Query 006012
Match_columns 664
No_of_seqs 788 out of 3565
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 13:36:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.5E-37 8.5E-42 342.3 44.8 471 162-652 83-576 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3E-36 1E-40 333.6 43.1 482 128-637 86-595 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.5E-29 5E-34 269.4 22.7 202 427-639 12-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 5E-29 1.7E-33 265.3 26.1 213 319-557 9-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 5.6E-25 1.9E-29 229.3 49.7 382 199-641 5-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 4.6E-25 1.6E-29 230.0 45.7 373 139-559 11-387 (388)
7 2gw1_A Mitochondrial precursor 99.9 7E-22 2.4E-26 213.7 35.6 437 193-651 6-474 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.4E-20 4.8E-25 200.0 41.8 360 262-645 23-444 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 1.4E-20 4.9E-25 199.9 41.8 360 194-565 27-445 (450)
10 2gw1_A Mitochondrial precursor 99.9 2.3E-20 8E-25 201.7 36.3 434 134-627 13-483 (514)
11 3fp2_A TPR repeat-containing p 99.9 1.5E-19 5.2E-24 196.6 40.1 430 193-651 25-487 (537)
12 3fp2_A TPR repeat-containing p 99.9 1.4E-18 4.7E-23 189.0 38.9 397 192-620 58-491 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 2.8E-17 9.6E-22 168.3 40.8 332 264-639 2-353 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 3.5E-17 1.2E-21 167.5 41.2 321 192-557 2-352 (359)
15 3hym_B Cell division cycle pro 99.8 5.5E-17 1.9E-21 164.1 32.5 294 262-562 19-322 (330)
16 2xm6_A Protein corresponding t 99.8 1.6E-14 5.6E-19 154.9 52.2 366 192-635 38-449 (490)
17 2xm6_A Protein corresponding t 99.8 2.2E-14 7.6E-19 153.9 53.1 349 263-652 37-429 (490)
18 3hym_B Cell division cycle pro 99.8 1.4E-16 4.6E-21 161.2 31.3 290 335-643 22-322 (330)
19 1fch_A Peroxisomal targeting s 99.8 8E-17 2.7E-21 165.9 27.3 291 275-570 35-355 (368)
20 2ooe_A Cleavage stimulation fa 99.8 2.6E-14 8.9E-19 155.0 47.4 410 150-569 2-487 (530)
21 2ooe_A Cleavage stimulation fa 99.8 4.2E-14 1.5E-18 153.3 48.4 418 189-650 9-487 (530)
22 1xi4_A Clathrin heavy chain; a 99.7 8.4E-13 2.9E-17 148.9 54.6 446 124-650 951-1440(1630)
23 4eqf_A PEX5-related protein; a 99.7 1.5E-16 5.3E-21 163.7 21.8 272 337-616 67-352 (365)
24 1fch_A Peroxisomal targeting s 99.7 8.4E-16 2.9E-20 158.2 27.0 267 265-536 64-356 (368)
25 1xi4_A Clathrin heavy chain; a 99.7 1.5E-12 5E-17 147.0 54.2 425 130-615 988-1440(1630)
26 4eqf_A PEX5-related protein; a 99.7 4.9E-16 1.7E-20 160.0 24.9 264 302-569 67-351 (365)
27 1b89_A Protein (clathrin heavy 99.7 4.7E-16 1.6E-20 157.8 22.6 282 175-497 15-304 (449)
28 3cv0_A Peroxisome targeting si 99.7 3.3E-15 1.1E-19 150.7 28.7 278 265-570 21-311 (327)
29 3spa_A Mtrpol, DNA-directed RN 99.7 1.4E-17 4.7E-22 181.8 11.1 153 262-419 124-286 (1134)
30 3spa_A Mtrpol, DNA-directed RN 99.7 2.1E-17 7.3E-22 180.3 12.0 165 297-466 124-307 (1134)
31 3cv0_A Peroxisome targeting si 99.7 2.9E-15 9.9E-20 151.2 26.7 280 227-536 20-312 (327)
32 4g1t_A Interferon-induced prot 99.7 1.8E-14 6.1E-19 153.8 33.1 361 262-650 48-454 (472)
33 1b89_A Protein (clathrin heavy 99.7 1.2E-16 4.2E-21 162.1 14.6 291 277-619 15-307 (449)
34 3mkr_A Coatomer subunit epsilo 99.7 7.8E-15 2.7E-19 145.4 27.4 273 273-566 7-286 (291)
35 3mkr_A Coatomer subunit epsilo 99.7 3E-14 1E-18 141.2 27.3 275 344-649 8-288 (291)
36 4g1t_A Interferon-induced prot 99.6 3E-13 1E-17 144.3 34.9 361 163-570 51-455 (472)
37 3uq3_A Heat shock protein STI1 99.6 3.4E-13 1.2E-17 130.7 25.3 224 266-538 6-235 (258)
38 3uq3_A Heat shock protein STI1 99.6 6.5E-13 2.2E-17 128.7 25.7 224 228-467 5-234 (258)
39 2pl2_A Hypothetical conserved 99.6 7.6E-13 2.6E-17 125.1 23.4 199 262-466 2-211 (217)
40 2pl2_A Hypothetical conserved 99.5 1.5E-12 5.1E-17 123.0 22.9 84 298-383 3-86 (217)
41 1ouv_A Conserved hypothetical 99.5 4.6E-11 1.6E-15 117.1 33.3 224 264-505 5-252 (273)
42 2h6f_A Protein farnesyltransfe 99.5 5.2E-12 1.8E-16 129.5 26.3 248 265-520 97-363 (382)
43 3u4t_A TPR repeat-containing p 99.5 4E-12 1.4E-16 124.5 24.4 233 268-504 6-250 (272)
44 1ouv_A Conserved hypothetical 99.5 6.2E-11 2.1E-15 116.2 33.0 224 299-540 5-252 (273)
45 2ho1_A Type 4 fimbrial biogene 99.5 1.8E-11 6.2E-16 118.3 27.9 198 303-504 40-238 (252)
46 2ho1_A Type 4 fimbrial biogene 99.5 1.9E-11 6.5E-16 118.1 27.1 202 335-540 37-239 (252)
47 2vq2_A PILW, putative fimbrial 99.5 2.3E-11 7.9E-16 114.9 26.5 200 264-466 7-208 (225)
48 2vq2_A PILW, putative fimbrial 99.5 4E-11 1.4E-15 113.3 28.1 201 299-502 7-209 (225)
49 3u4t_A TPR repeat-containing p 99.5 1.2E-11 4.1E-16 121.0 25.1 246 301-551 4-261 (272)
50 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.5E-12 1.2E-16 124.9 21.2 221 278-504 18-244 (275)
51 3e4b_A ALGK; tetratricopeptide 99.5 1.3E-11 4.5E-16 130.4 27.0 313 198-540 8-352 (452)
52 2q7f_A YRRB protein; TPR, prot 99.5 5E-12 1.7E-16 121.3 21.7 200 265-504 23-222 (243)
53 3e4b_A ALGK; tetratricopeptide 99.5 3.7E-12 1.3E-16 134.6 22.4 374 234-650 9-416 (452)
54 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.6E-12 5.4E-17 127.5 18.3 248 311-568 16-269 (275)
55 2q7f_A YRRB protein; TPR, prot 99.5 5.3E-12 1.8E-16 121.2 21.5 211 334-550 22-232 (243)
56 2h6f_A Protein farnesyltransfe 99.5 1.6E-11 5.4E-16 125.9 25.6 248 300-556 97-364 (382)
57 4a1s_A PINS, partner of inscut 99.4 7.9E-12 2.7E-16 130.5 19.9 283 300-619 48-371 (411)
58 3sf4_A G-protein-signaling mod 99.4 1.2E-11 4E-16 128.7 20.6 301 262-563 6-365 (406)
59 3sf4_A G-protein-signaling mod 99.4 1E-11 3.4E-16 129.2 19.5 311 297-643 6-364 (406)
60 4a1s_A PINS, partner of inscut 99.4 1.3E-11 4.6E-16 128.7 20.0 236 266-502 49-330 (411)
61 3ro2_A PINS homolog, G-protein 99.3 5.4E-11 1.8E-15 119.8 21.0 164 268-432 8-210 (338)
62 4e6h_A MRNA 3'-END-processing 99.3 3E-08 1E-12 108.6 43.8 427 187-650 60-565 (679)
63 3ro2_A PINS homolog, G-protein 99.3 7.7E-11 2.6E-15 118.6 21.9 281 301-619 6-331 (338)
64 2ond_A Cleavage stimulation fa 99.3 1.5E-09 5.2E-14 108.4 30.6 218 282-503 33-269 (308)
65 3vtx_A MAMA; tetratricopeptide 99.3 4E-10 1.4E-14 103.0 23.7 168 263-434 3-170 (184)
66 2ond_A Cleavage stimulation fa 99.3 1.6E-09 5.5E-14 108.2 30.1 218 317-539 33-270 (308)
67 4e6h_A MRNA 3'-END-processing 99.3 3.4E-08 1.2E-12 108.1 41.6 213 353-569 327-565 (679)
68 3ulq_A Response regulator aspa 99.3 2.2E-10 7.7E-15 118.3 23.4 232 411-652 109-365 (383)
69 4abn_A Tetratricopeptide repea 99.3 1.7E-10 5.6E-15 122.8 22.2 211 421-650 84-316 (474)
70 3vtx_A MAMA; tetratricopeptide 99.3 6.6E-10 2.2E-14 101.5 23.2 165 370-538 5-169 (184)
71 4abn_A Tetratricopeptide repea 99.3 2.7E-10 9.3E-15 121.1 22.6 213 351-570 84-317 (474)
72 3ulq_A Response regulator aspa 99.3 2.4E-10 8.4E-15 118.0 21.7 229 271-502 109-366 (383)
73 3nf1_A KLC 1, kinesin light ch 99.3 2.9E-11 9.9E-16 120.6 13.4 172 262-433 24-223 (311)
74 3nf1_A KLC 1, kinesin light ch 99.3 3.1E-11 1.1E-15 120.4 13.0 170 299-468 26-223 (311)
75 1hz4_A MALT regulatory protein 99.2 6.6E-09 2.3E-13 106.7 29.0 231 409-646 97-356 (373)
76 3q15_A PSP28, response regulat 99.2 1.7E-09 5.7E-14 111.5 23.1 230 412-652 108-362 (378)
77 3q15_A PSP28, response regulat 99.2 4.3E-09 1.5E-13 108.4 26.1 306 263-572 8-363 (378)
78 1hz4_A MALT regulatory protein 99.2 1E-08 3.4E-13 105.3 28.1 163 270-432 19-201 (373)
79 3as5_A MAMA; tetratricopeptide 99.2 5E-09 1.7E-13 95.1 21.7 164 266-433 9-172 (186)
80 3as5_A MAMA; tetratricopeptide 99.1 5.1E-09 1.8E-13 95.1 20.7 95 441-537 77-171 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.1 3.3E-09 1.1E-13 117.5 21.1 168 262-433 6-173 (723)
82 4i17_A Hypothetical protein; T 99.0 3E-08 1E-12 93.9 22.4 196 333-540 5-210 (228)
83 3edt_B KLC 2, kinesin light ch 99.0 1.7E-09 5.7E-14 105.9 13.9 173 474-651 42-277 (283)
84 4gyw_A UDP-N-acetylglucosamine 99.0 1.2E-08 4.2E-13 112.9 22.3 159 407-569 11-169 (723)
85 4i17_A Hypothetical protein; T 99.0 3.2E-08 1.1E-12 93.7 22.3 197 263-470 5-210 (228)
86 3edt_B KLC 2, kinesin light ch 99.0 5.3E-09 1.8E-13 102.2 14.2 120 312-431 13-153 (283)
87 3mv2_B Coatomer subunit epsilo 98.9 3E-07 1E-11 89.4 23.9 242 275-540 23-283 (310)
88 2fo7_A Synthetic consensus TPR 98.9 1.1E-07 3.8E-12 80.8 18.0 129 267-398 3-131 (136)
89 1qqe_A Vesicular transport pro 98.8 1.3E-07 4.6E-12 93.3 19.2 92 271-362 43-145 (292)
90 2fo7_A Synthetic consensus TPR 98.8 1.6E-07 5.5E-12 79.8 17.4 126 373-501 4-129 (136)
91 1qqe_A Vesicular transport pro 98.8 7.1E-08 2.4E-12 95.3 16.9 212 280-538 32-268 (292)
92 3urz_A Uncharacterized protein 98.8 2.6E-07 8.9E-12 86.0 18.8 160 270-434 9-186 (208)
93 3urz_A Uncharacterized protein 98.8 1.7E-07 5.9E-12 87.3 17.3 139 479-634 58-198 (208)
94 3qky_A Outer membrane assembly 98.8 2.8E-07 9.6E-12 89.2 19.1 188 262-469 12-224 (261)
95 3mv2_B Coatomer subunit epsilo 98.8 1.8E-06 6.2E-11 83.9 24.0 61 303-363 103-164 (310)
96 3dra_A Protein farnesyltransfe 98.8 3.5E-06 1.2E-10 82.7 25.5 219 280-503 48-286 (306)
97 3qky_A Outer membrane assembly 98.7 6.3E-07 2.1E-11 86.7 19.5 100 299-399 14-126 (261)
98 2pzi_A Probable serine/threoni 98.7 9.5E-08 3.2E-12 106.2 14.6 173 381-560 402-583 (681)
99 2ifu_A Gamma-SNAP; membrane fu 98.7 4.5E-07 1.5E-11 90.2 18.1 190 449-650 45-256 (307)
100 2pzi_A Probable serine/threoni 98.7 1.8E-07 6.3E-12 103.9 16.2 174 276-455 402-583 (681)
101 2uy1_A Cleavage stimulation fa 98.7 0.00011 3.7E-09 77.8 36.5 341 279-650 28-408 (493)
102 3dra_A Protein farnesyltransfe 98.7 1.6E-05 5.6E-10 77.9 27.6 221 314-539 47-287 (306)
103 3rjv_A Putative SEL1 repeat pr 98.7 3.5E-06 1.2E-10 78.5 21.7 175 354-540 5-198 (212)
104 2yhc_A BAMD, UPF0169 lipoprote 98.6 3.6E-06 1.2E-10 79.3 21.4 185 265-470 4-214 (225)
105 4ga2_A E3 SUMO-protein ligase 98.6 1.3E-07 4.4E-12 82.9 10.4 143 273-419 5-148 (150)
106 2r5s_A Uncharacterized protein 98.6 3.2E-07 1.1E-11 82.8 13.4 160 269-432 10-171 (176)
107 3rjv_A Putative SEL1 repeat pr 98.6 4.3E-06 1.5E-10 77.9 21.1 163 334-505 17-198 (212)
108 3qou_A Protein YBBN; thioredox 98.6 1.2E-06 4.1E-11 86.1 17.9 166 262-431 114-281 (287)
109 2ifu_A Gamma-SNAP; membrane fu 98.6 1.3E-06 4.6E-11 86.7 18.4 124 441-567 117-254 (307)
110 2vsy_A XCC0866; transferase, g 98.6 9.2E-07 3.1E-11 96.3 18.4 146 251-400 10-158 (568)
111 4ga2_A E3 SUMO-protein ligase 98.6 1.7E-07 5.9E-12 82.1 10.0 142 414-559 6-148 (150)
112 2uy1_A Cleavage stimulation fa 98.6 0.00015 5.2E-09 76.7 34.4 353 195-569 17-408 (493)
113 2yhc_A BAMD, UPF0169 lipoprote 98.6 6.2E-06 2.1E-10 77.6 21.3 186 334-539 3-213 (225)
114 3qou_A Protein YBBN; thioredox 98.6 1.3E-06 4.6E-11 85.7 17.1 162 404-569 116-279 (287)
115 2vsy_A XCC0866; transferase, g 98.6 1.2E-06 4.2E-11 95.3 18.3 152 314-469 3-157 (568)
116 2r5s_A Uncharacterized protein 98.6 7.1E-07 2.4E-11 80.5 13.4 63 439-501 107-170 (176)
117 2qfc_A PLCR protein; TPR, HTH, 98.5 1.7E-05 5.8E-10 78.1 23.4 167 476-650 76-261 (293)
118 3u3w_A Transcriptional activat 98.5 4.3E-05 1.5E-09 75.1 25.7 167 446-619 81-265 (293)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1E-05 3.5E-10 75.2 19.3 129 267-400 8-151 (213)
120 3q7a_A Farnesyltransferase alp 98.5 5.5E-05 1.9E-09 75.0 25.2 169 279-452 68-254 (349)
121 3u3w_A Transcriptional activat 98.4 2E-05 6.9E-10 77.5 21.6 161 271-431 81-263 (293)
122 1a17_A Serine/threonine protei 98.4 9.9E-06 3.4E-10 71.6 17.1 129 266-397 14-144 (166)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.4E-05 4.9E-10 74.1 18.6 121 413-539 14-150 (213)
124 4gco_A Protein STI-1; structur 98.4 9.3E-06 3.2E-10 68.5 15.2 97 266-364 14-110 (126)
125 3q7a_A Farnesyltransferase alp 98.4 0.00019 6.6E-09 71.1 26.7 223 311-538 65-330 (349)
126 1na0_A Designed protein CTPR3; 98.4 1.6E-05 5.4E-10 66.1 16.3 113 265-380 9-121 (125)
127 2qfc_A PLCR protein; TPR, HTH, 98.4 8.4E-05 2.9E-09 73.0 23.5 171 442-619 77-265 (293)
128 1na0_A Designed protein CTPR3; 98.4 1.8E-05 6E-10 65.8 16.0 113 441-556 10-122 (125)
129 1a17_A Serine/threonine protei 98.3 2E-05 6.9E-10 69.5 16.8 62 476-538 48-109 (166)
130 2c2l_A CHIP, carboxy terminus 98.3 1.3E-05 4.4E-10 78.4 16.7 190 439-650 3-194 (281)
131 4gco_A Protein STI-1; structur 98.3 1.6E-05 5.6E-10 66.9 15.0 96 442-539 15-110 (126)
132 3gw4_A Uncharacterized protein 98.3 8.9E-06 3.1E-10 74.7 14.3 160 452-619 4-175 (203)
133 2lni_A Stress-induced-phosphop 98.3 1.4E-05 5E-10 67.4 14.5 119 262-383 13-131 (133)
134 2vyi_A SGTA protein; chaperone 98.3 1.8E-05 6E-10 66.5 14.8 118 265-385 12-129 (131)
135 2vyi_A SGTA protein; chaperone 98.3 2.1E-05 7.2E-10 65.9 15.1 119 440-561 12-130 (131)
136 2c2l_A CHIP, carboxy terminus 98.3 3.4E-06 1.2E-10 82.5 10.6 97 265-363 4-100 (281)
137 3gw4_A Uncharacterized protein 98.2 9.5E-06 3.2E-10 74.6 12.9 156 276-432 3-174 (203)
138 2lni_A Stress-induced-phosphop 98.2 2.4E-05 8.3E-10 66.0 14.3 93 409-503 20-112 (133)
139 3gyz_A Chaperone protein IPGC; 98.2 6.5E-06 2.2E-10 71.8 10.6 95 302-398 38-132 (151)
140 1p5q_A FKBP52, FK506-binding p 98.2 3E-05 1E-09 77.9 16.5 131 265-397 147-292 (336)
141 4f3v_A ESX-1 secretion system 98.2 6.3E-05 2.1E-09 72.1 17.4 129 374-505 106-238 (282)
142 3gyz_A Chaperone protein IPGC; 98.2 1.9E-05 6.6E-10 68.8 12.7 103 264-370 35-137 (151)
143 3dss_A Geranylgeranyl transfer 98.2 0.0011 3.6E-08 65.5 26.4 137 277-417 41-191 (331)
144 2vgx_A Chaperone SYCD; alterna 98.2 1.2E-05 4E-10 70.1 10.9 96 301-398 22-117 (148)
145 1p5q_A FKBP52, FK506-binding p 98.2 4E-05 1.4E-09 77.0 16.4 95 475-571 196-291 (336)
146 2e2e_A Formate-dependent nitri 98.2 9.8E-06 3.4E-10 72.8 10.8 120 417-539 22-144 (177)
147 4f3v_A ESX-1 secretion system 98.2 2.7E-05 9.3E-10 74.6 14.2 199 277-481 18-247 (282)
148 2e2e_A Formate-dependent nitri 98.2 1.7E-05 5.7E-10 71.3 12.2 120 486-620 21-144 (177)
149 3upv_A Heat shock protein STI1 98.1 5.7E-05 1.9E-09 63.3 14.1 97 266-364 5-101 (126)
150 1elw_A TPR1-domain of HOP; HOP 98.1 0.00013 4.3E-09 59.8 15.6 97 266-364 5-101 (118)
151 4b4t_Q 26S proteasome regulato 98.1 0.00029 9.9E-09 73.3 21.4 117 452-568 107-239 (434)
152 3dss_A Geranylgeranyl transfer 98.1 0.0024 8.1E-08 63.0 26.4 190 311-505 40-268 (331)
153 1elw_A TPR1-domain of HOP; HOP 98.1 0.00017 5.6E-09 59.0 15.6 96 442-539 6-101 (118)
154 2vgx_A Chaperone SYCD; alterna 98.1 3E-05 1E-09 67.4 11.3 98 440-539 21-118 (148)
155 4gcn_A Protein STI-1; structur 98.1 7.1E-05 2.4E-09 63.0 13.3 110 511-632 9-122 (127)
156 4gcn_A Protein STI-1; structur 98.0 8.9E-05 3E-09 62.4 13.6 97 266-363 9-111 (127)
157 2fbn_A 70 kDa peptidylprolyl i 98.0 9.3E-06 3.2E-10 74.6 8.1 86 443-530 91-176 (198)
158 3upv_A Heat shock protein STI1 98.0 9.4E-05 3.2E-09 62.0 13.8 95 442-538 6-100 (126)
159 2fbn_A 70 kDa peptidylprolyl i 98.0 0.00012 4.1E-09 67.0 14.8 121 267-390 40-176 (198)
160 2xcb_A PCRH, regulatory protei 98.0 0.00011 3.8E-09 63.1 13.1 95 267-363 20-114 (142)
161 3sz7_A HSC70 cochaperone (SGT) 98.0 0.00016 5.6E-09 63.8 14.5 98 440-539 11-108 (164)
162 1elr_A TPR2A-domain of HOP; HO 98.0 8.7E-05 3E-09 62.1 12.1 109 442-553 6-120 (131)
163 3q49_B STIP1 homology and U bo 98.0 0.0002 6.9E-09 60.7 14.5 98 264-363 8-105 (137)
164 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00017 5.8E-09 63.7 14.3 99 264-364 10-108 (164)
165 1elr_A TPR2A-domain of HOP; HO 97.9 9.9E-05 3.4E-09 61.8 12.1 98 266-364 5-108 (131)
166 3q49_B STIP1 homology and U bo 97.9 0.00049 1.7E-08 58.3 16.7 94 474-569 8-101 (137)
167 4b4t_Q 26S proteasome regulato 97.9 0.00083 2.8E-08 69.8 21.7 161 307-467 11-202 (434)
168 2kck_A TPR repeat; tetratricop 97.9 0.0001 3.6E-09 59.7 11.7 96 442-539 8-106 (112)
169 2dba_A Smooth muscle cell asso 97.9 0.00041 1.4E-08 59.5 16.0 98 439-539 27-128 (148)
170 2dba_A Smooth muscle cell asso 97.9 0.00045 1.5E-08 59.2 16.2 99 404-505 27-129 (148)
171 2xcb_A PCRH, regulatory protei 97.9 0.00019 6.4E-09 61.7 13.3 98 300-399 18-115 (142)
172 2kck_A TPR repeat; tetratricop 97.9 0.00011 3.6E-09 59.6 11.2 97 266-364 7-106 (112)
173 3ro3_A PINS homolog, G-protein 97.8 0.00014 4.8E-09 63.4 11.9 136 477-619 11-157 (164)
174 1hxi_A PEX5, peroxisome target 97.8 0.00016 5.6E-09 60.2 11.5 94 269-364 21-114 (121)
175 1wao_1 Serine/threonine protei 97.8 0.00014 4.8E-09 76.8 13.4 118 379-499 15-134 (477)
176 3ro3_A PINS homolog, G-protein 97.8 0.00017 5.7E-09 62.9 11.5 132 266-397 10-156 (164)
177 1hxi_A PEX5, peroxisome target 97.8 0.00026 8.9E-09 58.9 11.7 95 303-399 20-114 (121)
178 2xev_A YBGF; tetratricopeptide 97.7 0.0015 5E-08 54.5 15.4 92 271-364 8-105 (129)
179 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00064 2.2E-08 71.3 15.2 123 265-390 268-405 (457)
180 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00051 1.7E-08 72.1 14.3 139 405-566 268-406 (457)
181 1wao_1 Serine/threonine protei 97.6 0.00017 5.8E-09 76.2 10.5 115 451-568 17-133 (477)
182 1ihg_A Cyclophilin 40; ppiase 97.6 0.00057 1.9E-08 69.4 13.9 96 267-363 225-335 (370)
183 2hr2_A Hypothetical protein; a 97.6 0.0012 4E-08 57.1 13.4 100 514-619 15-130 (159)
184 2xev_A YBGF; tetratricopeptide 97.6 0.0021 7.2E-08 53.5 14.8 58 445-503 44-104 (129)
185 3k9i_A BH0479 protein; putativ 97.6 0.00015 5E-09 59.9 7.2 86 278-364 3-90 (117)
186 1ihg_A Cyclophilin 40; ppiase 97.6 0.00061 2.1E-08 69.2 13.2 140 405-566 223-362 (370)
187 3k9i_A BH0479 protein; putativ 97.5 0.00015 5.2E-09 59.8 6.7 86 453-539 3-90 (117)
188 3rkv_A Putative peptidylprolyl 97.5 0.001 3.4E-08 58.4 12.4 65 474-539 62-126 (162)
189 3n71_A Histone lysine methyltr 97.5 0.00036 1.2E-08 73.3 10.9 130 485-619 319-463 (490)
190 3rkv_A Putative peptidylprolyl 97.5 0.0013 4.6E-08 57.6 13.0 99 265-364 11-126 (162)
191 1dce_A Protein (RAB geranylger 97.5 0.0061 2.1E-07 65.5 19.9 133 281-417 45-190 (567)
192 3n71_A Histone lysine methyltr 97.4 0.001 3.5E-08 69.8 13.3 130 519-653 318-462 (490)
193 1dce_A Protein (RAB geranylger 97.4 0.0078 2.7E-07 64.7 20.4 171 352-527 46-243 (567)
194 1zu2_A Mitochondrial import re 97.4 0.00052 1.8E-08 59.2 8.8 110 521-636 13-134 (158)
195 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00048 1.7E-08 69.0 9.2 147 266-433 180-327 (338)
196 2hr2_A Hypothetical protein; a 97.3 0.0031 1.1E-07 54.5 12.6 61 337-397 59-129 (159)
197 1klx_A Cysteine rich protein B 97.3 0.0083 2.8E-07 50.9 15.1 111 279-400 9-127 (138)
198 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00057 2E-08 68.5 8.9 150 369-539 178-328 (338)
199 1klx_A Cysteine rich protein B 97.3 0.011 3.8E-07 50.1 15.7 110 420-540 10-127 (138)
200 2l6j_A TPR repeat-containing p 97.3 0.00057 1.9E-08 55.3 7.0 91 474-567 3-100 (111)
201 1na3_A Designed protein CTPR2; 97.1 0.0053 1.8E-07 47.2 11.0 81 475-557 9-89 (91)
202 1na3_A Designed protein CTPR2; 97.1 0.0059 2E-07 46.9 11.1 80 265-346 9-88 (91)
203 2l6j_A TPR repeat-containing p 97.1 0.0005 1.7E-08 55.6 4.9 64 265-329 4-67 (111)
204 2kat_A Uncharacterized protein 97.0 0.0054 1.8E-07 49.9 10.5 78 459-538 4-81 (115)
205 2kat_A Uncharacterized protein 96.9 0.0075 2.6E-07 49.0 10.9 76 285-362 5-80 (115)
206 3ma5_A Tetratricopeptide repea 96.8 0.0051 1.8E-07 48.7 8.7 64 474-538 6-69 (100)
207 1zu2_A Mitochondrial import re 96.8 0.0034 1.2E-07 54.1 7.9 92 454-549 16-128 (158)
208 3mkq_A Coatomer beta'-subunit; 96.8 0.091 3.1E-06 59.2 22.1 126 409-567 633-758 (814)
209 3ma5_A Tetratricopeptide repea 96.8 0.0064 2.2E-07 48.2 8.9 66 262-328 4-69 (100)
210 3ly7_A Transcriptional activat 96.7 0.1 3.5E-06 51.7 18.8 58 168-227 169-231 (372)
211 3qww_A SET and MYND domain-con 96.4 0.014 4.9E-07 60.0 11.0 93 522-619 310-410 (433)
212 3qwp_A SET and MYND domain-con 96.3 0.034 1.2E-06 57.3 12.7 98 517-619 294-399 (429)
213 3mkq_A Coatomer beta'-subunit; 96.3 0.24 8.1E-06 55.8 21.1 99 275-397 609-708 (814)
214 3ly7_A Transcriptional activat 95.9 0.29 9.9E-06 48.4 16.9 74 542-630 274-347 (372)
215 3qww_A SET and MYND domain-con 95.9 0.0085 2.9E-07 61.7 6.0 89 557-650 310-406 (433)
216 2kc7_A BFR218_protein; tetratr 95.8 0.035 1.2E-06 43.4 8.0 58 272-330 7-65 (99)
217 3qwp_A SET and MYND domain-con 95.6 0.12 3.9E-06 53.3 13.0 89 309-397 296-398 (429)
218 2kc7_A BFR218_protein; tetratr 95.5 0.074 2.5E-06 41.4 9.0 57 482-539 7-64 (99)
219 3mkq_B Coatomer subunit alpha; 95.3 1.3 4.6E-05 38.5 17.1 103 273-396 13-115 (177)
220 1wy6_A Hypothetical protein ST 95.0 1.2 4.1E-05 36.5 14.7 68 474-542 90-157 (172)
221 3bee_A Putative YFRE protein; 94.4 0.27 9.2E-06 38.0 9.2 65 264-329 5-72 (93)
222 3mkq_B Coatomer subunit alpha; 94.1 2.7 9.2E-05 36.6 16.5 45 346-396 16-60 (177)
223 3bee_A Putative YFRE protein; 94.1 0.44 1.5E-05 36.7 9.8 66 473-539 4-72 (93)
224 2v5f_A Prolyl 4-hydroxylase su 94.0 0.52 1.8E-05 37.2 10.4 67 263-329 3-75 (104)
225 1pc2_A Mitochondria fission pr 93.9 0.65 2.2E-05 39.4 11.1 82 456-539 14-100 (152)
226 1pc2_A Mitochondria fission pr 93.5 0.62 2.1E-05 39.5 10.3 81 282-364 15-100 (152)
227 1wy6_A Hypothetical protein ST 93.0 3.2 0.00011 34.0 14.6 140 276-437 18-157 (172)
228 2v5f_A Prolyl 4-hydroxylase su 92.8 1 3.4E-05 35.4 10.3 28 476-503 47-74 (104)
229 3u64_A Protein TP_0956; tetrat 92.0 1.1 3.9E-05 42.4 10.9 92 281-374 179-281 (301)
230 3u64_A Protein TP_0956; tetrat 90.4 2.5 8.4E-05 40.1 11.4 85 316-402 179-272 (301)
231 4h7y_A Dual specificity protei 90.1 2.1 7.3E-05 35.9 9.4 103 298-402 11-126 (161)
232 4gns_B Protein CSD3, chitin bi 89.6 6.9 0.00024 42.8 15.8 53 597-650 343-395 (754)
233 1nzn_A CGI-135 protein, fissio 89.1 1.6 5.5E-05 35.5 7.9 82 282-364 18-103 (126)
234 4ady_A RPN2, 26S proteasome re 88.9 34 0.0012 38.4 22.7 20 344-363 569-588 (963)
235 4h7y_A Dual specificity protei 88.9 3.2 0.00011 34.9 9.6 104 264-369 12-128 (161)
236 2wpv_A GET4, UPF0363 protein Y 88.8 17 0.00059 34.9 21.2 179 175-397 25-215 (312)
237 4fhn_B Nucleoporin NUP120; pro 88.1 9.4 0.00032 44.6 16.8 164 171-353 820-989 (1139)
238 1nzn_A CGI-135 protein, fissio 88.1 1.9 6.5E-05 35.1 7.7 23 411-433 80-102 (126)
239 4b4t_P 26S proteasome regulato 87.7 25 0.00086 35.9 18.0 50 279-328 30-84 (445)
240 4fhn_B Nucleoporin NUP120; pro 86.5 12 0.00042 43.6 16.6 201 411-618 818-1048(1139)
241 3lvg_A Clathrin heavy chain 1; 86.4 0.0016 5.3E-08 65.8 -13.7 242 165-425 56-324 (624)
242 3lpz_A GET4 (YOR164C homolog); 86.2 25 0.00087 34.0 22.1 180 174-397 23-214 (336)
243 2ff4_A Probable regulatory pro 86.1 3.3 0.00011 41.7 10.1 72 478-550 174-250 (388)
244 4gns_B Protein CSD3, chitin bi 86.0 4.3 0.00015 44.4 11.5 128 196-327 251-398 (754)
245 2ff4_A Probable regulatory pro 84.8 4.1 0.00014 41.0 10.1 125 191-337 110-247 (388)
246 3o48_A Mitochondria fission 1 82.4 13 0.00045 30.4 10.0 77 540-626 35-111 (134)
247 2uwj_G Type III export protein 81.8 16 0.00053 28.1 11.0 87 139-231 18-105 (115)
248 2p58_C Putative type III secre 81.7 16 0.00054 28.1 10.9 87 139-231 19-106 (116)
249 3ffl_A Anaphase-promoting comp 81.1 9.8 0.00033 32.5 9.2 53 517-569 27-87 (167)
250 3lvg_A Clathrin heavy chain 1; 78.2 6.1E-05 2.1E-09 75.8 -27.2 242 265-534 54-315 (624)
251 1v54_E Cytochrome C oxidase po 78.1 14 0.00046 28.6 8.1 43 608-650 27-69 (109)
252 1y8m_A FIS1; mitochondria, unk 78.1 28 0.00097 28.8 12.3 75 541-625 35-109 (144)
253 4ady_A RPN2, 26S proteasome re 75.4 1.1E+02 0.0038 34.3 26.9 51 417-468 536-588 (963)
254 3o48_A Mitochondria fission 1 74.6 24 0.00082 28.8 9.3 67 368-434 38-107 (134)
255 4b4t_P 26S proteasome regulato 69.6 1E+02 0.0034 31.3 21.4 100 513-619 140-246 (445)
256 3ffl_A Anaphase-promoting comp 68.2 29 0.001 29.6 8.9 57 272-328 27-91 (167)
257 2y69_E Cytochrome C oxidase su 67.6 37 0.0013 27.8 8.7 48 281-328 69-116 (152)
258 1v54_E Cytochrome C oxidase po 65.2 45 0.0016 25.7 10.0 46 248-293 28-73 (109)
259 3lpz_A GET4 (YOR164C homolog); 63.0 1.1E+02 0.0038 29.5 24.2 169 165-363 37-215 (336)
260 1y8m_A FIS1; mitochondria, unk 60.5 72 0.0024 26.4 12.5 67 368-434 37-106 (144)
261 3eiq_C Programmed cell death p 60.3 43 0.0015 32.8 9.8 74 478-552 220-295 (358)
262 4b4t_R RPN7, 26S proteasome re 59.8 60 0.0021 32.8 11.4 62 267-328 133-196 (429)
263 2p58_C Putative type III secre 59.4 51 0.0017 25.3 7.6 51 449-505 49-99 (116)
264 1zbp_A Hypothetical protein VP 59.1 20 0.0007 33.3 6.8 55 484-539 6-60 (273)
265 4b4t_R RPN7, 26S proteasome re 57.8 76 0.0026 32.0 11.7 61 302-362 133-195 (429)
266 3txn_A 26S proteasome regulato 57.8 1.5E+02 0.0052 29.4 21.4 235 405-650 19-279 (394)
267 2y69_E Cytochrome C oxidase su 57.5 78 0.0027 25.9 10.0 58 249-307 72-129 (152)
268 3esl_A Checkpoint serine/threo 57.0 80 0.0027 27.9 9.9 56 453-508 92-148 (202)
269 3eiq_C Programmed cell death p 55.7 1.1E+02 0.0038 29.9 11.8 25 268-292 57-81 (358)
270 1zbp_A Hypothetical protein VP 54.2 39 0.0013 31.5 7.7 54 345-399 7-60 (273)
271 2uwj_G Type III export protein 53.7 49 0.0017 25.4 6.7 51 449-505 48-98 (115)
272 2wpv_A GET4, UPF0363 protein Y 47.0 2E+02 0.0068 27.5 23.8 168 165-362 35-215 (312)
273 1qsa_A Protein (soluble lytic 45.9 3E+02 0.01 29.2 42.3 272 148-433 57-347 (618)
274 2d2s_A Exocyst complex compone 41.9 1.5E+02 0.0052 26.9 9.8 43 352-397 76-118 (235)
275 3esl_A Checkpoint serine/threo 41.7 1.8E+02 0.0062 25.6 9.7 56 278-333 92-148 (202)
276 4a1g_A Mitotic checkpoint seri 41.5 1.6E+02 0.0053 24.7 9.9 50 459-508 84-134 (152)
277 2lkw_A Membrane fusion protein 40.5 9.6 0.00033 19.9 0.8 15 3-17 8-22 (26)
278 2zu6_B Programmed cell death p 40.2 1.5E+02 0.0051 28.2 9.8 75 408-483 169-245 (307)
279 1k1a_A B-cell lymphoma 3-encod 39.8 50 0.0017 29.6 6.5 28 200-227 13-40 (241)
280 4gq2_M Nucleoporin NUP120; bet 39.7 1.2E+02 0.0039 34.5 10.5 111 169-294 816-926 (950)
281 2nsz_A Programmed cell death p 37.4 71 0.0024 25.9 6.2 66 195-261 9-74 (129)
282 2ion_A PDCD4, programmed cell 36.9 1.7E+02 0.006 24.3 8.7 65 268-333 12-78 (152)
283 2qx5_A Nucleoporin NIC96; mRNA 36.4 4.3E+02 0.015 28.3 19.9 42 270-312 157-198 (661)
284 3kae_A CDC27, possible protein 36.1 1.3E+02 0.0043 25.9 7.3 51 600-650 71-138 (242)
285 2ion_A PDCD4, programmed cell 34.1 82 0.0028 26.4 6.2 66 195-261 11-76 (152)
286 1wdy_A 2-5A-dependent ribonucl 33.3 63 0.0021 29.8 6.1 6 204-209 47-52 (285)
287 2wvi_A Mitotic checkpoint seri 32.9 2.3E+02 0.0077 24.0 9.5 50 494-543 79-129 (164)
288 2wvi_A Mitotic checkpoint seri 32.9 1.1E+02 0.0037 26.0 6.7 52 575-626 79-131 (164)
289 4aez_C MAD3, mitotic spindle c 31.6 68 0.0023 28.9 5.4 51 575-625 133-184 (223)
290 2d2s_A Exocyst complex compone 31.3 3E+02 0.01 24.9 12.5 85 482-569 25-115 (235)
291 2nsz_A Programmed cell death p 31.2 2.1E+02 0.007 23.1 10.0 65 268-333 10-76 (129)
292 1bpo_A Protein (clathrin); cla 31.2 3.1E+02 0.011 27.8 10.5 81 139-223 341-425 (494)
293 3eu9_A Huntingtin-interacting 29.0 35 0.0012 30.6 3.4 12 203-214 16-27 (240)
294 1wdy_A 2-5A-dependent ribonucl 28.6 63 0.0022 29.7 5.2 57 197-263 6-65 (285)
295 2xig_A Ferric uptake regulatio 27.2 2.1E+02 0.0071 23.7 7.6 59 360-419 17-75 (150)
296 3c1d_A Protein ORAA, regulator 26.9 2.8E+02 0.0095 23.2 9.9 11 356-366 84-94 (159)
297 4b4t_S RPN3, 26S proteasome re 26.8 5.4E+02 0.018 26.5 12.0 65 265-329 231-299 (523)
298 2fu4_A Ferric uptake regulatio 25.9 1.8E+02 0.0063 20.8 6.3 63 580-643 6-69 (83)
299 4g8k_A 2-5A-dependent ribonucl 25.5 3.5E+02 0.012 25.5 10.2 256 197-475 26-329 (337)
300 4b4t_S RPN3, 26S proteasome re 25.0 5.8E+02 0.02 26.3 11.9 65 440-504 231-299 (523)
301 3ltm_A Alpha-REP4; protein eng 24.9 3.3E+02 0.011 23.4 17.1 17 369-385 94-110 (211)
302 4gq2_M Nucleoporin NUP120; bet 24.5 4.5E+02 0.015 29.7 12.0 118 516-640 816-950 (950)
303 3b7b_A Euchromatic histone-lys 24.5 60 0.0021 29.0 4.1 18 450-467 217-234 (237)
304 1k1a_A B-cell lymphoma 3-encod 24.4 86 0.0029 28.0 5.2 26 272-297 13-38 (241)
305 1qsa_A Protein (soluble lytic 23.6 6.7E+02 0.023 26.5 29.8 116 384-503 228-347 (618)
306 4aez_C MAD3, mitotic spindle c 23.4 2.1E+02 0.0072 25.7 7.1 51 458-508 132-183 (223)
307 3kea_A K1L; tropism, ANK repea 23.3 87 0.003 29.2 5.1 12 203-214 38-49 (285)
308 3eu9_A Huntingtin-interacting 23.3 37 0.0013 30.4 2.4 14 271-284 45-58 (240)
309 2fe3_A Peroxide operon regulat 23.0 2.1E+02 0.007 23.5 6.8 58 361-419 13-70 (145)
310 3ltm_A Alpha-REP4; protein eng 22.9 3.6E+02 0.012 23.1 17.8 111 298-420 62-172 (211)
311 3l6a_A Eukaryotic translation 22.4 5.4E+02 0.019 25.0 12.2 26 195-220 14-39 (364)
312 2f6m_A Suppressor protein STP2 22.1 1.4E+02 0.0047 20.8 4.3 47 593-640 4-50 (65)
313 2zu6_B Programmed cell death p 21.8 5.1E+02 0.018 24.5 13.3 70 478-548 169-240 (307)
314 3t8k_A Uncharacterized protein 20.9 1.8E+02 0.0063 24.9 6.4 23 345-367 45-67 (186)
315 2r9g_A AAA ATPase, central reg 20.3 4.4E+02 0.015 23.1 10.2 35 277-312 26-60 (204)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-37 Score=342.27 Aligned_cols=471 Identities=11% Similarity=-0.012 Sum_probs=353.8
Q ss_pred hHHHHHHHHHHHcccCCHHHHHHh---hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 006012 162 YELLYSILIHALGRSEKLYEAFLL---SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSL 238 (664)
Q Consensus 162 ~~~~~~~li~~~~~~~~~~~A~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 238 (664)
+...++.++..|.+.|++++|..+ .....|+..+|+.++.+|.+.|++++|+.+|+++... +++..+++.++..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHH
Confidence 345566666666666666666554 1112335556666666666666666666666665432 45556666666666
Q ss_pred HhcCCCChHHHHHHHHHHHh-C--------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006012 239 TRTNKIDSSLLQKLYKEIEC-D--------------KIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATY 303 (664)
Q Consensus 239 ~~~g~~~~~~~~~l~~~~~~-~--------------~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 303 (664)
.+.|+++++ .++|+++.. . +.+.+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...+
T Consensus 161 ~~~g~~~~A--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 161 VKLYDWQGA--LNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHTTCHHHH--HHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHhhHHHH--HHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 666665432 355552111 1 112345566666666666666666666666665543 2234444
Q ss_pred HHHHHHHHhcCChHHHH--HH-HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 304 AAVITALSNSGRTIEAE--AV-FEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAY 380 (664)
Q Consensus 304 ~~li~~~~~~g~~~~A~--~l-~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 380 (664)
..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. .++..+|+.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 44444333322221111 11 333333333334455666677888999999999999999875 47999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 006012 381 ANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAM 460 (664)
Q Consensus 381 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 460 (664)
.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999998776 4477889999999999999999999999998654 567899999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012 461 AAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG 540 (664)
Q Consensus 461 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 540 (664)
++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++++++.+..
