|..+|++....+.. ...+|........-.|+.++|.+.+++.
T Consensus 321 ~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344455555544432 25555555555555555566666666666554321 2334444444444456666666666654
Q ss_pred Hh
Q 006012 397 EV 398 (664)
Q Consensus 397 ~~ 398 (664)
.+
T Consensus 399 lr 400 (458)
T PRK11906 399 LQ 400 (458)
T ss_pred hc
Confidence 43
No 273
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.91 E-value=3.7 Score=36.60 Aligned_cols=116 Identities=15% Similarity=0.110 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 006012 526 WEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRF---DDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAF 601 (664)
Q Consensus 526 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~ 601 (664)
++.|.+..+.-...+ ..|...++.-..++....++ .++.+ ++++|+.-|++... +.|+. .++..+.++|
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~----miedAisK~eeAL~--I~P~~hdAlw~lGnA~ 79 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKK----MIEDAISKFEEALK--INPNKHDALWCLGNAY 79 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHH----HHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHH----HHHHHHHHHHHHHh--cCCchHHHHHHHHHHH
Confidence 344555554433333 22555555555555444433 33443 44566666776665 56775 4788888888
Q ss_pred HhcCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHhh
Q 006012 602 GEDQR-----------DAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFFNIYK 656 (664)
Q Consensus 602 ~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~~~~~~ 656 (664)
...+. +++|...|++..+ ..|+...|+.-+.... +|-++...+..+.
T Consensus 80 ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 80 TSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 65443 5556666666666 6899999998777653 4666655454443
No 274
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.90 E-value=12 Score=32.21 Aligned_cols=71 Identities=13% Similarity=0.046 Sum_probs=41.5
Q ss_pred HHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 486 FKCGRYDRAEELFEEMQERG--YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYG 556 (664)
Q Consensus 486 ~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 556 (664)
.+.|++++|.+.|+.+..+- -+-....-..++.++.+.+++++|...+++.++....-...-|...+.+++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 45677777777777776651 022334455666777777777777777777776544322333444444443
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.83 E-value=0.75 Score=28.88 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 593 ALNSLINAFGEDQRDAEAFAVLQYMK 618 (664)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~ 618 (664)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666677777777777777777644
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.67 E-value=0.82 Score=28.71 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 195 TYNALISACARNDDLEKALNLMSKMR 220 (664)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~ 220 (664)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 58899999999999999999999955
No 277
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.52 E-value=15 Score=32.67 Aligned_cols=123 Identities=19% Similarity=0.160 Sum_probs=66.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHH--HHHHHhcCCH
Q 006012 276 AKAGDASKAMRFLGMAQGVGLSPKT-ATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTK-AYNAL--LKGYVKMGYL 351 (664)
Q Consensus 276 ~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~l--i~~~~~~g~~ 351 (664)
.+.++.++|+..|..+.+.|...-. ....-......+.|+...|...|+++-.....|-.. -.--| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 4556777777777777766533221 122223344556677777777777766544333222 11111 1223455666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012 352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEV 398 (664)
Q Consensus 352 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 398 (664)
++.....+-+-..+-..-...-.+|.-+-.+.|++.+|.+.|+++..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66666665555444333344445555555666777777776666654
No 278
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.01 E-value=23 Score=34.40 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC
Q 006012 509 CTTTYNIMINLLGEQERWEDVKRLLGNMRAQ--GLLPNVVTYTTLVDIYGQSG 559 (664)
Q Consensus 509 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g 559 (664)
|...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..++..+.-.|
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 4444444555555555555555554444433 222 3344445555554444
No 279
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.98 E-value=1 Score=27.68 Aligned_cols=32 Identities=34% Similarity=0.249 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006012 592 LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD 625 (664)
Q Consensus 592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 625 (664)
.+|..+..+|...|++++|+..+++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4677888889999999999999998887 4554
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.70 E-value=7.2 Score=35.32 Aligned_cols=63 Identities=22% Similarity=0.217 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006012 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK--TATYAAVITALSNSGRTIEAEAVFEELKE 328 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 328 (664)
..+..+...|++.|+.++|++.|.++.+....+. ...+-.+|+.....+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566777888888888888888888776543333 44566777777777887777777666544
No 281
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.64 E-value=35 Score=35.86 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=23.2
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012 449 TFGKYNCLHHAMAAFDRMLSEGIE-PDTITWNTLIDCHFKCGRYDRAEELFEEM 501 (664)
Q Consensus 449 ~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 501 (664)
++-+.|+.++|.+.+.+|.+.... ........|+.++...+.+.++..++.+.
T Consensus 268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 333444555555555444432211 11223344455555555555555555444
No 282
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.11 E-value=19 Score=32.12 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=16.3
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 006012 288 LGMAQGVGLSPKTATYAAVITALSNSGRTIE 318 (664)
Q Consensus 288 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 318 (664)
++.+.+.+++|+...+..+++.+.+.|++..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3344445555555555555555555555433
No 283
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.76 E-value=33 Score=34.67 Aligned_cols=252 Identities=15% Similarity=0.091 Sum_probs=156.1
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006012 276 AKAGDASKAMRFLGMAQGVGLSPKTATYAA----VITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYL 351 (664)
Q Consensus 276 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 351 (664)
.-.|+++.|.+-|+.|.. |..+-.. |.-.--+.|..+.|.+.-+..-..-.. -...+...+...|..|++
T Consensus 131 l~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDW 204 (531)
T ss_pred HhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCCh
Confidence 345899999999998875 3333222 222334668888888777776554222 346778888899999999
Q ss_pred HHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHH
Q 006012 352 KDAEFVVSEMERSG-VLPDEHT--YSLLIDAYAN---AGRWESARIVLKEMEVSHAKPNSFI-YSRILAGYRDRGEWQRT 424 (664)
Q Consensus 352 ~~a~~~~~~m~~~g-~~~~~~~--~~~li~~~~~---~g~~~~A~~l~~~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~a 424 (664)
+.|+++++.-.... +.++..- -..|+.+-.. .-+...|...-.+..+ +.|+..- -.....++.+.|+..++
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhh
Confidence 99999998766432 3334321 2223322211 1234445444444333 3444432 23345778899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 425 FQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE-GI-EPDTITWNTLIDCHFKCGRYDRAEELFEEMQ 502 (664)
Q Consensus 425 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 502 (664)
-.+++.+=+....|+. .. +..+.+.|+. ++.-+++..+. .+ +.+..+.-.+..+-...|++..|..--+...
T Consensus 283 ~~ilE~aWK~ePHP~i--a~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 283 SKILETAWKAEPHPDI--AL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred hhHHHHHHhcCCChHH--HH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 9999998877545543 22 2334555553 33333332221 11 3356666777778888899988887776665
Q ss_pred HCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCC
Q 006012 503 ERGYFPCTTTYNIMINLLGE-QERWEDVKRLLGNMRAQGLLP 543 (664)
Q Consensus 503 ~~~~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~m~~~~~~p 543 (664)
.. .|....|..|.+.-.. .|+-.++.+.+.+.++.--.|
T Consensus 357 r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 357 RE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 54 5777788888776554 499999999999998764333
No 284
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.48 E-value=0.65 Score=28.77 Aligned_cols=32 Identities=9% Similarity=0.198 Sum_probs=20.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 006012 614 LQYMKENGLKPDVVTYTTLMKALIRVDKFHKVF 646 (664)
Q Consensus 614 ~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~ 646 (664)
+++.++.. +-|...|..|...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445421 335677777777777777777775
No 285
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=87.13 E-value=18 Score=31.14 Aligned_cols=53 Identities=11% Similarity=0.219 Sum_probs=22.0
Q ss_pred HHcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 381 ANAGRWESARIVLKEMEVSHA--KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS 433 (664)
Q Consensus 381 ~~~g~~~~A~~l~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 433 (664)
.+.|++++|.+.|+.+...-. +-....--.++.+|.+.+++++|...++..++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344445555444444443321 11222333344444444444444444444443
No 286
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.98 E-value=55 Score=36.31 Aligned_cols=102 Identities=11% Similarity=0.103 Sum_probs=66.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006012 272 IVGFAKAGDASKAMRFLGMAQGVGLSP---KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM 348 (664)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 348 (664)
|+.+.+.+.+++|+++-+.... ..| -...+..+|..+.-.|++++|-...-.|... +..-|-.-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 5567778888888887765443 233 2446778888888899999998888888764 556666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006012 349 GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN 382 (664)
Q Consensus 349 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 382 (664)
++.... +.-+.......+...|..++..+..
T Consensus 437 ~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 654443 2223333223455667776666665
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.94 E-value=0.6 Score=28.95 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=11.0
Q ss_pred CchHHHHHHHHHHHcccCCHHHH
Q 006012 160 YSYELLYSILIHALGRSEKLYEA 182 (664)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~A 182 (664)
|.+...|+.|...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 44444444444444444444444
No 288
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.92 E-value=1.6 Score=26.63 Aligned_cols=27 Identities=22% Similarity=0.059 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 593 ALNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
.|..+...+.+.|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 466777788888888888888888876
No 289
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=86.88 E-value=14 Score=29.77 Aligned_cols=88 Identities=15% Similarity=0.170 Sum_probs=63.0
Q ss_pred CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMS 217 (664)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (664)
......+|-.+.+|+...+. ....+.-+.+..+.+.|+|.+|... .....||...|-+|-. .+.|-.+++...+.
T Consensus 18 G~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 44567899999999998873 3345555667788899999999777 6667789899988765 68899999999999
Q ss_pred HHHHcCCCCChhhH
Q 006012 218 KMRQDGYHCDFINY 231 (664)
Q Consensus 218 ~m~~~g~~p~~~~~ 231 (664)
++...| .|....|
T Consensus 94 rla~~g-~~~~q~F 106 (116)
T PF09477_consen 94 RLASSG-SPELQAF 106 (116)
T ss_dssp HHCT-S-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 988776 3443333
No 290
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.27 E-value=24 Score=31.41 Aligned_cols=122 Identities=13% Similarity=0.050 Sum_probs=52.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCCHH
Q 006012 347 KMGYLKDAEFVVSEMERSGVLPDE-HTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSF---IYSRILAGYRDRGEWQ 422 (664)
Q Consensus 347 ~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~---~~~~ll~~~~~~g~~~ 422 (664)
+.+..++|+.-|..+.+.|...-+ -..--+.......|+...|...|+++-.....|-.. ....-...+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 334455555555555554432111 111112233445555566666666554433222221 0111112234455555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 006012 423 RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLS 468 (664)
Q Consensus 423 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 468 (664)
......+.+-..+-+.....-..|.-+-.+.|++..|.+.|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555555444333222233333444444555555555555555543
No 291
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.08 E-value=19 Score=34.95 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=61.9
Q ss_pred HcCCHHHHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHH
Q 006012 205 RNDDLEKALNLMSKMRQ-DGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIEC-DKIELDGQLLNDVIVGFAKAGDAS 282 (664)
Q Consensus 205 ~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~-~~~~~d~~~~~~li~~~~~~g~~~ 282 (664)
++..+.+|+.+|+...- ..+--|..+...+++......+.......++.+.+.. .+-.++..+.-.++..+++.+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 44456677777763322 2244466666666666655222111111222222222 233555556666666666666666
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006012 283 KAMRFLGMAQGV-GLSPKTATYAAVITALSNSGRTIEAEAVFE 324 (664)
Q Consensus 283 ~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 324 (664)
+-.++++..... +...|...|...|+...+.|+..-..++.+
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 666666555443 334455666666666666666554444443
No 292
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.95 E-value=43 Score=34.08 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP---CTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (664)
Q Consensus 474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 538 (664)
...+|..+...+.+.|.++.|...+..+...+... .......-.+.+-..|+..+|...+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566777777777777777777777776643111 233344445556666777777777777666
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.73 E-value=12 Score=33.95 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012 338 YNALLKGYVKMGYLKDAEFVVSEMERSGVLPD--EHTYSLLIDAYANAGRWESARIVLKEM 396 (664)
Q Consensus 338 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m 396 (664)
+..+...|++.|+.+.|.+.+.++.+....+. ...+-.+|......+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444445555555555555554444322111 223333444444444544444444443
No 294
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.43 E-value=52 Score=34.60 Aligned_cols=182 Identities=14% Similarity=0.212 Sum_probs=123.8
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006012 436 VEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNI 515 (664)
Q Consensus 436 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 515 (664)
-..|.....+++..++.+-.+.-.+.+..+|+..| -+-..|-.++.+|..+ ..++-..+|+++.+..+ .|++.-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHH
Confidence 35677888899999999999999999999999876 4677888999999988 67888999999998863 34444455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHC-CCC
Q 006012 516 MINLLGEQERWEDVKRLLGNMRAQGLLPN------VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTD-GLK 588 (664)
Q Consensus 516 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~-g~~ 588 (664)
|..-|.+ ++...+..+|.++... +.|. ..+|..|.... ..+.+.... +..++... |..
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~-----------l~~kiqt~lg~~ 202 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLR-----------LQKKIQTKLGEG 202 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHH-----------HHHHHHHhhccc
Confidence 5555555 8888899999888765 2221 12333333211 112222222 23333332 444
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 589 PSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALI 637 (664)
Q Consensus 589 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~ 637 (664)
--.+.+.-+..-|....++++|++++..+.+.+ .-|...-..++..+.
T Consensus 203 ~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 203 RGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred hHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 455677777788989999999999999888754 345555555555443
No 295
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.37 E-value=18 Score=37.47 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=73.2
Q ss_pred HHHhcCCHHHHHHHHHHHHH---CCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC
Q 006012 519 LLGEQERWEDVKRLLGNMRA---QGLLPN-----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS 590 (664)
Q Consensus 519 ~~~~~g~~~~a~~~~~~m~~---~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~ 590 (664)
-+.-.|++.+|.+++...-- .|...+ ...||.|.-...+.|.+.-+..+|. .|++-+..-...|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~----kAL~N~c~qL~~g~~~~ 324 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFL----KALRNSCSQLRNGLKPA 324 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHH----HHHHHHHHHHhccCCCC
Confidence 34556788888777653321 122112 2233555555666777776666654 34433444445566654
Q ss_pred H-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012 591 N-----------LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRV 639 (664)
Q Consensus 591 ~-----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~ 639 (664)
. .+||+ .-.|...|++-.|.+.|.+..+. +.-++..|-.|..+|...
