BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006015
(664 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 130/307 (42%), Gaps = 50/307 (16%)
Query: 303 SMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLD-- 360
+ L+ I+L VVT L+ I + K L LS C+G + +GL+ +A R+L++LD
Sbjct: 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR 164
Query: 361 --------------------------ITC-CRKISDVSITHVTSSCTGLTSLRMESCTLV 393
I+C ++S ++ + + C L SL++ V
Sbjct: 165 ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA--V 222
Query: 394 PREAFVLIGQRCRFLEELDLTDNEID-----DEGLK-SISRCSKLSVLKLGICLNITGEG 447
P E + QR LEEL + GL ++S C +L L G +
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS-GF-WDAVPAY 280
Query: 448 LAHVGMCCSKLKELDL-YRCVGITDSGILTIACGCPDLEMINI-AYLKDITDXXXXXXXK 505
L V CS+L L+L Y V D ++ + C CP L+ + + Y++D K
Sbjct: 281 LPAVYSVCSRLTTLNLSYATVQSYD--LVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK 338
Query: 506 CSR-LNTFESRGCPL-----ITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQ 559
R L F S + +T GL ++++GC +L + + +C + + ++ +A
Sbjct: 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRP 397
Query: 560 NLRQINL 566
N+ + L
Sbjct: 398 NMTRFRL 404
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 124/344 (36%), Gaps = 81/344 (23%)
Query: 162 MVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLD------------- 208
+VTD + IA KN K++ L C G G+ IA C+ ++ LD
Sbjct: 116 VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175
Query: 209 LSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNXXXX 268
LS+ P T L S+ ++ L E F +L L RC +LK+L ++
Sbjct: 176 LSHFPDTYTSLVSL----NISCLASEVSFS----ALERLVTRCPNLKSLKLNRAV-PLEK 226
Query: 269 XXXXXXXXXXXXXXXTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCV 328
T + + V + +GL S+ L G R L D
Sbjct: 227 LATLLQRAPQLEELGTGGYTAEVRPDVYSGL-------SVALSGCKELRC-LSGFWDAVP 278
Query: 329 SLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCR--------KISDVSITHVTSSCT 380
+ S C +T LSY + DL KL C + I D + + S+C
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK 338
Query: 381 GLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGIC 440
L LR + P E FV+
Sbjct: 339 DLRELR-----VFPSEPFVMEPN------------------------------------- 356
Query: 441 LNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDL 484
+ +T +GL V M C KL+ + LY C +T++ ++TIA P++
Sbjct: 357 VALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNM 399
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 106/428 (24%), Positives = 172/428 (40%), Gaps = 73/428 (17%)
Query: 202 KEIRSLDLSYLPITNKCLPSILK-LQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMS 260
+EIR L + +T+ CL I K ++ + L+L C G LAA+ C++LK LD+
Sbjct: 108 EEIR---LKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR 164
Query: 261 SCQNXXXXXXXXXXXXXXXXXXXTLA---HGSPVTLSIANGL-KKLSMLQSIKLDGSVVT 316
+L S V+ S L + L+S+KL+ +V
Sbjct: 165 ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224
Query: 317 RAGLKAIGDWCVSLKELSLSKCDGVTDE-------GLSYVATKHRDLRKLDITCCRKISD 369
L + L+EL G T E GLS + ++LR C D
Sbjct: 225 EK-LATLLQRAPQLEELGTG---GYTAEVRPDVYSGLSVALSGCKELR-----CLSGFWD 275
Query: 370 VSITH---VTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSI 426
+ V S C+ LT+L + T+ + L+ Q C L+ L + D I+D GL+ +
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQ-CPKLQRLWVLDY-IEDAGLEVL 333
Query: 427 -SRCSKLSVLK--------LGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTI 477
S C L L+ + + +T +GL V M C KL+ + LY C +T++ ++TI
Sbjct: 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITI 392
Query: 478 ACGCPD------------------LEMINIAY------LKDI---------TDXXXXXXX 504
A P+ LE ++I + KD+ TD
Sbjct: 393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIG 452
Query: 505 KCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQI 564
++ S + LG+ + GC L KL+I+ C D +L A + +R +
Sbjct: 453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRSL 511
Query: 565 NLSYTSVT 572
+S SV+
Sbjct: 512 WMSSCSVS 519
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 426 ISRCSKLSVLKLGICLNITGE-GLAHVGMCCSKLKELDLYRCV---GITDS-------GI 474
I +C L VL+ N+ G+ GL + C +LK L + R G+ D G+
Sbjct: 314 IQKCPNLEVLE---TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370
Query: 475 LTIACGCPDLEMINIAYLKDITDXXXXXXXKCSR--------LNTFESRGCPLITSLGLA 526
+ +A GC +LE + + Y+ DIT+ + L E R L G+
Sbjct: 371 IALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429
Query: 527 AIAVGCKQLIKLDIKWCHN-INDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLA 580
++ +GCK+L + + D+G+ + +S N+R + L Y +D GL+ +
Sbjct: 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS 484
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 85/224 (37%), Gaps = 29/224 (12%)
Query: 367 ISDVSITHVTSSCTGLTSLRMESCT----------LVPREAFVLIGQRCRFLEELDLTDN 416
I D + + C L LR+E LV + + + Q C+ LE + + +
Sbjct: 329 IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388
Query: 417 EIDDEGLKSISRCSK----LSVLKLGICLNITG----EGLAHVGMCCSKLKELDLY-RCV 467