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998754 4568899999999999999999999999999876 5688999999999999999999999999999864
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 541 LLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS--NLALNSLINAFGEDQRDAEAFAVLQYMK 618 (664)
Q Consensus 541 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 618 (664)
. .+..+|+.++.+|.+.|++++|+++++...+ ...+.+..|+ ..+|..++.+|.+.|++++|+++++++.
T Consensus 472 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 472 Q-YDPLLLNELGVVAFNKSDMQTAINHFQNALL-------LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3 3789999999999999999999988653322 2223367788 7899999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006012 619 ENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFF 652 (664)
Q Consensus 619 ~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~~ 652 (664)
+.+ +.+..+|..++.+|.+.|++++|.+.|+..
T Consensus 544 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 544 LLS-TNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 854 458899999999999999999999999844
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-36 Score=333.58 Aligned_cols=482 Identities=11% Similarity=0.021 Sum_probs=402.6
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hC--CCCCCHHHHHHHHHHHH
Q 006012 128 LWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQ--RQRLTPLTYNALISACA 204 (664)
Q Consensus 128 ~~~~~l~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~--~~~~~~~~~~~li~~~~ 204 (664)
.|..++.. +...++++.|..++..+.+.. |. ...+..++.+|.+.|++++|..+ .. ..++++.+|+.++.+|.
T Consensus 86 ~~~~~~~~-~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 86 YLRLWRHD-ALMQQQYKCAAFVGEKVLDIT--GN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHH-HHHTTCHHHHHHHHHHHHHHH--CC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHccCchHHHHHHHHHHhhC--CC-chHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 34555554 446789999999999998755 43 46778899999999999999988 22 25788999999999999
Q ss_pred HcCCHHHHHHHHHHHHH-c--------------CCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHH
Q 006012 205 RNDDLEKALNLMSKMRQ-D--------------GYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLN 269 (664)
Q Consensus 205 ~~g~~~~A~~~~~~m~~-~--------------g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~ 269 (664)
+.|++++|+.+|+++.. . |.+++..+|..++.++.+.|+.++ |..+|+.+.+.+ +.+...+.
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~~-p~~~~~~~ 238 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR--AKECYKEALMVD-AKCYEAFD 238 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHC-TTCHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhC-chhhHHHH
Confidence 99999999999995322 1 223457899999999999999855 559999998764 34566777
Q ss_pred HHHHHHHHcCCHHHHHH--H-HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006012 270 DVIVGFAKAGDASKAMR--F-LGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV 346 (664)
Q Consensus 270 ~li~~~~~~g~~~~A~~--~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 346 (664)
.+...+...++.+.+.. + +..+...+......+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+|.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 77665554433333222 1 455555444555667888899999999999999999999876 579999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012 347 KMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQ 426 (664)
Q Consensus 347 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 426 (664)
+.|++++|.++|+++.+.+.. +..+++.++.+|.+.|++++|..+++++.+.. +.+..+|+.++..|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999999987644 78889999999999999999999999998654 5678999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006012 427 VLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY 506 (664)
Q Consensus 427 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 506 (664)
+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+..
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999998754 4578899999999999999999999999999875 4578899999999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHH
Q 006012 507 FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ----GLLPN--VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFR 580 (664)
Q Consensus 507 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~ 580 (664)
+.+..+|+.++..|.+.|++++|.++++++.+. +..|+ ..+|..++.+|.+.|++++|++.++
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~----------- 540 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN----------- 540 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH-----------
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH-----------
Confidence 568999999999999999999999999999876 66787 7899999999999999999988854
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 006012 581 VMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALI 637 (664)
Q Consensus 581 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~a~~ 637 (664)
++.+.+ ..+..+|..+..+|.+.|++++|.++++++.+ +.| +...+..+..+|.
T Consensus 541 ~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 541 QGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTC
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHh
Confidence 444322 23788999999999999999999999999998 445 5667777766553
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.5e-29 Score=269.38 Aligned_cols=202 Identities=15% Similarity=0.213 Sum_probs=123.0
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------HHHHHH
Q 006012 427 VLKEMKSSGVEPDT-HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR---------YDRAEE 496 (664)
Q Consensus 427 ~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~~A~~ 496 (664)
+.+++.+.+....+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++|.+
T Consensus 12 L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~ 91 (501)
T 4g26_A 12 LSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFD 91 (501)
T ss_dssp ------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHH
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHH
Confidence 33444444433322 23455555555556666666666665555555666666666655554433 456666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHH
Q 006012 497 LFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAV 576 (664)
Q Consensus 497 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~ 576 (664)
+|++|.+.|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..||+++|.+|++.|++++|.++
T Consensus 92 lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l--------- 162 (501)
T 4g26_A 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV--------- 162 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH---------
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH---------
Confidence 66666666666666666666666666666666666666666666666767777777777766666665554
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012 577 NAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRV 639 (664)
Q Consensus 577 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~ 639 (664)
|++|.+.|+.||..||++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|...
T Consensus 163 --~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 163 --DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp --HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred --HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 5566666677777777777777777777777777777777666777777777666666553
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=5e-29 Score=265.32 Aligned_cols=213 Identities=16% Similarity=0.180 Sum_probs=111.1
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 319 AEAVFEELKESGLKPRT-KAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEME 397 (664)
Q Consensus 319 A~~l~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 397 (664)
+..+.+++.+.+..... ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 33444444444443322 235555566666666666666666666556666666666666555544431100
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012 398 VSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTIT 477 (664)
Q Consensus 398 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 477 (664)
.+.+.+++|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 81 ------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp ------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 01112455555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012 478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQ 557 (664)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 557 (664)
||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555554
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=5.6e-25 Score=229.32 Aligned_cols=382 Identities=14% Similarity=0.099 Sum_probs=287.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 006012 199 LISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKA 278 (664)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~ 278 (664)
+...+.+.|++++|+..++++.+.. |+. ...+..+...+...
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~------------------------------------~~~~~~l~~~~~~~ 46 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDN------------------------------------TGVLLLLSSIHFQC 46 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTC------------------------------------HHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCC------------------------------------HHHHHHHHHHHHHc
Confidence 3456778888888888888877652 332 23334444556677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012 279 GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVV 358 (664)
Q Consensus 279 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 358 (664)
|++++|...++...+.. +.+..+|..+...+.+.|++++|.+.|+++.+... .+..+|..+..++.+.|++++|.+.+
T Consensus 47 ~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 124 (388)
T 1w3b_A 47 RRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAY 124 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77888888777776643 45677788888888888888888888888776532 24567778888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006012 359 SEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEP 438 (664)
Q Consensus 359 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 438 (664)
+++.+.... +...+..+...+...|++++|.+.|+++.... +.+..+|..+...+...|++++|...|+++.+.+ +.
T Consensus 125 ~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 201 (388)
T 1w3b_A 125 VSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PN 201 (388)
T ss_dssp HHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 887765432 45566777777777888888888888887654 3456778888888888888888888888887754 44
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 439 DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMIN 518 (664)
Q Consensus 439 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 518 (664)
+...+..+...+...|++++|...+++..+.. +.+..++..+..+|.+.|++++|.+.|+++.+.+ +.+..+|..+..
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 279 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLAN 279 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 56778888888888888888888888887654 3357788888888888899999999988888875 446778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 006012 519 LLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSL 597 (664)
Q Consensus 519 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l 597 (664)
.+.+.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|++.++ ++.+ ..| +..+|..+
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~-----------~al~--~~p~~~~~~~~l 345 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYR-----------KALE--VFPEFAAAHSNL 345 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHH-----------HHTT--SCTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHH-----------HHHh--cCCCcHHHHHHH
Confidence 8888899999999998888763 3477888888888999988888877643 3333 234 46688889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 006012 598 INAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDK 641 (664)
Q Consensus 598 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~a~~~~g~ 641 (664)
..+|.+.|++++|+..++++.+ +.| +...|..+...+.+.|+
T Consensus 346 ~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999987 445 56777778777766653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.6e-25 Score=229.97 Aligned_cols=373 Identities=12% Similarity=0.043 Sum_probs=247.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALN 214 (664)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 214 (664)
..|+++.|.+.+..+.+.. |.+...+..+...+.+.|++++|... ....+.+..+|..+...|.+.|++++|+.
T Consensus 11 ~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4578888888888888776 66667777788888888888888766 34456677888888888888888888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006012 215 LMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV 294 (664)
Q Consensus 215 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 294 (664)
.|+++.+.. |+ +...|..+..++.+.|++++|.+.|+++.+.
T Consensus 89 ~~~~al~~~--p~------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (388)
T 1w3b_A 89 HYRHALRLK--PD------------------------------------FIDGYINLAAALVAAGDMEGAVQAYVSALQY 130 (388)
T ss_dssp HHHHHHHHC--TT------------------------------------CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHcC--cc------------------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888887642 32 2333444555555556666666666655553
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012 295 GLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYS 374 (664)
Q Consensus 295 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 374 (664)
. +.+...+..+...+...|++++|.+.|+++.+... .+..+|+.+...+...|++++|...|+++.+.+.. +...|.
T Consensus 131 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 207 (388)
T 1w3b_A 131 N-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYI 207 (388)
T ss_dssp C-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHH
Confidence 2 22344555566666666666666666666665422 24556666666666666666666666666654322 455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 006012 375 LLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYN 454 (664)
Q Consensus 375 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 454 (664)
.+...+...|++++|...+++..... +.+..++..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+.+.|
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC
Confidence 66666666666666666666665543 2345666666666777777777777777666653 334566777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006012 455 CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLG 534 (664)
Q Consensus 455 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 534 (664)
++++|...++++.+.. +.+..+++.+...+.+.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|.+.++
T Consensus 286 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 286 SVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777776653 4466677777777777777777777777777654 4456677777777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012 535 NMRAQGLLPNVVTYTTLVDIYGQSG 559 (664)
Q Consensus 535 ~m~~~~~~p~~~~~~~li~~~~~~g 559 (664)
++.+... -+...|..+...+.+.|
T Consensus 364 ~a~~~~p-~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 364 EAIRISP-TFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTCT-TCHHHHHHHHHHHHHTC
T ss_pred HHHhhCC-CCHHHHHhHHHHHHHcc
Confidence 7776432 14566666666655544
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7e-22 Score=213.72 Aligned_cols=437 Identities=11% Similarity=0.030 Sum_probs=296.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006012 193 PLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVI 272 (664)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li 272 (664)
...|..+...+.+.|++++|+..|+++.+.+ |+...|..+..++.+.|+++. +...++.+.+.. +.+...+..+.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~-p~~~~~~~~l~ 80 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKK--VVEMSTKALELK-PDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHH--HHHHHHHHhccC-hHHHHHHHHHH
Confidence 3467778888888899999999998888764 566666666666666666643 335566555543 44556677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012 273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLK 352 (664)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 352 (664)
.+|.+.|++++|...|+.+.+.+ +++......++..+.+......+.+.+..+...+..|+...++.-...........
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 77777777777777777776654 33444444444444443333333333333222221121111111111111111111
Q ss_pred HHHHHHHHHHHCCC---------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----cCC--------CCCHHH
Q 006012 353 DAEFVVSEMERSGV---------LPDEHTYSLLIDAYAN---AGRWESARIVLKEMEV-----SHA--------KPNSFI 407 (664)
Q Consensus 353 ~a~~~~~~m~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~~~--------~~~~~~ 407 (664)
....+...+..... ..+...+..+...+.. .|++++|..+|+++.. ... +.+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 11111111111110 1124445445554554 7999999999999887 311 223567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006012 408 YSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK 487 (664)
Q Consensus 408 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 487 (664)
+..+...+...|++++|...++.+.+.. |+..++..+...+...|++++|...++.+.+.. +.+...+..+...|..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 7888889999999999999999988764 338888899999999999999999999998765 3467788899999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006012 488 CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIEC 567 (664)
Q Consensus 488 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 567 (664)
.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+..++..+...|.+.|++++|...
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998876 44677888999999999999999999999988632 2567889999999999999999988
Q ss_pred HhhhHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012 568 LEGLSDQAVNAFRVMRTDGLKPS----NLALNSLINAFGE---DQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVD 640 (664)
Q Consensus 568 ~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g 640 (664)
++...+. ... .++ ...|..+..++.. .|++++|+..++++.+.. +.+..++..++.++.+.|
T Consensus 395 ~~~a~~~-------~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 395 YDLAIEL-------ENK---LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp HHHHHHH-------HHT---SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHh-------hhc---cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 6533221 111 122 3488899999999 999999999999998842 446788899999999999
Q ss_pred CHhHHHHHHHH
Q 006012 641 KFHKVFSSYLF 651 (664)
Q Consensus 641 ~~~~A~~~~~~ 651 (664)
++++|.+.|+.
T Consensus 464 ~~~~A~~~~~~ 474 (514)
T 2gw1_A 464 DIDEAITLFEE 474 (514)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999999883
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.4e-20 Score=199.95 Aligned_cols=360 Identities=13% Similarity=0.101 Sum_probs=279.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006012 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL 341 (664)
Q Consensus 262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 341 (664)
+.+...+..+...|.+.|++++|+++|+.+.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.+. .+...+..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence 4567788889999999999999999999988753 45788899999999999999999999999988653 367888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCCHH
Q 006012 342 LKGYVKMGYLKDAEFVVSEMERSGVLPDE---HTYSLL------------IDAYANAGRWESARIVLKEMEVSHAKPNSF 406 (664)
Q Consensus 342 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~ 406 (664)
..+|.+.|++++|.+.|+++.+.... +. ..+..+ ...+.+.|++++|...|+++.... +.+..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 99999999999999999999876422 33 555555 344888999999999999998764 45788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----
Q 006012 407 IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTL----- 481 (664)
Q Consensus 407 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l----- 481 (664)
.+..+..+|.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 89999999999999999999999987754 5578899999999999999999999999998754 2345555554
Q ss_pred -------HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012 482 -------IDCHFKCGRYDRAEELFEEMQERGYFPC-----TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYT 549 (664)
Q Consensus 482 -------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 549 (664)
...|.+.|++++|...|+++.+.. |+ ...|..+...+.+.|++++|.+.++++.+.. +.+..++.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 788999999999999999998864 44 4478888899999999999999999998753 23688999
Q ss_pred HHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHH------------HHHhcC-----CHHHHH
Q 006012 550 TLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLIN------------AFGEDQ-----RDAEAF 611 (664)
Q Consensus 550 ~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~------------~~~~~g-----~~~~A~ 611 (664)
.+..+|.+.|++++|.+.++ ++.+ +.|+ ...+..+.. .|...| +.+++.
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~-----------~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~ 400 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYE-----------TAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-----------HHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred HHHHHHHHhcCHHHHHHHHH-----------HHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence 99999999999999888754 3333 3454 445555552 233344 567778
Q ss_pred HHHHHH-HHCCCCCC----H-------HHHHHHHHHHHhcCCHhHH
Q 006012 612 AVLQYM-KENGLKPD----V-------VTYTTLMKALIRVDKFHKV 645 (664)
Q Consensus 612 ~~~~~m-~~~g~~p~----~-------~~~~~l~~a~~~~g~~~~A 645 (664)
+.++++ .+ ..|| . ..+..+..+|...++.+++
T Consensus 401 ~~y~~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 401 KAYRKLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 888763 33 2333 1 2555666666666655543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.4e-20 Score=199.87 Aligned_cols=360 Identities=10% Similarity=0.007 Sum_probs=233.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006012 194 LTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIV 273 (664)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~ 273 (664)
..|..++..+.+.|++++|+.+|+++.+.. +.+..+|..+...+...|+.+. +...++.+.+.+ +.+...+..+..
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~--A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKA--ALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHH--HHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 344444444444444444444444444331 2233333344444444443322 223333333322 334566677777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 006012 274 GFAKAGDASKAMRFLGMAQGVGLSPKT---ATYAAV------------ITALSNSGRTIEAEAVFEELKESGLKPRTKAY 338 (664)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 338 (664)
+|.+.|++++|.+.|+++.+.. +.+. ..+..+ ...+.+.|++++|.+.|+++.+... .+...+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHH
Confidence 7888888888888888877653 2233 455544 3447788888888888888877533 367788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH-------
Q 006012 339 NALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRI------- 411 (664)
Q Consensus 339 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~l------- 411 (664)
..+..+|.+.|++++|.+.++++.+... .+..+|..+...|...|++++|+..|+++.... +.+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence 8888888888888888888888876532 367888888888888888888888888887653 2344444444
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012 412 -----LAGYRDRGEWQRTFQVLKEMKSSGVEPD-----THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTL 481 (664)
Q Consensus 412 -----l~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 481 (664)
...+.+.|++++|...|+++.+.. |+ ...+..+...+.+.|++++|...++++.+.. +.+...|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 778888899999999998887753 33 4477788888889999999999998887653 3467888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHhcC-----CHHHHHHHHHH-HHHCCC--
Q 006012 482 IDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINL------------LGEQE-----RWEDVKRLLGN-MRAQGL-- 541 (664)
Q Consensus 482 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~------------~~~~g-----~~~~a~~~~~~-m~~~~~-- 541 (664)
..+|.+.|++++|...|+++.+.. +-+...+..+..+ |...| +.+++.+.+++ ..+...
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 889999999999999999888764 3345566555532 33333 45666777776 333211
Q ss_pred CCCH-------HHHHHHHHHHHhcCChHHHH
Q 006012 542 LPNV-------VTYTTLVDIYGQSGRFDDAI 565 (664)
Q Consensus 542 ~p~~-------~~~~~li~~~~~~g~~~~A~ 565 (664)
.|+. ..+..+..+|...|+.+++.
T Consensus 415 ~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 415 FQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 1222 25666677777777666543
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.3e-20 Score=201.71 Aligned_cols=434 Identities=11% Similarity=0.008 Sum_probs=292.4
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCH
Q 006012 134 KNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDL 209 (664)
Q Consensus 134 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~ 209 (664)
...+...|+++.|...+..+++.+ | +..++..+..+|.+.|++++|... ....+.+..+|..+..+|.+.|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhH
Confidence 334446678888888888888876 3 467788888888888888888776 334566777888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012 210 EKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLG 289 (664)
Q Consensus 210 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~ 289 (664)
++|+..|+++.+.+ +++......++..+.+.. ....+.+.+.
T Consensus 90 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~l~ 131 (514)
T 2gw1_A 90 ADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQ-------------------------------------AMSKLKEKFG 131 (514)
T ss_dssp HHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHH-------------------------------------HHHHHTTC--
T ss_pred HHHHHHHHHHHhcC-CCccchHHHHHHHHHHHH-------------------------------------HHHHHHHHHH
Confidence 88888888888765 334444433333222211 1111111111
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHH
Q 006012 290 MAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGL---------KPRTKAYNALLKGYVK---MGYLKDAEFV 357 (664)
Q Consensus 290 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~---------~p~~~~~~~li~~~~~---~g~~~~a~~~ 357 (664)
.+...+..|+...+..................+...+..... +.+...+..+...+.. .|++++|...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 211 (514)
T 2gw1_A 132 DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211 (514)
T ss_dssp -------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHH
T ss_pred HHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHH
Confidence 110000001100000000000000111111111111111100 1124444444444444 7888888888
Q ss_pred HHHHHH-----CCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006012 358 VSEMER-----SGVL--------PDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRT 424 (664)
Q Consensus 358 ~~~m~~-----~g~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 424 (664)
++++.+ ..-. .+..++..+...+...|++++|...++++...... ...+..+...+...|++++|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A 289 (514)
T 2gw1_A 212 FTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEY 289 (514)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTG
T ss_pred HHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHH
Confidence 888776 3111 13567778888888999999999999988876533 77888888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006012 425 FQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER 504 (664)
Q Consensus 425 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (664)
...++.+.+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|...++++.+.
T Consensus 290 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 290 YNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp GGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999888764 4567788888999999999999999999998765 345678888999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChHHHHHHHhhhHHHHH
Q 006012 505 GYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PN----VVTYTTLVDIYGQ---SGRFDDAIECLEGLSDQAV 576 (664)
Q Consensus 505 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~a~ 576 (664)
. +.+...+..+...+...|++++|.+.+.++.+.... ++ ..++..+...|.+ .|++++|++.++.
T Consensus 368 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~------ 440 (514)
T 2gw1_A 368 F-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK------ 440 (514)
T ss_dssp S-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHH------
T ss_pred c-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH------
Confidence 5 446778889999999999999999999998875221 12 3488999999999 9999999887653
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006012 577 NAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVV 627 (664)
Q Consensus 577 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 627 (664)
+.... ..+..+|..+..+|.+.|++++|...++++.+ +.|+..
T Consensus 441 -----a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 441 -----ASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTME 483 (514)
T ss_dssp -----HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHH
T ss_pred -----HHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccH
Confidence 22211 23567889999999999999999999999998 456543
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=1.5e-19 Score=196.56 Aligned_cols=430 Identities=12% Similarity=0.045 Sum_probs=292.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006012 193 PLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVI 272 (664)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li 272 (664)
...|..+...+.+.|++++|+..|+++.+.. +.+...|..+..++.+.|+++. +...++.+.+.. +.+...+..+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEK--VIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHH--HHHHHHHHHhcC-CchHHHHHHHH
Confidence 4578888999999999999999999998864 3455666667777777777644 346666665543 44566777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHH
Q 006012 273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES------GLKPRTKAYNALLKGYV 346 (664)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------~~~p~~~~~~~li~~~~ 346 (664)
.+|...|++++|++.|+. ... .|+ .....+..+...+...+|...++++... ...|+.. .+..+.
T Consensus 101 ~~~~~~g~~~~A~~~~~~-~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~ 171 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSV-LSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFF 171 (537)
T ss_dssp HHHHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH-Hhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHH
Confidence 777777777777777753 221 222 1222244455555566677777766542 1222322 233334
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH--------HcCCHHHHHHHHHHHHhcCCCCC-------HHHHHH
Q 006012 347 KMGYLKDAEFVVSEMERSGVLPDE-HTYSLLIDAYA--------NAGRWESARIVLKEMEVSHAKPN-------SFIYSR 410 (664)
Q Consensus 347 ~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~--------~~g~~~~A~~l~~~m~~~~~~~~-------~~~~~~ 410 (664)
...+.+.+...+...... .+.. .....+...+. ..|++++|..+++++.+... .+ ..++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCY 248 (537)
T ss_dssp HTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHH
Confidence 444444444333322221 1111 12222222222 12578899999998886542 22 235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006012 411 ILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR 490 (664)
Q Consensus 411 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 490 (664)
+...+...|++++|...++.+.+. .|+...+..+...+...|++++|...++++.+.. +.+..+|..+...|...|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 777888899999999999998876 4558888888999999999999999999988764 3467889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhh
Q 006012 491 YDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEG 570 (664)
Q Consensus 491 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 570 (664)
+++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+..++..+...|...|++++|++.++.
T Consensus 326 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999998875 44567888899999999999999999999988642 3567888899999999999999988763
Q ss_pred hHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012 571 LSDQAVNAFRVMRTD-GLKPSNLALNSLINAFGED----------QRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRV 639 (664)
Q Consensus 571 ~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~ 639 (664)
..+. . ... ........+..+..++... |++++|+..++++.+.. +.+...+..++.++.+.
T Consensus 404 a~~~----~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~ 475 (537)
T 3fp2_A 404 AKRL----E---EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQM 475 (537)
T ss_dssp HHHH----H---HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHc----C---CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 3221 1 121 1112223345556777777 99999999999998842 44678888999999999
Q ss_pred CCHhHHHHHHHH
Q 006012 640 DKFHKVFSSYLF 651 (664)
Q Consensus 640 g~~~~A~~~~~~ 651 (664)
|++++|.+.|+.
T Consensus 476 g~~~~A~~~~~~ 487 (537)
T 3fp2_A 476 EKIDEAIELFED 487 (537)
T ss_dssp TCHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 999999998883
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=1.4e-18 Score=188.98 Aligned_cols=397 Identities=12% Similarity=0.074 Sum_probs=269.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006012 192 TPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDV 271 (664)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~l 271 (664)
++.+|..+..+|.+.|++++|+..|+++.+.+ +.+..++..+...+...|+.+.+ ...|+.+ .. +....+..
T Consensus 58 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A--~~~~~~~-~~----~~~~~~~~ 129 (537)
T 3fp2_A 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDA--MFDLSVL-SL----NGDFDGAS 129 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH--HHHHHHH-C-------------
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHH--HHHHHHH-hc----CCCCChHH
Confidence 34444444444444555555555555444432 22333444444444444444322 2333211 11 11112233
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 006012 272 IVGFAKAGDASKAMRFLGMAQGVG------LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTK-AYNALLKG 344 (664)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~li~~ 344 (664)
+..+...+...+|...++.+.... ..|+. ..+..+....+.+.+...+...... .+... ....+...
T Consensus 130 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~ 203 (537)
T 3fp2_A 130 IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRL 203 (537)
T ss_dssp --CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHH
Confidence 556666777889999999986531 22333 3444555666666665554443321 22222 22223222
Q ss_pred HH--------hcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 006012 345 YV--------KMGYLKDAEFVVSEMERSGVLPD-------EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYS 409 (664)
Q Consensus 345 ~~--------~~g~~~~a~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~ 409 (664)
+. ..|++++|..+++++.+.... + ..++..+...+...|++++|...+++..... |+...+.
T Consensus 204 ~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 280 (537)
T 3fp2_A 204 YSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYI 280 (537)
T ss_dssp HTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHH
Confidence 22 225789999999999876433 2 2356777788889999999999999998864 5588899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006012 410 RILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCG 489 (664)
Q Consensus 410 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 489 (664)
.+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.. +.+...|..+...|.+.|
T Consensus 281 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 358 (537)
T 3fp2_A 281 FLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQG 358 (537)
T ss_dssp HHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999988764 4578899999999999999999999999999765 345678999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhc------
Q 006012 490 RYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGL-----LPNVVTYTTLVDIYGQS------ 558 (664)
Q Consensus 490 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~------ 558 (664)
++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+... ......+..+...+...
T Consensus 359 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 437 (537)
T 3fp2_A 359 KFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437 (537)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccch
Confidence 9999999999999875 55678899999999999999999999999876421 11223345556677777
Q ss_pred ----CChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 559 ----GRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKEN 620 (664)
Q Consensus 559 ----g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 620 (664)
|++++|+..++ +..... ..+...|..+..+|.+.|++++|.+.++++.+.
T Consensus 438 ~~~~~~~~~A~~~~~-----------~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLT-----------KACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp -CCHHHHHHHHHHHH-----------HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHH-----------HHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88888877754 333321 235678999999999999999999999999983
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=2.8e-17 Score=168.25 Aligned_cols=332 Identities=13% Similarity=0.052 Sum_probs=229.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006012 264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLK 343 (664)
Q Consensus 264 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 343 (664)
|+..+..+...+...|++++|++.|+.+.+.. +.+..++..+...+...|++++|...|+++.+... .+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 35567777788888888888888888877653 44577788888888888888888888888777532 25677777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 006012 344 GYVKMGYLKDAEFVVSEMERSGVL--PDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEW 421 (664)
Q Consensus 344 ~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 421 (664)
.+...|++++|...++++.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 888888888888888887765320 12333333321110 01122334566677777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012 422 QRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEM 501 (664)
Q Consensus 422 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 501 (664)
++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...|++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777766543 4456677777777777777777777777777654 345677777777777788888888888777
Q ss_pred HHCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHH
Q 006012 502 QERGYFPCTTTYN------------IMINLLGEQERWEDVKRLLGNMRAQGLLPNV----VTYTTLVDIYGQSGRFDDAI 565 (664)
Q Consensus 502 ~~~~~~p~~~t~~------------~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~ 565 (664)
.+.. +.+...+. .+...+.+.|++++|...++++.+.... +. ..+..+..+|.+.|++++|+
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 7654 33333333 2356688899999999999998885432 23 33556788899999999998
Q ss_pred HHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 006012 566 ECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD-VVTYTTLMKALIRV 639 (664)
Q Consensus 566 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~a~~~~ 639 (664)
+.++.. ... .| +..+|..+..+|...|++++|.+.++++.+ +.|+ ...+..+..+....
T Consensus 293 ~~~~~~-----------~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 293 RICSEV-----------LQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHH-----------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHH-----------HHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHH
Confidence 886532 221 34 577899999999999999999999999998 4554 56666666665543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=3.5e-17 Score=167.52 Aligned_cols=321 Identities=12% Similarity=0.038 Sum_probs=217.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006012 192 TPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDV 271 (664)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~l 271 (664)
++..|..+...+.+.|++++|+..|+++.+.. |+ +...+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~------------------------------------~~~~~~~~ 43 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PD------------------------------------NYIAYYRR 43 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------------------------------------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cc------------------------------------cHHHHHHH
Confidence 45678889999999999999999999988753 22 22344445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHH--------
Q 006012 272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLK--PRTKAYNAL-------- 341 (664)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p~~~~~~~l-------- 341 (664)
...|...|++++|++.|+++.+.. +.+...|..+...+.+.|++++|...|+++.+.... .+...+..+
T Consensus 44 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (359)
T 3ieg_A 44 ATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHH
Confidence 555556666666666666665542 234556666666666666666666666666553210 122333333
Q ss_pred ----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 006012 342 ----LKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRD 417 (664)
Q Consensus 342 ----i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~ 417 (664)
...+...|++++|.+.++++.+... .+...+..+...|...|++++|...+++..... +.+..++..+...+..
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4666777777777777777766543 256677777777777777777777777776653 4466677777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH------------HHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HHHHHH
Q 006012 418 RGEWQRTFQVLKEMKSSGVEPDTHFYN------------VMIDTFGKYNCLHHAMAAFDRMLSEGIEPDT----ITWNTL 481 (664)
Q Consensus 418 ~g~~~~a~~~~~~m~~~g~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~l 481 (664)
.|++++|...++...+.. +.+...+. .+...+.+.|++++|...++++.+.... +. ..+..+
T Consensus 201 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l 278 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERI 278 (359)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHH
Confidence 777777777777776543 22333322 2355678888999999999888875422 22 234557
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012 482 IDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQ 557 (664)
Q Consensus 482 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 557 (664)
..+|.+.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+..+...
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHH
Confidence 778888999999999999988875 557888888999999999999999999999876422 45556555555443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=5.5e-17 Score=164.15 Aligned_cols=294 Identities=11% Similarity=-0.031 Sum_probs=247.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006012 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL 341 (664)
Q Consensus 262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 341 (664)
+.+...+..+...+...|++++|+++|+.+.+.. +.+...+..++..+.+.|++++|..+++++.+... .+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHH
Confidence 4556677788888999999999999999998764 44566777888999999999999999999988643 367888899
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 006012 342 LKGYVKMG-YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE 420 (664)
Q Consensus 342 i~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 420 (664)
...+...| ++++|.+.++++.+.... +...|..+...|...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 99999999 999999999999987543 67889999999999999999999999998765 3355677779999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCCHH
Q 006012 421 WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG--------IEPDTITWNTLIDCHFKCGRYD 492 (664)
Q Consensus 421 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~~~~~~~~~li~~~~~~g~~~ 492 (664)
+++|...++++.+.. +.+..++..+...+...|++++|...+++..+.. .+.....+..+...|.+.|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999998765 5578899999999999999999999999988631 1334678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChH
Q 006012 493 RAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIY-GQSGRFD 562 (664)
Q Consensus 493 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~ 562 (664)
+|...+++..+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+..++ ...|+.+
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCchh
Confidence 9999999998875 55778899999999999999999999999987642 2677888888887 4555543
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=1.6e-14 Score=154.92 Aligned_cols=366 Identities=12% Similarity=0.045 Sum_probs=255.3
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHH
Q 006012 192 TPLTYNALISACAR----NDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQL 267 (664)
Q Consensus 192 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~ 267 (664)
++.++..|...|.. .+++++|+..|++..+.| +. ..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~-------------------------------------~a 77 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YT-------------------------------------PA 77 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-------------------------------------HH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CH-------------------------------------HH
Confidence 55566666666666 778888888887776643 11 22
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 006012 268 LNDVIVGFAK----AGDASKAMRFLGMAQGVGLSPKTATYAAVITALSN----SGRTIEAEAVFEELKESGLKPRTKAYN 339 (664)
Q Consensus 268 ~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~ 339 (664)
+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+.
T Consensus 78 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 151 (490)
T 2xm6_A 78 EYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQ 151 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 2333444444 567777777777777654 55666667777776 677778888777777654 456666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 006012 340 ALLKGYVK----MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN----AGRWESARIVLKEMEVSHAKPNSFIYSRI 411 (664)
Q Consensus 340 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~~~~l 411 (664)
.|...|.. .++.++|.+.|++..+.| +...+..+...|.. .++.++|.+.|++..+.+ +...+..+
T Consensus 152 ~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 225 (490)
T 2xm6_A 152 SMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHL 225 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 67777766 667888888888777764 66777777777777 778888888888777653 55666667
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 412 LAGYRD----RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK----YNCLHHAMAAFDRMLSEGIEPDTITWNTLID 483 (664)
Q Consensus 412 l~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 483 (664)
...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|...|++..+.| +...+..+..
T Consensus 226 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~ 299 (490)
T 2xm6_A 226 ADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAH 299 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 777765 678888888888877654 45566666666666 788888888888887654 4566677777
Q ss_pred HHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 484 CHFKC-----GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE---RWEDVKRLLGNMRAQGLLPNVVTYTTLVDIY 555 (664)
Q Consensus 484 ~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 555 (664)
.|... +++++|+..|++..+.+ +...+..+...|...| +.++|.+.+++..+.| +...+..|...|
T Consensus 300 ~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 373 (490)
T 2xm6_A 300 LYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNAL 373 (490)
T ss_dssp HHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 77776 78888888888888875 4566777777776655 6788888888888763 677788888888
Q ss_pred Hh----cCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-C-C
Q 006012 556 GQ----SGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE----DQRDAEAFAVLQYMKENGLK-P-D 625 (664)
Q Consensus 556 ~~----~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p-~ 625 (664)
.. .+++++|++.+ ++..+.| +...+..|...|.. .+++++|..+|++..+.|.. | +
T Consensus 374 ~~g~g~~~~~~~A~~~~-----------~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~ 439 (490)
T 2xm6_A 374 LQGKGVKKDEQQAAIWM-----------RKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT 439 (490)
T ss_dssp HHTSSSCCCHHHHHHHH-----------HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH
T ss_pred HcCCCCCCCHHHHHHHH-----------HHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC
Confidence 87 77777777664 3444433 46677778888877 78889999998888886532 2 3
Q ss_pred HHHHHHHHHH
Q 006012 626 VVTYTTLMKA 635 (664)
Q Consensus 626 ~~~~~~l~~a 635 (664)
......+...
T Consensus 440 ~~a~~~l~~~ 449 (490)
T 2xm6_A 440 ENRNITEKKL 449 (490)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHHhc
Confidence 3344444443
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=2.2e-14 Score=153.93 Aligned_cols=349 Identities=15% Similarity=0.092 Sum_probs=296.7
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCC
Q 006012 263 LDGQLLNDVIVGFAK----AGDASKAMRFLGMAQGVGLSPKTATYAAVITALSN----SGRTIEAEAVFEELKESGLKPR 334 (664)
Q Consensus 263 ~d~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~ 334 (664)
-+...+..+...|.. .+++++|++.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 366777778888888 899999999999998864 67888899999998 999999999999998865 6
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHH
Q 006012 335 TKAYNALLKGYVK----MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN----AGRWESARIVLKEMEVSHAKPNSF 406 (664)
Q Consensus 335 ~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~ 406 (664)
...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.+ +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 6778888888988 789999999999998875 67888889999988 889999999999998864 678
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006012 407 IYSRILAGYRD----RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK----YNCLHHAMAAFDRMLSEGIEPDTITW 478 (664)
Q Consensus 407 ~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~ 478 (664)
.+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .++.++|...|++..+.| +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 88889888888 899999999999998865 56778888888875 889999999999998764 56677
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012 479 NTLIDCHFK----CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQ-----ERWEDVKRLLGNMRAQGLLPNVVTYT 549 (664)
Q Consensus 479 ~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~ 549 (664)
..+...|.. .+++++|++.|++..+.| +...+..+...|... ++.++|...+++..+.| +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 778888888 899999999999998876 566778888888877 89999999999999875 567788
Q ss_pred HHHHHHHhcC---ChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 006012 550 TLVDIYGQSG---RFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE----DQRDAEAFAVLQYMKENGL 622 (664)
Q Consensus 550 ~li~~~~~~g---~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 622 (664)
.+...|...| ++++|++ .|++..+. .+...+..|...|.. .+++++|+.++++..+.|
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~-----------~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~- 397 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVE-----------WFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG- 397 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHH-----------HHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCCCcccHHHHHH-----------HHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence 8888888766 4444444 46666654 367788899999988 899999999999999865
Q ss_pred CCCHHHHHHHHHHHHh----cCCHhHHHHHHHHH
Q 006012 623 KPDVVTYTTLMKALIR----VDKFHKVFSSYLFF 652 (664)
Q Consensus 623 ~p~~~~~~~l~~a~~~----~g~~~~A~~~~~~~ 652 (664)
+...+..|...|.+ .+++++|...|+.-
T Consensus 398 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 398 --LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 57888899999998 89999999999844
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.4e-16 Score=161.23 Aligned_cols=290 Identities=8% Similarity=-0.040 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 006012 335 TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAG 414 (664)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~ 414 (664)
...+..+...+...|++++|.++++++.+.... +...+..++..+...|++++|..+++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 334455555556666666666666666554322 33444455555666666666666666665543 2345556666666
Q ss_pred HHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012 415 YRDRG-EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR 493 (664)
Q Consensus 415 ~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 493 (664)
+...| ++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 66666 6666776666666543 3345667777777777777777777777777654 2345566667788888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChHHHH
Q 006012 494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG--------LLPNVVTYTTLVDIYGQSGRFDDAI 565 (664)
Q Consensus 494 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~ 565 (664)
|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. ...+..++..+..+|.+.|++++|+
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 888888887765 5567788888888888888888888888887631 1334678999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HhcCCHh
Q 006012 566 ECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKAL-IRVDKFH 643 (664)
Q Consensus 566 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~a~-~~~g~~~ 643 (664)
+.++.. .+.. ..+...|..+..+|.+.|++++|.+.++++.+ +.| +...+..+..++ ...|+.+
T Consensus 257 ~~~~~a-----------~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 257 DYHRQA-----------LVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHH-----------HHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHH-----------HhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchh
Confidence 886532 2211 22567899999999999999999999999987 445 678888888888 4556543
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=8e-17 Score=165.90 Aligned_cols=291 Identities=11% Similarity=-0.031 Sum_probs=215.2
Q ss_pred HHHcCCHHHHHH-HHHHHHhCCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006012 275 FAKAGDASKAMR-FLGMAQGVGL-SP--KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY 350 (664)
Q Consensus 275 ~~~~g~~~~A~~-~~~~~~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 350 (664)
+...|++++|++ .|++...... .| +...+..+...+.+.|++++|...|+++.+... .+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcC
Confidence 334467777777 7765544321 11 245577777888888888888888888877543 366777788888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH---------------HHHHH
Q 006012 351 LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSR---------------ILAGY 415 (664)
Q Consensus 351 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~---------------ll~~~ 415 (664)
+++|...++++.+... .+..++..+...|...|++++|...++++...... +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 8888888888776543 26777888888888888888888888887765422 1111111 23344
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006012 416 RDRGEWQRTFQVLKEMKSSGVE-PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRA 494 (664)
Q Consensus 416 ~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 494 (664)
...|++++|...++++.+.... ++..++..+...+.+.|++++|...++++.+.. +.+...|..+...|.+.|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 4889999999999998876422 158889999999999999999999999988764 34678899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCChHHH
Q 006012 495 EELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP----------NVVTYTTLVDIYGQSGRFDDA 564 (664)
Q Consensus 495 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~A 564 (664)
...|+++.+.. +.+...+..+...+.+.|++++|...++++.+..... ...+|..+..+|.+.|++++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998875 5678899999999999999999999999988753221 268999999999999999999
Q ss_pred HHHHhh
Q 006012 565 IECLEG 570 (664)
Q Consensus 565 ~~~~~~ 570 (664)
..++..
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 988763
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=2.6e-14 Score=155.01 Aligned_cols=410 Identities=11% Similarity=0.045 Sum_probs=293.9
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 006012 150 VSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYH 225 (664)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 225 (664)
++..++.+ |.+..+|..++. +.+.|++++|..+ ....|.+...|..++..+.+.|++++|..+|+++... .
T Consensus 2 le~al~~~--P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC--CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 34445554 566777888887 4677888888776 4556778888999999999999999999999999876 3
Q ss_pred CChhhHHHHHHHH-HhcCCCChHH--HHHHHHHHHh-CCCC-CCHHHHHHHHHHHHH---------cCCHHHHHHHHHHH
Q 006012 226 CDFINYSLVIQSL-TRTNKIDSSL--LQKLYKEIEC-DKIE-LDGQLLNDVIVGFAK---------AGDASKAMRFLGMA 291 (664)
Q Consensus 226 p~~~~~~~ll~~~-~~~g~~~~~~--~~~l~~~~~~-~~~~-~d~~~~~~li~~~~~---------~g~~~~A~~~~~~~ 291 (664)
|+...|...+... ...|+.+.+. +.++|+.... .|.. .+...|...+....+ .|++++|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6766666666433 3456665432 3456776654 2433 356788888776655 78999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHH-------------HhcCChHHHHHHHHHHH------HcC---CCCC--------HHHHHHH
Q 006012 292 QGVGLSPKTATYAAVITAL-------------SNSGRTIEAEAVFEELK------ESG---LKPR--------TKAYNAL 341 (664)
Q Consensus 292 ~~~g~~~~~~~~~~li~~~-------------~~~g~~~~A~~l~~~m~------~~~---~~p~--------~~~~~~l 341 (664)
.+.........|....... .+.+++..|..++.++. +.. ++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8731111123444332211 13456777887777632 221 2443 2456655
Q ss_pred HHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHhc
Q 006012 342 LKGYVKM----GYL----KDAEFVVSEMERSGVLPDEHTYSLLIDAYAN-------AGRWE-------SARIVLKEMEVS 399 (664)
Q Consensus 342 i~~~~~~----g~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~ 399 (664)
+...... ++. +.+..+|++...... .+...|..++..+.+ .|+++ +|..+|++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 5443332 232 477788998887533 368889888888876 69987 899999999863
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012 400 HAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPD--THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTIT 477 (664)
Q Consensus 400 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 477 (664)
-.+.+...|..++..+.+.|++++|..+|+.+.+. .|+ ...|...+..+.+.|++++|..+|++..+... .+...