T Consensus 325 ~~~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 325 KTFTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred cceehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 3 34443 34577899999999999999874 677899999999999754
No 296
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.96 E-value=0.035 Score=48.54 Aligned_cols=84 Identities=14% Similarity=0.253 Sum_probs=50.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006012 446 MIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQER 525 (664)
Q Consensus 446 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 525 (664)
++..+.+.+..+.+..+++.+.+.+...+....+.++..|++.++.++..++++... ..-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 345555666666777777777765555567777777777777777677777766111 1223445666666666
Q ss_pred HHHHHHHHHHH
Q 006012 526 WEDVKRLLGNM 536 (664)
Q Consensus 526 ~~~a~~~~~~m 536 (664)
++++..++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666655543
No 297
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.46 E-value=27 Score=31.34 Aligned_cols=121 Identities=14% Similarity=0.105 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhcCCHHHHHHHH-------HHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 006012 491 YDRAEELFEEMQERGYFPCTTTYNIMIN---LLGEQERWEDVKRLL-------GNMRAQGLLPN-VVTYTTLVDIYGQSG 559 (664)
Q Consensus 491 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~---~~~~~g~~~~a~~~~-------~~m~~~~~~p~-~~~~~~li~~~~~~g 559 (664)
++.|.+.++.-...+ +.|...++.-.. -+++..+..++.+++ ++.+. +.|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 344555555544443 344443333222 223333333343444 34443 4565 477888888887765
Q ss_pred ChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006012 560 RFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGL 622 (664)
Q Consensus 560 ~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 622 (664)
.+..-..--+...++|.+.|++..+ ..|+..+|+.-+... ++|-++..++.+.+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 4332222222344578888888776 479999998888766 356667777766543
No 298
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.86 E-value=20 Score=28.53 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=64.9
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012 141 SSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMSKM 219 (664)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 219 (664)
...++|-.+-+|+...+. ....+.-+-+..+...|+|.+|..+ .....||...|-+|-. .|.|..+++..-+.+|
T Consensus 19 HcHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRL 94 (115)
T ss_pred hHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 456889999999987762 2344445556788899999999998 5556789999988865 5778888888888888
Q ss_pred HHcCCCCChhhH
Q 006012 220 RQDGYHCDFINY 231 (664)
Q Consensus 220 ~~~g~~p~~~~~ 231 (664)
...| .|....|
T Consensus 95 a~sg-~p~lq~F 105 (115)
T TIGR02508 95 AASG-DPRLQTF 105 (115)
T ss_pred HhCC-CHHHHHH
Confidence 8877 4544444
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.77 E-value=10 Score=34.62 Aligned_cols=72 Identities=8% Similarity=0.094 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHhHHH
Q 006012 574 QAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKEN---GLKPDVVTYTTLMKALIRVDKFHKVF 646 (664)
Q Consensus 574 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~a~~~~g~~~~A~ 646 (664)
+|...|-++...+.--++.....|..-|. ..+.+++++++.+..+. +-.+|+..+.+|+..+.+.|++++|.
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 35555777777766556666666665554 78899999999999873 33778999999999999999999885
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.26 E-value=31 Score=30.33 Aligned_cols=52 Identities=19% Similarity=0.123 Sum_probs=30.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHc
Q 006012 276 AKAGDASKAMRFLGMAQGVGLSPKTATY-AAVITALSNSGRTIEAEAVFEELKES 329 (664)
Q Consensus 276 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~ 329 (664)
.+.++.+++..++..+... .|..... ..-...+.+.|++.+|.++|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3456777777777666553 3443222 22234456677777777777776654
No 301
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.99 E-value=21 Score=34.92 Aligned_cols=105 Identities=18% Similarity=0.267 Sum_probs=71.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006012 294 VGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESG---LKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDE 370 (664)
Q Consensus 294 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 370 (664)
.|.+....+...++..-....+++.+...+-+++... ..|+...+ ..++.+. .-+.++++.++..=++.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 4445566666666666666778888888777776421 12222222 2233322 33567888888888888888899
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006012 371 HTYSLLIDAYANAGRWESARIVLKEMEVSH 400 (664)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 400 (664)
++++.+|+.+.+.+++.+|..+.-.|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999998888888877776543
No 302
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=82.82 E-value=67 Score=33.83 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=33.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 375 LLIDAYANAGRWESARIVLKEMEVSHAK-PNSFIYSRILAGYRDRGEWQRTFQVLKEMK 432 (664)
Q Consensus 375 ~li~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 432 (664)
.+..+.-+.|+.++|++.+++|.+.... .+......|+.++...+.+.++..++.+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444455566666666666666543321 233355566666666666666666666644
No 303
>PRK09687 putative lyase; Provisional
Probab=82.05 E-value=55 Score=32.23 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHhcCCh----HHHHHHHHHH
Q 006012 298 PKTATYAAVITALSNSGRT----IEAEAVFEEL 326 (664)
Q Consensus 298 ~~~~~~~~li~~~~~~g~~----~~A~~l~~~m 326 (664)
+|...-...+.++.+.|+. .++...+..+
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 3444444445555555542 3444444444
No 304
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.89 E-value=86 Score=34.42 Aligned_cols=85 Identities=12% Similarity=-0.037 Sum_probs=40.3
Q ss_pred hcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012 312 NSGRTIEAEAVFEELKE-------SGLKPRTKAYNALLKGYVKMG-----YLKDAEFVVSEMERSGVLPDEHTYSLLIDA 379 (664)
Q Consensus 312 ~~g~~~~A~~l~~~m~~-------~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 379 (664)
...+.+.|...|+.+.+ .+ .......+..+|.+.. +.+.|..++....+.|.. +....-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 44566666666666654 33 2223444555554432 445566666666655532 33222221111
Q ss_pred HHH-cCCHHHHHHHHHHHHhcC
Q 006012 380 YAN-AGRWESARIVLKEMEVSH 400 (664)
Q Consensus 380 ~~~-~g~~~~A~~l~~~m~~~~ 400 (664)
... ..+...|.++|......|
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcC
Confidence 111 134556666666665554
No 305
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.87 E-value=28 Score=37.24 Aligned_cols=100 Identities=17% Similarity=0.119 Sum_probs=53.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006012 486 FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAI 565 (664)
Q Consensus 486 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 565 (664)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.+.+... |..|+-.+...|+-+.-.
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 45666666666654432 345566777777777777777666665543 344555555555544211
Q ss_pred HHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012 566 ECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYM 617 (664)
Q Consensus 566 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 617 (664)
.+ -....+.|. .|....+|...|++++..+++.+-
T Consensus 713 ~l-----------a~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VL-----------ASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HH-----------HHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 11 011111221 233334566678888887776544
No 306
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.86 E-value=53 Score=31.95 Aligned_cols=58 Identities=9% Similarity=0.149 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 006012 409 SRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRML 467 (664)
Q Consensus 409 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 467 (664)
......|..+|.+.+|.++.+...... +.+...+-.++..++..|+--.+.+-++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344456666666667766666666543 4555666666666777776666666555554
No 307
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.83 E-value=41 Score=30.65 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=12.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 006012 598 INAFGEDQRDAEAFAVLQYMKEN 620 (664)
Q Consensus 598 i~~~~~~g~~~~A~~~~~~m~~~ 620 (664)
.+++...|+.++|..-|++.++.
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHc
Confidence 35555555555555555555553
No 308
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=81.32 E-value=4.9 Score=24.48 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006012 194 LTYNALISACARNDDLEKALNLMSKMRQD 222 (664)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 222 (664)
.+|..+...|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57899999999999999999999998875
No 309
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.31 E-value=48 Score=31.13 Aligned_cols=148 Identities=16% Similarity=0.221 Sum_probs=79.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHH-HHHHHHHHHHhcCC
Q 006012 486 FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMR----AQGLLPNVV-TYTTLVDIYGQSGR 560 (664)
Q Consensus 486 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~----~~~~~p~~~-~~~~li~~~~~~g~ 560 (664)
.-.+.+++|.++|.+... .|--.++|..|-..|-++- +.|-+-|.. +|.-... |.+.++
T Consensus 25 gg~~k~eeAadl~~~Aan---------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~-cykk~~ 88 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAAN---------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAAN-CYKKVD 88 (288)
T ss_pred CCCcchHHHHHHHHHHHH---------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH-HhhccC
Confidence 345688899888876532 1222233333333333222 123333332 3333333 445568
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH--CCCCCCHHH---HHHHHH
Q 006012 561 FDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGED-QRDAEAFAVLQYMKE--NGLKPDVVT---YTTLMK 634 (664)
Q Consensus 561 ~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~--~g~~p~~~~---~~~l~~ 634 (664)
+++|.++++ .|+++|..|-+.. --......+...|-.. .++++|+..++..-+ .|-..+... +..+..
T Consensus 89 ~~eAv~cL~----~aieIyt~~Grf~--~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 89 PEEAVNCLE----KAIEIYTDMGRFT--MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred hHHHHHHHH----HHHHHHHhhhHHH--HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 888887754 5677777776531 1122344555555444 678888888888766 232223222 223333
Q ss_pred HHHhcCCHhHHHHHHHHHHHh
Q 006012 635 ALIRVDKFHKVFSSYLFFNIY 655 (664)
Q Consensus 635 a~~~~g~~~~A~~~~~~~~~~ 655 (664)
.-...+++.+|+++|+..-..
T Consensus 163 yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888888854433
No 310
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.81 E-value=15 Score=29.33 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=17.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 612 AVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 612 ~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
+-++.+....+.|++.+..+.++||.|.+++.-|.+++|
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE 69 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILE 69 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333334344455555555555555555555555555555
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.62 E-value=15 Score=39.18 Aligned_cols=25 Identities=20% Similarity=0.003 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHH
Q 006012 441 HFYNVMIDTFGKYNCLHHAMAAFDR 465 (664)
Q Consensus 441 ~~~~~li~~~~~~g~~~~A~~~~~~ 465 (664)
.-|..|.++..+.+++..|.+.|..
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHh
Confidence 3344444444444444444444433
No 312
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.00 E-value=17 Score=33.32 Aligned_cols=73 Identities=14% Similarity=0.076 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHH
Q 006012 492 DRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ---GLLPNVVTYTTLVDIYGQSGRFDDAI 565 (664)
Q Consensus 492 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~ 565 (664)
++|.+.|-.+...+..-++.....|..-|. ..+.+++.+++.+..+. +-.+|+..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 667777777777665555554444444444 56777777777777654 33567888888888888888887764
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.92 E-value=4.6 Score=25.84 Aligned_cols=28 Identities=39% Similarity=0.452 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 592 LALNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777778888888887777764
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.53 E-value=5 Score=25.67 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006012 193 PLTYNALISACARNDDLEKALNLMSKMRQ 221 (664)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 221 (664)
..+++.|...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35789999999999999999999998765
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.28 E-value=6.1 Score=23.86 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006012 194 LTYNALISACARNDDLEKALNLMSKMRQD 222 (664)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 222 (664)
..|..+...|...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46888999999999999999999998875
No 316
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.96 E-value=91 Score=32.91 Aligned_cols=179 Identities=12% Similarity=0.142 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006012 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL 341 (664)
Q Consensus 262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 341 (664)
..|....-+++..+...-+..-...+..+|...| .+...|..++.+|..+ .-++-..+++++.+..+. |.+.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4556666777777777777777777777777754 5667778888888777 556667777777776553 44444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Q 006012 342 LKGYVKMGYLKDAEFVVSEMERSGVLP--D---EHTYSLLIDAYANAGRWESARIVLKEMEVS-HAKPNSFIYSRILAGY 415 (664)
Q Consensus 342 i~~~~~~g~~~~a~~~~~~m~~~g~~~--~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~~~~~~~~~ll~~~ 415 (664)
...|-+ ++.+.+...|.++..+=+.. + ...|.-|+..- ..+.+..+.+...+... |...-.+.+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444444 67777777777665432210 1 12444444311 34566666666666542 3344455555566677
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 416 RDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMID 448 (664)
Q Consensus 416 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 448 (664)
....++++|++++..+.+.. .-|...-..++.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 77778888888887776654 334333333433
No 317
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.92 E-value=35 Score=33.47 Aligned_cols=48 Identities=19% Similarity=0.307 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 006012 420 EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRML 467 (664)
Q Consensus 420 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 467 (664)
+.++++.++..=++.|+-||..+++.+|+.+.+.+++.+|..+.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555555555555666666666666666665555555554444
No 318
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.37 E-value=3.8 Score=24.92 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 593 ALNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466667777777788888777777766
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.33 E-value=8 Score=30.50 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=23.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 579 FRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMK 618 (664)
Q Consensus 579 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 618 (664)
++.+....+.|++....+.+.+|.+.+++.-|+++++-.+
T Consensus 30 mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 30 LNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444556666666666666666666666666666554
No 320
>PRK09687 putative lyase; Provisional
Probab=77.35 E-value=77 Score=31.19 Aligned_cols=235 Identities=11% Similarity=0.032 Sum_probs=148.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHH
Q 006012 297 SPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYL----KDAEFVVSEMERSGVLPDEHT 372 (664)
Q Consensus 297 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~~~~~~ 372 (664)
.+|.......+.++...|. .++...+..+... +|...-...+.++...|+. +++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 4666666677777777764 3344444444432 3566666677778888763 5677777776443 356666
Q ss_pred HHHHHHHHHHcCCH-----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012 373 YSLLIDAYANAGRW-----ESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMI 447 (664)
Q Consensus 373 ~~~li~~~~~~g~~-----~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 447 (664)
-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ..+...+-.+.+ .++..+-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHH
Confidence 66666666665421 233344333332 3466777778888888776 456666666665 35556666777
Q ss_pred HHHhccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006012 448 DTFGKYN-CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERW 526 (664)
Q Consensus 448 ~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 526 (664)
.++++.+ +...+...+..+.. .++..+-...+.++.+.|+ ..|+..+-+..+.+. .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH
Confidence 7777653 23456666666664 4577777788888888887 567777776666542 234677788888884
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 527 EDVKRLLGNMRAQGLLPNVVTYTTLVDIYG 556 (664)
Q Consensus 527 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 556 (664)
+|...+..+.+. .||..+-...+.++.
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 677788777764 347776666666654
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.81 E-value=19 Score=33.26 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 006012 479 NTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ--GLLPNVVTYTTLVDI 554 (664)
Q Consensus 479 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~ 554 (664)
+..++.+.+.+...+|+...++-.+.. +-|..+-..+++.+|-.|+|++|..-++-.-+. ...+...+|..+|.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 444556667777777777777776665 455666667777778888888877666655543 223345566666554
No 322
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=74.67 E-value=99 Score=31.14 Aligned_cols=129 Identities=12% Similarity=0.063 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHH
Q 006012 491 YDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQ---SGRFDDAIEC 567 (664)
Q Consensus 491 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~ 567 (664)
.+.-+.++++.++.+ +-+...+..++..+.+....++..+-|+++...... +...|...++.... .-.+++...+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 456677788877775 567777888888888888888888888888886432 67788887776554 3346666666
Q ss_pred HhhhHHHHHHHHHHHHHCC-----CCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC
Q 006012 568 LEGLSDQAVNAFRVMRTDG-----LKPSN-----LALNSLINAFGEDQRDAEAFAVLQYMKENGL-KPD 625 (664)
Q Consensus 568 ~~~~~~~a~~~~~~m~~~g-----~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~ 625 (664)
|.. ++..+....... -.++. ..+.-+..-+.++|..+.|+.+++-+++.++ .|.