+I +E L+SI K ++ L IT G+ + + C KL+ Y R
Sbjct: 389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448
Query: 468 GITDSGILTIACGCPDLEMINIAYLKDITDXXXXXXXKCSRLNTFESRGCPLITSLGLAA 527
G+TD G+ I P++ + + Y+ + + C L E RGC A
Sbjct: 449 GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC----CFSERA 504
Query: 528 IAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSV 571
IA +L L W + Q+L Q+ Y ++
Sbjct: 505 IAAAVTKLPSLRYLWVQGYR------ASMTGQDLMQMARPYWNI 542
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 131/342 (38%), Gaps = 85/342 (24%)
Query: 286 AHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGL----KAIGDWCVSLKELSLSKCDGV 341
+ +P I+N L++L +S+ +V+ L KA D L+ L L KC G
Sbjct: 98 GYVTPWVTEISNNLRQL---KSVHFRRMIVSDLDLDRLAKARAD---DLETLKLDKCSGF 151
Query: 342 TDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVL- 400
T +GL + +T CRKI +L ME + ++ L
Sbjct: 152 TTDGLLSI-----------VTHCRKIK---------------TLLMEESSFSEKDGKWLH 185
Query: 401 -IGQRCRFLEELDLTDNE---IDDEGLKSISR-CSKLSVLKLGICLNITGEGLAHVGM-- 453
+ Q LE L+ E I + L++I+R C L +K+G E L VG
Sbjct: 186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG-----DFEILELVGFFK 240
Query: 454 CCSKLKEL---DLYRCVGITDSGI----------LTIACGCPDLEMINIAYLKDI----- 495
+ L+E L +G+ + + L ++ P+ I + I
Sbjct: 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDL 300
Query: 496 ------TDXXXXXXXKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHN---- 545
T+ KC L E+R +I GL +A CKQL +L I+ +
Sbjct: 301 LYALLETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGM 358
Query: 546 ------INDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLAS 581
++ G++ LA Q L + + + +T+ L S+ +
Sbjct: 359 EDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 457 KLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDXXXXXXXKCSRLNTFESRG 516
+++ +DL V I S + I C L+ +++ L+ ++D K S L G
Sbjct: 56 RVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSG 113
Query: 517 CPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGM-LPLAHFSQNLRQINLS 567
C + L + C +L +L++ WC + + + + +AH S+ + Q+NLS
Sbjct: 114 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 165
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 408 LEELDLTDNEIDDEGLKSI-SRCSKLSVLKL-GICLNITGEGLAHVGMCCSKLKELDLYR 465
++ +DL+++ I+ L I S+CSKL L L G+ L+ + + + S L L+L
Sbjct: 57 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS---DPIVNTLAKNSNLVRLNLSG 113
Query: 466 CVGITDSGILTIACGCPDLEMINIAYLKDITD 497
C G ++ + T+ C L+ +N+++ D T+
Sbjct: 114 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 145
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 457 KLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDXXXXXXXKCSRLNTFESRG 516
+++ +DL V I S + I C L+ +++ L+ ++D K S L G
Sbjct: 94 RVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSG 151
Query: 517 CPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGM-LPLAHFSQNLRQINLS 567
C + L + C +L +L++ WC + + + + +AH S+ + Q+NLS
Sbjct: 152 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 408 LEELDLTDNEIDDEGLKSI-SRCSKLSVLKL-GICLNITGEGLAHVGMCCSKLKELDLYR 465
++ +DL+++ I+ L I S+CSKL L L G+ L+ + + + S L L+L
Sbjct: 95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS---DPIVNTLAKNSNLVRLNLSG 151
Query: 466 CVGITDSGILTIACGCPDLEMINIAYLKDITD 497
C G ++ + T+ C L+ +N+++ D T+
Sbjct: 152 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 20/184 (10%)
Query: 299 LKKLSMLQSIKLDGSVVTRAGLK----AIGDWCVSLKELSLSKC--DGVTDEGLSYVATK 352
L+ L L+ + L + + AGL+ + D L++L L C + E L+ V
Sbjct: 105 LRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASCEPLASVLRA 164
Query: 353 HRDLRKLDIT---CCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIG--QRCRF 407
R L++L ++ + V + S L +LR+E+C L P L G
Sbjct: 165 TRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLCGIVASQAS 224
Query: 408 LEELDLTDNEIDDEGLKS-----ISRCSKLSVLKLGICLNITGEG---LAHVGMCCSKLK 459
L ELDL N + D G+ +S S+L L L C +IT G L V LK
Sbjct: 225 LRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWEC-DITASGCRDLCRVLQAKETLK 283
Query: 460 ELDL 463
EL L
Sbjct: 284 ELSL 287
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 26/113 (23%)
Query: 174 GCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLIL 233
G NL+ + L+W G+ L + + ++SL + P++ P+I L LE+L L
Sbjct: 181 GLVNLQSLRLEWT-GIRSLPASI--ANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDL 236
Query: 234 EGC---------FG---------IDDCS----LAALKHRCKSLKALDMSSCQN 264
GC FG + DCS L HR L+ LD+ C N
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,496,042
Number of Sequences: 62578
Number of extensions: 549457
Number of successful extensions: 1281
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1230
Number of HSP's gapped (non-prelim): 56
length of query: 664
length of database: 14,973,337
effective HSP length: 105
effective length of query: 559
effective length of database: 8,402,647
effective search space: 4697079673
effective search space used: 4697079673
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)