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~ 392 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHV 392 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHH
Confidence 33557889999999999999999999999999986 443 35888899999999999999999999987532 22333
Q ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHH
Q 006012 478 WNTLID-CHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGL-LP--NVVTYTTLVD 553 (664)
Q Consensus 478 ~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p--~~~~~~~li~ 553 (664)
|..... .+...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|++.+..+. .| ....|...+.
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 332222 2346899999999999998875 45688999999999999999999999999998742 22 2558888899
Q ss_pred HHHhcCChHHHHHHHh
Q 006012 554 IYGQSGRFDDAIECLE 569 (664)
Q Consensus 554 ~~~~~g~~~~A~~~~~ 569 (664)
...+.|+.+.+..+..
T Consensus 472 ~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 472 FESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHSSCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 8899999999887754
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=4.2e-14 Score=153.32 Aligned_cols=418 Identities=12% Similarity=0.122 Sum_probs=234.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHH
Q 006012 189 QRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLL 268 (664)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~ 268 (664)
.+.+..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+.+. +..+|+...... |+...|
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~--a~~~~~ral~~~--p~~~lw 82 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDK--VEKLFQRCLMKV--LHIDLW 82 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHH--HHHHHHHHTTTC--CCHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHH--HHHHHHHHHhcC--CChHHH
Confidence 4567889999988 478899999999999988752 3344456566655555555532 345555555442 345555
Q ss_pred HHHHHHH-HHcCCHHHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCC
Q 006012 269 NDVIVGF-AKAGDASKAMR----FLGMAQG-VGLSP-KTATYAAVITALSN---------SGRTIEAEAVFEELKESGLK 332 (664)
Q Consensus 269 ~~li~~~-~~~g~~~~A~~----~~~~~~~-~g~~~-~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~~~~ 332 (664)
...+... ...|+.++|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|++.++....
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~ 162 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI 162 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhh
Confidence 5544322 23344444433 4444432 23222 34445555544433 45555555555555542111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hcC---CCC
Q 006012 333 PRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEME------VSH---AKP 403 (664)
Q Consensus 333 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~~---~~~ 403 (664)
.....|..........|. ..+ ..++. .+.++++.|..+++++. +.. ++|
T Consensus 163 ~~~~~~~~~~~~e~~~~~-~~~-------------------~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI-HLA-------------------KKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHCH-HHH-------------------HHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHHHHhhch-hHH-------------------HHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 011222221111100000 000 00000 01234555555555421 111 233
Q ss_pred C--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cCCHH---
Q 006012 404 N--------SFIYSRILAGYRDR----GEW----QRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK-------YNCLH--- 457 (664)
Q Consensus 404 ~--------~~~~~~ll~~~~~~----g~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~--- 457 (664)
+ ...|...+...... ++. .++..+|++..... +.+...|..+...+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 3 23444444332221 122 35666777766542 4456777777776664 57765
Q ss_pred ----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 006012 458 ----HAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT-TTYNIMINLLGEQERWEDVKRL 532 (664)
Q Consensus 458 ----~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~ 532 (664)
+|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++++.. +.+. ..|..++..+.+.|++++|.++
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~ 378 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMI 378 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHH
Confidence 778888887752223457778888888888888888888888887753 2232 4677777777778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 006012 533 LGNMRAQGLLPNVVTYTTLVDI-YGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEA 610 (664)
Q Consensus 533 ~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A 610 (664)
|++..+... .+...|...+.. +...|++++|..+|+..++ . .| +...|..++..+.+.|+.++|
T Consensus 379 ~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~-----------~--~p~~~~~~~~~~~~~~~~g~~~~A 444 (530)
T 2ooe_A 379 FKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLK-----------K--YGDIPEYVLAYIDYLSHLNEDNNT 444 (530)
T ss_dssp HHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-----------H--HTTCHHHHHHHHHHHTTTTCHHHH
T ss_pred HHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----------H--CCCCHHHHHHHHHHHHhCCCHhhH
Confidence 888876522 123333332222 3357777777777552221 1 13 456778888888888888888
Q ss_pred HHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 611 FAVLQYMKENG-LKPD--VVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 611 ~~~~~~m~~~g-~~p~--~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
..+|++.++.+ ..|+ ...|...+....+.|+.+.+..+++
T Consensus 445 r~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 445 RVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888887742 2332 4477777777777788888877776
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=8.4e-13 Score=148.90 Aligned_cols=446 Identities=12% Similarity=0.148 Sum_probs=249.8
Q ss_pred CChhhHHHHHHHHhcCCCChHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHcccCCHHHHHHhhC----CCC---CCHHH
Q 006012 124 VPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLC-YSYELLYSILIHALGRSEKLYEAFLLSQ----RQR---LTPLT 195 (664)
Q Consensus 124 ~~~~~~~~~l~~l~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~----~~~---~~~~~ 195 (664)
....+|..+|.. +-..-..+.+|.....+. ..++.--...+..|...|.+.+|+.+.+ .+. .+...
T Consensus 951 ~d~~lW~~vl~~------~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~L 1024 (1630)
T 1xi4_A 951 KDPELWGSVLLE------SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNL 1024 (1630)
T ss_pred cCHHHHHHHhcC------CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHH
Confidence 344556555521 112334455554443321 1123344555666666666666665511 111 23345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006012 196 YNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGF 275 (664)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~ 275 (664)
.+.|+....+. +..+..+..++..... ..-+...+...|.+++| ..+|++.. ......+.++.
T Consensus 1025 qnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai~lglyEEA--f~IYkKa~-----~~~~A~~VLie-- 1087 (1630)
T 1xi4_A 1025 QNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAISNELFEEA--FAIFRKFD-----VNTSAVQVLIE-- 1087 (1630)
T ss_pred HHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHHhCCCHHHH--HHHHHHcC-----CHHHHHHHHHH--
Confidence 55555555555 4455555555443211 22244455555655443 35555531 11111222222
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012 276 AKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAE 355 (664)
Q Consensus 276 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 355 (664)
..|++++|.++.++. -+..+|..+..++.+.|++++|.+.|.+. -|...|..++.++.+.|++++|.
T Consensus 1088 -~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAI 1154 (1630)
T 1xi4_A 1088 -HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 1154 (1630)
T ss_pred -HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHH
Confidence 556666666666643 23556667777777777777777776443 25566666777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012 356 FVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSG 435 (664)
Q Consensus 356 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 435 (664)
+.+....+.. ++....+.++.+|++.+++++..... . .++...|..+...|...|++++|..+|...
T Consensus 1155 eyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---- 1221 (1630)
T 1xi4_A 1155 KYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 1221 (1630)
T ss_pred HHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----
Confidence 7776655543 23223334666677766666433222 1 345555666666777777777777777663
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006012 436 VEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNI 515 (664)
Q Consensus 436 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 515 (664)
..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|......+ ..+...+..
T Consensus 1222 -----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLee 1285 (1630)
T 1xi4_A 1222 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 1285 (1630)
T ss_pred -----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHH
Confidence 35666777777777777777776655 24566666666676777766666655432 223455566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChHHHHHHHhhhHHHHHHHHHHHHHCCCCC----
Q 006012 516 MINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQS--GRFDDAIECLEGLSDQAVNAFRVMRTDGLKP---- 589 (664)
Q Consensus 516 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p---- 589 (664)
++..|.+.|.+++|..+++.....+ .-....|+-+...|++. ++..++.+. |..-. .+.|
T Consensus 1286 li~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~-----------f~~ri--ni~k~~r~ 1351 (1630)
T 1xi4_A 1286 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLEL-----------FWSRV--NIPKVLRA 1351 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHH-----------HHHhc--ccchHhHH
Confidence 6777777777777777776665443 22344555555555543 222233332 22111 1222
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHH-------------HHHHHHCCCCCCHHHHHHHHHHHHhcC--------------
Q 006012 590 --SNLALNSLINAFGEDQRDAEAFAV-------------LQYMKENGLKPDVVTYTTLMKALIRVD-------------- 640 (664)
Q Consensus 590 --~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~g~~p~~~~~~~l~~a~~~~g-------------- 640 (664)
+...|..++-.|.+.|+++.|... |...+. -..|...|...+.-|...+
T Consensus 1352 ~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~r 1429 (1630)
T 1xi4_A 1352 AEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPR 1429 (1630)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhc
Confidence 346799999999999999999842 222111 3457888888888888777
Q ss_pred -CHhHHHHHHH
Q 006012 641 -KFHKVFSSYL 650 (664)
Q Consensus 641 -~~~~A~~~~~ 650 (664)
+.+++.++++
T Consensus 1430 lD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1430 LDHTRAVNYFS 1440 (1630)
T ss_pred CChHHHHHHHH
Confidence 7788887777
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=1.5e-16 Score=163.74 Aligned_cols=272 Identities=13% Similarity=-0.021 Sum_probs=180.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006012 337 AYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYR 416 (664)
Q Consensus 337 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~ 416 (664)
.+..+...+.+.|++++|...|+++.+.... +..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3555555566666666666666665554322 45556666666666666666666666665543 334555666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 006012 417 DRGEWQRTFQVLKEMKSSGVE---------PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE-PDTITWNTLIDCHF 486 (664)
Q Consensus 417 ~~g~~~~a~~~~~~m~~~g~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~ 486 (664)
..|++++|...++++.+.... .....+..+...+.+.|++++|...++++.+.... .+..++..+...|.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 666666666666665543100 11233455677888999999999999999876422 16888999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 006012 487 KCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIE 566 (664)
Q Consensus 487 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 566 (664)
+.|++++|++.|+++.+.. +.+..+|..+..+|...|++++|.+.++++.+... .+..++..+..+|.+.|++++|+.
T Consensus 225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998875 56788999999999999999999999999988642 258889999999999999999998
Q ss_pred HHhhhHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006012 567 CLEGLSDQAVNAFRVMRTD----GLKPSNLALNSLINAFGEDQRDAEAFAVLQY 616 (664)
Q Consensus 567 ~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 616 (664)
.++...+ +....... ....+...|..+..++...|+.+.+..+.++
T Consensus 303 ~~~~al~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 303 NFLTALS----LQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHH----HHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHH----hCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8763332 11110000 0011346788888889899998888876654
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=8.4e-16 Score=158.18 Aligned_cols=267 Identities=12% Similarity=0.039 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006012 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG 344 (664)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 344 (664)
...+..+...+.+.|++++|+..|+++.+.. +.+..+|..+...+.+.|++++|.+.|+++.+... .+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~ 141 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVS 141 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4456677788888899999999999888764 45678888889999999999999999998887643 377888888999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHH
Q 006012 345 YVKMGYLKDAEFVVSEMERSGVLPDEHTYSL---------------LIDAYANAGRWESARIVLKEMEVSHAKP-NSFIY 408 (664)
Q Consensus 345 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~~g~~~~A~~l~~~m~~~~~~~-~~~~~ 408 (664)
+...|++++|.+.++++.+.... +...+.. .+..+...|++++|...++++....... +..++
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 99999999999999998876433 2222211 2333448899999999999998765322 58889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006012 409 SRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC 488 (664)
Q Consensus 409 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 488 (664)
..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+...+..+..+|.+.
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 999999999999999999999988764 4567899999999999999999999999998764 45678899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012 489 GRYDRAEELFEEMQERGYF----------PCTTTYNIMINLLGEQERWEDVKRLLGNM 536 (664)
Q Consensus 489 g~~~~A~~~~~~m~~~~~~----------p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 536 (664)
|++++|...|+++.+.... ....+|..+..++...|+.++|..++.+.
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 9999999999998765311 12688999999999999999999887643
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=1.5e-12 Score=146.99 Aligned_cols=425 Identities=12% Similarity=0.115 Sum_probs=304.5
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHccc--CCHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 006012 130 HSLLKNLCSSNSSIDLAYAVVSWLQKHNL-CYSYELLYSILIHALGRS--EKLYEAFLLSQRQRLTPLTYNALISACARN 206 (664)
Q Consensus 130 ~~~l~~l~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~--~~~~~A~~~~~~~~~~~~~~~~li~~~~~~ 206 (664)
.++..+.....+.+.+|+++++.++-.+- +..+..+.+.|+.+..+. ++..+...... .. ...-+...+...
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd--~~---d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD--NY---DAPDIANIAISN 1062 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhh--hc---cHHHHHHHHHhC
Confidence 34444445578899999999999985542 224556777777666555 33333333221 12 244477888999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012 207 DDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMR 286 (664)
Q Consensus 207 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 286 (664)
|.+++|..+|++... .....+.++. ..++++++ .++.+++ -+..+|..+..++.+.|++++|++
T Consensus 1063 glyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrA--iE~Aerv------n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRA--YEFAERC------NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred CCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHH--HHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999631 2222333333 34444332 2444332 357889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006012 287 FLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGV 366 (664)
Q Consensus 287 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 366 (664)
.|.+. .|...|..++..+.+.|++++|.+.|...++..- +....+.++.+|++.+++++...+. +
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence 99764 5788899999999999999999999998877543 3333445999999999988644443 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012 367 LPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVM 446 (664)
Q Consensus 367 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 446 (664)
.++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 346677888999999999999999999985 37999999999999999999999985 467899999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC
Q 006012 447 IDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE--QE 524 (664)
Q Consensus 447 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~--~g 524 (664)
..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+..+ +-....|.-+...+++ .+
T Consensus 1257 ~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence 99999999999999877653 3466778899999999999999999998887665 4455667666666655 44
Q ss_pred CHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHH--HHHHHHHHCCCCCCHHHHHH
Q 006012 525 RWEDVKRLLGNMRAQGLLP------NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAV--NAFRVMRTDGLKPSNLALNS 596 (664)
Q Consensus 525 ~~~~a~~~~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~--~~~~~m~~~g~~p~~~~~~~ 596 (664)
+..++.++|..-.. +.+ +...|..++-.|.+.|+++.|...+-...+.|. ..|+....+ ..+...|.-
T Consensus 1331 klmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyyk 1406 (1630)
T 1xi4_A 1331 KMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYR 1406 (1630)
T ss_pred HHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHH
Confidence 55555555553322 222 567899999999999999999966544433322 234443332 335555555
Q ss_pred HHHHHHhcC---------------CHHHHHHHHH
Q 006012 597 LINAFGEDQ---------------RDAEAFAVLQ 615 (664)
Q Consensus 597 li~~~~~~g---------------~~~~A~~~~~ 615 (664)
.+.-|...+ +++.+.++|+
T Consensus 1407 ai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1407 AIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 555555444 6666666655
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=4.9e-16 Score=159.96 Aligned_cols=264 Identities=11% Similarity=-0.044 Sum_probs=171.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 302 TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYA 381 (664)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 381 (664)
.|..+...+.+.|++++|.+.|+++.+... .+..++..+...+...|++++|...|+++.+... .+..+|..+...|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 344455555555555555555555544322 2445555555555555555555555555554322 13455555555555
Q ss_pred HcCCHHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHh
Q 006012 382 NAGRWESARIVLKEMEVSHAK---------PNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVE-PDTHFYNVMIDTFG 451 (664)
Q Consensus 382 ~~g~~~~A~~l~~~m~~~~~~---------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~ 451 (664)
..|++++|...|+++.+.... .....+..+...+...|++++|...++++.+.... .+..++..+...|.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 555555555555555442200 01223444567778888888888888888775421 16788888888888
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012 452 KYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKR 531 (664)
Q Consensus 452 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 531 (664)
+.|++++|...+++..+.. +.+..+|..+..+|.+.|++++|+..|+++.+.. +.+..++..+..+|.+.|++++|..
T Consensus 225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 8889999998888888754 3467888889999999999999999999988875 4568888889999999999999999
Q ss_pred HHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012 532 LLGNMRAQGLL-----------PNVVTYTTLVDIYGQSGRFDDAIECLE 569 (664)
Q Consensus 532 ~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (664)
.++++.+.... .+..+|..+..++...|+.+.+..+..
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99988764211 135788999999999999998887754
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=4.7e-16 Score=157.82 Aligned_cols=282 Identities=15% Similarity=0.188 Sum_probs=120.0
Q ss_pred ccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHH
Q 006012 175 RSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYK 254 (664)
Q Consensus 175 ~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~ 254 (664)
+.|++++|....... +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++++ ..++
T Consensus 15 ~~~~ld~A~~fae~~-~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi--~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV--KYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH--HHHH
Confidence 566777777773333 23358888888888888888888888652 46667888888888888776643 5554
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006012 255 EIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR 334 (664)
Q Consensus 255 ~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 334 (664)
...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 44442 4456778888888888888888887774 367778888888888889998888888876
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 006012 335 TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAG 414 (664)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~ 414 (664)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +.....-...++..
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~ 216 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINY 216 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHH
Confidence 35888888888888888888888887 2778888888888888888888554443 22333445567788
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHH
Q 006012 415 YRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY--NCLHHAMAAFDRMLSEGIEP------DTITWNTLIDCHF 486 (664)
Q Consensus 415 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~------~~~~~~~li~~~~ 486 (664)
|.+.|++++|..+++...... +-....|+-+.-.|++- +++.+.++.|..- .+++| +...|..+.-.|.
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877654 45566677666666654 3344444444311 11111 3445777777888
Q ss_pred HcCCHHHHHHH
Q 006012 487 KCGRYDRAEEL 497 (664)
Q Consensus 487 ~~g~~~~A~~~ 497 (664)
+.++++.|...
T Consensus 294 ~~~e~d~A~~t 304 (449)
T 1b89_A 294 KYEEYDNAIIT 304 (449)
T ss_dssp HTTCHHHHHHH
T ss_pred hhchHHHHHHH
Confidence 88888877763
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=3.3e-15 Score=150.72 Aligned_cols=278 Identities=10% Similarity=-0.027 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006012 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG 344 (664)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 344 (664)
...+..+...+...|++++|.++|+++.+.. +.+...+..+...+.+.|++++|.+.|+++.+... .+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHH
Confidence 3445566667777777777777777776643 33566677777777777777777777777766532 255666666677
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhcCCHH
Q 006012 345 YVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILA--GYRDRGEWQ 422 (664)
Q Consensus 345 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~--~~~~~g~~~ 422 (664)
+...|++++|.+.++++.+.... +...+..+... .++......+.. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 77777777777777776654322 11122111000 000111111112 266677778
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 423 RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQ 502 (664)
Q Consensus 423 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 502 (664)
+|...++++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|+++.
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888777654 3467778888888888888888888888887654 3457788888888888999999999998888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHhh
Q 006012 503 ERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP-----------NVVTYTTLVDIYGQSGRFDDAIECLEG 570 (664)
Q Consensus 503 ~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 570 (664)
+.. +.+...+..+...+...|++++|.+.++++.+..... +..++..+..++.+.|++++|..+++.
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 765 4567888888888999999999999998887753221 467888899999999999999888763
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=181.78 Aligned_cols=153 Identities=16% Similarity=0.108 Sum_probs=122.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 006012 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQG---VGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAY 338 (664)
Q Consensus 262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 338 (664)
..-..+||+||++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33456899999999999999999999988764 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC------HHHHHHH
Q 006012 339 NALLKGYVKMGY-LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPN------SFIYSRI 411 (664)
Q Consensus 339 ~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~------~~~~~~l 411 (664)
|+||.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.++.+.+- ++..+++ ..+..|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~v----L~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV----LKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHH----HHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHH----HHHHHHh-CcccCCCCCCcccccchHHH
Confidence 999999999997 47899999999999999999999999876655433 3333333 2223332 3344455
Q ss_pred HHHHHhcC
Q 006012 412 LAGYRDRG 419 (664)
Q Consensus 412 l~~~~~~g 419 (664)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 56665544
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=180.31 Aligned_cols=165 Identities=13% Similarity=0.193 Sum_probs=135.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006012 297 SPKTATYAAVITALSNSGRTIEAEAVFEELKE---SGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY 373 (664)
Q Consensus 297 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 373 (664)
..-..|||++|++||+.|++++|.++|++|.+ .|+.||.+|||+||.+||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34467999999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHH
Q 006012 374 SLLIDAYANAGR-WESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPD------THFYNVM 446 (664)
Q Consensus 374 ~~li~~~~~~g~-~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~------~~~~~~l 446 (664)
|+||+++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+.+ +++..+++ ..+..|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 999999999998 5789999999999999999999999987665543 33333333 2334443 4555667
Q ss_pred HHHHhccC---------CHHHHHHHHHHH
Q 006012 447 IDTFGKYN---------CLHHAMAAFDRM 466 (664)
Q Consensus 447 i~~~~~~g---------~~~~A~~~~~~m 466 (664)
.+.|.+.+ ..++..+.|++-
T Consensus 279 ~dl~s~d~~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 279 RDVYAKDGRVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp HHHHCCCSCCCCCCCSSCHHHHHHHHHHH
T ss_pred HHHHccCCCCcCccccCCHHHHHHHHHHH
Confidence 77777655 245555665543
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=2.9e-15 Score=151.18 Aligned_cols=280 Identities=13% Similarity=0.048 Sum_probs=183.4
Q ss_pred ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006012 227 DFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAV 306 (664)
Q Consensus 227 ~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 306 (664)
+...+......+...|++++ +..+++.+.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~--A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAE--AALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHH--HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHH--HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHH
Confidence 34456677778888998855 458888887754 4578899999999999999999999999998864 4578899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHcC
Q 006012 307 ITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLID--AYANAG 384 (664)
Q Consensus 307 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g 384 (664)
...+...|++++|.+.|+++.+.... +...+..+.... |+......+.. .+...|
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcc
Confidence 99999999999999999999876432 222222221000 01111111211 144455
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 006012 385 RWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFD 464 (664)
Q Consensus 385 ~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 464 (664)
++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++
T Consensus 153 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 153 EYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5556666655555443 2345555556666666666666666666655442 3345666666667777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012 465 RMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP-----------CTTTYNIMINLLGEQERWEDVKRLL 533 (664)
Q Consensus 465 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~t~~~ll~~~~~~g~~~~a~~~~ 533 (664)
++.+.. +.+...+..+...|.+.|++++|.+.|+++.+..... +...|..+..++.+.|++++|..++
T Consensus 231 ~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 231 RALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 766543 2356667777777777778888877777776653111 3667777777888888888887777
Q ss_pred HHH
Q 006012 534 GNM 536 (664)
Q Consensus 534 ~~m 536 (664)
++.
T Consensus 310 ~~~ 312 (327)
T 3cv0_A 310 AQN 312 (327)
T ss_dssp TCC
T ss_pred HHH
Confidence 644
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=1.8e-14 Score=153.81 Aligned_cols=361 Identities=11% Similarity=0.004 Sum_probs=237.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----
Q 006012 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV--------GLSPKTATYAAVITALSNSGRTIEAEAVFEELKES---- 329 (664)
Q Consensus 262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 329 (664)
+.....||.|...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 445678899999999999999999999876541 11234678999999999999999999999887642
Q ss_pred -C-CC-CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhcCC
Q 006012 330 -G-LK-PRTKAYNALLKGYVKM--GYLKDAEFVVSEMERSGVLPDEHTYSLLIDA---YANAGRWESARIVLKEMEVSHA 401 (664)
Q Consensus 330 -~-~~-p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~~~ 401 (664)
+ .. ....+++.+..++.+. +++++|...|++..+..+. +...+..+... +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 11 1345666666666554 4689999999998876433 45555555544 345677788888888887654
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012 402 KPNSFIYSRILAGYRD----RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTIT 477 (664)
Q Consensus 402 ~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 477 (664)
+.+...+..+...+.. .+++++|.+.+++..... +.+..++..+...|.+.|++++|...+++..+.. +.+..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 3455666665555444 457788999998877654 5567888889999999999999999999988764 345666
Q ss_pred HHHHHHHHHHc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 478 WNTLIDCHFKC-------------------GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (664)
Q Consensus 478 ~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 538 (664)
+..+..+|... +.+++|...+++..+.+ +.+...+..+...+...|++++|.+.|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 77666665432 33567888888887765 44566788889999999999999999999988
Q ss_pred CCCCCCH--HHHHHHHH-HHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006012 539 QGLLPNV--VTYTTLVD-IYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQ 615 (664)
Q Consensus 539 ~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 615 (664)
....+.. ..+..+.. .+...|++++|+..++ +... +.|+...... ..+.+.++++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~-----------kal~--i~~~~~~~~~---------~~~~l~~~~~ 420 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI-----------EGVK--INQKSREKEK---------MKDKLQKIAK 420 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH-----------HHHH--SCCCCHHHHH---------HHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH-----------HHHh--cCcccHHHHH---------HHHHHHHHHH
Confidence 6433222 12333332 2346788888877654 3332 3344332221 1233444555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 616 YMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 616 ~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
+.++.. +.+..+|..|+.+|...|++++|++.|+
T Consensus 421 ~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 421 MRLSKN-GADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp HHHHHC-C-CTTHHHHHHHHHHHHHHCC-------
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555432 3456677777777777777777777776
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=1.2e-16 Score=162.09 Aligned_cols=291 Identities=12% Similarity=0.140 Sum_probs=130.7
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012 277 KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEF 356 (664)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 356 (664)
+.|++++|.++++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5678899999988873 2348889999999999999999999653 467788889999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006012 357 VVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGV 436 (664)
Q Consensus 357 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 436 (664)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 77776664 4467788889999999999999887774 367779999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012 437 EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIM 516 (664)
Q Consensus 437 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 516 (664)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|......+ ...+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 36888999999999999999999888 37889999999999999999996655542 2334445578
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 006012 517 INLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQS--GRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLAL 594 (664)
Q Consensus 517 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 594 (664)
+..|.+.|++++|..+++...... .-...+|+-|.-+|++- +++.+.++.|.+.+. ..++.+. --+...|
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in-----i~k~~~~--~~~~~~w 285 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN-----IPKVLRA--AEQAHLW 285 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC-----HHHHHHH--HHTTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc-----CcHHHHH--HHHHHHH
Confidence 888999999999999999888654 34577777777777764 344444444432111 0011100 0133468
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 595 NSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 595 ~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
..++..|.+.++++.|... |.+
T Consensus 286 ~e~~~ly~~~~e~d~A~~t---m~~ 307 (449)
T 1b89_A 286 AELVFLYDKYEEYDNAIIT---MMN 307 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHH---HHH
T ss_pred HHHHHHHHhhchHHHHHHH---HHh
Confidence 8899999999999988873 555
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=7.8e-15 Score=145.44 Aligned_cols=273 Identities=12% Similarity=0.083 Sum_probs=212.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006012 273 VGFAKAGDASKAMRFLGMAQGVGLSPK--TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY 350 (664)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 350 (664)
+-....|++..|+..++..... .|+ ......+.++|...|++++|+..++. .-+|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 3455679999999988876543 343 34556778999999999999986654 235577888889999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006012 351 LKDAEFVVSEMERSGVLP-DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLK 429 (664)
Q Consensus 351 ~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 429 (664)
.++|.+.++++...+..| +...+..+...|...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998876545 466677777899999999999999987 5678889999999999999999999999
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006012 430 EMKSSGVEPDTHFY---NVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY 506 (664)
Q Consensus 430 ~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 506 (664)
.+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|...|++..+..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 998764 443211 223344556689999999999999764 5688899999999999999999999999998876
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 006012 507 FPCTTTYNIMINLLGEQERWED-VKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIE 566 (664)
Q Consensus 507 ~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 566 (664)
+-+..++..++..+...|+.++ +.++++++.+.+ |+... +.+...+.+.++++..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHH
Confidence 6678899999999999999875 678999988753 44322 2344555555555443
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.66 E-value=3e-14 Score=141.23 Aligned_cols=275 Identities=13% Similarity=0.120 Sum_probs=178.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006012 344 GYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQR 423 (664)
Q Consensus 344 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 423 (664)
-....|++..|+..++................+..+|...|++++|+..++. .-+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3445677777777666654332111123445566777777777777765543 124556666777777777777777
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 424 TFQVLKEMKSSGVEP-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQ 502 (664)
Q Consensus 424 a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 502 (664)
|++.++++...+..| +...+..+...+.+.|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777776655333 455566666777777888888777766 3566777777888888888888888888887
Q ss_pred HCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHH
Q 006012 503 ERGYFPCTTTY---NIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAF 579 (664)
Q Consensus 503 ~~~~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~ 579 (664)
+.. |+.... ...+..+...|++++|..+++++.+.. +.+...++.+..++.+.|++++|...++.
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~--------- 225 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQE--------- 225 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH---------
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH---------
Confidence 764 332211 122333445578888888888888763 34777888888888888888888777542
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 006012 580 RVMRTDGLKP-SNLALNSLINAFGEDQRDAE-AFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSY 649 (664)
Q Consensus 580 ~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~ 649 (664)
.... .| +..++..++..+...|+.++ +.++++++++ +.|+... +.+...+.+.|+++..-|
T Consensus 226 --al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 226 --ALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp --HHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred --HHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH---HHHHHHHHHHHHHHHHHc
Confidence 2221 24 45678888888888888765 5678888887 4555332 334556666777766544
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=3e-13 Score=144.29 Aligned_cols=361 Identities=11% Similarity=-0.003 Sum_probs=221.9
Q ss_pred HHHHHHHHHHHcccCCHHHHHHh-------------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh
Q 006012 163 ELLYSILIHALGRSEKLYEAFLL-------------SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFI 229 (664)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~A~~~-------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 229 (664)
..+||.|...|...|++++|+.. ....+....+|+.+..+|...|++++|+..+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~------ 124 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC------ 124 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh------
Confidence 45678888888888888887654 11234456788888888888888888888887765421
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006012 230 NYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKA--GDASKAMRFLGMAQGVGLSPKTATYAAVI 307 (664)
Q Consensus 230 ~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~g~~~~~~~~~~li 307 (664)
.......-.....+++.+..++... +++++|++.|++..+.. +.+...+..+.
T Consensus 125 ------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~ 179 (472)
T 4g1t_A 125 ------------------------EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLA 179 (472)
T ss_dssp ------------------------HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred ------------------------HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 0000000011233444444444443 46778888888777653 23445555444
Q ss_pred HH---HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 308 TA---LSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK----MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAY 380 (664)
Q Consensus 308 ~~---~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 380 (664)
.+ +...++.++|++.|++..+... .+...+..+...+.. .++.++|.+.+++....... +..++..+...|
T Consensus 180 ~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~ 257 (472)
T 4g1t_A 180 IASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFY 257 (472)
T ss_dssp HHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHH
Confidence 44 3345667777887777776532 245555555544444 34667788888777765432 567777788888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHH
Q 006012 381 ANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR-------------------GEWQRTFQVLKEMKSSGVEPDTH 441 (664)
Q Consensus 381 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~-------------------g~~~~a~~~~~~m~~~g~~~~~~ 441 (664)
...|++++|...+++..+.. +.+..++..+..+|... +.++.|...++...+.. +.+..
T Consensus 258 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 335 (472)
T 4g1t_A 258 RRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFR 335 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCC
T ss_pred HHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhh
Confidence 88888888888888877654 33555565555554321 23566777777776643 34456
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTI--TWNTLID-CHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMIN 518 (664)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 518 (664)
++..+...|...|++++|+..|++.++....+... .+..+.. .+.+.|++++|+..|++..+.. |+.....
T Consensus 336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---- 409 (472)
T 4g1t_A 336 VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---- 409 (472)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH----
T ss_pred hhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH----
Confidence 67788889999999999999999988764322211 2222222 2346789999999999988764 4432222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhh
Q 006012 519 LLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEG 570 (664)
Q Consensus 519 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 570 (664)
+....+.+++.+.+..+ +.+..+|..+..+|...|++++|++.++.
T Consensus 410 -----~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 410 -----KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp -----HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------
T ss_pred -----HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22334555666666554 33678899999999999999999988653
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.4e-13 Score=130.69 Aligned_cols=224 Identities=12% Similarity=0.041 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CC----HHHHH
Q 006012 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLK--PR----TKAYN 339 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p~----~~~~~ 339 (664)
..+..+...+...|++++|++.|+++.+.. .+...|..+...+...|++++|.+.|++..+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344555555555555555555555555443 44555555555555555555555555554432111 11 23444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006012 340 ALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG 419 (664)
Q Consensus 340 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g 419 (664)
.+...+...|++++|...++++.+. .|+. ..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~------------------------------------------~~~~~~~ 119 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA------------------------------------------DILTKLR 119 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH------------------------------------------HHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh------------------------------------------HHHHHHh
Confidence 4444444444444444444444442 1221 2233334
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012 420 EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFE 499 (664)
Q Consensus 420 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 499 (664)
++++|...++.+.... +.+...+..+...+...|++++|...+++..+.. +.+...|..+...|.+.|++++|...|+
T Consensus 120 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4444554444444432 2233444455555555555555555555555433 2345555555556666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 500 EMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (664)
Q Consensus 500 ~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 538 (664)
+..+.. +.+...|..+...+...|++++|.+.+++..+
T Consensus 198 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 198 KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 655543 33455555566666666666666666655554
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=6.5e-13 Score=128.73 Aligned_cols=224 Identities=12% Similarity=0.019 Sum_probs=163.1
Q ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC----HH
Q 006012 228 FINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGL--SPK----TA 301 (664)
Q Consensus 228 ~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~----~~ 301 (664)
...+..+...+...|+++. +...++...+.. .+...+..+...|...|++++|++.++.+.+... .++ ..
T Consensus 5 a~~~~~~g~~~~~~~~~~~--A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDE--AIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHH--HHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 3467778888889999855 458888888776 7889999999999999999999999999876431 112 58
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 302 TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYA 381 (664)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 381 (664)
+|..+...+.+.|++++|.+.|++..+. .|+. ..+.+.|++++|...++.+.+.... +...+..+...+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHH
Confidence 8999999999999999999999999885 3453 4466678899999999998876422 4567777788888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 006012 382 NAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMA 461 (664)
Q Consensus 382 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 461 (664)
..|++++|...+++..... +.+..++..+...+...|++++|...++...+.. +.+..++..+...+.+.|++++|..
T Consensus 151 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8888888888888877654 3355566666666666666666666666655532 2334445555555555555555555
Q ss_pred HHHHHH
Q 006012 462 AFDRML 467 (664)
Q Consensus 462 ~~~~m~ 467 (664)
.+++..
T Consensus 229 ~~~~a~ 234 (258)
T 3uq3_A 229 TLDAAR 234 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=7.6e-13 Score=125.06 Aligned_cols=199 Identities=16% Similarity=0.043 Sum_probs=124.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006012 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL 341 (664)
Q Consensus 262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 341 (664)
+++...+..+...+.+.|++++|+..|+++.+.. +.+...|..+...+.+.|++++|+..|++..+... .+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 3455667777777788888888888888877654 44677777788888888888888888888777543 256677777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 006012 342 LKGYVKM-----------GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSR 410 (664)
Q Consensus 342 i~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ 410 (664)
...+... |++++|...+++..+..+. +...+..+...|...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 7777777777666654332 45666666666666677777776666666655 55666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 006012 411 ILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRM 466 (664)
Q Consensus 411 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 466 (664)
+..++...|++++|+..|+...+.. +.+...+..+...+.+.|++++|+..+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666665543 334555566666666666666666665544
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=1.5e-12 Score=123.02 Aligned_cols=84 Identities=18% Similarity=0.093 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012 298 PKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLI 377 (664)
Q Consensus 298 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 377 (664)
++...+..+...+.+.|++++|...|++..+... .+...+..+...+.+.|++++|...+++..+.... +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 3444555555555555555555555555554322 14445555555555555555555555555443321 344444444
Q ss_pred HHHHHc
Q 006012 378 DAYANA 383 (664)
Q Consensus 378 ~~~~~~ 383 (664)
..|...
T Consensus 81 ~~~~~~ 86 (217)
T 2pl2_A 81 EAYVAL 86 (217)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444444
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.51 E-value=4.6e-11 Score=117.09 Aligned_cols=224 Identities=10% Similarity=0.010 Sum_probs=136.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 006012 264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSN----SGRTIEAEAVFEELKESGLKPRTKAYN 339 (664)
Q Consensus 264 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~ 339 (664)
+...+..+...|...|++++|++.|++..+. .+..++..+...+.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455566666677777777777777777662 345666666777777 777777777777766654 556666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 006012 340 ALLKGYVK----MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN----AGRWESARIVLKEMEVSHAKPNSFIYSRI 411 (664)
Q Consensus 340 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~~~~l 411 (664)
.+...|.. .+++++|...+++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 677777777777766653 55666666666666 666666666666666543 44455555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 412 LAGYRD----RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK----YNCLHHAMAAFDRMLSEGIEPDTITWNTLID 483 (664)
Q Consensus 412 l~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 483 (664)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 555555 556666666666655542 34445555555555 555555555555555542 2444445555
Q ss_pred HHHH----cCCHHHHHHHHHHHHHCC
Q 006012 484 CHFK----CGRYDRAEELFEEMQERG 505 (664)
Q Consensus 484 ~~~~----~g~~~~A~~~~~~m~~~~ 505 (664)
.|.+ .+++++|.+.|++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5555 555555555555555543
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=5.2e-12 Score=129.53 Aligned_cols=248 Identities=9% Similarity=0.037 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006012 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR-TIEAEAVFEELKESGLKPRTKAYNALLK 343 (664)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~~~~p~~~~~~~li~ 343 (664)
...|+.+...+.+.|++++|++.|+++++.. +.+...|+.+..++.+.|+ +++|++.|++.++.... +...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3445666667777888888888888887754 3457788888888888886 88888888888876443 6778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHH
Q 006012 344 GYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRD-RGEWQ 422 (664)
Q Consensus 344 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~ 422 (664)
++...|++++|+..++++++.... +..+|..+..++.+.|++++|+..|+++.+.. +-+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 888888888888888888876544 67788888888888888888888888887765 3467777777777777 45545
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC------
Q 006012 423 RT-----FQVLKEMKSSGVEPDTHFYNVMIDTFGKYN--CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCG------ 489 (664)
Q Consensus 423 ~a-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g------ 489 (664)
+| +..+++..... +-+...|+.+...+.+.| ++++|.+.+.++ +.. +.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 55 46666665543 345566666666666666 466677766666 322 345566666666666653
Q ss_pred ---CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 006012 490 ---RYDRAEELFEEM-QERGYFPCTTTYNIMINLL 520 (664)
Q Consensus 490 ---~~~~A~~~~~~m-~~~~~~p~~~t~~~ll~~~ 520 (664)
..++|+++|+++ .+.+ +.....|..+...+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 246677777776 4443 33344444444433
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=4e-12 Score=124.45 Aligned_cols=233 Identities=8% Similarity=-0.052 Sum_probs=125.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 006012 268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP--RTKAYNALLKGY 345 (664)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p--~~~~~~~li~~~ 345 (664)
+......+...|++++|++.|+.+.+.. +.+...+..+...+.+.|++++|.+.|++..+....+ ....|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445556667777777777777776653 2344466667777777777777777777776632111 133466666667
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012 346 VKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTF 425 (664)
Q Consensus 346 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 425 (664)
...|++++|.+.+++..+.... +..+|..+...|...|++++|...|++..+.. +.+...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766654322 44566666666666666666666666665442 334444444442333334566666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHHcCCHHHHH
Q 006012 426 QVLKEMKSSGVEPDTHFYNVMIDTFGKYNC---LHHAMAAFDRMLSEG-IEPD------TITWNTLIDCHFKCGRYDRAE 495 (664)
Q Consensus 426 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~~~------~~~~~~li~~~~~~g~~~~A~ 495 (664)
+.|+++.+.. +.+...+..+...+...|+ .++|...+++..+.. ..|+ ...|..+...|.+.|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6555555432 2224444444444444444 444444444443320 0011 123444444444445555555
Q ss_pred HHHHHHHHC
Q 006012 496 ELFEEMQER 504 (664)
Q Consensus 496 ~~~~~m~~~ 504 (664)
+.|++..+.
T Consensus 242 ~~~~~al~~ 250 (272)
T 3u4t_A 242 AAWKNILAL 250 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 555544443
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=6.2e-11 Score=116.18 Aligned_cols=224 Identities=10% Similarity=0.006 Sum_probs=148.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012 299 KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK----MGYLKDAEFVVSEMERSGVLPDEHTYS 374 (664)
Q Consensus 299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~ 374 (664)
+..++..+...+...|++++|.+.|++..+. -+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4566777777777777888888877777762 245666677777777 777777777777777664 566777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012 375 LLIDAYAN----AGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRD----RGEWQRTFQVLKEMKSSGVEPDTHFYNVM 446 (664)
Q Consensus 375 ~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 446 (664)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777776653 56666666666666 677777777777766654 44555555
Q ss_pred HHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 447 IDTFGK----YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK----CGRYDRAEELFEEMQERGYFPCTTTYNIMIN 518 (664)
Q Consensus 447 i~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 518 (664)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 556655 666666666666666543 34555566666666 666666666666666654 2455555556
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCC
Q 006012 519 LLGE----QERWEDVKRLLGNMRAQG 540 (664)
Q Consensus 519 ~~~~----~g~~~~a~~~~~~m~~~~ 540 (664)
.|.. .+++++|.+.+++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6665 666666666666666543
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=1.8e-11 Score=118.27 Aligned_cols=198 Identities=14% Similarity=-0.009 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006012 303 YAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN 382 (664)
Q Consensus 303 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 382 (664)
|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...|..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHH
Confidence 3333444444444444444444443322 113334444444444444444444444444333211 33344444444444
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 006012 383 AGRWESARIVLKEMEVSHAKP-NSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMA 461 (664)
Q Consensus 383 ~g~~~~A~~l~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 461 (664)
.|++++|.+.++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444443311111 22333334444444444444444444433322 2233444444444444444444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006012 462 AFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER 504 (664)
Q Consensus 462 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (664)
.++.+.+.. +.+...+..+...|.+.|++++|.++++++.+.