T Consensus 125 y~~----~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 125 YEK----CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHH----HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 543 333333333221 01111 1233334455678999999999999998664 444
No 323
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.11 E-value=1.4e+02 Score=32.72 Aligned_cols=180 Identities=19% Similarity=0.152 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHH----H-HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHc
Q 006012 316 TIEAEAVFEELKESGLKPRTKAYNALLK----G-YVKMGYLKDAEFVVSEMER-------SGVLPDEHTYSLLIDAYANA 383 (664)
Q Consensus 316 ~~~A~~l~~~m~~~~~~p~~~~~~~li~----~-~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~ 383 (664)
..+|.+.++...+.|. ...-..+.. + +....+++.|...++.+.+ .| +.....-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4456666666665542 222222222 2 4456688999999988876 44 334556677777664
Q ss_pred C-----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCC
Q 006012 384 G-----RWESARIVLKEMEVSHAKPNSFIYSRILAGYRD-RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTF--GKYNC 455 (664)
Q Consensus 384 g-----~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~ 455 (664)
. +.+.|..++.+..+.| .|+...+-..+..... ..+...|.++|...-+.|. +...-+.+++-.. .-..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCC
Confidence 3 6677999998888776 3444444333333333 3467899999999888873 2332222222222 23457
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006012 456 LHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG 505 (664)
Q Consensus 456 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (664)
...|..++.+..+.| .|....-...+..+.. ++++.+.-.+..+.+.|
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 888889998888877 3332222233334444 77777777777776665
No 324
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.86 E-value=92 Score=30.38 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHh
Q 006012 593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFFNIY 655 (664)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~~~~~ 655 (664)
+++.....|..+|.+.+|+++.++.++.+ +.+...+-.|+..|...|+--.|.+.|+.++..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 45556678889999999999999888742 446777888899999999988898888876553
No 325
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.66 E-value=1.4e+02 Score=34.40 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=29.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 006012 377 IDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRD 417 (664)
Q Consensus 377 i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~ 417 (664)
+-.|......+-+...++.+....-.++....+.++..|++
T Consensus 598 Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 598 VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 34466777788888888888776666677777777777754
No 326
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.37 E-value=69 Score=28.27 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=26.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006012 346 VKMGYLKDAEFVVSEMERSGVL-PDEHTYSLLIDAYANAGRWESARIVLKEMEVS 399 (664)
Q Consensus 346 ~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 399 (664)
.+.++.+++..+++.+.-..+. +...++. ...+.+.|++.+|+.+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445666666666666543211 1122222 22345666666666666666543
No 327
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.82 E-value=32 Score=31.38 Aligned_cols=21 Identities=10% Similarity=0.050 Sum_probs=13.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 006012 519 LLGEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 519 ~~~~~g~~~~a~~~~~~m~~~ 539 (664)
-+...|++++|..-|.+.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~ 124 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES 124 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh
Confidence 355667777777777766664
No 328
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.77 E-value=1.5 Score=38.13 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=27.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006012 481 LIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLG 534 (664)
Q Consensus 481 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 534 (664)
+|..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444555555555555555554434445555555555555554444444444
No 329
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=71.61 E-value=1.9e+02 Score=32.98 Aligned_cols=55 Identities=13% Similarity=-0.058 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHH--HhcCCHhHHHHHHH
Q 006012 596 SLINAFGEDQRDAEAFAVLQYMKENG----LKPDVVTYTTLMKAL--IRVDKFHKVFSSYL 650 (664)
Q Consensus 596 ~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~l~~a~--~~~g~~~~A~~~~~ 650 (664)
.|+......|+.++|...++++.... ..++.......+... ...|+..++.....
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~ 683 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLL 683 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHH
Confidence 67788888999999999999887632 233444444444433 34677666655443
No 330
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=71.33 E-value=1.6e+02 Score=31.91 Aligned_cols=186 Identities=14% Similarity=0.123 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 006012 439 DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYF--PCTTTYNIM 516 (664)
Q Consensus 439 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~l 516 (664)
+..+|..-+..-.+.|+.+.+.-.|++..-. +..=...|--.+.-....|+.+-|..++....+-.++ |....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3455666666666666666666666665421 0011122333333333346666666665554443222 222222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012 517 INLLGEQERWEDVKRLLGNMRAQGLLPNVV-TYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALN 595 (664)
Q Consensus 517 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 595 (664)
+ +...|+++.|..+++.....- |+.. .-..-+..-.+.|+.+.+.... +++..... |-. +.....
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~--------~l~s~~~~-~~~-~~~i~~ 440 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKN--------ELYSSIYE-GKE-NNGILE 440 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHH--------HHHHHhcc-ccc-CcchhH
Confidence 2 334566777777777666542 3321 1122233344555555544200 00111110 100 111111
Q ss_pred HHH-----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012 596 SLI-----NAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVD 640 (664)
Q Consensus 596 ~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g 640 (664)
.+. -.+.-.++.+.|..++.+|.+. ++++...|..+++.....+
T Consensus 441 ~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 441 KLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 111 1122256667777777777663 4555566666666554443
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=70.37 E-value=6.9 Score=22.30 Aligned_cols=22 Identities=14% Similarity=0.013 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHH
Q 006012 629 YTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 629 ~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
...+..++...|+.++|.+.++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3456666667777777766654
No 332
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.24 E-value=72 Score=27.64 Aligned_cols=94 Identities=9% Similarity=0.112 Sum_probs=51.2
Q ss_pred HHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Q 006012 325 ELKESGLKPRT--KAYNALLKGYVKMGYLKDAEFVVSEMERSGV-----LPDEHTYSLLIDAYANAGR-WESARIVLKEM 396 (664)
Q Consensus 325 ~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m 396 (664)
.|.+.+..++. ...|.++......+++.....+++.+..... ..+...|..++.+..+... .--+..+|..|
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 34444444443 2346666666666677776666666632110 1234456666666655444 34455566666
Q ss_pred HhcCCCCCHHHHHHHHHHHHhc
Q 006012 397 EVSHAKPNSFIYSRILAGYRDR 418 (664)
Q Consensus 397 ~~~~~~~~~~~~~~ll~~~~~~ 418 (664)
++.+.+.+..-|..++.++.+.
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcC
Confidence 6555566666666666655544
No 333
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=70.22 E-value=1.1e+02 Score=29.85 Aligned_cols=115 Identities=8% Similarity=0.000 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012 280 DASKAMRFLGMAQG-VGLSPKTATYAAVITALSNS-G-RTIEAEAVFEELKE-SGLKPRTKAYNALLKGYVKMGYLKDAE 355 (664)
Q Consensus 280 ~~~~A~~~~~~~~~-~g~~~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~ 355 (664)
.+.+|+++|+.... ..+-.|......+++.+... + ....-.++.+-+.. .+..++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663221 12334566666666666552 2 12222233333332 234556666677777777777777777
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012 356 FVVSEMERS-GVLPDEHTYSLLIDAYANAGRWESARIVLK 394 (664)
Q Consensus 356 ~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 394 (664)
++++..... +...|...|..+|......|+..-..++.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 777776654 555577777777777777777766555554
No 334
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=70.03 E-value=8.9 Score=22.87 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006012 195 TYNALISACARNDDLEKALNLMSKMRQD 222 (664)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 222 (664)
++-.+..++.+.|++++|++.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445677888999999999999999876
No 335
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=69.34 E-value=58 Score=26.17 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012 248 LLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQG 293 (664)
Q Consensus 248 ~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 293 (664)
..++-+..+....+-|+..+..+.+.+|-+.+++..|.++|+.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3455556666666677777777777777777777777777776653
No 336
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.90 E-value=15 Score=27.86 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=31.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHhcCCHhHHHHH
Q 006012 603 EDQRDAEAFAVLQYMKENGLKP-D-VVTYTTLMKALIRVDKFHKVFSS 648 (664)
Q Consensus 603 ~~g~~~~A~~~~~~m~~~g~~p-~-~~~~~~l~~a~~~~g~~~~A~~~ 648 (664)
...+.++|+..|+..++.-..+ + ..++..|+.+++..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888877643222 2 24666777788888888777765
No 337
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.04 E-value=2.3e+02 Score=32.26 Aligned_cols=130 Identities=13% Similarity=0.088 Sum_probs=81.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006012 274 GFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKD 353 (664)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 353 (664)
.+..+|+++.|++.-.++ .+..+|..|+....+.|+.+-|+-.|++.+. |+.|--.|.-.|+.++
T Consensus 652 LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eK 716 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEK 716 (1202)
T ss_pred eehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHH
Confidence 456789999998876554 3778999999999999999999999988764 3445555667788887
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 354 AEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS 433 (664)
Q Consensus 354 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 433 (664)
..++.+....++ |..+. .... .-.|++++-.++++..... + ..|. .-..+|.-++|.++.++...
T Consensus 717 L~Km~~iae~r~---D~~~~-~qna--lYl~dv~ervkIl~n~g~~----~-layl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 717 LSKMMKIAEIRN---DATGQ-FQNA--LYLGDVKERVKILENGGQL----P-LAYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHHHhhh---hhHHH-HHHH--HHhccHHHHHHHHHhcCcc----c-HHHH----HHhhcCcHHHHHHHHHhhcc
Confidence 777766665431 32221 1111 2246666666666543221 1 1111 12235666677777776655
No 338
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.01 E-value=1.3e+02 Score=29.27 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=72.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHH
Q 006012 485 HFKCGRYDRAEELFEEMQERGYFPCTTT-------YNIMINLLGEQERWEDVKRLLGNMRA----QGLLPNVVTYTTLVD 553 (664)
Q Consensus 485 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t-------~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~~~li~ 553 (664)
..+.+++++|+..+.++..+|+..+..+ ...+...|...|+.....+......+ ..-.-...+..+|+.
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 3445566666666666666555444333 33455666666665544444332221 111112345555665
Q ss_pred HHHh-cCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH----HHHHCCCCCCHH
Q 006012 554 IYGQ-SGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQ----YMKENGLKPDVV 627 (664)
Q Consensus 554 ~~~~-~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~ 627 (664)
.+.. ...++.-+++....++-|.+--+.|.+. ..-.-++.++.+.|.+.+|+.+.. ++.+.+-+|+..
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~------~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRL------ELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 5543 3345666666665555554444444432 123457888899999999987654 444444455543
No 339
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.96 E-value=1.2e+02 Score=31.67 Aligned_cols=139 Identities=14% Similarity=0.097 Sum_probs=61.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHH
Q 006012 202 ACARNDDLEKALNLMSKMRQDGYHCDFIN--YSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQ--LLNDVIVGFAK 277 (664)
Q Consensus 202 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~--~~~~li~~~~~ 277 (664)
..++.|+.+-+. .+.+.|..|+... ..+.+...+..|.. .+.+.+.+.|..++.. .....+...+.
T Consensus 8 ~A~~~g~~~iv~----~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~------~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 8 DAILFGELDIAR----RLLDIGINPNFEIYDGISPIKLAMKFRDS------EAIKLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHhCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHHcCCH------HHHHHHHhCCCCccccCCCcccHHHHHHH
Confidence 344556654433 3344565554432 22344444555554 3444555555444322 11234555566
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHH
Q 006012 278 AGDASKAMRFLGMAQGVGLSPKTA---TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKA--YNALLKGYVKMGYLK 352 (664)
Q Consensus 278 ~g~~~~A~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~ 352 (664)
.|+.+.+..+++. |...+.. .-.+.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+
T Consensus 78 ~g~~~~v~~Ll~~----~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~ 149 (413)
T PHA02875 78 EGDVKAVEELLDL----GKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK 149 (413)
T ss_pred CCCHHHHHHHHHc----CCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 7777665554432 2111100 011233334445554 34444455555543221 123444455666655
Q ss_pred HHHHHH
Q 006012 353 DAEFVV 358 (664)
Q Consensus 353 ~a~~~~ 358 (664)
-+..++
T Consensus 150 ~v~~Ll 155 (413)
T PHA02875 150 GIELLI 155 (413)
T ss_pred HHHHHH
Confidence 444333
No 340
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=66.76 E-value=1.4e+02 Score=29.65 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006012 545 VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNS-LINAFGEDQRDAEAFAVLQYMKENGLK 623 (664)
Q Consensus 545 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~ 623 (664)
...+.....-||+-|+.+.|.+.+... +++-...|.+-|.+.+.. |.-.|..+.-+.+-++..+.+.+.|-.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t-------~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgD 176 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKT-------YEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD 176 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHH-------HHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 345566677888888888888876533 344445577777765543 333344444556666667777777766
Q ss_pred CCH----HHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 624 PDV----VTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 624 p~~----~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
.+. .+|..+-. ....+|.+|-.+|-
T Consensus 177 WeRrNRlKvY~Gly~--msvR~Fk~Aa~Lfl 205 (393)
T KOG0687|consen 177 WERRNRLKVYQGLYC--MSVRNFKEAADLFL 205 (393)
T ss_pred hhhhhhHHHHHHHHH--HHHHhHHHHHHHHH
Confidence 654 34444332 23456777766654
No 341
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=66.05 E-value=2.2e+02 Score=31.71 Aligned_cols=186 Identities=11% Similarity=0.106 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHH-cCCCC--CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHHcCCH
Q 006012 316 TIEAEAVFEELKE-SGLKP--RTKAYNALLKGYV-KMGYLKDAEFVVSEMERSGVLPDE-----HTYSLLIDAYANAGRW 386 (664)
Q Consensus 316 ~~~A~~l~~~m~~-~~~~p--~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~~~~-----~~~~~li~~~~~~g~~ 386 (664)
+..|++.++-+.+ ..+.| +..++-.+...+. ...+++.|+..+.+....--.++. .+...++..|.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 4455666666653 33333 2334445555554 556777777777765432212221 1123445555555555
Q ss_pred HHHHHHHHHHHhcC----CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHh--ccCCH
Q 006012 387 ESARIVLKEMEVSH----AKPNSFIYSRI-LAGYRDRGEWQRTFQVLKEMKSSG---VEPDTHFYNVMIDTFG--KYNCL 456 (664)
Q Consensus 387 ~~A~~l~~~m~~~~----~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~--~~g~~ 456 (664)
. |...+++..+.- ..+-...|..+ +..+...+++..|.+.++.+...- ..|...++..++.+.. +.+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 776666654421 11222223333 222222356666666666654321 1333344444444332 33444
Q ss_pred HHHHHHHHHHHHCCC---------CCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHH
Q 006012 457 HHAMAAFDRMLSEGI---------EPDTITWNTLIDCH--FKCGRYDRAEELFEEMQ 502 (664)
Q Consensus 457 ~~A~~~~~~m~~~g~---------~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~ 502 (664)
+++.+..+.+..... .|-..+|..+++.+ ...|+++.+...++++.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555432211 12344444444433 33455555555554443
No 342
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=65.30 E-value=17 Score=21.82 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006012 194 LTYNALISACARNDDLEKALNLMSKMRQD 222 (664)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 222 (664)
.+|..+...|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36888899999999999999999998764
No 343
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.29 E-value=80 Score=30.59 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=24.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-----cCCHHHHHHHH
Q 006012 443 YNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK-----CGRYDRAEELF 498 (664)
Q Consensus 443 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-----~g~~~~A~~~~ 498 (664)
....|-.|.|.++...+.++-..-+...-..+...|.+++..|.. .|.+++|+++.
T Consensus 121 leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 121 LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 334444445555555554444444432111222234444444433 35555555554
No 344
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.28 E-value=52 Score=26.91 Aligned_cols=49 Identities=12% Similarity=0.234 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--C--CCCC-HHHHHHHHHHHHhcCC
Q 006012 593 ALNSLINAFGEDQRDAEAFAVLQYMKEN--G--LKPD-VVTYTTLMKALIRVDK 641 (664)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g--~~p~-~~~~~~l~~a~~~~g~ 641 (664)
-|..|+..|...|.+++|++++.+..+. + ..+. ......+++.+.+.|.