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444444322 223344444444444455555555555544443
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=1.9e-11 Score=118.11 Aligned_cols=202 Identities=13% Similarity=0.092 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 006012 335 TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAG 414 (664)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~ 414 (664)
...+..+...+...|++++|.+.++++.+... .+..++..+...|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 46678888889999999999999999887643 367888999999999999999999999988764 3467888889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012 415 YRDRGEWQRTFQVLKEMKSSGVEP-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR 493 (664)
Q Consensus 415 ~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 493 (664)
+...|++++|.+.++++.+.+..| +...+..+...+.+.|++++|...+++..+.. +.+...+..+...|.+.|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999988733334 45777888888999999999999999988764 3467888888999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012 494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG 540 (664)
Q Consensus 494 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 540 (664)
|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999988765 5677788888888899999999999999988753
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=2.3e-11 Score=114.94 Aligned_cols=200 Identities=8% Similarity=-0.068 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006012 264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLK 343 (664)
Q Consensus 264 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 343 (664)
+...+..+...+...|++++|++.|+.+.+.. +.+...+..+...+...|++++|.+.|+++.+... .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 34455666666666677777776666666543 33455666666666666666666666666655432 24555555666
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 006012 344 GYVKM-GYLKDAEFVVSEMERSGVLPD-EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEW 421 (664)
Q Consensus 344 ~~~~~-g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 421 (664)
.+... |++++|...++++.+.+..|+ ...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 66666 666666666666555211222 3445555555555555555555555554432 22344444444444444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 006012 422 QRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRM 466 (664)
Q Consensus 422 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 466 (664)
++|...++++.+.....+...+..+...+...|+.+.+..+++.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 444444444433221023333333333334444444444444443
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=4e-11 Score=113.26 Aligned_cols=201 Identities=10% Similarity=-0.080 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 299 KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLID 378 (664)
Q Consensus 299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 378 (664)
+...|..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.++++.+... .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 345566666666666666666666666665432 2455566666666666666666666666655432 24455555555
Q ss_pred HHHHc-CCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 006012 379 AYANA-GRWESARIVLKEMEVSHAKP-NSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCL 456 (664)
Q Consensus 379 ~~~~~-g~~~~A~~l~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 456 (664)
.|... |++++|...++++.+....| +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 55566 66666666665555421111 13444445555555555555555555544432 22334444444444444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 457 HHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQ 502 (664)
Q Consensus 457 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 502 (664)
++|...++.+.+.....+...+..+...+...|+.++|..+++.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4444444444432210233334444444444444444444444443
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.47 E-value=1.2e-11 Score=121.03 Aligned_cols=246 Identities=11% Similarity=0.025 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 006012 301 ATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPD--EHTYSLLID 378 (664)
Q Consensus 301 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~ 378 (664)
..+......+.+.|++++|++.|++..+.... +...+..+..++...|++++|...+++..+.+..++ ..+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34556778889999999999999999886432 455788888999999999999999999988432222 445888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 006012 379 AYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHH 458 (664)
Q Consensus 379 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 458 (664)
.|...|++++|+..|++..+.. +.+..++..+...|...|++++|...+++..+.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765 3466789999999999999999999999987763 4566777777734444459999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHH
Q 006012 459 AMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR---YDRAEELFEEMQERG-YFPC------TTTYNIMINLLGEQERWED 528 (664)
Q Consensus 459 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~t~~~ll~~~~~~g~~~~ 528 (664)
|...|++..+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+ ...|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999998764 3457778888888888888 888998888886541 1122 2577788888899999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH
Q 006012 529 VKRLLGNMRAQGLLPNVVTYTTL 551 (664)
Q Consensus 529 a~~~~~~m~~~~~~p~~~~~~~l 551 (664)
|.+.++++.+.... +......+
T Consensus 240 A~~~~~~al~~~p~-~~~a~~~l 261 (272)
T 3u4t_A 240 ADAAWKNILALDPT-NKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHhcCcc-HHHHHHHh
Confidence 99999999886422 44444433
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=3.5e-12 Score=124.94 Aligned_cols=221 Identities=12% Similarity=-0.027 Sum_probs=138.0
Q ss_pred cCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006012 278 AGDASKAMRFLGMAQGVGL---SPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDA 354 (664)
Q Consensus 278 ~g~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 354 (664)
.|++++|++.|+.+.+... +.+..+|..+...+...|++++|.+.|+++.+... .+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHH
Confidence 4677888888888776531 11356677777888888888888888888777543 2567777777888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS 434 (664)
Q Consensus 355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 434 (664)
...++++.+.... +..++..+...|.+.|++++|...|+++.+.. |+.......+..+...|++++|...+.+....
T Consensus 97 ~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888877765322 56677777777777888888887777776643 33333333334445556777777777665543
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006012 435 GVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE---PDTITWNTLIDCHFKCGRYDRAEELFEEMQER 504 (664)
Q Consensus 435 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (664)
. +++...+ .++..+...++.++|...+....+.... .+...+..+...|.+.|++++|...|++..+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2 2222222 2455555556666666666655432110 01344555555666666666666666665554
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=1.3e-11 Score=130.43 Aligned_cols=313 Identities=11% Similarity=0.040 Sum_probs=152.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006012 198 ALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKID-SSLLQKLYKEIECDKIELDGQLLNDVIVGFA 276 (664)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~-~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~ 276 (664)
.+...+.+.|++++|+.+|++..+.|. ++ .+..+-..+...|... ...+...|+...+. +...+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~-~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY-SE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC-CT--GGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 356677888999999999999887762 22 2222222233333330 01233445444432 4444455555344
Q ss_pred HcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006012 277 KAG-----DASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIE---AEAVFEELKESGLKPRTKAYNALLKGYVKM 348 (664)
Q Consensus 277 ~~g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 348 (664)
..| ++++|++.|++..+.|. + ..+..|...|...+..++ +.+.+......|. ......|...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcC
Confidence 433 56667777776666542 2 245555555555544332 3333333333332 23444555555555
Q ss_pred CCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---
Q 006012 349 GYLKD----AEFVVSEMERSGVLPDEHTYSLLIDAYANAG---RWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR--- 418 (664)
Q Consensus 349 g~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~--- 418 (664)
+.+++ +..+++..... +...+..|...|...| +.++|++.|++..+.+ .++...+..+...|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGS
T ss_pred CCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCC
Confidence 53333 33333332221 2235666666666666 6666666666666555 34444444455555433
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----
Q 006012 419 -GEWQRTFQVLKEMKSSGVEPDTHFYNVMIDT-F--GKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCG----- 489 (664)
Q Consensus 419 -g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----- 489 (664)
+++++|+..|+... . -+...+..+... + ...++.++|...|++..+.| +...+..|...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 46666666666655 2 233344444444 2 34566666666666666544 4455555555554 33
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 006012 490 RYDRAEELFEEMQERGYFPCTTTYNIMINLLGE----QERWEDVKRLLGNMRAQG 540 (664)
Q Consensus 490 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~ 540 (664)
++++|++.|++.. .| +...+..+...|.. ..+.++|.+.+++..+.|
T Consensus 302 d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp CHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 6666666666655 33 34455555544444 235666666666665544
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=5e-12 Score=121.32 Aligned_cols=200 Identities=13% Similarity=0.048 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006012 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG 344 (664)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 344 (664)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.|+++.+... .+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 3444444445555555555555555554432 22344444444444445555555554444444321 133344444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006012 345 YVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRT 424 (664)
Q Consensus 345 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 424 (664)
+.. .|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 101 ~~~-----------------------------------~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 101 YVV-----------------------------------KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHH-----------------------------------TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHH-----------------------------------hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 444 444444444444443322 12333344444444444444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006012 425 FQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER 504 (664)
Q Consensus 425 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (664)
...++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..+|.+.|++++|.+.++++.+.
T Consensus 145 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 145 LPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 44444443321 2234444444445555555555555555544432 223445555555555555555555555555554
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.46 E-value=3.7e-12 Score=134.62 Aligned_cols=374 Identities=12% Similarity=0.091 Sum_probs=226.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006012 234 VIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDA---SKAMRFLGMAQGVGLSPKTATYAAVITAL 310 (664)
Q Consensus 234 ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 310 (664)
+...+.+.|+++. +.+.|....+.| +...+..|...|...|+. ++|++.|++..+. +...+..+...+
T Consensus 9 la~~~~~~g~~~~--A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 9 LANEALKRGDTVT--AQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHhCCCHHH--HHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 4445566666643 457777776654 344555666777777887 8888888887753 555666666655
Q ss_pred HhcC-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006012 311 SNSG-----RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLK---DAEFVVSEMERSGVLPDEHTYSLLIDAYAN 382 (664)
Q Consensus 311 ~~~g-----~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 382 (664)
...+ ++++|.+.|++..+.|.. ..+..|...|...+..+ ++.+.+......| +...+..|...|..
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 5555 678888888888876543 25666777777665433 3444455444443 34566777778888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CC
Q 006012 383 AGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG---EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY----NC 455 (664)
Q Consensus 383 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~ 455 (664)
.+.++++......+.+.-...+...+..+...|...| +.++|++.|+...+.| .++...+..+...|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 7755544444333322212233337778888888888 8889999998888877 56666666677777654 78
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHH
Q 006012 456 LHHAMAAFDRMLSEGIEPDTITWNTLIDC-H--FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE-----RWE 527 (664)
Q Consensus 456 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-----~~~ 527 (664)
.++|...|++.. . -+...+..|... | ...+++++|++.|++..+.| +...+..+...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 899999998887 3 345566666665 3 45788999999999988877 5677777777776 45 889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012 528 DVKRLLGNMRAQGLLPNVVTYTTLVDIYGQ----SGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE 603 (664)
Q Consensus 528 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 603 (664)
+|.+.+++.. . -+...+..|...|.. ..++++|.+. |++..+.|. ......|...|..
T Consensus 305 ~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~-----------~~~Aa~~g~---~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 305 AAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDH-----------LLTAARNGQ---NSADFAIAQLFSQ 366 (452)
T ss_dssp HHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHH-----------HHHHHTTTC---TTHHHHHHHHHHS
T ss_pred HHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHH-----------HHHHHhhCh---HHHHHHHHHHHHh
Confidence 9999998887 3 366777778777776 2255555444 666666553 3345556666653
Q ss_pred ----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 604 ----DQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 604 ----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
..+.++|..+++...+.|. ++.......+......++.++|.+..+
T Consensus 367 G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~ 416 (452)
T 3e4b_A 367 GKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQ 416 (452)
T ss_dssp CTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4588999999999988773 232222222222233445566666655
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.46 E-value=1.6e-12 Score=127.45 Aligned_cols=248 Identities=10% Similarity=-0.015 Sum_probs=194.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006012 311 SNSGRTIEAEAVFEELKESGLK---PRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWE 387 (664)
Q Consensus 311 ~~~g~~~~A~~l~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 387 (664)
...|++++|++.|+++.+.... .+..++..+...+...|++++|...++++.+.... +..+|..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 3457899999999999986321 24678889999999999999999999999986543 7889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 006012 388 SARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRML 467 (664)
Q Consensus 388 ~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 467 (664)
+|...|++..+.. +.+...+..+...+...|++++|...++++.+.. |+.......+..+...|++++|...+....
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999998864 4467889999999999999999999999998753 444444455556677799999999998887
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006012 468 SEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYF---PCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN 544 (664)
Q Consensus 468 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 544 (664)
... +++...+. ++..+...++.++|++.+++..+.... .+...+..+...+...|++++|...++++.+.. |+
T Consensus 172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH 247 (275)
T ss_dssp HHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred hcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence 653 33444444 677778888899999999988765311 115788889999999999999999999999864 42
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHH
Q 006012 545 VVTYTTLVDIYGQSGRFDDAIECL 568 (664)
Q Consensus 545 ~~~~~~li~~~~~~g~~~~A~~~~ 568 (664)
. +.....++...|++++|++.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 333456777888888877653
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=5.3e-12 Score=121.15 Aligned_cols=211 Identities=11% Similarity=0.066 Sum_probs=154.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 006012 334 RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILA 413 (664)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~ 413 (664)
....|..+...+...|++++|...++++.+.... +...+..+...|...|++++|...+++..+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4456666777777778888888888877765432 57777888888888888888888888887654 446788888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012 414 GYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR 493 (664)
Q Consensus 414 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 493 (664)
.+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...|.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999988764 4567888888899999999999999999988754 3467788888999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006012 494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTT 550 (664)
Q Consensus 494 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 550 (664)
|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+..
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~ 232 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHA 232 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHH
Confidence 999999988775 456788888999999999999999999999885422 3444443
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.45 E-value=1.6e-11 Score=125.95 Aligned_cols=248 Identities=7% Similarity=0.019 Sum_probs=207.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 300 TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY-LKDAEFVVSEMERSGVLPDEHTYSLLID 378 (664)
Q Consensus 300 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~ 378 (664)
...|..+...+.+.|++++|++.|++.++.... +...|+.+..++...|+ +++|+..++++++.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 567888889999999999999999999986543 78899999999999997 99999999999987654 7889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHH
Q 006012 379 AYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK-YNCLH 457 (664)
Q Consensus 379 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~ 457 (664)
.|...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++++.. +-+...|+.+...+.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999876 5688899999999999999999999999999875 4578899999999988 66657
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------
Q 006012 458 HA-----MAAFDRMLSEGIEPDTITWNTLIDCHFKCG--RYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE------ 524 (664)
Q Consensus 458 ~A-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g------ 524 (664)
+| +..+++.++.. +-+...|+.+...+.+.| ++++|++.+.++ +.+ +.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 77 58888888764 346788999999998888 689999999998 433 567788889999998874
Q ss_pred ---CHHHHHHHHHHH-HHCCCCCC-HHHHHHHHHHHH
Q 006012 525 ---RWEDVKRLLGNM-RAQGLLPN-VVTYTTLVDIYG 556 (664)
Q Consensus 525 ---~~~~a~~~~~~m-~~~~~~p~-~~~~~~li~~~~ 556 (664)
..++|.++++++ .+. .|. ...|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 358999999999 664 343 455655555544
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=7.9e-12 Score=130.53 Aligned_cols=283 Identities=16% Similarity=0.081 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCH
Q 006012 300 TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRT----KAYNALLKGYVKMGYLKDAEFVVSEMERS----GV-LPDE 370 (664)
Q Consensus 300 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~ 370 (664)
...+..+...+...|++++|.+.|+++.+.+.. +. ..+..+...|...|++++|...+++..+. +- ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345556677778888888888888888775332 32 46777777778888888888887776542 11 1123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 371 HTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTF 450 (664)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 450 (664)
.++..+...|...|++++|...+++....... .+ .......++..+...|
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~---------------~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQ---------------LG---------------DRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------HT---------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---------------hh---------------chHHHHHHHHHHHHHH
Confidence 55666666777777777777777665432100 00 0001122334444444
Q ss_pred hccCC-----------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-C
Q 006012 451 GKYNC-----------------LHHAMAAFDRMLSE----GI-EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY-F 507 (664)
Q Consensus 451 ~~~g~-----------------~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~ 507 (664)
...|+ +++|...+++..+. +. ......+..+...|...|++++|++.+++..+... .
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 44444 55555555443321 10 11234667777788888888888888887765310 0
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C---CCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHH
Q 006012 508 PC----TTTYNIMINLLGEQERWEDVKRLLGNMRAQGL--L---PNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNA 578 (664)
Q Consensus 508 p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~ 578 (664)
.+ ...+..+...+...|++++|.+.+++..+... . ....++..+...|...|++++|...++.. +.+
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----l~~ 332 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH----LAI 332 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHH
Confidence 11 23677788888899999999999888775311 1 11567788899999999999999887643 333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 579 FRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 579 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
...... ......++..+..+|...|++++|.+++++..+
T Consensus 333 ~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 333 AQELGD--RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCC--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 332210 011234778889999999999999999999987
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.40 E-value=1.2e-11 Score=128.69 Aligned_cols=301 Identities=13% Similarity=0.026 Sum_probs=219.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC
Q 006012 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK----TATYAAVITALSNSGRTIEAEAVFEELKES----GLKP 333 (664)
Q Consensus 262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p 333 (664)
......+......+...|++++|...|+++.+.+ +.+ ...|..+...+...|++++|...|++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3455566677788899999999999999988764 223 357888999999999999999999987542 2111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCC--------------------HH
Q 006012 334 -RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVL-PD----EHTYSLLIDAYANAGR--------------------WE 387 (664)
Q Consensus 334 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~ 387 (664)
...++..+...+...|++++|...+++..+.... .+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2457788888999999999999999887653110 12 4578888889999999 99
Q ss_pred HHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHH
Q 006012 388 SARIVLKEMEVS----H-AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGV-EPD----THFYNVMIDTFGKYNCLH 457 (664)
Q Consensus 388 ~A~~l~~~m~~~----~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~ 457 (664)
+|...+++.... + .+....++..+...+...|++++|...+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998876542 1 111234677888899999999999999988764210 122 347788888899999999
Q ss_pred HHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHH
Q 006012 458 HAMAAFDRMLSEGI-EPD----TITWNTLIDCHFKCGRYDRAEELFEEMQERGY-FPC----TTTYNIMINLLGEQERWE 527 (664)
Q Consensus 458 ~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~~~ 527 (664)
+|...+++..+... ..+ ..++..+...|.+.|++++|...+++..+... ..+ ..++..+...+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 99999988764310 011 45778888899999999999999988765310 111 456778888889999999
Q ss_pred HHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChHH
Q 006012 528 DVKRLLGNMRAQ----GLL-PNVVTYTTLVDIYGQSGRFDD 563 (664)
Q Consensus 528 ~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~ 563 (664)
+|.+.+++..+. +.. ....++..+...+...|+...
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999887653 111 124566677777777776643
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=1e-11 Score=129.20 Aligned_cols=311 Identities=14% Similarity=0.078 Sum_probs=184.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC
Q 006012 297 SPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR----TKAYNALLKGYVKMGYLKDAEFVVSEMERS----GVLP 368 (664)
Q Consensus 297 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~ 368 (664)
......+......+...|++++|...|++..+.+.. + ...+..+...+...|++++|...+++..+. +-.+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345566677777788888888888888887775322 2 245667777777778888887777775432 1111
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCC-------------HHHHHHHHH
Q 006012 369 -DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAK-PN----SFIYSRILAGYRDRGE-------------WQRTFQVLK 429 (664)
Q Consensus 369 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-~~----~~~~~~ll~~~~~~g~-------------~~~a~~~~~ 429 (664)
...++..+...|...|++++|...+++....... .+ ..++..+...|...|+ .+++...
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~-- 162 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA-- 162 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH--
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH--
Confidence 1345566666667777777777776665432100 01 2233444444444444 0000000
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006012 430 EMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE----GI-EPDTITWNTLIDCHFKCGRYDRAEELFEEMQER 504 (664)
Q Consensus 430 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (664)
+++|...+.+..+. +. .....++..+...|...|++++|.+.+++..+.
T Consensus 163 --------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 163 --------------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45555544443321 10 111335666777777778888888777776543
Q ss_pred CC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHhhhHHH
Q 006012 505 GY-FPC----TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PN----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQ 574 (664)
Q Consensus 505 ~~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 574 (664)
.. .++ ..++..+...+...|++++|...+++..+.... .+ ..++..+...|.+.|++++|.+.++..
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a--- 293 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH--- 293 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH---
Confidence 10 111 236677777788888888888888777643110 11 457778888888888888888876533
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHh
Q 006012 575 AVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKEN----GLKP-DVVTYTTLMKALIRVDKFH 643 (664)
Q Consensus 575 a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~a~~~~g~~~ 643 (664)
+.+... .+-.+. ..++..+...|...|++++|.+++++..+. +..+ ...++..+...+...|+..
T Consensus 294 -~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 294 -LAIAQE---LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp -HHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred -HHHHHh---cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 222222 111111 346778888888899999999988887652 2122 2456777888887777663
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.38 E-value=1.3e-11 Score=128.73 Aligned_cols=236 Identities=15% Similarity=0.078 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCCHH
Q 006012 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKT----ATYAAVITALSNSGRTIEAEAVFEELKES----GL-KPRTK 336 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~-~p~~~ 336 (664)
..+..+...+...|++++|++.|+++.+.+ +.+. ..|..+...+...|++++|.+.|++..+. +. .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 344556778899999999999999998864 2233 57888999999999999999999987653 11 12356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHH
Q 006012 337 AYNALLKGYVKMGYLKDAEFVVSEMERS----G-VLPDEHTYSLLIDAYANAGR-----------------WESARIVLK 394 (664)
Q Consensus 337 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~l~~ 394 (664)
++..+...|...|++++|...+++..+. + ......++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888899999999999999999887653 1 11134577788888888898 888887777
Q ss_pred HHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHH
Q 006012 395 EMEVS----HA-KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGV-EPD----THFYNVMIDTFGKYNCLHHAMAAFD 464 (664)
Q Consensus 395 ~m~~~----~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 464 (664)
+.... +. .....++..+...+...|++++|...+++..+... ..+ ..++..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 65432 10 11223555666666666777777666666543210 011 1244445555555555555555555
Q ss_pred HHHHCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 465 RMLSEGIE-----PDTITWNTLIDCHFKCGRYDRAEELFEEMQ 502 (664)
Q Consensus 465 ~m~~~g~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 502 (664)
+..+.... ....++..+...|...|++++|...+++..
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44431100 012334444444555555555555554443
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=5.4e-11 Score=119.78 Aligned_cols=164 Identities=16% Similarity=0.095 Sum_probs=105.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHH
Q 006012 268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK----TATYAAVITALSNSGRTIEAEAVFEELKES----GLKP-RTKAY 338 (664)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p-~~~~~ 338 (664)
+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. +..+ ...++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3445567788899999999998887753 223 356778888888899999998888876542 1111 24567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 006012 339 NALLKGYVKMGYLKDAEFVVSEMERSGV-LPD----EHTYSLLIDAYANAGR--------------------WESARIVL 393 (664)
Q Consensus 339 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~ 393 (664)
..+...+...|++++|...+++..+... ..+ ..++..+...|...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7778888888888888888877654211 012 3366777777777777 77777777
Q ss_pred HHHHhc----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 394 KEMEVS----H-AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMK 432 (664)
Q Consensus 394 ~~m~~~----~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 432 (664)
++.... + ......++..+...+...|++++|...+++..
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 665321 1 01112244555555555666666666555543
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.34 E-value=3e-08 Score=108.56 Aligned_cols=427 Identities=11% Similarity=0.059 Sum_probs=227.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-CChHHHHHHHHHHHhCC-CCCC
Q 006012 187 QRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNK-IDSSLLQKLYKEIECDK-IELD 264 (664)
Q Consensus 187 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~~~~~~l~~~~~~~~-~~~d 264 (664)
...+.|..+|..+|..+.+.+.++.+..+|+++... ++.....|..-+..-.+.+. .+...+..+|+...... .+|+
T Consensus 60 ~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~s 138 (679)
T 4e6h_A 60 EEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNND 138 (679)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCC
T ss_pred HHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCC
Confidence 344678889999999999999999999999999886 34455566666666555554 01244567777776643 2477
Q ss_pred HHHHHHHHHHHHHcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHHHh---------cCChHHHHHHHH
Q 006012 265 GQLLNDVIVGFAKAGDA--------SKAMRFLGMAQG-VGL-SPK-TATYAAVITALSN---------SGRTIEAEAVFE 324 (664)
Q Consensus 265 ~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~g~~~~A~~l~~ 324 (664)
+..|..-+....+.++. +...++|+.+.. .|. .++ ...|...+..... .++++.+.++|+
T Consensus 139 v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ 218 (679)
T 4e6h_A 139 LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYK 218 (679)
T ss_dssp HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHH
Confidence 77777777766555543 233466766543 455 443 4567777765442 334666777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC-
Q 006012 325 ELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVS--HA- 401 (664)
Q Consensus 325 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~- 401 (664)
..+......-..+|......-...+. ..+.+++.+. ..+++.|...+.++... ++
T Consensus 219 raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~ 276 (679)
T 4e6h_A 219 TLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLK 276 (679)
T ss_dssp HHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHh
Confidence 77743111112333322221111111 0011111110 01222233333332110 00
Q ss_pred ---C-----------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006012 402 ---K-----------P-----N---SFIYSRILAGYRDRG-------EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK 452 (664)
Q Consensus 402 ---~-----------~-----~---~~~~~~ll~~~~~~g-------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 452 (664)
+ | + ...|...+..--..+ ..+.+..+|+++.... +-....|...+..+..
T Consensus 277 r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~ 355 (679)
T 4e6h_A 277 RNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGE 355 (679)
T ss_dssp CCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred hccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHh
Confidence 0 0 0 123333333222221 1233445566655432 3456666666666666
Q ss_pred cCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------CCCC------------H
Q 006012 453 YNCLHHAM-AAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG---------YFPC------------T 510 (664)
Q Consensus 453 ~g~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~ 510 (664)
.|+.++|. .++++.... ++.+...|-..+....+.|++++|.++|+++++.. -.|+ .
T Consensus 356 ~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp HSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 66666675 777776653 23455556666666667777777777777766431 0121 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHhhhHHHHHHHHHHHHHCCCCC
Q 006012 511 TTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSG-RFDDAIECLEGLSDQAVNAFRVMRTDGLKP 589 (664)
Q Consensus 511 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p 589 (664)
..|...++...+.|..+.|..+|.++.+.-......+|...+..-.+.| +++.|.++|+..++ . ..-
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk-----------~-~p~ 502 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK-----------Y-FAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-----------H-HTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----------H-CCC
Confidence 3466666666666777777777777766411112333333333333333 36666666542221 1 112
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 590 SNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP--DVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 590 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
+...|...+......|+.+.|..+|++.+.....+ ....|...++.-.+.|+.+.+.++++
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455666666666777777777777776642211 23566666666666777777776666
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=7.7e-11 Score=118.65 Aligned_cols=281 Identities=14% Similarity=0.079 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHH
Q 006012 301 ATYAAVITALSNSGRTIEAEAVFEELKESGLKPR----TKAYNALLKGYVKMGYLKDAEFVVSEMERS----GVL-PDEH 371 (664)
Q Consensus 301 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~ 371 (664)
..+......+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.+++..+. +.. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 44555666777777888888887777765322 2 355666777777777777777777765432 111 1134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 372 TYSLLIDAYANAGRWESARIVLKEMEVSHA-KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTF 450 (664)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 450 (664)
++..+...|...|++++|...+++...... ..+.. ....++..+...+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~ 133 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVY 133 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHH
Confidence 555566666666666666666665543210 01100 0012333444444
Q ss_pred hccCC--------------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-
Q 006012 451 GKYNC--------------------LHHAMAAFDRMLSE----GI-EPDTITWNTLIDCHFKCGRYDRAEELFEEMQER- 504 (664)
Q Consensus 451 ~~~g~--------------------~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 504 (664)
...|+ +++|...+++..+. +. ......+..+...|...|++++|.+.+++..+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 213 (338)
T 3ro2_A 134 HAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213 (338)
T ss_dssp HHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44444 45555554443321 10 111345667777788888888888888877543
Q ss_pred ---CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHH
Q 006012 505 ---GY-FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PN----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQA 575 (664)
Q Consensus 505 ---~~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a 575 (664)
+. .....++..+...+...|++++|.+.+++..+.... .+ ..++..+...|...|++++|...++..
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---- 289 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH---- 289 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH----
Confidence 10 011236777788888888999888888877653111 11 567788889999999999999887633
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 576 VNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 576 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
+........ ......++..+...|.+.|++++|..+++++.+
T Consensus 290 ~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 290 LAIAQELKD--RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCC--cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 333322210 011134678889999999999999999999887
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=1.5e-09 Score=108.36 Aligned_cols=218 Identities=13% Similarity=0.111 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006012 282 SKAMRFLGMAQGVGLSPKTATYAAVITALSN-------SGRT-------IEAEAVFEELKESGLKPRTKAYNALLKGYVK 347 (664)
Q Consensus 282 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 347 (664)
++|..+|+++.... +.+...|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666777666542 3456666666666553 3554 6666666666652112244566666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 006012 348 MGYLKDAEFVVSEMERSGVLPDEH-TYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYR-DRGEWQRTF 425 (664)
Q Consensus 348 ~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~ 425 (664)
.|++++|.++|++..+.... +.. +|..++..+.+.|++++|..+|++..+... .+...|........ ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666654221 222 566666666666666666666666655431 22233322222211 135555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 426 QVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG-IEP--DTITWNTLIDCHFKCGRYDRAEELFEEMQ 502 (664)
Q Consensus 426 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 502 (664)
.+|+...+.. +.+...+..++..+.+.|++++|..+|++..+.. +.| ....|..++..+.+.|+.++|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555544321 2234444444444444455555555554444431 121 23344444444444444444444444444
Q ss_pred H
Q 006012 503 E 503 (664)
Q Consensus 503 ~ 503 (664)
+
T Consensus 269 ~ 269 (308)
T 2ond_A 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 3
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=4e-10 Score=102.96 Aligned_cols=168 Identities=13% Similarity=0.056 Sum_probs=130.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006012 263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALL 342 (664)
Q Consensus 263 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 342 (664)
-+..+|..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|...+......... +...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 356778888888888888888888888887754 446778888888888888888888888888775433 566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012 343 KGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ 422 (664)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 422 (664)
..+...++++.+...+.+..+.... +...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 8888888888888888887765433 67777888888888888888888888887664 456677777888888888888
Q ss_pred HHHHHHHHHHHC
Q 006012 423 RTFQVLKEMKSS 434 (664)
Q Consensus 423 ~a~~~~~~m~~~ 434 (664)
+|++.|++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 888888877764
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=1.6e-09 Score=108.16 Aligned_cols=218 Identities=10% Similarity=0.021 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 006012 317 IEAEAVFEELKESGLKPRTKAYNALLKGYVK-------MGYL-------KDAEFVVSEMER-SGVLPDEHTYSLLIDAYA 381 (664)
Q Consensus 317 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~ 381 (664)
++|..+|++.+... +-+...|..++..+.. .|++ ++|..+|++..+ ... -+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 67888998888753 3367788888777753 5775 889999999887 332 25678888899999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHH
Q 006012 382 NAGRWESARIVLKEMEVSHAKPNSF-IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTF-GKYNCLHHA 459 (664)
Q Consensus 382 ~~g~~~~A~~l~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~~~~A 459 (664)
+.|++++|..+|++..+... .+.. .|..++..+.+.|++++|..+|++..+.. +.+...|....... ...|+.++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999887432 2233 78888888888899999999998888764 33444554433332 236888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012 460 MAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG-YFP--CTTTYNIMINLLGEQERWEDVKRLLGNM 536 (664)
Q Consensus 460 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m 536 (664)
..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888887653 3467788888888888888888888888888863 343 4667888888888888888888888888
Q ss_pred HHC
Q 006012 537 RAQ 539 (664)
Q Consensus 537 ~~~ 539 (664)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.31 E-value=3.4e-08 Score=108.10 Aligned_cols=213 Identities=9% Similarity=-0.001 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012 353 DAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESAR-IVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEM 431 (664)
Q Consensus 353 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 431 (664)
.+..+|+++...- .-+...|-..+..+.+.|+.++|. ++|++.... ++.+...|...+...-+.|++++|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455666666542 235667777777777777777775 777777653 3445556666777777777777777777776
Q ss_pred HHCC---------CCCC------------HHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHc-
Q 006012 432 KSSG---------VEPD------------THFYNVMIDTFGKYNCLHHAMAAFDRMLSE-GIEPDTITWNTLIDCHFKC- 488 (664)
Q Consensus 432 ~~~g---------~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~- 488 (664)
.... -.|+ ..+|...+....+.|..+.|..+|....+. + ......|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 6421 0121 235666666666677777777777777764 2 11222333222222233
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHH
Q 006012 489 GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP--NVVTYTTLVDIYGQSGRFDDAIE 566 (664)
Q Consensus 489 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~ 566 (664)
++.+.|.++|+..++. ++-+...|...++.....|+.+.|..+|++.+.....+ ....|...++.-.+.|+.+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3477777777777766 24455666667776667777777887777777653221 24566777777777777777766
Q ss_pred HHh
Q 006012 567 CLE 569 (664)
Q Consensus 567 ~~~ 569 (664)
+.+
T Consensus 563 v~~ 565 (679)
T 4e6h_A 563 LEK 565 (679)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.31 E-value=2.2e-10 Score=118.32 Aligned_cols=232 Identities=13% Similarity=0.010 Sum_probs=155.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 006012 411 ILAGYRDRGEWQRTFQVLKEMKSS----GVEP-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG--I----EPDTITWN 479 (664)
Q Consensus 411 ll~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~~~~~~~~ 479 (664)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+.+..+.. . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344555666666666666665542 1111 23456666677777777777777777665421 0 11235677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 006012 480 TLIDCHFKCGRYDRAEELFEEMQERGY-FPC----TTTYNIMINLLGEQERWEDVKRLLGNMRAQ----GL-LPNVVTYT 549 (664)
Q Consensus 480 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~ 549 (664)
.+...|...|++++|.+.|++..+... .++ ..++..+...|...|++++|.+.+.+..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788888888999999988888764310 011 246778888899999999999999888772 22 23467788
Q ss_pred HHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-
Q 006012 550 TLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQR---DAEAFAVLQYMKENGLKPD- 625 (664)
Q Consensus 550 ~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~- 625 (664)
.+...|.+.|++++|.+.++. |+++..... -......+..+...|...|+ .++|+.++++. +..|+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~----al~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~ 338 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSK----GMAYSQKAG---DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL 338 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH----HHHHHHHHT---CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH----HHHHHHHcC---CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence 899999999999999988763 333332221 11112246778888888998 77777776665 33333
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006012 626 VVTYTTLMKALIRVDKFHKVFSSYLFF 652 (664)
Q Consensus 626 ~~~~~~l~~a~~~~g~~~~A~~~~~~~ 652 (664)
...+..+...|.+.|++++|...|+..
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 457778999999999999999999844
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.30 E-value=1.7e-10 Score=122.76 Aligned_cols=211 Identities=11% Similarity=0.021 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012 421 WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCL-HHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFE 499 (664)
Q Consensus 421 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 499 (664)
+++++..+++..... +.+...+..+...+...|++ ++|+..|++..+.. +.+...|..+..+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445566666555432 45677888888888888888 88888888888764 3457888899999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CChH
Q 006012 500 EMQERGYFPCTTTYNIMINLLGEQ---------ERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQS--------GRFD 562 (664)
Q Consensus 500 ~m~~~~~~p~~~t~~~ll~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~ 562 (664)
+..+.. |+...+..+...+... |++++|.+.+++..+.... +...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998875 6678888888899888 9999999999999886433 688899999999888 8888
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012 563 DAIECLEGLSDQAVNAFRVMRTDGLKP----SNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIR 638 (664)
Q Consensus 563 ~A~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~ 638 (664)
+|++.++ +.... .| +...|..+..+|...|++++|++.|+++.+.. +.+...+..+..++..
T Consensus 239 ~A~~~~~-----------~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~ 304 (474)
T 4abn_A 239 QALSAYA-----------QAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEF 304 (474)
T ss_dssp HHHHHHH-----------HHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----------HHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 8887754 33331 34 67789999999999999999999999999842 3356788999999999
Q ss_pred cCCHhHHHHHHH
Q 006012 639 VDKFHKVFSSYL 650 (664)
Q Consensus 639 ~g~~~~A~~~~~ 650 (664)
.|++++|.+.++
T Consensus 305 lg~~~eAi~~~~ 316 (474)
T 4abn_A 305 LSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 999999998776
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.29 E-value=6.6e-10 Score=101.52 Aligned_cols=165 Identities=13% Similarity=0.067 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012 370 EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDT 449 (664)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 449 (664)
..+|..+...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+....... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 3444444444444555555555554444432 2234444444445555555555555554444332 2234444444445
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006012 450 FGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDV 529 (664)
Q Consensus 450 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 529 (664)
+...++++.|...+.+..+.. +.+...+..+...|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 555555555555555554432 2344555555555566666666666666555544 34455555555666666666666
Q ss_pred HHHHHHHHH
Q 006012 530 KRLLGNMRA 538 (664)
Q Consensus 530 ~~~~~~m~~ 538 (664)
.+.+++.++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665555
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.28 E-value=2.7e-10 Score=121.09 Aligned_cols=213 Identities=8% Similarity=0.008 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006012 351 LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRW-ESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLK 429 (664)
Q Consensus 351 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 429 (664)
++++.+.++....... .+...+..+...|...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444445554443321 2555666666666666666 66666666665543 3345666666666666667777776666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHH
Q 006012 430 EMKSSGVEPDTHFYNVMIDTFGKY---------NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC--------GRYD 492 (664)
Q Consensus 430 ~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~~ 492 (664)
+..+. .|+...+..+...+... |++++|+..+++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66655 35556666666677776 77777777777777654 34567777777777777 7888
Q ss_pred HHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012 493 RAEELFEEMQERGYF---PCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE 569 (664)
Q Consensus 493 ~A~~~~~~m~~~~~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 569 (664)
+|++.|++..+.. + .+...|..+..+|...|++++|.+.+++..+.... +...+..+..++...|++++|++.+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888887764 3 47778888888888888888888888888775432 56677888888888888888877655
Q ss_pred h
Q 006012 570 G 570 (664)
Q Consensus 570 ~ 570 (664)
.
T Consensus 317 ~ 317 (474)
T 4abn_A 317 K 317 (474)
T ss_dssp T
T ss_pred c
Confidence 3
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=2.4e-10 Score=118.04 Aligned_cols=229 Identities=8% Similarity=-0.052 Sum_probs=122.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CC----CCHHHHH
Q 006012 271 VIVGFAKAGDASKAMRFLGMAQGV----GLSP-KTATYAAVITALSNSGRTIEAEAVFEELKESG--LK----PRTKAYN 339 (664)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--~~----p~~~~~~ 339 (664)
....+...|++++|++.|++..+. +-.+ ...+|..+...+...|++++|...+++..+.. .. ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566677777777777777653 1111 23566777777777777777777777665421 10 0134566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC-CCCHHHHH
Q 006012 340 ALLKGYVKMGYLKDAEFVVSEMERSGVL-PD----EHTYSLLIDAYANAGRWESARIVLKEMEVS----HA-KPNSFIYS 409 (664)
Q Consensus 340 ~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~-~~~~~~~~ 409 (664)
.+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6667777777777777777666532100 11 235566666666777777777666666541 11 23344556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 006012 410 RILAGYRDRGEWQRTFQVLKEMKSS----GVEPDTHFYNVMIDTFGKYNC---LHHAMAAFDRMLSEGIEP-DTITWNTL 481 (664)
Q Consensus 410 ~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~-~~~~~~~l 481 (664)
.+...+.+.|++++|...+++..+. +.+.....+..+...+...|+ +++|..+++.. +..+ ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 6666666666666666666654432 111111223344444555555 34444443332 1111 12234444
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 006012 482 IDCHFKCGRYDRAEELFEEMQ 502 (664)
Q Consensus 482 i~~~~~~g~~~~A~~~~~~m~ 502 (664)
...|.+.|++++|.+.|++..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 455555555555555555443
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=2.9e-11 Score=120.61 Aligned_cols=172 Identities=13% Similarity=0.102 Sum_probs=124.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----
Q 006012 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV-------GLSPKTATYAAVITALSNSGRTIEAEAVFEELKES----- 329 (664)
Q Consensus 262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 329 (664)
+.+..++..+...|...|++++|...|+++.+. ..+....++..+...+...|++++|...|++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 334667888889999999999999999888762 22334667888889999999999999999887753
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 006012 330 -GL-KPRTKAYNALLKGYVKMGYLKDAEFVVSEMERS------GV-LPDEHTYSLLIDAYANAGRWESARIVLKEMEVS- 399 (664)
Q Consensus 330 -~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~- 399 (664)
+. +....++..+...|...|++++|...++++.+. +. .....++..+...|...|++++|+..+++....
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22 223567788888888889988888888887653 11 123456677778888888888888888877653
Q ss_pred -----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 400 -----H-AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS 433 (664)
Q Consensus 400 -----~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 433 (664)
+ .+....++..+...|...|++++|...++++.+
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 112234566677777777777777777777654
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=3.1e-11 Score=120.40 Aligned_cols=170 Identities=14% Similarity=0.112 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 006012 299 KTATYAAVITALSNSGRTIEAEAVFEELKES-------GLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERS------G 365 (664)
Q Consensus 299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g 365 (664)
+..++..+...+...|++++|..+|+++.+. ..+....++..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4667888999999999999999999998763 22334567888888999999999999999887753 1
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 006012 366 V-LPDEHTYSLLIDAYANAGRWESARIVLKEMEVS------H-AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS--- 434 (664)
Q Consensus 366 ~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--- 434 (664)
- .....++..+...|...|++++|...+++..+. + .+.....+..+...+...|++++|.+.++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223566777888888888888888888877653 1 1223345666666777777777777777666542
Q ss_pred ---CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 006012 435 ---GVEP-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLS 468 (664)
Q Consensus 435 ---g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 468 (664)
+..| ...++..+...|...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 233455556666666666666666665553
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.22 E-value=6.6e-09 Score=106.70 Aligned_cols=231 Identities=13% Similarity=0.089 Sum_probs=139.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC----CCHHH
Q 006012 409 SRILAGYRDRGEWQRTFQVLKEMKS----SGVE--P-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE----PDTIT 477 (664)
Q Consensus 409 ~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~ 477 (664)
..+...+...|++++|...+++... .+.. | ....+..+...+...|++++|...+++..+.... .....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 3444455555555555555555432 1211 2 2234455666667777777777777766543211 12356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-C-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 006012 478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFP-C-TTTYN----IMINLLGEQERWEDVKRLLGNMRAQGLLP---NVVTY 548 (664)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~-~~t~~----~ll~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~ 548 (664)
+..+...+...|++++|...+++.....-.+ . ..... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 6777778888888888888888876431111 1 11111 23344668889999988888876543221 13356
Q ss_pred HHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC
Q 006012 549 TTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMKEN----GLK 623 (664)
Q Consensus 549 ~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~ 623 (664)
..+...+...|++++|...++...+. . ...|..++. ..+..+..++...|+.++|...+++..+. |..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~----~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~ 329 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNEN----A---RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI 329 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----H---HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH----H---HhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHH
Confidence 77788899999999999887643322 1 222322233 25667788899999999999999988752 221
Q ss_pred ----CCHHHHHHHHHHHHhcCCHhHHH
Q 006012 624 ----PDVVTYTTLMKALIRVDKFHKVF 646 (664)
Q Consensus 624 ----p~~~~~~~l~~a~~~~g~~~~A~ 646 (664)
........++..+...+.++++.
T Consensus 330 ~~~~~~g~~~~~ll~~~~~~~~~~~~~ 356 (373)
T 1hz4_A 330 SHFVIEGEAMAQQLRQLIQLNTLPELE 356 (373)
T ss_dssp HHHHTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHccHHHHHHHHHHHhCCCCchHH
Confidence 12234556777777777765544
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.20 E-value=1.7e-09 Score=111.54 Aligned_cols=230 Identities=10% Similarity=-0.019 Sum_probs=150.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----C-CC-CCHHHHHH
Q 006012 412 LAGYRDRGEWQRTFQVLKEMKSSGV-EP----DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE----G-IE-PDTITWNT 480 (664)
Q Consensus 412 l~~~~~~g~~~~a~~~~~~m~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~-~~~~~~~~ 480 (664)
...+...|++++|...|++..+... .+ ...++..+...|...|+++.|...+.+..+. + .. ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445666777777777776654310 12 2345666777777777777777777766542 1 01 12446777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 006012 481 LIDCHFKCGRYDRAEELFEEMQER----GYF-PCTTTYNIMINLLGEQERWEDVKRLLGNMRA-----QGLLPNVVTYTT 550 (664)
Q Consensus 481 li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 550 (664)
+...|...|++++|.+.|++..+. +.. ....++..+...|...|++++|.+.+.+..+ .... ...++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence 788888888888888888877652 111 1134677778888888888888888888876 4322 3677888
Q ss_pred HHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-H
Q 006012 551 LVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQR---DAEAFAVLQYMKENGLKPD-V 626 (664)
Q Consensus 551 li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~ 626 (664)
+...|.+.|++++|...++.. +++.. ..+-......+..+...+...|+ .++|+.++++ .+..|+ .
T Consensus 267 la~~~~~~g~~~~A~~~~~~a----l~~~~---~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~ 336 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEG----LDHIT---ARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIE 336 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH----HHHCC---TTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH----HHHHH---HcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHH
Confidence 888899999999888876522 22111 11111123356666777777788 7777777665 233333 3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006012 627 VTYTTLMKALIRVDKFHKVFSSYLFF 652 (664)
Q Consensus 627 ~~~~~l~~a~~~~g~~~~A~~~~~~~ 652 (664)
..+..+...|.+.|++++|...|+..