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv~yL~~L~~ 94 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIVQYLQKLGN 94 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHHHHHHhCCh
Confidence 4889999999999999999999998871 1 1111 1222335666666653
No 345
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=63.91 E-value=25 Score=29.34 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=19.9
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 584 TDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 584 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
...+.|++.....-+.+|.+.+++.-|+++|+-.+.
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 335555555555555555555555555555555443
No 346
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=63.82 E-value=51 Score=30.63 Aligned_cols=54 Identities=11% Similarity=0.014 Sum_probs=25.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006012 272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEEL 326 (664)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 326 (664)
+..+.+.+.+.+|+...+.-++.. +-|..+-..+++.+|-.|++++|..-++..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 344444455555555544443332 223444445555555555555554444433
No 347
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.14 E-value=4.3e+02 Score=34.02 Aligned_cols=314 Identities=11% Similarity=0.018 Sum_probs=156.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 305 AVITALSNSGRTIEAEAVFEEL----KESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAY 380 (664)
Q Consensus 305 ~li~~~~~~g~~~~A~~l~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 380 (664)
.+..+-.+.+.+..|.-.++.- .+... ....|..+...|...+++|....+...-.. +...+ .-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~--~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKET--EEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHH--HHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHH
Confidence 4445666777888888888772 22211 233445555588888888888777764211 11222 234445
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCCHHHH
Q 006012 381 ANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFY-NVMIDTFGKYNCLHHA 459 (664)
Q Consensus 381 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A 459 (664)
...|++..|...|+.+.+.+ ++...+++.++......|.++.+....+-..... .+....+ +.-+.+--+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhh
Confidence 67889999999999988765 3446677777777777777777776555544332 2222222 3334444666777766
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH--HHHHHHcCC--HHHHHHHHHHHHHC--------CCC-CCHHHHHHHHHHHHhcCCH
Q 006012 460 MAAFDRMLSEGIEPDTITWNTL--IDCHFKCGR--YDRAEELFEEMQER--------GYF-PCTTTYNIMINLLGEQERW 526 (664)
Q Consensus 460 ~~~~~~m~~~g~~~~~~~~~~l--i~~~~~~g~--~~~A~~~~~~m~~~--------~~~-p~~~t~~~ll~~~~~~g~~ 526 (664)
+..+. . .+..+|... .....+..+ .-.-.+..+.+.+. +.. --...|..+++...-.
T Consensus 1538 e~~l~--~-----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~--- 1607 (2382)
T KOG0890|consen 1538 ESYLS--D-----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL--- 1607 (2382)
T ss_pred hhhhh--c-----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH---
Confidence 66655 1 122223222 222222111 11111222222211 000 0112233333322211
Q ss_pred HHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 006012 527 EDVKRLLGNMRAQGLLPNVV------TYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLIN 599 (664)
Q Consensus 527 ~~a~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~ 599 (664)
+-........ ++.++.. -|-.-+. ..+....+.+-+- ..-...+..-.+.+.+- -..+|-....
T Consensus 1608 -el~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~---~tq~s~~~~epIL---a~RRs~l~~~~~~~~~~~~ge~wLqsAr 1678 (2382)
T KOG0890|consen 1608 -ELENSIEELK--KVSYDEDSANNSDNWKNRLE---RTQPSFRIKEPIL---AFRRSMLDLRMRSNLKSRLGECWLQSAR 1678 (2382)
T ss_pred -HHHHHHHHhh--ccCccccccccchhHHHHHH---HhchhHHHHhHHH---HHHHHHHHHhccccccchhHHHHHHHHH
Confidence 1111111111 1222221 1111111 1111111111110 00000011111112222 2347888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 600 AFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 600 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
.....|+++.|...+-.+.+.+ -...+.-.+.-+...|+...|..+++
T Consensus 1679 iaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq 1726 (2382)
T KOG0890|consen 1679 IARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQ 1726 (2382)
T ss_pred HHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHH
Confidence 8999999999999888887754 23455566778889999999999888
No 348
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.08 E-value=2e+02 Score=30.24 Aligned_cols=125 Identities=12% Similarity=0.114 Sum_probs=83.4
Q ss_pred HHHHHHcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006012 272 IVGFAKAGDASKAMR-FLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY 350 (664)
Q Consensus 272 i~~~~~~g~~~~A~~-~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 350 (664)
|.--...|+...|-+ ++.-+....-.|+.+...+. .....|.++.+.+.+....+. +.....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 333445688877765 44444443334555444443 456779999998888766542 23355778889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006012 351 LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSH 400 (664)
Q Consensus 351 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 400 (664)
+++|..+-..|....++ +...........-..|-++++...++++...+
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999999998877665 44444333333445677889998888886554
No 349
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=62.25 E-value=2e+02 Score=29.90 Aligned_cols=56 Identities=7% Similarity=-0.066 Sum_probs=32.3
Q ss_pred HHHHHHHHcccCCHHHHHHhhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006012 166 YSILIHALGRSEKLYEAFLLSQRQRLTP------LTYNALISACARNDDLEKALNLMSKMRQ 221 (664)
Q Consensus 166 ~~~li~~~~~~~~~~~A~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 221 (664)
.+.-...|...-...+......+..-+. .--|-++.-|...|+..+|....+++..
T Consensus 181 ~~~aeksylsap~hae~ve~~wGg~~n~t~EEvK~kIn~~l~eyv~~getrea~rciR~L~v 242 (645)
T KOG0403|consen 181 INTAEKSYLSAPHHAELVELFWGGETNATVEEVKNKINGNLIEYVEIGETREACRCIRELGV 242 (645)
T ss_pred HHHHHhhccCCCchhhHHHhhhCCCccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhCC
Confidence 3444445555444444444333332222 2356677788899998888888877654
No 350
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=62.15 E-value=1.5e+02 Score=28.22 Aligned_cols=80 Identities=26% Similarity=0.273 Sum_probs=35.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChH
Q 006012 485 HFKCGRYDRAEELFEEMQERGYFPCTTT-YNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYT-TLVDIYGQSGRFD 562 (664)
Q Consensus 485 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~ 562 (664)
|....+++.|+..|.+.+..+ |+..+ |..=+-.+.+..+++.+.+=-.+.++ +.|+..--. -+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 344455666666555555543 44422 23333344445555555554444444 334433222 2223334444455
Q ss_pred HHHHHH
Q 006012 563 DAIECL 568 (664)
Q Consensus 563 ~A~~~~ 568 (664)
+|+..+
T Consensus 96 eaI~~L 101 (284)
T KOG4642|consen 96 EAIKVL 101 (284)
T ss_pred HHHHHH
Confidence 555443
No 351
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.14 E-value=3e+02 Score=31.84 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006012 195 TYNALISACARNDDLEKALNLMSKMRQD 222 (664)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 222 (664)
-|..|+-.|...|+.++|++++.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4788999999999999999999998763
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.86 E-value=44 Score=25.39 Aligned_cols=47 Identities=6% Similarity=0.008 Sum_probs=34.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHH
Q 006012 522 EQERWEDVKRLLGNMRAQGLLPN--VVTYTTLVDIYGQSGRFDDAIECL 568 (664)
Q Consensus 522 ~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 568 (664)
..++.++|+..|....+.-..+. ..++..++.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888887633322 356777888899999988887763
No 353
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=60.86 E-value=1.2e+02 Score=27.85 Aligned_cols=90 Identities=21% Similarity=0.158 Sum_probs=45.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006012 309 ALSNSGRTIEAEAVFEELKESGLKP----RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAG 384 (664)
Q Consensus 309 ~~~~~g~~~~A~~l~~~m~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 384 (664)
-+.+.|++++|..-|...+..-... ....|..-..++.+.+.++.|+.--...++.+.. .......-..+|-+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 3445566666666665555432111 1223333444555666666666665555554322 2222223344566666
Q ss_pred CHHHHHHHHHHHHhc
Q 006012 385 RWESARIVLKEMEVS 399 (664)
Q Consensus 385 ~~~~A~~l~~~m~~~ 399 (664)
.+++|+.=|+++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 666666666666554
No 354
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=60.78 E-value=66 Score=31.96 Aligned_cols=89 Identities=17% Similarity=0.078 Sum_probs=59.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006012 273 VGFAKAGDASKAMRFLGMAQGVGLSP-KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYL 351 (664)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 351 (664)
+-|.+.|++++|++.|...... .| |.+++..-..+|.+.+++..|..-....+..+-. -...|..-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhH
Confidence 4588999999999999877654 45 8899999999999999988877766665543110 122333333333344566
Q ss_pred HHHHHHHHHHHHC
Q 006012 352 KDAEFVVSEMERS 364 (664)
Q Consensus 352 ~~a~~~~~~m~~~ 364 (664)
++|.+-.+..++.
T Consensus 182 ~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 182 MEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhHHHHHhh
Confidence 6666666665554
No 355
>PHA02875 ankyrin repeat protein; Provisional
Probab=60.65 E-value=1.8e+02 Score=30.38 Aligned_cols=132 Identities=11% Similarity=0.053 Sum_probs=62.4
Q ss_pred HHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHH
Q 006012 251 KLYKEIECDKIELDGQL--LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTA--TYAAVITALSNSGRTIEAEAVFEEL 326 (664)
Q Consensus 251 ~l~~~~~~~~~~~d~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m 326 (664)
.+.+.+.+.|..++... ....+...+..|+.+- .+.+.+.|..|+.. .....+...++.|+.+.+..+++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-- 89 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD-- 89 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH--
Confidence 44455555666555432 2344555666777653 33444555444422 12234556667777766555443
Q ss_pred HHcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHH
Q 006012 327 KESGLKPRTK---AYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHT--YSLLIDAYANAGRWESARIVLK 394 (664)
Q Consensus 327 ~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~l~~ 394 (664)
.|...+.. .-.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 90 --~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 90 --LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred --cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 22211110 0123344445566654 4444455555544321 1233444556677665444443
No 356
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=60.42 E-value=85 Score=24.98 Aligned_cols=43 Identities=9% Similarity=0.157 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 250 QKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQ 292 (664)
Q Consensus 250 ~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~ 292 (664)
++-++.+.....-|+..+..+.+++|-+.+++..|.++|+.++
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4445555555556666666666666666667777777666555
No 357
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=59.85 E-value=15 Score=21.81 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 596 SLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 596 ~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
.+..++.+.|++++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 355566667777777777777765
No 358
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.39 E-value=1.7e+02 Score=28.15 Aligned_cols=85 Identities=18% Similarity=0.328 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHH
Q 006012 480 TLIDCHFKCGRYDRAEELFEEMQER------------GYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ-GLLPNVV 546 (664)
Q Consensus 480 ~li~~~~~~g~~~~A~~~~~~m~~~------------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~ 546 (664)
-|...|...|.+.+..++++++... | .--...|..=|..|....+-.+...++++.+.. .-.|.+.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKG-tQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKG-TQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhcc-chhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 3455566666666666666666432 1 111344555666666666666666666665543 2234444
Q ss_pred HHHHHH----HHHHhcCChHHHH
Q 006012 547 TYTTLV----DIYGQSGRFDDAI 565 (664)
Q Consensus 547 ~~~~li----~~~~~~g~~~~A~ 565 (664)
+...+- .+..+.|++++|-
T Consensus 229 ImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred HHhHHHHcCCccccccchHHHHH
Confidence 433322 1233456666654
No 359
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=59.27 E-value=1.2e+02 Score=26.38 Aligned_cols=51 Identities=14% Similarity=0.129 Sum_probs=28.8
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006012 348 MGYLKDAEFVVSEMERSGVL-PDEHTYSLLIDAYANAGRWESARIVLKEMEVSH 400 (664)
Q Consensus 348 ~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 400 (664)
.++++++..+++.|.-..+. +...++... .+...|++++|.++|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 56667777777766543221 122333322 3556777777777777776543
No 360
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=59.18 E-value=65 Score=32.03 Aligned_cols=53 Identities=17% Similarity=0.043 Sum_probs=33.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 343 KGYVKMGYLKDAEFVVSEMERSGVLP-DEHTYSLLIDAYANAGRWESARIVLKEME 397 (664)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 397 (664)
.-|.+.|.+++|+..+..-... .| |.+++..-..+|.+..++..|..-.....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 3466777777777777665544 23 66666666777777776666655444443
No 361
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=59.04 E-value=2.7e+02 Score=30.24 Aligned_cols=189 Identities=13% Similarity=0.052 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC--CCCHHHHHH
Q 006012 403 PNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI--EPDTITWNT 480 (664)
Q Consensus 403 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ 480 (664)
++..+|..-+.--.+.|+++.+.-+|+...-- +..-...|-..+.-.-..|+.+-|..++.+..+-.+ .|......+
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 34567888888888888888888888876532 122233444444444455888888877776655432 233444444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHH---HHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 481 LIDCHFKCGRYDRAEELFEEMQERGYFPCT-TTYNIMINLLGEQERWEDVKR---LLGNMRAQGLLPNVVTYTTLVDIYG 556 (664)
Q Consensus 481 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~---~~~~m~~~~~~p~~~~~~~li~~~~ 556 (664)
.+. -..|+++.|..+++.+.+.- |+. ..-..-+....+.|+.+.+.. ++..... |- -+..+...+.--++
T Consensus 374 ~f~--e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~-~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 374 RFE--ESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GK-ENNGILEKLYVKFA 447 (577)
T ss_pred HHH--HhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cc-cCcchhHHHHHHHH
Confidence 332 23679999999999998764 433 223333455667788777773 3333222 21 12223333222222
Q ss_pred hcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012 557 QSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQ 605 (664)
Q Consensus 557 ~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 605 (664)
+. ...+.+..+.|..++.++.+. ..++...|..+++.+...+
T Consensus 448 r~------~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 448 RL------RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HH------HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 21 011113333344445555543 3445566777777666555
No 362
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.75 E-value=22 Score=23.52 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012 596 SLINAFGEDQRDAEAFAVLQYMKENG 621 (664)
Q Consensus 596 ~li~~~~~~g~~~~A~~~~~~m~~~g 621 (664)
.|..+|...|+.+.|.+++++.+..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 36778999999999999999988654
No 363
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=58.69 E-value=2.1e+02 Score=28.93 Aligned_cols=65 Identities=9% Similarity=0.070 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 006012 404 NSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEP---DTHFYNVMIDTFGKYNCLHHAMAAFDRMLS 468 (664)
Q Consensus 404 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 468 (664)
...+|..+...+.+.|.++.|...+..+...+... ...+...-...+-..|+-.+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33456666666677777777776666665532111 223333334445555666666666666554
No 364
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=58.61 E-value=21 Score=20.22 Aligned_cols=27 Identities=30% Similarity=0.155 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 593 ALNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
.|..+...+...|++++|...+++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 456677778888888888888887765
No 365
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=58.24 E-value=59 Score=34.79 Aligned_cols=101 Identities=12% Similarity=0.004 Sum_probs=52.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006012 311 SNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESAR 390 (664)
Q Consensus 311 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 390 (664)
...|+...|...+.........-..+....|.....+.|....|..++.+..... ...+.++..+.++|.-..++++|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3456666666666554432111122233345555555566666666665555433 224555666666666667777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHH
Q 006012 391 IVLKEMEVSHAKPNSFIYSRILA 413 (664)
Q Consensus 391 ~l~~~m~~~~~~~~~~~~~~ll~ 413 (664)
+.|++..+.. +.+...-+.+..