T Consensus 337 ~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 337 ACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 56678888999999999999998844
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.20 E-value=4.3e-09 Score=108.42 Aligned_cols=306 Identities=9% Similarity=-0.019 Sum_probs=207.3
Q ss_pred CCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhC--CCC--CCHHHHHHHHHHH--HhcCChHHHH---------HHHHH
Q 006012 263 LDGQLLNDVIVGF--AKAGDASKAMRFLGMAQGV--GLS--PKTATYAAVITAL--SNSGRTIEAE---------AVFEE 325 (664)
Q Consensus 263 ~d~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~--g~~--~~~~~~~~li~~~--~~~g~~~~A~---------~l~~~ 325 (664)
+...+-+.|-..| ...+++++|.++++++.+. .+. .+...|-.++..- ...+....+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4444555555555 7789999999999887542 122 2344444444321 1112222222 55555
Q ss_pred HHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012 326 LKESGLKPR----TKAYNALLKGYVKMGYLKDAEFVVSEMERSGV-LPD----EHTYSLLIDAYANAGRWESARIVLKEM 396 (664)
Q Consensus 326 m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m 396 (664)
+.....+.+ ...+......+...|++++|...+++..+... .++ ..++..+...|...|++++|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 543211111 11233345566788999999999999875421 122 457788899999999999999999887
Q ss_pred HhcCC--C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 006012 397 EVSHA--K----PNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS----GVE-PDTHFYNVMIDTFGKYNCLHHAMAAFDR 465 (664)
Q Consensus 397 ~~~~~--~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 465 (664)
.+... . ....+++.+...|...|++++|.+.+.+..+. +.. ....++..+...|...|++++|...+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 65311 1 12457788899999999999999999887652 211 1235778888999999999999999999
Q ss_pred HHH-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHH
Q 006012 466 MLS-----EGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER----GYFPCTTTYNIMINLLGEQER---WEDVKRLL 533 (664)
Q Consensus 466 m~~-----~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~t~~~ll~~~~~~g~---~~~a~~~~ 533 (664)
..+ .. +....++..+...|.+.|++++|...+++..+. +-+.....+..+...+...++ +.+|...+
T Consensus 248 al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 248 AAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 886 43 233678888999999999999999999998764 222234456666667777888 67777776
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHhhhH
Q 006012 534 GNMRAQGLLP-NVVTYTTLVDIYGQSGRFDDAIECLEGLS 572 (664)
Q Consensus 534 ~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 572 (664)
++ .+..| ....+..+...|.+.|++++|.+.++...
T Consensus 327 ~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 327 EK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Hh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 65 22222 23566788999999999999999876433
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=1e-08 Score=105.33 Aligned_cols=163 Identities=10% Similarity=-0.003 Sum_probs=95.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHH
Q 006012 270 DVIVGFAKAGDASKAMRFLGMAQGVGLSPKT----ATYAAVITALSNSGRTIEAEAVFEELKESGL-KPR----TKAYNA 340 (664)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~----~~~~~~ 340 (664)
.....+...|++++|...+++........+. ..++.+...+...|++++|.+.+++...... ..+ ..+++.
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3444566778888888888887764322222 2456666777788888888888877654211 111 123455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----CHHHHH
Q 006012 341 LLKGYVKMGYLKDAEFVVSEMERS----GVL--P-DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKP----NSFIYS 409 (664)
Q Consensus 341 li~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~----~~~~~~ 409 (664)
+...+...|++++|...+++..+. +.. | ...++..+...|...|++++|...+++........ ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 666677777777777777766532 111 1 12344556666677777777777776665432111 123444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 006012 410 RILAGYRDRGEWQRTFQVLKEMK 432 (664)
Q Consensus 410 ~ll~~~~~~g~~~~a~~~~~~m~ 432 (664)
.+...+...|++++|...+++..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555566666655555543
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=5e-09 Score=95.12 Aligned_cols=164 Identities=16% Similarity=0.100 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006012 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGY 345 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 345 (664)
..+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 455666777777888888888887776543 3456777777778888888888888888777653 23566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012 346 VKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTF 425 (664)
Q Consensus 346 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 425 (664)
...|++++|.+.++++.+... .+...+..+...|...|++++|...+++..... +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777777766532 256667777777777777777777777776553 345566666666777777777777
Q ss_pred HHHHHHHH
Q 006012 426 QVLKEMKS 433 (664)
Q Consensus 426 ~~~~~m~~ 433 (664)
..++.+.+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666554
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.14 E-value=5.1e-09 Score=95.07 Aligned_cols=95 Identities=12% Similarity=-0.019 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLL 520 (664)
Q Consensus 441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 520 (664)
..+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.++++.+.. +.+...+..+...+
T Consensus 77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 154 (186)
T 3as5_A 77 KVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSY 154 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHH
Confidence 333334444444444444444444443322 1233444444444444444444444444444432 22344444444444
Q ss_pred HhcCCHHHHHHHHHHHH
Q 006012 521 GEQERWEDVKRLLGNMR 537 (664)
Q Consensus 521 ~~~g~~~~a~~~~~~m~ 537 (664)
...|++++|.+.++++.
T Consensus 155 ~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 155 EQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44444444444444443
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.10 E-value=3.3e-09 Score=117.48 Aligned_cols=168 Identities=15% Similarity=0.084 Sum_probs=145.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006012 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL 341 (664)
Q Consensus 262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 341 (664)
+-+...++.|...|.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|++.|++.++.... +...|+.+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3456788999999999999999999999998864 345889999999999999999999999999886432 68899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 006012 342 LKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEW 421 (664)
Q Consensus 342 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 421 (664)
..+|.+.|++++|.+.|++..+.... +..+|+.+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 99999999999999999999886543 68899999999999999999999999998765 45678899999999999999
Q ss_pred HHHHHHHHHHHH
Q 006012 422 QRTFQVLKEMKS 433 (664)
Q Consensus 422 ~~a~~~~~~m~~ 433 (664)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888877654
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.05 E-value=3e-08 Score=93.86 Aligned_cols=196 Identities=12% Similarity=0.010 Sum_probs=141.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 006012 333 PRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRIL 412 (664)
Q Consensus 333 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll 412 (664)
.|...+......+...|++++|...|++..+....++...+..+...|...|++++|+..+++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35677888888888999999999999988876544577777778888889999999999998888764 33566788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 006012 413 AGYRDRGEWQRTFQVLKEMKSSGVEPDT-------HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD---TITWNTLI 482 (664)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li 482 (664)
..+...|++++|...+++..+.. +.+. ..|..+...+...|++++|+..|++..+.. |+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence 88889999999999998887753 3344 456777777888888888888888887653 43 45666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012 483 DCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG 540 (664)
Q Consensus 483 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 540 (664)
.+|...| ..+++++...+ ..+...|.... ....+.+++|...+++..+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 6665443 34455554443 23344444433 234456788888888888753
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.04 E-value=1.7e-09 Score=105.89 Aligned_cols=173 Identities=12% Similarity=0.074 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 006012 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQER------GY-FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ------G 540 (664)
Q Consensus 474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~------~ 540 (664)
...++..+...|...|++++|+..++++.+. +- +....++..+...+...|++++|.+.+.++.+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3556777777888888888888888877643 11 223456777888888888888888888887754 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 541 L-LPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYMK 618 (664)
Q Consensus 541 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 618 (664)
- .....++..+...|...|++++|++.++.. ++.+...... -.| ...++..+..+|...|++++|+.+++++.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----l~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA----LEIYATRLGP-DDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH----HHHHHHHSCT-TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 123567888899999999999999887633 3333322211 122 24578889999999999999999999988
Q ss_pred HC------------------------------------------------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 619 EN------------------------------------------------GLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 619 ~~------------------------------------------------g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
+. ..+....++..+..+|.+.|++++|.+.|+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 276 (283)
T 3edt_B 197 TRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLED 276 (283)
T ss_dssp HHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 63 112234578889999999999999999998
Q ss_pred H
Q 006012 651 F 651 (664)
Q Consensus 651 ~ 651 (664)
.
T Consensus 277 ~ 277 (283)
T 3edt_B 277 C 277 (283)
T ss_dssp H
T ss_pred H
Confidence 4
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.04 E-value=1.2e-08 Score=112.90 Aligned_cols=159 Identities=6% Similarity=-0.011 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 407 IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHF 486 (664)
Q Consensus 407 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 486 (664)
.|+.+...|.+.|++++|++.|++..+.. +-+..++..+...|.+.|++++|+..|++.++.. +-+...|..+..+|.
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444444444444444444443322 2233444444444445555555555554444432 123445555555555
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 006012 487 KCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIE 566 (664)
Q Consensus 487 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 566 (664)
+.|++++|++.|++.++.+ +-+...|+.+..++.+.|++++|.+.+++.++.... +...+..+..+|...|++++|.+
T Consensus 89 ~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHHH
Confidence 5555555555555555443 334455555555555555555555555555553211 34555555555555555555555
Q ss_pred HHh
Q 006012 567 CLE 569 (664)
Q Consensus 567 ~~~ 569 (664)
.++
T Consensus 167 ~~~ 169 (723)
T 4gyw_A 167 RMK 169 (723)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.04 E-value=3.2e-08 Score=93.73 Aligned_cols=197 Identities=13% Similarity=0.034 Sum_probs=149.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006012 263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALL 342 (664)
Q Consensus 263 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 342 (664)
.|...+......+...|++++|++.|++..+...+++...+..+..++.+.|++++|++.|++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567788888899999999999999999888653377788888999999999999999999999876433 567888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHH
Q 006012 343 KGYVKMGYLKDAEFVVSEMERSGVLPDE-------HTYSLLIDAYANAGRWESARIVLKEMEVSHAKP--NSFIYSRILA 413 (664)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~--~~~~~~~ll~ 413 (664)
..+...|++++|...+++..+.... +. ..|..+...+...|++++|+..|++..+.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 9999999999999999998876432 44 457788888899999999999999998753 22 3566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 006012 414 GYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG 470 (664)
Q Consensus 414 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 470 (664)
+|...| ...++++...+ ..+...|..... ...+.+++|...+++..+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 776544 33445555443 233444444332 33456889999999988764
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.97 E-value=5.3e-09 Score=102.22 Aligned_cols=120 Identities=12% Similarity=0.029 Sum_probs=60.0
Q ss_pred hcCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHH
Q 006012 312 NSGRTIEAEAVFEELKES-------GLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERS------GV-LPDEHTYSLLI 377 (664)
Q Consensus 312 ~~g~~~~A~~l~~~m~~~-------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~li 377 (664)
..|++++|+..|++..+. ..+....++..+...|...|++++|...++++.+. +- .....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345555555555554431 11123455666666666677777777666666542 11 11234555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012 378 DAYANAGRWESARIVLKEMEVSH-------AKPNSFIYSRILAGYRDRGEWQRTFQVLKEM 431 (664)
Q Consensus 378 ~~~~~~g~~~~A~~l~~~m~~~~-------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 431 (664)
..|...|++++|...+++..... .+....++..+...|...|++++|...++++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666666554320 0112233444444444444444444444443
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.92 E-value=3e-07 Score=89.43 Aligned_cols=242 Identities=10% Similarity=0.001 Sum_probs=161.6
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006012 275 FAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDA 354 (664)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 354 (664)
..-.|++..++.-...+.. ......-..+.+++...|++... ....|....+..+...+ ..+ |
T Consensus 23 ~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 4456888887773332211 22233444455777777776642 12334444444444433 322 6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHA-KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS 433 (664)
Q Consensus 355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 433 (664)
...+++....+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777655 44666667888889999999999999998876553 24667788888999999999999999999877
Q ss_pred CCCCC-----CHHHHHHHHHHH--hccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006012 434 SGVEP-----DTHFYNVMIDTF--GKYN--CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER 504 (664)
Q Consensus 434 ~g~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 504 (664)
. .| +..+...+..++ ...| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 45 355566666553 2233 899999999998765 355444455555888999999999999876543
Q ss_pred -----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012 505 -----G----YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG 540 (664)
Q Consensus 505 -----~----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 540 (664)
. -+.+..++..++......|+ +|.+++.++.+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 0 13456666566666666676 8889999998863
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=1.1e-07 Score=80.84 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006012 267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV 346 (664)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 346 (664)
.+..+...+...|++++|.++|+.+.+.+ +.+...+..+...+...|++++|.+.|+++.+.+. .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 35556666777777777777777766543 33556666666777777777777777777665432 24556666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012 347 KMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEV 398 (664)
Q Consensus 347 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 398 (664)
..|++++|.+.++++.+... .+..++..+...|.+.|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666665432 2455566666666666666666666666554
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.85 E-value=1.3e-07 Score=93.27 Aligned_cols=92 Identities=11% Similarity=-0.047 Sum_probs=44.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 006012 271 VIVGFAKAGDASKAMRFLGMAQGV----GLSPK-TATYAAVITALSNSGRTIEAEAVFEELKESGLK-PR----TKAYNA 340 (664)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~----~~~~~~ 340 (664)
....|...|++++|.+.|++.... |-+++ ..+|+.+..+|.+.|++++|+..|++..+.... .+ ..+++.
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555666666666666555431 21111 345555666666666666666666555431100 00 223444
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHH
Q 006012 341 LLKGYVKM-GYLKDAEFVVSEME 362 (664)
Q Consensus 341 li~~~~~~-g~~~~a~~~~~~m~ 362 (664)
+...|... |++++|...+++..
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHH
Confidence 44444443 55555554444443
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.84 E-value=1.6e-07 Score=79.79 Aligned_cols=126 Identities=14% Similarity=0.248 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006012 373 YSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK 452 (664)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 452 (664)
|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4444555555555555555555554432 2234444444444444455555554444444332 2233333444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012 453 YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEM 501 (664)
Q Consensus 453 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 501 (664)
.|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.++++
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 444444444444443322 122333333444444444444444444433
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.84 E-value=7.1e-08 Score=95.27 Aligned_cols=212 Identities=10% Similarity=0.058 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 006012 280 DASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES----GLKPR-TKAYNALLKGYVKMGYLKDA 354 (664)
Q Consensus 280 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a 354 (664)
++++|.+.|+.+ +..|...|++++|.+.|++..+. |..++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 34567788888888888776542 21111 35677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 006012 355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR-GEWQRTFQVLKEMKS 433 (664)
Q Consensus 355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~ 433 (664)
...+++..+.. ...|+...+ ..++..+...|... |++++|+..|++..+
T Consensus 97 ~~~~~~Al~l~---------------~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 97 VDSLENAIQIF---------------THRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHHHHHH---------------HHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------HHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 77777665421 111111111 11233334444443 555555544444433
Q ss_pred CCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 434 SGV-EPD----THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDT------ITWNTLIDCHFKCGRYDRAEELFEEMQ 502 (664)
Q Consensus 434 ~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~ 502 (664)
... ..+ ..++..+...+.+.|++++|...|++..+....... ..|..+..+|...|++++|...|++..
T Consensus 147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 100 000 234555666666666666666666666654322111 145556666667777777777777665
Q ss_pred HCCCCCC------HHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 006012 503 ERGYFPC------TTTYNIMINLLG--EQERWEDVKRLLGNMRA 538 (664)
Q Consensus 503 ~~~~~p~------~~t~~~ll~~~~--~~g~~~~a~~~~~~m~~ 538 (664)
+.. |+ ...+..++.++. ..+++++|...++++..
T Consensus 227 ~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 227 SED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp CC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred hhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 432 11 112333444443 34567777777766543
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.81 E-value=2.6e-07 Score=86.05 Aligned_cols=160 Identities=13% Similarity=0.066 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006012 270 DVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAA----------------VITALSNSGRTIEAEAVFEELKESGLKP 333 (664)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~~~~p 333 (664)
.....+...|++++|+..|++..+.. +.+...|.. +..++.+.|++++|...|++..+....
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 86 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN- 86 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-
Confidence 34455678899999999998887643 223445555 566666666666666666666554322
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCCHHHHHHH
Q 006012 334 RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGR--WESARIVLKEMEVSHAKPNSFIYSRI 411 (664)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~~~~~~~~~~~~l 411 (664)
+...+..+..++...|++++|...|++..+..+. +..+|..+...|...|. .+.+...++.... ..|....+...
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~ 163 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRD 163 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHH
Confidence 4555666666666666666666666666554322 45555555555544432 2233333333321 11222223333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 006012 412 LAGYRDRGEWQRTFQVLKEMKSS 434 (664)
Q Consensus 412 l~~~~~~g~~~~a~~~~~~m~~~ 434 (664)
..++...|++++|...|++..+.
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 34444455555555555555543
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.80 E-value=1.7e-07 Score=87.27 Aligned_cols=139 Identities=15% Similarity=0.072 Sum_probs=102.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012 479 NTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQS 558 (664)
Q Consensus 479 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 558 (664)
+.+..+|.+.|++++|+..|++.++.. +-+...+..+...+...|++++|...+++.++.... +..++..+..+|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 447888999999999999999999886 567889999999999999999999999999986433 678888888888766
Q ss_pred CChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 559 GRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL--ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMK 634 (664)
Q Consensus 559 g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 634 (664)
|+.+.+ .+...++... .|+.. .+..+..++...|++++|+..|++.++ +.|+......+.+
T Consensus 136 ~~~~~~---------~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 136 AEQEKK---------KLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHH---------HHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred hHHHHH---------HHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 543322 1222233332 34433 445566677778999999999999988 6788665544443
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.79 E-value=2.8e-07 Score=89.19 Aligned_cols=188 Identities=11% Similarity=0.028 Sum_probs=114.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC-CHH
Q 006012 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK---TATYAAVITALSNSGRTIEAEAVFEELKESGL-KP-RTK 336 (664)
Q Consensus 262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p-~~~ 336 (664)
+.+...+-.+...+.+.|++++|++.|+.+.+.. +.+ ...+..+..++.+.|++++|...|++..+... .| ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3455666677778888999999999999888753 223 66788888899999999999999999887532 12 245
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 006012 337 AYNALLKGYVK--------MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIY 408 (664)
Q Consensus 337 ~~~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~ 408 (664)
.+..+..++.. .|++++|...|+++.+.... +......+.......+ .. ...+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~----------~~--------~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRA----------KL--------ARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHH----------HH--------HHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHH----------HH--------HHHH
Confidence 66777778888 88899999999888875332 2222221110000000 00 0113
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHHC
Q 006012 409 SRILAGYRDRGEWQRTFQVLKEMKSSGVE--PDTHFYNVMIDTFGKY----------NCLHHAMAAFDRMLSE 469 (664)
Q Consensus 409 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 469 (664)
..+...|.+.|++++|+..|+.+.+.... .....+..+..+|... |++++|...|+.+.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 34455556666666666666665543211 0233445555555443 5666666666666554
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.78 E-value=1.8e-06 Score=83.94 Aligned_cols=61 Identities=10% Similarity=-0.044 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 303 YAAVITALSNSGRTIEAEAVFEELKESGL-KPRTKAYNALLKGYVKMGYLKDAEFVVSEMER 363 (664)
Q Consensus 303 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 363 (664)
+..+..++...|++++|++++.+.+..+. .-+...+-.++..+.+.|+.+.|.+.+++|.+
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444444444444444444444433221 01233334444444444444444444444433
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.75 E-value=3.5e-06 Score=82.70 Aligned_cols=219 Identities=8% Similarity=0.008 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CC
Q 006012 280 DASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG--RTIEAEAVFEELKESGLKPRTKAYNALLKGY----VKM---GY 350 (664)
Q Consensus 280 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~----~~~---g~ 350 (664)
..++|+++++.++..+ +-+...|+.-...+...| ++++++++++.+...+.+ +..+|+.--..+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 3457888887777654 334666777777777777 788888888887776443 445555444444 444 56
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC------HH
Q 006012 351 LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWE--SARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE------WQ 422 (664)
Q Consensus 351 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~------~~ 422 (664)
++++.++++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++++.+.+ +-|...|+.....+...++ ++
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 77777777777766544 6777777666666777766 7777777777655 3455666655555555444 55
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012 423 RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHH-AMAAFDRMLSEG--IEPDTITWNTLIDCHFKCGRYDRAEELFE 499 (664)
Q Consensus 423 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 499 (664)
++++.++.+.... +-|...|+-+-..+.+.|.... +..+...+.+.+ -..+...+..+...|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 5555555544433 3344445444444444443222 222333222211 01234444455555555555555555555
Q ss_pred HHHH
Q 006012 500 EMQE 503 (664)
Q Consensus 500 ~m~~ 503 (664)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.73 E-value=6.3e-07 Score=86.71 Aligned_cols=100 Identities=12% Similarity=-0.034 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHH
Q 006012 299 KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR---TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVL-P-DEHTY 373 (664)
Q Consensus 299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~-~~~~~ 373 (664)
+...+..+...+.+.|++++|.+.|+++.+.... + ...+..+..+|.+.|++++|...|++..+.... + ...++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4555666666666666677777666666654321 2 455556666666666666666666666654221 1 13344
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHhc
Q 006012 374 SLLIDAYAN--------AGRWESARIVLKEMEVS 399 (664)
Q Consensus 374 ~~li~~~~~--------~g~~~~A~~l~~~m~~~ 399 (664)
..+..++.. .|++++|+..|++....
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 455555555 55555555555555543
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.71 E-value=9.5e-08 Score=106.21 Aligned_cols=173 Identities=8% Similarity=-0.068 Sum_probs=110.7
Q ss_pred HHcCCHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006012 381 ANAGRWESARIVLKEME--------VSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK 452 (664)
Q Consensus 381 ~~~g~~~~A~~l~~~m~--------~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 452 (664)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|.+.|+++.+.. +.+...+..+...+.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55667777777777665 222 3345566666677777777777777777766543 3456666777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012 453 YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRL 532 (664)
Q Consensus 453 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 532 (664)
.|++++|...|++..+.. +.+...|..+..+|.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777776653 2345666677777777777777 77777777665 44566777777777777777777777
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 006012 533 LGNMRAQGLLPN-VVTYTTLVDIYGQSGR 560 (664)
Q Consensus 533 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 560 (664)
++++.+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 7776654 333 4555566666555444
No 99
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.71 E-value=4.5e-07 Score=90.21 Aligned_cols=190 Identities=11% Similarity=0.008 Sum_probs=122.1
Q ss_pred HHhccCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 006012 449 TFGKYNCLHHAMAAFDRMLSE----GIE-PDTITWNTLIDCHFKCGRYDRAEELFEEMQER----GYFP-CTTTYNIMIN 518 (664)
Q Consensus 449 ~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~ 518 (664)
.|...|++++|...|.+..+. +-. .-..+|+.+...|.+.|++++|+..|++..+. |-.. ...+++.+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555554432 100 01345667777888888888888888876543 2111 1356777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-H
Q 006012 519 LLGEQERWEDVKRLLGNMRAQGLLP-----NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-L 592 (664)
Q Consensus 519 ~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~ 592 (664)
.|.. |++++|.+.+++.++..... ...++..+...|.+.|++++|+..++... .++. +.+..+.. .
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~~---~~~~~~~~~~ 196 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK----SMYK---EMENYPTCYK 196 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHHH---HTTCHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHH---HcCChhHHHH
Confidence 8888 99999999998887631111 14678889999999999999999876333 2222 22222222 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD------VVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
.+..++.++...|++++|+..+++.. . .|+ ......++.++ ..|+.+++.++++
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~~~ 256 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCR 256 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHHHh
Confidence 67777788888899999999999998 3 332 23455566665 5677777766433
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.69 E-value=1.8e-07 Score=103.88 Aligned_cols=174 Identities=12% Similarity=-0.050 Sum_probs=129.3
Q ss_pred HHcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006012 276 AKAGDASKAMRFLGMAQ--------GVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK 347 (664)
Q Consensus 276 ~~~g~~~~A~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 347 (664)
...|++++|++.++++. +.. +.+...+..+...+.+.|++++|++.|++..+... -+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 56789999999998887 332 44567888888888889999999999988887543 267788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012 348 MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQV 427 (664)
Q Consensus 348 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 427 (664)
.|++++|.+.|++..+.... +...|..+...|.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88889998888888876433 56778888888888888888 88888887764 34667778888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 006012 428 LKEMKSSGVEPDTHFYNVMIDTFGKYNC 455 (664)
Q Consensus 428 ~~~m~~~g~~~~~~~~~~li~~~~~~g~ 455 (664)
|++..+.. +.+...+..+..++...+.
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 88776543 2234556666666555443
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.69 E-value=0.00011 Score=77.84 Aligned_cols=341 Identities=7% Similarity=-0.076 Sum_probs=172.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHH-cCCC-CCHHHHHHHHHHHH----hcCCH
Q 006012 279 GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR-TIEAEAVFEELKE-SGLK-PRTKAYNALLKGYV----KMGYL 351 (664)
Q Consensus 279 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~-~~~~-p~~~~~~~li~~~~----~~g~~ 351 (664)
|+++.+..+|++.... .|+...|...+....+.+. .+....+|+.... .|.. .+...|...+..+. ..+++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 5666666666666653 3566666666666655553 2344555555544 2322 24455555555433 23455
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 006012 352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYA-------------NAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR 418 (664)
Q Consensus 352 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-------------~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~ 418 (664)
+.+.++|++.+......-...|......-. ..+.+..|..+++.+...-...+...|...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 666666666665321111112221111100 0112233344444333210011333454444432221
Q ss_pred C--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006012 419 G--E-----WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRY 491 (664)
Q Consensus 419 g--~-----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 491 (664)
+ - .+.+..+|+.+.... +.+...|...+..+.+.|+.+.|..++++.... +.+...|. .|....+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence 1 0 344566777766643 445677777777777788888888888888776 33333332 23222221
Q ss_pred HHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012 492 DRAEELFEEMQERG---------Y---FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSG 559 (664)
Q Consensus 492 ~~A~~~~~~m~~~~---------~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 559 (664)
++. ++.+.+.- . ......|...+....+.+..+.|..+|.++ +. ...+..+|......-...|
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHC
Confidence 221 22222110 0 011244566666666677788888888888 32 1234444543332222223
Q ss_pred -ChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012 560 -RFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIR 638 (664)
Q Consensus 560 -~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~ 638 (664)
+++.|..+|+ ...+. ..-+...|...++-..+.|+.+.|..+|+++. .....|...++--..
T Consensus 334 ~d~~~ar~ife-----------~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 334 GSRATPYNIFS-----------SGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFM 396 (493)
T ss_dssp CCSHHHHHHHH-----------HHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHH
T ss_pred CChHHHHHHHH-----------HHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 4666666654 22221 11123456666777777888888888888762 245667777776666
Q ss_pred cCCHhHHHHHHH
Q 006012 639 VDKFHKVFSSYL 650 (664)
Q Consensus 639 ~g~~~~A~~~~~ 650 (664)
.|+.+.+.++++
T Consensus 397 ~G~~~~~r~v~~ 408 (493)
T 2uy1_A 397 VGSMELFRELVD 408 (493)
T ss_dssp HSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 788888877777
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.67 E-value=1.6e-05 Score=77.94 Aligned_cols=221 Identities=9% Similarity=0.017 Sum_probs=172.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHc---C
Q 006012 314 GRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMG--YLKDAEFVVSEMERSGVLPDEHTYSLLIDAY----ANA---G 384 (664)
Q Consensus 314 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g 384 (664)
...++|+++++.++..+.. +...|+.--..+...| +++++++.++.+.....+ +..+|+.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence 3456899999999987543 6677888888888888 999999999999987655 667777665555 555 7
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------H
Q 006012 385 RWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ--RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNC------L 456 (664)
Q Consensus 385 ~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~ 456 (664)
++++++.+++++.+.. +-+..+|+.-.-.+.+.|.++ ++++.++.+.+.. +-|...|+.-...+.+.+. +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 8999999999998875 568888888888888888888 8999999988865 5577788777666667666 8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012 457 HHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR-AEELFEEMQERG--YFPCTTTYNIMINLLGEQERWEDVKRLL 533 (664)
Q Consensus 457 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 533 (664)
+++++.++.++... +-|...|+-+-..+.+.|+... +..+..++.+.+ -..+...+..+...+.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 88888888888765 4578888888888888887544 445666655432 1446778888888888889999999999
Q ss_pred HHHHHC
Q 006012 534 GNMRAQ 539 (664)
Q Consensus 534 ~~m~~~ 539 (664)
+.+.+.
T Consensus 282 ~~l~~~ 287 (306)
T 3dra_A 282 DLLKSK 287 (306)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 888763
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.66 E-value=3.5e-06 Score=78.52 Aligned_cols=175 Identities=10% Similarity=0.030 Sum_probs=85.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 006012 354 AEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG----EWQRTFQVLK 429 (664)
Q Consensus 354 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~ 429 (664)
|.+.|++..+.| +...+..|...|...+++++|+..|++..+.+ +...+..+...|.. + ++++|++.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 334444444432 44444455555555555555555555554432 33444444444444 3 4555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 006012 430 EMKSSGVEPDTHFYNVMIDTFGK----YNCLHHAMAAFDRMLSEGIE-PDTITWNTLIDCHFK----CGRYDRAEELFEE 500 (664)
Q Consensus 430 ~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 500 (664)
+..+.| +...+..|...|.. .+++++|...|++..+.|.. .....+..|...|.. .+++++|+..|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554432 34444445555544 55555555555555544310 014455555555555 5556666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 006012 501 MQERGYFPCTTTYNIMINLLGEQ-E-----RWEDVKRLLGNMRAQG 540 (664)
Q Consensus 501 m~~~~~~p~~~t~~~ll~~~~~~-g-----~~~~a~~~~~~m~~~~ 540 (664)
..+.+ .+...+..|...|... | +.++|.+.+++..+.|
T Consensus 155 A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 55541 1233444444444332 2 5566666666555544
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.65 E-value=3.6e-06 Score=79.29 Aligned_cols=185 Identities=11% Similarity=0.028 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CH-HHHHH
Q 006012 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLS-P-KTATYAAVITALSNSGRTIEAEAVFEELKESGLKP-RT-KAYNA 340 (664)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~-~~~~~ 340 (664)
...+-.+...+.+.|++++|+..|+.+.+.... + ....+..+..++.+.|++++|+..|+++.+..... .. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555667788889999999999998874311 1 13578888899999999999999999988754321 11 24444
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006012 341 LLKGYVK------------------MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAK 402 (664)
Q Consensus 341 li~~~~~------------------~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 402 (664)
+..++.. .|+.++|...|+++.+..+. +..++.+..... .+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~~----- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRLA----- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHHH-----
Confidence 4444443 45677777777777765322 222222111100 0000000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 006012 403 PNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPD----THFYNVMIDTFGKYNCLHHAMAAFDRMLSEG 470 (664)
Q Consensus 403 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 470 (664)
.....+...|.+.|++++|+..|+.+.+.. |+ ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011345567788888888888888877652 32 2567778888888888888888888887764
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.64 E-value=1.3e-07 Score=82.93 Aligned_cols=143 Identities=7% Similarity=-0.125 Sum_probs=95.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012 273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLK 352 (664)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 352 (664)
.++...|++++|++.++...... +.+...+..+...|.+.|++++|++.|++.++.... +..+|..+..+|.+.|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 34445677888888887766432 123445667778888888888888888887775432 6777888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006012 353 DAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIV-LKEMEVSHAKPNSFIYSRILAGYRDRG 419 (664)
Q Consensus 353 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l-~~~m~~~~~~~~~~~~~~ll~~~~~~g 419 (664)
+|...|++..+.... +..+|..+...|.+.|+.++|.+. +++..+.. +-+..+|......+...|
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 888888887775433 567777777788888877665544 46665543 335555665555555544
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.64 E-value=3.2e-07 Score=82.81 Aligned_cols=160 Identities=9% Similarity=-0.022 Sum_probs=98.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHh
Q 006012 269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG-YVK 347 (664)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~-~~~ 347 (664)
..+...+...|++++|...|+.+.+.. +.+...+..+...+.+.|++++|...|++..+.. |+...+..+... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 344556777788888888887766532 3356777777888888888888888887766543 243333222211 112
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 006012 348 MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKP-NSFIYSRILAGYRDRGEWQRTFQ 426 (664)
Q Consensus 348 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~ 426 (664)
.+...+|...+++..+.... +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 22233456666666654322 46667777777777777777777777776654322 24466666667777777776666
Q ss_pred HHHHHH
Q 006012 427 VLKEMK 432 (664)
Q Consensus 427 ~~~~m~ 432 (664)
.|+...
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.63 E-value=4.3e-06 Score=77.94 Aligned_cols=163 Identities=11% Similarity=0.010 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCCHHHHH
Q 006012 334 RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAG----RWESARIVLKEMEVSHAKPNSFIYS 409 (664)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~~~~~~~~~~~ 409 (664)
+...+..|...|...+++++|.+.|++..+.| +...+..|...|.. + +.++|..+|++..+.+ +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 33444444444444555555555555544433 34444444444444 3 4555555555554432 344444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006012 410 RILAGYRD----RGEWQRTFQVLKEMKSSGVE-PDTHFYNVMIDTFGK----YNCLHHAMAAFDRMLSEGIEPDTITWNT 480 (664)
Q Consensus 410 ~ll~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 480 (664)
.+...|.. .+++++|++.|++..+.|.. .....+..|...|.. .++.++|...|++..+.+ .+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHH
Confidence 45555544 55566666666655554311 014555555555555 566677777776666541 23345555
Q ss_pred HHHHHHHc-C-----CHHHHHHHHHHHHHCC
Q 006012 481 LIDCHFKC-G-----RYDRAEELFEEMQERG 505 (664)
Q Consensus 481 li~~~~~~-g-----~~~~A~~~~~~m~~~~ 505 (664)
|..+|.+. | ++++|+..|+...+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 55566543 2 6777777777776665
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.62 E-value=1.2e-06 Score=86.11 Aligned_cols=166 Identities=11% Similarity=0.014 Sum_probs=115.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-H
Q 006012 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYN-A 340 (664)
Q Consensus 262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~-~ 340 (664)
+.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|.+.++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 4445566667777888888888888888877653 3467778888888888888888888888776643 3433322 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcC
Q 006012 341 LLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKP-NSFIYSRILAGYRDRG 419 (664)
Q Consensus 341 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~-~~~~~~~ll~~~~~~g 419 (664)
....+...++.++|...+++..+.... +...+..+...|...|++++|+..|+++.+..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 222355666777777777777765432 67777788888888888888888888887654221 2556777777777777
Q ss_pred CHHHHHHHHHHH
Q 006012 420 EWQRTFQVLKEM 431 (664)
Q Consensus 420 ~~~~a~~~~~~m 431 (664)
+.++|...+++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 777777666654
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.62 E-value=1.3e-06 Score=86.73 Aligned_cols=124 Identities=6% Similarity=0.002 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC---C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-H
Q 006012 441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE---P--DTITWNTLIDCHFKCGRYDRAEELFEEMQER----GYFPC-T 510 (664)
Q Consensus 441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~ 510 (664)
.++..+...|.. |++++|+..|++..+.... + ...+++.+...|.+.|++++|+..|++..+. +..+. .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 345555666666 7777777777666542100 0 1356777778888888888888888887653 21111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHhcCChHHHHHH
Q 006012 511 TTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PN---VVTYTTLVDIYGQSGRFDDAIEC 567 (664)
Q Consensus 511 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~---~~~~~~li~~~~~~g~~~~A~~~ 567 (664)
..+..+...+...|++++|...+++.. .... ++ ......++.++ ..|+.+.+.++
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 255566666777788888888888887 4211 01 12344455555 56676665553
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.61 E-value=9.2e-07 Score=96.30 Aligned_cols=146 Identities=8% Similarity=-0.060 Sum_probs=75.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006012 251 KLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESG 330 (664)
Q Consensus 251 ~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 330 (664)
..+++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...|..+...+.+.|++++|.+.|++..+..
T Consensus 10 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 87 (568)
T 2vsy_A 10 LQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA 87 (568)
T ss_dssp ------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4444443322 2345555556666666666666666666655543 2345555566666666666666666666655543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcC
Q 006012 331 LKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANA---GRWESARIVLKEMEVSH 400 (664)
Q Consensus 331 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~~ 400 (664)
. .+...+..+..+|.+.|++++|.+.+++..+.... +...+..+...+... |+.++|.+.+++..+.+
T Consensus 88 p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 88 P-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 2 24555555666666666666666666665554322 445555555556555 66666666666555443
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.60 E-value=1.7e-07 Score=82.11 Aligned_cols=142 Identities=11% Similarity=-0.037 Sum_probs=76.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012 414 GYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR 493 (664)
Q Consensus 414 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 493 (664)
.+...|++++|+..+....... +.+...+..+...|.+.|++++|++.|++.++.. +-+...|..+..+|.+.|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 3344455555555555544321 1122334445555666666666666666665543 2345566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012 494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRL-LGNMRAQGLLPNVVTYTTLVDIYGQSG 559 (664)
Q Consensus 494 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g 559 (664)
|+..|++..+.+ +-+...|..+...+.+.|+++++.+. +++.++.... ++.+|......+...|
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 666666666654 33455666666666666666544433 4555553221 4555555555555444
No 112
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.59 E-value=0.00015 Score=76.72 Aligned_cols=353 Identities=10% Similarity=-0.002 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhC-CC-CCCHHHHHHHH
Q 006012 195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECD-KI-ELDGQLLNDVI 272 (664)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~-~~-~~d~~~~~~li 272 (664)
+|...+..+-. |+++.|..+|++.... .|+...|..-++-..+.+.. ......+|+..... |. ..+..+|...+
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~-~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQK-KFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC-----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCch-HHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 34444443333 7788888888887764 46777777777666665532 12345666665542 32 33567777777
Q ss_pred HHHH----HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCChHHHHHHHHHHHHcCCCCCH
Q 006012 273 VGFA----KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSN-------------SGRTIEAEAVFEELKESGLKPRT 335 (664)
Q Consensus 273 ~~~~----~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~l~~~m~~~~~~p~~ 335 (664)
..+. ..|+.+.+.++|++++......-...|......-.. .+.+..|..+++.+...-...+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 6543 346677888888888763211112223322221111 12233445555544431001134
Q ss_pred HHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 006012 336 KAYNALLKGYVKMG--Y-----LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIY 408 (664)
Q Consensus 336 ~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~ 408 (664)
..|...+..-...+ - .+.+..+|+++.... ..+...|...+..+.+.|+.++|..+|++.... +.+...|
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHH
Confidence 45655555433221 1 345677888888753 336788888888889999999999999999887 3343333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---C------CCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 006012 409 SRILAGYRDRGEWQRTFQVLKEMKSS---G------VEP---DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTI 476 (664)
Q Consensus 409 ~~ll~~~~~~g~~~~a~~~~~~m~~~---g------~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 476 (664)
.. |....+.++. ++.+.+. . ..+ ....|...+....+.+.++.|..+|+.. +.. ..+..
T Consensus 250 ~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~ 320 (493)
T 2uy1_A 250 LY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPH 320 (493)
T ss_dssp HH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHH
T ss_pred HH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChH
Confidence 32 2221111111 2222211 0 001 1245666666666778899999999998 322 23444
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 477 TWNTLIDCHFKC-GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIY 555 (664)
Q Consensus 477 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 555 (664)
.|......-... ++.+.|..+|+...+.- +-+...+...++...+.|+.+.|..+|+.+. .....|...++.=
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE 394 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYE 394 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 554322222223 36999999999998863 3345556667777788999999999999873 2577888888877
Q ss_pred HhcCChHHHHHHHh
Q 006012 556 GQSGRFDDAIECLE 569 (664)
Q Consensus 556 ~~~g~~~~A~~~~~ 569 (664)
...|+.+.+..+++
T Consensus 395 ~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 395 FMVGSMELFRELVD 408 (493)
T ss_dssp HHHSCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHH
Confidence 88899988887765
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.59 E-value=6.2e-06 Score=77.63 Aligned_cols=186 Identities=10% Similarity=0.040 Sum_probs=103.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH--HHHH
Q 006012 334 RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVL-P-DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS--FIYS 409 (664)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~--~~~~ 409 (664)
+...+..+...+.+.|++++|...|+++.+.... + ....+..+..+|.+.|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666777788888999999999888875332 1 1356777888888889999999998888776432221 2444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HH------------
Q 006012 410 RILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD-TI------------ 476 (664)
Q Consensus 410 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~------------ 476 (664)
.+..++...+.. .+ ..+..+...+...|+.++|...|+++++.. |+ ..
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHH
Confidence 444444432100 00 000111111222334444444444444321 11 11
Q ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 477 -----TWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC---TTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 477 -----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 539 (664)
....+...|.+.|++++|+..|+++++.. +.+ ...+..+..++.+.|+.++|.+.++.+...
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 11234455667777777777777776653 111 134666667777777777777777766665
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.58 E-value=1.3e-06 Score=85.75 Aligned_cols=162 Identities=11% Similarity=0.004 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH-HH
Q 006012 404 NSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNT-LI 482 (664)
Q Consensus 404 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li 482 (664)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...++++.... |+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 33445555555666666666666666655543 3355666666666677777777777776665432 34332222 22
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh
Q 006012 483 DCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP-NVVTYTTLVDIYGQSGRF 561 (664)
Q Consensus 483 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~ 561 (664)
..+.+.++.++|...+++..... +.+...+..+...+...|++++|.+.+.++.+..... +...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 23556667777777777777765 5567777777778888888888888888877753221 256777788888888888
Q ss_pred HHHHHHHh
Q 006012 562 DDAIECLE 569 (664)
Q Consensus 562 ~~A~~~~~ 569 (664)
++|...++
T Consensus 272 ~~a~~~~r 279 (287)
T 3qou_A 272 DALASXYR 279 (287)
T ss_dssp CHHHHHHH
T ss_pred CcHHHHHH
Confidence 87776654
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.58 E-value=1.2e-06 Score=95.33 Aligned_cols=152 Identities=10% Similarity=-0.010 Sum_probs=72.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006012 314 GRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVL 393 (664)
Q Consensus 314 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 393 (664)
|++++|.+.|++..+... -+...+..+...+...|++++|.+.+++..+.... +...+..+...|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555666666666554322 24555666666666666666666666666554322 4555555666666666666666666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHC
Q 006012 394 KEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY---NCLHHAMAAFDRMLSE 469 (664)
Q Consensus 394 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 469 (664)
++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 6655443 2344455555555555555555555555554432 22344444555555555 5555555555555443
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.56 E-value=7.1e-07 Score=80.54 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012 439 DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEP-DTITWNTLIDCHFKCGRYDRAEELFEEM 501 (664)
Q Consensus 439 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 501 (664)
+...+..+...+...|++++|...|+++.+....+ +...+..+...|...|+.++|...|++.
T Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 107 NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 34444555555555555555555555555432211 1334455555555555555555555544
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.53 E-value=1.7e-05 Score=78.06 Aligned_cols=167 Identities=12% Similarity=0.035 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--
Q 006012 476 ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT------TTYNIMINLLGEQERWEDVKRLLGNMRAQGL---LPN-- 544 (664)
Q Consensus 476 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~p~-- 544 (664)
..+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|...+.+..+... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555677788899999999999888776422 22 2234455667788999999999999886421 122
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 006012 545 VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP--SNLALNSLINAFGEDQRDAEAFAVLQYMKEN-- 620 (664)
Q Consensus 545 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 620 (664)
..+++.+...|...|++++|+..++. |+++++. .+-.+ ...+|..+...|...|++++|+.++++.++.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~k----al~~~~~---~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQ----ILKQLEA---LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH----HHHHHHH---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH----HHHHHHh---cCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45889999999999999999998763 3333322 11111 1257889999999999999999999998762
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCCHhHH-HHHHH
Q 006012 621 --GLKP-DVVTYTTLMKALIRVDKFHKV-FSSYL 650 (664)
Q Consensus 621 --g~~p-~~~~~~~l~~a~~~~g~~~~A-~~~~~ 650 (664)
+... -..+|..++.+|.+.|++++| ...|+
T Consensus 228 ~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 1111 167889999999999999999 66666
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.51 E-value=4.3e-05 Score=75.08 Aligned_cols=167 Identities=9% Similarity=-0.033 Sum_probs=118.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 006012 446 MIDTFGKYNCLHHAMAAFDRMLSEGI-EPDT----ITWNTLIDCHFKCGRYDRAEELFEEMQERGYF-PC----TTTYNI 515 (664)
Q Consensus 446 li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~~ 515 (664)
.+..+...|++++|..+++...+... .++. ..+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888876421 1221 12334666667778899999999988874211 22 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC
Q 006012 516 MINLLGEQERWEDVKRLLGNMRAQ-----GLLP-NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP 589 (664)
Q Consensus 516 ll~~~~~~g~~~~a~~~~~~m~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p 589 (664)
+...|...|++++|...++++.+. +..+ ...++..+...|.+.|++++|++.++. |+++. ...+..+
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~----al~~~---~~~~~~~ 233 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK----AIEIS---CRINSMA 233 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----HHHHH---HHTTBCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHH---HHcCcHH
Confidence 888999999999999999888741 1111 234788899999999999999998763 33332 2233333
Q ss_pred C-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 006012 590 S-NLALNSLINAFGEDQ-RDAEAFAVLQYMKE 619 (664)
Q Consensus 590 ~-~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 619 (664)
. ...|..+..+|.+.| .+++|++.++++.+
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 3 568899999999999 46999999998874
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.48 E-value=1e-05 Score=75.15 Aligned_cols=129 Identities=16% Similarity=-0.016 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006012 267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV 346 (664)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 346 (664)
.+..+...+...|++++|++.|++.. .|+...|..+...+.+.|++++|.+.|++..+... .+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 34556677888999999999998774 56888999999999999999999999999887643 36788889999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006012 347 KMGYLKDAEFVVSEMERSGVLP---------------DEHTYSLLIDAYANAGRWESARIVLKEMEVSH 400 (664)
Q Consensus 347 ~~g~~~~a~~~~~~m~~~g~~~---------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 400 (664)
..|++++|.+.+++..+..... ....+..+...|.+.|++++|...|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999988753221 12678888889999999999999999988764
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.48 E-value=5.5e-05 Score=75.04 Aligned_cols=169 Identities=10% Similarity=0.010 Sum_probs=99.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHHH
Q 006012 279 GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG-RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM-G-YLKDAE 355 (664)
Q Consensus 279 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~-g-~~~~a~ 355 (664)
+..++|+++++.+...+ +-+..+|+.--..+...| .+++++++++.+.....+ +..+|+.-...+.+. + +.++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence 44456777777776653 334556676666666666 477777777777765443 566666665555555 5 667777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-------
Q 006012 356 FVVSEMERSGVLPDEHTYSLLIDAYANAGRWE--------SARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE------- 420 (664)
Q Consensus 356 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~------- 420 (664)
++++.+.+...+ |..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 777777765443 6666665555554444444 6666666666554 3455666666555555554
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006012 421 WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK 452 (664)
Q Consensus 421 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 452 (664)
++++++.++++.... +-|...|+-+-..+.+
T Consensus 224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKH 254 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 455555555555432 3344555444333333
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.45 E-value=2e-05 Score=77.48 Aligned_cols=161 Identities=12% Similarity=-0.012 Sum_probs=92.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 006012 271 VIVGFAKAGDASKAMRFLGMAQGVGL-SPKT----ATYAAVITALSNSGRTIEAEAVFEELKESGLK-PR----TKAYNA 340 (664)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~----~~~~~~ 340 (664)
.+..+...|++++|.+.+++..+... .++. ..+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667777888888888877765321 1221 12334555666667777777777777663221 12 235677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCC-HHHHH
Q 006012 341 LLKGYVKMGYLKDAEFVVSEMER----S-GVLP-DEHTYSLLIDAYANAGRWESARIVLKEMEVS----HAKPN-SFIYS 409 (664)
Q Consensus 341 li~~~~~~g~~~~a~~~~~~m~~----~-g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~~~-~~~~~ 409 (664)
+...|...|++++|...++++.+ . +..+ ...++..+...|.+.|++++|+..+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777777777777777777663 1 1111 1235566666677777777777666665432 11111 34555
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHH
Q 006012 410 RILAGYRDRG-EWQRTFQVLKEM 431 (664)
Q Consensus 410 ~ll~~~~~~g-~~~~a~~~~~~m 431 (664)
.+..+|.+.| .+++|.+.+++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHH
Confidence 5555566666 345555555554
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.43 E-value=9.9e-06 Score=71.58 Aligned_cols=129 Identities=14% Similarity=0.030 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006012 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGY 345 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 345 (664)
..+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|.+.|++..+... .+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 445666777778888888888888777653 34577777788888888888888888888776532 3566777777778
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHH
Q 006012 346 VKMGYLKDAEFVVSEMERSGVLPDEHTYSL--LIDAYANAGRWESARIVLKEME 397 (664)
Q Consensus 346 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~ 397 (664)
...|++++|...+++..+.... +...+.. ++..+.+.|++++|+..+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888777765332 4444433 3333666677777777766553
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.41 E-value=1.4e-05 Score=74.10 Aligned_cols=121 Identities=12% Similarity=0.179 Sum_probs=59.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006012 413 AGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYD 492 (664)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 492 (664)
..+...|++++|...|++.. .|+...+..+...|.+.|++++|...+++..+.. +.+...|..+..+|.+.|+++
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 34444444444444444432 3344444445555555555555555555544432 223445555555555555555
Q ss_pred HHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 493 RAEELFEEMQERGYFPC----------------TTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 493 ~A~~~~~~m~~~~~~p~----------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 539 (664)
+|++.|++..+.. +.+ ...+..+..++.+.|++++|.+.+++..+.
T Consensus 89 ~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 89 LAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555555432 111 144555555555666666666666655553
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.40 E-value=9.3e-06 Score=68.47 Aligned_cols=97 Identities=16% Similarity=0.035 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006012 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGY 345 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 345 (664)
..+......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.|++.++.+. .+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHH
Confidence 345555666666677777777766666543 33566666666666666666666666666665432 2455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 006012 346 VKMGYLKDAEFVVSEMERS 364 (664)
Q Consensus 346 ~~~g~~~~a~~~~~~m~~~ 364 (664)
...|++++|.+.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 6666666666666666654
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.39 E-value=0.00019 Score=71.12 Aligned_cols=223 Identities=9% Similarity=0.031 Sum_probs=155.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-CHH
Q 006012 311 SNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMG-YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANA-G-RWE 387 (664)
Q Consensus 311 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g-~~~ 387 (664)
.+.+..++|++++++++..+.. +..+|+.--..+...| .+++++++++.+.....+ +..+|+.-...+.+. + +.+
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 3345567899999999987544 6777888877888888 599999999999988765 788898888777776 7 889
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----
Q 006012 388 SARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ--------RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNC---- 455 (664)
Q Consensus 388 ~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---- 455 (664)
+++++++++.+.. +-|..+|+.....+.+.+.++ ++++.++++.+.. +-|...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 9999999998765 457778876666665555554 7888888877764 4577777777777777665
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHCC-----CC
Q 006012 456 ---LHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRY--------------------DRAEELFEEMQERG-----YF 507 (664)
Q Consensus 456 ---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~-----~~ 507 (664)
++++++.+++.+... +-|...|+-+-..+.+.|+. .+..+...++...+ -.
T Consensus 221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 677777777777654 45677777766666666653 22222222222211 13
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 508 PCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (664)
Q Consensus 508 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 538 (664)
++...+..++..|...|+.++|.++++.+.+
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 5566666777777777777777777777654
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.38 E-value=1.6e-05 Score=66.10 Aligned_cols=113 Identities=16% Similarity=0.122 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006012 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG 344 (664)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 344 (664)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...|+++.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 3455566666666677777777666665542 33455666666666666666666666666655432 245555666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 345 YVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAY 380 (664)
Q Consensus 345 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 380 (664)
+...|++++|...++++.+.... +...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 66666666666666665554321 334444443333
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.36 E-value=8.4e-05 Score=72.98 Aligned_cols=171 Identities=8% Similarity=-0.055 Sum_probs=118.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 006012 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDT-----ITWNTLIDCHFKCGRYDRAEELFEEMQERGY---FPC--TT 511 (664)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~ 511 (664)
.+...+..+...|++++|.+.+....+....... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444556667777777777777776654322111 2233455567778899999999988875321 122 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHC
Q 006012 512 TYNIMINLLGEQERWEDVKRLLGNMRAQ-GLLPN-----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTD 585 (664)
Q Consensus 512 t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~ 585 (664)
+|+.+...|...|++++|...+.++.+. ...|+ ..++..+...|.+.|++++|++.++. |+++.. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k----al~~~~---~~ 229 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK----AIEISC---RI 229 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----HHHHHH---HT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH----HHHHHH---hc
Confidence 7888899999999999999999988732 01122 25888999999999999999998764 333332 22
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 006012 586 GLKPS-NLALNSLINAFGEDQRDAEA-FAVLQYMKE 619 (664)
Q Consensus 586 g~~p~-~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 619 (664)
+.... ..+|..+..+|.+.|++++| ...+++...
T Consensus 230 ~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 22222 46789999999999999999 777887764
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.36 E-value=1.8e-05 Score=65.82 Aligned_cols=113 Identities=14% Similarity=0.164 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLL 520 (664)
Q Consensus 441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 520 (664)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...|.+.|++++|..+|+++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 444555555555566666666665555432 2345555666666666666666666666665543 34455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 521 GEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYG 556 (664)
Q Consensus 521 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 556 (664)
...|++++|...++++.+... .+...+..+...+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 666666666666666655432 13444444444433
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.34 E-value=2e-05 Score=69.53 Aligned_cols=62 Identities=10% Similarity=-0.080 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 476 ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (664)
Q Consensus 476 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 538 (664)
..+..+...|...|++++|.+.+++..+.. +.+...|..+...+...|++++|.+.++++.+
T Consensus 48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 48 IYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVK 109 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333333444444444444444444443332 22333344444444444444444444444443
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.33 E-value=1.3e-05 Score=78.35 Aligned_cols=190 Identities=7% Similarity=-0.037 Sum_probs=128.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 439 DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMIN 518 (664)
Q Consensus 439 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 518 (664)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56677888888999999999999999988764 3478888999999999999999999999998875 567788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012 519 LLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLI 598 (664)
Q Consensus 519 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 598 (664)
++...|++++|...+.+..+.+.. +...+...+....+. .++ ..+..........+......+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~------------~~~~~~~~~~~~~~~~i~~~l~ 144 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKK------------KRWNSIEERRIHQESELHSYLT 144 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHH------------HHHHHHHHTCCCCCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHH------------HHHHHHHHHHHhhhHHHHHHHH
Confidence 999999999999999988764211 000111111111111 000 0122233333444444444443
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhc-CCHhHHHHHHH
Q 006012 599 NAFGEDQRDAEAFAVLQYMKENGLKPDV-VTYTTLMKALIRV-DKFHKVFSSYL 650 (664)
Q Consensus 599 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~a~~~~-g~~~~A~~~~~ 650 (664)
..+ .|++++|++.+++..+ ..|+. .....+...+.+. +++++|.++|+
T Consensus 145 ~l~--~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~ 194 (281)
T 2c2l_A 145 RLI--AAERERELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFS 194 (281)
T ss_dssp HHH--HHHHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 332 6899999999888876 45654 3444444445454 66778888876
No 131
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.32 E-value=1.6e-05 Score=66.91 Aligned_cols=96 Identities=13% Similarity=0.102 Sum_probs=57.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG 521 (664)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 521 (664)
.+......|.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..|++.++.+ +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 34445555566666666666666655543 2345566666666666666666666666666554 445556666666666
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 006012 522 EQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 522 ~~g~~~~a~~~~~~m~~~ 539 (664)
..|++++|.+.|++.++.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 666666666666666654
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.31 E-value=8.9e-06 Score=74.73 Aligned_cols=160 Identities=13% Similarity=0.030 Sum_probs=94.7
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCH
Q 006012 452 KYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER----GY-FPCTTTYNIMINLLGEQERW 526 (664)
Q Consensus 452 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~t~~~ll~~~~~~g~~ 526 (664)
..|++++|.++++.+... .......+..+...|...|++++|...+++..+. +. ......+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644444321 1224556666667777777777777777766541 11 11234566666777777777
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 006012 527 EDVKRLLGNMRAQ----GLLP--NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLIN 599 (664)
Q Consensus 527 ~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~ 599 (664)
++|.+.+.+..+. +-.+ ....+..+...+...|++++|...++.. +.+.. ..+-.. -..++..+..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----l~~~~---~~~~~~~~~~~~~~la~ 155 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS----LVYAQ---QADDQVAIACAFRGLGD 155 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH----HHHHH---HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH----HHHHH---hccchHHHHHHHHHHHH
Confidence 7777777766553 1111 1345677777888888888888776532 22221 111111 1224677788
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 006012 600 AFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 600 ~~~~~g~~~~A~~~~~~m~~ 619 (664)
++...|++++|.+.+++..+
T Consensus 156 ~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 156 LAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHH
Confidence 88888888888888887765
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.30 E-value=1.4e-05 Score=67.38 Aligned_cols=119 Identities=12% Similarity=-0.063 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006012 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL 341 (664)
Q Consensus 262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 341 (664)
+.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.|++..+... .+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 3445566667777777777777777777776643 33566677777777777777777777777666432 255666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006012 342 LKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANA 383 (664)
Q Consensus 342 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 383 (664)
..++.+.|++++|.+.+++..+.... +...+..+...+.+.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHh
Confidence 66777777777777777766654321 334444455444443
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.30 E-value=1.8e-05 Score=66.46 Aligned_cols=118 Identities=16% Similarity=0.018 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006012 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG 344 (664)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 344 (664)
...+..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 4455666666777777777777777766543 33566666677777777777777777777665432 245566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006012 345 YVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGR 385 (664)
Q Consensus 345 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 385 (664)
+...|++++|...+++..+.... +...+..+...+.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 66777777777777666654322 45555555555555544
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.29 E-value=2.1e-05 Score=65.95 Aligned_cols=119 Identities=10% Similarity=-0.026 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012 440 THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINL 519 (664)
Q Consensus 440 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 519 (664)
...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445555556666666666666666665543 2345666666666777777777777777766654 3446666666777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006012 520 LGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRF 561 (664)
Q Consensus 520 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 561 (664)
+...|++++|.+.+++..+... .+...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 7777777777777777666532 2455666666666666553
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.26 E-value=3.4e-06 Score=82.54 Aligned_cols=97 Identities=14% Similarity=-0.047 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006012 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG 344 (664)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 344 (664)
...+..+...+.+.|++++|+..|+.+.+.. +.+...|..+..++.+.|++++|.+.+++..+... .+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3445555666666666666666666665542 22555666666666666666666666666655422 245555666666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 006012 345 YVKMGYLKDAEFVVSEMER 363 (664)
Q Consensus 345 ~~~~g~~~~a~~~~~~m~~ 363 (664)
+...|++++|...+++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665544
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.25 E-value=9.5e-06 Score=74.56 Aligned_cols=156 Identities=13% Similarity=0.000 Sum_probs=90.4
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCC
Q 006012 276 AKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES----GLK-PRTKAYNALLKGYVKMGY 350 (664)
Q Consensus 276 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~-p~~~~~~~li~~~~~~g~ 350 (664)
...|++++|.+.++.+.. .......++..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356778888775554443 11224567777777788888888888887776551 111 123556677777777788
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcC
Q 006012 351 LKDAEFVVSEMERS----GVLP--DEHTYSLLIDAYANAGRWESARIVLKEMEVSHA-KPN----SFIYSRILAGYRDRG 419 (664)
Q Consensus 351 ~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~~~----~~~~~~ll~~~~~~g 419 (664)
+++|...+++..+. +-.+ ...++..+...+...|++++|...+++...... ..+ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 87777777766542 1111 134466667777777777777777776643210 011 123445555666666
Q ss_pred CHHHHHHHHHHHH
Q 006012 420 EWQRTFQVLKEMK 432 (664)
Q Consensus 420 ~~~~a~~~~~~m~ 432 (664)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666665543
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.23 E-value=2.4e-05 Score=65.97 Aligned_cols=93 Identities=9% Similarity=0.133 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006012 409 SRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC 488 (664)
Q Consensus 409 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 488 (664)
..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|.+.
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 97 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAM 97 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHH
Confidence 333333333334444443333333321 1233333333444444444444444444433322 12333344444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 006012 489 GRYDRAEELFEEMQE 503 (664)
Q Consensus 489 g~~~~A~~~~~~m~~ 503 (664)
|++++|.+.|++..+
T Consensus 98 ~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 98 KDYTKAMDVYQKALD 112 (133)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 444444444444433
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.23 E-value=6.5e-06 Score=71.83 Aligned_cols=95 Identities=15% Similarity=-0.051 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 302 TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYA 381 (664)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 381 (664)
.+..+...+.+.|++++|.+.|++..+... -+...|..+..+|...|++++|...|++..+..+. +...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 444444455555555555555555544322 14444555555555555555555555555443322 3444445555555
Q ss_pred HcCCHHHHHHHHHHHHh
Q 006012 382 NAGRWESARIVLKEMEV 398 (664)
Q Consensus 382 ~~g~~~~A~~l~~~m~~ 398 (664)
+.|++++|...|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555444
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.21 E-value=3e-05 Score=77.91 Aligned_cols=131 Identities=8% Similarity=-0.083 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006012 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK--------------TATYAAVITALSNSGRTIEAEAVFEELKESG 330 (664)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 330 (664)
...+..+...|.+.|++++|++.|++..+...... ...|..+..++.+.|++++|+..|++.++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45667778888899999999999998887541111 4778888888888888888888888887754
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 006012 331 LKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESA-RIVLKEME 397 (664)
Q Consensus 331 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~l~~~m~ 397 (664)
. .+...|..+..+|...|++++|...|++..+.... +..++..+...+.+.|+.++| ..+++.|.
T Consensus 227 p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 S-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 36777778888888888888888888887775433 566777777777777777777 44555553
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.19 E-value=6.3e-05 Score=72.12 Aligned_cols=129 Identities=12% Similarity=-0.012 Sum_probs=72.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHh
Q 006012 374 SLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPD--THFYNVMIDTFG 451 (664)
Q Consensus 374 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~ 451 (664)
-.+...+...|++++|.++|+.+...+ |+......+...+.+.++|++|+..|+...... .|. ...+..+..++.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 345556666677777777776665432 333244445556666677777777666443321 110 234555666666
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006012 452 KYNCLHHAMAAFDRMLSEGIEPD--TITWNTLIDCHFKCGRYDRAEELFEEMQERG 505 (664)
Q Consensus 452 ~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (664)
..|++++|+..|++.......|. .........++.+.|+.++|..+|+++...+
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66667777666666653222132 2244455556666677777777777666653
No 142
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.19 E-value=1.9e-05 Score=68.80 Aligned_cols=103 Identities=9% Similarity=-0.045 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006012 264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLK 343 (664)
Q Consensus 264 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 343 (664)
+...+..+...+.+.|++++|++.|+++.... +.+...|..+..++.+.|++++|++.|++..+.... +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 45577788889999999999999999999865 457889999999999999999999999999986543 6788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006012 344 GYVKMGYLKDAEFVVSEMERSGVLPDE 370 (664)
Q Consensus 344 ~~~~~g~~~~a~~~~~~m~~~g~~~~~ 370 (664)
+|.+.|++++|...|++..+.. |+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~--~~~ 137 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS--NDE 137 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCH
Confidence 9999999999999999998863 454
No 143
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.18 E-value=0.0011 Score=65.49 Aligned_cols=137 Identities=7% Similarity=-0.038 Sum_probs=80.4
Q ss_pred HcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006012 277 KAGDAS-KAMRFLGMAQGVGLSPKTATYAAVITALSNSGR----------TIEAEAVFEELKESGLKPRTKAYNALLKGY 345 (664)
Q Consensus 277 ~~g~~~-~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 345 (664)
+.|.++ +|+++++.+...+ +-+...|+.--..+...++ +++++.+++.+.....+ +..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344443 6777777777654 3345556655444444333 45666666666665433 566666666666
Q ss_pred HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 006012 346 VKMG--YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGR-WESARIVLKEMEVSHAKPNSFIYSRILAGYRD 417 (664)
Q Consensus 346 ~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~ 417 (664)
.+.+ .++++..+++.+.+.... |..+|+.-.-.+...|. ++++++.++++.+.. +-|...|+.....+..
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 6666 366777777777665443 66666666666666666 466777777666654 3455555555444433
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.16 E-value=1.2e-05 Score=70.06 Aligned_cols=96 Identities=15% Similarity=-0.004 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 301 ATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAY 380 (664)
Q Consensus 301 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 380 (664)
..+..+...+.+.|++++|...|++...... .+...|..+..+|...|++++|...+++..+.... +...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 3444445555555555555555555544322 14444555555555555555555555555443221 344445555555
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 006012 381 ANAGRWESARIVLKEMEV 398 (664)
Q Consensus 381 ~~~g~~~~A~~l~~~m~~ 398 (664)
...|++++|...|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555443
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.16 E-value=4e-05 Score=76.96 Aligned_cols=95 Identities=13% Similarity=-0.036 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012 475 TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDI 554 (664)
Q Consensus 475 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 554 (664)
...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|...++++++.... +...+..+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 4677888888888888888888888888875 557788888888888888999998888888876432 57788888888
Q ss_pred HHhcCChHHHHH-HHhhh
Q 006012 555 YGQSGRFDDAIE-CLEGL 571 (664)
Q Consensus 555 ~~~~g~~~~A~~-~~~~~ 571 (664)
+.+.|+.++|.+ .+.++
T Consensus 274 ~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888743 44433
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.16 E-value=9.8e-06 Score=72.84 Aligned_cols=120 Identities=8% Similarity=0.091 Sum_probs=76.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCH--HH
Q 006012 417 DRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDC-HFKCGRY--DR 493 (664)
Q Consensus 417 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~--~~ 493 (664)
..|++++|...++...+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4455666666666655443 3455666666666777777777777777666543 2355566666666 6677776 77
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 494 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 539 (664)
|...|+++.+.. +.+...+..+...+...|++++|...+.++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777664 445666777777777777777777777777765
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.16 E-value=2.7e-05 Score=74.63 Aligned_cols=199 Identities=10% Similarity=0.006 Sum_probs=144.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHH------------cCCC-----
Q 006012 277 KAGDASKAMRFLGMAQGVGLSPKTATYAAV-------ITALSNSGRTIEAEAVFEELKE------------SGLK----- 332 (664)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~------------~~~~----- 332 (664)
..++...|.+.|.++.... +-....|..+ ...+.+.++..+++..+..-.. .|.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5789999999999998864 3457788888 5777777777777666665544 1210
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CHHH
Q 006012 333 ---PRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKP--NSFI 407 (664)
Q Consensus 333 ---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~--~~~~ 407 (664)
--....-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .| ....
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 012344556778889999999999999988754 444366677778899999999999998554321 11 1346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012 408 YSRILAGYRDRGEWQRTFQVLKEMKSSGVEPD--THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTL 481 (664)
Q Consensus 408 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 481 (664)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.... |+...+..|
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 77888999999999999999999875433253 3466677778899999999999999998764 444444443
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.15 E-value=1.7e-05 Score=71.29 Aligned_cols=120 Identities=10% Similarity=0.008 Sum_probs=83.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--H
Q 006012 486 FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDI-YGQSGRF--D 562 (664)
Q Consensus 486 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~ 562 (664)
...|++++|...+++..+.. +.+...|..+...+...|++++|...++++.+... .+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 34677778888887777665 45677777888888888888888888888777532 256677777777 7778887 7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 563 DAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYMKEN 620 (664)
Q Consensus 563 ~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 620 (664)
+|+..++ +.... .| +...|..+...|...|++++|+..++++.+.
T Consensus 99 ~A~~~~~-----------~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMID-----------KALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHH-----------HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHH-----------HHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777654 22221 23 4567778888888888888888888888873
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.12 E-value=5.7e-05 Score=63.33 Aligned_cols=97 Identities=12% Similarity=-0.027 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006012 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGY 345 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 345 (664)
..+..+...+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..|++..+... .+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 345556666777777777777777766643 34566677777777777777777777777766532 2456666677777
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 006012 346 VKMGYLKDAEFVVSEMERS 364 (664)
Q Consensus 346 ~~~g~~~~a~~~~~~m~~~ 364 (664)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777766653
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.10 E-value=0.00013 Score=59.76 Aligned_cols=97 Identities=12% Similarity=0.036 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006012 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGY 345 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 345 (664)
..+..+...+...|++++|.+.|+...... +.+...+..+...+.+.|++++|...+++..+... .+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 345556666667777777777777666543 33556666666666667777777777766665432 2455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 006012 346 VKMGYLKDAEFVVSEMERS 364 (664)
Q Consensus 346 ~~~g~~~~a~~~~~~m~~~ 364 (664)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666666654
No 151
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=0.00029 Score=73.29 Aligned_cols=117 Identities=9% Similarity=0.014 Sum_probs=56.4
Q ss_pred ccCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--C---CCCCHHHHHHHHHHHH
Q 006012 452 KYNCLHHAMAAFDRMLS----EGIEPD-TITWNTLIDCHFKCGRYDRAEELFEEMQER--G---YFPCTTTYNIMINLLG 521 (664)
Q Consensus 452 ~~g~~~~A~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~---~~p~~~t~~~ll~~~~ 521 (664)
..|+.+.|..++..... .+..+. ..++..+...|...|++++|..+++++... + -......+..+++.|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 34455555555544432 111111 334555555666666666666666555432 1 0111334555556666
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCChHHHHHHH
Q 006012 522 EQERWEDVKRLLGNMRAQ--GLLPN----VVTYTTLVDIYGQSGRFDDAIECL 568 (664)
Q Consensus 522 ~~g~~~~a~~~~~~m~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 568 (664)
..|++++|..++++.... .+..+ ...+..++..+...|++++|...+
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 666666666666555432 11111 233444455555666666665554
No 152
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.07 E-value=0.0024 Score=62.99 Aligned_cols=190 Identities=8% Similarity=-0.035 Sum_probs=124.0
Q ss_pred HhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012 311 SNSGRT-IEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY----------LKDAEFVVSEMERSGVLPDEHTYSLLIDA 379 (664)
Q Consensus 311 ~~~g~~-~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 379 (664)
.+.|.+ ++|+++++.++..+.. +..+|+.--..+...+. ++++..+++.+.....+ +..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 345554 4789999998876433 45556544444333332 57788888888876554 77888877777
Q ss_pred HHHcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---
Q 006012 380 YANAG--RWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE-WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY--- 453 (664)
Q Consensus 380 ~~~~g--~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--- 453 (664)
+.+.+ .+++++.+++.+.+.. +-|..+|+.-...+...|. ++++++.++.+.+.. +-|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 77777 4788888888888765 4577788777777777777 578888888887764 45666666655554443
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCC
Q 006012 454 -----------NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC-----------GRYDRAEELFEEMQERG 505 (664)
Q Consensus 454 -----------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~ 505 (664)
+.++++++.+....... +-|...|+-+--.+.+. +.++++++.++++.+..
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 34566666666666544 34566666444444433 34566666666666543
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.06 E-value=0.00017 Score=59.02 Aligned_cols=96 Identities=13% Similarity=0.051 Sum_probs=55.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG 521 (664)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 521 (664)
.+..+...+...|++++|...++...+.. +.+...+..+...|.+.|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44445555555566666666666555432 2345555566666666666666666666665553 334555666666666
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 006012 522 EQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 522 ~~g~~~~a~~~~~~m~~~ 539 (664)
..|++++|.+.+.+..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 666666666666666654
No 154
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.06 E-value=3e-05 Score=67.41 Aligned_cols=98 Identities=11% Similarity=-0.031 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012 440 THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINL 519 (664)
Q Consensus 440 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 519 (664)
...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..|++....+ +.+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3445555666666777777777777666543 3356666666677777777777777777776654 3455666666777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 006012 520 LGEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 520 ~~~~g~~~~a~~~~~~m~~~ 539 (664)
+...|++++|.+.+++.++.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776654
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.05 E-value=7.1e-05 Score=63.01 Aligned_cols=110 Identities=14% Similarity=0.088 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC
Q 006012 511 TTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS 590 (664)
Q Consensus 511 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~ 590 (664)
..+..+...+.+.|++++|++.|.+.++.... +...|..+..+|.+.|++++|++.++..++ +- ... .++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~----~~---~~~--~~~ 78 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVE----VG---RET--RAD 78 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HH---HHT--TCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH----hC---ccc--chh
Confidence 34556667777777777777777777765322 566777777778888888877776553222 11 111 111
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012 591 ----NLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTL 632 (664)
Q Consensus 591 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 632 (664)
..+|..+..++...|++++|++.|++.++ ..||..+...|
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 23677888999999999999999999988 56777665544
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.04 E-value=8.9e-05 Score=62.41 Aligned_cols=97 Identities=16% Similarity=0.033 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----HHHHH
Q 006012 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGL--KPR----TKAYN 339 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--~p~----~~~~~ 339 (664)
..+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.|++.++... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566777777777777777777777653 33566777777777777777777777777665311 111 13455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 340 ALLKGYVKMGYLKDAEFVVSEMER 363 (664)
Q Consensus 340 ~li~~~~~~g~~~~a~~~~~~m~~ 363 (664)
.+..++...|++++|.+.|++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555666666666666666666554
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.04 E-value=9.3e-06 Score=74.64 Aligned_cols=86 Identities=9% Similarity=-0.014 Sum_probs=35.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012 443 YNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE 522 (664)
Q Consensus 443 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 522 (664)
+..+..+|.+.|++++|+..++...+.. +.+...+..+..+|...|++++|++.|++..+.. +-+...+..+...+..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHH
Confidence 3333444444444444444444444332 2233444444444444455555555544444432 2233444444444444
Q ss_pred cCCHHHHH
Q 006012 523 QERWEDVK 530 (664)
Q Consensus 523 ~g~~~~a~ 530 (664)
.++.+++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 44443333
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.04 E-value=9.4e-05 Score=61.96 Aligned_cols=95 Identities=11% Similarity=0.024 Sum_probs=52.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG 521 (664)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 521 (664)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.+ +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444445555555555555555555433 2345555555566666666666666666655554 334555555666666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 006012 522 EQERWEDVKRLLGNMRA 538 (664)
Q Consensus 522 ~~g~~~~a~~~~~~m~~ 538 (664)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 66666666666665554
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.99 E-value=0.00012 Score=67.03 Aligned_cols=121 Identities=10% Similarity=-0.044 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006012 267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKT----------------ATYAAVITALSNSGRTIEAEAVFEELKESG 330 (664)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 330 (664)
.+..+...+.+.|++++|++.|++..+.. +.+. ..|..+..++.+.|++++|+..+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 44556666777777888877777776542 1111 455555566666666666666666655542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006012 331 LKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESAR 390 (664)
Q Consensus 331 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 390 (664)
. .+...+..+..+|...|++++|.+.|++..+.... +...+..+...+...++.+++.
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 2 24555555555666666666666666655544221 3444555555444444444433
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.96 E-value=0.00011 Score=63.12 Aligned_cols=95 Identities=11% Similarity=-0.016 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006012 267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV 346 (664)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 346 (664)
.+..+...+.+.|++++|++.|+.+...+ +.+...|..+..++.+.|++++|...|++..+.... +...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 34444555666666666666666665543 334555666666666666666666666666554322 4445555566666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 006012 347 KMGYLKDAEFVVSEMER 363 (664)
Q Consensus 347 ~~g~~~~a~~~~~~m~~ 363 (664)
..|++++|...|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665554
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.96 E-value=0.00016 Score=63.80 Aligned_cols=98 Identities=9% Similarity=-0.024 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012 440 THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINL 519 (664)
Q Consensus 440 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 519 (664)
...+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444455555555566666666665555443 2345556666666666666666666666666554 3345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 006012 520 LGEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 520 ~~~~g~~~~a~~~~~~m~~~ 539 (664)
+...|++++|.+.+++.++.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66666666666666666553
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.95 E-value=8.7e-05 Score=62.12 Aligned_cols=109 Identities=15% Similarity=0.123 Sum_probs=59.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 006012 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY--FPC----TTTYNI 515 (664)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~t~~~ 515 (664)
.+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+... .++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444555555556666666655555433 23455555566666666666666666666554320 111 455566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 516 MINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVD 553 (664)
Q Consensus 516 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 553 (664)
+...+...|++++|.+.+.++.+. .|+......+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 666666666666666666666653 234444444433
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.95 E-value=0.0002 Score=60.71 Aligned_cols=98 Identities=14% Similarity=-0.039 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006012 264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLK 343 (664)
Q Consensus 264 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 343 (664)
+...+..+...+...|++++|+..|+...... +.+...|..+..++...|++++|...|++..+.... +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 44555555566666666666666666555433 234555555555666666666666666555554321 4455555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 006012 344 GYVKMGYLKDAEFVVSEMER 363 (664)
Q Consensus 344 ~~~~~g~~~~a~~~~~~m~~ 363 (664)
++...|++++|...+++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555443
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.94 E-value=0.00017 Score=63.68 Aligned_cols=99 Identities=18% Similarity=0.075 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006012 264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLK 343 (664)
Q Consensus 264 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 343 (664)
+...+..+...|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..|++.++.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45566777777888888888888888877654 346777788888888888888888888887775432 5677777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 006012 344 GYVKMGYLKDAEFVVSEMERS 364 (664)
Q Consensus 344 ~~~~~g~~~~a~~~~~~m~~~ 364 (664)
+|...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888877654
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.94 E-value=9.9e-05 Score=61.76 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----HHHHH
Q 006012 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGL--KPR----TKAYN 339 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--~p~----~~~~~ 339 (664)
..+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...+++..+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666667777777777777777776643 34566677777777777777777777777665321 112 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 340 ALLKGYVKMGYLKDAEFVVSEMERS 364 (664)
Q Consensus 340 ~li~~~~~~g~~~~a~~~~~~m~~~ 364 (664)
.+...+...|++++|.+.++...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666666666666666666666654
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.93 E-value=0.00049 Score=58.26 Aligned_cols=94 Identities=13% Similarity=-0.015 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVD 553 (664)
Q Consensus 474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 553 (664)
+...|..+...+.+.|++++|...|++..... +.+...|..+...+...|++++|...+++..+.+.. +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 45555666666666666666666666665554 334556666666666666666666666666654322 4556666666
Q ss_pred HHHhcCChHHHHHHHh
Q 006012 554 IYGQSGRFDDAIECLE 569 (664)
Q Consensus 554 ~~~~~g~~~~A~~~~~ 569 (664)
+|...|++++|+..++
T Consensus 86 ~~~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 86 CQLEMESYDEAIANLQ 101 (137)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHH
Confidence 6666666666666544
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.00083 Score=69.76 Aligned_cols=161 Identities=11% Similarity=0.088 Sum_probs=76.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC
Q 006012 307 ITALSNSGRTIEAEAVFEELKESGLKPR----------------TKAYNALLKGYVKMGYLKDAEFVVSEMERSG-VLPD 369 (664)
Q Consensus 307 i~~~~~~g~~~~A~~l~~~m~~~~~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~ 369 (664)
...+.+.|++++|++.|..+.+...... ...+..+...|.+.|++++|.+.+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556777888888888877776432211 0234556666666666666666666554310 0111
Q ss_pred HH----HHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 006012 370 EH----TYSLLIDAYANAGRWESARIVLKEMEV----SHAKP-NSFIYSRILAGYRDRGEWQRTFQVLKEMKSS--GV-- 436 (664)
Q Consensus 370 ~~----~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~-- 436 (664)
.. +.+.+-..+...|+.++|..++++... .+..+ -..++..+...|...|++++|..++.++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 112222222334555555555555432 11111 1234444555555555555555555544321 10
Q ss_pred CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 006012 437 EP-DTHFYNVMIDTFGKYNCLHHAMAAFDRML 467 (664)
Q Consensus 437 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 467 (664)
.+ ...++..++..|...|++++|..+++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 01 12344444445555555555555554443
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.92 E-value=0.0001 Score=59.66 Aligned_cols=96 Identities=7% Similarity=0.034 Sum_probs=53.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 006012 442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP--CTTTYNIMINL 519 (664)
Q Consensus 442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~ 519 (664)
.+..+...+.+.|++++|...+++..+.. +.+...|..+...|...|++++|.+.|++..+.. +. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34444455555555555555555555432 2344555555566666666666666666665543 22 45555666666
Q ss_pred HHhc-CCHHHHHHHHHHHHHC
Q 006012 520 LGEQ-ERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 520 ~~~~-g~~~~a~~~~~~m~~~ 539 (664)
+... |++++|.+.+.+....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 6666 6666666666666554
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=0.00041 Score=59.46 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012 439 DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD----TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYN 514 (664)
Q Consensus 439 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 514 (664)
+...+..+...+...|++++|...|++..+.. |+ ...|..+..+|.+.|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 34445555555555555555555555555432 33 3455555556666666666666666655543 33455555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 515 IMINLLGEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 515 ~ll~~~~~~g~~~~a~~~~~~m~~~ 539 (664)
.+..++...|++++|.+.+++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5666666666666666666666553
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=0.00045 Score=59.21 Aligned_cols=99 Identities=9% Similarity=-0.012 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012 404 NSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPD----THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWN 479 (664)
Q Consensus 404 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 479 (664)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3444555555555555555555555555543 233 4555555666666666666666666665542 23455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006012 480 TLIDCHFKCGRYDRAEELFEEMQERG 505 (664)
Q Consensus 480 ~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (664)
.+..+|...|++++|...|++..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 66666777777777777777766653
No 171
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.90 E-value=0.00019 Score=61.70 Aligned_cols=98 Identities=11% Similarity=-0.014 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012 300 TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDA 379 (664)
Q Consensus 300 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 379 (664)
...+..+...+.+.|++++|...|++...... .+...|..+..++...|++++|...++...+.... +...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 44566666777777888888888877776533 26667777777777778888888777777765433 55666777777
Q ss_pred HHHcCCHHHHHHHHHHHHhc
Q 006012 380 YANAGRWESARIVLKEMEVS 399 (664)
Q Consensus 380 ~~~~g~~~~A~~l~~~m~~~ 399 (664)
|...|++++|...|++....
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776543
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.89 E-value=0.00011 Score=59.62 Aligned_cols=97 Identities=14% Similarity=0.057 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 006012 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP--RTKAYNALLK 343 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p--~~~~~~~li~ 343 (664)
..+..+...+...|++++|...|+++.+.. +.+...|..+...+.+.|++++|.+.|++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344445555556666666666666555432 2344555555555566666666666665555432 11 3445555555
Q ss_pred HHHhc-CCHHHHHHHHHHHHHC
Q 006012 344 GYVKM-GYLKDAEFVVSEMERS 364 (664)
Q Consensus 344 ~~~~~-g~~~~a~~~~~~m~~~ 364 (664)
++.+. |++++|.+.++...+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 55555 5555555555555543
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.84 E-value=0.00014 Score=63.38 Aligned_cols=136 Identities=15% Similarity=0.064 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 006012 477 TWNTLIDCHFKCGRYDRAEELFEEMQERGY-FPC----TTTYNIMINLLGEQERWEDVKRLLGNMRAQGL-LPN----VV 546 (664)
Q Consensus 477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~ 546 (664)
++..+...|...|++++|...+++..+... .++ ...+..+...+...|++++|.+.+++..+... ..+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455566666677777777777766654310 011 13566667777777888888777777664310 011 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 547 TYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 547 ~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
++..+...+...|++++|.+.++... +.... .+..+ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~----~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL----AIAQE---LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH----HHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHH---ccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 67777888888999998888765332 22221 11111 123567788888888999999888888765
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.84 E-value=0.00016 Score=60.16 Aligned_cols=94 Identities=9% Similarity=-0.059 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006012 269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM 348 (664)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 348 (664)
..+...+.+.|++++|+..|+.+.+.. +.+...|..+..++.+.|++++|+..|++..+.... +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 344555667777777777777776643 335666777777777777777777777776665322 455666666677777
Q ss_pred CCHHHHHHHHHHHHHC
Q 006012 349 GYLKDAEFVVSEMERS 364 (664)
Q Consensus 349 g~~~~a~~~~~~m~~~ 364 (664)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777766653
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.82 E-value=0.00014 Score=76.82 Aligned_cols=118 Identities=13% Similarity=0.072 Sum_probs=60.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 006012 379 AYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHH 458 (664)
Q Consensus 379 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 458 (664)
.+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3445566666666666665543 2345555666666666666666666666655543 3344555555555556666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 006012 459 AMAAFDRMLSEGIEPDTITWNTLIDC--HFKCGRYDRAEELFE 499 (664)
Q Consensus 459 A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 499 (664)
|.+.+++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666665555432 1122233333333 555555555555555
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.79 E-value=0.00017 Score=62.87 Aligned_cols=132 Identities=11% Similarity=-0.021 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----H
Q 006012 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLS-PK----TATYAAVITALSNSGRTIEAEAVFEELKESGLK-PR----T 335 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~----~ 335 (664)
.++..+...|...|++++|++.+++..+.... ++ ..++..+...+...|++++|.+.+++..+.... .+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45667777788888888888888776542100 11 135666777777777777777777766542100 11 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 336 KAYNALLKGYVKMGYLKDAEFVVSEMERS----GVL-PDEHTYSLLIDAYANAGRWESARIVLKEME 397 (664)
Q Consensus 336 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 397 (664)
..+..+...+...|++++|.+.+++..+. +.. ....++..+...|...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34555666666666666666666655431 100 012334445555555555555555555443
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.77 E-value=0.00026 Score=58.89 Aligned_cols=95 Identities=15% Similarity=-0.008 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006012 303 YAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN 382 (664)
Q Consensus 303 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 382 (664)
+..+...+.+.|++++|...|++..+... .+...|..+..++...|++++|...+++..+.... +...+..+...|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 44556677777888888888877776533 26677777777777778888888877777765433 56677777777777
Q ss_pred cCCHHHHHHHHHHHHhc
Q 006012 383 AGRWESARIVLKEMEVS 399 (664)
Q Consensus 383 ~g~~~~A~~l~~~m~~~ 399 (664)
.|++++|+..+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777653
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.69 E-value=0.0015 Score=54.50 Aligned_cols=92 Identities=13% Similarity=-0.004 Sum_probs=61.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 006012 271 VIVGFAKAGDASKAMRFLGMAQGVGLSPKT---ATYAAVITALSNSGRTIEAEAVFEELKESGLKPR---TKAYNALLKG 344 (664)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~ 344 (664)
+...+...|++++|.+.|+.+.+.. +.+. ..+..+..++.+.|++++|...|++..+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 4456667788888888887776643 2222 46666777777777777777777777765322 2 4556667777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 006012 345 YVKMGYLKDAEFVVSEMERS 364 (664)
Q Consensus 345 ~~~~g~~~~a~~~~~~m~~~ 364 (664)
+...|++++|...++.+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777664
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.65 E-value=0.00064 Score=71.34 Aligned_cols=123 Identities=8% Similarity=-0.024 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006012 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK---------------TATYAAVITALSNSGRTIEAEAVFEELKES 329 (664)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 329 (664)
...+..+...|.+.|++++|+..|+++.+.. +.+ ...|..+..++.+.|++++|+..|++.++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4456677788888889999998888877642 112 356666666666666666666666666654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006012 330 GLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESAR 390 (664)
Q Consensus 330 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 390 (664)
.. .+...|..+..+|...|++++|...|++..+.... +...+..+...+.+.++.+++.
T Consensus 347 ~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 32 25566666666666666666666666666654322 3445555555565555555544
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.64 E-value=0.00051 Score=72.12 Aligned_cols=139 Identities=9% Similarity=-0.056 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012 405 SFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDC 484 (664)
Q Consensus 405 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 484 (664)
...|..+...+.+.|++++|...|++..+.. |+... . .-+... +.. ......|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~----------~-~~~~~~----~~~----~~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYG----------L-SEKESK----ASE----SFLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCS----------C-CHHHHH----HHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--ccccc----------C-ChHHHH----HHH----HHHHHHHHHHHHH
Confidence 4566677777777777877777777766531 11000 0 000000 000 0114567777888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 006012 485 HFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDA 564 (664)
Q Consensus 485 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 564 (664)
|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++++.... +...+..+..++.+.|+.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888775 556778888888888888888888888888875322 456777777788888777776
Q ss_pred HH
Q 006012 565 IE 566 (664)
Q Consensus 565 ~~ 566 (664)
.+
T Consensus 405 ~~ 406 (457)
T 1kt0_A 405 DR 406 (457)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.63 E-value=0.00017 Score=76.17 Aligned_cols=115 Identities=10% Similarity=-0.037 Sum_probs=51.6
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012 451 GKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVK 530 (664)
Q Consensus 451 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 530 (664)
.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34444555555555444432 2234445555555555555555555555555443 334445555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHH
Q 006012 531 RLLGNMRAQGLLPNVVTYTTLVDI--YGQSGRFDDAIECL 568 (664)
Q Consensus 531 ~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~ 568 (664)
+.+++..+.... +...+..+..+ +.+.|++++|++.+
T Consensus 95 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~ 133 (477)
T 1wao_1 95 RDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGD 133 (477)
T ss_dssp HHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 555555443211 12222223222 44455555555443
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.62 E-value=0.00057 Score=69.43 Aligned_cols=96 Identities=14% Similarity=-0.018 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------------C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006012 267 LLNDVIVGFAKAGDASKAMRFLGMAQGVG--------------L-SPKTATYAAVITALSNSGRTIEAEAVFEELKESGL 331 (664)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g--------------~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 331 (664)
.+..+...+.+.|++++|++.|+++.+.- . +.+...|..+..++.+.|++++|++.+++.++...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 46667788889999999999998877510 0 11233444444444444444444444444443321
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 332 KPRTKAYNALLKGYVKMGYLKDAEFVVSEMER 363 (664)
Q Consensus 332 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 363 (664)
.+...|..+..+|...|++++|.+.+++..+
T Consensus 305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 305 -SNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1334444444444444444444444444443
No 183
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.60 E-value=0.0012 Score=57.08 Aligned_cols=100 Identities=14% Similarity=0.054 Sum_probs=69.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC------CC-----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHH
Q 006012 514 NIMINLLGEQERWEDVKRLLGNMRAQGLL------PN-----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVM 582 (664)
Q Consensus 514 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~------p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m 582 (664)
......+.+.|++++|.+.|++.++.... .+ ...|..+..++.+.|++++|+..++ +|+++|++-
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~----kAL~l~n~~ 90 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD----KALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHH----HHHHhhhcc
Confidence 33344445555555555555555543211 02 2388888999999999999998765 555555554
Q ss_pred HHCCCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 583 RTDGLKPSNL-AL----NSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 583 ~~~g~~p~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
.. +.|+.. .| .....++...|++++|+..|++.++
T Consensus 91 ~e--~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GE--LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CC--TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cc--CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 43 567654 78 8999999999999999999999986
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.58 E-value=0.0021 Score=53.52 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=23.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006012 445 VMIDTFGKYNCLHHAMAAFDRMLSEGIEPD---TITWNTLIDCHFKCGRYDRAEELFEEMQE 503 (664)
Q Consensus 445 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 503 (664)
.+...+.+.|++++|...|+...+... .+ ...+..+..+|.+.|++++|...|+++.+
T Consensus 44 ~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 44 WLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444433221 11 23334444444444444444444444444
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.57 E-value=0.00015 Score=59.94 Aligned_cols=86 Identities=13% Similarity=0.066 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012 278 AGDASKAMRFLGMAQGVG--LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAE 355 (664)
Q Consensus 278 ~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 355 (664)
.|++++|+..|++..+.+ -+.+...|..+...+.+.|++++|++.|++..+.... +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 456666677776666543 1223455666666667777777777777766665332 4556666666666677777777
Q ss_pred HHHHHHHHC
Q 006012 356 FVVSEMERS 364 (664)
Q Consensus 356 ~~~~~m~~~ 364 (664)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666553
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.57 E-value=0.00061 Score=69.16 Aligned_cols=140 Identities=9% Similarity=-0.028 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012 405 SFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDC 484 (664)
Q Consensus 405 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 484 (664)
...+..+...+.+.|++++|+..|++..+.- +.. ......+.+.. .. +.+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~-------~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK-------LQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG-------GH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH-------HH-HHHHHHHHHHHHH
Confidence 4557777778888888888888887766420 000 00001111110 00 1235667778888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 006012 485 HFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDA 564 (664)
Q Consensus 485 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 564 (664)
|.+.|++++|++.+++.++.. +.+...|..+..+|...|++++|.+.+++..+.... +...+..+..++.+.++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888765 456778888888888888888888888888875322 566777777777777766665
Q ss_pred HH
Q 006012 565 IE 566 (664)
Q Consensus 565 ~~ 566 (664)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.52 E-value=0.00015 Score=59.80 Aligned_cols=86 Identities=15% Similarity=0.112 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012 453 YNCLHHAMAAFDRMLSEG--IEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVK 530 (664)
Q Consensus 453 ~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 530 (664)
.|++++|+..|++.++.+ -+.+...+..+..+|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355566666666666542 11234456666666667777777777777766654 344666666666677777777777
Q ss_pred HHHHHHHHC
Q 006012 531 RLLGNMRAQ 539 (664)
Q Consensus 531 ~~~~~m~~~ 539 (664)
..+.+....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777666654
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.52 E-value=0.001 Score=58.44 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 539 (664)
+...|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..++...|++++|...+.+.++.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34567778888888888888888888888775 556778888888888888888888888888875
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.52 E-value=0.00036 Score=73.28 Aligned_cols=130 Identities=12% Similarity=0.019 Sum_probs=90.7
Q ss_pred HHHcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CC-HHHHHH
Q 006012 485 HFKCGRYDRAEELFEEMQER---GYFP----CTTTYNIMINLLGEQERWEDVKRLLGNMRAQ-----GLL-PN-VVTYTT 550 (664)
Q Consensus 485 ~~~~g~~~~A~~~~~~m~~~---~~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~~-p~-~~~~~~ 550 (664)
+...|++++|+.++++.++. -+.| ...+++.|..+|...|++++|..++.+.++- |.. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44577888888887776542 1122 2456777888888888888888888776542 221 22 467788
Q ss_pred HHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 551 LVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 551 li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
|...|...|++++|+.+++ +|++++........ |+ ..+.+.+..++...|.+++|..+++++++
T Consensus 399 La~~~~~~G~~~eA~~~~~----~Al~i~~~~lG~~H-p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMIC----KAYAILLVTHGPSH-PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHH----HHHHHHHHHTCTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH----HHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998765 56666655443221 22 23566777888889999999999999986
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.50 E-value=0.0013 Score=57.59 Aligned_cols=99 Identities=19% Similarity=0.048 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CC----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006012 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGV-------GL----------SPKTATYAAVITALSNSGRTIEAEAVFEELK 327 (664)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------g~----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 327 (664)
...+......+.+.|++++|++.|+..... +- +.+...|..+..++.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666777888899999999998887653 00 1122345555555555666666666655555
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 328 ESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERS 364 (664)
Q Consensus 328 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 364 (664)
+... .+...|..+..+|...|++++|...|+...+.
T Consensus 91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 5422 24455555555555555555555555555543
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.46 E-value=0.0061 Score=65.48 Aligned_cols=133 Identities=6% Similarity=-0.067 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-
Q 006012 281 ASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR----------TIEAEAVFEELKESGLKPRTKAYNALLKGYVKMG- 349 (664)
Q Consensus 281 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g- 349 (664)
.++|++.++.+.... +.+...|+.--.++.+.|+ ++++++.++.+.+...+ +..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 356677777777653 3345667666666666665 67777777777765443 5666666666666666
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 006012 350 -YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAG-RWESARIVLKEMEVSHAKPNSFIYSRILAGYRD 417 (664)
Q Consensus 350 -~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~ 417 (664)
+++++.+.++++.+.... |..+|+.....+.+.| .++++++.++++.+.. +-|...|+.....+.+
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHh
Confidence 557777777777765543 6666766666666666 6667777766666554 3455556555554443
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.45 E-value=0.001 Score=69.85 Aligned_cols=130 Identities=8% Similarity=0.031 Sum_probs=96.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH
Q 006012 519 LLGEQERWEDVKRLLGNMRAQ---GLLPN----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN 591 (664)
Q Consensus 519 ~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~ 591 (664)
.+...|++++|+.++++..+. -+-|+ ..+++.|..+|...|++++|..+++ ++++++.+..... .|+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~----~aL~i~~~~lG~~-Hp~~ 392 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYAR----RMVDGYMKLYHHN-NAQL 392 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHHSCTT-CHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH----HHHHHHHHHcCCC-CHHH
Confidence 456789999999999888753 12222 4688999999999999999998865 5555555544322 2333
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006012 592 -LALNSLINAFGEDQRDAEAFAVLQYMKE-----NGL-KPD-VVTYTTLMKALIRVDKFHKVFSSYLFFN 653 (664)
Q Consensus 592 -~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~-~~~~~~l~~a~~~~g~~~~A~~~~~~~~ 653 (664)
.+++.|...|...|++++|+.++++..+ .|- .|+ ..+...+..++...+++++|+..|....
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999998874 232 122 3455677778888999999999998653
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.44 E-value=0.0078 Score=64.69 Aligned_cols=171 Identities=9% Similarity=0.001 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--
Q 006012 352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGR----------WESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG-- 419 (664)
Q Consensus 352 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g-- 419 (664)
++|.+.++.+.+.+.. +..+|+.--..+.+.|+ ++++++.++.+.+.. +-+..+|+.-...+.+.+
T Consensus 46 eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 3445555555444322 34444444444444443 555555555555443 234455555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------
Q 006012 420 EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYN-CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC---------- 488 (664)
Q Consensus 420 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---------- 488 (664)
+++++++.++++.+.. +-+..+|+.-...+.+.| .++++.+.++++++.. .-+...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence 4455555555555543 334555555555555555 5566666666665544 23555565555555442
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006012 489 ----GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWE 527 (664)
Q Consensus 489 ----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 527 (664)
+.++++++.+++.+... +-+...|+.+-..+.+.++.+
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 45688888888888765 556778887777777766633
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.42 E-value=0.00052 Score=59.17 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=83.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 006012 521 GEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLIN 599 (664)
Q Consensus 521 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~ 599 (664)
.+.+.+++|.+.+++.++.+.. +...|..+..++...|+++.+...+ ++.++|+..|++..+ +.|+ ...|..+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al-~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAK-QMIQEAITKFEEALL--IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhH-hHHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence 4556678888888888876533 7788888888888888776555544 356777888888887 4564 568999999
Q ss_pred HHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 600 AFGEDQ-----------RDAEAFAVLQYMKENGLKPDVVTYTTLMKAL 636 (664)
Q Consensus 600 ~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~ 636 (664)
+|...| ++++|++.|+++++ +.|+...|...+...
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 998875 89999999999999 788877776555543
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.36 E-value=0.00048 Score=69.05 Aligned_cols=147 Identities=13% Similarity=0.025 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006012 266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGY 345 (664)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 345 (664)
..+..+...+.+.|++++|+..|++.... .|+... +...++..++...+ . ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHH
Confidence 34556677778889999999999887764 243321 11122222222111 0 12455555566
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHHHH
Q 006012 346 VKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAG-YRDRGEWQRT 424 (664)
Q Consensus 346 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~-~~~~g~~~~a 424 (664)
.+.|++++|...+++..+... .+...|..+..+|...|++++|...|++..+.. +.+...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666555432 245555566666666666666666666554332 1122333333333 1223445555
Q ss_pred HHHHHHHHH
Q 006012 425 FQVLKEMKS 433 (664)
Q Consensus 425 ~~~~~~m~~ 433 (664)
...|..|..
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 555555544
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.33 E-value=0.0031 Score=54.47 Aligned_cols=61 Identities=11% Similarity=0.034 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHHHH----HHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 337 AYNALLKGYVKMGYLKDAEFVVSEMERS-----GVLP-DEHTY----SLLIDAYANAGRWESARIVLKEME 397 (664)
Q Consensus 337 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~-~~~~~----~~li~~~~~~g~~~~A~~l~~~m~ 397 (664)
.|+.+..++.+.|++++|+..+++.++. .+.| +...| .....++...|++++|+..|++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555555555555555555555554442 0122 23344 555555555555555555555543
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.30 E-value=0.0083 Score=50.93 Aligned_cols=111 Identities=12% Similarity=-0.057 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 006012 279 GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK----MGYLKDA 354 (664)
Q Consensus 279 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a 354 (664)
+++++|++.|++..+.| .+... +...|...+.+++|.+.|++..+.| +...+..|...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45667777777777665 33332 5555555666666777777766653 45666666666666 5677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q 006012 355 EFVVSEMERSGVLPDEHTYSLLIDAYAN----AGRWESARIVLKEMEVSH 400 (664)
Q Consensus 355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~ 400 (664)
.+.|++..+.| +...+..|...|.. .++.++|...|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777766654 55666666666666 666666666666665544
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.29 E-value=0.00057 Score=68.51 Aligned_cols=150 Identities=13% Similarity=0.086 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 369 DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMID 448 (664)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 448 (664)
....+..+...+.+.|++++|...|++..... |+... +...++.+++...+. ..+|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 35667777888888899999999888877642 33221 222333333332221 135677777
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHH
Q 006012 449 TFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINL-LGEQERWE 527 (664)
Q Consensus 449 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~g~~~ 527 (664)
+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888877654 3466777788888888888888888888876653 2233444444433 23345566
Q ss_pred HHHHHHHHHHHC
Q 006012 528 DVKRLLGNMRAQ 539 (664)
Q Consensus 528 ~a~~~~~~m~~~ 539 (664)
++..++.+|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 677777777654
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.29 E-value=0.011 Score=50.15 Aligned_cols=110 Identities=6% Similarity=-0.102 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 006012 420 EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK----CGRYDRAE 495 (664)
Q Consensus 420 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 495 (664)
++++|++.|++..+.| .+... +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4555555555555554 22222 4444555555566666666666543 45555556666655 56666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 006012 496 ELFEEMQERGYFPCTTTYNIMINLLGE----QERWEDVKRLLGNMRAQG 540 (664)
Q Consensus 496 ~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~ 540 (664)
+.|++..+.| +...+..|...|.. .++.++|.+.+++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666654 35555556666655 566666666666666654
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00057 Score=55.27 Aligned_cols=91 Identities=11% Similarity=0.007 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HH
Q 006012 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN-------VV 546 (664)
Q Consensus 474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-------~~ 546 (664)
+...|..+...+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|.+.+++.++.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 34556667777778888888888888877765 4567777777888888888888888888887653 33 45
Q ss_pred HHHHHHHHHHhcCChHHHHHH
Q 006012 547 TYTTLVDIYGQSGRFDDAIEC 567 (664)
Q Consensus 547 ~~~~li~~~~~~g~~~~A~~~ 567 (664)
.+..+..++...|+++.|++.
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhH
Confidence 556666666666666655443
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.11 E-value=0.0053 Score=47.17 Aligned_cols=81 Identities=16% Similarity=0.180 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012 475 TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDI 554 (664)
Q Consensus 475 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 554 (664)
...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+++..+... -+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3445556666666666666666666666554 33455666666666667777777777766665432 144555555555
Q ss_pred HHh
Q 006012 555 YGQ 557 (664)
Q Consensus 555 ~~~ 557 (664)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.08 E-value=0.0059 Score=46.89 Aligned_cols=80 Identities=15% Similarity=0.134 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006012 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG 344 (664)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 344 (664)
...+..+...+...|++++|++.|++..+.. +.+...+..+...+.+.|++++|.+.|++..+... .+...+..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3455556666666667777766666665543 23455566666666666666666666666655422 134444444444
Q ss_pred HH
Q 006012 345 YV 346 (664)
Q Consensus 345 ~~ 346 (664)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0005 Score=55.58 Aligned_cols=64 Identities=13% Similarity=0.009 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006012 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES 329 (664)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 329 (664)
...+..+...+...|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.|++..+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3455566666677777777777777666543 335666666777777777777777777776654
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.00 E-value=0.0054 Score=49.93 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=48.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 459 AMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (664)
Q Consensus 459 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 538 (664)
|...|++..+.. +.+...+..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555443 2345566666666666777777777776666654 34456666666666777777777776666654
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.93 E-value=0.0075 Score=49.05 Aligned_cols=76 Identities=11% Similarity=-0.087 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 285 MRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEME 362 (664)
Q Consensus 285 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 362 (664)
++.|+.+.+.. +.+...+..+...+.+.|++++|...|++..+... .+...|..+..++...|++++|...|++..
T Consensus 5 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 5 TERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444332 22344445555555555555555555555444321 134444455555555555555555555444
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.82 E-value=0.0051 Score=48.75 Aligned_cols=64 Identities=27% Similarity=0.250 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA 538 (664)
Q Consensus 474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 538 (664)
+...+..+...|.+.|++++|++.|++.++.+ +.+...|..+..+|...|++++|.+.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45556666666666666666666666666654 33455666666666666666666666666554
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.81 E-value=0.0034 Score=54.05 Aligned_cols=92 Identities=9% Similarity=0.005 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012 454 NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR----------YDRAEELFEEMQERGYFPCTTTYNIMINLLGEQ 523 (664)
Q Consensus 454 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 523 (664)
+.+++|.+.++...+.. +.+...|+.+..++...++ +++|+..|++.++.+ +.+...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 44566666666665543 3355566656556665554 357777777777765 44666777777777765
Q ss_pred C-----------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012 524 E-----------RWEDVKRLLGNMRAQGLLPNVVTYT 549 (664)
Q Consensus 524 g-----------~~~~a~~~~~~m~~~~~~p~~~~~~ 549 (664)
| ++++|.+.|++.++. .|+...|.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~ 128 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 128 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence 4 788888888888874 56554443
No 208
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.79 E-value=0.091 Score=59.24 Aligned_cols=126 Identities=13% Similarity=0.182 Sum_probs=74.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006012 409 SRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC 488 (664)
Q Consensus 409 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 488 (664)
..++..+.+.|.++.|.++.+.-. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 445555566666666665442110 1123345567777777765432 4567788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006012 489 GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIEC 567 (664)
Q Consensus 489 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 567 (664)
|+++.|.+.|.++.+ |..+...+...|+.+...++.+.....|- ++....+|.+.|++++|+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~ 758 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDL 758 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHH
Confidence 888888888877643 33444455556666666665555554431 23344455666666666655
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.77 E-value=0.0064 Score=48.17 Aligned_cols=66 Identities=17% Similarity=0.070 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006012 262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKE 328 (664)
Q Consensus 262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 328 (664)
+.+...+..+...|.+.|++++|++.|+++.+.. +.+...|..+..+|.+.|++++|.+.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3456677777888888888888888888877754 33566788888888888888888888877664
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.74 E-value=0.1 Score=51.67 Aligned_cols=58 Identities=16% Similarity=0.069 Sum_probs=35.2
Q ss_pred HHHHHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHH--HcC---CHHHHHHHHHHHHHcCCCCC
Q 006012 168 ILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACA--RND---DLEKALNLMSKMRQDGYHCD 227 (664)
Q Consensus 168 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~ 227 (664)
.++.++.-.-.-.++.......+.++.+|...+++.. ..+ ...+|+.+|++..+.. |+
T Consensus 169 ~I~~aL~~~l~~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~ 231 (372)
T 3ly7_A 169 SLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PE 231 (372)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHhCchhhHHHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CC
Confidence 3444444333333443444445667778888776654 333 3588999999999874 55
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.42 E-value=0.014 Score=60.02 Aligned_cols=93 Identities=4% Similarity=-0.071 Sum_probs=66.5
Q ss_pred hcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HH
Q 006012 522 EQERWEDVKRLLGNMRAQ---GLLPN----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LA 593 (664)
Q Consensus 522 ~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~ 593 (664)
..|++++|..++++..+. -+-|+ ..+++.|..+|...|++++|+.+++ ++++++.+..... .|+. .+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~----~aL~i~~~~lG~~-Hp~~a~~ 384 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQ----KIIKPYSKHYPVY-SLNVASM 384 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHHSCSS-CHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHH----HHHHHHHHHcCCC-ChHHHHH
Confidence 346777777777766542 12222 4678888999999999999988765 4555555444221 2343 47
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 594 LNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 594 ~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
++.|...|...|++++|+.++++..+
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 89999999999999999999999875
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.27 E-value=0.034 Score=57.31 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=71.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC
Q 006012 517 INLLGEQERWEDVKRLLGNMRAQ---GLLPN----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP 589 (664)
Q Consensus 517 l~~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p 589 (664)
+..+.+.|++++|..++++..+. -+.|+ ..+++.|..+|...|++++|+.+++ ++++++.+.... -.|
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~----~~L~i~~~~lg~-~Hp 368 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGT----RTMEPYRIFFPG-SHP 368 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHH----HHHHHHHHHSCS-SCH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHH----HHHHhHHHHcCC-CCh
Confidence 34455677888888888888753 12222 4678888999999999999998865 455555544422 223
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 590 SN-LALNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 590 ~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
+. .+++.|...|...|++++|+.+++++.+
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33 4789999999999999999999998874
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.26 E-value=0.24 Score=55.76 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=62.6
Q ss_pred HHHcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006012 275 FAKAGDASKAMR-FLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKD 353 (664)
Q Consensus 275 ~~~~g~~~~A~~-~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 353 (664)
....+++++|.+ ++..+ ++......++..+.+.|..++|+++.+.-. .-.......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence 345678888766 44221 112233667777777888888776653211 11233456788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 354 AEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEME 397 (664)
Q Consensus 354 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 397 (664)
|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 87775443 266778888888888888888887777664
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.95 E-value=0.29 Score=48.42 Aligned_cols=74 Identities=15% Similarity=0.033 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012 542 LPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENG 621 (664)
Q Consensus 542 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 621 (664)
..++.+|..+...+...|++++|+..++ +.... .|+...|..+...+.-.|++++|.+.+++...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~-----------rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr-- 338 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAIN-----------TGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN-- 338 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHH-----------HHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHH-----------HHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 4577888888777777788888887744 33332 37777788888888889999999999998888
Q ss_pred CCCCHHHHH
Q 006012 622 LKPDVVTYT 630 (664)
Q Consensus 622 ~~p~~~~~~ 630 (664)
+.|...+|.
T Consensus 339 L~P~~~t~~ 347 (372)
T 3ly7_A 339 LRPGANTLY 347 (372)
T ss_dssp HSCSHHHHH
T ss_pred cCCCcChHH
Confidence 577776655
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.89 E-value=0.0085 Score=61.74 Aligned_cols=89 Identities=8% Similarity=-0.086 Sum_probs=64.2
Q ss_pred hcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-HHH
Q 006012 557 QSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKE-----NG-LKPD-VVT 628 (664)
Q Consensus 557 ~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~~ 628 (664)
..|++++|+.+++. ++++..+.... -.|+ ..+++.|..+|...|++++|+.+++++++ .| -.|+ ..+
T Consensus 310 ~~g~~~eA~~~~~~----~L~i~~~~lg~-~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 310 HYKSPSELLEICEL----SQEKMSSVFED-SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp TTSCHHHHHHHHHH----HHHHHTTTBCT-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred hccCHHHHHHHHHH----HHHHhhCccCh-hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 45788988887653 22222221111 1122 24789999999999999999999999874 23 1233 367
Q ss_pred HHHHHHHHHhcCCHhHHHHHHH
Q 006012 629 YTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 629 ~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
++.|...|..+|++++|+.+|+
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~ 406 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALK 406 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHH
Confidence 8999999999999999999998
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.76 E-value=0.035 Score=43.38 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=41.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006012 272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTA-TYAAVITALSNSGRTIEAEAVFEELKESG 330 (664)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 330 (664)
...+.+.|++++|++.|+++.+.. +.+.. .|..+..++.+.|++++|.+.|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445667778888888887777643 33456 77777777777788888888887777653
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.55 E-value=0.12 Score=53.29 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=45.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHH
Q 006012 309 ALSNSGRTIEAEAVFEELKESG---LKP----RTKAYNALLKGYVKMGYLKDAEFVVSEMER-----SGV-LPD-EHTYS 374 (664)
Q Consensus 309 ~~~~~g~~~~A~~l~~~m~~~~---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~-~~~-~~~~~ 374 (664)
.+.+.|++++|+.++++..+.. +.| ...+++.|...|...|++++|+.++++..+ .|. .|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3444555555555555554321 111 133455555666666666666665555442 121 111 34455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 006012 375 LLIDAYANAGRWESARIVLKEME 397 (664)
Q Consensus 375 ~li~~~~~~g~~~~A~~l~~~m~ 397 (664)
.|...|...|++++|+.++++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 66666666666666666666553
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.49 E-value=0.074 Score=41.39 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=37.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 482 IDCHFKCGRYDRAEELFEEMQERGYFPCTT-TYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 482 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 539 (664)
...+.+.|++++|++.|++..+.. +.+.. .+..+..++...|++++|.+.+++.++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345566677777777777766654 33455 6666666777777777777777777664
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.29 E-value=1.3 Score=38.50 Aligned_cols=103 Identities=11% Similarity=0.077 Sum_probs=74.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012 273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLK 352 (664)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 352 (664)
....+.|+++.|.++.+.+ .+...|..|.+...+.|+++-|.+.|..... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3455778999998887765 3677899999999999999999999888653 445666677778887
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012 353 DAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEM 396 (664)
Q Consensus 353 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 396 (664)
...++-+.....|- ++.....+.-.|+++++.++|.+.
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 77766666655541 344445566678888888887554
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.04 E-value=1.2 Score=36.53 Aligned_cols=68 Identities=19% Similarity=0.111 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006012 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL 542 (664)
Q Consensus 474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 542 (664)
+....+..++.+...|+-|+-.+++.++.... +|++.....+..+|.+.|+..++.+++.++.+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 34445555666667777777777777654433 566666677777777777777777777777766653
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.39 E-value=0.27 Score=38.01 Aligned_cols=65 Identities=15% Similarity=0.004 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006012 264 DGQLLNDVIVGFAKAGD---ASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES 329 (664)
Q Consensus 264 d~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 329 (664)
|...+..+..++...++ .++|..++++..+.. +.++.+...+...+.+.|++++|+..|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33444444444433322 455555555555432 223444555555555555555555555555543
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.10 E-value=2.7 Score=36.57 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=22.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012 346 VKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEM 396 (664)
Q Consensus 346 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 396 (664)
.+.|+++.|.++.+.+ -+...|..|.+.....|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554443 14445555555555555555555555444
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.07 E-value=0.44 Score=36.75 Aligned_cols=66 Identities=8% Similarity=-0.046 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 473 PDTITWNTLIDCHFKCGR---YDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 473 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 539 (664)
.+...+..+..++...++ .++|..++++.++.+ +-+......+...+.+.|++++|...|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555555543333 466666666666665 455666666666666666666666666666665
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.00 E-value=0.52 Score=37.17 Aligned_cols=67 Identities=13% Similarity=-0.046 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006012 263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVG------LSPKTATYAAVITALSNSGRTIEAEAVFEELKES 329 (664)
Q Consensus 263 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 329 (664)
.+...+-.|...+.+.|++..|...|+.+.+.- -.+....+..+..++.+.|+++.|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345556677777788888888888887765421 1233556666667777777777777777666654
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.87 E-value=0.65 Score=39.38 Aligned_cols=82 Identities=12% Similarity=0.056 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 006012 456 LHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCG---RYDRAEELFEEMQERGYFP--CTTTYNIMINLLGEQERWEDVK 530 (664)
Q Consensus 456 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~ 530 (664)
+..+++-|.+..+.+. ++..+.-.+.-++++.+ ++++++.+|++..+.+ .| ....+..+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555543 56666666666666666 4557777777766654 23 2344445555667777777777
Q ss_pred HHHHHHHHC
Q 006012 531 RLLGNMRAQ 539 (664)
Q Consensus 531 ~~~~~m~~~ 539 (664)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777777763
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.50 E-value=0.62 Score=39.52 Aligned_cols=81 Identities=17% Similarity=0.089 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 006012 282 SKAMRFLGMAQGVGLSPKTATYAAVITALSNSG---RTIEAEAVFEELKESGLKP--RTKAYNALLKGYVKMGYLKDAEF 356 (664)
Q Consensus 282 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~ 356 (664)
..+.+.|.+..+.| .++..+...+..++++.+ +++++..+|++..+.+ .| +...+-.|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34445555555444 356666666666777766 4556777777766653 12 23444455566677777777777
Q ss_pred HHHHHHHC
Q 006012 357 VVSEMERS 364 (664)
Q Consensus 357 ~~~~m~~~ 364 (664)
.++.+.+.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777664
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.99 E-value=3.2 Score=34.03 Aligned_cols=140 Identities=14% Similarity=0.062 Sum_probs=87.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012 276 AKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAE 355 (664)
Q Consensus 276 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 355 (664)
.-.|.+++..++..+... +.+..-||.+|--....-+-+...++++.+-+. -|. ..+|++....
T Consensus 18 ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 345778888888877765 346667777777666666666666666655431 121 1233333333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012 356 FVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSG 435 (664)
Q Consensus 356 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 435 (664)
..+-.+- .+.......++.+...|+.++-.+++..+.. +.+|+......+..+|.+.|+..++.+++.+.-+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3332221 1344555666777777777777777777533 236677777777788888888888888888777777
Q ss_pred CC
Q 006012 436 VE 437 (664)
Q Consensus 436 ~~ 437 (664)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 53
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.81 E-value=1 Score=35.44 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006012 476 ITWNTLIDCHFKCGRYDRAEELFEEMQE 503 (664)
Q Consensus 476 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 503 (664)
..+..|..+|.+.|++++|+.+++++.+
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444444444444444555444444444
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.03 E-value=1.1 Score=42.39 Aligned_cols=92 Identities=12% Similarity=0.058 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCH
Q 006012 281 ASKAMRFLGMAQGVGLSPK---TATYAAVITALSNS-----GRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM-GYL 351 (664)
Q Consensus 281 ~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~-g~~ 351 (664)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45667777777764 455 55788888888884 88888888888888765433467777788888874 888
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHH
Q 006012 352 KDAEFVVSEMERSGVL--PDEHTYS 374 (664)
Q Consensus 352 ~~a~~~~~~m~~~g~~--~~~~~~~ 374 (664)
+++.+.+++....... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888887655 5544433
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.36 E-value=2.5 Score=40.12 Aligned_cols=85 Identities=16% Similarity=0.100 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCH
Q 006012 316 TIEAEAVFEELKESGLKPR---TKAYNALLKGYVK-----MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANA-GRW 386 (664)
Q Consensus 316 ~~~A~~l~~~m~~~~~~p~---~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~ 386 (664)
...|..++++.++. .|+ -..|..|...|.+ .|+.++|.+.|++..+.+..-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34555666665554 333 3466666666666 367777777777776654332356666666666663 667
Q ss_pred HHHHHHHHHHHhcCCC
Q 006012 387 ESARIVLKEMEVSHAK 402 (664)
Q Consensus 387 ~~A~~l~~~m~~~~~~ 402 (664)
+++.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777776665444
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.09 E-value=2.1 Score=35.89 Aligned_cols=103 Identities=9% Similarity=0.041 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHhcCCHHHHHHHHHHHHHC
Q 006012 298 PKTATYAAVITALSNSGRT------IEAEAVFEELKESGLKPRTK----AYNALLK---GYVKMGYLKDAEFVVSEMERS 364 (664)
Q Consensus 298 ~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~~~~p~~~----~~~~li~---~~~~~g~~~~a~~~~~~m~~~ 364 (664)
.|..+|-..+...-+.|+. +..+++|++.... ++|+.. .|--|-- .+...+++++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3566666666666666666 6666777766653 344311 1110100 112336677777777777554
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006012 365 GVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAK 402 (664)
Q Consensus 365 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 402 (664)
+-.- ...|-.....-.+.|++..|.+++......+.+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 2222 555666666666677777777777766665533
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.64 E-value=6.9 Score=42.80 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=45.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 597 LINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 597 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
-..-|...|+++-|+++.++.... .+-+..+|..|..+|.+.|+++.|+-.+.
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 345567789999999999999983 24468999999999999999999997776
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.07 E-value=1.6 Score=35.53 Aligned_cols=82 Identities=17% Similarity=0.088 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012 282 SKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIE---AEAVFEELKESGLK-PRTKAYNALLKGYVKMGYLKDAEFV 357 (664)
Q Consensus 282 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~ 357 (664)
..+.+.|......| .++..+-..+..++++.....+ ++.+++.+.+.+.+ -.....-.|.-++.+.|++++|.+.
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34444444444333 2555555555666666655444 66666665554211 1222333445556666666666666
Q ss_pred HHHHHHC
Q 006012 358 VSEMERS 364 (664)
Q Consensus 358 ~~~m~~~ 364 (664)
++.+.+.
T Consensus 97 ~~~lL~~ 103 (126)
T 1nzn_A 97 VRGLLQT 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666554
No 234
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.91 E-value=34 Score=38.35 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=9.6
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 006012 344 GYVKMGYLKDAEFVVSEMER 363 (664)
Q Consensus 344 ~~~~~g~~~~a~~~~~~m~~ 363 (664)
+|+..|+.....+++..+..
T Consensus 569 AyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHhcc
Confidence 34444554444445555544
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.88 E-value=3.2 Score=34.86 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhCCCCCCHH-HHHHHHH------HHHhcCChHHHHHHHHHHHHcC
Q 006012 264 DGQLLNDVIVGFAKAGDA------SKAMRFLGMAQGVGLSPKTA-TYAAVIT------ALSNSGRTIEAEAVFEELKESG 330 (664)
Q Consensus 264 d~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~g~~~~~~-~~~~li~------~~~~~g~~~~A~~l~~~m~~~~ 330 (664)
|..+|-..+...-+.|+. ++.+++|+++... ++|+.. .|...|. .+...++.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 444454445544455555 5666666666542 344321 1111111 1233488999999999997754
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006012 331 LKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPD 369 (664)
Q Consensus 331 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 369 (664)
-+- ...|......-.+.|++..|.+++...+..+.+|.
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 333 77777777888899999999999999998877644
No 236
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.76 E-value=17 Score=34.86 Aligned_cols=179 Identities=16% Similarity=0.108 Sum_probs=92.1
Q ss_pred ccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCh--HHHHHH
Q 006012 175 RSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDS--SLLQKL 252 (664)
Q Consensus 175 ~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~--~~~~~l 252 (664)
..|++.||.+ .|.++..-|.+.+++++|++++..-.. .+.+.|+... .++..+
T Consensus 25 ~~G~yYEAhQ----------~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 25 KAGDYYEAHQ----------TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHTCHHHHHH----------HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHH
T ss_pred hccChHHHHH----------HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHH
Confidence 4567777776 777777788888888888887554221 1122222211 122334
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHH----hCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006012 253 YKEIECDKIELDGQLLNDVIVGFAKAGDAS-KAMRFLGMAQ----GVGL--SPKTATYAAVITALSNSGRTIEAEAVFEE 325 (664)
Q Consensus 253 ~~~~~~~~~~~d~~~~~~li~~~~~~g~~~-~A~~~~~~~~----~~g~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 325 (664)
.+-..+.+++++......++..+.....-+ .=.++.+.+. +.|- .-+......+...|.+.|++.+|...|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 444555566666666666666554432111 1122222222 2221 23667777888888888888887776641
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 326 LKESGLKPRTKAYNALLKGYVKM---GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEME 397 (664)
Q Consensus 326 m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 397 (664)
|-.-+...+..++.-+.+. |...++- ...-.+ +-.|.-.|+...|..+|+...
T Consensus 160 ----~~~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~Ra-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 160 ----GTHDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSRL-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHHH-HHHHHHTTBHHHHHHHHHHHH
T ss_pred ----CCCccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHHH-HHHHHHhcCHHHHHHHHHHHH
Confidence 1111233444444333333 3332221 111111 223556677777777777654
No 237
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.10 E-value=9.4 Score=44.58 Aligned_cols=164 Identities=11% Similarity=0.094 Sum_probs=102.9
Q ss_pred HHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHH
Q 006012 171 HALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQ 250 (664)
Q Consensus 171 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~ 250 (664)
..+.+.+.++.+..+..-.+.++...-.+..+|...|++++|.+.|.+.-. |+..+......+ .
T Consensus 820 ~~l~~~~~~~~~~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~---------------~ 883 (1139)
T 4fhn_B 820 EKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVL---------------R 883 (1139)
T ss_dssp HHHHHHSCTTHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSH---------------H
T ss_pred HHHHHhhhHHHHHHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhh---------------c
Confidence 334444555555555333455666667777888889999999999977532 222221111000 0
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHH
Q 006012 251 KLYKEIECD--KIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKT----ATYAAVITALSNSGRTIEAEAVFE 324 (664)
Q Consensus 251 ~l~~~~~~~--~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~ 324 (664)
. ...+... ....-...|..++..+-+.|.++.++++-..+.+..-+.+. ..|..+.+.+...|++++|...+-
T Consensus 884 ~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 884 E-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp H-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred c-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 1 1111111 11223456888888999999999999888776653212221 257888999999999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006012 325 ELKESGLKPRTKAYNALLKGYVKMGYLKD 353 (664)
Q Consensus 325 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 353 (664)
.+..... -......|+..+|..|..+.
T Consensus 963 ~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 963 VLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred hCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 8876543 45677788888887776554
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.06 E-value=1.9 Score=35.14 Aligned_cols=23 Identities=9% Similarity=0.309 Sum_probs=10.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006012 411 ILAGYRDRGEWQRTFQVLKEMKS 433 (664)
Q Consensus 411 ll~~~~~~g~~~~a~~~~~~m~~ 433 (664)
+.-++.+.|++++|.+.++.+.+
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.71 E-value=25 Score=35.90 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006012 279 GDASKAMRFLGMAQG-----VGLSPKTATYAAVITALSNSGRTIEAEAVFEELKE 328 (664)
Q Consensus 279 g~~~~A~~~~~~~~~-----~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 328 (664)
|+++.|++.+-.+.+ .+..-.......++..|.+.|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 667777776644432 12233455666777777777777777666655544
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.49 E-value=12 Score=43.59 Aligned_cols=201 Identities=10% Similarity=0.035 Sum_probs=114.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH--------------------C-
Q 006012 411 ILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLS--------------------E- 469 (664)
Q Consensus 411 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------------~- 469 (664)
++..+...+.++.+.++.... +.+....-.+..+|...|++++|...|.+... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 344445555555444433221 22333334445566667777777777654311 0
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006012 470 -GIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT----TTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN 544 (664)
Q Consensus 470 -g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 544 (664)
....-..-|..++..+.+.|.++.+.++-+..++..-.-+. ..|..+++++...|++++|...+-.+..... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence 00112234677888888888888888888777654322222 2577888889999999999888888876543 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHH-HhhhHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 006012 545 VVTYTTLVDIYGQSGRFDDAIEC-LEGLSDQAVNAFRVMRTD--GLKPSNLALNSLINAFGEDQRDAEAFA-VLQYMK 618 (664)
Q Consensus 545 ~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~-~~~~m~ 618 (664)
......|+..+|..|..+.-..+ |-|+.++-.+++....+. .....+.-|..|..-+...|++..|-. +|+++.
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 56677888888888877665443 224444433333322211 011112335555555566777665554 344443
No 241
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=86.40 E-value=0.0016 Score=65.80 Aligned_cols=242 Identities=14% Similarity=0.109 Sum_probs=119.4
Q ss_pred HHHHHHHHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCC
Q 006012 165 LYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKI 244 (664)
Q Consensus 165 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 244 (664)
+|+.|..++.+.+++.+|+.. -....|+..|..+|.+..+.|.+++-+..+.-.++. .-+...=+.++-+|++.++.
T Consensus 56 VWs~LgkAqL~~~~v~eAIds-yIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL 132 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDS-YIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRL 132 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTS-SCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHccCchHHHHHH-HHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcH
Confidence 445555555555555555443 011123334555555555556655555555443332 12223334455555555554
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------------------CCCCHHHHH
Q 006012 245 DSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVG--------------------LSPKTATYA 304 (664)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--------------------~~~~~~~~~ 304 (664)
.+- ++.. ..|+..-...+.+-|...|.++.|.-+|..+.... -..++.||.
T Consensus 133 ~el------Eefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWK 203 (624)
T 3lvg_A 133 AEL------EEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 203 (624)
T ss_dssp STT------TSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHH
T ss_pred HHH------HHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 320 0000 12333333344444444444444444443221100 023566788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006012 305 AVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAG 384 (664)
Q Consensus 305 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 384 (664)
.+-.+|...+.+.-|.-.--.++-..- -...++..|-..|.+++.+.+++.-.... ......|+-|.-.|++-
T Consensus 204 eV~~ACvd~~EfrLAqicGLniIvhad-----eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 204 EVCFACVDGKEFRLAQMCGLHIVVHAD-----ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF- 276 (624)
T ss_dssp HHTHHHHHSCTTTTTTHHHHHHHCCSS-----CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-
T ss_pred HHHHHHhCchHHHHHHHhcchhcccHH-----HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-
Confidence 888888888887777665555543211 12246677788888888888887765321 23567777777777665
Q ss_pred CHHHHHHHHHHHHh-cCCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 006012 385 RWESARIVLKEMEV-SHAKP------NSFIYSRILAGYRDRGEWQRTF 425 (664)
Q Consensus 385 ~~~~A~~l~~~m~~-~~~~~------~~~~~~~ll~~~~~~g~~~~a~ 425 (664)
+.++..+.++..-. .+++- ....|.-++-.|.+-.++|.|.
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 33433333332211 12211 1224555555555555555443
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.23 E-value=25 Score=34.00 Aligned_cols=180 Identities=14% Similarity=0.094 Sum_probs=92.9
Q ss_pred cccCCH---HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCh--HH
Q 006012 174 GRSEKL---YEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDS--SL 248 (664)
Q Consensus 174 ~~~~~~---~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~--~~ 248 (664)
...|++ .||.+ .|.++..-|.+.+++++|++++..-.. .+.+.|+... .+
T Consensus 23 I~~G~y~~~YEAHQ----------~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 23 IAEGQPEEQYEAAQ----------ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHCCHHHHHHHHH----------HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHH
T ss_pred HhCCCCccccHHHH----------HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHH
Confidence 446777 77776 777777888888888888887544221 1222222211 12
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHhcCChHHHHH
Q 006012 249 LQKLYKEIECDKIELDGQLLNDVIVGFAKAGDAS-KAMRFLGMAQ----GVG--LSPKTATYAAVITALSNSGRTIEAEA 321 (664)
Q Consensus 249 ~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~-~A~~~~~~~~----~~g--~~~~~~~~~~li~~~~~~g~~~~A~~ 321 (664)
+..+.+-..+.++++|......|+..+.....-+ +=..+.+.+. +.| -.-|......+...|.+.+++.+|..