T Consensus 697 ~~~~~a~~~~-~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 697 EAFRQALKLT-TKCPECENSLKL 718 (886)
T ss_pred HHHHHHHhcC-CCChhhHHHHHH
Confidence 7776665543 223344444433
No 366
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.91 E-value=66 Score=24.99 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=31.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006012 460 MAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDV 529 (664)
Q Consensus 460 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 529 (664)
.++++.+.+.|+ .+......+-.+-...|+.+.|.++++.+. +| ...|..++.++...|.-+-|
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 344555555543 222223333222224466666666666666 44 23556666666665554444
No 367
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.84 E-value=1.3e+02 Score=26.06 Aligned_cols=59 Identities=19% Similarity=0.423 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 006012 590 SNLALNSLINAFGEDQR-DAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSY 649 (664)
Q Consensus 590 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~ 649 (664)
+...|.+++.+..+..- .--+..+|..|++.+.+++..-|..++.++.+. .+.+-+.+|
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g-~~~~~~~fy 137 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG-YFHDSLYFY 137 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCCcchHHH
Confidence 55678999999977666 566788999999888999999999999999885 555555443
No 368
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=55.73 E-value=1.8e+02 Score=27.21 Aligned_cols=182 Identities=15% Similarity=0.058 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006012 419 GEWQRTFQVLKEMKSSGVEPD-THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEEL 497 (664)
Q Consensus 419 g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 497 (664)
|-+.-|..-|.+.... .|+ +.+||-+.-.+...|+++.|.+.|+...+....-+-...|.-|..| -.|++.-|.+-
T Consensus 79 GL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHH
Confidence 3333344444443332 343 4677888778888888888888888888765433333344333332 36888888877
Q ss_pred HHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHhhhHHH
Q 006012 498 FEEMQERGY-FPCTTTYNIMINLLGEQERWEDVKRLL-GNMRAQGLLPNVVTYTTLVDI-YGQSGRFDDAIECLEGLSDQ 574 (664)
Q Consensus 498 ~~~m~~~~~-~p~~~t~~~ll~~~~~~g~~~~a~~~~-~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~ 574 (664)
|...-..+. .|-...|.-+. .+.-+..+|..-+ ++... .|..-|...|-. |...=..+.+.+- ....
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~l~~~---~~a~ 225 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEETLMER---LKAD 225 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHHHHHH---HHhh
Confidence 776655541 23233333332 2233344444333 33322 243344333322 2211111111111 1110
Q ss_pred HHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 575 AVN--AFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKEN 620 (664)
Q Consensus 575 a~~--~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 620 (664)
|.+ .+-+. =..||--|..-+...|+.++|..+|+-.+..
T Consensus 226 a~~n~~~Ae~-------LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 226 ATDNTSLAEH-------LTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccchHHHHHH-------HHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 000 00000 1247778888889999999999999988764
No 369
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=55.63 E-value=1.4e+02 Score=26.00 Aligned_cols=52 Identities=21% Similarity=0.143 Sum_probs=31.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006012 277 KAGDASKAMRFLGMAQGVGLSPKTA-TYAAVITALSNSGRTIEAEAVFEELKESG 330 (664)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 330 (664)
..++.+++..+++.|.-. .|+.. .-..-...+...|++++|.++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 357777777777766653 34322 12222344567777777777777777653
No 370
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.61 E-value=1.5e+02 Score=28.85 Aligned_cols=56 Identities=11% Similarity=-0.016 Sum_probs=23.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 342 LKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEME 397 (664)
Q Consensus 342 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 397 (664)
|++++..+++.++....-+--+.--+.-......-|-.|.+.+....+.++-....
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44555555555554443333221111122333333444555555555444444443
No 371
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=55.44 E-value=3.4e+02 Score=30.32 Aligned_cols=41 Identities=20% Similarity=0.356 Sum_probs=19.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 006012 199 LISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTR 240 (664)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 240 (664)
+|-.|.|+|++++|.++.++.... +......+...+..+..
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHh
Confidence 444455666666666666443332 23334445555555544
No 372
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=55.33 E-value=27 Score=23.10 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=12.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 006012 481 LIDCHFKCGRYDRAEELFEEMQER 504 (664)
Q Consensus 481 li~~~~~~g~~~~A~~~~~~m~~~ 504 (664)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
No 373
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=54.75 E-value=1.3e+02 Score=25.15 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHH----HHHHhcCCHHHHHHHHHHH
Q 006012 545 VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLI----NAFGEDQRDAEAFAVLQYM 617 (664)
Q Consensus 545 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li----~~~~~~g~~~~A~~~~~~m 617 (664)
...+..|..++...|++++++.. .+.|+.+|++--+ +.-|. ..|...+ .++-..|+.++|++.|+..
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~s----A~~aL~YFNRRGE--L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQS----ADRALRYFNRRGE--LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHH----HHHHHHHHHHH----TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHH----HHHHHHHHhhccc--cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 45566777888999999988764 4567777766444 23333 3454433 5667789999999988754
No 374
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.41 E-value=1.2e+02 Score=24.80 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012 268 LNDVIVGFAKAGDASKAMRFLGMAQG 293 (664)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~ 293 (664)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666777777777777777766654
No 375
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.79 E-value=2.2e+02 Score=27.77 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHH
Q 006012 546 VTYTTLVDIYGQSGRFDDAIECL 568 (664)
Q Consensus 546 ~~~~~li~~~~~~g~~~~A~~~~ 568 (664)
..+..+...|++.++.+.+.+.+
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~ 138 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWM 138 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHH
Confidence 33444444455555555444443
No 376
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.79 E-value=43 Score=27.98 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=28.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhh
Q 006012 529 VKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGL 571 (664)
Q Consensus 529 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 571 (664)
..+-++.+...++.|++.+..+-+.+|.+.+++..|++++++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4444555555666777777777777777777777777766543
No 377
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=52.76 E-value=2e+02 Score=26.90 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 511 TTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 511 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 539 (664)
.||--+.+.+...|+.++|..+|+-.+..
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45666667777777777777777766654
No 378
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.63 E-value=37 Score=24.42 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006012 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQE 503 (664)
Q Consensus 474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 503 (664)
|-...-.+|.+|...|++++|.++.+++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444556666666777776666666543
No 379
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.12 E-value=79 Score=28.97 Aligned_cols=29 Identities=17% Similarity=0.115 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 622 LKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 622 ~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
..|+..+|..++.++...|+.++|.+..+
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~ 168 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLA 168 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45666666666666666666666665555
No 380
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.44 E-value=2.6e+02 Score=27.28 Aligned_cols=123 Identities=16% Similarity=0.118 Sum_probs=66.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCHHHHHH
Q 006012 272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTAT-------YAAVITALSNSGRTIEAEAVFEELKE----SGLKPRTKAYNA 340 (664)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-------~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~p~~~~~~~ 340 (664)
.+-..+.+++++|+..+.++...|+..|..+ ...+...|...|+...-.+......+ ..-+-......+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3445677889999999999888887766544 44566777788877665554433221 111112333444
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012 341 LLKGYVKMG-YLKDAEFVVSEMERSGVLPD-----EHTYSLLIDAYANAGRWESARIVLK 394 (664)
Q Consensus 341 li~~~~~~g-~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~ 394 (664)
|+..+.... .++.-.++.....+...+-+ ...-.-+|..+.+.|.+.+|+.+..
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 555443332 34444444444332211101 1111345666777777777766544
No 381
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.66 E-value=58 Score=21.97 Aligned_cols=35 Identities=11% Similarity=0.239 Sum_probs=26.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006012 202 ACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQ 236 (664)
Q Consensus 202 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 236 (664)
...+.|-..++..++++|.+.|+..+...|..+++
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34567788888888888888888777776666553
No 382
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=47.04 E-value=71 Score=22.17 Aligned_cols=37 Identities=16% Similarity=0.039 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 596 SLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMK 634 (664)
Q Consensus 596 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 634 (664)
.+.-++.+.|++++|.++.+.+++ +.|+-.-...|-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHH
Confidence 455678999999999999999998 7887655444433
No 383
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=46.94 E-value=4.5e+02 Score=29.30 Aligned_cols=61 Identities=8% Similarity=-0.126 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC--CHHHH-----HHHHHHHHhcCCHhHHHHHHHHHHHh
Q 006012 594 LNSLINAFGEDQRDAEAFAVLQYMKEN-GLKP--DVVTY-----TTLMKALIRVDKFHKVFSSYLFFNIY 655 (664)
Q Consensus 594 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p--~~~~~-----~~l~~a~~~~g~~~~A~~~~~~~~~~ 655 (664)
++.|...+. .|+..+..+......+. .-.| ....| ..+.+.+...|+.++|.+..+....+
T Consensus 538 L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 538 LNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 444444444 67777766555443321 1122 23444 23445577889999999988865543
No 384
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=46.68 E-value=3e+02 Score=27.18 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH
Q 006012 475 TITWNTLIDCHFKCGRYDRAEE 496 (664)
Q Consensus 475 ~~~~~~li~~~~~~g~~~~A~~ 496 (664)
...|..|+.++|..|+.+-.+-
T Consensus 321 lK~yaPLL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELELL 342 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHHH
Confidence 4568888888888888776543
No 385
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=46.06 E-value=1.6e+02 Score=23.74 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=28.2
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006012 449 TFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG 505 (664)
Q Consensus 449 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (664)
.+...|++++|..+.+.+ ..||...|-+|-. .+.|..+++..-+.+|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 445566666666555444 2466666655533 25555555555555565555
No 386
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.50 E-value=2.5e+02 Score=25.84 Aligned_cols=22 Identities=5% Similarity=0.066 Sum_probs=10.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 006012 518 NLLGEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 518 ~~~~~~g~~~~a~~~~~~m~~~ 539 (664)
+.+...|+-++|..-|.+.+..
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHc
Confidence 3444444545555444444443
No 387
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.39 E-value=86 Score=21.16 Aligned_cols=34 Identities=9% Similarity=0.138 Sum_probs=27.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 601 FGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMK 634 (664)
Q Consensus 601 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 634 (664)
..+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456888889999999988998888888877665
No 388
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.18 E-value=3.8e+02 Score=27.68 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006012 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQER 504 (664)
Q Consensus 474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (664)
....+..+..-| .+++...+++++++..+
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhccc
Confidence 344444444444 46788888888887654
No 389
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=43.88 E-value=2.8e+02 Score=26.00 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=58.1
Q ss_pred HhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC----C
Q 006012 521 GEQERWEDVKRLLGNMRA----QGLLPN--VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP----S 590 (664)
Q Consensus 521 ~~~g~~~~a~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p----~ 590 (664)
.....+++|.+.+..+.- .+.+|. ..++.-+...|...|+-+..... ...|++.|.+.....-.| +
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~f----l~~Al~~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRF----LRKALEFYEEAYENEDFPIEGMD 163 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHH----HHHHHHHHHHHHHhCcCCCCCch
Confidence 334455555555543332 122333 34455566677777775555444 446777777776553222 2
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012 591 NL-ALNSLINAFGEDQRDAEAFAVLQYMKENG 621 (664)
Q Consensus 591 ~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g 621 (664)
.. ..-.+.....+.|+.++|.++|.++...+
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 22 33355677788999999999999999854
No 390
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=43.84 E-value=1.1e+02 Score=25.69 Aligned_cols=73 Identities=14% Similarity=0.235 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHH
Q 006012 571 LSDQAVNAFRVMRTDGLKPSNL---ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV-VTYTTLMKALIRVDKFHKVF 646 (664)
Q Consensus 571 ~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~a~~~~g~~~~A~ 646 (664)
++++++..|..... .+-|.. .|-.+++.+ ++..++|..|...||--.. ..|......+...|++.+|.
T Consensus 48 lLerc~~~f~~~~~--YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~ 119 (125)
T smart00777 48 LLERCIRYFEDDER--YKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKAD 119 (125)
T ss_pred HHHHHHHHhhhhhh--hcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 34455555655544 344544 444445433 4467789999998876654 56667888888999999999
Q ss_pred HHHHH
Q 006012 647 SSYLF 651 (664)
Q Consensus 647 ~~~~~ 651 (664)
++|++
T Consensus 120 ~iy~~ 124 (125)
T smart00777 120 EVYQL 124 (125)
T ss_pred HHHHc
Confidence 99873
No 391
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=43.41 E-value=2.7e+02 Score=27.54 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=54.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006012 447 IDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERW 526 (664)
Q Consensus 447 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 526 (664)
+....+.+.+......+..+. ....-...+..+...|++..|+++..+..+.- -...-|+.+=..- .++
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~~l~~~~c~~~L~---~~L 173 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL--EELKGYSCVRHLS---SQL 173 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcccchHHHHHh---HHH
Confidence 333444444444444444443 22333445556667788888887777665420 0000111111110 112
Q ss_pred HHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 006012 527 EDVKRLLGNMRAQ-----GLLPNVVTYTTLVDIYGQSGRFDDAIECL 568 (664)
Q Consensus 527 ~~a~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 568 (664)
++......++.+. -..-|+..|..+..+|.-.|+...+.+-+
T Consensus 174 ~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 174 QETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 2222222222211 01358889999999999999887766543
No 392
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=42.82 E-value=3.6e+02 Score=27.12 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=33.7
Q ss_pred HHhcCChHHHHHHHHHHHHc---CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH
Q 006012 310 LSNSGRTIEAEAVFEELKES---GLKPRTKAY--NALLKGYVKMGYLKDAEFVVSEMER-----SGVLPDEH 371 (664)
Q Consensus 310 ~~~~g~~~~A~~l~~~m~~~---~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~ 371 (664)
.-+.++.++|++.++++.+. .-.|+.+.| ....+++...|+++++.+++++..+ .|+.++++
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 33444566666666665542 223454444 3344455566777777777776665 45555443
No 393
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=42.43 E-value=1.9e+02 Score=27.56 Aligned_cols=58 Identities=12% Similarity=0.228 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 006012 375 LLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRD-RGEWQRTFQVLKEMK 432 (664)
Q Consensus 375 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~ 432 (664)
.++..+-+.|+++++...++++...+...+..-.+.+-.+|-. -|....++.++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 3455566667777777777777766666666666666555532 233344444444443
No 394
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.50 E-value=59 Score=23.40 Aligned_cols=23 Identities=13% Similarity=0.080 Sum_probs=10.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 006012 596 SLINAFGEDQRDAEAFAVLQYMK 618 (664)
Q Consensus 596 ~li~~~~~~g~~~~A~~~~~~m~ 618 (664)
.+|.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555444443
No 395
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.36 E-value=3.2e+02 Score=25.96 Aligned_cols=47 Identities=23% Similarity=0.372 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 588 KPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKAL 636 (664)
Q Consensus 588 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~ 636 (664)
.|.+.....++..|. .+++++|.+.+.++.+.|+.|.. +.+++.+++
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 477777777887665 57899999999999999988853 233344444
No 396
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.28 E-value=66 Score=31.59 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=37.6
Q ss_pred CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012 587 LKPSNLA-LNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLM 633 (664)
Q Consensus 587 ~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 633 (664)
+.||..+ |+..|..-.+.|++++|+++++|+++.|+.--..+|..-+
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 4466664 5799999999999999999999999999876666665443
No 397
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=40.74 E-value=6.2e+02 Score=29.13 Aligned_cols=88 Identities=13% Similarity=0.075 Sum_probs=51.7
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHH-------HHHHHH-HHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 006012 381 ANAGRWESARIVLKEMEVSHAKPNSF-------IYSRIL-AGYRDRGEWQRTFQVLKEMKSS----GVEPDTHFYNVMID 448 (664)
Q Consensus 381 ~~~g~~~~A~~l~~~m~~~~~~~~~~-------~~~~ll-~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~li~ 448 (664)
....++.+|..+..+....-..|+.. .|+.+- ......|+++.|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34567777777777665432222211 233222 1224457778888777776542 22345566677777
Q ss_pred HHhccCCHHHHHHHHHHHHH
Q 006012 449 TFGKYNCLHHAMAAFDRMLS 468 (664)
Q Consensus 449 ~~~~~g~~~~A~~~~~~m~~ 468 (664)
+..-.|++++|..+.....+
T Consensus 506 a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred HHHHhchHHHHHHHHHHHHH
Confidence 77778888888887766554
No 398
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=40.53 E-value=3.3e+02 Score=25.94 Aligned_cols=57 Identities=5% Similarity=0.058 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHH
Q 006012 410 RILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK-YNCLHHAMAAFDRM 466 (664)
Q Consensus 410 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m 466 (664)
.++..+-+.++++++...++++...+...+..-.+.+-.+|-. .|....+++++..+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 3455566667777777777777766656666666666555522 23333444444433
No 399
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=40.31 E-value=1.1e+02 Score=33.79 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=13.1
Q ss_pred hhHHHhhcCCCccchhhccCCCC
Q 006012 86 PLLNFLSENSNSESASALASSPS 108 (664)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~~~~~~ 108 (664)
+++..+---|..++|..++...+
T Consensus 153 ~~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 153 DYVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHHHHHTT-HHHHHHHH-TTT
T ss_pred HHHHHHHHcCCHHHHHHHHHhcc
Confidence 45555556777777777774433
No 400
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.30 E-value=49 Score=32.43 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhH
Q 006012 194 LTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINY 231 (664)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 231 (664)
.-||..|....+.|++++|+.++++.++.|+.--..+|
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 45789999999999999999999999999865433333
No 401
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=40.24 E-value=2.5e+02 Score=30.40 Aligned_cols=151 Identities=9% Similarity=0.017 Sum_probs=94.2
Q ss_pred CCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006012 298 PKTATYAAVITALSNSG--RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSL 375 (664)
Q Consensus 298 ~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 375 (664)
|+..+...++.-....- .-+-|-.++..|.. .+.|--...|...-.+...|+...|.+.+.........-..+..-.