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 2333444455566666666666666655443211 1112222222 112 12356667777788888888888877
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 322 VFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEME 397 (664)
Q Consensus 322 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 397 (664)
-|- . |-.+....|..++.-+.+.+...+ .+...-.+ +-.|.-.++...|..+++...
T Consensus 158 H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRa-VL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 158 HLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARA-VLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHH-HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHH-HHHHHHhCCHHHHHHHHHHHH
Confidence 762 1 333333455444443333332111 12222222 223556677777777666554
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.08 E-value=3.3 Score=41.71 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 006012 478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA-----QGLLPNVVTYTT 550 (664)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 550 (664)
...++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|.+.|+.+.+ .|+.|...+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3445666677778888777777776665 55677777788888888888887777776543 377777765443
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.02 E-value=4.3 Score=44.39 Aligned_cols=128 Identities=13% Similarity=0.058 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCChhh-HH-HHHHHHHhcCCCChHHHHHHHHHHHh-------CCCCCCH
Q 006012 196 YNALISACARNDD-LEKALNLMSKMRQDGYHCDFIN-YS-LVIQSLTRTNKIDSSLLQKLYKEIEC-------DKIELDG 265 (664)
Q Consensus 196 ~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~-~~-~ll~~~~~~g~~~~~~~~~l~~~~~~-------~~~~~d~ 265 (664)
-.+|+..+...++ ++.|+++|+++...+ |.... +. .++..+...+. .+-.+.++..+..+ .-...+.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~-~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIET-KELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 3455555555666 688999999998874 43332 22 22322222222 22223333333221 1111121
Q ss_pred ----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006012 266 ----------QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELK 327 (664)
Q Consensus 266 ----------~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 327 (664)
...+.-.+.+...|+++.|+++-++....- +-+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122222445667899999999998887752 3457899999999999999999998887763
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.77 E-value=4.1 Score=40.99 Aligned_cols=125 Identities=17% Similarity=0.102 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHc--C-CCCChh--hHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCC
Q 006012 191 LTPLTYNALISACA---RNDDLEKALNLMSKMRQD--G-YHCDFI--NYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIE 262 (664)
Q Consensus 191 ~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~--g-~~p~~~--~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~ 262 (664)
.|...|..++.... ..|+.+.|.+.+.+.... | +-++.. .|.. ... .-+++..
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~-------------~~r-~~l~~~~----- 170 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVE-------------PFA-TALVEDK----- 170 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHH-------------HHH-HHHHHHH-----
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHH-------------HHH-HHHHHHH-----
Confidence 35556666665433 468999999999888764 3 112221 1111 100 1111111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 006012 263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKE-----SGLKPRTKA 337 (664)
Q Consensus 263 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~p~~~~ 337 (664)
......++..+...|++++|+..++.+.... +-+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|...+
T Consensus 171 --~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 171 --VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 1233456777888899999998888877653 45778889999999999999999998888654 477777544
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=82.36 E-value=13 Score=30.36 Aligned_cols=77 Identities=10% Similarity=-0.061 Sum_probs=54.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 540 GLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 540 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
+-.|+..+--.+..++.+..+.++.. +++.++..+.+.+..-....+-.|.-++.+.|++++|.++.+.+++
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~--------~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDER--------LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHH--------HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44678888888888888887765432 3444455555443111244566778889999999999999999998
Q ss_pred CCCCCCH
Q 006012 620 NGLKPDV 626 (664)
Q Consensus 620 ~g~~p~~ 626 (664)
+.|+-
T Consensus 107 --~eP~N 111 (134)
T 3o48_A 107 --HERNN 111 (134)
T ss_dssp --TCTTC
T ss_pred --hCCCC
Confidence 67763
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.81 E-value=16 Score=28.06 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=67.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMS 217 (664)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (664)
.....++|..+-+|+...+. ...+.-+-+..+...|+|.+|..+ ....-||...|-+|-. .|.|..+++...+.
T Consensus 18 G~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44578999999999998872 344555556788899999999998 5566789999988866 68899999999998
Q ss_pred HHHHcCCCCChhhH
Q 006012 218 KMRQDGYHCDFINY 231 (664)
Q Consensus 218 ~m~~~g~~p~~~~~ 231 (664)
++...| .|....|
T Consensus 93 ~la~sg-~p~~q~F 105 (115)
T 2uwj_G 93 GLGGSS-DPALADF 105 (115)
T ss_dssp HHHTCS-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 888877 4444444
No 248
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.69 E-value=16 Score=28.07 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=67.3
Q ss_pred CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMS 217 (664)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (664)
.....++|..+-+|+...+. ...+.-+-+..+...|+|.+|..+ ....-||...|-+|-. .|.|..+++...+.
T Consensus 19 G~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45578999999999998872 344555556788899999999998 5566889999988866 67888899988888
Q ss_pred HHHHcCCCCChhhH
Q 006012 218 KMRQDGYHCDFINY 231 (664)
Q Consensus 218 ~m~~~g~~p~~~~~ 231 (664)
++...| .|....|
T Consensus 94 ~la~sg-~p~~q~F 106 (116)
T 2p58_C 94 RLARSQ-DPRIQTF 106 (116)
T ss_dssp HHTTCC-CHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 888876 4444444
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.08 E-value=9.8 Score=32.53 Aligned_cols=53 Identities=9% Similarity=0.051 Sum_probs=29.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHhcCChHHHHHHHh
Q 006012 517 INLLGEQERWEDVKRLLGNMRAQ-GLLPN-------VVTYTTLVDIYGQSGRFDDAIECLE 569 (664)
Q Consensus 517 l~~~~~~g~~~~a~~~~~~m~~~-~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~ 569 (664)
++.+...|.++.|+-+.+.+... +..|+ ..++..+.+++...|++..|...|+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~ 87 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYT 87 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 34455556666666555554432 11222 2355566677777777777776654
No 250
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=78.20 E-value=6.1e-05 Score=75.76 Aligned_cols=242 Identities=12% Similarity=0.132 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006012 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG 344 (664)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 344 (664)
..+|..|..++.+.|.+.+|++.|=+ ..|...|..+|.+..+.|.+++-.+.+...++..-.| ..=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHH
Confidence 34566677777777777766665522 1355567778888888888888777776665543333 344568888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------CCCC
Q 006012 345 YVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSH--------------------AKPN 404 (664)
Q Consensus 345 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--------------------~~~~ 404 (664)
|++.+++.+.++++. .||..-...+.+-|...|.++.|.-+|..+.... -..+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 888887665443321 2455455566677777777777766665442111 1234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012 405 SFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDC 484 (664)
Q Consensus 405 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 484 (664)
..||..+-.+|...+++.-|.-.--.+.-. +| -...++..|-..|.+++.+.+++.-.... ......|+.|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 456666666666666655544332222211 11 11234555666677776666666655321 3455666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006012 485 HFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLG 534 (664)
Q Consensus 485 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 534 (664)
|++- ++++..+.++..-.+--.| -++++|.+...|.++.-++.
T Consensus 273 YsKY-~PeKlmEHlklf~sriNip------KviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIP------KVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCT------TTHHHHTTTTCHHHHHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHH------HHHHHHHHHhhHHHHHHHHh
Confidence 6654 3454444444322221111 24555555555555554444
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.08 E-value=14 Score=28.57 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 608 AEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 608 ~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
=++.+-++.+-...+.|++.+..+.++||.|.+++.-|.+++|
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE 69 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILE 69 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444444444445555666666666666666666666666555
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.06 E-value=28 Score=28.82 Aligned_cols=75 Identities=9% Similarity=-0.083 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 541 LLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKEN 620 (664)
Q Consensus 541 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 620 (664)
-.|+..+-..+..++.+..+.++.. +++.++..+.+.+..-.....-.|.-++.+.|++++|.++.+.+++
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~--------~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~- 105 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDER--------LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE- 105 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHH--------HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 3578888888888888888766533 3344455555432211233455677889999999999999999999
Q ss_pred CCCCC
Q 006012 621 GLKPD 625 (664)
Q Consensus 621 g~~p~ 625 (664)
+.|+
T Consensus 106 -~eP~ 109 (144)
T 1y8m_A 106 -HERN 109 (144)
T ss_dssp -TCCC
T ss_pred -cCCC
Confidence 6775
No 253
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=75.37 E-value=1.1e+02 Score=34.30 Aligned_cols=51 Identities=10% Similarity=0.065 Sum_probs=22.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHH
Q 006012 417 DRGEWQRTFQVLKEMKSSGVEPDTHFYN--VMIDTFGKYNCLHHAMAAFDRMLS 468 (664)
Q Consensus 417 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~ 468 (664)
..|+.+.+..+.+.+.... .|....-. ++.-+|+..|+.....+++..+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 4455555555555554421 11111111 222344555565555555555554
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=74.61 E-value=24 Score=28.84 Aligned_cols=67 Identities=6% Similarity=-0.035 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 368 PDEHTYSLLIDAYANAGRW---ESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS 434 (664)
Q Consensus 368 ~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 434 (664)
|+..+--.+..++++..+. .+++.+++++.+.+..-....+-.+.-++.+.|++++|.+..+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3444444444444444432 234445544444331122333444444555555555555555555443
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.58 E-value=1e+02 Score=31.32 Aligned_cols=100 Identities=11% Similarity=0.093 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCC
Q 006012 513 YNIMINLLGEQERWEDVKRLLGNMRAQ--GLLPN---VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGL 587 (664)
Q Consensus 513 ~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~ 587 (664)
...|...+...|++.+|.+++..+... +.... ...+...++.|...+++..|..++...... ......
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~-------~~~~~~ 212 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKK-------TFKNPK 212 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------HHHSSC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------hcccCC
Confidence 345667777888888888888877643 22211 346667778888899998887765432111 112222
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 588 KPSN--LALNSLINAFGEDQRDAEAFAVLQYMKE 619 (664)
Q Consensus 588 ~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 619 (664)
.|+. ..+..++..+...+++.+|.+.|.++.+
T Consensus 213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2332 2467777888889999999988888764
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=68.16 E-value=29 Score=29.59 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=37.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006012 272 IVGFAKAGDASKAMRFLGMAQGVG-LSPK-------TATYAAVITALSNSGRTIEAEAVFEELKE 328 (664)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g-~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 328 (664)
+..+...|.++.|.-+.+.+.... ..|+ ..++..+.+++...|++..|...|++.++
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 445566777777777766544311 1233 23566777888888888888888888643
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=67.58 E-value=37 Score=27.76 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006012 281 ASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKE 328 (664)
Q Consensus 281 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 328 (664)
.-+..+-++.+...++-|+.....+.+++|.+.+++..|.++|+-++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444455555555556666666666666666666666666665554
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=65.17 E-value=45 Score=25.71 Aligned_cols=46 Identities=13% Similarity=0.212 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012 248 LLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQG 293 (664)
Q Consensus 248 ~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 293 (664)
.+++-++.+....+-|++.+..+.+.+|-+.+++..|.++|+.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3455556666666677777777777777777777777777776653
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=63.01 E-value=1.1e+02 Score=29.49 Aligned_cols=169 Identities=12% Similarity=0.060 Sum_probs=101.7
Q ss_pred HHHHHHHHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----HHHHHcCCCCChhhHHHHHHHHHh
Q 006012 165 LYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLM----SKMRQDGYHCDFINYSLVIQSLTR 240 (664)
Q Consensus 165 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~ 240 (664)
.+.++..=|.+.+++++|+.+ ...-...+.+.|+...|.++- +-+.+.++++|......++..+..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidL----------L~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDI----------LASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCHHHHHHH----------HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 455666678889999999874 222333456667776666654 445566788888877777777776
Q ss_pred cCCCChHHHHHHHHHHHh----CC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006012 241 TNKIDSSLLQKLYKEIEC----DK--IELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG 314 (664)
Q Consensus 241 ~g~~~~~~~~~l~~~~~~----~~--~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 314 (664)
....+... ..+.+.+++ .| ..-|......+...|.+.+++.+|..-|= .|-.++...|..++.-+.+.+
T Consensus 107 ~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 107 FQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp SCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTS
T ss_pred CCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhc
Confidence 65443222 233333332 12 34578888899999999999999988762 232333456655554444333
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 315 RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMER 363 (664)
Q Consensus 315 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 363 (664)
...+ ++...-. .+-.|.-.+++..|..+++...+
T Consensus 182 ~~~e--------------~dlfiaR-aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 182 ESHT--------------APLYCAR-AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp CGGG--------------HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcc--------------HHHHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence 2211 1222222 33345566788888887766553
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=60.52 E-value=72 Score=26.42 Aligned_cols=67 Identities=6% Similarity=-0.035 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 368 PDEHTYSLLIDAYANAGRW---ESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS 434 (664)
Q Consensus 368 ~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 434 (664)
++..+--.+..+++++.+. .+++.+++.+...+..-.......+.-++.+.|++++|.+..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3444444444445544432 244455555544332222333344445555555555555555555554
No 261
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=60.27 E-value=43 Score=32.80 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012 478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQER--WEDVKRLLGNMRAQGLLPNVVTYTTLV 552 (664)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li 552 (664)
.+.++.-|...|+.++|...++++....+.+ .....++..++-+.++ .+.+.+++..+...|+-+.......+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 4556677777888888888887775322211 3334444455554332 345667777777666654444333333
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.83 E-value=60 Score=32.81 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006012 267 LLNDVIVGFAKAGDASKAMRFLGMAQGV--GLSPKTATYAAVITALSNSGRTIEAEAVFEELKE 328 (664)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 328 (664)
+...+...|.+.|++++|.+.|.++... +...-...+-.+|+.+...+++..+...+.+...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4566777888888888888888877652 2233355677777777778888877777777643
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=59.44 E-value=51 Score=25.35 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=25.1
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006012 449 TFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG 505 (664)
Q Consensus 449 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (664)
.+...|++++|..+.+.+- .||...|-+|-. .+.|..+++..-+.++..+|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3445555555555443332 455555544432 24555555555555555544
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=59.11 E-value=20 Score=33.33 Aligned_cols=55 Identities=18% Similarity=0.107 Sum_probs=39.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012 484 CHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539 (664)
Q Consensus 484 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 539 (664)
...+.|.+++|++....-++.. +-|...-..++..+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456677777777777777765 566777777777777778888777777777664
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.77 E-value=76 Score=32.04 Aligned_cols=61 Identities=5% Similarity=-0.031 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 302 TYAAVITALSNSGRTIEAEAVFEELKESGLK--PRTKAYNALLKGYVKMGYLKDAEFVVSEME 362 (664)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 362 (664)
++..+...|.+.|++++|.+.|.++...... --...+-.+++.+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4556666777777777777777766653221 123445555555555666666555555543
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=57.75 E-value=1.5e+02 Score=29.36 Aligned_cols=235 Identities=10% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHCCCCC-C
Q 006012 405 SFIYSRILAGYRDRGEWQRTFQVLKEMKS----SGVEPDTHFYNVMIDTFGKYNC-----LHHAMAAFDRMLSEGIEP-D 474 (664)
Q Consensus 405 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~~-~ 474 (664)
......+...|.+.|+.++..+++...+. -.-.-.......+++.+....+ ++-..+.++...+..-.. .
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHH
Q 006012 475 TITWNTLIDCHFKCGRYDRAEELFEEMQER-----GYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ--GLLPNVVT 547 (664)
Q Consensus 475 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~ 547 (664)
...=.-++..|...|++.+|.+++.++.+. +-.--...|..-++.|...+++.++...+...... .+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Q ss_pred HHHH----HHHHH-hcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 548 YTTL----VDIYG-QSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN----LALNSLINAFGEDQRDAEAFAVLQYMK 618 (664)
Q Consensus 548 ~~~l----i~~~~-~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 618 (664)
...+ +..+. ..+++..|...| |+......-.-+. .....++.+.....+.+--.-+-....
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F----------~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~ 248 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYF----------YEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLA 248 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHH----------HHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHH----------HHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccc
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 619 ENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 619 ~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
..-..|+...+..|+.++.. +++.+..++++
T Consensus 249 ~~~~~pei~~l~~L~~a~~~-~dl~~f~~iL~ 279 (394)
T 3txn_A 249 ITYSGRDIDAMKSVAEASHK-RSLADFQAALK 279 (394)
T ss_dssp HTTCSHHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred cccCCccHHHHHHHHHHHHh-CCHHHHHHHHH
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=57.53 E-value=78 Score=25.91 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=44.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006012 249 LQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVI 307 (664)
Q Consensus 249 ~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 307 (664)
.++-++.+....+-|+..+..+.+.+|-+.+|+..|.++|+.++..- .+....|..++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 45667777777888999999999999999999999999999887532 23344566655
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=57.00 E-value=80 Score=27.90 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=35.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006012 453 YNCLHHAMAAFDRMLSEGIEPD-TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP 508 (664)
Q Consensus 453 ~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 508 (664)
++...++..+|..|...|+... ...|......+...|++.+|.++|+.-++++-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3345566777777766554333 4456666666666777777777777777666555
No 269
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=55.74 E-value=1.1e+02 Score=29.90 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 268 LNDVIVGFAKAGDASKAMRFLGMAQ 292 (664)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~ 292 (664)
...+|.-|...|+.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 3567888889999999999998865
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=54.18 E-value=39 Score=31.48 Aligned_cols=54 Identities=20% Similarity=0.132 Sum_probs=30.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006012 345 YVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVS 399 (664)
Q Consensus 345 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 399 (664)
..+.|+++++++....-++..+. |...-..|+..+|-.|+++.|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34455566666555555555432 5555555666666666666666555555443
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=53.72 E-value=49 Score=25.39 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=24.5
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006012 449 TFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG 505 (664)
Q Consensus 449 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 505 (664)
.+...|++++|..+.+.+- .||...|-+|-. .+.|..+++..-+.++..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3444555555554443322 455555544432 24555555555555555544
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=47.00 E-value=2e+02 Score=27.46 Aligned_cols=168 Identities=11% Similarity=0.030 Sum_probs=100.0
Q ss_pred HHHHHHHHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCCChhhHHHHHHHHHh
Q 006012 165 LYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNL----MSKMRQDGYHCDFINYSLVIQSLTR 240 (664)
Q Consensus 165 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~ 240 (664)
.+.++..=|.+.+++++|+.+ ...-...+.+.|+...|-++ .+-..+.+++++......++..+..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidl----------L~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIEL----------ISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHH----------HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 456677778888999998874 22233345667777666664 4445556788888777777777666
Q ss_pred cCCCChHHHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 006012 241 TNKIDSSLLQKLYKEIE----CDK--IELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNS- 313 (664)
Q Consensus 241 ~g~~~~~~~~~l~~~~~----~~~--~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~- 313 (664)
....+... .++.+.++ +.| ..-|...+..+...|.+.|++.+|..-|= .|-..+...+..++.-+.+.
T Consensus 105 ~p~~~~~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 105 LDPSEPNL-KDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp CCTTCTTH-HHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCchH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhc
Confidence 44332211 23333333 222 23478899999999999999999988663 11111344555554444333
Q ss_pred --CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012 314 --GRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEME 362 (664)
Q Consensus 314 --g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 362 (664)
|...++ +...-. .+-.|.-.|++..|..+++...
T Consensus 180 ~~~~~~e~--------------dlf~~R-aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 180 DDIEDSTV--------------AEFFSR-LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TCCCHHHH--------------HHHHHH-HHHHHHHTTBHHHHHHHHHHHH
T ss_pred CCCCcchH--------------HHHHHH-HHHHHHHhcCHHHHHHHHHHHH
Confidence 333332 111112 2333556678888888888765
No 273
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=45.94 E-value=3e+02 Score=29.23 Aligned_cols=272 Identities=10% Similarity=0.025 Sum_probs=150.4
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 006012 148 AVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCD 227 (664)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 227 (664)
++...+.+....|....+-+.-+..+++.+++..-..+....+.+...-.....+....|+..+|......+-..| ...
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~ 135 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQ 135 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCC
Confidence 5555565655445545566667778888888887777644456666666677778888999888988888887776 455
Q ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCC-----------CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006012 228 FINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIE-----------LDG-QLLNDVIVGFAKAGDASKAMRFLGMAQGVG 295 (664)
Q Consensus 228 ~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~-----------~d~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 295 (664)
...+..++..+.+.|.+......+-+..+...+-. ++. .....++..+.+ ...+..... .
T Consensus 136 p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~---~-- 207 (618)
T 1qsa_A 136 PNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFAR---T-- 207 (618)
T ss_dssp CTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHH---H--
T ss_pred cHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHh---c--
Confidence 67788889888888887665433333444333311 110 001111111111 111111110 0
Q ss_pred CCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCC
Q 006012 296 LSPKTAT---YAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLK----GYVKMGYLKDAEFVVSEMERSGVLP 368 (664)
Q Consensus 296 ~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~----~~~~~g~~~~a~~~~~~m~~~g~~~ 368 (664)
..++... +...+.-+.+. +.+.|...+....+... .+......+-. .+...+...++...+....... .
T Consensus 208 ~~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~ 283 (618)
T 1qsa_A 208 TGATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--Q 283 (618)
T ss_dssp SCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--C
T ss_pred cCCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--C
Confidence 1122221 11222333333 67888888877765332 23333222222 2233342445566666554432 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012 369 DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS 433 (664)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 433 (664)
+.....-.+....+.|+++.|...|+.|..... .......-+.+++...|+.++|..+|..+.+
T Consensus 284 ~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 284 STSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 333344444555677888888888888754321 2233344455677778888888888877653
No 274
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.86 E-value=1.5e+02 Score=26.92 Aligned_cols=43 Identities=7% Similarity=-0.118 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEME 397 (664)
Q Consensus 352 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 397 (664)
.-+..+.+++.. ..+.......+..+.+.|+.++|..+|-+..
T Consensus 76 ~L~~~L~~~l~~---~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 76 AISSKLSQSILS---SNEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHHHHHT---CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 344444445532 3345555666677777788888877776654
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=41.68 E-value=1.8e+02 Score=25.62 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006012 278 AGDASKAMRFLGMAQGVGLSPK-TATYAAVITALSNSGRTIEAEAVFEELKESGLKP 333 (664)
Q Consensus 278 ~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 333 (664)
++...++.++|..|...|+-.. ..-|......+-..|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3445667777777766554433 4456666666666777777777777666665555
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.52 E-value=1.6e+02 Score=24.69 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=24.5
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006012 459 AMAAFDRMLSEGIEPD-TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP 508 (664)
Q Consensus 459 A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 508 (664)
+..+|..|..+|+... ...|......+...|++.+|.++|+.-++++-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555554443322 3344444444555555555555555555554444
No 277
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=40.53 E-value=9.6 Score=19.86 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=10.7
Q ss_pred cCCCCCCCCCCCccc
Q 006012 3 LLPPQPLSVRFPAIH 17 (664)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (664)
.-||.|+|+-|-.|.
T Consensus 8 vqppapppnafvei~ 22 (26)
T 2lkw_A 8 VQPPAPPPNAFVEIX 22 (26)
T ss_pred ccCCCcCCCeeEEEE
Confidence 346788888887664
No 278
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=40.17 E-value=1.5e+02 Score=28.24 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012 408 YSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNC--LHHAMAAFDRMLSEGIEPDTITWNTLID 483 (664)
Q Consensus 408 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~li~ 483 (664)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+...+++..+.+.|+-+.......+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~ 245 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYER 245 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 346677777788888888888887532111 23444455555555433 4556677777776665444443333333
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=39.85 E-value=50 Score=29.64 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=18.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 006012 200 ISACARNDDLEKALNLMSKMRQDGYHCD 227 (664)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~m~~~g~~p~ 227 (664)
+...++.|+.+.+..+++.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 4445677888777777776666665444
No 280
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.68 E-value=1.2e+02 Score=34.51 Aligned_cols=111 Identities=10% Similarity=0.038 Sum_probs=66.2
Q ss_pred HHHHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHH
Q 006012 169 LIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSL 248 (664)
Q Consensus 169 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~ 248 (664)
++..+...|.++-|..+..-.+.++..-..+..+|...|++++|.+.|++.- .|+..+.......- .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~------------~ 882 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLR------------E 882 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGH------------H
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchh------------h
Confidence 4455556677777777766666677666678888889999999999998754 23332221110000 0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006012 249 LQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV 294 (664)
Q Consensus 249 ~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 294 (664)
...++.... ........|..++..|-+.+.++-+.++-+.+.+.
T Consensus 883 ~~~ll~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 883 FQEIAEKYH--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhccCccc--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 001111110 01122347788888888888888888887777653
No 281
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.41 E-value=71 Score=25.87 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCC
Q 006012 195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKI 261 (664)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~ 261 (664)
..+.++.-|...|+.++|...++++..-.+. ..+....+..++-+.+......+-+++..+...|+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4577888899999999999999988632111 12233333334444332222334455555554443
No 282
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.91 E-value=1.7e+02 Score=24.35 Aligned_cols=65 Identities=17% Similarity=0.191 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC
Q 006012 268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR--TIEAEAVFEELKESGLKP 333 (664)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~~~~p 333 (664)
.+.++.-|...|+.++|.+.++++.... -........+..++-+.++ .+.+..++..+...++-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4567888888899999999998875211 1123344445555554322 455677777777665543
No 283
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=36.37 E-value=4.3e+02 Score=28.28 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=23.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006012 270 DVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSN 312 (664)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 312 (664)
.+|-.|.++|++++|.++.++.... +..-...+..++..|+.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 3566778999999999988765431 11111345555566653
No 284
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=36.07 E-value=1.3e+02 Score=25.86 Aligned_cols=51 Identities=12% Similarity=0.084 Sum_probs=40.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC----------------CCH-HHHHHHHHHHHhcCCHhHHHHHHH
Q 006012 600 AFGEDQRDAEAFAVLQYMKENGLK----------------PDV-VTYTTLMKALIRVDKFHKVFSSYL 650 (664)
Q Consensus 600 ~~~~~g~~~~A~~~~~~m~~~g~~----------------p~~-~~~~~l~~a~~~~g~~~~A~~~~~ 650 (664)
+|.+..++..|+..++.+++..+. -|. ..++.+...|.+.|+.+||++.|.
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~ 138 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYV 138 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhh
Confidence 466789999999999999964443 133 356677778889999999999988
No 285
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=34.05 E-value=82 Score=26.40 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCC
Q 006012 195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKI 261 (664)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~ 261 (664)
..+.+|.-|...|+.++|...++++..-.+ -..+....+..++-+.+......+-.++..+...++
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 567788999999999999999998863211 112233334444444333223334455555554443
No 286
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=33.29 E-value=63 Score=29.75 Aligned_cols=6 Identities=0% Similarity=-0.174 Sum_probs=2.6
Q ss_pred HHcCCH
Q 006012 204 ARNDDL 209 (664)
Q Consensus 204 ~~~g~~ 209 (664)
++.|+.
T Consensus 47 ~~~g~~ 52 (285)
T 1wdy_A 47 VQMSRE 52 (285)
T ss_dssp HHTTCH
T ss_pred HHcCCH
Confidence 344443
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=32.88 E-value=2.3e+02 Score=24.05 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=20.7
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006012 494 AEELFEEMQERGYFPC-TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP 543 (664)
Q Consensus 494 A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 543 (664)
+.++|..|..+|+.-. ..-|......+...|++.+|.+++..-++.+-+|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3344444444433222 2223333333444444444444444444444444
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=32.87 E-value=1.1e+02 Score=26.04 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=41.8
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006012 575 AVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV 626 (664)
Q Consensus 575 a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 626 (664)
+.++|..|..+|+.-. ...|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 3445888888877655 346788888888999999999999999998888864
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.56 E-value=68 Score=28.87 Aligned_cols=51 Identities=20% Similarity=0.129 Sum_probs=38.8
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006012 575 AVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD 625 (664)
Q Consensus 575 a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 625 (664)
+.++|..|..+|+.-. ...|......+-..|++.+|..+|+.-++.+-.|-
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3455788888876654 34677788888888999999999998888777774
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.29 E-value=3e+02 Score=24.92 Aligned_cols=85 Identities=16% Similarity=0.124 Sum_probs=41.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012 482 IDCHFKCGRYDRAEELFEEMQER--GYFP----CTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIY 555 (664)
Q Consensus 482 i~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 555 (664)
++.+....++++|.+++++..+. +..+ ........++.-.....-.-+..+.+++ .. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHHH
Confidence 44555666666666666655432 1111 1111122233323333333344444444 22 34555566666777
Q ss_pred HhcCChHHHHHHHh
Q 006012 556 GQSGRFDDAIECLE 569 (664)
Q Consensus 556 ~~~g~~~~A~~~~~ 569 (664)
.+.|+-++|.++|=
T Consensus 102 ~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 102 IKLGLPEQALDLFL 115 (235)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHCCChhHHHHHHH
Confidence 77777777777653
No 291
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.22 E-value=2.1e+02 Score=23.05 Aligned_cols=65 Identities=17% Similarity=0.191 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC
Q 006012 268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR--TIEAEAVFEELKESGLKP 333 (664)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~~~~p 333 (664)
.+.++.-|...|+.++|.+.++++.... -........+..++-+.+. .+...+++..+.+.|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3567888888899999999998875211 1123344445555555432 456777777777666543
No 292
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=31.18 E-value=3.1e+02 Score=27.77 Aligned_cols=81 Identities=22% Similarity=0.162 Sum_probs=52.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012 139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALN 214 (664)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 214 (664)
.....+.|.++ +.+.|+ |.-..+|..-.+.|...|++.+|..+ -.+.-+++.|.+.+-..=...|+..--+.
T Consensus 341 ~l~n~~lA~~l---A~R~~L-pGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~ 416 (494)
T 1bpo_A 341 VLQNPDLALRM---AVRNNL-AGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQ 416 (494)
T ss_dssp TTCCHHHHHHH---HHHTTC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHH
T ss_pred ccCCHHHHHHH---HHhcCC-ccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHH
Confidence 33566665554 445665 44456677778888999999999887 23445677776655554444566566666
Q ss_pred HHHHHHHcC
Q 006012 215 LMSKMRQDG 223 (664)
Q Consensus 215 ~~~~m~~~g 223 (664)
.|..+.+.|
T Consensus 417 YF~~Ll~~g 425 (494)
T 1bpo_A 417 YFGILLDQG 425 (494)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHhccC
Confidence 666666665
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.00 E-value=35 Score=30.58 Aligned_cols=12 Identities=8% Similarity=0.086 Sum_probs=5.9
Q ss_pred HHHcCCHHHHHH
Q 006012 203 CARNDDLEKALN 214 (664)
Q Consensus 203 ~~~~g~~~~A~~ 214 (664)
.++.|+.+....
T Consensus 16 A~~~g~~~~~~~ 27 (240)
T 3eu9_A 16 ATQYGIYERCRE 27 (240)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHcCChHHHHH
Confidence 455666544333
No 294
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=28.61 E-value=63 Score=29.75 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCC
Q 006012 197 NALISACARNDDLEKALNLMSKMRQDGYHCDFI---NYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIEL 263 (664)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~ 263 (664)
++.+...++.|+.+....+ .+.|..++.. .-.+.+...+..|+. .+.+.+.+.|..+
T Consensus 6 ~~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~------~~v~~Ll~~g~~~ 65 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSRE------DIVELLLRHGADP 65 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCH------HHHHHHHHTTCCT
T ss_pred chHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCH------HHHHHHHHcCCCC
Confidence 3455566777886544444 4445444322 111234444555553 4445555555443
No 295
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.15 E-value=2.1e+02 Score=23.70 Aligned_cols=59 Identities=10% Similarity=0.129 Sum_probs=30.3
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006012 360 EMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG 419 (664)
Q Consensus 360 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g 419 (664)
.+.+.|+++ +..-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 17 ~l~~~g~r~-T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 17 SIKKNGLKN-SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHCC--C-HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344555542 23334455555555555566666666666555555555555555554444
No 296
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.93 E-value=2.8e+02 Score=23.19 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=5.1
Q ss_pred HHHHHHHHCCC
Q 006012 356 FVVSEMERSGV 366 (664)
Q Consensus 356 ~~~~~m~~~g~ 366 (664)
.+-.++.++|+
T Consensus 84 ~I~~eL~~KGI 94 (159)
T 3c1d_A 84 RIRQELNQKGI 94 (159)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 34444444554
No 297
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.83 E-value=5.4e+02 Score=26.49 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC--HHHHH-HHHHHHHhcCChHHHHHHHHHHHHc
Q 006012 265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGL-SPK--TATYA-AVITALSNSGRTIEAEAVFEELKES 329 (664)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~--~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~ 329 (664)
..++|.++..|...+.++.|..+..+..--.. .++ ...|. .+...+.-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56778888888888888888888887742100 011 12222 3456677778888888888777654
No 298
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.90 E-value=1.8e+02 Score=20.77 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=44.6
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 006012 580 RVMRTDGLKPSNLALNSLINAFGEDQ-RDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFH 643 (664)
Q Consensus 580 ~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~ 643 (664)
..|...|++.+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 346677887776543 4556665554 55667888888888766678888888888888877543
No 299
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=25.50 E-value=3.5e+02 Score=25.48 Aligned_cols=256 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHH---HHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHH----
Q 006012 197 NALISACARNDDLEKALNLMSKMRQDGYHCDFINYS---LVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLN---- 269 (664)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~---- 269 (664)
++.+...++.|+.+-+..+++. |..+|...-. +-|...+..|.. .+.+.+.+.|..++.....
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~----Gadvn~~~~~~g~TpLh~A~~~g~~------~iv~~Ll~~ga~~~~~~~~~~~~ 95 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSRE------DIVELLLRHGADPVLRKKNGATP 95 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTTCCCHHHHHHHTTCH------HHHHHHHHTTCCTTCCCTTCCCH
T ss_pred ChHHHHHHHcCCHHHHHHHHHC----CCCCCccCCCCCcCHHHHHHHcCCH------HHHHHHHHcCCchhhhccCCCch
Q ss_pred -------------------------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH--------HHHHH
Q 006012 270 -------------------------------DVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAA--------VITAL 310 (664)
Q Consensus 270 -------------------------------~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~--------li~~~ 310 (664)
..+...+..|..+-...+++.-....+......... .+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A 175 (337)
T 4g8k_A 96 FILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 175 (337)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHH
T ss_pred hHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHH
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHH
Q 006012 311 SNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYS--LLIDAYANAGRWES 388 (664)
Q Consensus 311 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~ 388 (664)
++.|+.+-+..++++....--..|....+.+......... .....+.+.+.+.|..++..... +.+...+..|..+.
T Consensus 176 ~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~-~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~ 254 (337)
T 4g8k_A 176 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD-SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 254 (337)
T ss_dssp HHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT-TTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHH
T ss_pred HHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc-ccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHH
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 006012 389 ARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLS 468 (664)
Q Consensus 389 A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 468 (664)
+..+++.-...--..|..-++.|..+..... .++.+.+.+.|..++..+ .+...++.|+.+ +.+.+++
T Consensus 255 v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~-----~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~ 322 (337)
T 4g8k_A 255 VQRLLEQEHIEINDTDSDGKTALLLAVELKL-----KKIAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLS 322 (337)
T ss_dssp HHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC-----HHHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHH
T ss_pred HHHHHHhcCCcccCcCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHH
Q ss_pred CCCCCCH
Q 006012 469 EGIEPDT 475 (664)
Q Consensus 469 ~g~~~~~ 475 (664)
.|-.+|.
T Consensus 323 ~GA~~d~ 329 (337)
T 4g8k_A 323 HGAKEDF 329 (337)
T ss_dssp TTCCC--
T ss_pred CcCCCCC
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.04 E-value=5.8e+02 Score=26.25 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCCH--HHHH-HHHHHHHHcCCHHHHHHHHHHHHHC
Q 006012 440 THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI-EPDT--ITWN-TLIDCHFKCGRYDRAEELFEEMQER 504 (664)
Q Consensus 440 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~--~~~~-~li~~~~~~g~~~~A~~~~~~m~~~ 504 (664)
...+|.++..|...+.++.|..+..+..--.. .++. ..|. -+...+.-.+++.+|.+.+.....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45566666666666667777666665531000 0010 1111 1223344456666666666665543
No 301
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=24.87 E-value=3.3e+02 Score=23.40 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHHHcCC
Q 006012 369 DEHTYSLLIDAYANAGR 385 (664)
Q Consensus 369 ~~~~~~~li~~~~~~g~ 385 (664)
+..+-...+.++.+.++
T Consensus 94 ~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33344444444444443
No 302
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.49 E-value=4.5e+02 Score=29.66 Aligned_cols=118 Identities=12% Similarity=0.054 Sum_probs=66.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhh-------------HHHHHHHHHHH
Q 006012 516 MINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGL-------------SDQAVNAFRVM 582 (664)
Q Consensus 516 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------------~~~a~~~~~~m 582 (664)
++..|...|..+-+.++..- .+-++..--.+..+|...|++++|.++|++. ......++...
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 45566666766655443322 1223333344666777788888888777611 01111111111
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 006012 583 RTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV----VTYTTLMKALIRVD 640 (664)
Q Consensus 583 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~a~~~~g 640 (664)
. .-.....-|..++..+-+.+.++-++++.+.+++.--..|. ..|..+.++.+..|
T Consensus 891 e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 891 H--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp T--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred c--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1 00111236788999999999999999999999874222233 35666666666554
No 303
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=24.49 E-value=60 Score=29.02 Aligned_cols=18 Identities=6% Similarity=-0.062 Sum_probs=9.0
Q ss_pred HhccCCHHHHHHHHHHHH
Q 006012 450 FGKYNCLHHAMAAFDRML 467 (664)
Q Consensus 450 ~~~~g~~~~A~~~~~~m~ 467 (664)
....|+...+.++.+.+.
T Consensus 217 A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344455555555555544
No 304
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=24.44 E-value=86 Score=27.96 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=13.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCC
Q 006012 272 IVGFAKAGDASKAMRFLGMAQGVGLS 297 (664)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~g~~ 297 (664)
+...++.|+.+....+++.+.+.|..
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 33445556666666666555444433
No 305
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=23.62 E-value=6.7e+02 Score=26.49 Aligned_cols=116 Identities=10% Similarity=-0.001 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 006012 384 GRWESARIVLKEMEVSHAKPNSFIYS----RILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHA 459 (664)
Q Consensus 384 g~~~~A~~l~~~m~~~~~~~~~~~~~----~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 459 (664)
.+.+.|...+....... ..+..... .+.......+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 36788888888776543 22333322 2222333344244555555554443 23433344444445567888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006012 460 MAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQE 503 (664)
Q Consensus 460 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 503 (664)
...|..|..... ....-.--+..++.+.|+.++|..+|..+..
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888887764321 1233333455567778888888888888865
No 306
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.42 E-value=2.1e+02 Score=25.68 Aligned_cols=51 Identities=14% Similarity=0.288 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006012 458 HAMAAFDRMLSEGIEPD-TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP 508 (664)
Q Consensus 458 ~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 508 (664)
....+|..|...|+... ...|......+...|++.+|.++|+.-++++-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34455555555544322 3344455555555555555555555555554444
No 307
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=23.34 E-value=87 Score=29.22 Aligned_cols=12 Identities=0% Similarity=0.138 Sum_probs=5.7
Q ss_pred HHHcCCHHHHHH
Q 006012 203 CARNDDLEKALN 214 (664)
Q Consensus 203 ~~~~g~~~~A~~ 214 (664)
.++.|+.+-+..
T Consensus 38 A~~~g~~~~v~~ 49 (285)
T 3kea_A 38 AIADNNVRLVCT 49 (285)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHcCCHHHHHH
Confidence 345566544333
No 308
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=23.34 E-value=37 Score=30.43 Aligned_cols=14 Identities=7% Similarity=-0.138 Sum_probs=6.5
Q ss_pred HHHHHHHcCCHHHH
Q 006012 271 VIVGFAKAGDASKA 284 (664)
Q Consensus 271 li~~~~~~g~~~~A 284 (664)
.+...+..|+.+-+
T Consensus 45 ~L~~A~~~~~~~~v 58 (240)
T 3eu9_A 45 LLHWAAINNRIDLV 58 (240)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCHHHH
Confidence 34444555555433
No 309
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.02 E-value=2.1e+02 Score=23.51 Aligned_cols=58 Identities=16% Similarity=0.183 Sum_probs=27.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006012 361 MERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG 419 (664)
Q Consensus 361 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g 419 (664)
+.+.|++.+. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+.+.|
T Consensus 13 l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 4445555332 223344444444444555566666655544445555444444444443
No 310
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=22.88 E-value=3.6e+02 Score=23.14 Aligned_cols=111 Identities=11% Similarity=-0.034 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012 298 PKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLI 377 (664)
Q Consensus 298 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 377 (664)
++...-...+.++.+.+..+ +...+..+.. .++...-...+.++.+.++.+.. ..+..+.+ .++..+-...+
T Consensus 62 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~ 133 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAA 133 (211)
T ss_dssp SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHH
Confidence 34444444555555555432 2233333332 23555555555666666553322 23333332 24555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 006012 378 DAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE 420 (664)
Q Consensus 378 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 420 (664)
.++.+.|..+ +...+..+.. .++..+-...+.++.+.+.
T Consensus 134 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 134 FALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 5555555432 2333333322 2444455555555555544
No 311
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=22.43 E-value=5.4e+02 Score=24.99 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012 195 TYNALISACARNDDLEKALNLMSKMR 220 (664)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~ 220 (664)
.-..+|.-|...|+.++|...++++.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 45677788888888888888888875
No 312
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=22.06 E-value=1.4e+02 Score=20.82 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012 593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVD 640 (664)
Q Consensus 593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g 640 (664)
.++.+++.++...-.++++-.+.++.+.| ..+..+|..-++.+++..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 46677888888888999999999999987 677888888888877743
No 313
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.81 E-value=5.1e+02 Score=24.47 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHH
Q 006012 478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQER--WEDVKRLLGNMRAQGLLPNVVTY 548 (664)
Q Consensus 478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~ 548 (664)
.+.++.-|...|+.++|...++++......+ .....++..++-+.++ .+.+.+++..+.+.|+-+.....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~ 240 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMK 240 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 4678888888999999999999985332221 3444555555555433 45577777777776665444433
No 314
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.92 E-value=1.8e+02 Score=24.88 Aligned_cols=23 Identities=4% Similarity=-0.135 Sum_probs=9.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC
Q 006012 345 YVKMGYLKDAEFVVSEMERSGVL 367 (664)
Q Consensus 345 ~~~~g~~~~a~~~~~~m~~~g~~ 367 (664)
.+..|+.+.-.++.+.+.+.|..
T Consensus 45 A~~~~~~~~~~~iv~~Ll~~Gad 67 (186)
T 3t8k_A 45 VLRNNNDEARYKISMFLINKGAD 67 (186)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCcchHHHHHHHHHHCCCC
Confidence 33444444334444444444443
No 315
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.30 E-value=4.4e+02 Score=23.11 Aligned_cols=35 Identities=11% Similarity=0.257 Sum_probs=20.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006012 277 KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSN 312 (664)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 312 (664)
+-.+.+.|+-.+-+|++.| .|....-..++-+.-.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 3366777777777777766 5554444444444433
Done!