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~ 647 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN 647 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH
Confidence 55555554443332221 12334555555543 3344434444433344556888888888877664433223344555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 006012 376 LIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFG 451 (664)
Q Consensus 376 li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 451 (664)
|.....+.|....|-.++.+..... .....++..+.+++.-..++++|++.|++..+.. +.+.+.-+.|...-|
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 6777777888888888888776654 3455677888899999999999999999987764 345566666655444
No 402
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=40.10 E-value=91 Score=19.55 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCHhHHHHH--HHHHHHh
Q 006012 629 YTTLMKALIRVDKFHKVFSS--YLFFNIY 655 (664)
Q Consensus 629 ~~~l~~a~~~~g~~~~A~~~--~~~~~~~ 655 (664)
+..+.-.+...|++++|+.+ |++...+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 44556667777788888877 4455443
No 403
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.79 E-value=4.5e+02 Score=27.21 Aligned_cols=93 Identities=14% Similarity=0.067 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---------CCCCC
Q 006012 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVG--LSPKTATYAAVITALSNSGRTIEAEAVFEELKES---------GLKPR 334 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------~~~p~ 334 (664)
..+..+.+.|..+|+++.|++.|.+....- .+..+..|..+|..-.-.|++........+..+. .+.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 356778889999999999999998865421 1223445667777777778877776666665543 13334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006012 335 TKAYNALLKGYVKMGYLKDAEFVVSE 360 (664)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~a~~~~~~ 360 (664)
..++..|.....+ +++.|.+.|-.
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~ 254 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLL 254 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHh
Confidence 4445444444433 55555555533
No 404
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=39.75 E-value=63 Score=23.56 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012 588 KPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRV 639 (664)
Q Consensus 588 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~ 639 (664)
.|....++.++..+++..-.++++.++.++.+.|. .+..+|..-++.++|.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 46677889999999999999999999999999884 6788888888888774
No 405
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=39.54 E-value=3.3e+02 Score=25.55 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=8.6
Q ss_pred HHHHHHhcCChHHHHHH
Q 006012 551 LVDIYGQSGRFDDAIEC 567 (664)
Q Consensus 551 li~~~~~~g~~~~A~~~ 567 (664)
+.....+.|+.++|.+.
T Consensus 171 igeL~rrlg~~~eA~~~ 187 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRW 187 (214)
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 34444555555555544
No 406
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.52 E-value=7.3e+02 Score=29.62 Aligned_cols=180 Identities=18% Similarity=0.089 Sum_probs=104.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCC---CCC--HHHHHHHHH
Q 006012 199 LISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKI---ELD--GQLLNDVIV 273 (664)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~---~~d--~~~~~~li~ 273 (664)
+..+|...|...+|++.|.+.... +.-+......+....-+... +..|- ++. ...|...++
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg-~ge~~aL~~lv~~~~p~~~s-------------v~dG~t~s~e~t~lhYYlkv~r 991 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSG-FGEGNALRKLVYFLLPKRFS-------------VADGKTPSEELTALHYYLKVVR 991 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhc-cccHHHHHHHHHHhcCCCCc-------------hhcCCCCCchHHHHHHHHHHHH
Confidence 344577889999999999887652 22222111111111100000 01121 222 456788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006012 274 GFAKAGDASKAMRFLGMAQGVGLSPK----TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMG 349 (664)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 349 (664)
.+-+.+-.+.+.++-..+.+. ++++ ..+++.+.+-....|.+.+|...+-.-... .....+...++..++.+|
T Consensus 992 lle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg 1068 (1480)
T KOG4521|consen 992 LLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECG 1068 (1480)
T ss_pred HHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhcc
Confidence 899999999999987777653 1222 446777888888888887777665432211 112345666777777777
Q ss_pred CHH------------HHHH-HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006012 350 YLK------------DAEF-VVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKE 395 (664)
Q Consensus 350 ~~~------------~a~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 395 (664)
.++ +... +++..-+.........|+.|-..+...+++.+|-.++-+
T Consensus 1069 ~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1069 ELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred chHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence 654 3333 333333333333445677777777888888877655433
No 407
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.33 E-value=28 Score=29.44 Aligned_cols=33 Identities=30% Similarity=0.522 Sum_probs=24.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012 601 FGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKA 635 (664)
Q Consensus 601 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a 635 (664)
....|...+|..+|++|++.|-+|| .|+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3445777889999999999998887 35566554
No 408
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=38.61 E-value=1e+03 Score=31.03 Aligned_cols=152 Identities=9% Similarity=0.020 Sum_probs=91.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006012 270 DVIVGFAKAGDASKAMRFLGMAQGVGLS--PKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK 347 (664)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 347 (664)
.+..+-.+++.+.+|+..++.-.....+ ....-|-.+...|...++++...-+...-.. +. ....-|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~-sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DP-SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Cc-cHHHHHHHHHh
Confidence 3445667889999999998873111111 1122344444588999999888777764211 11 22334556678
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHH
Q 006012 348 MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYS-RILAGYRDRGEWQRTFQ 426 (664)
Q Consensus 348 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~ 426 (664)
.|+++.|...|+.+.+.+.. ....++-++......|.++.++-..+-..... .+....++ .-+.+-=+.++|+....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 89999999999999987532 35566666666666777777766555554332 22222222 22333355667766665
Q ss_pred HHH
Q 006012 427 VLK 429 (664)
Q Consensus 427 ~~~ 429 (664)
...
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 544
No 409
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=37.30 E-value=4.3e+02 Score=26.30 Aligned_cols=30 Identities=13% Similarity=0.007 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 404 NSFIYSRILAGYRDRGEWQRTFQVLKEMKS 433 (664)
Q Consensus 404 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 433 (664)
+......++.+.+...+.+...++++....
T Consensus 200 ~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 200 SPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp THHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 344444455555555555544455554444
No 410
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=36.17 E-value=1.4e+02 Score=32.95 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006012 193 PLTYNALISACARNDDLEKALNLMSK 218 (664)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (664)
+.-|+ .+..+.-.|++++|.+++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 55565 45556666666666666633
No 411
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.06 E-value=37 Score=28.74 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=18.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012 488 CGRYDRAEELFEEMQERGYFPCTTTYNIMINL 519 (664)
Q Consensus 488 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 519 (664)
.|.-..|..+|+.|+++|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3555566677777777766655 35555543
No 412
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.59 E-value=4e+02 Score=25.13 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHH--HHHHHHHhcCChHHHHHHHHHHHH
Q 006012 261 IELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSP---KTATYA--AVITALSNSGRTIEAEAVFEELKE 328 (664)
Q Consensus 261 ~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~ 328 (664)
+.++..-+|.||--|.-...+.+|.+.|..- .|+.+ |..+++ .-|....+.|++++|.+....+-.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P 92 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP 92 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh
Confidence 3455555666666666666666666666432 23333 333332 345566777777777777766543
No 413
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.49 E-value=2.4e+02 Score=30.98 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHH
Q 006012 480 TLIDCHFKCGRYDRAEELFEEMQER--GYFPCTTTYNIMINLLGEQERWE 527 (664)
Q Consensus 480 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~g~~~ 527 (664)
.|+.+|..+|++..+..+++.+... |-+.-...||..++...+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 5677777777777777777776654 22223445666666666666554
No 414
>COG0819 TenA Putative transcription activator [Transcription]
Probab=34.45 E-value=4e+02 Score=25.07 Aligned_cols=105 Identities=13% Similarity=0.133 Sum_probs=49.1
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012 538 AQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYM 617 (664)
Q Consensus 538 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 617 (664)
+....|....|...+-..+..|++.+..-.+--..---.++..++...+..+....|...++.|... .+.++.+.+...
T Consensus 102 ~~~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~-ef~~~v~~~~~~ 180 (218)
T COG0819 102 KTEPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASE-EFQEAVEELEAL 180 (218)
T ss_pred hcCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCH-HHHHHHHHHHHH
Confidence 3344455566666666666666655554433211111122233333333323445688888888542 344444433333
Q ss_pred HH-CCCCCCHHHHHHHHHHHHhcCCHh
Q 006012 618 KE-NGLKPDVVTYTTLMKALIRVDKFH 643 (664)
Q Consensus 618 ~~-~g~~p~~~~~~~l~~a~~~~g~~~ 643 (664)
++ .+-.-+..-+..|...+...-+++
T Consensus 181 ld~~~~~~~~~~~~~l~~iF~~ss~~E 207 (218)
T COG0819 181 LDSLAENSSEEELEKLKQIFLTASRFE 207 (218)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 32 222233444455555555544443
No 415
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=34.11 E-value=4.1e+02 Score=26.50 Aligned_cols=119 Identities=15% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006012 281 ASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSE 360 (664)
Q Consensus 281 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 360 (664)
..+|.++|+...+.| =..|.+..+...--...+.+.+++...-...-..|..+..+.|++.+|.+.++.
T Consensus 232 i~~AE~l~k~ALka~-----------e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 232 IVDAERLFKQALKAG-----------ETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 006012 361 MERSGVLPD-EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSR 410 (664)
Q Consensus 361 m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ 410 (664)
+.+.-.-.+ ......|+.++....-+..+..++.+..+...+.+......
T Consensus 301 L~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYT 351 (556)
T KOG3807|consen 301 LMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYT 351 (556)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHH
No 416
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=34.10 E-value=2e+02 Score=26.23 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 333 PRTKAYNALLKGYVKMGYLKDAEFVVSEME 362 (664)
Q Consensus 333 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 362 (664)
|+..+|..++..+...|+.++|.++.+++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 417
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.97 E-value=5.5e+02 Score=26.57 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=27.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 006012 486 FKCGRYDRAEELFEEMQERGYFPCTT--TYNIMINLLG--EQERWEDVKRLLGNMRA 538 (664)
Q Consensus 486 ~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~--~~g~~~~a~~~~~~m~~ 538 (664)
.+.+++..|.++|+++..+ ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3566666677666666665 333333 2333333333 23455666666666554
No 418
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=33.87 E-value=2.8e+02 Score=23.18 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006012 192 TPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDV 271 (664)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~l 271 (664)
|..++..|-.++.+.|++++++.--++... -+.+.|.+.....+.....+. +-
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~---------------YFNRRGEL~qdeGklWIaaVf------------sr 106 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALR---------------YFNRRGELHQDEGKLWIAAVF------------SR 106 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH---------------HHHHH--TTSTHHHHHHHHHH------------HH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHH---------------HHhhccccccccchhHHHHHH------------HH
Confidence 345777888889999999888876655433 234444443322211111111 11
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 006012 272 IVGFAKAGDASKAMRFLGMA 291 (664)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~ 291 (664)
..++-..|+.++|+..|++.
T Consensus 107 a~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHH
Confidence 22455678888888888754
No 419
>PLN03025 replication factor C subunit; Provisional
Probab=33.54 E-value=5e+02 Score=25.98 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 589 PSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKAL 636 (664)
Q Consensus 589 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~ 636 (664)
+.......++.++. .+++++|...+.+|...|+.|.. ++..+...+
T Consensus 223 ~~~~~i~~~i~~~~-~~~~~~a~~~l~~ll~~g~~~~~-Il~~l~~~~ 268 (319)
T PLN03025 223 PHPLHVKNIVRNCL-KGKFDDACDGLKQLYDLGYSPTD-IITTLFRVV 268 (319)
T ss_pred CCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 34444555666554 57899999999999988877753 333334433
No 420
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=32.71 E-value=5.5e+02 Score=27.78 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 374 SLLIDAYANAGRWESARIVLKEME 397 (664)
Q Consensus 374 ~~li~~~~~~g~~~~A~~l~~~m~ 397 (664)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 346677888888888888887774
No 421
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.67 E-value=5.8e+02 Score=26.41 Aligned_cols=58 Identities=7% Similarity=0.035 Sum_probs=38.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 006012 200 ISACARNDDLEKALNLMSKMRQDGYHCDFI--NYSLVIQSLTRTNKIDSSLLQKLYKEIEC 258 (664)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~~~~~~l~~~~~~ 258 (664)
+..+.+.+++..|.++|+.+.+. ++++.. .+..+..+|..-..++...|...++....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33455889999999999999987 555544 34455555655566666666666665544
No 422
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.54 E-value=4.7e+02 Score=25.33 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=87.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCC--CCHHHHHHHHHHHHHc
Q 006012 312 NSGRTIEAEAVFEELKESGLKPRT---KAYNALLKGYVKMGYLKDAEFVVSEMER---SGVL--PDEHTYSLLIDAYANA 383 (664)
Q Consensus 312 ~~g~~~~A~~l~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~--~~~~~~~~li~~~~~~ 383 (664)
+...+++|+.-|++..+....-.. .....+|..+.+.+++++....+.+|.. ..+. -+..+.|++++.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 455788899999888774322223 3445667788888899888888888753 1111 2345566777766666
Q ss_pred CCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CC-------CHHHHHHHH
Q 006012 384 GRWESARIVLKEMEVS-----HAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGV----EP-------DTHFYNVMI 447 (664)
Q Consensus 384 g~~~~A~~l~~~m~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~----~~-------~~~~~~~li 447 (664)
.+.+-..+.|+.-... +-..--.|-+.+...|...+++.+..++++++.+..- .. -...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6666555555543211 1111112334566667777777777777766654311 01 123444445
Q ss_pred HHHhccCCHHHHHHHHHHHH
Q 006012 448 DTFGKYNCLHHAMAAFDRML 467 (664)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~m~ 467 (664)
.+|....+-.....++++.+
T Consensus 199 QmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhhcccHHHHHHHHHHH
Confidence 55555555555555555443
No 423
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=32.17 E-value=2e+02 Score=23.39 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=17.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 269 NDVIVGFAKAGDASKAMRFLGMAQ 292 (664)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~ 292 (664)
..++.-|...|+.++|.+.+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 456667778889998888887753
No 424
>PRK10941 hypothetical protein; Provisional
Probab=32.02 E-value=4.9e+02 Score=25.40 Aligned_cols=60 Identities=10% Similarity=-0.118 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 479 NTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 479 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 539 (664)
+.+-.+|.+.++++.|+++.+.+..-. +.+..-+.--.-.|.+.|.+..|..=++..++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 344556666677777777777666654 344444554455566667766666666666544
No 425
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.71 E-value=2.2e+02 Score=24.74 Aligned_cols=62 Identities=13% Similarity=0.121 Sum_probs=32.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006012 357 VVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG 419 (664)
Q Consensus 357 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g 419 (664)
+.+.+.+.|.+++. --..++..+...++.-.|.++++++.+.+...+..|....+..+...|
T Consensus 8 ~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444555555332 334455555656555666666666666655555555444444444443
No 426
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.02 E-value=2.8e+02 Score=24.04 Aligned_cols=59 Identities=24% Similarity=0.269 Sum_probs=28.6
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012 465 RMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE 524 (664)
Q Consensus 465 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 524 (664)
.+.+.|++++.. -..++..+.+.+..-.|.++++++.+.+...+..|...-++.+...|
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334444443322 23344455555555666666666666554444444444444444443
No 427
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=30.83 E-value=6e+02 Score=26.06 Aligned_cols=124 Identities=10% Similarity=0.016 Sum_probs=80.4
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-------hcCCCChHHHHHHHHHHHh
Q 006012 186 SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLT-------RTNKIDSSLLQKLYKEIEC 258 (664)
Q Consensus 186 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~~~~~~~~l~~~~~~ 258 (664)
....+-.+.++..+-..+.++|+.+.|.++.++..- ++...+.... ..|... ..
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf--------~~e~~~~~~F~~~~~~~~~g~~r-----------L~ 93 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF--------AFERAFHPSFSPFRSNLTSGNCR-----------LD 93 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHHHHHHhhhhhcccccCccc-----------cC
Confidence 344566778888899999999999999999888652 1211111110 011000 00
Q ss_pred CCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHH
Q 006012 259 DKIELDGQLLNDV---IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALS-NSGRTIEAEAVFEELKE 328 (664)
Q Consensus 259 ~~~~~d~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~ 328 (664)
-...-|...|-++ |....+.|-+..|+++.+.+...+..-|.......|+.|+ +.++++--+++++....
T Consensus 94 ~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 94 YRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred CccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 0112344455444 4567889999999999999998775547777777777664 67788888888877654
No 428
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.61 E-value=3.2e+02 Score=30.11 Aligned_cols=91 Identities=12% Similarity=0.081 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChH------HHHHHHHHHHHcCCCCCHHHHHHH
Q 006012 270 DVIVGFAKAGDASKAMRFLGMAQGVG--LSPKTATYAAVITALSNSGRTI------EAEAVFEELKESGLKPRTKAYNAL 341 (664)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~------~A~~l~~~m~~~~~~p~~~~~~~l 341 (664)
+|+.+|...|++-.+.++++...... -+.=...||..|+...+.|.++ .|.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 89999999999999999999887543 2233567899999999999764 3344444333 45578888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 006012 342 LKGYVKMGYLKDAEFVVSEMER 363 (664)
Q Consensus 342 i~~~~~~g~~~~a~~~~~~m~~ 363 (664)
+.+-...-+-....-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7766554333444445555544
No 429
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=30.27 E-value=6.6e+02 Score=26.36 Aligned_cols=56 Identities=9% Similarity=0.088 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 594 LNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 594 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
...|+.-|.-.|+..+|.+.++++-- .+......+.+++.+..+.|+-...+.+++
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk 567 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMVMEKKGDSTMILDLLK 567 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 45678889999999999999887621 222345788899999999998765555555
No 430
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.76 E-value=97 Score=22.61 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012 473 PDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE 522 (664)
Q Consensus 473 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 522 (664)
|....++.++..+++-.-.++++..+.++.++| ..+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344455666666666556666666666666665 2445555555555444
No 431
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=29.59 E-value=3.7e+02 Score=24.45 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=14.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006012 341 LLKGYVKMGYLKDAEFVVSEMER 363 (664)
Q Consensus 341 li~~~~~~g~~~~a~~~~~~m~~ 363 (664)
.+..|.+.|.+++|.+++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34456666677777776666655
No 432
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=28.50 E-value=7.3e+02 Score=26.29 Aligned_cols=119 Identities=13% Similarity=0.169 Sum_probs=57.2
Q ss_pred hcCCHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012 347 KMGYLKDAEF-VVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTF 425 (664)
Q Consensus 347 ~~g~~~~a~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 425 (664)
..|++-.|-+ ++..+....-.|+.....+. .+...|+++.+...+...... +.....+...+++...+.|+++.|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 3455444433 33333333223443333332 244556666666665544322 2334455566666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 006012 426 QVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE 469 (664)
Q Consensus 426 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 469 (664)
..-.-|....++ +...........-..|-++++.-.|.++...
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 666666554432 2222222222223345566666666665543
No 433
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=28.10 E-value=6.1e+02 Score=27.43 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=10.3
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 006012 306 VITALSNSGRTIEAEAVFEEL 326 (664)
Q Consensus 306 li~~~~~~g~~~~A~~l~~~m 326 (664)
++.-|.+.+++++|..++..|
T Consensus 414 L~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhC
Confidence 444455555555555554444
No 434
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=28.09 E-value=3.4e+02 Score=22.24 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006012 472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG 505 (664)
Q Consensus 472 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (664)
.||...|-+|-. .+.|..+++...+.++..+|
T Consensus 68 ~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 68 YPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp -GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred CccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 355555544432 34555555555555554444
No 435
>PRK10941 hypothetical protein; Provisional
Probab=27.84 E-value=5.8e+02 Score=24.91 Aligned_cols=60 Identities=7% Similarity=-0.078 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006012 269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES 329 (664)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 329 (664)
+.+-.+|.+.++++.|+++.+.+.... +.+..-+.--.-.|.+.|.+..|..=++..++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 455567777788888888777777653 334555666666777777777777777766553
No 436
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=27.79 E-value=2.1e+02 Score=29.76 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 546 VTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYMK 618 (664)
Q Consensus 546 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 618 (664)
.....|++..+-.|++..|+++++..--.-..+|.+ +.+ ...+|-.+.-+|...+++.+|++.|....
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~-----V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTK-----VPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhcc-----CcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677778888888888765221100011111 111 22367778888888899999998887765
No 437
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=27.58 E-value=1e+03 Score=27.76 Aligned_cols=66 Identities=11% Similarity=-0.064 Sum_probs=46.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCH
Q 006012 577 NAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE-NGLKPDVVTYTTLMKALIRVDKF 642 (664)
Q Consensus 577 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~a~~~~g~~ 642 (664)
+.|.++..---.-|..+|..-..-....|++..|.+++.++.+ .|-.++...|..++..+...|.-
T Consensus 1217 e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1217 ENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred HHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 3344444321123556676666777788999999999999887 56677888888888888888764
No 438
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=27.24 E-value=5.8e+02 Score=24.71 Aligned_cols=102 Identities=14% Similarity=0.062 Sum_probs=45.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012 277 KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELK----ESGLKPRTKAYNALLKGYVKMGYLK 352 (664)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~~~~p~~~~~~~li~~~~~~g~~~ 352 (664)
+.+++++|++++..- ...+.+.|+...|-++-..|+ +.+.+.|......++..+...+.-+
T Consensus 2 ~~kky~eAidLL~~G---------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG---------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHH---------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 456777777765432 123445555554444433332 3455555555555555554443211
Q ss_pred -HHHHHHHHHHH---CC--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006012 353 -DAEFVVSEMER---SG--VLPDEHTYSLLIDAYANAGRWESARIVL 393 (664)
Q Consensus 353 -~a~~~~~~m~~---~g--~~~~~~~~~~li~~~~~~g~~~~A~~l~ 393 (664)
+-.++.+.+.+ .| ..-|+.....+...|.+.|++.+|...|
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 12222222221 11 1235566666777777777777666554
No 439
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=26.80 E-value=5.5e+02 Score=25.98 Aligned_cols=79 Identities=10% Similarity=0.081 Sum_probs=0.0
Q ss_pred hHHHHHHHh--hhHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 561 FDDAIECLE--GLSDQAVNAFRVMRTDGLKPSNL----ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMK 634 (664)
Q Consensus 561 ~~~A~~~~~--~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 634 (664)
+.+++.+++ --.++...++..+... .|+.. -|.+++......|.+++++.+|++++..|-.|-...-..+++
T Consensus 106 lsECl~Li~eGcp~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~d 183 (353)
T PF15297_consen 106 LSECLNLIEEGCPKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVD 183 (353)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q ss_pred HHHhcCC
Q 006012 635 ALIRVDK 641 (664)
Q Consensus 635 a~~~~g~ 641 (664)
.+-..+.
T Consensus 184 iL~~k~~ 190 (353)
T PF15297_consen 184 ILKMKSQ 190 (353)
T ss_pred HHHhhhh
No 440
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.79 E-value=8.1e+02 Score=26.26 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012 593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVD 640 (664)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g 640 (664)
....++.+. ..++++.|+.++.+|...|..|....-..+..++-..|
T Consensus 246 ~i~~li~si-~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~ 292 (472)
T PRK14962 246 VVRDYINAI-FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE 292 (472)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 334445544 35788888888888887777666554444444444444
No 441
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.78 E-value=3e+02 Score=26.40 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=13.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 006012 375 LLIDAYANAGRWESARIVLKEM 396 (664)
Q Consensus 375 ~li~~~~~~g~~~~A~~l~~~m 396 (664)
.+...|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3455566666666666666665
No 442
>KOG2500 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.46 E-value=91 Score=28.82 Aligned_cols=8 Identities=63% Similarity=1.107 Sum_probs=4.0
Q ss_pred cCCCCCCC
Q 006012 3 LLPPQPLS 10 (664)
Q Consensus 3 ~~~~~~~~ 10 (664)
|+||||-.
T Consensus 186 llPPPpgg 193 (253)
T KOG2500|consen 186 LLPPPPGG 193 (253)
T ss_pred ccCCCCCC
Confidence 45555544
No 443
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=25.90 E-value=3.5e+02 Score=26.77 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=35.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012 495 EELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQ 557 (664)
Q Consensus 495 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 557 (664)
.++|+.|.+.++.|.-..+..+.-.+.+.=.+..+..+|+.+.. |+.-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 45666666666677666666666666666666667777776654 33335555555554
No 444
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=25.66 E-value=2.3e+02 Score=19.61 Aligned_cols=32 Identities=16% Similarity=-0.003 Sum_probs=24.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhh
Q 006012 197 NALISACARNDDLEKALNLMSKMRQDGYHCDFIN 230 (664)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 230 (664)
.-+.-++.+.|++++|....+.+.+. .|+..-
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Q 36 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEI--EPDNRQ 36 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHH
Confidence 34566789999999999999999986 576543
No 445
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=25.48 E-value=3.3e+02 Score=21.31 Aligned_cols=57 Identities=21% Similarity=0.241 Sum_probs=36.8
Q ss_pred HhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 556 GQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS----NLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 556 ~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
.+.|++..|.+.+... |+.....+.... ......+.......|++++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~-------fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRY-------FDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHH-------HHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678888887766543 333333332221 12334456677788999999999999886
No 446
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.44 E-value=7.7e+02 Score=25.18 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=10.4
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 006012 416 RDRGEWQRTFQVLKEMKS 433 (664)
Q Consensus 416 ~~~g~~~~a~~~~~~m~~ 433 (664)
...++++.|+.++.....
T Consensus 194 iglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 194 IGLKRFERALYLLEICVT 211 (422)
T ss_pred eccccHHHHHHHHHHHHh
Confidence 344566666666666553
No 447
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=24.38 E-value=3.5e+02 Score=21.18 Aligned_cols=20 Identities=25% Similarity=0.639 Sum_probs=13.6
Q ss_pred HHHHHHHhcCChHHHHHHHh
Q 006012 550 TLVDIYGQSGRFDDAIECLE 569 (664)
Q Consensus 550 ~li~~~~~~g~~~~A~~~~~ 569 (664)
.+.......|++++|...++
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~ 65 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALE 65 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHH
Confidence 34555667788888877765
No 448
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.28 E-value=1.1e+03 Score=27.11 Aligned_cols=51 Identities=16% Similarity=0.224 Sum_probs=36.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006012 271 VIVGFAKAGDASKAMRFLGMAQGVGLSPKT--ATYAAVITALSNSGRTIEAEAVFEELK 327 (664)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~ 327 (664)
+-..|...|++++|++.-+. .|+. ..+..-.+.|.+.+++..|.++|.++.
T Consensus 364 vWk~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 44567788999999887543 2332 234445567888889999999998874
No 449
>COG4734 ArdA Antirestriction protein [General function prediction only]
Probab=24.26 E-value=31 Score=29.95 Aligned_cols=12 Identities=42% Similarity=1.054 Sum_probs=11.0
Q ss_pred CCCCCccccccc
Q 006012 10 SVRFPAIHSACP 21 (664)
Q Consensus 10 ~~~~~~~~~~~~ 21 (664)
.+|||+|.++||
T Consensus 40 ~srfPnvmVkCp 51 (193)
T COG4734 40 DSRFPNVMVKCP 51 (193)
T ss_pred hhcCccceeecc
Confidence 479999999999
No 450
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=24.08 E-value=1.4e+02 Score=22.73 Aligned_cols=6 Identities=17% Similarity=0.385 Sum_probs=2.2
Q ss_pred HHHCCC
Q 006012 361 MERSGV 366 (664)
Q Consensus 361 m~~~g~ 366 (664)
+.+.|.
T Consensus 78 Ll~~g~ 83 (89)
T PF12796_consen 78 LLEHGA 83 (89)
T ss_dssp HHHTTT
T ss_pred HHHcCC
Confidence 333333
No 451
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.01 E-value=3.4e+02 Score=26.02 Aligned_cols=19 Identities=5% Similarity=0.179 Sum_probs=8.6
Q ss_pred HHHhccCCHHHHHHHHHHH
Q 006012 448 DTFGKYNCLHHAMAAFDRM 466 (664)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~m 466 (664)
.-|.+.|++++|.++|+.+
T Consensus 186 ~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444
No 452
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.79 E-value=6.4e+02 Score=24.05 Aligned_cols=19 Identities=5% Similarity=0.204 Sum_probs=10.1
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 006012 521 GEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 521 ~~~g~~~~a~~~~~~m~~~ 539 (664)
+..+++.+|.++|++....
T Consensus 165 a~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544
No 453
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=23.77 E-value=2.8e+02 Score=23.69 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006012 589 PSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLK 623 (664)
Q Consensus 589 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 623 (664)
+|.+....+++ +...|+++.|+.+.+.+++.|+.
T Consensus 47 qd~Vl~~~mvW-~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 47 QDDVLMTVMVW-LFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred cCchHHhhHhh-hhcccCHHHHHHHHHHHHHcCCC
Confidence 56666667777 55789999999999999998753
No 454
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=23.61 E-value=4.4e+02 Score=26.17 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----------cCCHHHH
Q 006012 320 EAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN----------AGRWESA 389 (664)
Q Consensus 320 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----------~g~~~~A 389 (664)
.++++.|.+.++.|.-..+.-+.-.+.+.=.+.+...+|+.+.. |..-|..|+..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 56677777777777766666666666666667777777777765 22335555555543 4777777
Q ss_pred HHHHHHH
Q 006012 390 RIVLKEM 396 (664)
Q Consensus 390 ~~l~~~m 396 (664)
.++++.-
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 7766543
No 455
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=23.42 E-value=1.3e+03 Score=27.33 Aligned_cols=244 Identities=9% Similarity=0.008 Sum_probs=123.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012 297 SPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLL 376 (664)
Q Consensus 297 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 376 (664)
.+|...-...+..+.+.+..+ +...+..+.+. ++...-...+.++.+.+........+..+.+. +|..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 466666666667776666533 44444444432 24333344444444443211122233333332 455555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 006012 377 IDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCL 456 (664)
Q Consensus 377 i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 456 (664)
+..+...+..+ ...+.. ... .++...-...+.++.+.+..+.. ..+.. .++..+-.....++...+..
T Consensus 705 ~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~l----~~~l~---D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVESV----AGAAT---DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHHH----HHHhc---CCCHHHHHHHHHHHHHhccc
Confidence 66655443211 112222 221 35556666666666665543321 12221 45666666666677666654
Q ss_pred HH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006012 457 HH-AMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGN 535 (664)
Q Consensus 457 ~~-A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 535 (664)
+. +...+..+.+ .++...-...+.++.+.|..+.+...+..+.+. ++...-...+.++...+. +++...+..
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 32 2344444443 356666777777777777765554444444443 344555556666666665 345455555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012 536 MRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE 569 (664)
Q Consensus 536 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (664)
+.+ .|+..+-...+.++.+......+...+.
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~ 876 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALT 876 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 553 3566666666777766532334444443
No 456
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=23.29 E-value=4.9e+02 Score=22.44 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 298 PKTATYAAVITALSNSGR---TIEAEAVFEELKESG-LKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERS 364 (664)
Q Consensus 298 ~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 364 (664)
++..+--.+..++.+..+ ..+.+.+++++.+.. ..-+.....-|.-++.+.++++.+.++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 444444455555555543 344555666665411 1112223333445566666666666666666554
No 457
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=23.17 E-value=7.8e+02 Score=24.76 Aligned_cols=36 Identities=14% Similarity=0.030 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHH
Q 006012 477 TWNTLIDCHFKCGRYDRAEELFEEMQER----GYFPCTTT 512 (664)
Q Consensus 477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~t 512 (664)
.+-....-||+.|+-+.|++.+++..++ |.+.|+.-
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf 145 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVF 145 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHH
Confidence 4445555677777777777666655433 44444443
No 458
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=23.16 E-value=5.9e+02 Score=23.39 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH-HHHhcCChHHHHHHH
Q 006012 492 DRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ--GLLPNVVTYTTLVD-IYGQSGRFDDAIECL 568 (664)
Q Consensus 492 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~-~~~~~g~~~~A~~~~ 568 (664)
++++++-+++.. +....-...+.|++++|.+-++++.+. .++--...|..+.. +++..+.-+-+....
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHH--------------hcCCHHHHHHHHHHHHH
Q 006012 569 EGLSDQAVNAFRVMRTDGLKPSNL----ALNSLINAFG--------------EDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 569 ~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~--------------~~g~~~~A~~~~~~m~~ 619 (664)
|......+..|+.. .+...+.+.+ +.|+++.|.++++-|..
T Consensus 91 ----------l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 91 ----------LYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred ----------HHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 459
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=22.98 E-value=4.9e+02 Score=22.40 Aligned_cols=74 Identities=9% Similarity=0.002 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 542 LPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTD-GLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKEN 620 (664)
Q Consensus 542 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 620 (664)
.++..+-..+..++.+..+.++.. +.+.++..+.+. ...-+.....-|.-++.+.++++++.++.+.+.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~--------~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~- 99 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQ--------EGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE- 99 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHH--------HhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh-
Confidence 456666677777887777665543 344455666542 1111223344566778899999999999999988
Q ss_pred CCCCC
Q 006012 621 GLKPD 625 (664)
Q Consensus 621 g~~p~ 625 (664)
.+||
T Consensus 100 -~e~~ 103 (149)
T KOG3364|consen 100 -TEPN 103 (149)
T ss_pred -hCCC
Confidence 4565
No 460
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=22.86 E-value=7.6e+02 Score=24.54 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhcCChHH
Q 006012 547 TYTTLVDIYGQSGRFDD 563 (664)
Q Consensus 547 ~~~~li~~~~~~g~~~~ 563 (664)
+|..|+.+++..|+.+-
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 34445555555554443
No 461
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=22.82 E-value=4.7e+02 Score=24.18 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHH
Q 006012 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTA-TYAAVITALSNSGRTIEAEAVFEEL 326 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m 326 (664)
...+.++..+...|+++.|.++|..+.+.. +.|.. .|..=+..+.+.+.-....+.++.|
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 455778888889999999999999888753 33433 3555555555555544444444443
No 462
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.78 E-value=4.5e+02 Score=23.47 Aligned_cols=59 Identities=12% Similarity=-0.046 Sum_probs=33.5
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006012 467 LSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERW 526 (664)
Q Consensus 467 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 526 (664)
.+.|+..+..- ..++..+...++.-.|.++++.+.+.+..++..|...-++.+...|-+
T Consensus 18 ~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34455444332 234444444555666777777777766566666666666666665543
No 463
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.46 E-value=9e+02 Score=25.25 Aligned_cols=62 Identities=21% Similarity=0.123 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--CC----CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006012 266 QLLNDVIVGFAKAGDASKAMRFLGMAQG--VG----LS-PKTATYAAVITALSNSGRTIEAEAVFEELK 327 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~g----~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 327 (664)
++.-.|++.++-.||+..|+++++.+.- .+ ++ -.+.++-.+.-+|...+|+.+|.+.|....
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678889999999999999875531 11 12 235567778888999999999999998865
No 464
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=21.88 E-value=3.3e+02 Score=22.35 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=14.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCC
Q 006012 447 IDTFGKYNCLHHAMAAFDRMLSEG 470 (664)
Q Consensus 447 i~~~~~~g~~~~A~~~~~~m~~~g 470 (664)
++.+.+|...++|+++.+.|.+.|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 444555566666666666666655
No 465
>PRK09857 putative transposase; Provisional
Probab=21.50 E-value=7.3e+02 Score=24.56 Aligned_cols=61 Identities=11% Similarity=0.021 Sum_probs=25.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006012 445 VMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY 506 (664)
Q Consensus 445 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 506 (664)
.++....+.++.++..++++.+.+.. +.......++..-+.+.|.-+++.++.++|...|+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33333334444444445554444331 11222222333444444444445555555555554
No 466
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.33 E-value=4.3e+02 Score=22.85 Aligned_cols=62 Identities=11% Similarity=0.154 Sum_probs=42.4
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 006012 581 VMRTDGLKPSNLALNSLINAFGED-QRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFH 643 (664)
Q Consensus 581 ~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~ 643 (664)
.+...|++++..= ..++..+... +..-.|.++++++.+.+...+..|...-++.+...|-..
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3556677765542 2344445443 467789999999998877778887777778888877654
No 467
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=21.30 E-value=4e+02 Score=23.80 Aligned_cols=44 Identities=14% Similarity=0.033 Sum_probs=19.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006012 376 LIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG 419 (664)
Q Consensus 376 li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g 419 (664)
++..+...++.-.|.++++.+.+.+...+..|....|..+.+.|
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33333333444455555555555544444444444444444433
No 468
>PRK12356 glutaminase; Reviewed
Probab=21.28 E-value=5.3e+02 Score=25.87 Aligned_cols=152 Identities=13% Similarity=0.195 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012 470 GIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYT 549 (664)
Q Consensus 470 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 549 (664)
|.+|+-..||.++..-...|++ .+-|+..| ..+...++.+-....+++...++++++....+..|..+|.
T Consensus 93 G~EPSG~~FNsi~~Le~~~g~P------~NPmINAG----AI~~~sll~g~~~~~~~~~il~~~~~~ag~~l~~de~v~~ 162 (319)
T PRK12356 93 GADPTGLPFNSVIAIELHGGKP------LNPLVNAG----AIATTSLVPGANSDERWQRILDGQQRFAGRELALSDEVYQ 162 (319)
T ss_pred CCCCCCCCcchHHHhhccCCCC------CCccccHH----HHHHHHhccCCChHHHHHHHHHHHHHHhCCCCccCHHHHH
Q ss_pred HHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---
Q 006012 550 TLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL--ALNSLINAFGEDQRDAEAFAVLQYMKENGLKP--- 624 (664)
Q Consensus 550 ~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--- 624 (664)
+ =...|+-..|+..+ |+..|.-++.. +.......|+-....++.-.+.--+...|+.|
T Consensus 163 S----E~~t~~RNrAlA~~-------------lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn~G~~P~tg 225 (319)
T PRK12356 163 S----EQTTNFHNRAIAWL-------------LYSYGRLYCDPMEACDVYTRQCSTLVTARDLATMGATLAAGGVNPLTG 225 (319)
T ss_pred H----HHhhhHHHHHHHHH-------------HHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHcCCcCCCCC
Q ss_pred ----CHHHHHHHHHHHHhcCCHhHHHHH
Q 006012 625 ----DVVTYTTLMKALIRVDKFHKVFSS 648 (664)
Q Consensus 625 ----~~~~~~~l~~a~~~~g~~~~A~~~ 648 (664)
+..+-..+.....-+|-++.+-++
T Consensus 226 ~~vl~~~~~r~v~s~M~TCGmYd~SG~f 253 (319)
T PRK12356 226 KRVVDADNVPYILAEMTMEGLYERSGDW 253 (319)
T ss_pred CeecCHHHHHHHHHHHHHcCCccchhhH
No 469
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=20.97 E-value=2.7e+02 Score=22.52 Aligned_cols=24 Identities=8% Similarity=0.332 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 197 NALISACARNDDLEKALNLMSKMR 220 (664)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~m~ 220 (664)
..++..|...|+.++|...+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 456677888889999888887763
No 470
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.64 E-value=1.5e+03 Score=27.22 Aligned_cols=135 Identities=9% Similarity=-0.025 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 477 TWNTLIDCHFKCGRYDRAEELFEEMQERG---YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVD 553 (664)
Q Consensus 477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 553 (664)
-|...+..+-+.+..+.+.++-...++.- .+--..+++.+.+.....|.+-+|...+-.-.. ...-......++-
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlvi 1062 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVI 1062 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHH
Confidence 35667777777788888877777766541 111234566777777777777777654432211 1112345566777
Q ss_pred HHHhcCChHHHHHH-HhhhHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012 554 IYGQSGRFDDAIEC-LEGLSDQAVN-AFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAV 613 (664)
Q Consensus 554 ~~~~~g~~~~A~~~-~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 613 (664)
.++.+|.++.-.+. |-|+.++-.. ++....+....-....|+.|..-+...+++.+|-.+
T Consensus 1063 vLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1063 VLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 78888877654331 1144444444 333333221111223466666666677777776654
No 471
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=20.47 E-value=3.9e+02 Score=22.00 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=22.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012 481 LIDCHFKCGRYDRAEELFEEMQERGYFPCTTT 512 (664)
Q Consensus 481 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 512 (664)
+|+-+.+|...++|+++.+-|.++| ..+...
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~ 97 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEE 97 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 4555678888888999988888887 344433
No 472
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=20.42 E-value=3.4e+02 Score=19.53 Aligned_cols=16 Identities=31% Similarity=0.200 Sum_probs=6.7
Q ss_pred HcCCHHHHHHHHHHHH
Q 006012 277 KAGDASKAMRFLGMAQ 292 (664)
Q Consensus 277 ~~g~~~~A~~~~~~~~ 292 (664)
..|++-+|-++++.+-
T Consensus 11 n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELW 26 (62)
T ss_dssp HTT-HHHHHHHHHHHC
T ss_pred cCCCHHHhHHHHHHHH
Confidence 3444444444444443
No 473
>PHA03100 ankyrin repeat protein; Provisional
Probab=20.26 E-value=7.9e+02 Score=26.13 Aligned_cols=11 Identities=27% Similarity=0.292 Sum_probs=4.7
Q ss_pred HHHHHhcCCHH
Q 006012 342 LKGYVKMGYLK 352 (664)
Q Consensus 342 i~~~~~~g~~~ 352 (664)
+...+..|+.+
T Consensus 180 L~~A~~~~~~~ 190 (480)
T PHA03100 180 LHIAVEKGNID 190 (480)
T ss_pred HHHHHHhCCHH
Confidence 34444444433
No 474
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=20.23 E-value=4.3e+02 Score=20.67 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006012 493 RAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAI 565 (664)
Q Consensus 493 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 565 (664)
.+.++++.+.++|+ -+......+-.+-...|+.+.|.+++..+. .| +..|..++.++...|.-+-|.
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 35577788888884 344444444444446799999999999998 54 246788899988888765543
No 475
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=20.10 E-value=7.8e+02 Score=23.61 Aligned_cols=115 Identities=12% Similarity=0.104 Sum_probs=77.0
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCH
Q 006012 449 TFGKYNCLHHAMAAFDRMLSEGIEPDT-ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTT-YNIMINLLGEQERW 526 (664)
Q Consensus 449 ~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~g~~ 526 (664)
-|.....++.|...|.+.+.. .|+. .-|+.-+.+|.+..+++.+..--.+.++. .||.+- ...+..+......+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 355566788899988777765 4665 45667778888999999988877777665 355443 33444556677888
Q ss_pred HHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006012 527 EDVKRLLGNMRA----QGLLPNVVTYTTLVDIYGQSGRFDDAIEC 567 (664)
Q Consensus 527 ~~a~~~~~~m~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 567 (664)
++|...+.+... ..+.+-......|..+--+.=...+..++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri 139 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRI 139 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHH
Confidence 999988887743 34555666777776665444444444433
Done!